Query 008041
Match_columns 579
No_of_seqs 550 out of 4112
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 5E-51 1.1E-55 399.2 36.8 503 2-566 306-837 (893)
2 KOG0319 WD40-repeat-containing 100.0 1.8E-47 3.9E-52 374.1 23.7 505 2-572 104-767 (775)
3 KOG0271 Notchless-like WD40 re 100.0 8.7E-47 1.9E-51 342.3 23.7 323 2-378 114-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1E-44 2.2E-49 333.2 21.6 282 2-378 174-458 (459)
5 KOG0306 WD40-repeat-containing 100.0 2.7E-43 5.9E-48 344.9 26.5 437 3-563 373-837 (888)
6 KOG0286 G-protein beta subunit 100.0 2.9E-38 6.2E-43 277.7 29.6 280 4-378 56-343 (343)
7 KOG0271 Notchless-like WD40 re 100.0 1.5E-39 3.2E-44 295.3 22.0 275 86-382 127-441 (480)
8 KOG4547 WD40 repeat-containing 100.0 1.5E-35 3.3E-40 285.4 27.2 473 14-563 2-509 (541)
9 KOG0318 WD40 repeat stress pro 100.0 7.6E-34 1.6E-38 268.4 35.1 358 3-382 59-562 (603)
10 KOG0315 G-protein beta subunit 100.0 1.1E-34 2.4E-39 249.4 26.7 274 17-381 10-289 (311)
11 KOG0272 U4/U6 small nuclear ri 100.0 3.5E-36 7.6E-41 277.1 17.6 237 3-280 217-458 (459)
12 KOG0279 G protein beta subunit 100.0 2.9E-34 6.3E-39 251.0 28.4 287 3-380 15-313 (315)
13 KOG0295 WD40 repeat-containing 100.0 4E-35 8.8E-40 265.2 21.1 280 4-379 109-405 (406)
14 KOG0279 G protein beta subunit 100.0 2.2E-33 4.9E-38 245.5 26.5 242 3-282 63-313 (315)
15 KOG0284 Polyadenylation factor 100.0 3.7E-35 8E-40 269.1 14.8 281 4-379 97-379 (464)
16 KOG0306 WD40-repeat-containing 100.0 1.4E-33 3E-38 277.0 26.5 343 5-397 67-641 (888)
17 KOG0285 Pleiotropic regulator 100.0 9.8E-34 2.1E-38 255.5 23.0 284 5-379 153-438 (460)
18 KOG0263 Transcription initiati 100.0 8E-34 1.7E-38 281.6 22.7 238 9-285 382-652 (707)
19 KOG0265 U5 snRNP-specific prot 100.0 5.3E-33 1.2E-37 245.5 24.7 283 3-379 47-337 (338)
20 KOG0291 WD40-repeat-containing 100.0 3.7E-32 8E-37 267.2 33.0 322 9-381 149-509 (893)
21 KOG0286 G-protein beta subunit 100.0 2.1E-32 4.5E-37 240.9 26.6 232 9-280 101-343 (343)
22 KOG0266 WD40 repeat-containing 100.0 3.3E-32 7.2E-37 278.0 31.4 280 4-379 160-453 (456)
23 KOG0273 Beta-transducin family 100.0 9.9E-32 2.1E-36 251.0 27.4 339 2-379 177-522 (524)
24 KOG0263 Transcription initiati 100.0 1.4E-32 3.1E-37 272.7 23.0 201 2-233 450-652 (707)
25 KOG0315 G-protein beta subunit 100.0 1.5E-31 3.2E-36 230.2 24.8 251 3-296 40-302 (311)
26 KOG0276 Vesicle coat complex C 100.0 6.3E-32 1.4E-36 260.2 24.4 248 3-291 13-266 (794)
27 cd00200 WD40 WD40 domain, foun 100.0 1.3E-30 2.8E-35 252.5 33.9 280 2-378 8-289 (289)
28 PLN00181 protein SPA1-RELATED; 100.0 1.2E-30 2.6E-35 286.7 37.6 304 3-379 483-792 (793)
29 KOG0645 WD40 repeat protein [G 100.0 4.2E-31 9.1E-36 230.3 26.7 247 112-379 56-310 (312)
30 KOG0296 Angio-associated migra 100.0 3.6E-31 7.8E-36 239.9 26.9 324 2-379 63-397 (399)
31 KOG0293 WD40 repeat-containing 100.0 5.6E-32 1.2E-36 248.4 21.4 284 3-380 224-513 (519)
32 KOG0316 Conserved WD40 repeat- 100.0 1.3E-30 2.8E-35 222.6 23.2 246 2-292 16-267 (307)
33 KOG0281 Beta-TrCP (transducin 100.0 2.6E-32 5.6E-37 245.3 12.1 277 3-381 197-478 (499)
34 KOG0275 Conserved WD40 repeat- 100.0 8.8E-32 1.9E-36 239.7 15.2 284 9-378 217-507 (508)
35 KOG0318 WD40 repeat stress pro 100.0 7.5E-29 1.6E-33 234.7 33.6 321 5-379 192-601 (603)
36 KOG0282 mRNA splicing factor [ 100.0 5E-31 1.1E-35 247.3 18.4 284 3-378 214-503 (503)
37 KOG0310 Conserved WD40 repeat- 100.0 1E-29 2.2E-34 239.0 26.1 434 4-577 27-480 (487)
38 KOG0295 WD40 repeat-containing 100.0 1.7E-30 3.7E-35 235.4 19.9 238 3-281 150-405 (406)
39 KOG0273 Beta-transducin family 100.0 1.7E-29 3.8E-34 236.0 24.9 247 4-293 236-493 (524)
40 KOG0278 Serine/threonine kinas 100.0 1.3E-30 2.8E-35 224.4 15.4 279 2-380 13-297 (334)
41 KOG0284 Polyadenylation factor 100.0 1.9E-30 4.1E-35 238.2 14.0 239 2-280 137-378 (464)
42 KOG0292 Vesicle coat complex C 100.0 2.5E-29 5.4E-34 251.0 22.1 258 3-299 9-297 (1202)
43 KOG1446 Histone H3 (Lys4) meth 100.0 2.6E-27 5.7E-32 211.8 30.6 250 3-293 14-273 (311)
44 KOG0283 WD40 repeat-containing 100.0 1E-28 2.2E-33 247.6 23.3 259 2-285 266-579 (712)
45 KOG0319 WD40-repeat-containing 100.0 2.9E-28 6.4E-33 239.7 25.2 270 13-378 332-617 (775)
46 KOG0281 Beta-TrCP (transducin 100.0 6.3E-30 1.4E-34 230.0 12.3 238 2-286 236-481 (499)
47 KOG0643 Translation initiation 100.0 4.4E-28 9.5E-33 211.0 22.9 276 86-379 22-316 (327)
48 KOG0266 WD40 repeat-containing 100.0 9.4E-28 2E-32 245.3 27.8 237 4-281 204-453 (456)
49 KOG0316 Conserved WD40 repeat- 100.0 2.7E-28 5.9E-33 208.4 18.7 245 111-382 11-259 (307)
50 KOG0285 Pleiotropic regulator 100.0 3E-28 6.4E-33 220.2 19.9 225 86-380 163-389 (460)
51 KOG0296 Angio-associated migra 100.0 9.3E-28 2E-32 217.8 22.6 272 4-323 107-392 (399)
52 KOG0640 mRNA cleavage stimulat 100.0 1.3E-28 2.8E-33 218.5 16.5 303 2-379 111-425 (430)
53 KOG1539 WD repeat protein [Gen 100.0 5.1E-26 1.1E-30 226.7 35.3 311 13-379 166-647 (910)
54 KOG0276 Vesicle coat complex C 100.0 8.5E-27 1.8E-31 225.0 28.0 237 2-278 54-295 (794)
55 KOG1407 WD40 repeat protein [F 100.0 7.2E-27 1.6E-31 202.8 24.5 248 2-289 19-268 (313)
56 PTZ00421 coronin; Provisional 100.0 4.1E-26 9E-31 232.1 32.8 255 12-288 27-296 (493)
57 KOG0292 Vesicle coat complex C 100.0 8.2E-28 1.8E-32 240.3 19.8 236 86-382 21-282 (1202)
58 cd00200 WD40 WD40 domain, foun 100.0 4.9E-26 1.1E-30 220.3 30.6 233 9-280 55-289 (289)
59 KOG0282 mRNA splicing factor [ 100.0 4.9E-28 1.1E-32 227.3 14.7 241 67-380 216-462 (503)
60 KOG0265 U5 snRNP-specific prot 100.0 2.9E-26 6.3E-31 203.1 24.1 238 2-280 89-336 (338)
61 KOG0313 Microtubule binding pr 100.0 4.4E-26 9.6E-31 207.9 24.9 271 17-327 115-416 (423)
62 KOG0305 Anaphase promoting com 100.0 3E-26 6.6E-31 224.3 25.2 271 12-380 184-461 (484)
63 KOG0289 mRNA splicing factor [ 100.0 5E-26 1.1E-30 210.8 24.7 275 12-378 226-504 (506)
64 PTZ00420 coronin; Provisional 99.9 3.5E-25 7.5E-30 226.1 33.1 238 14-285 35-296 (568)
65 KOG0274 Cdc4 and related F-box 99.9 6.2E-26 1.3E-30 230.9 26.3 236 9-291 212-450 (537)
66 KOG0645 WD40 repeat protein [G 99.9 2.4E-25 5.1E-30 194.6 25.2 240 2-282 60-311 (312)
67 KOG0277 Peroxisomal targeting 99.9 4.8E-26 1E-30 197.0 20.6 282 9-378 12-307 (311)
68 PLN00181 protein SPA1-RELATED; 99.9 4.2E-25 9E-30 242.9 33.6 241 4-281 533-792 (793)
69 KOG0310 Conserved WD40 repeat- 99.9 4.4E-26 9.5E-31 214.6 21.6 231 9-279 72-306 (487)
70 KOG0288 WD40 repeat protein Ti 99.9 8.9E-27 1.9E-31 214.6 15.6 277 3-377 175-458 (459)
71 KOG0305 Anaphase promoting com 99.9 1.7E-25 3.7E-30 219.1 23.4 240 4-284 218-463 (484)
72 KOG0277 Peroxisomal targeting 99.9 7.5E-26 1.6E-30 195.8 17.9 237 10-281 65-308 (311)
73 KOG0275 Conserved WD40 repeat- 99.9 1.2E-26 2.6E-31 207.1 13.1 238 1-280 261-507 (508)
74 KOG0772 Uncharacterized conser 99.9 1.4E-25 2.9E-30 212.2 20.8 284 3-324 167-482 (641)
75 KOG0973 Histone transcription 99.9 5.2E-25 1.1E-29 226.6 24.7 285 9-381 17-356 (942)
76 PTZ00421 coronin; Provisional 99.9 4.9E-24 1.1E-28 217.0 31.6 204 2-234 74-294 (493)
77 KOG0308 Conserved WD40 repeat- 99.9 2.4E-25 5.2E-30 216.2 20.4 232 15-284 35-287 (735)
78 KOG0294 WD40 repeat-containing 99.9 1.1E-24 2.4E-29 194.3 22.6 241 2-284 42-283 (362)
79 KOG0274 Cdc4 and related F-box 99.9 1E-24 2.2E-29 222.1 25.2 239 2-290 248-490 (537)
80 KOG2096 WD40 repeat protein [G 99.9 3.3E-24 7.2E-29 191.3 23.6 287 2-377 85-399 (420)
81 KOG0973 Histone transcription 99.9 2E-24 4.2E-29 222.4 25.2 244 2-284 68-357 (942)
82 KOG0293 WD40 repeat-containing 99.9 4.9E-25 1.1E-29 203.0 18.5 240 3-282 269-513 (519)
83 KOG0278 Serine/threonine kinas 99.9 8.5E-26 1.8E-30 194.8 12.4 242 3-286 59-301 (334)
84 KOG0268 Sof1-like rRNA process 99.9 1.8E-25 3.9E-30 202.7 14.5 261 87-379 80-344 (433)
85 PTZ00420 coronin; Provisional 99.9 3.4E-23 7.4E-28 211.6 32.4 182 92-283 50-249 (568)
86 KOG1408 WD40 repeat protein [F 99.9 1.2E-24 2.7E-29 212.9 20.8 335 8-380 327-713 (1080)
87 KOG0641 WD40 repeat protein [G 99.9 7.1E-24 1.5E-28 180.3 22.7 243 114-379 86-348 (350)
88 KOG0313 Microtubule binding pr 99.9 3.8E-24 8.2E-29 195.4 22.0 239 2-281 143-417 (423)
89 KOG0643 Translation initiation 99.9 3.2E-24 6.9E-29 187.0 20.4 276 2-325 9-313 (327)
90 KOG0283 WD40 repeat-containing 99.9 1.6E-24 3.5E-29 217.6 19.2 239 114-379 264-575 (712)
91 KOG0641 WD40 repeat protein [G 99.9 6E-23 1.3E-27 174.7 25.5 246 3-282 89-349 (350)
92 KOG0299 U3 snoRNP-associated p 99.9 1.7E-23 3.7E-28 195.8 22.6 256 4-284 143-412 (479)
93 KOG0300 WD40 repeat-containing 99.9 9.3E-24 2E-28 188.2 19.6 278 11-380 154-476 (481)
94 KOG0646 WD40 repeat protein [G 99.9 3.9E-23 8.4E-28 193.8 23.6 280 22-381 12-308 (476)
95 KOG2106 Uncharacterized conser 99.9 2E-22 4.3E-27 190.4 28.3 345 9-379 250-625 (626)
96 KOG0288 WD40 repeat protein Ti 99.9 6.1E-24 1.3E-28 196.0 17.2 233 4-279 220-458 (459)
97 KOG0772 Uncharacterized conser 99.9 2.7E-23 5.9E-28 196.7 21.0 280 86-379 179-486 (641)
98 KOG0647 mRNA export protein (c 99.9 1.4E-22 2.9E-27 180.0 23.8 242 9-286 31-285 (347)
99 KOG1273 WD40 repeat protein [G 99.9 1.1E-22 2.5E-27 181.3 22.4 248 8-290 26-288 (405)
100 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-21 2.3E-26 176.0 27.0 268 86-378 26-301 (311)
101 KOG0264 Nucleosome remodeling 99.9 1.4E-22 3E-27 189.8 22.2 256 3-282 124-404 (422)
102 KOG0269 WD40 repeat-containing 99.9 3.2E-23 7E-28 205.3 18.5 236 12-282 46-296 (839)
103 KOG0289 mRNA splicing factor [ 99.9 2.2E-22 4.8E-27 186.8 22.8 237 9-281 265-505 (506)
104 KOG0301 Phospholipase A2-activ 99.9 1.3E-22 2.9E-27 198.8 22.4 269 3-327 14-286 (745)
105 KOG0294 WD40 repeat-containing 99.9 4.3E-22 9.4E-27 177.8 23.6 223 86-380 53-281 (362)
106 KOG1407 WD40 repeat protein [F 99.9 8.2E-22 1.8E-26 171.6 24.5 234 4-281 65-310 (313)
107 KOG4283 Transcription-coupled 99.9 1.4E-21 3E-26 172.9 25.9 217 2-234 42-280 (397)
108 KOG1332 Vesicle coat complex C 99.9 1.3E-22 2.8E-27 174.9 18.4 235 13-280 19-284 (299)
109 KOG0299 U3 snoRNP-associated p 99.9 2E-22 4.4E-27 188.6 21.0 228 4-271 203-444 (479)
110 KOG1274 WD40 repeat protein [G 99.9 3.7E-22 7.9E-27 201.7 23.9 235 10-283 18-263 (933)
111 KOG1539 WD repeat protein [Gen 99.9 1.7E-21 3.7E-26 194.7 28.3 328 15-380 122-606 (910)
112 KOG0639 Transducin-like enhanc 99.9 8.6E-23 1.9E-27 192.6 16.7 272 9-322 423-697 (705)
113 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.6E-21 2.1E-25 185.4 32.0 269 17-381 1-280 (300)
114 KOG0639 Transducin-like enhanc 99.9 1.1E-22 2.4E-27 191.8 16.5 230 10-281 470-703 (705)
115 KOG1036 Mitotic spindle checkp 99.9 1.9E-21 4.1E-26 173.5 22.7 245 9-293 17-273 (323)
116 KOG0301 Phospholipase A2-activ 99.9 6.2E-22 1.3E-26 194.1 21.3 222 12-282 65-288 (745)
117 KOG1408 WD40 repeat protein [F 99.9 2.2E-22 4.9E-27 197.2 17.4 241 6-283 462-714 (1080)
118 KOG2106 Uncharacterized conser 99.9 6.7E-21 1.4E-25 180.2 26.0 315 4-377 155-518 (626)
119 KOG0640 mRNA cleavage stimulat 99.9 3.7E-22 8.1E-27 177.6 16.5 242 3-280 172-424 (430)
120 KOG0650 WD40 repeat nucleolar 99.9 9.2E-22 2E-26 189.6 19.8 290 2-377 399-732 (733)
121 KOG0267 Microtubule severing p 99.9 2.3E-23 5E-28 204.8 8.7 231 3-274 28-260 (825)
122 KOG0264 Nucleosome remodeling 99.9 8.3E-22 1.8E-26 184.7 18.6 245 86-380 137-404 (422)
123 KOG2055 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 180.3 22.2 288 3-379 213-511 (514)
124 KOG0269 WD40 repeat-containing 99.9 2.2E-22 4.7E-27 199.6 14.4 236 12-283 94-341 (839)
125 KOG0321 WD40 repeat-containing 99.9 2.1E-21 4.6E-26 188.6 20.5 291 5-383 49-394 (720)
126 KOG0268 Sof1-like rRNA process 99.9 2.2E-22 4.7E-27 182.8 12.1 269 10-327 71-343 (433)
127 KOG0267 Microtubule severing p 99.9 5E-23 1.1E-27 202.5 8.4 210 86-308 40-251 (825)
128 KOG0302 Ribosome Assembly prot 99.9 8.7E-21 1.9E-25 173.4 20.6 216 5-233 153-381 (440)
129 KOG0646 WD40 repeat protein [G 99.9 6.8E-21 1.5E-25 178.9 19.6 198 86-291 93-316 (476)
130 KOG2919 Guanine nucleotide-bin 99.9 1.2E-20 2.7E-25 169.1 19.8 265 11-290 55-336 (406)
131 KOG1063 RNA polymerase II elon 99.9 3.2E-20 7E-25 182.1 24.6 341 9-379 271-762 (764)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-19 6.5E-24 174.8 31.6 239 10-290 35-287 (300)
133 KOG2048 WD40 repeat protein [G 99.9 1E-19 2.2E-24 178.4 26.7 240 4-283 70-320 (691)
134 KOG1063 RNA polymerase II elon 99.9 3.2E-20 6.9E-25 182.1 23.1 334 8-381 148-649 (764)
135 KOG0308 Conserved WD40 repeat- 99.9 5.3E-21 1.1E-25 186.2 17.4 237 6-282 76-327 (735)
136 KOG2048 WD40 repeat protein [G 99.9 3.5E-19 7.5E-24 174.7 29.4 241 3-284 25-277 (691)
137 KOG0270 WD40 repeat-containing 99.9 4.2E-20 9E-25 172.5 21.3 252 17-287 192-454 (463)
138 KOG1332 Vesicle coat complex C 99.9 2.3E-20 5E-25 161.0 17.5 235 86-378 23-284 (299)
139 KOG1273 WD40 repeat protein [G 99.9 7.1E-21 1.5E-25 169.9 14.5 256 120-390 26-292 (405)
140 KOG0647 mRNA export protein (c 99.9 9.9E-20 2.1E-24 162.0 21.5 248 67-380 29-281 (347)
141 KOG2445 Nuclear pore complex c 99.9 2.5E-19 5.5E-24 159.8 23.3 242 9-282 17-318 (361)
142 KOG0300 WD40 repeat-containing 99.8 5.2E-20 1.1E-24 164.5 16.5 188 86-285 160-389 (481)
143 KOG4328 WD40 protein [Function 99.8 1.3E-19 2.8E-24 169.8 17.8 205 65-282 186-399 (498)
144 KOG4328 WD40 protein [Function 99.8 5.9E-19 1.3E-23 165.4 19.8 281 2-319 185-484 (498)
145 KOG1274 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 175.6 23.9 263 68-364 16-285 (933)
146 KOG1036 Mitotic spindle checkp 99.8 2.2E-18 4.8E-23 154.1 21.7 225 2-272 53-294 (323)
147 KOG1034 Transcriptional repres 99.8 1.2E-18 2.6E-23 156.8 17.9 296 4-379 39-382 (385)
148 KOG2055 WD40 repeat protein [G 99.8 2.1E-18 4.6E-23 161.9 19.3 245 3-282 257-512 (514)
149 KOG1034 Transcriptional repres 99.8 1.8E-18 3.9E-23 155.6 17.5 237 10-281 94-382 (385)
150 KOG2445 Nuclear pore complex c 99.8 1.3E-17 2.9E-22 148.8 22.1 254 86-379 25-317 (361)
151 KOG4283 Transcription-coupled 99.8 2.6E-18 5.6E-23 152.3 17.2 277 86-379 56-364 (397)
152 KOG0270 WD40 repeat-containing 99.8 3.2E-18 7E-23 160.0 18.1 205 69-283 177-405 (463)
153 KOG1445 Tumor-specific antigen 99.8 2.5E-18 5.5E-23 166.9 16.7 122 2-147 78-200 (1012)
154 KOG0307 Vesicle coat complex C 99.8 4.2E-19 9.2E-24 184.2 12.0 241 10-286 69-331 (1049)
155 KOG1188 WD40 repeat protein [G 99.8 7.2E-18 1.6E-22 152.7 17.8 278 86-380 40-346 (376)
156 KOG0303 Actin-binding protein 99.8 9.3E-18 2E-22 154.6 17.8 208 2-233 80-297 (472)
157 KOG1007 WD repeat protein TSSC 99.8 4.3E-17 9.4E-22 144.3 21.0 259 86-379 76-360 (370)
158 KOG0307 Vesicle coat complex C 99.8 1.5E-18 3.2E-23 180.2 13.2 245 65-326 64-324 (1049)
159 KOG2096 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 148.4 18.2 189 9-228 191-400 (420)
160 KOG4378 Nuclear protein COP1 [ 99.8 7.4E-18 1.6E-22 159.4 16.3 214 10-256 84-302 (673)
161 KOG4378 Nuclear protein COP1 [ 99.8 4.1E-17 8.8E-22 154.4 21.2 287 27-361 12-305 (673)
162 KOG0302 Ribosome Assembly prot 99.8 1.8E-17 3.9E-22 151.8 16.6 205 115-379 149-377 (440)
163 KOG0321 WD40 repeat-containing 99.8 3E-17 6.4E-22 160.0 18.8 194 86-284 64-303 (720)
164 KOG4227 WD40 repeat protein [G 99.8 1.7E-16 3.6E-21 146.0 20.9 311 3-379 56-386 (609)
165 KOG1009 Chromatin assembly com 99.7 1.1E-16 2.3E-21 148.4 19.4 255 113-379 61-371 (434)
166 COG2319 FOG: WD40 repeat [Gene 99.7 9E-15 2E-19 150.0 35.9 323 3-380 65-400 (466)
167 KOG2110 Uncharacterized conser 99.7 1.9E-15 4E-20 138.7 26.4 234 9-285 9-251 (391)
168 KOG1963 WD40 repeat protein [G 99.7 1.2E-15 2.5E-20 154.8 27.7 266 12-287 23-380 (792)
169 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-17 6.8E-22 158.0 14.5 241 5-286 296-565 (577)
170 KOG0303 Actin-binding protein 99.7 4.1E-16 8.9E-21 143.8 20.6 207 60-285 77-297 (472)
171 COG2319 FOG: WD40 repeat [Gene 99.7 1.7E-14 3.7E-19 148.0 35.2 322 5-381 111-443 (466)
172 KOG1538 Uncharacterized conser 99.7 1.2E-16 2.6E-21 156.3 17.5 259 97-380 34-293 (1081)
173 KOG0649 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 131.1 22.5 227 9-282 14-274 (325)
174 KOG1587 Cytoplasmic dynein int 99.7 7.6E-16 1.6E-20 156.1 22.6 250 3-283 242-517 (555)
175 PRK11028 6-phosphogluconolacto 99.7 9.1E-15 2E-19 144.8 29.3 188 86-283 46-259 (330)
176 KOG1188 WD40 repeat protein [G 99.7 3.1E-16 6.8E-21 142.2 16.6 190 18-233 41-245 (376)
177 KOG0290 Conserved WD40 repeat- 99.7 7E-16 1.5E-20 136.9 18.3 207 5-233 98-321 (364)
178 KOG0650 WD40 repeat nucleolar 99.7 5.7E-16 1.2E-20 150.1 18.0 225 86-379 412-679 (733)
179 KOG1524 WD40 repeat-containing 99.7 6.1E-16 1.3E-20 147.9 17.7 176 85-277 74-250 (737)
180 KOG1007 WD repeat protein TSSC 99.7 2.9E-15 6.2E-20 132.8 18.1 200 9-230 127-361 (370)
181 PRK11028 6-phosphogluconolacto 99.7 4.3E-14 9.4E-19 140.0 28.4 238 10-282 39-304 (330)
182 KOG1240 Protein kinase contain 99.7 1E-14 2.2E-19 152.4 24.5 255 3-287 1048-1339(1431)
183 KOG0649 WD40 repeat protein [G 99.7 2.2E-14 4.8E-19 124.2 22.4 242 2-280 61-314 (325)
184 KOG2919 Guanine nucleotide-bin 99.7 2.5E-15 5.3E-20 135.3 16.7 226 14-272 120-360 (406)
185 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.4E-20 142.8 14.8 195 9-232 148-356 (398)
186 KOG0644 Uncharacterized conser 99.7 4.1E-16 8.9E-21 156.4 12.6 240 4-287 191-473 (1113)
187 KOG1445 Tumor-specific antigen 99.7 1.2E-15 2.5E-20 148.6 15.0 238 13-282 587-844 (1012)
188 KOG0642 Cell-cycle nuclear pro 99.7 4.5E-16 9.8E-21 150.1 11.6 246 114-381 291-562 (577)
189 KOG0322 G-protein beta subunit 99.7 3.4E-15 7.5E-20 130.8 15.9 229 86-379 25-322 (323)
190 KOG2110 Uncharacterized conser 99.7 2.9E-13 6.3E-18 124.5 28.3 144 87-232 98-250 (391)
191 KOG1517 Guanine nucleotide bin 99.6 6.9E-14 1.5E-18 144.1 24.8 287 12-380 1071-1381(1387)
192 KOG4497 Uncharacterized conser 99.6 2.6E-15 5.7E-20 135.4 12.8 224 10-288 13-246 (447)
193 KOG1272 WD40-repeat-containing 99.6 1.2E-15 2.7E-20 143.6 10.2 225 10-280 134-360 (545)
194 KOG2111 Uncharacterized conser 99.6 7.4E-13 1.6E-17 119.5 25.9 233 8-284 8-258 (346)
195 KOG1334 WD40 repeat protein [G 99.6 1.5E-14 3.2E-19 137.3 15.7 282 3-321 142-458 (559)
196 KOG0322 G-protein beta subunit 99.6 7.2E-15 1.6E-19 128.8 12.5 153 118-281 151-322 (323)
197 KOG1009 Chromatin assembly com 99.6 1.2E-13 2.5E-18 128.5 20.9 243 3-286 65-376 (434)
198 KOG1524 WD40 repeat-containing 99.6 9.6E-15 2.1E-19 139.9 13.9 178 3-226 104-282 (737)
199 KOG2394 WD40 protein DMR-N9 [G 99.6 9.6E-14 2.1E-18 133.3 19.9 248 12-285 130-455 (636)
200 KOG0771 Prolactin regulatory e 99.6 1.8E-14 3.9E-19 134.8 14.1 199 121-379 148-353 (398)
201 KOG1517 Guanine nucleotide bin 99.6 1.2E-13 2.5E-18 142.5 20.6 242 16-284 1122-1383(1387)
202 KOG1587 Cytoplasmic dynein int 99.6 3.4E-13 7.3E-18 137.0 23.4 244 65-380 242-516 (555)
203 KOG2394 WD40 protein DMR-N9 [G 99.6 2.9E-14 6.4E-19 136.8 14.8 137 65-209 219-384 (636)
204 PRK01742 tolB translocation pr 99.6 2.6E-13 5.6E-18 138.7 21.4 206 26-281 183-400 (429)
205 PRK01742 tolB translocation pr 99.6 2.5E-13 5.3E-18 138.9 20.7 189 4-230 204-401 (429)
206 KOG2321 WD40 repeat protein [G 99.6 7.3E-13 1.6E-17 128.3 22.3 257 11-284 57-345 (703)
207 KOG1538 Uncharacterized conser 99.6 1.4E-13 2.9E-18 135.2 16.8 230 4-282 54-293 (1081)
208 KOG3881 Uncharacterized conser 99.6 5.7E-13 1.2E-17 123.4 19.9 149 86-235 161-325 (412)
209 KOG0644 Uncharacterized conser 99.5 4.9E-15 1.1E-19 148.8 6.6 238 114-381 187-427 (1113)
210 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.4E-17 117.8 19.8 132 96-232 37-181 (194)
211 KOG1523 Actin-related protein 99.5 4.3E-13 9.4E-18 121.0 16.8 206 65-285 10-239 (361)
212 KOG2139 WD40 repeat protein [G 99.5 3.8E-12 8.2E-17 116.8 22.0 195 5-231 100-310 (445)
213 PF02239 Cytochrom_D1: Cytochr 99.5 5.3E-12 1.1E-16 124.9 24.4 317 18-379 6-346 (369)
214 KOG2111 Uncharacterized conser 99.5 5.2E-11 1.1E-15 107.8 27.1 143 90-233 107-259 (346)
215 PRK03629 tolB translocation pr 99.5 1.1E-11 2.3E-16 126.6 25.9 235 97-359 180-427 (429)
216 KOG0290 Conserved WD40 repeat- 99.5 4.6E-12 9.9E-17 112.9 19.9 206 65-284 96-320 (364)
217 PF04003 Utp12: Dip2/Utp12 Fam 99.5 1.7E-14 3.7E-19 117.0 4.2 80 484-563 8-89 (110)
218 KOG1963 WD40 repeat protein [G 99.5 1.3E-11 2.8E-16 125.9 25.3 242 9-286 209-542 (792)
219 PRK05137 tolB translocation pr 99.5 1.6E-11 3.4E-16 126.1 26.0 171 97-282 183-366 (435)
220 PRK05137 tolB translocation pr 99.5 3.1E-11 6.7E-16 123.9 27.4 215 27-285 182-415 (435)
221 KOG1523 Actin-related protein 99.5 3.2E-12 6.9E-17 115.5 17.2 200 4-233 11-239 (361)
222 PF08662 eIF2A: Eukaryotic tra 99.5 8.6E-12 1.9E-16 112.0 20.1 153 121-289 9-185 (194)
223 PF02239 Cytochrom_D1: Cytochr 99.5 2.2E-10 4.7E-15 113.5 31.7 192 86-288 5-208 (369)
224 PF10282 Lactonase: Lactonase, 99.5 5.3E-10 1.1E-14 110.9 34.6 243 11-286 42-328 (345)
225 PRK03629 tolB translocation pr 99.5 1.9E-11 4E-16 124.8 24.7 191 9-233 202-409 (429)
226 KOG1354 Serine/threonine prote 99.5 8.3E-12 1.8E-16 113.8 19.1 251 9-285 29-362 (433)
227 PRK04922 tolB translocation pr 99.5 1.8E-11 3.8E-16 125.5 24.0 176 97-287 185-373 (433)
228 PRK04922 tolB translocation pr 99.5 4.8E-11 1E-15 122.4 27.2 213 27-283 184-412 (433)
229 PRK02889 tolB translocation pr 99.4 3.3E-11 7.2E-16 123.1 25.1 176 97-287 177-365 (427)
230 KOG2139 WD40 repeat protein [G 99.4 1.6E-11 3.4E-16 112.8 19.8 192 65-280 98-307 (445)
231 KOG3881 Uncharacterized conser 99.4 1.8E-11 3.9E-16 113.7 19.9 190 86-288 115-326 (412)
232 KOG1310 WD40 repeat protein [G 99.4 1.5E-12 3.3E-17 125.3 13.1 206 67-287 52-308 (758)
233 KOG4227 WD40 repeat protein [G 99.4 9.2E-12 2E-16 115.2 17.3 163 114-284 53-227 (609)
234 PRK02889 tolB translocation pr 99.4 8E-11 1.7E-15 120.3 24.6 180 86-281 207-402 (427)
235 KOG1310 WD40 repeat protein [G 99.4 4.4E-12 9.5E-17 122.3 13.4 207 2-235 49-308 (758)
236 KOG1334 WD40 repeat protein [G 99.4 4.7E-12 1E-16 120.5 11.1 275 86-379 154-465 (559)
237 PF10282 Lactonase: Lactonase, 99.3 2.4E-09 5.2E-14 106.2 30.4 277 89-380 2-322 (345)
238 KOG1240 Protein kinase contain 99.3 1.4E-10 3.1E-15 122.1 21.8 192 86-285 1061-1276(1431)
239 KOG1272 WD40-repeat-containing 99.3 4.2E-12 9.1E-17 120.1 9.2 187 5-228 172-360 (545)
240 KOG4497 Uncharacterized conser 99.3 1.2E-11 2.7E-16 112.0 11.0 219 122-378 13-238 (447)
241 COG2706 3-carboxymuconate cycl 99.3 5.5E-09 1.2E-13 97.0 28.2 242 11-286 45-327 (346)
242 TIGR02800 propeller_TolB tol-p 99.3 1.7E-09 3.6E-14 111.1 27.8 178 86-280 201-395 (417)
243 PRK01029 tolB translocation pr 99.3 1.9E-09 4.2E-14 109.6 27.2 184 90-286 203-407 (428)
244 TIGR02800 propeller_TolB tol-p 99.3 9.5E-10 2E-14 113.0 24.2 174 97-285 171-357 (417)
245 PRK04792 tolB translocation pr 99.3 1.6E-09 3.4E-14 111.2 24.5 175 97-286 199-386 (448)
246 PRK00178 tolB translocation pr 99.3 1.9E-09 4.1E-14 110.9 25.1 175 97-286 180-367 (430)
247 COG2706 3-carboxymuconate cycl 99.3 1.4E-08 3E-13 94.4 27.6 276 89-381 5-322 (346)
248 KOG0974 WD-repeat protein WDR6 99.3 1.8E-10 3.9E-15 119.7 16.9 191 14-232 96-290 (967)
249 PRK00178 tolB translocation pr 99.2 5.4E-09 1.2E-13 107.5 27.5 181 86-282 210-406 (430)
250 KOG0280 Uncharacterized conser 99.2 2.5E-10 5.3E-15 102.3 14.8 198 8-232 124-335 (339)
251 KOG0309 Conserved WD40 repeat- 99.2 3.5E-11 7.6E-16 120.0 10.1 203 4-234 25-236 (1081)
252 KOG2315 Predicted translation 99.2 2E-09 4.4E-14 104.8 21.7 127 140-282 252-390 (566)
253 KOG2321 WD40 repeat protein [G 99.2 2.8E-10 6E-15 110.8 15.7 192 12-232 140-345 (703)
254 PRK04792 tolB translocation pr 99.2 6.7E-09 1.5E-13 106.5 26.4 181 86-282 229-425 (448)
255 COG5354 Uncharacterized protei 99.2 1.3E-08 2.7E-13 98.2 25.7 327 10-380 37-395 (561)
256 PRK01029 tolB translocation pr 99.2 6.8E-09 1.5E-13 105.6 24.2 197 9-234 188-407 (428)
257 KOG2315 Predicted translation 99.2 4.8E-09 1E-13 102.3 20.8 197 4-232 166-392 (566)
258 TIGR03300 assembly_YfgL outer 99.2 2.7E-08 5.7E-13 100.6 27.6 224 16-290 64-305 (377)
259 COG5354 Uncharacterized protei 99.2 1.6E-08 3.4E-13 97.6 23.9 306 5-372 73-421 (561)
260 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.4E-07 5.3E-12 89.7 31.5 224 27-290 27-338 (352)
261 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.1E-08 1.5E-12 93.4 27.7 265 96-380 27-330 (352)
262 PLN02919 haloacid dehalogenase 99.1 8E-08 1.7E-12 107.8 31.8 250 11-286 573-892 (1057)
263 KOG1064 RAVE (regulator of V-A 99.1 3.1E-10 6.8E-15 123.6 12.0 182 9-234 2212-2402(2439)
264 KOG0974 WD-repeat protein WDR6 99.1 1.7E-09 3.7E-14 112.6 16.8 184 86-284 99-290 (967)
265 KOG4547 WD40 repeat-containing 99.1 1.4E-08 3E-13 99.9 21.2 188 86-282 5-220 (541)
266 KOG1409 Uncharacterized conser 99.1 1.6E-08 3.5E-13 92.8 20.1 232 15-285 34-273 (404)
267 PF04762 IKI3: IKI3 family; I 99.1 1.5E-07 3.3E-12 103.6 30.1 235 9-281 79-378 (928)
268 COG5170 CDC55 Serine/threonine 99.1 5.1E-09 1.1E-13 94.6 15.2 247 9-280 30-365 (460)
269 TIGR03300 assembly_YfgL outer 99.1 3.6E-08 7.9E-13 99.6 23.5 226 16-291 104-347 (377)
270 COG4946 Uncharacterized protei 99.0 1.3E-07 2.9E-12 90.4 24.4 173 13-218 327-507 (668)
271 KOG0280 Uncharacterized conser 99.0 9.3E-08 2E-12 86.1 20.8 185 94-288 44-248 (339)
272 PF13360 PQQ_2: PQQ-like domai 99.0 5.3E-07 1.2E-11 84.8 27.7 216 26-287 2-235 (238)
273 KOG2314 Translation initiation 99.0 7.3E-08 1.6E-12 93.9 21.2 320 10-380 215-573 (698)
274 KOG1064 RAVE (regulator of V-A 99.0 3.1E-09 6.8E-14 116.1 12.8 180 86-291 2220-2407(2439)
275 KOG2041 WD40 repeat protein [G 99.0 7.2E-08 1.6E-12 96.5 20.6 239 9-273 18-279 (1189)
276 KOG4532 WD40-like repeat conta 98.9 2.4E-07 5.3E-12 82.3 20.3 197 86-288 84-288 (344)
277 KOG1409 Uncharacterized conser 98.9 5.2E-08 1.1E-12 89.5 15.6 182 3-187 68-270 (404)
278 KOG4190 Uncharacterized conser 98.9 2.8E-09 6.1E-14 103.2 7.4 174 114-292 732-916 (1034)
279 PRK04043 tolB translocation pr 98.9 5.5E-07 1.2E-11 91.1 23.4 189 9-232 191-402 (419)
280 KOG3914 WD repeat protein WDR4 98.9 1.8E-08 3.9E-13 94.6 11.5 159 11-196 68-232 (390)
281 KOG4190 Uncharacterized conser 98.9 8.5E-09 1.8E-13 100.0 9.4 230 5-280 737-986 (1034)
282 PF08450 SGL: SMP-30/Gluconola 98.9 6.8E-06 1.5E-10 77.6 29.3 217 11-271 5-244 (246)
283 PF08450 SGL: SMP-30/Gluconola 98.9 3.4E-06 7.4E-11 79.6 27.0 191 86-290 12-220 (246)
284 PRK04043 tolB translocation pr 98.9 3E-06 6.5E-11 85.8 28.0 177 89-284 203-402 (419)
285 KOG2314 Translation initiation 98.9 1E-06 2.2E-11 86.2 23.1 239 11-283 255-526 (698)
286 KOG1354 Serine/threonine prote 98.8 9.7E-08 2.1E-12 87.8 14.8 247 86-380 37-359 (433)
287 PLN02919 haloacid dehalogenase 98.8 1.4E-06 3E-11 98.0 27.1 213 10-234 628-892 (1057)
288 PRK11138 outer membrane biogen 98.8 7.5E-07 1.6E-11 90.4 22.4 226 17-290 120-361 (394)
289 COG4946 Uncharacterized protei 98.8 4.9E-06 1.1E-10 80.0 25.7 169 86-271 332-507 (668)
290 KOG1912 WD40 repeat protein [G 98.8 4.2E-07 9.2E-12 92.1 19.6 246 11-283 21-305 (1062)
291 PRK11138 outer membrane biogen 98.8 2.3E-06 5E-11 86.9 24.6 236 16-289 68-319 (394)
292 PF15492 Nbas_N: Neuroblastoma 98.8 3.4E-06 7.3E-11 76.5 21.9 197 12-235 50-264 (282)
293 PF13360 PQQ_2: PQQ-like domai 98.8 5.1E-06 1.1E-10 78.1 24.5 188 13-234 32-234 (238)
294 KOG3914 WD repeat protein WDR4 98.8 1.4E-07 2.9E-12 88.8 13.2 160 119-291 64-232 (390)
295 KOG4532 WD40-like repeat conta 98.8 3E-06 6.4E-11 75.6 20.7 187 18-234 85-286 (344)
296 KOG1832 HIV-1 Vpr-binding prot 98.7 8.4E-09 1.8E-13 105.4 5.1 192 66-293 1102-1302(1516)
297 PF07433 DUF1513: Protein of u 98.7 2.5E-05 5.3E-10 73.2 27.3 201 7-235 6-252 (305)
298 KOG4714 Nucleoporin [Nuclear s 98.7 1.6E-07 3.5E-12 83.1 11.6 188 86-280 101-316 (319)
299 PF04762 IKI3: IKI3 family; I 98.7 6.9E-06 1.5E-10 90.7 26.3 187 86-284 87-335 (928)
300 KOG4649 PQQ (pyrrolo-quinoline 98.7 6.8E-05 1.5E-09 67.0 26.8 142 17-188 23-166 (354)
301 KOG2114 Vacuolar assembly/sort 98.6 1.4E-05 3.1E-10 82.5 23.8 193 12-233 30-246 (933)
302 KOG2695 WD40 repeat protein [G 98.6 1.6E-07 3.4E-12 86.5 8.4 141 90-235 228-381 (425)
303 PF07433 DUF1513: Protein of u 98.6 2.2E-05 4.7E-10 73.6 22.1 194 86-291 17-256 (305)
304 KOG1275 PAB-dependent poly(A) 98.6 1.7E-06 3.6E-11 89.6 15.1 183 85-280 146-340 (1118)
305 PF00400 WD40: WD domain, G-be 98.5 4.7E-07 1E-11 57.7 6.8 39 189-228 1-39 (39)
306 PF15492 Nbas_N: Neuroblastoma 98.5 0.00017 3.8E-09 65.7 25.0 195 89-289 11-266 (282)
307 KOG4714 Nucleoporin [Nuclear s 98.5 1.4E-06 3E-11 77.4 11.0 148 128-283 100-255 (319)
308 KOG2041 WD40 repeat protein [G 98.5 2.8E-06 6E-11 85.6 13.3 156 116-283 13-187 (1189)
309 KOG1912 WD40 repeat protein [G 98.4 1.1E-05 2.5E-10 82.1 17.7 188 19-231 81-305 (1062)
310 PF00400 WD40: WD domain, G-be 98.4 6.9E-07 1.5E-11 56.9 6.0 37 108-145 3-39 (39)
311 KOG1645 RING-finger-containing 98.4 1.5E-05 3.2E-10 75.3 16.7 239 2-282 192-461 (463)
312 KOG2695 WD40 repeat protein [G 98.4 1.5E-06 3.2E-11 80.2 10.0 155 11-197 217-386 (425)
313 PF04053 Coatomer_WDAD: Coatom 98.4 9.4E-05 2E-09 74.8 23.8 217 9-284 36-264 (443)
314 KOG0309 Conserved WD40 repeat- 98.4 1.2E-06 2.7E-11 88.4 9.2 199 3-231 114-340 (1081)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 2.6E-07 5.6E-12 94.9 4.4 184 9-234 1105-1295(1516)
316 KOG2066 Vacuolar assembly/sort 98.4 2.5E-05 5.5E-10 80.2 17.8 175 86-282 49-233 (846)
317 cd00216 PQQ_DH Dehydrogenases 98.3 0.00016 3.4E-09 75.4 23.8 234 18-291 111-433 (488)
318 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00068 1.5E-08 67.6 26.8 304 14-369 1-347 (353)
319 KOG2066 Vacuolar assembly/sort 98.3 0.00011 2.4E-09 75.6 20.2 173 16-232 48-235 (846)
320 KOG1275 PAB-dependent poly(A) 98.3 1.8E-05 3.9E-10 82.2 14.4 179 16-228 146-340 (1118)
321 KOG0882 Cyclophilin-related pe 98.2 5.7E-06 1.2E-10 79.1 9.5 201 86-293 20-242 (558)
322 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00058 1.3E-08 61.2 20.5 186 86-288 23-212 (354)
323 KOG1920 IkappaB kinase complex 98.1 0.00052 1.1E-08 74.1 22.1 193 9-233 72-325 (1265)
324 PRK02888 nitrous-oxide reducta 98.1 0.00062 1.3E-08 70.1 21.8 101 126-231 285-405 (635)
325 COG5170 CDC55 Serine/threonine 98.1 3.8E-05 8.3E-10 70.1 11.4 192 86-284 38-311 (460)
326 PRK02888 nitrous-oxide reducta 98.1 0.0024 5.2E-08 65.9 25.3 177 94-283 213-405 (635)
327 KOG3617 WD40 and TPR repeat-co 98.1 0.00014 3.1E-09 75.1 16.0 290 12-379 22-332 (1416)
328 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0031 6.7E-08 66.1 26.6 151 18-192 121-338 (527)
329 KOG0882 Cyclophilin-related pe 98.1 6.3E-05 1.4E-09 72.2 12.6 199 9-233 57-308 (558)
330 KOG1008 Uncharacterized conser 98.0 9.8E-07 2.1E-11 87.9 0.1 198 8-232 61-277 (783)
331 PF14583 Pectate_lyase22: Olig 98.0 0.0088 1.9E-07 58.3 26.1 224 33-286 16-276 (386)
332 PF08553 VID27: VID27 cytoplas 98.0 0.00052 1.1E-08 73.3 19.3 139 25-186 502-646 (794)
333 cd00216 PQQ_DH Dehydrogenases 98.0 0.0047 1E-07 64.5 26.2 193 17-235 61-324 (488)
334 PF06433 Me-amine-dh_H: Methyl 98.0 0.0082 1.8E-07 57.4 24.9 194 11-235 100-325 (342)
335 PF11768 DUF3312: Protein of u 98.0 0.00013 2.9E-09 73.0 13.1 73 115-189 257-331 (545)
336 COG3391 Uncharacterized conser 97.9 0.015 3.2E-07 58.6 28.0 189 88-289 88-290 (381)
337 PF06433 Me-amine-dh_H: Methyl 97.9 0.025 5.4E-07 54.1 26.7 245 12-291 42-329 (342)
338 PF02897 Peptidase_S9_N: Proly 97.9 0.036 7.7E-07 56.8 30.5 241 10-287 128-409 (414)
339 PF00780 CNH: CNH domain; Int 97.9 0.014 3.1E-07 55.9 26.0 232 14-296 4-269 (275)
340 KOG3621 WD40 repeat-containing 97.9 0.0001 2.2E-09 74.9 11.0 152 11-189 39-199 (726)
341 COG0823 TolB Periplasmic compo 97.9 0.0011 2.4E-08 67.0 18.3 134 96-233 218-361 (425)
342 KOG2114 Vacuolar assembly/sort 97.9 0.0021 4.7E-08 67.1 20.4 193 86-291 35-252 (933)
343 COG0823 TolB Periplasmic compo 97.9 0.0013 2.9E-08 66.3 18.9 157 116-285 191-361 (425)
344 COG3386 Gluconolactonase [Carb 97.9 0.003 6.5E-08 60.7 20.4 195 86-292 37-252 (307)
345 KOG1920 IkappaB kinase complex 97.9 0.0026 5.7E-08 69.0 21.5 188 86-283 80-323 (1265)
346 PF03178 CPSF_A: CPSF A subuni 97.9 0.01 2.2E-07 58.4 24.9 140 86-231 42-203 (321)
347 PF11768 DUF3312: Protein of u 97.8 0.00039 8.5E-09 69.8 13.9 81 4-115 260-340 (545)
348 KOG1645 RING-finger-containing 97.8 0.00011 2.3E-09 69.7 8.9 151 98-254 175-338 (463)
349 PF14583 Pectate_lyase22: Olig 97.8 0.009 1.9E-07 58.2 22.0 193 12-233 42-275 (386)
350 PF08553 VID27: VID27 cytoplas 97.8 0.0022 4.8E-08 68.6 19.3 141 86-229 493-646 (794)
351 PF08596 Lgl_C: Lethal giant l 97.7 0.0095 2.1E-07 59.7 21.9 216 9-235 5-295 (395)
352 PF03178 CPSF_A: CPSF A subuni 97.7 0.0062 1.3E-07 60.0 20.3 176 96-282 2-202 (321)
353 COG3391 Uncharacterized conser 97.7 0.022 4.7E-07 57.4 24.0 192 11-233 79-286 (381)
354 KOG3617 WD40 and TPR repeat-co 97.7 0.00032 6.9E-09 72.6 10.5 107 121-230 19-131 (1416)
355 PF08625 Utp13: Utp13 specific 97.6 1.2E-05 2.6E-10 67.0 0.4 68 492-560 49-117 (141)
356 KOG1008 Uncharacterized conser 97.6 1.3E-05 2.9E-10 80.1 0.7 197 67-282 58-275 (783)
357 KOG3621 WD40 repeat-containing 97.6 0.00079 1.7E-08 68.7 12.3 143 86-232 45-199 (726)
358 COG3386 Gluconolactonase [Carb 97.5 0.074 1.6E-06 51.3 24.0 143 118-272 111-275 (307)
359 PF04192 Utp21: Utp21 specific 97.5 0.00052 1.1E-08 63.0 8.6 99 473-572 111-235 (237)
360 PF05096 Glu_cyclase_2: Glutam 97.5 0.079 1.7E-06 49.1 22.5 175 12-218 51-249 (264)
361 PF06977 SdiA-regulated: SdiA- 97.5 0.082 1.8E-06 49.1 23.0 193 68-279 24-247 (248)
362 KOG4499 Ca2+-binding protein R 97.4 0.015 3.3E-07 51.6 16.5 203 86-297 27-256 (310)
363 PRK13616 lipoprotein LpqB; Pro 97.4 0.043 9.2E-07 58.1 22.5 124 97-229 380-524 (591)
364 PF08596 Lgl_C: Lethal giant l 97.4 0.036 7.8E-07 55.6 20.9 212 2-229 85-334 (395)
365 KOG4640 Anaphase-promoting com 97.4 0.00077 1.7E-08 67.9 8.9 93 66-169 21-115 (665)
366 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.035 7.5E-07 55.5 20.5 75 161-235 309-403 (415)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.025 5.3E-07 59.4 20.5 193 86-288 69-339 (527)
368 PF04053 Coatomer_WDAD: Coatom 97.3 0.02 4.4E-07 58.1 18.9 131 86-232 44-175 (443)
369 KOG2079 Vacuolar assembly/sort 97.3 0.0023 5E-08 68.5 12.3 93 86-178 99-194 (1206)
370 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.016 3.4E-07 45.6 13.6 102 6-142 2-109 (111)
371 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.23 4.9E-06 49.6 25.6 162 98-271 160-346 (353)
372 PF04841 Vps16_N: Vps16, N-ter 97.3 0.18 3.9E-06 51.2 24.7 97 125-228 186-285 (410)
373 TIGR03074 PQQ_membr_DH membran 97.2 0.082 1.8E-06 57.6 22.7 198 86-292 194-487 (764)
374 PF02897 Peptidase_S9_N: Proly 97.2 0.34 7.4E-06 49.6 27.9 188 86-282 135-357 (414)
375 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.8E-08 40.0 5.7 39 189-228 2-40 (40)
376 KOG4441 Proteins containing BT 97.1 0.066 1.4E-06 56.7 20.4 181 86-282 333-546 (571)
377 PF06977 SdiA-regulated: SdiA- 97.1 0.24 5.3E-06 46.1 24.0 187 10-227 26-247 (248)
378 KOG4640 Anaphase-promoting com 97.0 0.0035 7.5E-08 63.4 9.1 92 117-209 20-115 (665)
379 smart00320 WD40 WD40 repeats. 97.0 0.0025 5.4E-08 39.3 5.5 32 114-145 9-40 (40)
380 KOG2395 Protein involved in va 97.0 0.056 1.2E-06 53.9 16.8 140 86-231 345-501 (644)
381 COG3490 Uncharacterized protei 97.0 0.27 5.8E-06 45.4 19.8 180 86-280 125-346 (366)
382 PHA02713 hypothetical protein; 97.0 0.076 1.6E-06 56.4 19.5 182 86-284 304-535 (557)
383 PF05694 SBP56: 56kDa selenium 97.0 0.48 1E-05 47.0 23.9 138 98-235 159-347 (461)
384 PF00780 CNH: CNH domain; Int 96.9 0.24 5.1E-06 47.5 21.0 140 86-234 7-169 (275)
385 COG3490 Uncharacterized protei 96.9 0.086 1.9E-06 48.5 16.0 124 88-217 82-243 (366)
386 PF04841 Vps16_N: Vps16, N-ter 96.8 0.73 1.6E-05 46.8 26.9 34 199-233 216-249 (410)
387 KOG2395 Protein involved in va 96.8 0.029 6.3E-07 55.8 13.0 150 14-186 342-499 (644)
388 TIGR03074 PQQ_membr_DH membran 96.7 0.62 1.3E-05 51.0 24.1 206 17-235 194-482 (764)
389 PRK13616 lipoprotein LpqB; Pro 96.7 0.094 2E-06 55.6 17.3 101 118-226 350-472 (591)
390 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.13 2.8E-06 40.5 13.4 98 120-225 2-109 (111)
391 PF05694 SBP56: 56kDa selenium 96.3 0.98 2.1E-05 44.9 20.3 192 86-284 88-344 (461)
392 PHA03098 kelch-like protein; P 96.3 0.28 6E-06 52.2 18.2 142 86-233 295-467 (534)
393 KOG1897 Damage-specific DNA bi 96.2 2.5 5.3E-05 46.1 25.5 133 139-282 470-613 (1096)
394 PF12234 Rav1p_C: RAVE protein 96.2 0.19 4E-06 52.9 15.7 98 89-186 43-155 (631)
395 KOG2444 WD40 repeat protein [G 96.1 0.012 2.5E-07 52.3 5.7 140 88-231 32-178 (238)
396 COG3204 Uncharacterized protei 96.0 1.1 2.3E-05 42.0 17.9 156 68-232 88-265 (316)
397 KOG4499 Ca2+-binding protein R 95.8 0.32 6.8E-06 43.6 13.0 82 86-168 170-262 (310)
398 PF05096 Glu_cyclase_2: Glutam 95.8 1.7 3.6E-05 40.5 20.3 158 118-289 45-210 (264)
399 PF14870 PSII_BNR: Photosynthe 95.8 2 4.3E-05 41.3 20.5 153 115-279 142-301 (302)
400 KOG4441 Proteins containing BT 95.7 0.62 1.3E-05 49.5 17.3 184 86-284 285-501 (571)
401 PHA02713 hypothetical protein; 95.6 0.44 9.5E-06 50.6 16.2 142 86-234 352-537 (557)
402 PHA02790 Kelch-like protein; P 95.6 1.1 2.3E-05 46.8 18.8 179 86-284 272-472 (480)
403 COG3204 Uncharacterized protei 95.6 1.9 4.2E-05 40.3 17.9 118 114-232 82-212 (316)
404 PF12894 Apc4_WD40: Anaphase-p 95.4 0.057 1.2E-06 35.4 5.4 35 116-151 10-44 (47)
405 KOG2444 WD40 repeat protein [G 95.4 0.054 1.2E-06 48.2 6.9 102 86-187 70-177 (238)
406 PHA03098 kelch-like protein; P 95.4 1.2 2.5E-05 47.5 18.4 143 86-233 343-514 (534)
407 PF12894 Apc4_WD40: Anaphase-p 95.3 0.047 1E-06 35.8 4.7 33 4-39 12-44 (47)
408 KOG2079 Vacuolar assembly/sort 95.3 0.074 1.6E-06 57.6 8.7 100 128-230 98-203 (1206)
409 COG5167 VID27 Protein involved 95.1 0.48 1E-05 47.4 13.0 153 12-187 474-632 (776)
410 COG1520 FOG: WD40-like repeat 95.1 3.1 6.7E-05 41.8 19.8 202 86-292 68-278 (370)
411 KOG1897 Damage-specific DNA bi 95.1 2.3 4.9E-05 46.3 18.7 174 98-281 752-941 (1096)
412 COG3823 Glutamine cyclotransfe 94.7 2.2 4.7E-05 37.8 14.5 172 16-218 55-247 (262)
413 PF14761 HPS3_N: Hermansky-Pud 94.7 3 6.4E-05 37.4 16.0 137 87-229 29-213 (215)
414 PF15390 DUF4613: Domain of un 94.7 1.3 2.8E-05 45.5 15.0 146 118-281 20-185 (671)
415 PHA02790 Kelch-like protein; P 94.7 2.8 6.1E-05 43.7 18.5 140 86-233 319-473 (480)
416 PF10647 Gmad1: Lipoprotein Lp 94.4 4.7 0.0001 38.0 21.1 113 119-231 67-198 (253)
417 KOG3630 Nuclear pore complex, 94.3 0.23 4.9E-06 54.4 9.3 153 9-178 104-262 (1405)
418 KOG1916 Nuclear protein, conta 94.3 0.045 9.7E-07 58.0 4.0 118 67-192 182-328 (1283)
419 PF14870 PSII_BNR: Photosynthe 94.3 5.5 0.00012 38.4 20.3 138 86-227 156-301 (302)
420 PF10168 Nup88: Nuclear pore c 94.2 2.8 6.2E-05 45.6 17.5 35 115-149 144-181 (717)
421 PF10647 Gmad1: Lipoprotein Lp 94.2 5.1 0.00011 37.7 21.6 93 86-178 77-184 (253)
422 PRK10115 protease 2; Provision 94.0 12 0.00025 41.1 25.1 98 86-186 138-254 (686)
423 PRK13684 Ycf48-like protein; P 93.9 7.2 0.00016 38.5 20.4 151 117-281 172-330 (334)
424 PF09384 UTP15_C: UTP15 C term 93.8 0.13 2.8E-06 43.7 5.3 84 492-576 62-147 (148)
425 PF15390 DUF4613: Domain of un 93.6 3.9 8.6E-05 42.1 15.9 116 116-232 55-188 (671)
426 PF12234 Rav1p_C: RAVE protein 93.3 3.6 7.8E-05 43.6 15.8 114 159-280 29-154 (631)
427 PRK10115 protease 2; Provision 93.3 15 0.00033 40.2 31.5 188 11-230 132-344 (686)
428 PF14781 BBS2_N: Ciliary BBSom 93.2 3.8 8.1E-05 33.7 12.4 108 122-233 3-128 (136)
429 TIGR02604 Piru_Ver_Nterm putat 93.1 3.6 7.9E-05 41.2 15.4 59 118-177 124-201 (367)
430 PF10168 Nup88: Nuclear pore c 93.0 3.4 7.4E-05 45.0 15.7 27 119-146 86-112 (717)
431 TIGR02604 Piru_Ver_Nterm putat 92.8 5.7 0.00012 39.8 16.1 100 118-218 14-142 (367)
432 KOG2377 Uncharacterized conser 92.6 4.2 9E-05 40.4 13.8 144 88-231 35-186 (657)
433 PLN02193 nitrile-specifier pro 92.4 15 0.00034 38.2 19.6 144 86-233 176-354 (470)
434 KOG3630 Nuclear pore complex, 92.3 2.4 5.1E-05 46.9 13.0 126 91-218 118-262 (1405)
435 PF10313 DUF2415: Uncharacteri 92.2 0.46 9.9E-06 30.2 4.6 32 4-37 1-35 (43)
436 KOG1916 Nuclear protein, conta 91.8 0.48 1E-05 50.6 7.1 137 96-233 153-326 (1283)
437 PF02333 Phytase: Phytase; In 91.8 15 0.00032 36.6 22.4 192 15-232 66-292 (381)
438 PF07995 GSDH: Glucose / Sorbo 91.8 14 0.00031 36.3 26.7 29 9-39 5-33 (331)
439 PF07569 Hira: TUP1-like enhan 91.7 1.1 2.3E-05 41.1 8.6 28 125-152 18-45 (219)
440 PF14655 RAB3GAP2_N: Rab3 GTPa 91.6 1.7 3.8E-05 43.7 10.6 79 119-197 309-408 (415)
441 COG5167 VID27 Protein involved 91.5 3.2 7E-05 41.8 11.9 141 86-232 479-634 (776)
442 PF07250 Glyoxal_oxid_N: Glyox 91.5 2.1 4.5E-05 39.7 10.2 142 142-290 49-205 (243)
443 TIGR03548 mutarot_permut cycli 91.4 15 0.00033 36.0 18.9 103 128-233 72-197 (323)
444 PF08728 CRT10: CRT10; InterP 91.4 6.5 0.00014 42.2 14.9 101 86-186 114-245 (717)
445 PLN02153 epithiospecifier prot 90.8 18 0.0004 35.7 20.1 104 86-191 33-171 (341)
446 PF03022 MRJP: Major royal jel 90.3 18 0.00039 34.8 20.1 135 97-232 35-217 (287)
447 COG4257 Vgb Streptogramin lyas 90.2 16 0.00034 34.1 19.3 133 97-233 125-265 (353)
448 TIGR03118 PEPCTERM_chp_1 conse 90.0 18 0.00039 34.4 20.7 153 131-291 102-288 (336)
449 PRK13684 Ycf48-like protein; P 90.0 21 0.00046 35.2 17.6 110 116-229 213-330 (334)
450 KOG4460 Nuclear pore complex, 89.9 8.6 0.00019 39.0 13.2 94 119-233 105-201 (741)
451 PLN00033 photosystem II stabil 89.9 24 0.00052 35.7 18.7 144 121-279 242-396 (398)
452 PF10313 DUF2415: Uncharacteri 89.8 1.7 3.6E-05 27.7 5.5 31 118-148 1-34 (43)
453 PF10395 Utp8: Utp8 family; I 89.4 21 0.00046 38.1 16.4 169 4-196 130-314 (670)
454 PF07676 PD40: WD40-like Beta 89.1 1.9 4.1E-05 26.7 5.7 32 196-227 5-38 (39)
455 KOG2280 Vacuolar assembly/sort 88.6 7.6 0.00017 41.3 12.4 90 179-280 64-153 (829)
456 KOG1900 Nuclear pore complex, 88.5 7.7 0.00017 44.0 13.0 145 24-188 96-273 (1311)
457 PF07569 Hira: TUP1-like enhan 88.4 3 6.5E-05 38.2 8.7 61 86-147 22-95 (219)
458 PF07995 GSDH: Glucose / Sorbo 88.4 27 0.00059 34.4 24.3 89 89-178 15-132 (331)
459 PF11715 Nup160: Nucleoporin N 88.0 7.6 0.00016 41.4 12.9 73 86-158 158-259 (547)
460 PF03022 MRJP: Major royal jel 87.6 28 0.0006 33.5 19.2 191 9-216 4-252 (287)
461 PF10214 Rrn6: RNA polymerase 86.9 39 0.00085 37.7 17.8 112 118-232 146-278 (765)
462 PLN00033 photosystem II stabil 86.4 40 0.00086 34.1 17.2 107 116-227 279-396 (398)
463 PF10214 Rrn6: RNA polymerase 86.4 61 0.0013 36.2 22.1 115 65-188 145-277 (765)
464 TIGR02276 beta_rpt_yvtn 40-res 85.3 4.8 0.0001 25.2 6.1 40 127-167 1-41 (42)
465 KOG2280 Vacuolar assembly/sort 85.2 59 0.0013 35.0 18.6 145 86-234 94-250 (829)
466 KOG1983 Tomosyn and related SN 85.2 33 0.00072 39.3 16.2 29 9-37 39-67 (993)
467 PRK14131 N-acetylneuraminic ac 84.7 47 0.001 33.4 17.6 13 97-109 107-119 (376)
468 COG4590 ABC-type uncharacteriz 84.6 3.8 8.3E-05 40.6 7.4 198 68-281 115-345 (733)
469 KOG2247 WD40 repeat-containing 84.3 0.19 4.2E-06 49.8 -1.3 141 9-178 38-178 (615)
470 PF14761 HPS3_N: Hermansky-Pud 84.0 32 0.00069 31.0 16.7 101 130-233 29-166 (215)
471 PF08728 CRT10: CRT10; InterP 84.0 45 0.00097 36.2 15.5 100 128-229 113-245 (717)
472 KOG1896 mRNA cleavage and poly 83.6 88 0.0019 35.7 17.9 142 86-233 1046-1216(1366)
473 TIGR02276 beta_rpt_yvtn 40-res 83.5 5.6 0.00012 24.9 5.8 29 169-197 1-32 (42)
474 TIGR03118 PEPCTERM_chp_1 conse 83.3 44 0.00094 32.0 13.8 117 162-282 25-170 (336)
475 COG4590 ABC-type uncharacteriz 82.5 24 0.00051 35.4 11.8 162 4-191 221-390 (733)
476 PF07250 Glyoxal_oxid_N: Glyox 82.2 31 0.00067 32.0 12.1 115 86-200 78-210 (243)
477 COG4257 Vgb Streptogramin lyas 81.6 47 0.001 31.2 16.4 184 86-283 73-263 (353)
478 KOG1900 Nuclear pore complex, 81.5 90 0.002 36.0 17.0 139 92-232 95-274 (1311)
479 PF14781 BBS2_N: Ciliary BBSom 81.4 29 0.00063 28.6 13.2 111 166-287 5-130 (136)
480 PF08801 Nucleoporin_N: Nup133 81.2 65 0.0014 33.0 15.6 32 200-232 190-221 (422)
481 PF12768 Rax2: Cortical protei 80.5 50 0.0011 31.5 13.2 93 96-190 16-126 (281)
482 KOG2377 Uncharacterized conser 80.4 69 0.0015 32.3 15.4 120 2-149 65-187 (657)
483 PF14727 PHTB1_N: PTHB1 N-term 80.1 73 0.0016 32.4 21.7 182 86-283 145-361 (418)
484 PF13449 Phytase-like: Esteras 80.1 63 0.0014 31.7 17.6 102 116-218 18-165 (326)
485 PF07676 PD40: WD40-like Beta 79.0 2.7 6E-05 26.0 3.0 26 346-371 5-30 (39)
486 KOG2247 WD40 repeat-containing 78.0 0.31 6.8E-06 48.4 -2.3 131 89-226 49-184 (615)
487 COG5290 IkappaB kinase complex 77.8 59 0.0013 35.2 13.5 91 121-212 250-349 (1243)
488 PF12657 TFIIIC_delta: Transcr 77.7 20 0.00043 31.4 9.1 30 161-190 6-35 (173)
489 COG1520 FOG: WD40-like repeat 76.0 90 0.0019 31.3 25.4 154 16-198 111-279 (370)
490 TIGR03548 mutarot_permut cycli 76.0 82 0.0018 30.8 17.7 104 86-191 73-198 (323)
491 PF14269 Arylsulfotran_2: Aryl 75.8 80 0.0017 30.6 20.2 109 120-229 59-219 (299)
492 PF02333 Phytase: Phytase; In 75.5 92 0.002 31.1 22.8 200 69-284 56-292 (381)
493 PF03088 Str_synth: Strictosid 75.1 27 0.00058 26.7 7.8 43 135-178 33-75 (89)
494 PF05935 Arylsulfotrans: Aryls 75.1 1.1E+02 0.0024 31.9 17.3 108 89-199 161-313 (477)
495 KOG1898 Splicing factor 3b, su 75.0 1.5E+02 0.0033 33.4 17.2 170 98-281 855-1047(1205)
496 smart00564 PQQ beta-propeller 74.6 8.2 0.00018 22.6 4.2 27 86-112 6-32 (33)
497 PF11635 Med16: Mediator compl 74.6 1E+02 0.0023 34.3 15.5 88 66-155 181-297 (753)
498 TIGR03606 non_repeat_PQQ dehyd 74.4 1.1E+02 0.0024 31.5 14.4 28 10-37 34-61 (454)
499 KOG4460 Nuclear pore complex, 73.2 98 0.0021 31.9 13.1 80 201-288 105-204 (741)
500 TIGR03606 non_repeat_PQQ dehyd 73.2 1E+02 0.0022 31.8 13.8 100 117-218 29-164 (454)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-51 Score=399.15 Aligned_cols=503 Identities=18% Similarity=0.231 Sum_probs=367.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCC-CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+..+| ..++|+..|.++|.|+.. |.+-||++++...+...++|...+.++.|+++
T Consensus 306 s~~~I--~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD---------------------- 361 (893)
T KOG0291|consen 306 SDQKI--LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD---------------------- 361 (893)
T ss_pred cccee--eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence 44677 566999999999998864 89999999999999999999999998888888
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++|+.||+|+|||...|-|+.++ ..|++.|+++.|+..|+.+++.+.||+|+.||+..++..++|.....
T Consensus 362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 362 -----GQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred -----CcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 899999999999999999999999777 67999999999999999999999999999999999999999987654
Q ss_pred -CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 161 -~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+..|++..|.|.++.+|+ -.|++|++++|+.+..+.||.+||.++.|+|++..|++++ +|++|++||+-.....
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT- 513 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence 789999999999999998 4899999999999999999999999999999999999987 9999999999776322
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
+.++....... .+.|. |+|+.|++++.||.|.+||.+.+.++..+++.+......- ..+...+...-..
T Consensus 514 ---vEtl~i~sdvl-~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~--~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 514 ---VETLEIRSDVL-AVSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK--ETDRITAENSAKG 582 (893)
T ss_pred ---eeeEeecccee-EEEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc--ccceeehhhcccC
Confidence 23454554444 35565 9999999999999999999999988877766544322111 0000000000111
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEE----ecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCC
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKI----LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRAN 390 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~ 390 (579)
-.+..+.|++||.++++.|...+-|.-.+ .... ..++.+.|-||... .-+..++.+.+|. +++ ++..
T Consensus 583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk-fqiS~N~sLdg~~e-----fln~rkmtEfG~~~LiD~-e~~~ 655 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK-FQISDNRSLDGVLE-----FLNRRKMTEFGNMDLIDT-EESD 655 (893)
T ss_pred CceEEEEEcCCCCEEEecCCcccEEEEECchhheeee-EEeccccchhHHHH-----HhccccccccCCcccccc-cccc
Confidence 12334566666666666665544332111 1111 23333445555444 3344556665543 222 1111
Q ss_pred c---cccccCCccccchhhhhhccccC----CCCccc-cccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCC
Q 008041 391 A---EDAVLPLPKILDSYDKKNRHQNL----SSDLDE-VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI 462 (579)
Q Consensus 391 ~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~ 462 (579)
. .+..+|+.+.++.+.|+.|+.-+ .+.++- .-+..+++|..+.++.+.- ..++-+-+.+.|.+...+++..
T Consensus 656 ~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~-~FDPf~LD~~vTPe~v~~al~~ 734 (893)
T KOG0291|consen 656 LEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTI-LFDPFDLDVDVTPESVREALRE 734 (893)
T ss_pred ccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCce-EEcccccccccCHHHHHHHHhc
Confidence 1 24679999999988887666310 000000 0022344444455443321 2222333345566655555533
Q ss_pred CCCCCCCCCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 008041 463 LSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF 533 (579)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ 533 (579)
..+..+|+.+| +++...|.++|+.++..||..|+.+||++|++-+ .++.+.+++++|+++
T Consensus 735 ----------qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l-~~s~HieF~l~W~~~ 803 (893)
T KOG0291|consen 735 ----------QEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFL-ENSPHIEFYLRWLRA 803 (893)
T ss_pred ----------chHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHH-hcCchHHHHHHHHHH
Confidence 25677888888 4667789999999999999999999999999644 555568999999999
Q ss_pred HHHHhcccccCCCC-hhHHHHHHHHHHHHhhhhh
Q 008041 534 ILVNHGHHLLSQES-LTPMLSSLYKVRKKKLFAS 566 (579)
Q Consensus 534 ll~~h~~~l~~~~~-l~~~l~~l~~~~~~r~~~~ 566 (579)
||.+||.++..... +.++|.+|++.|.+..+.+
T Consensus 804 il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l 837 (893)
T KOG0291|consen 804 ILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDL 837 (893)
T ss_pred HHHHhhhhhhccceehhhHHHHHHHHHHHHHHHH
Confidence 99999999988774 5679999999999877433
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-47 Score=374.06 Aligned_cols=505 Identities=16% Similarity=0.195 Sum_probs=388.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++|| +.++|+|.|..||+|+.||.++|||+..+.+...|++|.+.+..+.|.+...
T Consensus 104 He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~--------------------- 160 (775)
T KOG0319|consen 104 HEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN--------------------- 160 (775)
T ss_pred cCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc---------------------
Confidence 68999 8889999999999999999999999999999999999999999988887711
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----- 156 (579)
..+|++|..|+.+++||+.+..........|.+.|+++.|.+|+..+++++.|..+.+||+.+.+...++.
T Consensus 161 ----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 161 ----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred ----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhe
Confidence 35689999999999999996655224447899999999999999999999999999999985433211111
Q ss_pred --------------------------------------------------------------------------------
Q 008041 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV 316 (775)
T ss_pred eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe
Confidence
Q ss_pred ----------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008041 157 ----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (579)
Q Consensus 157 ----------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~ 188 (579)
+|...|.+++...+|-+|++|+ +++++|.+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 5667777888666788999998 7999997744
Q ss_pred C----eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeee----eeecCceeEEeEEecCCc
Q 008041 189 H----KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNGG 259 (579)
Q Consensus 189 ~----~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 259 (579)
+ -++....+|.+.|.+++++..+. +|++++ .|+++++|++...+.......+ ....|+..+.++.++
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia--- 472 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA--- 472 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEec---
Confidence 3 23556689999999999987665 566665 8999999999884332222222 344677788899998
Q ss_pred ccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC
Q 008041 260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK 339 (579)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~ 339 (579)
|+.+.+++||+|.+.+||+++.+..+..+.+++..+.+.. |++..+ .+++++.|+.+++ |.-..+
T Consensus 473 --~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-Fs~~dq----~laT~SgD~TvKI--------W~is~f 537 (775)
T KOG0319|consen 473 --PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-FSKNDQ----LLATCSGDKTVKI--------WSISTF 537 (775)
T ss_pred --CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-eccccc----eeEeccCCceEEE--------EEeccc
Confidence 9999999999999999999999999999999998888877 787777 8999999886665 335578
Q ss_pred ceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccCCccccchhhhhhccccCCCC
Q 008041 340 PSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSD 417 (579)
Q Consensus 340 ~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (579)
.|.+++.||+..|..+.|-.+|.+| +|++.||.+|+|++.+. ..+++. .+|+.|+....- ..
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD~--H~DrvWaL~~~~-~~------------ 601 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLDA--HNDRVWALSVSP-LL------------ 601 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhhh--ccceeEEEeecC-cc------------
Confidence 8999999999999999999999999 99999999999999754 455553 235555433321 00
Q ss_pred ccccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCCCCCCCCCCCCchhhhhhccce---e----ecccCC
Q 008041 418 LDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----FETNIP 490 (579)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l---~----l~~~~~ 490 (579)
.+...-+.+..+.-|++.++++..++.+.++.-.+|-++|+.....+++..|.-|+..|..+. . +.+.++
T Consensus 602 ---~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~ 678 (775)
T KOG0319|consen 602 ---DMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERD 678 (775)
T ss_pred ---ceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCC
Confidence 011111344556677777666555554444444445555544334555556656666666555 2 334456
Q ss_pred hhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-hcccccCCCChhHHHHHHHHHHHH---hh---
Q 008041 491 VKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN-HGHHLLSQESLTPMLSSLYKVRKK---KL--- 563 (579)
Q Consensus 491 ~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~-h~~~l~~~~~l~~~l~~l~~~~~~---r~--- 563 (579)
++.+..+|.+|...+...||+++. .|++|++++...++.|+.+|+. -...|+..|....+++.|.--.++ |+
T Consensus 679 ~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~~ 757 (775)
T KOG0319|consen 679 PEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDRL 757 (775)
T ss_pred cHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHHH
Confidence 889999999999999999999999 8999999999999999999984 566788999888888888766663 33
Q ss_pred -hhhhhhhce
Q 008041 564 -FASAFTCFI 572 (579)
Q Consensus 564 -~~~~~~~~~ 572 (579)
+.+++..|.
T Consensus 758 ~~~~~lLdf~ 767 (775)
T KOG0319|consen 758 VQDSALLDFT 767 (775)
T ss_pred hhhhHHHHHh
Confidence 555666554
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-47 Score=342.25 Aligned_cols=323 Identities=17% Similarity=0.222 Sum_probs=276.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| +|++|+|+|.+||+|+.|.++|+||+.+.....+.++|...+.++.++|+
T Consensus 114 H~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD----------------------- 168 (480)
T KOG0271|consen 114 HGEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD----------------------- 168 (480)
T ss_pred CCCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-----------------------
Confidence 35788 99999999999999999999999999999999999988877776666555
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
+..|++|+.+|.|++||+.+|+.+.+.+.+|...|++++|.| ..+++++++.||.|+|||+..+.++..+.
T Consensus 169 ----gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 169 ----GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred ----cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 788999999999999999999999898999999999999976 56789999999999999999999999999
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----------cCCCE----------
Q 008041 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGKY---------- 213 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-----------~~~~~---------- 213 (579)
+|..+|+|+.|--+| ++++|+ ++|++|+...|+++++++||...|+.++.+ |.+++
T Consensus 245 gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 999999999998554 888888 899999999999999999999999999876 33433
Q ss_pred ---------------EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041 214 ---------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 214 ---------------l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (579)
+++++ +|.++.+|+....++. +..+..+...+..+.|+ ||+++||+++.|..|++
T Consensus 324 Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkp----i~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKP----ITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKL 393 (480)
T ss_pred HHHHHHHhhccCcceeEEec-CCceEEEecccccccc----hhhhhchhhheeeEEEC-----CCccEEEEeecccceee
Confidence 88887 7999999998776532 34455666677778888 99999999999999999
Q ss_pred EEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
||..+|+.+..+.++...+-... ++.|.+ .+++++.|..++.++ ...+.....+.||..+|.++.|+
T Consensus 394 W~g~tGk~lasfRGHv~~VYqva-wsaDsR----LlVS~SkDsTLKvw~--------V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVA-WSADSR----LLVSGSKDSTLKVWD--------VRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEE-eccCcc----EEEEcCCCceEEEEE--------eeeeeecccCCCCCceEEEEEec
Confidence 99999999988887765544433 566766 889999987655543 22333444677899999999999
Q ss_pred CCcceeeccccceeccccee
Q 008041 359 QDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~ 378 (579)
|||..+ +||+.|+.+++|.
T Consensus 461 pDG~rV-~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 PDGQRV-ASGGKDKVLRLWR 479 (480)
T ss_pred CCCcee-ecCCCceEEEeec
Confidence 999999 9999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-44 Score=333.21 Aligned_cols=282 Identities=18% Similarity=0.218 Sum_probs=254.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+.|| ..|.||+|++.|||||.+|.++||+..++..++.|.+|...+..+.|+|. +
T Consensus 174 d~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~------------------~---- 229 (459)
T KOG0272|consen 174 DTRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPV------------------D---- 229 (459)
T ss_pred CCCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccC------------------C----
Confidence 35788 77799999999999999999999999999999999988876665555554 2
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.+..+++|+.||.+++|++.+...+..+ .+|...|..++|+|+|++|.|++.|.+=++||+.++..+....+|..+
T Consensus 230 ---~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 230 ---SDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ---CccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 0556999999999999999998887666 689999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
|.+++|+|||.++++|+ ..-+|||+++|+++..+.+|..+|.++.|+|+|-.+++|| .|++++|||++..+.
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~----- 379 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE----- 379 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc-----
Confidence 99999999999999999 6779999999999999999999999999999999999987 799999999999763
Q ss_pred eeeeecCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcc
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (579)
.++++.+...++-+.|+ | .|.+|++++.|+++++|...++..++
T Consensus 380 ly~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k------------------------------ 424 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK------------------------------ 424 (459)
T ss_pred ceecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch------------------------------
Confidence 57888888888889998 6 78999999999999999876655432
Q ss_pred ccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+.||++.|.++..++||+++ +|+|.|+++|+|.
T Consensus 425 -------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 -------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR 458 (459)
T ss_pred -------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence 345899999999999999999 9999999999994
No 5
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-43 Score=344.86 Aligned_cols=437 Identities=18% Similarity=0.237 Sum_probs=319.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.||.+ +||.|...+++|+ .+.|+||+..+.++++++... ..-|..+.|.
T Consensus 373 R~dVRsl--~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg------ 423 (888)
T KOG0306|consen 373 RSDVRSL--CVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG------ 423 (888)
T ss_pred hhheeEE--EeecCceeeeecC-CCcEEEEEccCcceeEEeccc--------------------cEEEEEecCC------
Confidence 4568666 9999998888887 468999999999999988632 2223344443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----Cceee--Ee
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLG--KF 155 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~--~~ 155 (579)
+.++++|..+|.+.+||+.....+.++ ++|.+.|++++.+||+..+++||.|.+|++||+.- |...+ .+
T Consensus 424 ---d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 424 ---DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred ---CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 778999999999999999999887555 68999999999999999999999999999999641 21111 11
Q ss_pred e-----cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 156 R-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 156 ~-----~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
+ .-...|.|+.+||||++++++- ++++||-+++-+....+.||.-||.|+..+||++.+++|+ .|++|++|-
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWG 578 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWG 578 (888)
T ss_pred ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEec
Confidence 1 1346899999999999999998 8999999999999999999999999999999999999988 799999999
Q ss_pred cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccc
Q 008041 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
++-+.+ ...+-.|...+.++.|- |..+.+++++.||.|+-||.+..+.+
T Consensus 579 LdFGDC-----HKS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i--------------------- 627 (888)
T KOG0306|consen 579 LDFGDC-----HKSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI--------------------- 627 (888)
T ss_pred cccchh-----hhhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh---------------------
Confidence 999874 35555666666677777 89999999999999999997554433
Q ss_pred ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeecc
Q 008041 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDR 388 (579)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~ 388 (579)
+++.+|...|++++.+|+|.++ +|+|+|.++++|+..+..-.+++
T Consensus 628 ----------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~lEe 672 (888)
T KOG0306|consen 628 ----------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILILEE 672 (888)
T ss_pred ----------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceeeeh
Confidence 2455788899999999999999 99999999999998654444432
Q ss_pred CCccccccCCccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCCCC----
Q 008041 389 ANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS---- 464 (579)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~~~---- 464 (579)
..+.+.. ..-+.. . .+.+...++...++.. +...-..-+....-+..++++....
T Consensus 673 ekE~ErE-------e~yE~l--~----~~~e~~~~~~~~~g~~--------~~~skkTieSvk~aE~i~ea~di~~~e~~ 731 (888)
T KOG0306|consen 673 EKEGERE-------EEYETL--L----ASEEVVAGDGSADGDA--------GVASKKTIESVKSAERILEALDIGREELT 731 (888)
T ss_pred hhhhhhH-------HHHHHh--h----hhcccccCCCcccccc--------cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000 000000 0 0000000000000000 0000000000011122334444221
Q ss_pred CCCCC-CCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 008041 465 NKDDL-LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFI 534 (579)
Q Consensus 465 ~~~~~-~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~l 534 (579)
...+. ++ .+. .++++|+ +.+..++...++.++.-||++|++.+|+++.+ +..++.+.+++++.+.+|
T Consensus 732 ~~ee~~~g-~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~-~~q~~~~veLv~rv~~fL 808 (888)
T KOG0306|consen 732 QLEEYSPG-HPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE-CIQRKSKVELVCRVLFFL 808 (888)
T ss_pred hHHhhcCC-CCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH-HHcCCCcceeEeeeeeeh
Confidence 11111 11 122 4666666 34556788899999999999999999999985 445556799999999999
Q ss_pred HHHhcccccCCCChhHHHHHHHHHHHHhh
Q 008041 535 LVNHGHHLLSQESLTPMLSSLYKVRKKKL 563 (579)
Q Consensus 535 l~~h~~~l~~~~~l~~~l~~l~~~~~~r~ 563 (579)
++.|.+++.+.++++|.|..+...++..+
T Consensus 809 ~rih~~~it~~~~~kp~l~~i~s~l~~~v 837 (888)
T KOG0306|consen 809 LRIHHKQITAHKNMKPLLEKIKSKLREIV 837 (888)
T ss_pred hhhhhhhhccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=277.67 Aligned_cols=280 Identities=16% Similarity=0.205 Sum_probs=246.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.| .++.|++|+++++++|.||.+.|||..+...++.+.-....+-..+|+|.
T Consensus 56 ~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------- 108 (343)
T KOG0286|consen 56 NKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------- 108 (343)
T ss_pred cce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-------------------------
Confidence 456 67799999999999999999999999999888888777777777777776
Q ss_pred cCCcEEEEEECCCeEEEEEccCC--e---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~--~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
+++++.|+-|+...||++.+. + .+.+.+.+|++-+.|+.|-+| .+|++++.|.+..+||+++|+.+..|.+|
T Consensus 109 --g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 --GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred --CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCC
Confidence 899999999999999999855 2 344556899999999999885 47889999999999999999999999999
Q ss_pred CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 159 ~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.+.|.+++++| +++.+++|+ +..++||++.+.++++|.+|.+.|+++.|.|+|.-|++++ +|++.++||++..+..
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQEL 264 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEE
Confidence 99999999999 999999998 8999999999999999999999999999999999999987 7999999999998755
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
.++........+..+.|+ ..|++|++|..|.++.+||.-.++..
T Consensus 265 ---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~v---------------------------- 308 (343)
T KOG0286|consen 265 ---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGERV---------------------------- 308 (343)
T ss_pred ---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccceE----------------------------
Confidence 555555555667788888 89999999999999999995333221
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
..+.+|++.|.++..+|||.-+ +|||.|.++|+|.
T Consensus 309 ---------------------------g~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ---------------------------GVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA 343 (343)
T ss_pred ---------------------------EEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence 1345899999999999999999 9999999999994
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-39 Score=295.32 Aligned_cols=275 Identities=20% Similarity=0.263 Sum_probs=219.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~ 164 (579)
+..+++|+.|.++++||+.+....... ++|...|.|++|+|||+.|++|+.||+|++||..+|+++. .+.+|...|++
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~ 205 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA 205 (480)
T ss_pred CceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence 788999999999999999998887655 7899999999999999999999999999999999997765 59999999999
Q ss_pred EEEcc-----CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 165 MAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 165 l~~~p-----~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
++|.| .++++++++ |.|+|||+..++++..+.+|+.+|+|+.|--+| ++++++ .|++|++|+...+...
T Consensus 206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS-~DrtIkvw~a~dG~~~-- 281 (480)
T KOG0271|consen 206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS-QDRTIKVWRALDGKLC-- 281 (480)
T ss_pred EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC-CCceEEEEEccchhHH--
Confidence 99976 677899988 999999999999999999999999999997665 777776 8999999999887532
Q ss_pred eeeeeeecCceeEEeEEec------CCcccCCC-------------------------cEEEEEEcCCeEEEEEcCCce-
Q 008041 238 SCVLAMEHPAVFMDCRCID------NGGVDDAG-------------------------LYVLAISETGVCYIWYGQNIE- 285 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------------------------~~l~~~~~dg~i~iwd~~~~~- 285 (579)
..+..+...+..+..+ .+.|+|.+ ..+++|+.|+++.+|+....+
T Consensus 282 ---r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 282 ---RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred ---HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 2333333333332222 11122333 459999999999999865443
Q ss_pred eecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008041 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (579)
.+....++...+... .|+|+++ +|++++||..++++++ .....+..+.||-..|.+++||.|.++|
T Consensus 359 pi~rmtgHq~lVn~V-~fSPd~r----~IASaSFDkSVkLW~g--------~tGk~lasfRGHv~~VYqvawsaDsRLl- 424 (480)
T KOG0271|consen 359 PITRMTGHQALVNHV-SFSPDGR----YIASASFDKSVKLWDG--------RTGKFLASFRGHVAAVYQVAWSADSRLL- 424 (480)
T ss_pred chhhhhchhhheeeE-EECCCcc----EEEEeecccceeeeeC--------CCcchhhhhhhccceeEEEEeccCccEE-
Confidence 333222332222222 3899999 9999999987777553 2334455788999999999999999999
Q ss_pred ccccceecccceeeeec
Q 008041 366 MSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 366 ~s~s~d~~~~~w~~~~~ 382 (579)
+|||.|.++|+|++..+
T Consensus 425 VS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTK 441 (480)
T ss_pred EEcCCCceEEEEEeeee
Confidence 99999999999999543
No 8
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=285.39 Aligned_cols=473 Identities=31% Similarity=0.405 Sum_probs=326.5
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec-----------cccccc
Q 008041 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-----------DRKKKR 82 (579)
Q Consensus 14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----------~~~~~~ 82 (579)
+|.+.|+|....||.++|||+..++..++|.. ..+++..+++..|.-. ....+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p---------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP---------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc---------------chhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 45678999999999999999999999998862 3555666777777521 111222
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+...++.|+..|.|.+|+...|+..+++. ..|.++|.++.++.+-..|++++.|+.+..|+....+.++.+++....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 3357889999999999999999999988876 679999999999998889999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecC-----CCEEEEEecCCCeEEEEEcCC-Cccc
Q 008041 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ 235 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~s~~~~d~~i~vwd~~~-~~~~ 235 (579)
+.+++++|||+++++++++|++||+++++.+.+|+||.++|+++.|..+ |.+++++...++.+.+|-... .+..
T Consensus 147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 9999999999999999999999999999999999999999999999877 788888776778899998876 4444
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCc--EEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
...+.+..++.........- .++. +.++.+..+.+..|...+...+...++.++.....+ +.+ -
T Consensus 227 s~~~sl~~~dipv~~ds~~~------ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~--~s~------g 292 (541)
T KOG4547|consen 227 SLSCSLTVPDIPVTSDSGLL------EDGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD--SSK------G 292 (541)
T ss_pred hhheeeccCCCCeEeccccc------cccccceEEeeeccCceeeeccccHHHHhcCccccccceeee--ccc------c
Confidence 45677777676665554433 2333 555555545555555555544444444443332221 111 2
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe-ecCCcceeeccccceecccceeeeeceeeeccCCcc
Q 008041 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN-CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAE 392 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~-~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~ 392 (579)
++++.+... ..+.++.||....+.++.+......-..+. ....|... ++.....+...+..
T Consensus 293 ~~a~~~~~~----~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~---------~~~~~~k~~~rqv~----- 354 (541)
T KOG4547|consen 293 FLAALFGID----KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK---------LKLVTSKEGKRQVV----- 354 (541)
T ss_pred hhhhhcccc----hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc---------cceeeeecccceee-----
Confidence 444444321 135667788777766666554332222221 11111111 01111110000000
Q ss_pred ccccCCccccchhhhhhccccCCCCccccccccccchhhhhhhh--ccCcccccccCCcCCCHHHHHHhcCCCCCCC---
Q 008041 393 DAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFME--IKDDKVEVEADSQTVCMEDRLRSLGILSNKD--- 467 (579)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--- 467 (579)
..+.++... +..+...+ .++....+...+.|..++.|+.++.......
T Consensus 355 -----------~n~~~k~~~----------------~~~~q~~~p~~~~l~v~~~~g~iEv~~earl~~l~i~~~~~~~k 407 (541)
T KOG4547|consen 355 -----------LNSVAKLGE----------------AEVIQEEPPLTEDLPVLTKGGDIEVSTEARLSALDINLTSNADK 407 (541)
T ss_pred -----------cchhhhhcc----------------hhhhcccCcchhcchhhhcCCcceeeehhhhhhcccccccccch
Confidence 000000000 00000000 0011111234556778888988886654332
Q ss_pred CCCCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHh
Q 008041 468 DLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538 (579)
Q Consensus 468 ~~~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h 538 (579)
...........+.|+| .++..++++.|+.|+.|+|+.++.+||+.++++|++++++++.+++|+++++..|
T Consensus 408 ~~~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h 487 (541)
T KOG4547|consen 408 SDESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSH 487 (541)
T ss_pred hhhhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcc
Confidence 2223345566788888 4778889999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChhHHHHHHHHHHHHhh
Q 008041 539 GHHLLSQESLTPMLSSLYKVRKKKL 563 (579)
Q Consensus 539 ~~~l~~~~~l~~~l~~l~~~~~~r~ 563 (579)
..||+++|+ .++.|+..+++++
T Consensus 488 ~~yl~sv~~---~~~~l~~~~~~~~ 509 (541)
T KOG4547|consen 488 NSYLSSVPD---QLETLSGKMQKDL 509 (541)
T ss_pred cceeecCcc---hhhHHHHHHHHHH
Confidence 999999999 5555555555554
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-34 Score=268.40 Aligned_cols=358 Identities=16% Similarity=0.167 Sum_probs=260.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccc----ccc-ccccceEEeee
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----EHL-SVDYTCMKWLS 75 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~w~~ 75 (579)
+.++ ....|||.|-|+|+|...|+|||||+.... +..+|+...+++..+.|..+-.+ |.- ..-.....|.+
T Consensus 59 ~~~v--tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS 136 (603)
T KOG0318|consen 59 AHQV--TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS 136 (603)
T ss_pred ccee--EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence 3456 444999999999999999999999987533 45677778888888888765111 000 11223344543
Q ss_pred cc------ccc-------ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 008041 76 VD------RKK-------KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (579)
Q Consensus 76 ~~------~~~-------~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~ 142 (579)
.+ .+. .+...+-.+++|+.|+.|.+|+-..-+..... ..|..-|.|+.|+|||..|++++.||++.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEE
Confidence 22 000 11123567999999999999997776665444 67999999999999999999999999999
Q ss_pred EEeCCCCceeeEee---cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE------------------------
Q 008041 143 EIDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------ 193 (579)
Q Consensus 143 iwd~~~~~~~~~~~---~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~------------------------ 193 (579)
+||=.+|+.+..+. +|++.|.+++|+||++.+++++ .+++|||+.+.+++.
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lIt 295 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLIT 295 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEE
Confidence 99999999999988 8999999999999999999998 799999997764432
Q ss_pred -------------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc------ee---------
Q 008041 194 -------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------SC--------- 239 (579)
Q Consensus 194 -------------------~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~------~~--------- 239 (579)
.+.||...|+++..+|++++|++++ .||.|.-|+..++...+. ..
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES 374 (603)
T ss_pred EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCC
Confidence 4568999999999999999999987 799999999876532100 00
Q ss_pred --ee------------------------eeecC-----------------------------------ceeEEeEEecCC
Q 008041 240 --VL------------------------AMEHP-----------------------------------AVFMDCRCIDNG 258 (579)
Q Consensus 240 --~~------------------------~~~~~-----------------------------------~~~~~~~~~~~~ 258 (579)
++ .+.+. .....+++
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA---- 450 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA---- 450 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE----
Confidence 00 00000 00111222
Q ss_pred cccCCCcEEEEEEcCCeEEEEEcCCceeecc--cCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCC
Q 008041 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (579)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~ 336 (579)
++|++..+++|++||.|++|.+..+..... ...++-.+.... ++|+++ +++++...+.+-++ .-.
T Consensus 451 -v~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~----yla~~Da~rkvv~y-------d~~ 517 (603)
T KOG0318|consen 451 -VSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGA----YLAAGDASRKVVLY-------DVA 517 (603)
T ss_pred -EcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCc----EEEEeccCCcEEEE-------Ecc
Confidence 349999999999999999999876553221 122222222222 788888 88888875533332 212
Q ss_pred CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008041 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
..+........|...|.+++|||+..++ +|||-|..+.+|++.+.
T Consensus 518 s~~~~~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 518 SREVKTNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cCceecceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccCh
Confidence 2223344566799999999999999999 99999999999999754
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=249.40 Aligned_cols=274 Identities=14% Similarity=0.194 Sum_probs=221.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
.-+|+++|.|.+||+|...+|.|..+++...+-++.+...++ .. .+++....
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~-~LAaa~~q 61 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KK-DLAAAGNQ 61 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cc-hhhhccCC
Confidence 358999999999999999999999999877766666666554 33 34455567
Q ss_pred eEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEE
Q 008041 97 DVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (579)
Q Consensus 97 ~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~ 175 (579)
.|++||+.+++. ....+.+|+..|+++.|..+|+.+++||.||+++|||++...+-+.+. |..+|+++..+|+...|+
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI 140 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence 899999998875 334447899999999999999999999999999999999877666666 668999999999999999
Q ss_pred EEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-ceeeeeee-cCceeE
Q 008041 176 TAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFM 250 (579)
Q Consensus 176 ~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~ 250 (579)
+|+ |.|++||+.+..+...+ +....+|.++...|||++++.+. ..|..++|++-..+..+ ...+..+. |....+
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEE
Confidence 998 99999999988766655 34457899999999999998876 68999999997754321 12233333 445555
Q ss_pred EeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEE
Q 008041 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (579)
.|. ++ ||+++|++++.|.+++||+.++. ...
T Consensus 220 ~C~-lS-----Pd~k~lat~ssdktv~iwn~~~~-~kl------------------------------------------ 250 (311)
T KOG0315|consen 220 RCL-LS-----PDVKYLATCSSDKTVKIWNTDDF-FKL------------------------------------------ 250 (311)
T ss_pred EEE-EC-----CCCcEEEeecCCceEEEEecCCc-eee------------------------------------------
Confidence 555 44 99999999999999999987655 100
Q ss_pred EEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
-..+.+|...++.++||.||.|| +++|.|+..++|++.+
T Consensus 251 -----------e~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 251 -----------ELVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLSA 289 (311)
T ss_pred -----------EEEeecCCceEEeeeeccCccEE-EecCCCCceeeccccc
Confidence 01445788899999999999999 9999999999999853
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-36 Score=277.09 Aligned_cols=237 Identities=17% Similarity=0.213 Sum_probs=214.9
Q ss_pred CCcccceEEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++.| .++.|+|. +.-+|+|+.||++++|++.+...+..+.+|...+..+.|+|.
T Consensus 217 ~~~v--~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs---------------------- 272 (459)
T KOG0272|consen 217 TSRV--GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS---------------------- 272 (459)
T ss_pred ccce--eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC----------------------
Confidence 4556 55599997 569999999999999999999999999999888888888877
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.+|.+++-|.+-++||+.++..+ ....||..+|.+++|+|||..++||+.|..-++||+++|+++..+.+|..
T Consensus 273 -----G~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 273 -----GKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred -----Cceeeecccccchhhcccccchhh-HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 899999999999999999999876 34489999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
+|.+++|+|+|-.+|+|+ ++++|||++..+.+.++++|.+-|+.+.|+| .|.+|++++ .|+++++|...+..+
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~--- 422 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSP--- 422 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCccc---
Confidence 999999999999999999 8999999999999999999999999999999 677788877 799999999998763
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
+..+..+...+-++.++ +|++++++++.|.++++|.
T Consensus 423 --~ksLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 423 --LKSLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --chhhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence 45666666666677777 9999999999999999995
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=251.05 Aligned_cols=287 Identities=18% Similarity=0.245 Sum_probs=235.5
Q ss_pred CCcccceEEEEccC-CCEEEEEeCCCcEEEEECC-----CCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 3 ~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+.-|..+ +..+. .+.+.+++.|.++.+|++. .|..++.+++|...+.....+++
T Consensus 15 ~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d------------------ 74 (315)
T KOG0279|consen 15 TDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD------------------ 74 (315)
T ss_pred CceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC------------------
Confidence 4556445 55565 4688999999999999764 56778899999888887777776
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
+++.++++.|+.+++||+.+++...++ .+|...|.+++|++|++.+++|+.|.+|++||.. |.+..++.
T Consensus 75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 75 ---------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred ---------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 889999999999999999999877666 6899999999999999999999999999999975 66666666
Q ss_pred cC--CCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 157 AS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 157 ~~--~~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
.+ .+.|+|+.|+|+ ..+|++++ +++++||+++.+....+.+|.+.++.+.+||||...++++ .||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEcc
Confidence 55 679999999998 67888888 8999999999999999999999999999999999999987 89999999999
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccccc
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
.++ +.+.+++.. .+..++|+ |+...|+.+... .|+|||+++...+..+++..... ..
T Consensus 223 ~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~--------s~--- 279 (315)
T KOG0279|consen 223 EGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGP--------SS--- 279 (315)
T ss_pred CCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccCC-ceEEEeccchhhhhhcccccccc--------cc---
Confidence 987 446666555 45667777 887777776654 59999999888776554221110 00
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
....-...+++||+||..| ++|-.|+.+++|.+.
T Consensus 280 -----------------------------------~~~~~~clslaws~dG~tL-f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 280 -----------------------------------KAGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVA 313 (315)
T ss_pred -----------------------------------ccCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEee
Confidence 0111246889999999999 999999999999874
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-35 Score=265.24 Aligned_cols=280 Identities=15% Similarity=0.246 Sum_probs=247.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|.. +-|+|+-..+++++.|++|++||..+|++...+++|...+.++.|...
T Consensus 109 ~~vt~--v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~------------------------- 161 (406)
T KOG0295|consen 109 SSVTR--VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS------------------------- 161 (406)
T ss_pred cceee--eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-------------------------
Confidence 46633 489999999999999999999999999999999998888777777765
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+.++++++.|-.+++||..+.....+...+|.-.|.+++|-|.|.++++++.|.+|++|++.+|-++.+|.+|...|.
T Consensus 162 --Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 162 --GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred --ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 788999999999999999874322244468999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC---------------CCEEEEEecCCCeEEE
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYIAL 226 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~---------------~~~l~s~~~~d~~i~v 226 (579)
.++.+.||.++++++ .++++|-+.++++...+..|..+|.+++|.|. ++++++++ .|++|++
T Consensus 240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk~ 318 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIKI 318 (406)
T ss_pred EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEEE
Confidence 999999999999999 79999999999999999999999999999763 24777776 8999999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccc
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS 306 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (579)
||+.++. |++++..+...++.+.|+ |.|+||+++..|+++++||+++++.+....
T Consensus 319 wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------- 373 (406)
T KOG0295|consen 319 WDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------- 373 (406)
T ss_pred EeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeeeccC---------------
Confidence 9999986 779999999999999998 999999999999999999998887654332
Q ss_pred ccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.|...|.++.|..+..++ +|||-|.++++|+-
T Consensus 374 ----------------------------------------ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 ----------------------------------------AHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 405 (406)
T ss_pred ----------------------------------------CCcceeEEEecCCCCceE-Eeccccceeeeeec
Confidence 456678888888888888 99999999999963
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-33 Score=245.50 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=201.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.-|.++ ..++||++.++++.|+++++||+.+|+..+.|.+|...+.++.|+++
T Consensus 63 sH~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------------------------ 116 (315)
T KOG0279|consen 63 SHFVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------------------------ 116 (315)
T ss_pred ceEecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------------------------
Confidence 3446555 89999999999999999999999999999999999998888888887
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..|++|+.|.+|++||+..+.........|.+-|+|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+
T Consensus 117 ---n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~ 193 (315)
T KOG0279|consen 117 ---NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG 193 (315)
T ss_pred ---CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence 8889999999999999998776654443445889999999998 67899999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
.++.++++|||.++++|+ |.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.+......-
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEEL 270 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhc
Confidence 999999999999999999 899999999999987775 88999999999986555544 4677999999987643100
Q ss_pred eeee----ee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 239 CVLA----ME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 239 ~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
.... .. .....+. .+|+ +||..|++|-.||.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~cls-laws-----~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLS-LAWS-----ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEE-EEEc-----CCCcEEEeeecCCcEEEEEee
Confidence 0000 01 1223333 4454 899999999999999999753
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=269.08 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=231.6
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|..+ .|.|+|+.|++|+..|.+.+|+..+......++.|..+ ++++.|.+.
T Consensus 97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~------------------Vr~m~ws~~------- 149 (464)
T KOG0284|consen 97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP------------------VRTMKWSHN------- 149 (464)
T ss_pred cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc------------------ceeEEEccC-------
Confidence 467555 99999999999999999999997544443334445444 445555543
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+..+++|+.+|.|++|++..+... .+...|...|++++|+|+...|++|+.||+|+|||....+..+.+.+|...|.
T Consensus 150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 889999999999999999877664 23344558999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
|++|+|.-.++++++ +.|++||.+++.++.++.+|+..|..+.|+|++++|+++| .|..++++|+++.+.. +
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl-----~ 300 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKEL-----F 300 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHH-----H
Confidence 999999999999999 8999999999999999999999999999999999999998 8999999999965533 4
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
....+...+..+.|.+ -....+.+|+.||.|..|.+...+.+...
T Consensus 301 ~~r~Hkkdv~~~~WhP----~~~~lftsgg~Dgsvvh~~v~~~~p~~~i------------------------------- 345 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHP----LNESLFTSGGSDGSVVHWVVGLEEPLGEI------------------------------- 345 (464)
T ss_pred Hhhcchhhheeecccc----ccccceeeccCCCceEEEeccccccccCC-------------------------------
Confidence 4555555556666652 24578888999999999987622221111
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
-.+|...|++++|.|=|..| ++||.|+++++|..
T Consensus 346 -----------------------~~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 346 -----------------------PPAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR 379 (464)
T ss_pred -----------------------CcccccceeeeeccccceeE-eecCCCcceeeecc
Confidence 11688899999999999999 99999999999975
No 16
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=277.00 Aligned_cols=343 Identities=17% Similarity=0.211 Sum_probs=281.1
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+| .|++-+||.-+||.|..||.|+||+..++....+|.+|...++.+.|...
T Consensus 67 ev--t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~-------------------------- 118 (888)
T KOG0306|consen 67 EV--TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI-------------------------- 118 (888)
T ss_pred eE--EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence 55 44477788889999999999999999999999999999888887777766
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--------
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-------- 156 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-------- 156 (579)
+..+++|+.|+.|.+||+-......++ .||.+.|+..-|..+.+++++++.|+.|++||+.+..++.+.-
T Consensus 119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~ 196 (888)
T KOG0306|consen 119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA 196 (888)
T ss_pred -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence 889999999999999999988777777 7899999999999888899999999999999998765543321
Q ss_pred --------------------------------------------------------------------------------
Q 008041 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008041 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~ 356 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK 356 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence
Q ss_pred --------------cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe--------------------------
Q 008041 157 --------------ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-------------------------- 195 (579)
Q Consensus 157 --------------~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~-------------------------- 195 (579)
+|...|.+++++.+...+++|+ +.|++|+..+.++++++
T Consensus 357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCce
Confidence 4666788889998888888887 89999999887766532
Q ss_pred --------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc--ccceeeeeeecC-----ceeEEeEE
Q 008041 196 --------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK--QSASCVLAMEHP-----AVFMDCRC 254 (579)
Q Consensus 196 --------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~-----~~~~~~~~ 254 (579)
+.|.+.|.+++.+||++.++++| .|++|++||..-... .....+..+.|. ...+.|+.
T Consensus 437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred EEEEeehhhhhhhhhccccceeeeeecCCCCceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 35889999999999999999998 799999999743221 001111222221 23345677
Q ss_pred ecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEe
Q 008041 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY 334 (579)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (579)
++ |||++|+++-.|++++||-+++.+...++.+++..+.|++ .+++++ .|++|+.|..++. |
T Consensus 516 ~S-----pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD-IS~DSk----livTgSADKnVKi--------W 577 (888)
T KOG0306|consen 516 VS-----PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD-ISPDSK----LIVTGSADKNVKI--------W 577 (888)
T ss_pred Ec-----CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe-ccCCcC----eEEeccCCCceEE--------e
Confidence 77 9999999999999999999999999999999999999988 688888 9999999987766 7
Q ss_pred CCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccC
Q 008041 335 GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLP 397 (579)
Q Consensus 335 g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~ 397 (579)
|.....|.+.+-+|...|+++.|-|+..+. .|+|.|+.+|.|+..+- +..++....+-..+.
T Consensus 578 GLdFGDCHKS~fAHdDSvm~V~F~P~~~~F-Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 578 GLDFGDCHKSFFAHDDSVMSVQFLPKTHLF-FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred ccccchhhhhhhcccCceeEEEEcccceeE-EEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence 777888888899999999999999988888 99999999999987543 666765555444443
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=255.46 Aligned_cols=284 Identities=14% Similarity=0.210 Sum_probs=242.3
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
=||++ ++.|-.++|++|+.|++++|||+.+|++..++.+|-..+..+.+++.
T Consensus 153 WVr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-------------------------- 204 (460)
T KOG0285|consen 153 WVRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-------------------------- 204 (460)
T ss_pred eEEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc--------------------------
Confidence 36555 99999999999999999999999999999999999888887777765
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
..++++++.|+.|+.||+..++.+..+ .||-+.|.|++.+|.-..+++|+.|.++++||+++...+..+.+|..+|.+
T Consensus 205 -HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 205 -HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred -CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 788999999999999999999999776 689999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
+.+.|-...+++|+ ++|++||++.|+...++..|...|.+++.+|....|++++ .| .|+-|++..+... ..
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~n 355 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----QN 355 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----hc
Confidence 99999888999998 8999999999999999999999999999999988888876 44 5999999988643 34
Q ss_pred eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccce
Q 008041 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (579)
+..+..++..+... +..++++|+.+|.+.+||.+++-..+.... .+.-|+.+
T Consensus 356 lsgh~~iintl~~n------sD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------~vqpGSl~-- 407 (460)
T KOG0285|consen 356 LSGHNAIINTLSVN------SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------IVQPGSLE-- 407 (460)
T ss_pred cccccceeeeeeec------cCceEEEcCCceEEEEEecCcCcccccccc--------------------cccCCccc--
Confidence 55666777777764 456788999999999999988755432211 11112221
Q ss_pred ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+..|.+.+|...|..| ++|..|++|++|.-
T Consensus 408 -------------------------sEagI~as~fDktg~rl-it~eadKtIk~~ke 438 (460)
T KOG0285|consen 408 -------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKE 438 (460)
T ss_pred -------------------------cccceeEEeecccCceE-EeccCCcceEEEec
Confidence 12357777888889999 99999999999975
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8e-34 Score=281.60 Aligned_cols=238 Identities=14% Similarity=0.216 Sum_probs=207.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-------------------------------EEEeccCccccccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-------------------------------QTEFADIASTETTSLYGN 57 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 57 (579)
.|+.||+|+..||.|-.|..|++|.+...++ ..++.+|.++|....|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 6779999999999999999999999874321 112334444444444444
Q ss_pred cccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC
Q 008041 58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (579)
Q Consensus 58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 137 (579)
+ .++|++++.|++|++|.+.+..++..+ .||..||+++.|+|.|.||+|+|.
T Consensus 462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred c---------------------------ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence 3 789999999999999999999988666 699999999999999999999999
Q ss_pred CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 138 d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
|++-++|.....++.+.|.+|-+.|.|+.|+|++.++++|+ .++++||+.+|..++.|.||.++|.+++|+|+|++|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
+++ .|+.|++||+.++... ..+..+...+..+.|+ .+|..||+|+.|++|++||+....
T Consensus 594 Sg~-ed~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 594 SGD-EDGLIKIWDLANGSLV-----KQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecc-cCCcEEEEEcCCCcch-----hhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence 987 7999999999998744 2333446777888888 999999999999999999976543
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.3e-33 Score=245.54 Aligned_cols=283 Identities=14% Similarity=0.191 Sum_probs=232.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+.| .++.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+++..+.|..+
T Consensus 47 ~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----------------------- 101 (338)
T KOG0265|consen 47 KGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----------------------- 101 (338)
T ss_pred cceE--EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence 4677 666999999999999999999999954 34445667788887777766666
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
++.+++++.|.+|+.||+++|+.+.+. ++|.+-|+++.-+.-|.. +.+++.|+++++||+++...++++. .+.
T Consensus 102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence 888999999999999999999999777 689999999986555554 6788899999999999999888876 356
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
+++++.|..++..+.+|+ +.|++||++.+....++.||..+|+.+..+|+|.++.+-+ .|.++++||++.-... .+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence 899999999999999999 8999999999999999999999999999999999999987 7999999999875433 22
Q ss_pred eeeeee--cCceeEEe--EEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041 239 CVLAME--HPAVFMDC--RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 239 ~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
++..+. .+...... ..|+ |++..+.+|+.|..+++||..+...+.
T Consensus 254 ~v~if~g~~hnfeknlL~csws-----p~~~~i~ags~dr~vyvwd~~~r~~ly-------------------------- 302 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWS-----PNGTKITAGSADRFVYVWDTTSRRILY-------------------------- 302 (338)
T ss_pred eEEEeecchhhhhhhcceeecc-----CCCCccccccccceEEEeecccccEEE--------------------------
Confidence 333222 22222222 2333 999999999999999999864433221
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++.||...|.++.|.|...+| .+++.|+++++-++
T Consensus 303 -----------------------------klpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei 337 (338)
T KOG0265|consen 303 -----------------------------KLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI 337 (338)
T ss_pred -----------------------------EcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence 455888899999999999999 99999999887654
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-32 Score=267.17 Aligned_cols=322 Identities=16% Similarity=0.182 Sum_probs=265.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
.++.||.|.++|++|+.|-+++||++...+- ...+.+|...+....|..+ .
T Consensus 149 ~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---------------------------~ 201 (893)
T KOG0291|consen 149 TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---------------------------S 201 (893)
T ss_pred eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC---------------------------c
Confidence 5669999999999999999999999886654 5667777777776666655 5
Q ss_pred cEEEEEECCCeEEEEEccC-----------------------CeE-----E-----EEecCCCCCCEEEEEEccCCCEEE
Q 008041 87 SLLVLGTGGGDVLALAVSA-----------------------GQL-----K-----WRLSDCHPGGVSAISFATHGSCIY 133 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~-----------------------~~~-----~-----~~~~~~h~~~V~~l~~~~~~~~l~ 133 (579)
.-+++.+.||.+.+|.... ++. . ..++......|++.+||+..+.++
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 5689999999999998871 111 1 112233347899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecC
Q 008041 134 SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210 (579)
Q Consensus 134 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~ 210 (579)
+|-..|...+|++....+++.+.-...+|..++|+..|..+|.|+ |++.||+.++..-+.+.++|...+++++++||
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD 361 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence 999999999999999999999888888999999999999999998 79999999999889999999999999999999
Q ss_pred CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
|+++++|+ +||.|+|||..++- |..++..|...+..+.|. ..|+.+++.+.||+|+.||+...+..+++
T Consensus 362 gq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 362 GQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred CcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeecccceeeee
Confidence 99999998 79999999999876 778888888888889998 89999999999999999999998888876
Q ss_pred CCeeEE-eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008041 291 KATKIL-SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (579)
Q Consensus 291 ~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (579)
..+.+. .+|.. ..|.+. .+.+|+.|. ++..+| ........+.+.||+++|.+++|+|+|..| +|+|
T Consensus 431 t~P~p~Qfscva-vD~sGe----lV~AG~~d~----F~IfvW---S~qTGqllDiLsGHEgPVs~l~f~~~~~~L-aS~S 497 (893)
T KOG0291|consen 431 TSPEPIQFSCVA-VDPSGE----LVCAGAQDS----FEIFVW---SVQTGQLLDILSGHEGPVSGLSFSPDGSLL-ASGS 497 (893)
T ss_pred cCCCceeeeEEE-EcCCCC----EEEeeccce----EEEEEE---EeecCeeeehhcCCCCcceeeEEccccCeE-Eecc
Confidence 644433 22222 223333 666666653 232233 234566778899999999999999999999 9999
Q ss_pred ceecccceeeee
Q 008041 370 LLKSKRGRYVQN 381 (579)
Q Consensus 370 ~d~~~~~w~~~~ 381 (579)
.|+++|+|++-.
T Consensus 498 WDkTVRiW~if~ 509 (893)
T KOG0291|consen 498 WDKTVRIWDIFS 509 (893)
T ss_pred ccceEEEEEeec
Confidence 999999999853
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=240.87 Aligned_cols=232 Identities=17% Similarity=0.280 Sum_probs=205.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCC------eEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.|+|+|.|+++|+|+-|+...||++.+. +..+++.+|.+.+.+..|..
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d------------------------- 155 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD------------------------- 155 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-------------------------
Confidence 78999999999999999999999999855 34556666665555444433
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
...|++++.|.+.-+||+.+++.+..+ .+|.+.|.++.++| +++.|++|+-|+..++||++.+.++++|.+|+..
T Consensus 156 ---D~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 156 ---DNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred ---CCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence 456999999999999999999998766 79999999999999 9999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
|++++|.|+|.-+++|+ ++.++||++..+.+..+... ..+|++++|+..|++|+++. .|.++.+||.-.++.
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~--- 307 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGER--- 307 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccce---
Confidence 99999999999999999 89999999999998888632 36899999999999999886 799999999887763
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
+-.+..|+..++++..+ |||..+++|+.|.+++||.
T Consensus 308 --vg~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 --VGVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --EEEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence 35666888889999998 9999999999999999994
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=278.02 Aligned_cols=280 Identities=23% Similarity=0.332 Sum_probs=230.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..| .++.|||+|+++++++.|+.+++|+..+++ ...++.+|...+..+.|+++
T Consensus 160 ~sv--~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----------------------- 214 (456)
T KOG0266|consen 160 PSV--TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----------------------- 214 (456)
T ss_pred Cce--EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-----------------------
Confidence 456 556999999999999999999999998877 66666677766666666665
Q ss_pred cccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++++.|++|++||+.. +..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|..
T Consensus 215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD 289 (456)
T ss_pred ----CcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence 77899999999999999944 4566555 69999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
+|++++|+++|+++++++ +.|++||+.++. ++..+.++..+ ++++.|+|++.++++++ .|+.+++||+.....
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKS 368 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcc
Confidence 999999999999999998 999999999998 56778777665 99999999999999987 799999999998764
Q ss_pred ccceeeeeeecCce--eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041 235 QSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
. ..+ ..|... .+..... .+++.++++|+.|+.|++||..++..+..
T Consensus 369 ~---~~~-~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~~----------------------- 416 (456)
T KOG0266|consen 369 V---GTY-TGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQR----------------------- 416 (456)
T ss_pred e---eee-cccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhhh-----------------------
Confidence 3 111 123322 2222222 38999999999999999999877554322
Q ss_pred hhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecccc--ceecccceee
Q 008041 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (579)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (579)
+.+| ...+..++++|...++ ++++ .|+.+++|..
T Consensus 417 --------------------------------l~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 417 --------------------------------LEGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY 453 (456)
T ss_pred --------------------------------hcCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence 2345 5567788888888888 7776 6888888864
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.9e-32 Score=250.97 Aligned_cols=339 Identities=17% Similarity=0.204 Sum_probs=257.6
Q ss_pred CCCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| ++++|+|-.. .+|+|+.|-..++|++....-..+. ..+....+............+|++.|+..
T Consensus 177 ~~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~---- 246 (524)
T KOG0273|consen 177 HESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----QLVLRHCIREGGKSVPSNKDVTSLDWNND---- 246 (524)
T ss_pred CCCce--EEEecCchhhhhhhccCCccceeeeeehhhccccch----hhhhhhhhhhhcccCCccCCcceEEecCC----
Confidence 35778 8999999776 8999999999999998751111000 00000111101011233568999999875
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+++|++|+.+|.+++|+...+.. ..+..|.+||.++.|+..|.||++++.|+++.+||..+|...+.|.-|..
T Consensus 247 -----G~~LatG~~~G~~riw~~~G~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 247 -----GTLLATGSEDGEARIWNKDGNLI--STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred -----CCeEEEeecCcEEEEEecCchhh--hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 88999999999999999875544 33467999999999999999999999999999999999999999998888
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
+-..+.|-.+. -+++++ +.|+|+.+....++.++.+|.++|.++.|.|.|..|++++ .|+++++|+......
T Consensus 320 ~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~---- 393 (524)
T KOG0273|consen 320 PALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNS---- 393 (524)
T ss_pred CccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcc----
Confidence 87788998655 455555 8999999999999999999999999999999999999987 799999999776542
Q ss_pred eeeeeecCceeEEeEEecCCc-c--c-CCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041 239 CVLAMEHPAVFMDCRCIDNGG-V--D-DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
...+..+...+..+.|++.. . . -++..+++++.|++|++||+..+.++..+..+...+.+.. |+|+++ ++
T Consensus 394 -~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~----yl 467 (524)
T KOG0273|consen 394 -VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR----YL 467 (524)
T ss_pred -hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc----EE
Confidence 23344455445555555321 1 1 2356899999999999999999999988766666666655 789988 99
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++|++++.+.++. ...+..++...+.. .|..++|+.+|.+|.++. .|+.+.+-++
T Consensus 468 AsGs~dg~V~iws--------~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~-sd~~vcvldl 522 (524)
T KOG0273|consen 468 ASGSLDGCVHIWS--------TKTGKLVKSYQGTG-GIFELCWNAAGDKLGACA-SDGSVCVLDL 522 (524)
T ss_pred EecCCCCeeEecc--------ccchheeEeecCCC-eEEEEEEcCCCCEEEEEe-cCCCceEEEe
Confidence 9999988766533 34445555555444 589999999999994444 4888877654
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-32 Score=272.72 Aligned_cols=201 Identities=19% Similarity=0.329 Sum_probs=190.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++|| ..+.|+|+.++|++||.|+++|+|.+.+..+...+++|..++..+.|+|.
T Consensus 450 H~GPV--yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~----------------------- 504 (707)
T KOG0263|consen 450 HSGPV--YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR----------------------- 504 (707)
T ss_pred CCCce--eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------------------
Confidence 57999 66699999999999999999999999999999999999999999989876
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+-++++++.|++-++|........ +++.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.|.+|.++
T Consensus 505 ----GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 505 ----GYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred ----ceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 788999999999999999987776 445789999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
|.+++|+|+|++|++|+ |.|.+||+.+++.+..+.+|++.|.++.|+.+|..|+++| .|++|++||+....
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI 652 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence 99999999999999999 9999999999999999999999999999999999999998 79999999987654
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=230.18 Aligned_cols=251 Identities=18% Similarity=0.292 Sum_probs=208.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.|+.+ ..+||+++||+++. ..||+||+.++. .+.+|.+|...+..+.|..+
T Consensus 40 dsqVNrL--eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---------------------- 94 (311)
T KOG0315|consen 40 DSQVNRL--EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---------------------- 94 (311)
T ss_pred ccceeeE--EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence 4678777 99999999999985 579999999876 58889988888877777766
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-AST 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~ 159 (579)
+...++|+.||.++|||++.-.+...+ .|.++|+++..+|+...|++|..+|.|++||+.+..+...+- ...
T Consensus 95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 889999999999999999996665443 488999999999999999999999999999999887666543 344
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCC------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
..|.++.+.|||++++.+. |..++|++-+. +++.+++.|.+-+..+.+|||+++|++++ .|.+++||+.+.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCC
Confidence 5999999999999999998 99999998764 45677899999999999999999999998 699999999988
Q ss_pred CccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041 232 VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (579)
.-+ ....+..+ .....| .|+ .||.||++++.|+.+++|++..++.++...++...
T Consensus 247 ~~k----le~~l~gh~rWvWdc-~FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 247 FFK----LELVLTGHQRWVWDC-AFS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred cee----eEEEeecCCceEEee-eec-----cCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 721 12333344 444444 455 79999999999999999999999988776665443
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-32 Score=260.15 Aligned_cols=248 Identities=15% Similarity=0.253 Sum_probs=219.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..|+++ .|+|...+++++-..|.|.|||.++...+..|.-..-++....|-..
T Consensus 13 SdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR------------------------ 66 (794)
T KOG0276|consen 13 SDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR------------------------ 66 (794)
T ss_pred CCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec------------------------
Confidence 4557555 99999999999999999999999999999988766655555444333
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
.+.+++|+.|..|++|+..+++.+..+ .+|.+-|.+++.||...+++++|.|-+|++||.+.. .+.++|.+|...
T Consensus 67 ---knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 67 ---KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ---cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 678999999999999999999998776 789999999999999999999999999999998754 788999999999
Q ss_pred eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC--CEEEEEecCCCeEEEEEcCCCcccc
Q 008041 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 162 v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
|.+++|+| |.+.+++++ ++|++|.+.+..+..++.+|...|+++.|-+.| .||++++ +|.+|+|||.++..
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~--- 218 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS--- 218 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH---
Confidence 99999999 667899998 999999999999999999999999999998754 6999987 79999999999865
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
|+.++..+...++.++|. |.=..+++|++||+++||+..|.++...+.
T Consensus 219 --CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 219 --CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred --HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 778888888888999997 888999999999999999988887655443
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-30 Score=252.47 Aligned_cols=280 Identities=23% Similarity=0.310 Sum_probs=231.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++|++++.||.|++|+..+++....+..+...+. .+.|.+.
T Consensus 8 h~~~i--~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~----- 62 (289)
T cd00200 8 HTGGV--TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------------------DVAASAD----- 62 (289)
T ss_pred cCCCE--EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee------------------EEEECCC-----
Confidence 45788 5559999999999999999999999998887776665544333 3444432
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+..+++++.+|.|++||+.+++.+..+ ..|...|.++.|+|+++++++++.|+.|++||+.+++....+..|...
T Consensus 63 ----~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 63 ----GTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred ----CCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 567999999999999999987766555 578889999999999888888888999999999989999999989999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
+.+++|+|++.++++++ +.|++||+++++.+..+..|...+.++.|+|+++.+++++ .|+.|++||+...+..
T Consensus 138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~---- 212 (289)
T cd00200 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL---- 212 (289)
T ss_pred EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee----
Confidence 99999999999999886 8999999999999999999999999999999999898887 5999999999876533
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
.....+...+..+.++ |++.++++++.||.+++||..+++.+.
T Consensus 213 -~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~------------------------------- 255 (289)
T cd00200 213 -GTLRGHENGVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ------------------------------- 255 (289)
T ss_pred -cchhhcCCceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence 3332334456667776 888888888889999999986543221
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+..|...+.+++|+|+|.++ ++++.|+.+++|+
T Consensus 256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~ 289 (289)
T cd00200 256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289 (289)
T ss_pred ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence 112455678999999999999 9999999999995
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-30 Score=286.72 Aligned_cols=304 Identities=16% Similarity=0.177 Sum_probs=228.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++.| .+++|+|+|++||+|+.|+.|+|||..+..... .....++. . ..+ ...+.++.|.+..
T Consensus 483 ~~~V--~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~~~--~-----~~~--~~~v~~l~~~~~~----- 544 (793)
T PLN00181 483 SNLV--CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYPVV--E-----LAS--RSKLSGICWNSYI----- 544 (793)
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccceE--E-----ecc--cCceeeEEeccCC-----
Confidence 4567 556999999999999999999999975421000 00000000 0 001 2356678887764
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++++.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..
T Consensus 545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 567999999999999999999887665 68999999999997 7889999999999999999999988888754 67
Q ss_pred eeEEEEc-cCCCEEEEEC--CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-c
Q 008041 162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S 236 (579)
Q Consensus 162 v~~l~~~-p~g~~l~~~~--~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-~ 236 (579)
+.++.|+ ++|.++++|+ |.|++||+++++ .+..+.+|...|.++.|. ++.++++++ .|++|++||+...... .
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN 697 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence 8999995 5799999998 899999998865 567788999999999997 677888887 7999999999754211 1
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
...+..+..+...+.++.++ |++.+|++|+.||.|++|+......+.... +..... +
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~-- 754 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V-- 754 (793)
T ss_pred CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence 12345555666667778887 899999999999999999975543221110 000000 0
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+. ....|...|.+++|+|+|..+ ++|+.|+.+++|++
T Consensus 755 -----------------~~~-------~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~ 792 (793)
T PLN00181 755 -----------------SGL-------EVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM 792 (793)
T ss_pred -----------------ccc-------ccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence 000 112355679999999999999 99999999999986
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-31 Score=230.31 Aligned_cols=247 Identities=14% Similarity=0.125 Sum_probs=189.1
Q ss_pred ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008041 112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (579)
Q Consensus 112 ~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~ 187 (579)
+..+|...|.+++|+|.|++|+++|.|.++.||.-.. .+++.++.+|+..|.|++|+++|++||+++ .+|.+|.+.
T Consensus 56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 3367999999999999999999999999999998553 378889999999999999999999999999 799999987
Q ss_pred CC---eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC
Q 008041 188 DH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 188 ~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.+ +++..+++|...|..+.|+|....|++++ .|++|++|.-..+. ...++.++..+...+-++.|. +.|
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G 207 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIG 207 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCC
Confidence 54 56788899999999999999999999988 79999999877422 245778888777777788887 899
Q ss_pred cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE
Q 008041 265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK 344 (579)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 344 (579)
..|++++.|++++||-..+.-... +......+. +. + ..|++++.|+.++++... ....+.......+.
T Consensus 208 ~rl~s~sdD~tv~Iw~~~~~~~~~-~sr~~Y~v~----W~---~---~~IaS~ggD~~i~lf~~s-~~~d~p~~~l~~~~ 275 (312)
T KOG0645|consen 208 SRLVSCSDDGTVSIWRLYTDLSGM-HSRALYDVP----WD---N---GVIASGGGDDAIRLFKES-DSPDEPSWNLLAKK 275 (312)
T ss_pred ceEEEecCCcceEeeeeccCcchh-cccceEeee----ec---c---cceEeccCCCEEEEEEec-CCCCCchHHHHHhh
Confidence 999999999999999754321111 111111111 11 1 278888887765554322 00011111122234
Q ss_pred EecCCCCcEEEeecCC-cceeeccccceecccceee
Q 008041 345 ILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 345 ~~~h~~~v~~~~~s~d-g~~l~~s~s~d~~~~~w~~ 379 (579)
-..|...|.++.|.|. ...| +|||.||.+++|++
T Consensus 276 ~~aHe~dVNsV~w~p~~~~~L-~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKVSNRL-ASGGDDGIVNFWEL 310 (312)
T ss_pred hcccccccceEEEcCCCCCce-eecCCCceEEEEEe
Confidence 4569999999999996 4566 99999999999987
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.6e-31 Score=239.91 Aligned_cols=324 Identities=14% Similarity=0.112 Sum_probs=259.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.+| .+++.+|+.+++|||+.|..-.||+..+|....++.+|...+.+..|+.+
T Consensus 63 H~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd----------------------- 117 (399)
T KOG0296|consen 63 HTDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD----------------------- 117 (399)
T ss_pred cCCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-----------------------
Confidence 45678 77799999999999999999999999999999999999988888888777
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+|++|..+|.|+||...++...+.+. +....+.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.+|..+
T Consensus 118 ----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 118 ----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ----ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence 8999999999999999999999988875 34567888999999999999999999999999998888999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc-
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA- 237 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~- 237 (579)
+++=.|.|+|+.++++. |+|++||..+++++.++.+. .....++.++..+..++.+. .++.+++-+..+++....
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEec
Confidence 99999999999999998 99999999999998888633 34567788888887777766 688888887777653310
Q ss_pred -----eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee--cccCCeeEEeeeccCCccccccc
Q 008041 238 -----SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 238 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
.......+....+..+.++ ..=...|+|+.||+|-|||....+.. ..++....... |-+ .+
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~----w~~-t~-- 339 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK----WLN-TD-- 339 (399)
T ss_pred CCCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE----EcC-cc--
Confidence 0000112223333444444 44467888999999999998766433 22322222221 233 33
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++++++.+|.++.+| .....+.-.+.||...|.+++.+||++++ +|+|.|++.++.++
T Consensus 340 --~l~t~c~~g~v~~wD--------aRtG~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 340 --YLLTACANGKVRQWD--------ARTGQLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV 397 (399)
T ss_pred --hheeeccCceEEeee--------ccccceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence 899999999888755 45566667889999999999999999999 99999999998876
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-32 Score=248.41 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=222.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+..| +.+.||++|+|||+++.|.+..||++..-. ...++.+|..++.- +.|.|.
T Consensus 224 tdEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~y------------------i~wSPD--- 280 (519)
T KOG0293|consen 224 TDEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSY------------------IMWSPD--- 280 (519)
T ss_pred CCcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEE------------------EEECCC---
Confidence 4567 778999999999999999999999875433 35666666655554 444443
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
.+++++|+.+..+.+||+.+|++...+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++-.
T Consensus 281 ------dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr 353 (519)
T KOG0293|consen 281 ------DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVR 353 (519)
T ss_pred ------CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccc
Confidence 67899999999999999999999877766777899999999999999999999999999974 66666666544
Q ss_pred C-CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 160 K-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 160 ~-~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
. .|.+++.++||+++++.+ ..|++|+..+........ ...+|+++..|.|++++++.- .+..+++||+...+...
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVR 431 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHH
Confidence 3 699999999999988877 899999988765544333 457899999999999988865 79999999999665331
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
-+.-......+--.||.. .+..++++||+|+.|+||+..+++.+.
T Consensus 432 ---kY~Ghkq~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgkll~---------------------------- 476 (519)
T KOG0293|consen 432 ---KYFGHKQGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGKLLA---------------------------- 476 (519)
T ss_pred ---HhhcccccceEEEeccCC----CCcceEEecCCCceEEEEEccCCceeE----------------------------
Confidence 011111122222334431 466899999999999999987776542
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.||...|.+++|+|......+|+|+|+++|+|...
T Consensus 477 ---------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 477 ---------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ---------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 3457888999999999887655999999999999653
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=222.63 Aligned_cols=246 Identities=17% Similarity=0.331 Sum_probs=207.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++|+.+ .|+-||+|.++|+.|.+|++|+...|.++.++.+|...+.....+.+
T Consensus 16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------------- 70 (307)
T KOG0316|consen 16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------------- 70 (307)
T ss_pred cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence 35889555 99999999999999999999999999999999999988877666555
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~ 159 (579)
+..+++|+.|..|.+||+.+|+...++ .+|.+.|+.+.|+.+...+++|+-|.++++||.++. ++++.+....
T Consensus 71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 677999999999999999999999777 789999999999999999999999999999999865 6888888888
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
..|.++.++ +..+++|+ |+++.||++.|+.....-+ .||+++.|++|++..++++ -|+++++.|-.+++...
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~- 219 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLK- 219 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccceeeecccchhHHHH-
Confidence 899999986 56778887 9999999999987766554 4799999999999998887 69999999999987541
Q ss_pred eeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041 238 SCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 238 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
.+ ..|. +..+.|. +. ....++++|++||.+++||+....++..+.-
T Consensus 220 --sY-kGhkn~eykldc~-l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 220 --SY-KGHKNMEYKLDCC-LN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred --Hh-cccccceeeeeee-ec-----ccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 11 1222 2333333 33 5668899999999999999998887765543
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=2.6e-32 Score=245.27 Aligned_cols=277 Identities=16% Similarity=0.227 Sum_probs=226.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..| .|+.| |...+++|..|++|+|||..+-.+...+.+|.+.+.++.|.
T Consensus 197 skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd-------------------------- 246 (499)
T KOG0281|consen 197 SKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD-------------------------- 246 (499)
T ss_pred CCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--------------------------
Confidence 4556 55566 55689999999999999999999999999988887766664
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST 159 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~ 159 (579)
...|++|+.|.+|++||+++|+.+..+ -+|...|..+.|+ +.++++++.|.++.+||+.... +.+.+.+|.
T Consensus 247 ---~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred ---ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence 457899999999999999999998766 4799999999995 4589999999999999998654 334578899
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
..|+.+.|+ .+++++++ .+|++|++.+++.++++.+|...|.|+.+. ++++++|+ .|.+|++||+..+..
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~c--- 392 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC--- 392 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccHH---
Confidence 999999997 56999888 799999999999999999999999988874 77888877 699999999999874
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhc
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (579)
...++.++..+.++-| |.+.+++|..||+|++||+.++..-+.. .+.
T Consensus 393 --LRvLeGHEeLvRciRF-------d~krIVSGaYDGkikvWdl~aaldpra~---------------~~~--------- 439 (499)
T KOG0281|consen 393 --LRVLEGHEELVRCIRF-------DNKRIVSGAYDGKIKVWDLQAALDPRAP---------------AST--------- 439 (499)
T ss_pred --HHHHhchHHhhhheee-------cCceeeeccccceEEEEecccccCCccc---------------ccc---------
Confidence 4567788889999988 4588999999999999998776432111 000
Q ss_pred cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
-++..+..|.+.|..+.| |...+ +++++|.+|-+|+.-|
T Consensus 440 ----------------------~Cl~~lv~hsgRVFrLQF--D~fqI-vsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 440 ----------------------LCLRTLVEHSGRVFRLQF--DEFQI-ISSSHDDTILIWDFLN 478 (499)
T ss_pred ----------------------hHHHhhhhccceeEEEee--cceEE-EeccCCCeEEEEEcCC
Confidence 111133457778888777 55667 9999999999999854
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=8.8e-32 Score=239.74 Aligned_cols=284 Identities=20% Similarity=0.292 Sum_probs=224.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-|..|||||+||++|+.||-|.|||..+|+....++-..... | -....++.|+.|... ..+
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~----f------MMmd~aVlci~FSRD---------sEM 277 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN----F------MMMDDAVLCISFSRD---------SEM 277 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc----e------eecccceEEEeeccc---------HHH
Confidence 455999999999999999999999999998765443110000 0 000223444444332 778
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++|+.||.|++|.+.+|.++.++..+|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..|++|...|+...|+
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
+||..+++++ |+|++|+..+.+++.+|+ +...+|+++..-|.+ ..++.+. ..++|++.++...-..+ +..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVrs----fsS 432 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVRS----FSS 432 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEee----ecc
Confidence 9999999998 999999999999999885 345678888777754 4666665 68899999987653221 111
Q ss_pred e--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041 244 E--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 244 ~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
+ ..+..+. .+.+ |.|.++.+.++|+.++.|...+|+.-+
T Consensus 433 GkREgGdFi~-~~lS-----pkGewiYcigED~vlYCF~~~sG~LE~--------------------------------- 473 (508)
T KOG0275|consen 433 GKREGGDFIN-AILS-----PKGEWIYCIGEDGVLYCFSVLSGKLER--------------------------------- 473 (508)
T ss_pred CCccCCceEE-EEec-----CCCcEEEEEccCcEEEEEEeecCceee---------------------------------
Confidence 1 2233443 3344 999999999999999999876665421
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
++..|...++.++-.|..++| +|-|+|+.+++|.
T Consensus 474 ----------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 ----------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK 507 (508)
T ss_pred ----------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence 334566677888888888888 9999999999994
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.5e-29 Score=234.73 Aligned_cols=321 Identities=14% Similarity=0.138 Sum_probs=242.2
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec---cCccccccccccccccccccccccceEEeeecccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
=|+++ .|||||.+||+++.||++.+||-.+|+.+.++. .|.+.+. .+.|.|.
T Consensus 192 FV~~V--RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf------------------alsWsPD----- 246 (603)
T KOG0318|consen 192 FVNCV--RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF------------------ALSWSPD----- 246 (603)
T ss_pred ceeeE--EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE------------------EEEECCC-----
Confidence 36444 999999999999999999999999999999987 4544444 4555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++++.|.+++|||+.+++++.++..+.. +.-.++-|- +..|++.+.+|++..++....+....+.+|.
T Consensus 247 ----s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 247 ----STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred ----CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 67799999999999999999999887764443 444555664 6689999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-------------------------------E------------
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-------------------------------K------------ 194 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~-------------------------------~------------ 194 (579)
..|+++..+|++++|++|+ |.|.-|+..++..-+ .
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 9999999999999999999 999999986542110 0
Q ss_pred ------------------------------eecCC--------CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 195 ------------------------------FSGHP--------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 195 ------------------------------~~~h~--------~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+..+. ....+++++|++.+++.++ .|+.|++|.+......
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~- 478 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELK- 478 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCccc-
Confidence 00010 1235678899999999988 7999999999887643
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC-eeEEeeeccCCcccccccchhhh
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
.......+...++++.++ ||+.+|+++...+.+.+||..+.+.....-. +.-.+.+.. ++|+.+ .++
T Consensus 479 --ee~~~~~h~a~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~----~vA 546 (603)
T KOG0318|consen 479 --EEAKLLEHRAAITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNK----LVA 546 (603)
T ss_pred --ceeeeecccCCceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCce----EEE
Confidence 112233455567788888 9999999999999999999998876322111 233344444 788877 899
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+|+.|..+..|+- ............|...|..+.|-.+... +|.+.|..+|+|++
T Consensus 547 TGSlDt~Viiysv-------~kP~~~i~iknAH~~gVn~v~wlde~tv--vSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 547 TGSLDTNVIIYSV-------KKPAKHIIIKNAHLGGVNSVAWLDESTV--VSSGQDANIKVWNV 601 (603)
T ss_pred eccccceEEEEEc-------cChhhheEeccccccCceeEEEecCceE--EeccCcceeEEecc
Confidence 9999875544321 1111112233358888999999877665 56777999999987
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5e-31 Score=247.31 Aligned_cols=284 Identities=11% Similarity=0.127 Sum_probs=231.4
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+..|.++ .|.| .+.+|++|+.|+.|+||++.. +.++++|.+|..++..+.|+..
T Consensus 214 ~kgvsai--~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~---------------------- 269 (503)
T KOG0282|consen 214 TKGVSAI--QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC---------------------- 269 (503)
T ss_pred ccccchh--hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc----------------------
Confidence 3456444 8999 888999999999999999987 8999999999999999988887
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++++-|+.|++||+.+|+++.++.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-
T Consensus 270 -----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 270 -----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred -----CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 88899999999999999999999888743 3568999999998 779999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+.|..+.|-++|+.+++++ +++++|+.+.+..+.... .+.....++..+|++++++.-+ .|+.|.++.+...-...
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccC
Confidence 9999999999999999998 899999999876654432 2334566889999999999887 79999999976543332
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
....+.-..-...-.-+.|+ |||.+|++|+.||.+.+||.++.+.+.
T Consensus 422 kkK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~---------------------------- 468 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS---------------------------- 468 (503)
T ss_pred HhhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh----------------------------
Confidence 22223222122222334565 999999999999999999987765543
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
++..|...++.+.|.|--.--+++|+.||.|++|+
T Consensus 469 ---------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 ---------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 23356677888888887765449999999999995
No 37
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=238.96 Aligned_cols=434 Identities=15% Similarity=0.197 Sum_probs=288.4
Q ss_pred CcccceEEEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 4 SNIRDILTSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~-lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++|.++ +|||...| +|+.+ .-++.||+..+......+..-...+.+..|..+
T Consensus 27 ~~vssl--~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D------------------------ 79 (487)
T KOG0310|consen 27 NSVSSL--CFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD------------------------ 79 (487)
T ss_pred CcceeE--ecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecC------------------------
Confidence 567444 99996653 44444 357999999887776655544444444444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+++.|...|.|++||..+...+ +.+.+|+.+|....|+|+++. +++|++|+.+++||+.+......+.+|++.
T Consensus 80 ---G~LlaaGD~sG~V~vfD~k~r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 80 ---GRLLAAGDESGHVKVFDMKSRVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred ---CeEEEccCCcCcEEEeccccHHHH-HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 899999999999999996664444 445789999999999996654 788889999999999888765579999999
Q ss_pred eeEEEEccCCC-EEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 162 ISCMAVSSDGK-MLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
|.|.+|+|... ++++|+ |.|++||+++. ..+.++. |..+|..+.+-|.|..++++| ...|++||+.++.+.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql-- 230 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL-- 230 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee--
Confidence 99999999655 677777 99999999986 6677775 999999999999999999886 468999999976543
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhc
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (579)
+.....+...++|+.+. .++..|++++-||.+++||..+.+.+...
T Consensus 231 --l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~--------------------------- 276 (487)
T KOG0310|consen 231 --LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSW--------------------------- 276 (487)
T ss_pred --hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEee---------------------------
Confidence 22333456667788887 78899999999999999996555443211
Q ss_pred cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeeccCCccccccC
Q 008041 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLP 397 (579)
Q Consensus 318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 397 (579)
.-.++|.+++.|||++.+ +.|-.++.+-+-... ++.- .......+
T Consensus 277 -----------------------------~~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~--~k~k---~s~~~~~r 321 (487)
T KOG0310|consen 277 -----------------------------KYPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRRE--VKKK---PSKEPKRR 321 (487)
T ss_pred -----------------------------ecccceeeEEecCCCceE-EEecccceeeeehhh--cccC---CCcccccc
Confidence 113488999999999998 777778877555331 1110 00000000
Q ss_pred CccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcccccccCCcCCCHHH-HHHhcCCCCCCCCCCCCchhh
Q 008041 398 LPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMED-RLRSLGILSNKDDLLSNSALE 476 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~ 476 (579)
..+. .......++. ....+.+ +.-..+.+....+.-| .|... ..+
T Consensus 322 ~~r~-~~~~v~~r~~-------------------~~~~~~d-div~n~~~r~~L~~~Dk~Lk~F-------------~~k 367 (487)
T KOG0310|consen 322 ADRS-DGFFVKVRGQ-------------------NYKGQKD-DIVVNEVKRLKLTYFDKRLKQF-------------KHK 367 (487)
T ss_pred cccc-ccceEeeecc-------------------ccccccc-eeEeccccccCCchHHHHHhhh-------------hHH
Confidence 0000 0000000100 0000000 0000000000111111 11111 111
Q ss_pred hhhcccee----------ecccC-ChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCC
Q 008041 477 ATLFNGID----------FETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQ 545 (579)
Q Consensus 477 ~~l~~~l~----------l~~~~-~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~ 545 (579)
.+|...+. +++.+ -.-.+...+....-..+.+||.||.+ .-+.+.-...++.|+..+|-..+.-+-..
T Consensus 368 kALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~-~l~~~rf~~~L~~~~~~iLd~Y~~~i~~s 446 (487)
T KOG0310|consen 368 KALDHVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVK-NLTVVRFASILMEVVSVILDLYARDIEGS 446 (487)
T ss_pred HHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHhhhccC
Confidence 11211110 01111 12366677777888888999999995 44777778899999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhh--hhhhhhhceeeeEe
Q 008041 546 ESLTPMLSSLYKVRKKKL--FASAFTCFILLYLF 577 (579)
Q Consensus 546 ~~l~~~l~~l~~~~~~r~--~~~~~~~~~~~~~~ 577 (579)
|.+...+..|...+++-+ +..++...+-|.||
T Consensus 447 ~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL 480 (487)
T KOG0310|consen 447 PMLAKLIQALRGKVEQEVRVQKELLRLIGMLDML 480 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877 55555444444433
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=235.37 Aligned_cols=238 Identities=20% Similarity=0.333 Sum_probs=209.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+..|.++ +|+..|+++|+++.|-.+++||.++ .++.....+|...+.+..|-|.
T Consensus 150 t~sv~di--~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~----------------------- 204 (406)
T KOG0295|consen 150 TDSVFDI--SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL----------------------- 204 (406)
T ss_pred ccceeEE--EEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec-----------------------
Confidence 3457444 9999999999999998899999876 4555556666655555555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+|++++.|.+|+.|++.+|.++.++ .+|..-|.-+..+.||..+++|+.|.+|++|-+.++++...++.|+.+
T Consensus 205 ----gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 205 ----GDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ----CCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 788999999999999999999999777 789999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccC---------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 162 ISCMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 162 v~~l~~~p~---------------g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
|.|++|-|. +.++.+++ ++|++||+.++.++.++.+|.+.|..++|+|.|+||++++ +|+++
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktl 358 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTL 358 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcE
Confidence 999999873 24777887 8999999999999999999999999999999999999998 79999
Q ss_pred EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
++||+...+ |+.++..+..++.+..|. .+..++++|+.|.++++|..
T Consensus 359 rvwdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 359 RVWDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence 999999987 667778888889999997 66679999999999999964
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.7e-29 Score=236.03 Aligned_cols=247 Identities=13% Similarity=0.277 Sum_probs=212.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..|+++ +|+.+|.+||+|+.||.++||+. +|.+..++..|.+++..+-|+..
T Consensus 236 kdVT~L--~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~------------------------- 287 (524)
T KOG0273|consen 236 KDVTSL--DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK------------------------- 287 (524)
T ss_pred CCcceE--EecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC-------------------------
Confidence 457444 99999999999999999999996 57777777666665554444433
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+++|++++.||++.+||..+++....+ .-|..+-.++.|-.+ ..|++++.|+.|+++-+....++.+|.+|.+.|.
T Consensus 288 --G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 288 --GTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred --CCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 899999999999999999999988666 568888788888654 4689999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---------CEEEEEecCCCeEEEEEcCCC
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~---------~~l~s~~~~d~~i~vwd~~~~ 232 (579)
++.|+|.|.+|++++ ++++||+.........+.+|...|..+.|+|+| ..+++++ .|++|++||+..+
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~g 442 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESG 442 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCC
Confidence 999999999999999 999999999888999999999999999999974 3577777 6999999999998
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
. ++..+..+...+..+.|+ |+|+++++|+.||.|++|+.++++.++.....
T Consensus 443 v-----~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 443 V-----PIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred c-----eeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 7 446675666667778887 99999999999999999999999988766544
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=224.41 Aligned_cols=279 Identities=14% Similarity=0.137 Sum_probs=233.9
Q ss_pred CCCcccceEEEEcc---CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 2 GSSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 2 ~~~~V~~l~~~fsp---dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
++.|| +.++||| +|-+|++++.||.-.+-+-++|.-+-+|.+|.+.+.+.....+
T Consensus 13 htrpv--vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n-------------------- 70 (334)
T KOG0278|consen 13 HTRPV--VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN-------------------- 70 (334)
T ss_pred CCcce--eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch--------------------
Confidence 46788 6679986 8889999999999999999999999999999988876666554
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeec
Q 008041 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA 157 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~ 157 (579)
....++++.|-+-++||.-+|..+..+ .|.--|.+++|+.|.++|++|+.+..+++||++..+ +...+.+
T Consensus 71 -------a~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 71 -------ATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred -------hhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 445688889999999999999988666 477789999999999999999999999999997654 5567899
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|.+.|..+.|....+.++++. ++|++||.++++.+.++. ...+|+++.++++|+++.++ ..+.|..||..+-...
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL 218 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce
Confidence 999999999999888888866 999999999999999887 67889999999999987665 4688999999886643
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
.....+. .+...... |+...+++|++|+.++.||..+++.+..+
T Consensus 219 -----Ks~k~P~-nV~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~~------------------------- 262 (334)
T KOG0278|consen 219 -----KSYKMPC-NVESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGSY------------------------- 262 (334)
T ss_pred -----eeccCcc-cccccccc-----CCCceEEecCcceEEEEEeccCCceeeec-------------------------
Confidence 2222222 23334444 89999999999999999999998765321
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.++|.++|.|+.|||||..- +|||+|+++++|...
T Consensus 263 -----------------------------nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 263 -----------------------------NKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT 297 (334)
T ss_pred -----------------------------ccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence 13788999999999999999 999999999999763
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=238.25 Aligned_cols=239 Identities=15% Similarity=0.179 Sum_probs=199.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++||.+ .||++|.++++|+.+|.|++|+..-. .+..++.|. ..+.+++|++.
T Consensus 137 HDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpn---------------------- 191 (464)
T KOG0284|consen 137 HDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPN---------------------- 191 (464)
T ss_pred hcccceeE--EEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCC----------------------
Confidence 57899666 99999999999999999999997533 333344332 45555555544
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
...+++++.||.|+|||....+....+ .+|.-.|.++.|+|....++++|.|..|++||.++|+++.++.+|+.
T Consensus 192 -----DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn 265 (464)
T KOG0284|consen 192 -----DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN 265 (464)
T ss_pred -----CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence 566999999999999999987765444 79999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
.|..+.|+|++++|++++ ..+++||+++.+.+.++.+|...|+++.|+|-..-|++.+..||.|..|.+...+..
T Consensus 266 tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~--- 342 (464)
T KOG0284|consen 266 TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL--- 342 (464)
T ss_pred eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---
Confidence 999999999999999999 799999999999999999999999999999977655555558999999999854432
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
.... ..+...+..+.+. |-|..|++|+.|.++++|.
T Consensus 343 ~~i~-~AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 343 GEIP-PAHDGEIWSLAYH-----PLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cCCC-cccccceeeeecc-----ccceeEeecCCCcceeeec
Confidence 1112 2444555566666 9999999999999999995
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.5e-29 Score=251.03 Aligned_cols=258 Identities=16% Similarity=0.202 Sum_probs=223.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++.|+.+ +|+|...++.++--.|.|++||.+=+.++..|..|.+++..+.|++.
T Consensus 9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------ 62 (1202)
T KOG0292|consen 9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------ 62 (1202)
T ss_pred cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence 4567677 99999999999999999999999999999999999999999999987
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
..++++|+.|..|++|+..+.+++.++ .||-+-|..+.|++.-.+++|+|.|.+|+||+..+++++..+++|...|
T Consensus 63 ---qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ---CCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 788999999999999999999999877 5899999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCe-----------------------------eeEEeecCCCCEEEEEEecCC
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------------------------KMQKFSGHPGAVRFMTFSDNG 211 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~s~~~ 211 (579)
.|..|+|....+++++ .+|+|||+..-+ ....+.||...|+.++|+|.-
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 9999999999999999 899999984210 123457999999999999999
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+++|+ +|+.|++|.+...+.- .+-+...+-..++++.|. |....|++.++|+.|+|||+...+.+..++
T Consensus 219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence 9999987 7999999998876532 222333444555666676 888999999999999999999888777765
Q ss_pred CeeEEeee
Q 008041 292 ATKILSSS 299 (579)
Q Consensus 292 ~~~~~~~~ 299 (579)
....+...
T Consensus 290 rendRFW~ 297 (1202)
T KOG0292|consen 290 RENDRFWI 297 (1202)
T ss_pred ccCCeEEE
Confidence 54444443
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-27 Score=211.83 Aligned_cols=250 Identities=16% Similarity=0.191 Sum_probs=199.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+.| .++.|+++|.+|++++.|.+++|||..+|+++.++..+...+....|..+
T Consensus 14 ~~~i--~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------ 67 (311)
T KOG1446|consen 14 NGKI--NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------ 67 (311)
T ss_pred CCce--eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC------------------------
Confidence 3567 45599999999999999999999999999999988766655555555443
Q ss_pred ccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 83 KLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
...++.++. |.+|+..++.+++.+ +++.||...|++++.+|-+..|++++.|++|++||++..++...+.....
T Consensus 68 ---~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 68 ---SNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred ---CceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 344555555 677999999999998 55689999999999999999999999999999999998887777664444
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
+ .++|+|+|-++|++. +.|++||++.- .+..+|. +.....+.+.|+|||++++.+. ..+.+++.|.-.+.
T Consensus 144 p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 144 P--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT 220 (311)
T ss_pred c--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc
Confidence 4 489999999999998 48999999964 3444443 3356789999999999999887 68999999998887
Q ss_pred cccceeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 234 KQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
.. ..+.... .....-..+|. ||++++++|+.||+|++|+++++..+....+.
T Consensus 221 ~~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 221 VK---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred Ee---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 44 2222222 22222455666 99999999999999999999999988766654
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-28 Score=247.57 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=190.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE---------------------------ec--------cC
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---------------------------FA--------DI 46 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~---------------------------~~--------~~ 46 (579)
+.++| +++.||+||+|||+||.||.|+||.+........ .. +.
T Consensus 266 h~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 266 HKGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cCCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 46789 9999999999999999999999999876211000 00 00
Q ss_pred c-----cccccccccccc---cccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC
Q 008041 47 A-----STETTSLYGNRL---EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118 (579)
Q Consensus 47 ~-----~~~~~~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~ 118 (579)
. .+.....|++.. ..||. .++-.+.|.. +++|++++.|.+|++|++...+++..+ .|.+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hnd 410 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHND 410 (712)
T ss_pred CCccccCCCccccccccchhhhhccc-hhheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCC
Confidence 0 000111122111 12443 3555677765 789999999999999999999999777 5999
Q ss_pred CEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008041 119 GVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 119 ~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~ 195 (579)
-|+|++|+| |.+||++|+.||.|++|++...+.+.-.. -..-|++++|.|||+..++|+ |.+++|+....+....+
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 999999999 88899999999999999997666554443 457899999999999999999 99999999887766544
Q ss_pred ec--C------CCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcE
Q 008041 196 SG--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY 266 (579)
Q Consensus 196 ~~--h------~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (579)
.- | ...|+.+.|.|... .+++++ .|..|+|||.+..... +.+.-.+.......+.|+ .||++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~ 560 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKH 560 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCE
Confidence 21 1 12799999987544 344444 6999999999776543 223323333333445565 89999
Q ss_pred EEEEEcCCeEEEEEcCCce
Q 008041 267 VLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 267 l~~~~~dg~i~iwd~~~~~ 285 (579)
|+++++|..|++|+.+...
T Consensus 561 IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 561 IVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEEeecCceEEEEeCCCCc
Confidence 9999999999999975543
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=239.66 Aligned_cols=270 Identities=17% Similarity=0.259 Sum_probs=222.8
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 13 fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
+.|+.++||.+++.+.+|+|+..+..+. .+.+|...+.++. .|.. +.+|++|
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~-----------------~~~~----------g~llat~ 383 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD-----------------VWSS----------GDLLATG 383 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee-----------------eccc----------CcEEEEe
Confidence 4567799999999999999999888876 5666665544332 2222 6789999
Q ss_pred ECCCeEEEEEccCCeEE---EEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-----e----eeEeecCC
Q 008041 93 TGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-----L----LGKFRAST 159 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~---~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~-----~----~~~~~~~~ 159 (579)
+.|.++++|.+..+... .....+|+..|.+++++..+ .+|+++|.|+++++|++...+ . ..+...|.
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 99999999988544331 12236899999999998755 458999999999999987521 1 11345799
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
..|+|++++|+.+++++|+ .+.++|+++..+...++.||...|.++.|+|..+.+++++ .|++|+||.+.+..
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fS---- 538 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFS---- 538 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccce----
Confidence 9999999999999999999 8999999999999999999999999999999999999987 79999999999865
Q ss_pred eeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 238 SCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
|+.++. |...+..+.+. .+|..|++++.||-|++|++++.+.+.+
T Consensus 539 -ClkT~eGH~~aVlra~F~------~~~~qliS~~adGliKlWnikt~eC~~t--------------------------- 584 (775)
T KOG0319|consen 539 -CLKTFEGHTSAVLRASFI------RNGKQLISAGADGLIKLWNIKTNECEMT--------------------------- 584 (775)
T ss_pred -eeeeecCccceeEeeeee------eCCcEEEeccCCCcEEEEeccchhhhhh---------------------------
Confidence 677887 55666666666 5899999999999999999887765432
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
+..|.+.|+.++.+|++.++ +||+.|+.+-+|.
T Consensus 585 ----------------------------lD~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 585 ----------------------------LDAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK 617 (775)
T ss_pred ----------------------------hhhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence 33788899999999999998 9999999999995
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=6.3e-30 Score=229.97 Aligned_cols=238 Identities=14% Similarity=0.251 Sum_probs=196.3
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++.| +|+.| |.+.+++|+.|.+|+|||+++|+++.++-+|...+.-+.|+
T Consensus 236 HtGSV--LCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~------------------------- 286 (499)
T KOG0281|consen 236 HTGSV--LCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS------------------------- 286 (499)
T ss_pred CCCcE--Eeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-------------------------
Confidence 46778 87777 56799999999999999999999999888777766655554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
++++++++.|..|.+||+..... ..+.+.||...|+.+.| +.+++++++.|.+|++|++.+++.++++.+|.
T Consensus 287 ----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 287 ----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred ----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhccc
Confidence 66799999999999999986543 33456799999999999 56799999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS- 236 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~- 236 (579)
.+|.|+.+. |+++++|+ ++|++||+..|++++.++||+.-|.++.|. .+.+++|+ .||+|++||+..+....
T Consensus 361 RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 361 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCcc
Confidence 999998875 88999998 899999999999999999999999999995 56789988 79999999998875431
Q ss_pred ---ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
..|+..+..+..-+--+.| |...+++++.|.+|.|||..++-.
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQF-------D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccchHHHhhhhccceeEEEee-------cceEEEeccCCCeEEEEEcCCCCc
Confidence 1233333333322223444 557899999999999999877643
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.4e-28 Score=210.99 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=215.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.+|++++.|....+|-...|+.+.++ .+|++.|+|+....+.+++++|+.|.++++||+.+|+++.+++ ...+|..+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~ 99 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV 99 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence 999999999999999999999998777 7999999999999999999999999999999999999999988 45689999
Q ss_pred EEccCCCEEEEEC-------CeEEEEECC-------CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 166 ~~~p~g~~l~~~~-------~~i~vwd~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
.|+++|++++... +.|.++|++ +.+++..+..+.+.++.+.|.|-+++|+++. .||.|.+||.++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~ 178 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART 178 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence 9999999988765 589999998 4456888888999999999999999999986 899999999999
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccc
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
++.. +.....+...+..+.++ +|..++++++.|.+.++||..+.+.+++.....+..+. . ++|....
T Consensus 179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a-a-isP~~d~-- 245 (327)
T KOG0643|consen 179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA-A-ISPLLDH-- 245 (327)
T ss_pred Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeecccccce-e-cccccce--
Confidence 8643 23333444466666776 99999999999999999999999888776544333222 2 2333321
Q ss_pred hhhhhccccce-ecCCceEEE--E--EeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 312 AAIFAAKLQDI-VKPASVHTF--V--AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 312 ~~i~~~~~~~~-~~~~~~~~~--~--~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.|+.|..+-. +..-....- . .+.......+..+++|.+++.+++|+|||+.- +||++|+.+|+--.
T Consensus 246 -VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 246 -VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHF 316 (327)
T ss_pred -EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEe
Confidence 4444443321 000000000 0 00011124456788999999999999999999 99999999998765
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.4e-28 Score=245.33 Aligned_cols=237 Identities=24% Similarity=0.389 Sum_probs=202.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..|+++ +|+|||+++++|+.|++|+|||+ ..+..+.++.+|...+.++.|++.
T Consensus 204 ~~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------------------------ 257 (456)
T KOG0266|consen 204 RGVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------------------------ 257 (456)
T ss_pred cceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------------------------
Confidence 456445 99999999999999999999999 666899999999888888888776
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~ 160 (579)
++++++|+.|++|++||+.+++++..+ .+|.++|++++|+++++++++++.|+.|++||+.++. +...+..+..
T Consensus 258 ---g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 258 ---GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred ---CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence 788999999999999999999998666 7899999999999999999999999999999999998 5677776665
Q ss_pred C--eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE---EEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 161 G--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR---FMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~--v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~---~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
. ++++.|+|++++++++. +.+++||+..++.+..+.+|...+. +..+++.++++++++ .|+.|.+|++.+..
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGG 412 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccc
Confidence 5 99999999999999998 6999999999999999999987543 334567899999987 89999999999865
Q ss_pred cccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEc
Q 008041 234 KQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYG 281 (579)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~ 281 (579)
.. ..+..+ ...+....++ |...++++++ .|+.+++|..
T Consensus 413 ~~-----~~l~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 413 IL-----QRLEGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred hh-----hhhcCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecC
Confidence 33 233333 4444555555 8889999998 6899999964
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-28 Score=208.44 Aligned_cols=245 Identities=17% Similarity=0.195 Sum_probs=201.3
Q ss_pred EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008041 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (579)
Q Consensus 111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~ 188 (579)
.++..|.++|.++.|+-+|+|.++|+.|.+|++|+...|.+++++.+|...|..++.+.|+..+++++ ..+.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 34477999999999999999999999999999999999999999999999999999999999999988 6999999999
Q ss_pred CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
|+.++.|.+|.+.|+.++|+.+...+++++ -|..+++||.++.... ++..+......+..+.. .+..|+
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-fD~s~r~wDCRS~s~e---PiQildea~D~V~Si~v-------~~heIv 159 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-FDSSVRLWDCRSRSFE---PIQILDEAKDGVSSIDV-------AEHEIV 159 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEecc-ccceeEEEEcccCCCC---ccchhhhhcCceeEEEe-------cccEEE
Confidence 999999999999999999999998888887 6999999999988644 45555544444444444 468899
Q ss_pred EEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC
Q 008041 269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN 348 (579)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h 348 (579)
+|+.||+++.||++.|+.....-+..+...+ |+++++ ..++++.++++++.| ......++.+++|
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs---~s~d~n----c~La~~l~stlrLlD--------k~tGklL~sYkGh 224 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVS---FSKDGN----CSLASSLDSTLRLLD--------KETGKLLKSYKGH 224 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcCCcceeEE---ecCCCC----EEEEeeccceeeecc--------cchhHHHHHhccc
Confidence 9999999999999999876544333333222 677877 778888877766644 3344555567788
Q ss_pred CCC--cEEEeecCCcceeeccccceecccceeeeec
Q 008041 349 SGE--DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 349 ~~~--v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
.+. ...++++..-.++ ++||+|+.+++|++.+.
T Consensus 225 kn~eykldc~l~qsdthV-~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHV-FSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ccceeeeeeeecccceeE-EeccCCceEEEEEeccc
Confidence 765 4556677777888 99999999999999654
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=220.15 Aligned_cols=225 Identities=18% Similarity=0.254 Sum_probs=196.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+..+++|+.|++|+|||+.+|++...+ .||-..|..+++++...|+++++.|+.|++||++..+.++.+.+|-..|.|+
T Consensus 163 n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 788999999999999999999998666 7899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
+.+|.-..|++|+ .++++||+++...+..+.||..+|.++.+.|....+++++ .|++|++||++.++. ..++
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt-----~~tl 315 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKT-----MITL 315 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCce-----eEee
Confidence 9999999999999 7999999999999999999999999999999888899987 799999999999873 3567
Q ss_pred ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccccee
Q 008041 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (579)
.++...+.+++.. |....+++++.| .|+-|++..+..+.+
T Consensus 316 t~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~n---------------------------------- 355 (460)
T KOG0285|consen 316 THHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQN---------------------------------- 355 (460)
T ss_pred ecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhhc----------------------------------
Confidence 7888888888887 888888888876 578888766654432
Q ss_pred cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+.+|..-+.+++...||.+ ++|++.+++.+|+-.
T Consensus 356 ---------------------lsgh~~iintl~~nsD~v~--~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 356 ---------------------LSGHNAIINTLSVNSDGVL--VSGGDNGSIMFWDWK 389 (460)
T ss_pred ---------------------cccccceeeeeeeccCceE--EEcCCceEEEEEecC
Confidence 2355656677777777765 478888888888874
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=9.3e-28 Score=217.85 Aligned_cols=272 Identities=14% Similarity=0.198 Sum_probs=214.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .++.||.||.|||||+.+|.|+||+..+|.....+.. .+..+.|....|.
T Consensus 107 DSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---------------------e~~dieWl~WHp~---- 159 (399)
T KOG0296|consen 107 DSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---------------------EVEDIEWLKWHPR---- 159 (399)
T ss_pred Cce--EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---------------------ccCceEEEEeccc----
Confidence 456 7779999999999999999999999999998877631 2223444444433
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-Ce
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GI 162 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v 162 (579)
...++.|+.||.+.+|.+..+... +++.||+.++++-.|.|+|+.++++..||+|++||+.+++++.++....+ ..
T Consensus 160 --a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 160 --AHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred --ccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence 788999999999999999987444 55589999999999999999999999999999999999999988875433 67
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEecCC---CEEEEEecCCCeEEEEEc
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRT 229 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~ 229 (579)
.++.++..+..++.|. +.+++-+..+|+.+.... .+...+.++.+.|.. +..++++ -||+|.|||+
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~ 315 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDL 315 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEec
Confidence 8899999999988888 788888888888776655 455556666665543 4455554 7999999999
Q ss_pred CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccc
Q 008041 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (579)
...+.+ ....|...++.+.+. + ..+|++++.+|.|+.||.++|+.+....++...+-... .+++.+
T Consensus 316 a~~~~R-----~~c~he~~V~~l~w~------~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~- 381 (399)
T KOG0296|consen 316 AASTLR-----HICEHEDGVTKLKWL------N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKR- 381 (399)
T ss_pred ccchhh-----eeccCCCceEEEEEc------C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCc-
Confidence 987755 345566666666654 4 68999999999999999999999988887776665544 455555
Q ss_pred cchhhhhcccccee
Q 008041 310 ATAAIFAAKLQDIV 323 (579)
Q Consensus 310 ~~~~i~~~~~~~~~ 323 (579)
.+++++.|+..
T Consensus 382 ---~vvT~s~D~~a 392 (399)
T KOG0296|consen 382 ---LVVTVSDDNTA 392 (399)
T ss_pred ---EEEEecCCCeE
Confidence 78888876543
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=218.45 Aligned_cols=303 Identities=17% Similarity=0.170 Sum_probs=212.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+|+|+- +|||||.++|+|+.|..|+|.|+...--.....
T Consensus 111 HK~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks~~~------------------------------------- 151 (430)
T KOG0640|consen 111 HKSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKSKPK------------------------------------- 151 (430)
T ss_pred cccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhcchh-------------------------------------
Confidence 35677666 999999999999999999999986321100000
Q ss_pred cccCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--C
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--S 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~ 158 (579)
-+..+. .+.+ -++ +.+..|.++|+++.|+|....|++++.|++|++||+..-...+.|+. .
T Consensus 152 ------em~~~~---------~qa~hPvI-RTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd 215 (430)
T KOG0640|consen 152 ------EMISGD---------TQARHPVI-RTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD 215 (430)
T ss_pred ------hhccCC---------cccCCceE-eehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence 000000 0111 223 34457999999999999999999999999999999875443333332 3
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
..+|.++.|+|.|.++++|. ..+++||+.+.++...- .+|.+.|+++.+++.++..++++ .||.|++||--+++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~r 294 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNR 294 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHH
Confidence 45899999999999999998 79999999998886543 47899999999999999888887 89999999977766
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe----eEEeeeccCCcccccc
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT----KILSSSEDVNSKSQKS 309 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 309 (579)
.. ..+.-.|....+....|. .+|+++++.+.|..+++|.+.+++.+....+. +.......+|.....
T Consensus 295 Cv---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd- 365 (430)
T KOG0640|consen 295 CV---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED- 365 (430)
T ss_pred HH---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc-
Confidence 33 123334777778888887 89999999999999999999999887654432 111111111111111
Q ss_pred cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+++.-... .+.+..++.........--.+|.+.+..+.-||.+.-+ ++||.|...|+|.-
T Consensus 366 ---yVl~pDEa------s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 366 ---YVLFPDEA------SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR 425 (430)
T ss_pred ---eEEccccc------cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence 21111110 11222222221112222335799999999999999999 99999999999965
No 53
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=5.1e-26 Score=226.74 Aligned_cols=311 Identities=14% Similarity=0.183 Sum_probs=245.1
Q ss_pred EccCC--CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 13 FSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 13 fspdg--~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++|+. +.++.|+.+|.+.+|++++++.+.+|+++...++++.-+|. -..++
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVVa 218 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVVA 218 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEEE
Confidence 67765 56788999999999999999999999987777766655554 56799
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee------------
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR------------ 156 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~------------ 156 (579)
+|..+|+|.++|++.++.+..+. | .++|++++|..||+. +++|+..|.+.+||++..+.+...+
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 99999999999999999998884 4 489999999999987 5666677999999997543221111
Q ss_pred --------------------------------------------------------------------------------
Q 008041 157 -------------------------------------------------------------------------------- 156 (579)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (579)
T Consensus 297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence
Q ss_pred ---------------------------------------------------------------cCC------CCeeEEEE
Q 008041 157 ---------------------------------------------------------------AST------KGISCMAV 167 (579)
Q Consensus 157 ---------------------------------------------------------------~~~------~~v~~l~~ 167 (579)
.+. ..+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 111 35778888
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
++.|++.+.|. |.|-+|++++|-....| +.|..+|+.++...-++.+++++ .+|.++.||....... ....
T Consensus 457 s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l~ 532 (910)
T KOG1539|consen 457 SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSLR 532 (910)
T ss_pred eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eeec
Confidence 99999988887 99999999999888888 58999999999999899999998 6999999999887533 1122
Q ss_pred eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccce
Q 008041 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (579)
+.+. . .+.... .....++.+..|=.|.++|..+.+..+.+.++...+.... ||++++ .+++++.|+.
T Consensus 533 l~~~--~-~~iv~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~t 599 (910)
T KOG1539|consen 533 LGSS--I-TGIVYH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDST 599 (910)
T ss_pred cCCC--c-ceeeee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCCc
Confidence 2222 2 222222 4557788888999999999999999999988888877776 899999 8999999998
Q ss_pred ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce-ecccceee
Q 008041 323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRYV 379 (579)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d-~~~~~w~~ 379 (579)
++.|| .....+...+ .-..++.++.|||+|.+| ++...| .-+++|.-
T Consensus 600 Ir~wD--------lpt~~lID~~-~vd~~~~sls~SPngD~L-AT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 600 IRTWD--------LPTGTLIDGL-LVDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEe--------ccCcceeeeE-ecCCcceeeEECCCCCEE-EEEEecCceEEEEEc
Confidence 88866 2222222222 344589999999999999 888777 66899953
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.5e-27 Score=224.98 Aligned_cols=237 Identities=14% Similarity=0.166 Sum_probs=197.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..-|||+- .|=+--+++++|+.|..|+||+..+++.+..|..|...+.++..+|.
T Consensus 54 ~~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt----------------------- 108 (794)
T KOG0276|consen 54 SEVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT----------------------- 108 (794)
T ss_pred cccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC-----------------------
Confidence 34678665 88888899999999999999999999999999999887777766665
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
..++++++.|-.|++||...+=...+.+.||+--|.+++|+| |.+.|++++.|++|++|.+.+..+..++++|..
T Consensus 109 ----~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek 184 (794)
T KOG0276|consen 109 ----LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK 184 (794)
T ss_pred ----CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence 567899999999999999987655566789999999999999 567799999999999999999999999999999
Q ss_pred CeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 161 GISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 161 ~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+|+|+++-|.| .++++|+ .+|+|||.++..|+.++.||...|+.+.|+|.=..+++|+ +||++++|+..+-+..
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE- 262 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE- 262 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh-
Confidence 99999999855 6899988 7999999999999999999999999999999999999987 8999999998876543
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (579)
.++...-..+-++... +.+..++.|...|.|.+
T Consensus 263 ----~tLn~gleRvW~I~~~-----k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 ----KTLNYGLERVWCIAAH-----KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ----hhhhcCCceEEEEeec-----CCCCeEEEeccCCcEEE
Confidence 1222222223333333 45566666666665543
No 55
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.2e-27 Score=202.83 Aligned_cols=248 Identities=15% Similarity=0.257 Sum_probs=202.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++|.++ +|+.+|..||+|+.|++++||++...+...... .+||. ..+..++|.+..
T Consensus 19 ~~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---------------~~gh~-~svdql~w~~~~---- 76 (313)
T KOG1407|consen 19 HVQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---------------YRGHT-DSVDQLCWDPKH---- 76 (313)
T ss_pred hhhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhc---------------ccCCC-cchhhheeCCCC----
Confidence 34677555 999999999999999999999998775543332 12332 233345666655
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++++.|.+|++||++.++++.++. ..+.=.-+.|+|+|.+++.++.|..|...|.++.+.....+ ....
T Consensus 77 ----~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e 149 (313)
T KOG1407|consen 77 ----PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFE 149 (313)
T ss_pred ----CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccce
Confidence 6789999999999999999999987763 33444567899999999999999999999999888776655 3446
Q ss_pred eeEEEEccCCCEEEE-EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 162 ISCMAVSSDGKMLAT-AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~-~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
+..++|+-++.+++. .+ |.|.|.....-+++.+++.|.....||.|+|+|+||++|+ .|-.+.+||++..- |
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi-----C 223 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI-----C 223 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh-----h
Confidence 778888877666554 44 9999999999999999999999999999999999999998 69999999998754 5
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
...+...+..++.+.|+ .||++||++++|..|-|=+.++|..+..
T Consensus 224 ~R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred heeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEEE
Confidence 56777788889999998 9999999999999999988888876643
No 56
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.1e-26 Score=232.08 Aligned_cols=255 Identities=15% Similarity=0.156 Sum_probs=195.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.+++|+..+++++.+.....|+...+..+..+....... -.+++..+| ...+.++.|.|.+ +.+|++
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~----~~~~~l~GH-~~~V~~v~fsP~d--------~~~LaS 93 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA----SNPPILLGQ-EGPIIDVAFNPFD--------PQKLFT 93 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC----CCCceEeCC-CCCEEEEEEcCCC--------CCEEEE
Confidence 677887778888888888899987665443322111100 011223355 3467888898754 668999
Q ss_pred EECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 92 GTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
|+.||.|++||+.++. .+. .+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+.+|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~-~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIV-HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceE-EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 9999999999998653 232 347899999999999975 6899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccc
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~---~d~~i~vwd~~~~~~~~~ 237 (579)
+++|+|+|++|++++ +.|++||+++++.+.++.+|.+. +..+.|.+++..+++++. .|+.|++||++......
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~- 251 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY- 251 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-
Confidence 999999999999998 89999999999999999999865 456788998888887652 47899999998764320
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeec
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR 288 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 288 (579)
..... +....+....|+ +++.+|++++ .||.|++||+.+++.+.
T Consensus 252 -~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 252 -STVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred -eEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 11111 223334455666 8999998887 49999999998877554
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.2e-28 Score=240.29 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=201.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
...|+++-.+|.|.+||.+.+.++.++ .+|.++|.+++|+|++..|+||+.|-.|++|+..+.+++.++.+|-+.|..+
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence 667999999999999999999999777 6799999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc------
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------ 237 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~------ 237 (579)
.|++.-.++++++ .+|+||+..+++++..+.||...|.|..|+|....+++++ -|.+|+|||+..-++...
T Consensus 100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e 178 (1202)
T KOG0292|consen 100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS-LDQTVRVWDISGLRKKNKAPGSLE 178 (1202)
T ss_pred eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec-ccceEEEEeecchhccCCCCCCch
Confidence 9999999999999 8999999999999999999999999999999988999987 699999999865432210
Q ss_pred ------------------eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041 238 ------------------SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 238 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
..-+.++.+..-+..++|. |.-..|++|+.|..|++|.....+.
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmnetKa------------- 240 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMNETKA------------- 240 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEeccccc-------------
Confidence 1112344555556666665 7778888888888899886432111
Q ss_pred ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|. ..++.+|.+.|.++-|.|...++ +|.|+|+++++|++
T Consensus 241 -------------------------------WE---------vDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm 279 (1202)
T KOG0292|consen 241 -------------------------------WE---------VDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDM 279 (1202)
T ss_pred -------------------------------ee---------ehhhhcccCCcceEEecCcccee-EecCCCccEEEEec
Confidence 00 12566899999999999999999 99999999999999
Q ss_pred eec
Q 008041 380 QNR 382 (579)
Q Consensus 380 ~~~ 382 (579)
..+
T Consensus 280 ~kR 282 (1202)
T KOG0292|consen 280 TKR 282 (1202)
T ss_pred ccc
Confidence 754
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=4.9e-26 Score=220.28 Aligned_cols=233 Identities=21% Similarity=0.299 Sum_probs=196.2
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+.|+|+++++++++.||.|++||..+++....+..+... +.++.|.+. +.+
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~---------~~~ 107 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------------------VSSVAFSPD---------GRI 107 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc------------------EEEEEEcCC---------CCE
Confidence 36699999999999999999999999988777777654433 345555442 466
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++++.+|.|.+||+.+++....+ ..|...|.++.|+|++.++++++.|+.|++||+.+++.+..+..|...+.++.|+
T Consensus 108 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 108 LSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 777777999999999988877666 4788999999999998888888889999999999999999999898899999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+++.+++++ +.|++||+++++.+..+..|...+.++.|+|++.++++++ .|+.|++|++...+.. ..+..+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~ 260 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGH 260 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEcccc
Confidence 9998888877 8999999999999988888999999999999987777765 6999999999876533 333344
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
...+..+.|+ |++.+|++++.||.+++|+
T Consensus 261 ~~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWS-----PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence 5566777777 8999999999999999996
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=4.9e-28 Score=227.29 Aligned_cols=241 Identities=21% Similarity=0.270 Sum_probs=194.0
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd 145 (579)
.++++.|+|.. +.++++++.|+.|+||++.. +.++.+ +.+|..+|.+++|+++|..|++++.|+.+++||
T Consensus 216 gvsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 216 GVSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRT-FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccchhhhccce--------eeEEEecCCCceEEEEEEecCcceehh-hhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 45566666644 77899999999999999988 666644 479999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041 146 PLTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~ 222 (579)
+++|+++..|.. ...++|+.|+|++ +.+++|+ +.|+.||+++++.+.++..|-+.|..+.|-++|+++++++ +|+
T Consensus 287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk 364 (503)
T KOG0282|consen 287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK 364 (503)
T ss_pred cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc
Confidence 999999999874 4578999999999 7777777 8999999999999999999999999999999999999987 799
Q ss_pred eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
+++||+.+..-... +..........++... |++.++++-+.|+.|.+|.....-.+.
T Consensus 365 s~riWe~~~~v~ik----~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~n-------------- 421 (503)
T KOG0282|consen 365 SVRIWENRIPVPIK----NIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLN-------------- 421 (503)
T ss_pred cEEEEEcCCCccch----hhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccC--------------
Confidence 99999998875431 1112222223344444 999999999999999999743221110
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC--CCcEEEeecCCcceeeccccceecccceeee
Q 008041 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS--GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+ +.+.+|. +.-..+.|||||.+| +||+.||.+.+|+-.
T Consensus 422 ----kk----------------------------------K~feGh~vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 422 ----KK----------------------------------KRFEGHSVAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK 462 (503)
T ss_pred ----Hh----------------------------------hhhcceeccCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence 00 0122332 235788999999999 999999999999874
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=203.06 Aligned_cols=238 Identities=14% Similarity=0.206 Sum_probs=203.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| +-+.|++|++.+++++.|.+|+.||+++|++...+++|..-++.+. +.
T Consensus 89 HsgAV--M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~----------------------- 141 (338)
T KOG0265|consen 89 HSGAV--MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS----------------------- 141 (338)
T ss_pred cccee--EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence 46889 4459999999999999999999999999999999998876555433 11
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.+..++.+++.||++++||+++.+.+..+ ....+++++.|..++..+.+|+-|+.|++||++.+....++.+|.+.
T Consensus 142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred -ccCCeEEEecCCCceEEEEeecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 113678899999999999999998887555 24568999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCC----CeeeEEeecCCC----CEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSD----HKKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~----~~~~~~~~~h~~----~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
|+.+..+|+|.++.+-+ .++++||++. .+++..+.+|.. .....+|+|+++++-+++ .|+.+++||...
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS 297 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence 99999999999999988 8999999985 345778877653 345679999999887776 699999999887
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
.. .++.++.+...+.++.|. |....|.+++.|.+|++=.
T Consensus 298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEeec
Confidence 55 568888888888899887 9999999999999998743
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=4.4e-26 Score=207.93 Aligned_cols=271 Identities=14% Similarity=0.176 Sum_probs=211.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
++++++|++||.++|||. .|++...+.+|.+++. .+.|...++. ...+++++.|.
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik------------------~v~~v~~n~~------~~~fvsas~Dq 169 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIK------------------SVAWVIKNSS------SCLFVSASMDQ 169 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCccee------------------eeEEEecCCc------cceEEEecCCc
Confidence 689999999999999997 5888888887765544 4455544433 45799999999
Q ss_pred eEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-------------------------C
Q 008041 97 DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------------------------T 148 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-------------------------~ 148 (579)
++++|....++..... ..||...|-++...++|..+++|+.|.++.+|+.. +
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 9999999887653222 25899999999999999999999999999999932 1
Q ss_pred CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
+.++.++.+|..+|.++.|++ ...+.+++ .+|+.||+.+++.+.++.+ ....+++..+|..+.|++++ .|+.+++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl 326 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL 326 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence 235667889999999999998 56777887 8999999999999888874 56789999999999888887 6999999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce-eecccCCeeEEeeeccCCcc
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (579)
||++++... ...+++..|...+..+.+++ .+..+|++++.||++++||+++.+ .+..+..+...+.+.+
T Consensus 327 ~DPR~~~gs--~v~~s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd---- 396 (423)
T KOG0313|consen 327 WDPRTGDGS--VVSQSLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD---- 396 (423)
T ss_pred cCCCCCCCc--eeEEeeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe----
Confidence 999998533 23445555666777777772 244678999999999999999887 7777766666655444
Q ss_pred cccccchhhhhccccceecCCc
Q 008041 306 SQKSATAAIFAAKLQDIVKPAS 327 (579)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~ 327 (579)
..... .|++|+.|+.++++.
T Consensus 397 -W~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 397 -WNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred -ccCCc-eEEeccCcceEEEec
Confidence 22222 788888887666543
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-26 Score=224.32 Aligned_cols=271 Identities=16% Similarity=0.232 Sum_probs=218.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.|+ ..+.||.|. ...|.+|+..++......... ...++++.|.+. +.+|++
T Consensus 184 dWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~Lav 234 (484)
T KOG0305|consen 184 DWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLAV 234 (484)
T ss_pred hcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEEE
Confidence 677 455777776 447999999999866544321 345667777765 889999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEEccC
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSD 170 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~ 170 (579)
|..+|.|.|||..+.+.+..+...|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 99999999999999888866644499999999996 66799999999999999998766555 8899999999999999
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEe-cCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++++|+|+ +.+.|||....+++.++..|.+.|..++|+|-. ..|++|| ..|+.|++||..++... .... .
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vd-t 386 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVD-T 386 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----cccc-c
Confidence 99999999 899999998888999999999999999999954 4566643 47899999999988643 3333 3
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceec
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (579)
...+..+.|+ +..+-|+++. .++.|.||+..+.+.+
T Consensus 387 gsQVcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~~------------------------------------- 424 (484)
T KOG0305|consen 387 GSQVCSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKLV------------------------------------- 424 (484)
T ss_pred CCceeeEEEc-----CCCCEEEEecCCCCCcEEEEecccccee-------------------------------------
Confidence 3445566666 6766666653 3779999987663321
Q ss_pred CCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+.+|...|..+++||||..+ ++|+.|.++++|++-
T Consensus 425 ------------------~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 425 ------------------AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLF 461 (484)
T ss_pred ------------------eeecCCcceeEEEEECCCCCEE-EEecccCcEEecccc
Confidence 1456899999999999999999 999999999999985
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5e-26 Score=210.84 Aligned_cols=275 Identities=19% Similarity=0.260 Sum_probs=222.1
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
...|....+++|+.|..+.++|..+++.+..|+||.-.+....|++. ...+++
T Consensus 226 d~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~v~~ 278 (506)
T KOG0289|consen 226 DIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDTVIT 278 (506)
T ss_pred eecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhheee
Confidence 45555578999999999999999999999999999887777777766 667899
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--CCCeeEEEEcc
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMAVSS 169 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~l~~~p 169 (579)
++.|-.|+||........ .....|..+|+.+..+|.|.||++++.|++..+.|+++|.++...... .-.+++.+|+|
T Consensus 279 aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred cCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 999999999999877755 334679999999999999999999999999999999999988776542 23699999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc
Q 008041 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
||.+|.+|. +.+++||+.++..+..|++|.++|..++|+.+|-||++++ +|+.|++||++..+.. ..+.+...
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~~~- 432 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLDEK- 432 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeecccc-
Confidence 999999998 9999999999999999999999999999999999999988 7999999999987643 22333222
Q ss_pred eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCc
Q 008041 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (579)
..+..+.|+ +.|.+|+.++.|=+|++++-.+. .+.
T Consensus 433 ~~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k---------------------~W~------------------- 467 (506)
T KOG0289|consen 433 KEVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK---------------------SWT------------------- 467 (506)
T ss_pred ccceeEEEc-----CCCCeEEeecceeEEEEEecccc---------------------cce-------------------
Confidence 245667777 89999999987766666642111 000
Q ss_pred eEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
....+..|.+....+.|..+.+++ +++|.|...++..
T Consensus 468 -------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 -------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA 504 (506)
T ss_pred -------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence 011222455567778888888899 9999998876653
No 64
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=226.14 Aligned_cols=238 Identities=13% Similarity=0.175 Sum_probs=177.8
Q ss_pred ccCCCEEEE------EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 14 SPALDYFAI------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 14 spdg~~las------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
..++.++|. |+.++.|++|+......+..+.+|...+. ++.|.|.+ +.
T Consensus 35 a~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~------------------~lafsP~~--------~~ 88 (568)
T PTZ00420 35 ACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSIL------------------DLQFNPCF--------SE 88 (568)
T ss_pred eeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEE------------------EEEEcCCC--------CC
Confidence 334555554 45678899998877777777776655554 55555432 57
Q ss_pred EEEEEECCCeEEEEEccCCeE-E------EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 88 LLVLGTGGGDVLALAVSAGQL-K------WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~-~------~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+|++|+.||.|++||+.++.. . ...+.+|...|.+++|+|++.. +++++.|++|++||+++++....+. +.
T Consensus 89 lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~ 167 (568)
T PTZ00420 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MP 167 (568)
T ss_pred EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cC
Confidence 899999999999999986421 1 1234689999999999999876 5789999999999999998877776 56
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEE-----EEecCCCEEEEEecCC---CeEEEEEc
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRT 229 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l-----~~s~~~~~l~s~~~~d---~~i~vwd~ 229 (579)
..|.+++|+|+|++|++++ +.|++||+++++.+.++.+|.+.+... .|++++.+++++|..+ +.|++||+
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 7899999999999999887 899999999999999999998875443 3458889999987432 47999999
Q ss_pred CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
+..... .....+......+...+.. ++|.++++|+.|+.|++|++..+.
T Consensus 248 r~~~~p--l~~~~ld~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 248 KNTTSA--LVTMSIDNASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCCc--eEEEEecCCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCCc
Confidence 964322 1222333333333223333 678999999999999999987663
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.2e-26 Score=230.90 Aligned_cols=236 Identities=18% Similarity=0.307 Sum_probs=202.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
++..|. +.++++++.|++|++||..++..+.. +.+|.+.+..+.|... +.
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~ 262 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD 262 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence 444565 56899999999999999999998888 9999888877666543 67
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
.+++|+.|.++++||..+|++...+ .+|.+.|.++... +..+++|+.|.+|++|++.++..+.++.+|.++|.++..
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 8999999999999999999999776 6899999999874 457888999999999999999999999999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
+ +.++++|+ +.|++||+.+++++.++.+|...|.++.+.+. ..+++++ .|++|++||+++.. .|+.++.+
T Consensus 340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~ 411 (537)
T KOG0274|consen 340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG 411 (537)
T ss_pred c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence 8 77888888 99999999999999999999999999988765 7888887 79999999999983 25567777
Q ss_pred CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
+...+.... ..+++|++++.||+|++||..+++.++...
T Consensus 412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred Ccccccccc-------cccceeEeccccccEEEeecccCceeeeec
Confidence 766654333 467999999999999999998887766543
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=194.55 Aligned_cols=240 Identities=14% Similarity=0.193 Sum_probs=192.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
++..||++ +|+|.|+|||+||.|.++.||.-..+ +++..+.+|...+.+++|+..
T Consensus 60 hkrsVRsv--Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s--------------------- 116 (312)
T KOG0645|consen 60 HKRSVRSV--AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS--------------------- 116 (312)
T ss_pred chheeeee--eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---------------------
Confidence 34678777 99999999999999999999976543 678888888887777777666
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeE
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGK 154 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~~~~~~~ 154 (579)
+++|++++.|..|.||.+..+.. ....+++|+..|..+.|+|....|+++|.|.+|++|+-. ...+.++
T Consensus 117 ------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 117 ------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred ------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 89999999999999999986543 234558899999999999999999999999999999865 3468999
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
+.+|.+.|.+++|+|.|..|++++ ++++||-..+.- -.-|..++..+.|. ++ .|++++ .|+.|++|.-...
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~g-gD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG-VIASGG-GDDAIRLFKESDS 263 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc-ceEecc-CCCEEEEEEecCC
Confidence 999999999999999999999998 899999865321 12477889999998 44 688887 7999999986643
Q ss_pred ccc-cceeee-eeecCceeEEeEEecCCcccCC-CcEEEEEEcCCeEEEEEcC
Q 008041 233 KKQ-SASCVL-AMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 233 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 282 (579)
-.. ....+. ....+...+.++.+. |. +.+|++++.||.|++|.+.
T Consensus 264 ~d~p~~~l~~~~~~aHe~dVNsV~w~-----p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 264 PDEPSWNLLAKKEGAHEVDVNSVQWN-----PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCchHHHHHhhhcccccccceEEEc-----CCCCCceeecCCCceEEEEEec
Confidence 111 111111 223445577888887 74 6889999999999999864
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-26 Score=196.96 Aligned_cols=282 Identities=14% Similarity=0.163 Sum_probs=214.4
Q ss_pred eEEEEccC-CCEEEEEe-------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 9 ILTSFSPA-LDYFAICS-------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 9 l~~~fspd-g~~lasg~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++.|||= .++||.+. ..|++.|.+...++-+.++..-. .....-.++|.+..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d----------------~~D~LfdV~Wse~~--- 72 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD----------------TEDGLFDVAWSENH--- 72 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee----------------cccceeEeeecCCC---
Confidence 45699992 23444332 36899999986555444443111 01233356676654
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
.+.+++++.||.+++||...........++|...|.++.|++ +++.++++|.|++|++|+...++.+++|++|.
T Consensus 73 -----e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 73 -----ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN 147 (311)
T ss_pred -----cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence 678999999999999997665544455688999999999998 45568888999999999999999999999999
Q ss_pred CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 160 ~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
..|....|+| .++++++++ +.+++||++.......+..|...|.++.|+.-...++..|+.|+.|+.||++.-+.
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-- 225 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-- 225 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--
Confidence 9999999999 567888877 89999999975444458999999999999976655554455899999999998763
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCC-CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
.++.+..+...++-+.|+ |. ...|++++.|=+++|||.......
T Consensus 226 --pl~eL~gh~~AVRkvk~S-----ph~~~lLaSasYDmT~riw~~~~~ds~---------------------------- 270 (311)
T KOG0277|consen 226 --PLFELNGHGLAVRKVKFS-----PHHASLLASASYDMTVRIWDPERQDSA---------------------------- 270 (311)
T ss_pred --cceeecCCceEEEEEecC-----cchhhHhhhccccceEEecccccchhh----------------------------
Confidence 356777888888888888 54 457889999999999986432211
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceeccccee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~ 378 (579)
.+++.-|+..+..+.||+ ++.++ ++++.|.++++|+
T Consensus 271 --------------------------~e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 271 --------------------------IETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN 307 (311)
T ss_pred --------------------------hhhhhccceEEeccccccccCcee-eecccccceeeec
Confidence 112335777788888886 55567 9999999999996
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=4.2e-25 Score=242.94 Aligned_cols=241 Identities=18% Similarity=0.251 Sum_probs=194.4
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++| .+++|+| ++.+||+++.||+|+|||+.+++.+..+.+|...+.++.|+ +.+
T Consensus 533 ~~v--~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~------------------p~~----- 587 (793)
T PLN00181 533 SKL--SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS------------------SAD----- 587 (793)
T ss_pred Cce--eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEc------------------CCC-----
Confidence 345 3458887 47899999999999999999999988888776655554444 322
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~ 160 (579)
+.+|++|+.||.|++||+.++..+..+. +...|.++.|+ ++|.++++|+.||.|++||+++++ ....+.+|..
T Consensus 588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 6789999999999999999998876663 33689999995 578999999999999999998765 5677889999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.|.++.|. ++..+++++ ++|++||++. .+.+.++.+|...+..+.|+|++.+|++++ .|+.|++|+....
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~ 740 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence 99999997 677888887 8999999974 356788999999999999999999999988 7999999998655
Q ss_pred ccccc------ee--eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 233 KKQSA------SC--VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 233 ~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
..... .. -....++...+..++|+ |++..|++++.||.|++|++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence 32200 00 00112344567888887 99999999999999999985
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=214.63 Aligned_cols=231 Identities=14% Similarity=0.177 Sum_probs=194.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++.|-.||++||+|+..|.|+|||..+...+..+..|..++....|++. ++..
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--------------------------d~t~ 125 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--------------------------DNTM 125 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc--------------------------CCeE
Confidence 44589999999999999999999997776667778888888877777665 2778
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (579)
+++|+.|+.+++||+.+.... ..+.+|++.|.|.+|+|... .++|||.||.|++||++.. ..+..+. |..+|..+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl 203 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL 203 (487)
T ss_pred EEecCCCceEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence 899999999999999999874 34478999999999999554 6899999999999999877 5555665 888999999
Q ss_pred EccCCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 167 VSSDGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 167 ~~p~g~~l~~~~-~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+-|.|..+++++ +.+++||+.+| +.+..+..|...|+|+.+..++..|+++| -|+.+++||+.+-+ .+....
T Consensus 204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~ 277 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWK 277 (487)
T ss_pred EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeee
Confidence 999999999999 79999999965 44555555999999999999999999998 69999999977655 456666
Q ss_pred cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (579)
.++.++++..+ |+++.++.|..||.+.+-
T Consensus 278 ~~~pvLsiavs------~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 YPGPVLSIAVS------PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cccceeeEEec------CCCceEEEecccceeeee
Confidence 77777665544 899999999999988765
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=214.59 Aligned_cols=277 Identities=17% Similarity=0.158 Sum_probs=218.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.|.++ .|-++...|++|+.|..|++|++..++ ...++.+..+.+....|.++
T Consensus 175 ~gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~---------------------- 230 (459)
T KOG0288|consen 175 EGEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD---------------------- 230 (459)
T ss_pred cccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC----------------------
Confidence 4567556 999998999999999999999998776 45555555555555555444
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..++.++.|+.+++|++...+...++ .+|++.|+++.|......+++|+.|.+|+.||+....+.+++-. ..
T Consensus 231 -----~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S 303 (459)
T KOG0288|consen 231 -----NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GS 303 (459)
T ss_pred -----CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cc
Confidence 778999999999999999999887665 68999999999988776799999999999999999888877542 34
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
.+..|..+ +..+++|. +.|+.||.++..+....+.+. .|+++..++++..+++++ .|.++.+.|+++....
T Consensus 304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~--- 376 (459)
T KOG0288|consen 304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR--- 376 (459)
T ss_pred cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE---
Confidence 55666665 45666776 899999999999999888765 999999999999999987 7999999999987643
Q ss_pred eeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 239 CVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
..+.-. .....++-+.|+ |++.|+++|+.||.|+||+..+++.-.....
T Consensus 377 ~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~------------------------ 427 (459)
T KOG0288|consen 377 QTFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLSL------------------------ 427 (459)
T ss_pred EEeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEecc------------------------
Confidence 111111 011124445566 9999999999999999999988876432210
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCC-CcEEEeecCCcceeeccccceecccce
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
.+.. .|++++|+|-|..+ ++++.++.+.+|
T Consensus 428 ------------------------------s~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ------------------------------STSNAAITSLSWNPSGSGL-LSADKQKAVTLW 458 (459)
T ss_pred ------------------------------CCCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence 0111 68999999999999 999999999998
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-25 Score=219.06 Aligned_cols=240 Identities=19% Similarity=0.254 Sum_probs=201.5
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .++.|+++|.+||.|..+|.|.|||..+.+.+..+.+ +....+.|++|.
T Consensus 218 ~~v--tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~--------- 269 (484)
T KOG0305|consen 218 ELV--TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN--------- 269 (484)
T ss_pred Cce--EEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence 346 4459999999999999999999999998888877764 224467788886
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
...+.+|+.+|.|..+|++..+.......+|...|..+.|++|+.++++|+.|+.+.|||.....+...+..|...|.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 456899999999999999988766555688999999999999999999999999999999988889999999999999
Q ss_pred EEEEcc-CCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE-EecCCCeEEEEEcCCCccccc
Q 008041 164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p-~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~~d~~i~vwd~~~~~~~~~ 237 (579)
+++|+| ...+||+|+ +.|++||+.+++.+.... ..+.|.+|.|++..+.|++ .|..++.|.||+..+.+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-- 424 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-- 424 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence 999999 566888887 699999999999988775 4578999999998865555 4555678999999886533
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
..+..|...+-.+.++ |||..+++|+.|.++++|++-+.
T Consensus 425 ---~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 ---AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence 3444455556666676 99999999999999999997654
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.5e-26 Score=195.77 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=189.5
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg-~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++||++. +.+++++.||++++||... ...++.++.|..++. .+.|.+.. ..
T Consensus 65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~------------------Svdwn~~~--------r~ 118 (311)
T KOG0277|consen 65 DVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY------------------SVDWNTVR--------RR 118 (311)
T ss_pred EeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE------------------Eecccccc--------ce
Confidence 34899865 5778888899999999642 335666776665554 34444433 56
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
.+++++-||+|++|+...++.+.++ .+|...|....|+| ..+.|+++|.|+++++||++.......+..|...+.|+.
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD 197 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence 7888899999999999999988776 78999999999999 667899999999999999986555555999999999999
Q ss_pred Ecc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041 167 VSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 167 ~~p-~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
|+. +.+++++|+ +.|+.||+++- .++..+.+|.-.|+.++|||...-++++++.|-++++||...+.. ++.+
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds----~~e~ 273 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS----AIET 273 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh----hhhh
Confidence 997 556777777 89999999975 458888999999999999997654444444899999999986542 3455
Q ss_pred eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
..++...+..+.|+. -++.++|+++.|+.++||+.
T Consensus 274 ~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccceEEecccccc----ccCceeeecccccceeeecc
Confidence 668888888887872 36789999999999999983
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=207.10 Aligned_cols=238 Identities=17% Similarity=0.208 Sum_probs=199.1
Q ss_pred CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec-cCccccccccccccccccccccccceEEeeecccc
Q 008041 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 1 ~~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
|...+| +|++||.|...||+|+.||.|+||.+.+|.|++.|. .|...+.++.|+.+
T Consensus 261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--------------------- 317 (508)
T KOG0275|consen 261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--------------------- 317 (508)
T ss_pred ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---------------------
Confidence 567899 888999999999999999999999999999999987 66666776666666
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++++.|.++++.-+.+|+++..+ .+|++-|+...|.+||.++++++.||+|++|+..+.+++.+|+...
T Consensus 318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 778999999999999999999998777 7999999999999999999999999999999999999999988644
Q ss_pred C--CeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 160 K--GISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~--~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
. +|+++-.-|.+ ..++++. +++++-++ .|+.++.|... .+...+...+|.|.++++.+ +|+.++.|...+
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s 468 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS 468 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence 3 78888888754 5677776 89999987 57788888532 35566778899999999988 899999999999
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
++.. .++.-+...+-.+... |..+.|++=++||.+++|.
T Consensus 469 G~LE-----~tl~VhEkdvIGl~HH-----PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLE-----RTLPVHEKDVIGLTHH-----PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Ccee-----eeeecccccccccccC-----cccchhhhhcccchhhhcC
Confidence 8755 2333333333334444 8889999999999999994
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=212.16 Aligned_cols=284 Identities=14% Similarity=0.172 Sum_probs=197.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+..| .++++.|.|..|++||.|..|++||...... ...|+... -.....+..+.|.+.
T Consensus 167 tk~V--sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--------------P~E~h~i~sl~ys~T----- 225 (641)
T KOG0772|consen 167 TKIV--SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--------------PCETHQINSLQYSVT----- 225 (641)
T ss_pred ceEE--EEeeecCCCceeeeccccceEEEEecccccccchhhhccC--------------cccccccceeeecCC-----
Confidence 3456 5569999999999999999999999875432 11122111 001223344444443
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEE-----------ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-----------~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~ 149 (579)
+..|++.+.....+|+|-..-+.... ..+||...++|.+|+|+.+ .|++++.||++++||+...
T Consensus 226 ----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 226 ----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred ----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 78899999999999999765443211 1368999999999999665 5999999999999998754
Q ss_pred c-eeeEeec-----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee---eEEeecCCC--CEEEEEEecCCCEEEE
Q 008041 150 S-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVLS 216 (579)
Q Consensus 150 ~-~~~~~~~-----~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~--~v~~l~~s~~~~~l~s 216 (579)
+ ..+.|+. ..-+++.++|+|||+.||+|. |+|.+|+..+... ...-..|.. .|++|.||+||++|++
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 3 3333432 223789999999999999988 9999999865322 223357776 8999999999999999
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc------CCeEEEEEcCCceeeccc
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 290 (579)
-| .|+++++||++..+..- .++.--.......-++|+ |+.+.|++|+. .|.+.+||..+.+.+..+
T Consensus 382 Rg-~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 382 RG-FDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred cc-CCCceeeeeccccccch--hhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 98 79999999999876431 111111122223445566 99999999964 568999999888877665
Q ss_pred CCeeEEeeeccCCcccccccchhhhhccccceec
Q 008041 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (579)
.-....+.... +.|. ++.|.+++.+|.++
T Consensus 454 ~i~~aSvv~~~-Whpk----LNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 454 DISTASVVRCL-WHPK----LNQIFAGSGDGTAH 482 (641)
T ss_pred cCCCceEEEEe-ecch----hhheeeecCCCceE
Confidence 54433332221 3333 45888888866433
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5.2e-25 Score=226.61 Aligned_cols=285 Identities=16% Similarity=0.131 Sum_probs=216.1
Q ss_pred eEEEEccCCCEEEEEe--CCCcEEEEECCCCe------------EEEEeccCccccccccccccccccccccccceEEee
Q 008041 9 ILTSFSPALDYFAICS--GDARIKIWDTLKGQ------------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 9 l~~~fspdg~~lasg~--~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
.++..+|||..+|+|+ .||.++||+.+.-- .+.....|.+ .++|+.|.
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~------------------sv~CVR~S 78 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG------------------SVNCVRFS 78 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC------------------ceeEEEEC
Confidence 6679999999999999 89999999875311 1222223333 45556665
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccC----------C--------eEEEEecCCCCCCEEEEEEccCCCEEEEEe
Q 008041 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------G--------QLKWRLSDCHPGGVSAISFATHGSCIYSAG 136 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----------~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~ 136 (579)
+. +.++|+|+.|+.|.||.... | +++ ..+.+|...|.+++|+|++.++++++
T Consensus 79 ~d---------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 79 PD---------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred CC---------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEec
Confidence 53 88999999999999999883 0 122 33478999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC------CCEEEEEEe
Q 008041 137 ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS 208 (579)
Q Consensus 137 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~------~~v~~l~~s 208 (579)
.|++|.+||..+.+.+.++++|.+.|..+.|+|-|++||+-+ ++|++|.+.+....+.+.++. .....+.|+
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 999999999999999999999999999999999999999987 899999988766666665443 346789999
Q ss_pred cCCCEEEEEecCCC---eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc------------EEEEEEcC
Q 008041 209 DNGKYVLSSAVGER---YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISET 273 (579)
Q Consensus 209 ~~~~~l~s~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~d 273 (579)
|||++|++.-.-.+ ++.|.+-.+.+ .-..+-.|...+.++.|++..+..... .+|+|+.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk-----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWK-----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCce-----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 99999998643333 56666654443 223444555578888888654432222 67888999
Q ss_pred CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008041 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (579)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (579)
++|.||.....+++. .+.. .....|.
T Consensus 304 rSlSVW~T~~~RPl~---------------------------vi~~---------------------------lf~~SI~ 329 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLF---------------------------VIHN---------------------------LFNKSIV 329 (942)
T ss_pred ccEEEEecCCCCchh---------------------------hhhh---------------------------hhcCcee
Confidence 999999864433321 1111 1223789
Q ss_pred EEeecCCcceeeccccceecccceeeee
Q 008041 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.++|+|||..| +.+|.|+++.+-.+++
T Consensus 330 DmsWspdG~~L-facS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 330 DMSWSPDGFSL-FACSLDGTVALIHFEE 356 (942)
T ss_pred eeeEcCCCCeE-EEEecCCeEEEEEcch
Confidence 99999999999 9999999999988753
No 76
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.9e-24 Score=216.97 Aligned_cols=204 Identities=14% Similarity=0.195 Sum_probs=162.7
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCe-------EEEEeccCccccccccccccccccccccccceEEe
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
++++| .+++|+| ++++||+|+.||+|+|||+.++. .+..+.+|.. .+.++.|
T Consensus 74 H~~~V--~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~------------------~V~~l~f 133 (493)
T PTZ00421 74 QEGPI--IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK------------------KVGIVSF 133 (493)
T ss_pred CCCCE--EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC------------------cEEEEEe
Confidence 35678 5559999 88999999999999999997653 2344444443 3455666
Q ss_pred eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008041 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 153 (579)
.|.. ..+|++|+.|+.|++||+.+++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+.
T Consensus 134 ~P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 134 HPSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred CcCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 5542 468999999999999999999877555 6799999999999999999999999999999999999999
Q ss_pred EeecCCCC-eeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 154 KFRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 154 ~~~~~~~~-v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~-~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
.+.+|.+. +..+.|.|++..+++++ +.|++||+++.. .+.....+ ...+....|+++++++++++..|+.|
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 99888764 45778999888777653 689999998754 34333333 34566678899999998887569999
Q ss_pred EEEEcCCCcc
Q 008041 225 ALWRTDGVKK 234 (579)
Q Consensus 225 ~vwd~~~~~~ 234 (579)
++||+..++.
T Consensus 285 riwdl~~~~~ 294 (493)
T PTZ00421 285 RCFELMNERL 294 (493)
T ss_pred EEEEeeCCce
Confidence 9999998763
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=216.16 Aligned_cols=232 Identities=17% Similarity=0.242 Sum_probs=189.7
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 15 pdg~~lasg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
|+++||.+||.||.|++|+...-. +...++.|...++.++.... +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t 87 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT 87 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence 467899999999999999875322 35556666666665554433 667
Q ss_pred EEEEECCCeEEEEEccCCe-EEEEecCCCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEeCCCC--ceeeE--------ee
Q 008041 89 LVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------FR 156 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~-~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~--------~~ 156 (579)
+++++.|-+|++|+...+. .....+..|.+-|.|+++ .++...+++||.|+.|.+||+.++ +.+.. +.
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred eEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 9999999999999998874 222444789999999999 888889999999999999999977 22222 22
Q ss_pred -cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 157 -ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 157 -~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
++..+|++++.++.|..+++|+ +.+++||.++++.+..+.||...|..+..++||+.+++++ .||+|++||+....
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQR 246 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccccc
Confidence 6778999999999999999998 8999999999999999999999999999999999999998 59999999999876
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
|+.+...+...+-....+ |+=.++.+|+.||.|+.=|+.+.
T Consensus 247 -----Cl~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 247 -----CLATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred -----eeeeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCc
Confidence 445555555445555555 77789999999999999888773
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=194.26 Aligned_cols=241 Identities=19% Similarity=0.268 Sum_probs=192.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++|+++ |. +|.|+|+||.|.+|+|||+........+..|.+.++++.|.+++.
T Consensus 42 H~~sitav--AV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S--------------------- 96 (362)
T KOG0294|consen 42 HAGSITAL--AV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS--------------------- 96 (362)
T ss_pred cccceeEE--Ee--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------------
Confidence 45778444 54 689999999999999999999998888888888888777776621
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.+.|++|+.||.|.+|+....+++..+ ++|.+.|+.++.+|.|+..++.+.|+.++.||+-+|+.-...+- ...
T Consensus 97 ----~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~ 170 (362)
T KOG0294|consen 97 ----KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK 170 (362)
T ss_pred ----hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence 236899999999999999999887655 78999999999999999999999999999999999876555442 233
Q ss_pred eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+.+.|+|.|.+++.+. +.|-+|.+.+......+. ....+.++.|-. +.++++|+ +|+.|.+||....... .
T Consensus 171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~ 243 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----T 243 (362)
T ss_pred ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEec-CCceEEEeccCCCccc----e
Confidence 45599999999888888 899999998877665554 234567777754 45778887 6999999999885432 2
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
....|...+-.+..+. .|++.+|++++.||.|++||++..
T Consensus 244 ~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEcccc
Confidence 3345666666666565 378899999999999999998654
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1e-24 Score=222.11 Aligned_cols=239 Identities=20% Similarity=0.278 Sum_probs=199.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+.| .+++|..-+.+|++|+.|.+++|||..+|.+...+.+|...+.++...
T Consensus 248 H~g~V--~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~------------------------- 300 (537)
T KOG0274|consen 248 HFGGV--WGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID------------------------- 300 (537)
T ss_pred CCCCc--eeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence 56778 455887778899999999999999999999999999887766543332
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
...+++|+.|.+|++|++.++.++..+ .+|.++|.++..+ +.++++|+.|++|++||..+++++.++.+|...
T Consensus 301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 345677899999999999999998555 6699999999996 789999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
|+++.+.+. +.+++|+ ++|++||+++. +++.++.+|...+..+.+. +++|++++ .|++|++||...++..
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~~--- 446 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGECL--- 446 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCcee---
Confidence 999988765 7888888 89999999999 9999999999999776654 66888887 7999999999988743
Q ss_pred eeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..+.. +...+..+.+ ....+++++.||.+++||+++++..+..
T Consensus 447 --~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 --RTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred --eeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence 44444 2233333332 2377899999999999999999887644
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=191.31 Aligned_cols=287 Identities=17% Similarity=0.190 Sum_probs=195.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+.| .+++||.||++||+++.|+.|+||+++..... .|..--. .++.+ ..+.+.|.|.-
T Consensus 85 H~~~v--t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~~R~------nve~d----hpT~V~FapDc---- 144 (420)
T KOG2096|consen 85 HKKEV--TDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRCIRQ------NVEYD----HPTRVVFAPDC---- 144 (420)
T ss_pred cCCce--eeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhHhhc------cccCC----CceEEEECCCc----
Confidence 35678 45599999999999999999999999864321 1110000 00001 11222332221
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe---EE--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~---~~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~ 150 (579)
...++.+-....+++|.....+ .. ..+.+.|...|..+-...++.+|++++.|..|.+|+++ |+
T Consensus 145 ----~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 145 ----KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred ----ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 3344445555568888875322 11 11334577788888888899999999999999999998 99
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---C-----eeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---H-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
.+..+......-+..+++|+|+++++++ -.+++|.+-- | ..+..++||.+.|..++|+|+++.+++.+ .
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-k 298 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-K 298 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-c
Confidence 9999887777778899999999999998 7899997632 2 34667899999999999999999999998 7
Q ss_pred CCeEEEEEcCCCccc--cceeee----ee-ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 221 ERYIALWRTDGVKKQ--SASCVL----AM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 221 d~~i~vwd~~~~~~~--~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
||++++||.+-.-.. ...... .+ ......+ -+..+ |+|+.|+... ...+++|..++++.....
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~-gs~l~~~~se~g~~~~~~--- 368 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSF-GSDLKVFASEDGKDYPEL--- 368 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeec-CCceEEEEcccCccchhH---
Confidence 999999998643110 000000 01 1112222 23344 8888776654 356888876665443211
Q ss_pred eEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008041 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (579)
+ ..|...|.+++|++||+++ +|++ |+.
T Consensus 369 -------------------------------------------------e--~~h~~~Is~is~~~~g~~~-atcG-dr~ 395 (420)
T KOG2096|consen 369 -------------------------------------------------E--DIHSTTISSISYSSDGKYI-ATCG-DRY 395 (420)
T ss_pred -------------------------------------------------H--HhhcCceeeEEecCCCcEE-eeec-cee
Confidence 1 1578889999999999999 9998 666
Q ss_pred ccce
Q 008041 374 KRGR 377 (579)
Q Consensus 374 ~~~w 377 (579)
+++.
T Consensus 396 vrv~ 399 (420)
T KOG2096|consen 396 VRVI 399 (420)
T ss_pred eeee
Confidence 5554
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2e-24 Score=222.42 Aligned_cols=244 Identities=18% Similarity=0.199 Sum_probs=192.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC------------------eEEEEeccCccccccccccccccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------------------QVQTEFADIASTETTSLYGNRLEREH 63 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (579)
+.++| -|+.|||||+|||+||.|+.|.||+.... ++...+.+|..
T Consensus 68 h~~sv--~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~--------------- 130 (942)
T KOG0973|consen 68 HDGSV--NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS--------------- 130 (942)
T ss_pred ccCce--eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC---------------
Confidence 45778 55599999999999999999999997731 13334444444
Q ss_pred cccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008041 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~i 143 (579)
.+..+.|.|. +.++++++.|+.|.+||..+.+.+..+ .+|.+.|.++.|.|-|+||++-+.|++|++
T Consensus 131 ---DV~Dv~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 131 ---DVLDVNWSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKV 197 (942)
T ss_pred ---ccceeccCCC---------ccEEEEecccceEEEEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEE
Confidence 4455556553 789999999999999999999777555 799999999999999999999999999999
Q ss_pred EeCCCCceeeEeecCC------CCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC-
Q 008041 144 IDPLTGSLLGKFRAST------KGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN- 210 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~------~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~- 210 (579)
|++.+....+.+..+. ..+..+.|+|||++|++.. .++.|.+-.+.+.-..|-||.+++.++.|+|.
T Consensus 198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 9988777777666543 3678999999999999976 48999998888888889999999999999972
Q ss_pred -------C-------CE-EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041 211 -------G-------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 211 -------~-------~~-l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (579)
| .| +++.|+.|++|.||.....++. .....-....+.-+.|+ |||..|+++|.||+
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl----~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DGt 348 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL----FVIHNLFNKSIVDMSWS-----PDGFSLFACSLDGT 348 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch----hhhhhhhcCceeeeeEc-----CCCCeEEEEecCCe
Confidence 1 11 4555568999999998665432 11112223344556666 99999999999999
Q ss_pred EEEEEcCCc
Q 008041 276 CYIWYGQNI 284 (579)
Q Consensus 276 i~iwd~~~~ 284 (579)
|.++.++..
T Consensus 349 V~~i~Fee~ 357 (942)
T KOG0973|consen 349 VALIHFEEK 357 (942)
T ss_pred EEEEEcchH
Confidence 999987654
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.9e-25 Score=202.96 Aligned_cols=240 Identities=16% Similarity=0.291 Sum_probs=193.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..|| ..+.||||.+||++|+.|..+++||+.+|.+...+.. + ++...++++|.|.
T Consensus 269 ~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD------ 323 (519)
T KOG0293|consen 269 SQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD------ 323 (519)
T ss_pred cCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC------
Confidence 4577 6679999999999999999999999999998876641 2 3556778999986
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++|+.|+.+..||...+..- ....-....|.+++..+||+++++.+.|..+++++.++......+. ...+|
T Consensus 324 ---g~~~V~Gs~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~i 398 (519)
T KOG0293|consen 324 ---GFRFVTGSPDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPI 398 (519)
T ss_pred ---CceeEecCCCCcEEEecCCcchhh-cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCce
Confidence 666999999999999999866532 2212233569999999999999999999999999987665554444 45689
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE--EEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
++.+++.||+++++.- ..|++||++..+.++++.||...- ..-+|-- +..++++|+ +|+.|+||+..+++.
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkl--- 474 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKL--- 474 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCce---
Confidence 9999999999988876 899999999999999999998542 2224543 446777765 899999999999874
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
+..+..+...+.|+.|++ .+..++|+++.||+|+||...
T Consensus 475 --l~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 475 --LAVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred --eEeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCC
Confidence 467778888899999983 256789999999999999754
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=8.5e-26 Score=194.84 Aligned_cols=242 Identities=15% Similarity=0.240 Sum_probs=204.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| +.++.+.+...-|+++.|-+-+|||.-+|..+..|. |..-+....|+.+
T Consensus 59 kgav--w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------ 111 (334)
T KOG0278|consen 59 KGAV--WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------ 111 (334)
T ss_pred Ccce--eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence 4677 767888888888999999999999999999988875 4445555555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
...|++|+.+.-++|||++..+....-..+|++.|..+-|....+.|++++.|++|++||.+++..++++. ...+|
T Consensus 112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V 187 (334)
T KOG0278|consen 112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV 187 (334)
T ss_pred ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence 67799999999999999998776544457899999999999988999999999999999999999999887 46789
Q ss_pred eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++.++++|+++.++. +.|..||..+...++.+. -...|.+...+|+...+++++ +|..++.||..++.... .+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~---~~ 262 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIG---SY 262 (334)
T ss_pred cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCceee---ec
Confidence 9999999999999998 899999999988888775 456789999999998888777 89999999999997551 12
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
. ..+...+.|+.|+ |+|...++||+||+|++|....++.
T Consensus 263 n-kgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 N-KGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred c-cCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence 2 3445567888898 9999999999999999998665544
No 84
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-25 Score=202.70 Aligned_cols=261 Identities=16% Similarity=0.166 Sum_probs=208.0
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
..+++|+.||.|++||+...++...+ ++|.+.|.++++.. ..+++++.|.+|+.|-+. +.+..++.+ ...+..+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~~gId 154 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVYLGID 154 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeec-cccccccc
Confidence 56899999999999999999988666 78999999999976 578899999999999975 457777765 45677888
Q ss_pred EccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 167 ~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
-+..+..+++++..|.|||.+-..++..+......|.++.|+|....++.++..|+.|.+||++...... ..+..+
T Consensus 155 h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~m--- 230 (433)
T KOG0268|consen 155 HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTM--- 230 (433)
T ss_pred cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeec---
Confidence 8888889999999999999998889999998889999999999877665555579999999999987552 122222
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce-eecccCCeeEEeeeccCCcccccccchhhhhccccceecC
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
-...++|+ |.+-.++++++|..++.||....+ .+..+..+...+...+ |+|.|+ .+++|+.|..+++
T Consensus 231 --RTN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~----EfvsgsyDksIRI 298 (433)
T KOG0268|consen 231 --RTNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQ----EFVSGSYDKSIRI 298 (433)
T ss_pred --cccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cCCCcc----hhccccccceEEE
Confidence 22446676 888889999999999999987763 4556666666666666 899999 8999999987776
Q ss_pred CceEEEEEeCCCCCceeEEEecCC---CCcEEEeecCCcceeeccccceecccceee
Q 008041 326 ASVHTFVAYGLLLKPSFQKILVNS---GEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+.. ...... -..|. ..|.++.||.|.+|+ +|||+|+.+++|..
T Consensus 299 f~~-----~~~~SR-----diYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 299 FPV-----NHGHSR-----DIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA 344 (433)
T ss_pred eec-----CCCcch-----hhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeec
Confidence 431 100000 01222 358999999999999 99999999999976
No 85
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.4e-23 Score=211.58 Aligned_cols=182 Identities=10% Similarity=0.105 Sum_probs=142.5
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCc--------eeeEeecCCCCe
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI 162 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~v 162 (579)
|+..|.|++|+......+..+ .+|.++|.+++|+|+ +++|++|+.|++|++||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 455678999998876665444 789999999999996 7899999999999999997642 344678899999
Q ss_pred eEEEEccCCCEE-EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 163 ~~l~~~p~g~~l-~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.+++|+|++..+ ++++ +.|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||+++++..
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i---- 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA---- 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE----
Confidence 999999998765 5665 899999999998877776 667899999999999998887 7999999999987633
Q ss_pred eeeeecCceeE--EeEEecCCcccCCCcEEEEEEcCC----eEEEEEcCC
Q 008041 240 VLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 283 (579)
..+..+.... ..++. ..+++++.+|++++.|+ +|++||+++
T Consensus 203 -~tl~gH~g~~~s~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 -SSFHIHDGGKNTKNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred -EEEecccCCceeEEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 3333332221 11111 11227889999988774 799999875
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=212.87 Aligned_cols=335 Identities=13% Similarity=0.095 Sum_probs=234.1
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE---EeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+++|.|++...+|.+...|..|+|||++.-..+. .+--|...+..+.--+- .-| ...- .-.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~--nv~-~~~~-------------acl 390 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC--NVH-SPTA-------------ACL 390 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc--ccc-Cccc-------------ccC
Confidence 4788999999999999999999999998643321 12222222221111000 000 0000 001
Q ss_pred CCcEEEEEECCCeEEEEEccCCe---EEEE-ec--------------------------------CCCCCCEEEEEEccC
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQ---LKWR-LS--------------------------------DCHPGGVSAISFATH 128 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~---~~~~-~~--------------------------------~~h~~~V~~l~~~~~ 128 (579)
....+.+++.||+|++||+..+. ...+ ++ -+-...+.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 25568999999999999998621 1100 00 012246899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCE
Q 008041 129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAV 202 (579)
Q Consensus 129 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v 202 (579)
|++|++|..-|.+++||+.+-+....+.+|+..|.|+.|+- ..++||+++ .-|+|||+.. -.++.++.+|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999999999999888889999999999999985 357888888 6899999874 45678899999999
Q ss_pred EEEEEecCC--CEEEEEecCCCeEEEEEcCCCccccceeeeeeecC---ceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041 203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 203 ~~l~~s~~~--~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (579)
+++.|.-.| ..++++| .|+.|..-..+..... .++...++ ...+.-+.. +|..++++++++|..|+
T Consensus 551 TsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g---~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSG---RLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred eEEEEeecCCceEEEecc-CchhhheehhccccCc---eeccccccccccceEEEeee-----CCCcceEEEEecccceE
Confidence 999998776 6778887 6887654332221111 11111111 112222333 38999999999999999
Q ss_pred EEEcCCceeecccCCeeEEeeec--cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008041 278 IWYGQNIEELRNTKATKILSSSE--DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (579)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (579)
|||++++++.+.+++....-... ....|.+. ++++.+.|..+-.+| -....+..++.||...|+.+
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~~D--------f~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCFVD--------FVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEEEE--------eccchhhhhhcCcchheeee
Confidence 99999999998877654331111 11244544 788888876433322 33456777888999999999
Q ss_pred eecCCcceeeccccceecccceeee
Q 008041 356 NCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.|++|-++| +|.|.|+.|.+|.+-
T Consensus 690 kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 690 KFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred eecccchhh-eeecCCceEEEEECc
Confidence 999999999 999999999999873
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.1e-24 Score=180.26 Aligned_cols=243 Identities=15% Similarity=0.172 Sum_probs=189.2
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-----eeEeecCCCCeeEEEEcc----CCCEEEEEC-C--eE
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRASTKGISCMAVSS----DGKMLATAA-G--QL 181 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~p----~g~~l~~~~-~--~i 181 (579)
+.|.+.|.|.+|+|+|+.+++|+.|++|++.-+....+ -..|.-|.+.|..++|.. .|.++++++ | .|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 56899999999999999999999999999976653322 234777899999999964 356788887 4 67
Q ss_pred EEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-------cCceeEEeEE
Q 008041 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-------HPAVFMDCRC 254 (579)
Q Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 254 (579)
++-|...|+.+..+.+|.+.|.++- +=+|-.+++++ .|.+|+.||++-... +.++. -....+..++
T Consensus 166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgs-qdktirfwdlrv~~~-----v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGS-QDKTIRFWDLRVNSC-----VNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccC-CCceEEEEeeeccce-----eeeccCcccCCCcccceeEEEE
Confidence 7778889999999999999998762 33466777766 899999999988653 33332 1124456666
Q ss_pred ecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEe
Q 008041 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY 334 (579)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (579)
.. |.|+.|++|-.|....+||++.++.++.+.|+...+.+.. |+|... ++++++.|..++..| ..
T Consensus 239 vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-fsp~a~----yllt~syd~~ikltd-----lq 303 (350)
T KOG0641|consen 239 VD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-FSPGAH----YLLTCSYDMKIKLTD-----LQ 303 (350)
T ss_pred EC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-eCCCce----EEEEecccceEEEee-----cc
Confidence 66 9999999999999999999999999999888887777665 777766 899999886555533 23
Q ss_pred CCCCCceeE-EEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 335 GLLLKPSFQ-KILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 335 g~~~~~~~~-~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
|.......- .+..|...++.+.|.|..--+ +|.|.|++..+|-.
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~ 348 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL 348 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence 443333222 334599999999999998877 89999999999964
No 88
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.8e-24 Score=195.38 Aligned_cols=239 Identities=16% Similarity=0.225 Sum_probs=187.7
Q ss_pred CCCcccceEEEEc-cC--CCEEEEEeCCCcEEEEECCCCeEEEE----eccCccccccccccccccccccccccceEEee
Q 008041 2 GSSNIRDILTSFS-PA--LDYFAICSGDARIKIWDTLKGQVQTE----FADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 2 ~~~~V~~l~~~fs-pd--g~~lasg~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
+++||+++ ++- ++ ...|++++.|.++++|.++.+..... -+||...+.++....+
T Consensus 143 ht~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s---------------- 204 (423)
T KOG0313|consen 143 HTGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS---------------- 204 (423)
T ss_pred CCcceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----------------
Confidence 35677544 332 22 23699999999999999987764322 2255555544443333
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCC------------------------eEEEEecCCCCCCEEEEEEccCCC
Q 008041 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG------------------------QLKWRLSDCHPGGVSAISFATHGS 130 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~~~~~ 130 (579)
+..+++|+.|..|.+|+..+. +....++.+|+.+|.++.|++ ..
T Consensus 205 -----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~ 272 (423)
T KOG0313|consen 205 -----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT 272 (423)
T ss_pred -----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence 888999999999999993210 001233579999999999988 66
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCCEEEE
Q 008041 131 CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRFM 205 (579)
Q Consensus 131 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~---~~~~~~~h~~~v~~l 205 (579)
.+++++.|.+|+.||+.++..+.++.+ ...++|+..+|..++|++|+ ..|++||.+++. ...+|.+|.+.|.++
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv 351 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV 351 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence 899999999999999999999988875 45899999999999999998 899999999763 356789999999999
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.|+|...+.+.+++.|+++++||+++.+. .++.+..+...+-++.|. ++..|++|+.|++|++|..
T Consensus 352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~----plydI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA----PLYDIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ecCCCCceEEEEEecCCeEEEEEeccCCC----cceeeccCCceEEEEecc------CCceEEeccCcceEEEecc
Confidence 99998887666666899999999999763 346666667777777784 7889999999999999964
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=3.2e-24 Score=187.03 Aligned_cols=276 Identities=13% Similarity=0.126 Sum_probs=213.3
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+..|++.+ .|+.+|.+|.+|+.|.++.||-..+|+.+-++.+|.+.+.++....+
T Consensus 9 HERplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~----------------------- 63 (327)
T KOG0643|consen 9 HERPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD----------------------- 63 (327)
T ss_pred CccccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-----------------------
Confidence 35688666 99999999999999999999999999999999998887775544433
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCC-------CC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPL-------TG 149 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----d~~v~iwd~~-------~~ 149 (579)
...+++|+.|.++++||+.+|+++..+. ...+|..+.|+++|++++.+.. .+.|.++|++ ..
T Consensus 64 ----s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 ----SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred ----cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 6779999999999999999999987773 5678999999999998777643 4679999988 44
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
++..++..+...++.+-|.|-++.|++|. |.|..||.++|+. +..-..|...|+.+.++||..++++++ .|.+-++
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl 216 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKL 216 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCcccee
Confidence 56788888889999999999999999998 9999999999854 555578999999999999999999987 7999999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCC-------------eEEEEEcCCceeecccCC
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETG-------------VCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg-------------~i~iwd~~~~~~~~~~~~ 292 (579)
||..+-+.. .+. .....+.+++++ |--.+++.|+ ++. ..++|++-..+.+...++
T Consensus 217 ~D~~tl~v~-----Kty-~te~PvN~aais-----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG 285 (327)
T KOG0643|consen 217 VDVRTLEVL-----KTY-TTERPVNTAAIS-----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG 285 (327)
T ss_pred eeccceeeE-----EEe-eecccccceecc-----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc
Confidence 999987643 222 233345556665 6555555443 322 122333333344444555
Q ss_pred eeEEeeeccCCcccccccchhhhhccccceecC
Q 008041 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
+-..+.+.+ +.|+++ .-.+|..||.++.
T Consensus 286 HFGPINsvA-fhPdGk----sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 286 HFGPINSVA-FHPDGK----SYSSGGEDGYVRL 313 (327)
T ss_pred cccCcceeE-ECCCCc----ccccCCCCceEEE
Confidence 544444444 788888 7788888775543
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=217.62 Aligned_cols=239 Identities=15% Similarity=0.210 Sum_probs=178.5
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---------------------------------------------
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------------------------------------------- 148 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--------------------------------------------- 148 (579)
.+|.+.|+++.|++||+|||+||.|+.|+||.+..
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 38999999999999999999999999999998654
Q ss_pred ---------------CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-C
Q 008041 149 ---------------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-N 210 (579)
Q Consensus 149 ---------------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~ 210 (579)
.++++.|.+|.+.|..+.|+.+ .+|++++ .+|++|++...++++.|. |...|+|++|+| |
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 0123455689999999999965 5777777 899999999999999997 999999999999 6
Q ss_pred CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.+||++|+ -|+.++||++...+.. ....-...++.++|. |||++.++|+.+|.+++|+....+.....
T Consensus 422 DryFiSGS-LD~KvRiWsI~d~~Vv------~W~Dl~~lITAvcy~-----PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 422 DRYFISGS-LDGKVRLWSISDKKVV------DWNDLRDLITAVCYS-----PDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred CCcEeecc-cccceEEeecCcCeeE------eehhhhhhheeEEec-----cCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 67899887 7999999999887532 222334678889998 99999999999999999998766543211
Q ss_pred C-----C---eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC--CcEEEeecCC
Q 008041 291 K-----A---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQD 360 (579)
Q Consensus 291 ~-----~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~d 360 (579)
. . ....+.....+..+.. .++..+.|..|+++|+ .......+++|+.+ ..+...|+.|
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~----~vLVTSnDSrIRI~d~--------~~~~lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPD----EVLVTSNDSRIRIYDG--------RDKDLVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCC----eEEEecCCCceEEEec--------cchhhhhhhcccccCCcceeeeEccC
Confidence 0 0 0012222221222211 4556666665655443 11223335555333 3577789999
Q ss_pred cceeeccccceecccceee
Q 008041 361 GVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 361 g~~l~~s~s~d~~~~~w~~ 379 (579)
|++| +++|+|..+++|+.
T Consensus 558 gk~I-Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 558 GKHI-VSASEDSWVYIWKN 575 (712)
T ss_pred CCEE-EEeecCceEEEEeC
Confidence 9999 99999999999997
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6e-23 Score=174.67 Aligned_cols=246 Identities=20% Similarity=0.282 Sum_probs=192.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccCccccccccccccccccccccccceEEeeecc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
.+.| .|.+|||+|+++|+|+.|.+|++.-.....+ -.+|.-|.+.+..+.|..+ .
T Consensus 89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~ 148 (350)
T KOG0641|consen 89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P 148 (350)
T ss_pred CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence 4667 6779999999999999999999975543222 2344555555555555433 1
Q ss_pred cccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
.. ++.++++++ .|.+|++-|..+|+....+ .+|++.|.++- +-+|-.|++|+.|.+|++||++-..++.++.
T Consensus 149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 11 144455443 4556888899999887555 78999999874 3368899999999999999999888887754
Q ss_pred c--C-----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 157 A--S-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 157 ~--~-----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
. | ...|.++++.|.|+++++|. ....+||++.++.+..|..|...|.++.|+|...|+++++ .|..|++-
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt 300 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT 300 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence 2 1 24799999999999999998 7899999999999999999999999999999999999987 79999999
Q ss_pred EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
|++..-......+...+|....+.+.+. |..-.+++.+.|.++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEeccC
Confidence 9987643323345556788888887766 677778899999999999653
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=195.82 Aligned_cols=256 Identities=17% Similarity=0.199 Sum_probs=195.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccc-cc-ccccccccceEEeeecccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LE-REHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~w~~~~~~~~ 81 (579)
-+| ++|+++||+.+.++++.||+|.=|++.+|+...-+-... .+....+.+. .. .+|.. .+.+++-.+
T Consensus 143 ~s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r~~h~k-eil~~avS~------ 212 (479)
T KOG0299|consen 143 LSV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESRKGHVK-EILTLAVSS------ 212 (479)
T ss_pred Ccc--eEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCcccccccc-eeEEEEEcC------
Confidence 356 788999999999999999999999999998652221111 1111111111 00 12222 222333333
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
++.+|++|..|..|.||+..+.+.+..+ .+|.+.|.+++|-.....+++++.|++|++|++.....+.++.+|.+.
T Consensus 213 ---Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 213 ---DGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred ---CCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 2889999999999999999999988665 789999999999988888999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
|..|....-++.+.+|+ +++++|++... ....+.+|.+.+-|++|-.+. +|++|+ .||.|.+|++...+.. +
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~-HfvsGS-dnG~IaLWs~~KKkpl---f 362 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE-HFVSGS-DNGSIALWSLLKKKPL---F 362 (479)
T ss_pred eeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc-ceeecc-CCceEEEeeecccCce---e
Confidence 99999998888877776 89999999543 344678899999999998765 678887 7999999999887654 3
Q ss_pred eeeeecCc----------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 240 VLAMEHPA----------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 240 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
+....|+. ..++.++.. |...++++|+.+|.|++|-+.++
T Consensus 363 ~~~~AHgv~~~~~~~~~~~Witsla~i-----~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 363 TSRLAHGVIPELDPVNGNFWITSLAVI-----PGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EeeccccccCCccccccccceeeeEec-----ccCceEEecCCCCceEEEEecCC
Confidence 33333321 144445554 88999999999999999987655
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.3e-24 Score=188.21 Aligned_cols=278 Identities=12% Similarity=0.185 Sum_probs=215.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++-......+.+++.|.+.+||.+++|.|+..+.+|.+.++++.|++. +.+++
T Consensus 154 Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~l 206 (481)
T KOG0300|consen 154 VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLL 206 (481)
T ss_pred ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEE
Confidence 344455568889999999999999999999999999999998888876 77888
Q ss_pred EEECCCeEEEEEc------cCC------------------------------e----EEEEecCCCCCCEEEEEEccCCC
Q 008041 91 LGTGGGDVLALAV------SAG------------------------------Q----LKWRLSDCHPGGVSAISFATHGS 130 (579)
Q Consensus 91 ~~~~~g~i~iwd~------~~~------------------------------~----~~~~~~~~h~~~V~~l~~~~~~~ 130 (579)
+++.|++-+||.. ... . .+.. +.+|.+.|.+..|...|+
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcc
Confidence 8999998888872 110 0 0111 357999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEE
Q 008041 131 CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 131 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~ 207 (579)
.+++++.|.+-.+||+++|..+..+.+|....+.++-+|..+++++++ .+.++||.+.. ..+..|+||...|++..|
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 999999999999999999999999999999999999999999999998 69999999854 457889999999999999
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 208 s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
..+.+ +++++ +|++|++||+++.... +.++..... +.-+..+ ..+..|+.--.+..|++||+...+.-
T Consensus 366 ~~dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS~-~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 366 NTDDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDSP-ANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred ecCCc-eeecC-CCceEEEeeeccccCc----ceeeecCCc-cceeEee-----cCCceEEeccCCceEEEEecCCCccc
Confidence 98764 67776 7999999999987533 233322222 2233343 44456666666779999998544321
Q ss_pred cccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc--ceee
Q 008041 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLP 365 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~ 365 (579)
+ .+. . .-.+|..-|.|++|..+- +-|
T Consensus 434 R-lPr-------------t-------------------------------------sRqgHrRMV~c~AW~eehp~cnL- 461 (481)
T KOG0300|consen 434 R-LPR-------------T-------------------------------------SRQGHRRMVTCCAWLEEHPACNL- 461 (481)
T ss_pred c-CCc-------------c-------------------------------------cccccceeeeeeeccccCccccc-
Confidence 1 100 0 112677778888888654 456
Q ss_pred ccccceecccceeee
Q 008041 366 MSQSLLKSKRGRYVQ 380 (579)
Q Consensus 366 ~s~s~d~~~~~w~~~ 380 (579)
++++.|..+.-|++.
T Consensus 462 ftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKIN 476 (481)
T ss_pred ccccccceeeeeEec
Confidence 899999999999883
No 94
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.9e-23 Score=193.83 Aligned_cols=280 Identities=17% Similarity=0.158 Sum_probs=208.8
Q ss_pred EEeCC-CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC-eEE
Q 008041 22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG-DVL 99 (579)
Q Consensus 22 sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-~i~ 99 (579)
+++.| ..+.+||+++|....++++..... +|.. ....+.+++++.... .+.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~sl----------------~~l~~~yllsaq~~rp~l~ 64 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AASL----------------TALNNEYLLSAQLKRPLLH 64 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCccccc-----------chhh----------------hhhchhheeeecccCcccc
Confidence 33445 459999999999998887531100 0000 000134556655544 499
Q ss_pred EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-
Q 008041 100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178 (579)
Q Consensus 100 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~- 178 (579)
+|.+......... .--.++|.+++-+|+|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+-||.+|++|+
T Consensus 65 vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 65 VWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 9998876544322 12457899999999999998888999999999999999999999999999999999999999999
Q ss_pred -CeEEEEECC---------CCeeeEEeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 179 -~~i~vwd~~---------~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|.|.+|++. +-+++..|..|.-+|+.+...+. ..++++++ .|+++++||+..+... .++. .
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~-f 216 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTIT-F 216 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEe-c
Confidence 999999763 34668889999999999988765 35788887 8999999999998643 3332 3
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
+..+.++..+ |.++.+++|+.+|.|.+.++....... ..+. .+
T Consensus 217 p~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~------~~v~--------~k------------------ 259 (476)
T KOG0646|consen 217 PSSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQS------AGVN--------QK------------------ 259 (476)
T ss_pred CCcceeEEEc-----ccccEEEecCCcceEEeeehhcCCccc------cccc--------cc------------------
Confidence 3445667776 999999999999999998864332100 0000 00
Q ss_pred ceEEEEEeCCCCCceeEEEecCCC--CcEEEeecCCcceeeccccceecccceeeee
Q 008041 327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.+..-...+..+.||.+ .|+|++.+-||.+| +||++|+.+.+|++..
T Consensus 260 -------~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 260 -------GRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYS 308 (476)
T ss_pred -------ccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecch
Confidence 01112233456778888 89999999999999 9999999999999964
No 95
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2e-22 Score=190.41 Aligned_cols=345 Identities=12% Similarity=0.091 Sum_probs=242.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc---ccccceEEeeeccccccc---
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL---SVDYTCMKWLSVDRKKKR--- 82 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~w~~~~~~~~~--- 82 (579)
+|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.+++...+ |.+ ..+...+.|...-.+...
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceEEeccccccccccccC
Confidence 8889999996 568999999999999888877777788888887766544 221 234455667632211100
Q ss_pred ----------ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041 83 ----------KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 83 ----------~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 152 (579)
..+..-|++|+..+.|.-=++..+-.+ ...+|....+.++.+|+.+.+++++.|+.+++|+ ..+.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~--~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL--TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE--EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 001222778888777777777666543 2257999999999999999999999999999999 55555
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
.+.. -..++.|+.|+|.| .++.|. |...+.|.++...+..-. ...+++.++|+|+|.+|+.++ .|+.|++|-+.
T Consensus 402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs 477 (626)
T KOG2106|consen 402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVS 477 (626)
T ss_pred EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEec-CCCeEEEEEEC
Confidence 5543 35688999999999 888887 999999999865554434 489999999999999999987 79999999998
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeecc----CC-cc
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED----VN-SK 305 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~-~~ 305 (579)
..... ....-.++...+..+.|+ +|++++.+.+.|-.|..|.....+++...+..+....... .+ ..
T Consensus 478 ~~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s 549 (626)
T KOG2106|consen 478 ANGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGS 549 (626)
T ss_pred CCCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEeccc
Confidence 76533 222223444778888888 9999999999999999996554454444333222111000 00 11
Q ss_pred ccc--------ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041 306 SQK--------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 306 ~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
++. .....+++|...|.++++... .......+..+.+|...+.+++|+.+-..+ ++.+.|.++..|
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP-----c~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~qW 623 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYP-----CSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQW 623 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEccc-----cCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEEE
Confidence 111 011244444444444433221 133445677888999999999999888777 555599999999
Q ss_pred ee
Q 008041 378 YV 379 (579)
Q Consensus 378 ~~ 379 (579)
.+
T Consensus 624 ~l 625 (626)
T KOG2106|consen 624 RL 625 (626)
T ss_pred Ee
Confidence 76
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=6.1e-24 Score=196.03 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=196.6
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
++|+++ .|.+++.++++.+.|+.+++|++.+.+...++.+|...+...-|...
T Consensus 220 g~it~~--d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~------------------------- 272 (459)
T KOG0288|consen 220 GNITSI--DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS------------------------- 272 (459)
T ss_pred CCccee--eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-------------------------
Confidence 568444 99999999999999999999999999999999999888776666543
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
...+++|+.|.+|++||+....+...++.+ +.+.++..+ ...+++|..|+.|++||.++..+......+. .|+
T Consensus 273 --~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 273 --HSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVT 345 (459)
T ss_pred --ccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-cee
Confidence 344899999999999999999888777543 456677665 5568899999999999999999999988765 999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
++..+++|..+.+++ .++.+.|+++.+....+... ....+.+.|||++.|+++|+ .||.|+||++.+++..
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE-- 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE-- 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE--
Confidence 999999999999998 89999999999887777432 24478899999999999988 6999999999999855
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (579)
.+....+....+.++.|+ |.|..+++++.++.+.+|
T Consensus 423 -~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 -KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence 344444555467888888 999999999999999998
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2.7e-23 Score=196.68 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=202.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeE----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK------- 154 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~------- 154 (579)
+..+++|+.|.+|++||++.-.. ...+....+..|.++.|++.|..|++.+.....+++|- .|..+..
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQY 257 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQY 257 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchh
Confidence 78899999999999999985432 33444455667999999999999999999999999994 4543332
Q ss_pred ------eecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee-eEEee-----cCCCCEEEEEEecCCCEEEEEec
Q 008041 155 ------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 155 ------~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~-~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
-++|...++|.+|+|+.+ .+++++ |++++||+...+. +..+. +..-+++.++|+|||+.+++++
T Consensus 258 I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc- 336 (641)
T KOG0772|consen 258 IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC- 336 (641)
T ss_pred hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-
Confidence 246888999999999764 566666 9999999986543 23332 3345789999999999988887
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee-cccCCee-EEe
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL-RNTKATK-ILS 297 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~-~~~ 297 (579)
.||.|.+|+..........++.........++++.|+ +||++|++-+.|+++++||++..+.- ....+.- .--
T Consensus 337 ~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred cCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 7999999998766544333333333444588999998 99999999999999999999877542 2111111 111
Q ss_pred eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
.....|+|+.+ .|++|..--.-.. .| .+..+....+....++......|..+.|+|.=+.| +.|+.||+++++
T Consensus 412 ~tdc~FSPd~k----li~TGtS~~~~~~-~g-~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi-~~gsgdG~~~vy 484 (641)
T KOG0772|consen 412 GTDCCFSPDDK----LILTGTSAPNGMT-AG-TLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI-FAGSGDGTAHVY 484 (641)
T ss_pred CCccccCCCce----EEEecccccCCCC-Cc-eEEEEeccceeeEEEecCCCceEEEEeecchhhhe-eeecCCCceEEE
Confidence 22334889888 8888876421111 23 33444455566666777777889999999998888 677779998887
Q ss_pred ee
Q 008041 378 YV 379 (579)
Q Consensus 378 ~~ 379 (579)
--
T Consensus 485 Yd 486 (641)
T KOG0772|consen 485 YD 486 (641)
T ss_pred EC
Confidence 43
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.4e-22 Score=180.02 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=173.2
Q ss_pred eEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEE-EeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 9 ILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQT-EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 9 l~~~fsp-dg~~lasg~~dg~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
-+++||| ...+++.||.||+||+|+++. |...- ....|. .++-+++|...
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~------------------~PvL~v~Wsdd--------- 83 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD------------------GPVLDVCWSDD--------- 83 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC------------------CCeEEEEEccC---------
Confidence 3449999 556777899999999999986 34332 112222 34556666654
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
++.+++|+.|+.+++||+.+++.. .+ ..|.++|.++.|-+... .|++||.|++|+.||++...++.++.- ...++
T Consensus 84 gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvY 160 (347)
T KOG0647|consen 84 GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVY 160 (347)
T ss_pred CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceee
Confidence 677999999999999999999764 33 57999999999987665 699999999999999999988888763 45677
Q ss_pred EEEEccCCCEEEEECCeEEEEECCCCeeeEE-e-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc---cce
Q 008041 164 CMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-F-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---SAS 238 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~-~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~---~~~ 238 (579)
++..-..--.++++.+.|.+|+++++..... . ..-.-.+++++..+|....+.|+ -+|.+.+..+..+... ..+
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCceeEE
Confidence 7776543333334448999999987643211 1 12234588999999888778887 6999999988875321 122
Q ss_pred eeeeee---cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 239 CVLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 239 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
|..... ..-+.+..++|. |....|++++.||+..+||-+....
T Consensus 240 CHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred EeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhh
Confidence 322211 113345556665 9889999999999999999654433
No 99
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=181.33 Aligned_cols=248 Identities=15% Similarity=0.169 Sum_probs=179.4
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
..||.||+.|.+||+|..||.|.|||..+...-+.+.+|-. ++++++|.+. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~------------------pi~sl~WS~d---------gr 78 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR------------------PITSLCWSRD---------GR 78 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc------------------ceeEEEecCC---------CC
Confidence 57889999999999999999999999999887666665544 4556666554 77
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCC----Ce
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK----GI 162 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----~v 162 (579)
.|++++.|..|.+||+..|.+..++. ..++|+.+.|+|..+. ++.+-.+..-.+-++..+.....-....+ ..
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 89999999999999999999887773 6789999999995443 44443444455556544322111111111 23
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc----
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---- 235 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~---- 235 (579)
.+..|++.|+++++|. |.+.+||..+.+++..+.-.. ..|.++.|+..|++|+.-+ .|+.|+.|+++.-...
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccC
Confidence 3446899999999998 999999999999998887655 7899999999999999987 6999999998732111
Q ss_pred cceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeeccc
Q 008041 236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~ 290 (579)
.......+. -........+|+ .+|.|+++++. -..++||.-..|..++.+
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceeeee
Confidence 000111111 112233455565 89999999886 447999987777766544
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-21 Score=176.02 Aligned_cols=268 Identities=11% Similarity=0.092 Sum_probs=204.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+.++++++.|..+++||..+++.+..+ ..+.-.|..++|......++.++. |.+|+..++.+.+.++.|.+|...|+
T Consensus 26 G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~ 104 (311)
T KOG1446|consen 26 GLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN 104 (311)
T ss_pred CCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence 788999999999999999999998777 345567888899777777777765 88999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++.+|-+..+++++ ++|++||++..++..-+.-... ..++|.|.|-+++++. ....|++||++.-...+. ..+
T Consensus 105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~-~~~~IkLyD~Rs~dkgPF-~tf 180 (311)
T KOG1446|consen 105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALAN-GSELIKLYDLRSFDKGPF-TTF 180 (311)
T ss_pred EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEec-CCCeEEEEEecccCCCCc-eeE
Confidence 999999999999999 8999999998777655543333 3478999999888876 455999999998754422 222
Q ss_pred eee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe--eEEeeeccCCcccccccchhhhhcc
Q 008041 242 AME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT--KILSSSEDVNSKSQKSATAAIFAAK 318 (579)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (579)
.+. .....+..+.|+ |||++|+.++..+.+++.|.-+|..+.+.... .........|+|+++ +|+.|+
T Consensus 181 ~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~----Fvl~gs 251 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK----FVLSGS 251 (311)
T ss_pred ccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc----EEEEec
Confidence 332 334455667776 99999999999999999999999866544322 222223445789998 999999
Q ss_pred ccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceeccccee
Q 008041 319 LQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.||.+..|+ ......+..+.+ +..++.++.|.|.-..+ +|++ ..+.+|-
T Consensus 252 ~dg~i~vw~--------~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf-~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 252 DDGTIHVWN--------LETGKKVAVLRGPNGGPVSCVRFNPRYAMF-VSAS--SNLVFWL 301 (311)
T ss_pred CCCcEEEEE--------cCCCcEeeEecCCCCCCccccccCCceeee-eecC--ceEEEEe
Confidence 877544422 233334445555 67889999999988877 5554 5666773
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=1.4e-22 Score=189.84 Aligned_cols=256 Identities=15% Similarity=0.239 Sum_probs=186.4
Q ss_pred CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccc-cccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.+.|+.+ .+-|.. ..+|+++..+.|.|||...-.-.....+ .+.|++ ..||... ...+.|.+..
T Consensus 124 ~gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~e-g~glsWn~~~--- 189 (422)
T KOG0264|consen 124 DGEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEKE-GYGLSWNRQQ--- 189 (422)
T ss_pred Cccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeeccc-cccccccccc---
Confidence 3556555 777765 4677788899999999864332221110 111221 2355442 4457887765
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC--CCce
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSL 151 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~--~~~~ 151 (579)
...+++++.++.|.+||+..... ....+.+|.+.|..++|++ +...|.+++.|+.+.+||++ +.++
T Consensus 190 -----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 190 -----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred -----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 67799999999999999985432 2345588999999999999 44568999999999999999 5566
Q ss_pred eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 152 LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
.....+|.+.|.|++|+| ++.+||+|+ ++|.+||+++- +++.++.+|...|.++.|+|....++++++.|+.+.||
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence 667889999999999999 556777777 89999999974 56889999999999999999876544444489999999
Q ss_pred EcCCCccc---------cceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcC
Q 008041 228 RTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQ 282 (579)
Q Consensus 228 d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 282 (579)
|+..-... +...++....+...+.-..|+ |+.. .|++++.|+.++||...
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence 99754322 123345544444445545555 6655 56777899999999864
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.2e-23 Score=205.35 Aligned_cols=236 Identities=14% Similarity=0.245 Sum_probs=180.2
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+..++-..++.++.. .++||...... +...+.+ +......+..+.|.... .+
T Consensus 46 s~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~---------------kqn~~~S~~DVkW~~~~--------~N 101 (839)
T KOG0269|consen 46 SVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT---------------KQNKFYSAADVKWGQLY--------SN 101 (839)
T ss_pred eecCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc---------------ccceeeehhhcccccch--------hh
Confidence 667777777777753 67777665332 1111111 01122344567777544 78
Q ss_pred EEEEEECCCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 88 LLVLGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+|++++.+|.|.+||+.. ++.+ ..+..|.-.|+++.|++- ..+|++||.||+|++||++..+...++.+....|.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hheeecCCCcEEEEecCccccchhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 999999999999999987 3443 344789999999999984 45689999999999999999999999998888999
Q ss_pred EEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 164 CMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 164 ~l~~~p-~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.+.|+| .+..|+++. |.+++||++.. ++..++..|.++|.++.|+|++.+|++|| .|+.|+||+..+.....
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~--- 256 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP--- 256 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc---
Confidence 999999 567788887 99999999975 55778899999999999999999999998 79999999999876542
Q ss_pred eeeeecCceeEEeEEecCCcccCCC-cEEEEEEc--CCeEEEEEcC
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ 282 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~--dg~i~iwd~~ 282 (579)
..++ +....+..+.|- |.. .+|++++. |-.|+|||+.
T Consensus 257 ~~tI-nTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 257 KHTI-NTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred eeEE-eecceeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence 2232 334456667776 554 45666654 7799999974
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=186.84 Aligned_cols=237 Identities=17% Similarity=0.196 Sum_probs=197.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+.|+|+...+++++.|..|+||......+......|..++.....++. +.+
T Consensus 265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t---------------------------geY 317 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT---------------------------GEY 317 (506)
T ss_pred EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC---------------------------CcE
Confidence 55699999999999999999999999887777777777777776655555 899
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
++.++.+|...+.|++++..+...... ..-.+++.+|||||..|.+|..|+.|++||+.++..+..|.+|.++|..++|
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence 999999999999999999987555332 2245899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+.+|-+++++. +.|++||++..+...++.-.. .++.++.|.+.|++|+++| .|=+|++++-.+.. +.++..+.
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~~~~~~~ 473 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WTEIKELA 473 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ceeeehhh
Confidence 99999999998 789999999988888775332 4799999999999999986 56555555543332 33555555
Q ss_pred cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.+.....++.|. .+.+++++++.|..++++.+
T Consensus 474 ~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeec-----ccceEEeeccchhheEEeec
Confidence 555667788887 78899999999999888753
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=198.76 Aligned_cols=269 Identities=19% Similarity=0.266 Sum_probs=201.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++.||.+ ++.+ +..++++|.||++++|+-..++.+. .+.++.+-+.. .+++...
T Consensus 14 ~~DVr~v--~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~-----------------~i~y~e~---- 69 (745)
T KOG0301|consen 14 KSDVRAV--AVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIAN-----------------SICYAES---- 69 (745)
T ss_pred ccchhee--EecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeec-----------------cceeccc----
Confidence 4556555 5554 4488999999999999986665432 33333322221 1222221
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+...+++|+.|+.|.+|.....+....+ .+|...|.++....++. +++||.|.++++|-. +++...+.+|..
T Consensus 70 ----~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 70 ----DKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred ----cCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 1566999999999999999999887555 78999999999877776 999999999999985 777788999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
.|.++..-|++ .+++|+ .+|++|.- ++.+++|.+|..-|+.+++-+++. |++++ +||.|+.|++...
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge------ 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE------ 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc------
Confidence 99999999998 667776 89999975 788999999999999999998864 56777 8999999999554
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcc
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (579)
++.....+...+-++... +++..++++++|++++||+.....+.-.++......++. ... .-|++|+
T Consensus 211 ~l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~--L~N------gDIvvg~ 277 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV--LLN------GDIVVGG 277 (745)
T ss_pred eeeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE--eeC------CCEEEec
Confidence 445555555555555544 788999999999999999988655555554433222211 111 2688889
Q ss_pred ccceecCCc
Q 008041 319 LQDIVKPAS 327 (579)
Q Consensus 319 ~~~~~~~~~ 327 (579)
+||.+|.+.
T Consensus 278 SDG~VrVfT 286 (745)
T KOG0301|consen 278 SDGRVRVFT 286 (745)
T ss_pred cCceEEEEE
Confidence 988877654
No 105
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.3e-22 Score=177.83 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=178.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
+.++++|+.|-+|+|||+++......+. .|.+.|+++.|.++-. .|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 6789999999999999999988876664 5999999999998765 799999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
.++++|.|++.++.+ +.++.||+-+|+.-..+. -...-+.+.|+|.|.+++.++ .+.|-+|.+...... .
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence 999999999988876 899999999987654443 122234499999999888876 456999999887532 2
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
.+..+ ..+.++.| -++..|++|..|+.|.+||.++...+.
T Consensus 204 ~i~~~-~r~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~--------------------------------- 243 (362)
T KOG0294|consen 204 EIENP-KRILCATF------LDGSELLVGGDNEWISLKDTDSDTPLT--------------------------------- 243 (362)
T ss_pred hhhcc-ccceeeee------cCCceEEEecCCceEEEeccCCCccce---------------------------------
Confidence 22222 33455556 478999999999999999965532211
Q ss_pred eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe--ecCCcceeeccccceecccceeee
Q 008041 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~--~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.+|...|-.+. -.|++.+| +|.|.||.|++|++.
T Consensus 244 ----------------------~~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 244 ----------------------EFLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID 281 (362)
T ss_pred ----------------------eeecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence 2346777776665 34678899 999999999999985
No 106
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=8.2e-22 Score=171.59 Aligned_cols=234 Identities=15% Similarity=0.252 Sum_probs=191.9
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.|..+ +|+| +...|++++.|.+|++||.+++++........ ..-.+.|.|.
T Consensus 65 ~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-------------------eni~i~wsp~------ 117 (313)
T KOG1407|consen 65 DSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-------------------ENINITWSPD------ 117 (313)
T ss_pred cchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------------cceEEEEcCC------
Confidence 456455 7777 45799999999999999999999988765322 1224556654
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.+++++..+..|...|.++.+..... .....+..+.|+-++.+|+.....|+|.|.....-+++..+++|....
T Consensus 118 ---g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 118 ---GEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred ---CCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 788999999999999999998876544 345678899999888888877788999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.||.|+|+|+++|+|+ -.+.+||++.--+++.+..+.-+|+.+.|+.||++|++++ +|..|-|=+++++...
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~----- 266 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRV----- 266 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeE-----
Confidence 9999999999999999 7899999999999999999999999999999999999987 8999999999998743
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcC---------CeEEEEEc
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---------GVCYIWYG 281 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~ 281 (579)
..+++.....+ ++|. |...+||-++.| |++++|-+
T Consensus 267 ~eI~~~~~t~t-VAWH-----Pk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 267 WEIPCEGPTFT-VAWH-----PKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred EEeeccCCcee-EEec-----CCCceeeEEecCCCCccccccceeEEecC
Confidence 45555554444 4554 888888777653 46666644
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.4e-21 Score=172.87 Aligned_cols=217 Identities=12% Similarity=0.221 Sum_probs=164.8
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.+.|+.+ ...+ .|+|+++|+.||.|.|||+++...... .+.-....+. ...+-..+| ...++...|.|.+
T Consensus 42 HgGsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~k~~c~-v~~~h~~~H-ky~iss~~WyP~D--- 113 (397)
T KOG4283|consen 42 HGGSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIAKHKCI-VAKQHENGH-KYAISSAIWYPID--- 113 (397)
T ss_pred CCCcccee--eeccccceEEeecCCCccEEEEEeccccchhh-ccceeheeee-ccccCCccc-eeeeeeeEEeeec---
Confidence 34677777 6666 589999999999999999986541100 0000000000 111112244 4678889999987
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
..++.+++-|..+++||..+-+....+. ..+.|.+-+++|-. -.+++|..|-.|++.|+.+|..-.++.+
T Consensus 114 -----tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 114 -----TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred -----CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 7889999999999999999988766663 45778988998833 3578888899999999999999999999
Q ss_pred CCCCeeEEEEccCCCEEEE-EC--CeEEEEECCCC-eeeEE--------------eecCCCCEEEEEEecCCCEEEEEec
Q 008041 158 STKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDH-KKMQK--------------FSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~-~~--~~i~vwd~~~~-~~~~~--------------~~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
|.+.|.++.|+|...+++. |+ |.|++||++.. .+... -..|.+.|..++|+.++.++++++
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g- 265 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG- 265 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-
Confidence 9999999999998887654 44 99999999753 22222 245778899999999999999998
Q ss_pred CCCeEEEEEcCCCcc
Q 008041 220 GERYIALWRTDGVKK 234 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~ 234 (579)
.|..+++|+..++..
T Consensus 266 td~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 266 TDDRIRVWNMESGRN 280 (397)
T ss_pred CccceEEeecccCcc
Confidence 688999999988763
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.3e-22 Score=174.87 Aligned_cols=235 Identities=15% Similarity=0.209 Sum_probs=181.6
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 13 FSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 13 fspdg~~lasg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+--|+.||||+.|++|+||.++++ +++.++.+|.+++..+.|..+ . -+.+|
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP---k----------------------~G~iL 73 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP---K----------------------FGTIL 73 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc---c----------------------cCcEe
Confidence 3445899999999999999998754 467889999998888887765 0 18899
Q ss_pred EEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCCee
Q 008041 90 VLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGIS 163 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~ 163 (579)
++++.||.|.||.-..++-... ....|...|++++|.|.+ -.|++++.||.|.+.+.+.. ...+...+|.-.|+
T Consensus 74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN 153 (299)
T ss_pred eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence 9999999999999988854221 125699999999999954 45899999999999987644 23344678999999
Q ss_pred EEEEccC---C-----------CEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCC----CEEEEEecCC
Q 008041 164 CMAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KYVLSSAVGE 221 (579)
Q Consensus 164 ~l~~~p~---g-----------~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~----~~l~s~~~~d 221 (579)
+++|.|. | +.|++|+ +.|+||+..+++ .-+++.+|...|+.++|.|.- .++++++ .|
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-qD 232 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-QD 232 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-CC
Confidence 9999996 5 5688888 899999998763 345589999999999999964 4788877 89
Q ss_pred CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
|++.||..+..... ..... +..-...+-.+.|+ ..|..|++++.|+.+.+|.
T Consensus 233 g~viIwt~~~e~e~-wk~tl-l~~f~~~~w~vSWS-----~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEP-WKKTL-LEEFPDVVWRVSWS-----LSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CcEEEEEecCccCc-ccccc-cccCCcceEEEEEe-----ccccEEEEecCCcEEEEEE
Confidence 99999988743221 11111 11123333445566 8999999999999999996
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2e-22 Score=188.63 Aligned_cols=228 Identities=16% Similarity=0.214 Sum_probs=186.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.| ++++.||||+|||+|+.|..|.||+.++.+.++.|++|...+.++.|...
T Consensus 203 kei--l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g------------------------- 255 (479)
T KOG0299|consen 203 KEI--LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG------------------------- 255 (479)
T ss_pred cee--EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-------------------------
Confidence 456 88899999999999999999999999999999999999999998888765
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
...+++++.|..|++|++.....+..+ .+|.+.|.++....-++.+-+|+.|+++++|++. .+....|.++.+.+-
T Consensus 256 --t~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sid 331 (479)
T KOG0299|consen 256 --TSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSID 331 (479)
T ss_pred --ccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCee
Confidence 667899999999999999988777555 6899999999988878777777799999999994 334446888888999
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cC-----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h-----------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
|++|-.+ ..+++|+ |.|.+|++...+++.+.. .| +..|++++..|....+++++ ++|.|++|.+
T Consensus 332 cv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i 409 (479)
T KOG0299|consen 332 CVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKI 409 (479)
T ss_pred eEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEe
Confidence 9999854 5777887 999999999988877652 22 22789999999998888876 8999999999
Q ss_pred CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
..+-.. ...++.+. -..++..++|+ ++|++|++|.
T Consensus 410 ~~g~r~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagi 444 (479)
T KOG0299|consen 410 EDGLRA-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGI 444 (479)
T ss_pred cCCccc-cceeeecc-cccEEEEEEEc-----cCCCEEEEec
Confidence 887321 12344444 45566777777 8999777773
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.7e-22 Score=201.69 Aligned_cols=235 Identities=14% Similarity=0.227 Sum_probs=187.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|.|+|+++++|+.||.|++|+..+-. .-..+..+ + ..+.|.... .+.
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~------------------g---~~v~~ia~~--------s~~ 68 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS------------------G---ELVSSIACY--------SNH 68 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc------------------C---ceeEEEeec--------ccc
Confidence 34999999999999999999999876542 11111100 1 112222221 567
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++|+.+++|.+|....++.-..+ ...+-++++++|+.+|++++.||.|-.|++.++.+......+++|+++|.++.|+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 999999999999999988753222 3356789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecC--------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
|++++||+.+ |.|++||++++.+..++.+- ...+..++|+|+|..++..+ -|+.|++|+..+....
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~--- 223 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ--- 223 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence 9999999988 99999999999877666432 34567789999977777776 5999999999988754
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
..+...+....+.++.|+ |.|+|||+++.||.|.|||.++
T Consensus 224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence 333444555557888888 9999999999999999999986
No 111
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=194.73 Aligned_cols=328 Identities=15% Similarity=0.196 Sum_probs=225.8
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEE----EEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 15 PALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 15 pdg~~lasg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
|=|.+++++..++.+.||+..+++.. ..+...... .++.+.- | +.. -+.++
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~-----------------~Ital~H-P-~TY------LNKIv 176 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGD-----------------FITALLH-P-STY------LNKIV 176 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccccccceeeeccCC-----------------ceeeEec-c-hhh------eeeEE
Confidence 34778888888999999998775111 011100000 0111111 1 000 34589
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
+|+..|.+.+||+++++.+.++ +++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.+|+...++|++++|.-|
T Consensus 177 vGs~~G~lql~Nvrt~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 177 VGSSQGRLQLWNVRTGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred EeecCCcEEEEEeccCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence 9999999999999999999888 678899999999998888999999999999999999999999966799999999999
Q ss_pred CCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-----------
Q 008041 171 GKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ----------- 235 (579)
Q Consensus 171 g~~l~~~~---~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~----------- 235 (579)
|+.+.+.+ |.+.+||++..+.+.... .|.+.|....|.|....+++++ .|+.+++|=.+++...
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCC
Confidence 98665554 899999999988876665 8989999999999988888887 6998888855421100
Q ss_pred -cceee----------------------------------------------------------ee--------------
Q 008041 236 -SASCV----------------------------------------------------------LA-------------- 242 (579)
Q Consensus 236 -~~~~~----------------------------------------------------------~~-------------- 242 (579)
+..|+ ..
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 00000 00
Q ss_pred ------------------------eec-----CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC--
Q 008041 243 ------------------------MEH-----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK-- 291 (579)
Q Consensus 243 ------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 291 (579)
+.+ ......+++.+ +-|++.+.|...|.|.+||+++|-....+.
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-----~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~ 489 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-----FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS 489 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-----ccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence 000 00112223333 678899999999999999999997765542
Q ss_pred -CeeEEeeeccCCcccccccchhhhhccccceecCCceEEEE---------------------------------EeCCC
Q 008041 292 -ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLL 337 (579)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------~~g~~ 337 (579)
.+...+.... -|+. ...+++++.+|+...++-.-.. .+...
T Consensus 490 ~ah~~~V~gla---~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 490 PAHKGEVTGLA---VDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccccCceeEEE---ecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 1221111111 0111 1156666666655444321110 01111
Q ss_pred CCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.....+.+.+|.+.++.++|||||++| ++++.|++||+||+-
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlp 606 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLP 606 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEecc
Confidence 223445667899999999999999999 999999999999984
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.6e-23 Score=192.59 Aligned_cols=272 Identities=14% Similarity=0.198 Sum_probs=208.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++..|...+++.||+ .|.|+|||+... +...++..+-.-. ...-+..+...+ +++.
T Consensus 423 cAvtIS~~trhVyTgG-kgcVKVWdis~p-------g~k~PvsqLdcl~------rdnyiRSckL~p---------dgrt 479 (705)
T KOG0639|consen 423 CAVTISNPTRHVYTGG-KGCVKVWDISQP-------GNKSPVSQLDCLN------RDNYIRSCKLLP---------DGRT 479 (705)
T ss_pred EEEEecCCcceeEecC-CCeEEEeeccCC-------CCCCccccccccC------cccceeeeEecC---------CCce
Confidence 4557888899999999 578999998643 1111111111100 011112222222 2778
Q ss_pred EEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
|++|+.-.++.|||+.......+. +..-.-.+.+++.+||.+..++|+.||.|.|||+.+...++.|++|.+.+.||.+
T Consensus 480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 999999999999999876542111 1222345788999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
++||..|.+|+ ++|+.||+++++.+.... ..+.|.++.++|++.+++.+= .++.+.+-.....++ +.+..
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yqlhl 631 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQLHL 631 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------eeecc
Confidence 99999999999 999999999987765432 467899999999999999874 788787777665542 35566
Q ss_pred CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccce
Q 008041 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (579)
++.++-.+.|. +-|+++++.+.|+-+..|...-|..+...+......+|+. +.+.+ +|++|+.+..
T Consensus 632 heScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI--S~ddk----yIVTGSGdkk 697 (705)
T KOG0639|consen 632 HESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI--SFDDK----YIVTGSGDKK 697 (705)
T ss_pred cccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeeccccCcceeeee--ccCce----EEEecCCCcc
Confidence 67777778887 8999999999999999999999988888887777777765 55666 8999998753
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.6e-21 Score=185.40 Aligned_cols=269 Identities=17% Similarity=0.158 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-EEEECC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG 95 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~ 95 (579)
++.+++++.|+.|++||..+++....+..+.. +. .+.|.+. +..+ +++..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~------------------~l~~~~d---------g~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PR------------------GITLSKD---------GKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CC------------------ceEECCC---------CCEEEEEECCC
Confidence 35788999999999999999988887764322 22 3444332 4444 566778
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l 174 (579)
+.|++||..+++....+. .+. .+..++|+|+++.++++ +.|+.+++||+.+++.+..+.. ...+.+++|+|+|+++
T Consensus 53 ~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLP-SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CeEEEEECCCCcEEEecc-CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 999999999988775553 333 35778999999987654 5689999999998887777763 3356889999999999
Q ss_pred EEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC-----
Q 008041 175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP----- 246 (579)
Q Consensus 175 ~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----- 246 (579)
+++. ..+.+||..+++....... ...+.++.|+|+++++++++..++.|++||+.+++... .......
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~ 205 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK---KITFEIPGVHPE 205 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee---eeeecccccccc
Confidence 9887 3578889998877665542 33457899999999887665468999999999875331 1111110
Q ss_pred ceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecC
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
......+.++ |++++++++ +.++.+.+||.++++.....
T Consensus 206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------------------------------- 245 (300)
T TIGR03866 206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL----------------------------------- 245 (300)
T ss_pred cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 0111234455 899986554 45778999998765432100
Q ss_pred CceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.+...+.+++|+|||.+|.++++.++.+++|++..
T Consensus 246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 01124667889999999933446689999999853
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.1e-22 Score=191.80 Aligned_cols=230 Identities=16% Similarity=0.256 Sum_probs=183.3
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+|...|||+.|++|+.-.++.|||+..-.... ++.........+..+++ .+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak 522 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK 522 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence 45899999999999999999999998655432 22221111222222222 67
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
+.+++..||.|.|||+.....+.++ ++|++.+.|+..++||..|.+|+.|.+|+.||+++++.+.... ....|.++.+
T Consensus 523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 7899999999999999998888766 7999999999999999999999999999999999998776543 3568999999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
+|.+.++++|. +.+.|...... ....+.-|.+-|.++.|.+-|+++++.| .|+.+..|...-+.. ++....
T Consensus 601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGas-----iFqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS-----IFQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCccccc-----eeeccc
Confidence 99999999998 67777765443 3445677999999999999999999998 799999999888763 355555
Q ss_pred CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
...+++|- ++ .|.++|++|+.|....+|.+
T Consensus 674 ~SsVlsCD-IS-----~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCD-IS-----FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeee-ec-----cCceEEEecCCCcceEEEEE
Confidence 55555443 33 68899999999999888864
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.9e-21 Score=173.53 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=181.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-.+.|+|.++.|+.++.||.+++||+........++ |..++.+..|.. ...
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d----------------------------~~~ 67 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD----------------------------EST 67 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC----------------------------Cce
Confidence 445999999999999999999999998876655554 344444433332 345
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++|+.||.|+.+|+.+++.. ....|..+|.|+.+++....+++||.|++|++||.+....+..+.. ...|.|+...
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~ 144 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS 144 (323)
T ss_pred EEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc
Confidence 899999999999999998874 3357999999999999888899999999999999987666666654 3488888876
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-----ccee
Q 008041 169 SDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-----SASC 239 (579)
Q Consensus 169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-----~~~~ 239 (579)
|+.|++|. ..+.+||+++.....+. ..-+-.++++++-|++.-+++++ -||.|.+=.++..+.. ...|
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhceeEEe
Confidence 55666655 79999999986553322 23456789999999877667766 6999988766655211 1222
Q ss_pred eeeeecC---ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 240 VLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
....... ...+..+.|+ |-...+++|+.||.|.+||+.+.+.+..+.+-
T Consensus 222 Hr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred eecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 2222211 2345556665 88889999999999999999999888776544
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=6.2e-22 Score=194.11 Aligned_cols=222 Identities=16% Similarity=0.264 Sum_probs=183.3
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+|-+ ++-.+++|+.|++|.+|...+......+.+|...+.++..... +. ++
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~---------------------------~~-~i 116 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED---------------------------GT-LI 116 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc---------------------------Cc-eE
Confidence 5554 4456899999999999999999999999988887765544333 33 89
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
+|+.|.++++|-... +... .++|+..|+++.+-|++ .++|||.|.+|++|. .++.+++|.+|.+-|..+++-|+
T Consensus 117 SgSWD~TakvW~~~~--l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 117 SGSWDSTAKVWRIGE--LVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ecccccceEEecchh--hhcc-cCCcchheeeeeecCCC-cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecC
Confidence 999999999997654 3323 47999999999999988 788999999999998 48899999999999999999988
Q ss_pred CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCcee
Q 008041 171 GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 171 g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
+.++-++. |.|++|++ +|+++.++.+|++-|.++...+++..++++| +|+++++|+... |...+.++...
T Consensus 191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e-------~~q~I~lPtts 261 (745)
T KOG0301|consen 191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDE-------CVQVITLPTTS 261 (745)
T ss_pred CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCc-------eEEEEecCccc
Confidence 76555554 99999999 8889999999999999999878888899988 899999999772 56677788754
Q ss_pred EEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
+-++.+- ++|. |++|+.||.|+||...
T Consensus 262 iWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 262 IWSAKVL-----LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence 4444433 4555 7889999999999765
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2.2e-22 Score=197.22 Aligned_cols=241 Identities=17% Similarity=0.213 Sum_probs=202.3
Q ss_pred ccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 6 V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
+|++ +.||+|++||+|..-|+|+||++.+-+....+..|...+.++.|+.+.. .
T Consensus 462 ~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~------------------------~ 515 (1080)
T KOG1408|consen 462 FRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL------------------------T 515 (1080)
T ss_pred eEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh------------------------h
Confidence 5555 9999999999999999999999999999888999999888888876611 1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec-----C
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA-----S 158 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~ 158 (579)
..+|++++.|.-|+|||+..+-.+...+.+|.+.|+++.|..+| ..+++++.|+.|.+--.+.......|.. .
T Consensus 516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ 595 (1080)
T KOG1408|consen 516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS 595 (1080)
T ss_pred hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence 67799999999999999998877667778999999999999877 6699999999886543321111122222 2
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
...++.+++.|..+++++++ ..|+|||+++++..+.|+ +|.+....+...|.|.|+++++ .|+++.++|+.+++
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGE 674 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEeccch
Confidence 34789999999999999998 899999999999999996 4667788889999999999988 69999999999987
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
|+..+..+...+..+.|. +|-++|++.+.||+|.||.+..
T Consensus 675 -----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 -----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECch
Confidence 556777888888888888 8999999999999999999764
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=6.7e-21 Score=180.19 Aligned_cols=315 Identities=14% Similarity=0.132 Sum_probs=226.1
Q ss_pred CcccceEEEEcc--CCCEEEEEe--CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 4 SNIRDILTSFSP--ALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~l~~~fsp--dg~~lasg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
..| -|++||+ .|.+|+... .+..+.|||++.+......+..+..+. ...|.|.+
T Consensus 155 ~GV--~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~------------------~a~FHPtd-- 212 (626)
T KOG2106|consen 155 RGV--TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVF------------------LATFHPTD-- 212 (626)
T ss_pred ccc--eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEE------------------EEEeccCC--
Confidence 346 4569998 356776654 466789999998877665554444333 34455544
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
..+++....|.+.+|+++++.+..+. +++ ...-|.|++|.++|. +++|.++|.|.||+..+.+..+...
T Consensus 213 -------~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~ 284 (626)
T KOG2106|consen 213 -------PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH 284 (626)
T ss_pred -------CcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee
Confidence 33666777899999999988765432 222 236799999999986 6799999999999998888777777
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-----------e-----------------------------EE
Q 008041 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-----------M-----------------------------QK 194 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-----------~-----------------------------~~ 194 (579)
+|.+.|.+++...+|.++- |+ ..|..||-.-.+. + .+
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 9999999999999998776 66 7899998321100 0 12
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
..+|......++.+|+...+++++ .|+.+++|+ ..+. .++.. ......++.|. |.| .++.|+..|
T Consensus 364 v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~-----~wt~~-~~d~~~~~~fh-----psg-~va~Gt~~G 428 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKL-----EWTKI-IEDPAECADFH-----PSG-VVAVGTATG 428 (626)
T ss_pred EEecccceeeEEcCCChhheeecc-CcceEEEcc--CCce-----eEEEE-ecCceeEeecc-----Ccc-eEEEeeccc
Confidence 246777788899999999999988 799999999 3221 22221 22334566776 898 999999999
Q ss_pred eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEE
Q 008041 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDIN 354 (579)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~ 354 (579)
...+.|.++...+..+.. ....+... +++++. +++.|+.|+.+|++. +..+...+....+..+ .+++.
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~-ysp~G~----~lAvgs~d~~iyiy~----Vs~~g~~y~r~~k~~g--s~ith 496 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVVR-YSPDGA----FLAVGSHDNHIYIYR----VSANGRKYSRVGKCSG--SPITH 496 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEEE-EcCCCC----EEEEecCCCeEEEEE----ECCCCcEEEEeeeecC--ceeEE
Confidence 999999999666554443 33333333 788988 999999998877642 1111222223333333 78999
Q ss_pred EeecCCcceeeccccceecccce
Q 008041 355 LNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 355 ~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
+.||+|++++ .+.|-|--+-+|
T Consensus 497 LDwS~Ds~~~-~~~S~d~eiLyW 518 (626)
T KOG2106|consen 497 LDWSSDSQFL-VSNSGDYEILYW 518 (626)
T ss_pred eeecCCCceE-EeccCceEEEEE
Confidence 9999999999 999999999999
No 119
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=3.7e-22 Score=177.61 Aligned_cols=242 Identities=16% Similarity=0.281 Sum_probs=190.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+|+++ .|+|-...|++|+.|++|++||...-...+.++... ...++.++.+.|.
T Consensus 172 ~devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q----------------d~~~vrsiSfHPs------ 227 (430)
T KOG0640|consen 172 VDEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ----------------DTEPVRSISFHPS------ 227 (430)
T ss_pred cCcccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh----------------ccceeeeEeecCC------
Confidence 3578666 999999999999999999999986543332222111 1223445555543
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-AST 159 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~ 159 (579)
+.++++|+....+++||+.+-++.... ..+|++.|+++.+++.|+..++++.||.|++||--+++++.++. +|.
T Consensus 228 ---GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~ 304 (430)
T KOG0640|consen 228 ---GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG 304 (430)
T ss_pred ---CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC
Confidence 899999999999999999998875433 36799999999999999999999999999999998999999875 455
Q ss_pred C-CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 160 K-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~-~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
+ .|.+..|..+|+++++.+ ..+++|.+.+++.+.++.|-. .--+...|+....|++.--...+.+.-||.++
T Consensus 305 gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 305 GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence 4 899999999999999998 799999999999999887541 12245678888888887654556789999998
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
.... ....+.|.+ ..+++..+ |.+.-+++++.|-.+++|-
T Consensus 385 adr~---~l~slgHn~-a~R~i~HS-----P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 385 ADRV---ALLSLGHNG-AVRWIVHS-----PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hhhh---hhcccCCCC-CceEEEeC-----CCCCceeeecccceeeeee
Confidence 8754 345555554 45666666 8999999999999999995
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.2e-22 Score=189.62 Aligned_cols=290 Identities=13% Similarity=0.167 Sum_probs=213.3
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++.||++ +.+|.|.+||+|+.||+|+||.+.+|+|+.+++- ...+.|++|.|...
T Consensus 399 Htg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------------d~~I~~vaw~P~~~--- 454 (733)
T KOG0650|consen 399 HTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------------DSEIRSVAWNPLSD--- 454 (733)
T ss_pred cCCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------------cceeEEEEecCCCC---
Confidence 45778666 8888999999999999999999999999988752 22455666655431
Q ss_pred cccCCcEEEEEEC--------------------------------CCeEEEEEccCCe----EEEEecCCCCCCEEEEEE
Q 008041 82 RKLGSSLLVLGTG--------------------------------GGDVLALAVSAGQ----LKWRLSDCHPGGVSAISF 125 (579)
Q Consensus 82 ~~~~~~~l~~~~~--------------------------------~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~ 125 (579)
..+|+++.. ++.+..|.-...+ .++.. -.|...|..+.|
T Consensus 455 ----~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtW 529 (733)
T KOG0650|consen 455 ----LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTW 529 (733)
T ss_pred ----ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE-EecCCccceeee
Confidence 122222222 2334455544211 11122 248889999999
Q ss_pred ccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCC
Q 008041 126 ATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA 201 (579)
Q Consensus 126 ~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~ 201 (579)
|..|.||++... ...|.|.++...+...-|.-..+.|.++.|+|...+|++++ ..|++||+..++.++++......
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee
Confidence 999999998765 35799999987766556766778999999999999999998 99999999998888888767788
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 202 v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
|.+++.+|.|..|+.++ .|+.+..+|+.-..+. ..++.++...++.+.|. +.-.++++|+.||++.||..
T Consensus 610 iS~msihp~GDnli~gs-~d~k~~WfDldlsskP----yk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSKP----YKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeecCCCCeEEEec-CCCeeEEEEcccCcch----hHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence 99999999999999887 7999999999876432 34566777788888886 66788999999999999953
Q ss_pred CCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCC----cEEEee
Q 008041 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNC 357 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~~~~ 357 (579)
.-...+. + +....-++.+.+|... |..+.|
T Consensus 680 ~VY~Dl~-------------------q---------------------------npliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 680 MVYNDLL-------------------Q---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred eeehhhh-------------------c---------------------------CCceEeeeeccCceeecccceEeecc
Confidence 2111110 0 0011112344555544 888999
Q ss_pred cCCcceeeccccceecccce
Q 008041 358 SQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 358 s~dg~~l~~s~s~d~~~~~w 377 (579)
+|...+| +|++.|+++++|
T Consensus 714 HP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred cCCCceE-EecCCCceEEee
Confidence 9999999 999999999998
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.3e-23 Score=204.81 Aligned_cols=231 Identities=15% Similarity=0.254 Sum_probs=198.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..|.++ ..-..++.+++|+.|..+-+|.+..-..+..+.+|..++.++.|...
T Consensus 28 saav~~l--k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~------------------------ 81 (825)
T KOG0267|consen 28 SAAVGCL--KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS------------------------ 81 (825)
T ss_pred hhhhcee--eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc------------------------
Confidence 4455444 44556789999999999999998877777778899988888888776
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
..+|+.|+.+|.|++||+..++.+..+ .+|...+..+.|+|-+.++++|+.|+.+++||.+...+...+.+|...+
T Consensus 82 ---E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 82 ---ERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred ---hhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence 778999999999999999999988655 7899999999999999999999999999999999888999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.++.|+|+|++++.++ ..+++||...|+.+.+|.+|.+.+..+.|+|..-.+..+| .|+++++||+++-+. +
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~-----I 231 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEV-----I 231 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEE-----e
Confidence 9999999999999998 8999999999999999999999999999999876666666 799999999997542 2
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
-........+.+..|+ |++..+++|.++.
T Consensus 232 ~s~~~~~~~v~~~~fn-----~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 232 SSGKPETDGVRSLAFN-----PDGKIVLSGEQIS 260 (825)
T ss_pred eccCCccCCceeeeec-----CCceeeecCchhh
Confidence 3333344556778887 9999988887654
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.3e-22 Score=184.67 Aligned_cols=245 Identities=12% Similarity=0.118 Sum_probs=185.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEE---------ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc-----
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS----- 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~---------~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~----- 150 (579)
..++++++.++.|+|||..+...... .+.+|.+.-++++|++... ++++++.|++|++||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 67888899999999999876432211 3468988888999998554 59999999999999987542
Q ss_pred --eeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECC--CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041 151 --LLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 151 --~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~ 223 (579)
....+.+|...|..++|+|- ..+|++++ +.+.|||++ +.+......+|.++|++++|+|-+.+++++++.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 34568899999999999994 45666666 899999999 556667778999999999999977766665557999
Q ss_pred EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC-CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
|.+||++.... +..++..+...+-.+.|+ |+ ...|++++.|+++.+||+..-...+.
T Consensus 297 V~LwDlRnL~~----~lh~~e~H~dev~~V~WS-----Ph~etvLASSg~D~rl~vWDls~ig~eq~------------- 354 (422)
T KOG0264|consen 297 VALWDLRNLNK----PLHTFEGHEDEVFQVEWS-----PHNETVLASSGTDRRLNVWDLSRIGEEQS------------- 354 (422)
T ss_pred EEEeechhccc----CceeccCCCcceEEEEeC-----CCCCceeEecccCCcEEEEeccccccccC-------------
Confidence 99999999764 356677777777778887 65 45678888899999999753322110
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+... .++ -..++. .-.||...|..+.|.|+-.+..+|.++|+.+.+|...
T Consensus 355 --~eda----------~dg-----ppEllF-----------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 --PEDA----------EDG-----PPELLF-----------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred --hhhh----------ccC-----CcceeE-----------EecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 000 001111 2338999999999999999887999999999999874
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.5e-21 Score=180.34 Aligned_cols=288 Identities=12% Similarity=0.144 Sum_probs=214.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++|+++ .|+|....|.+|+.||+++||.+... ..++.+.-...++.+..|++.
T Consensus 213 ~~~I~sv--~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~---------------------- 268 (514)
T KOG2055|consen 213 HGGITSV--QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN---------------------- 268 (514)
T ss_pred cCCceEE--EecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC----------------------
Confidence 4678555 99999999999999999999987532 334443333344444444443
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~-~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
+...+++++...-.+.||+.+.+...- ...++. ..+..+..+|++++|+..+..|.|.+....+++.+..++ -
T Consensus 269 ----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-i 343 (514)
T KOG2055|consen 269 ----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-I 343 (514)
T ss_pred ----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-e
Confidence 133788888888899999999876421 123333 357788899999999999999999999999999999888 4
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
.+.|..++|+.||+.|++++ |.|++||+++..++..+... +.| ++++.++++.||++|+ +.|.|.|||..+-..
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFA 421 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEecc-CcceEEEeccchhhc
Confidence 67899999999999887775 99999999999999888643 333 4677789999999987 799999999654321
Q ss_pred -ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc--CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccc
Q 008041 235 -QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
....++.++..-...++.+.|+ +|++.|+.+|. +..+++-.+.+.....+.++.
T Consensus 422 s~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~------------------ 478 (514)
T KOG2055|consen 422 STNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS------------------ 478 (514)
T ss_pred cCCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCCC------------------
Confidence 1122455666666777888888 99999888876 556776655544333222100
Q ss_pred hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
...-+.|+|++|||.|-++ +-|..++.+.+|.+
T Consensus 479 ----------------------------------n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL 511 (514)
T KOG2055|consen 479 ----------------------------------NTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKL 511 (514)
T ss_pred ----------------------------------CCcccceEEEEecCCCceE-EeecCCCceeeEee
Confidence 0122368999999999999 99999999999986
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.2e-22 Score=199.55 Aligned_cols=236 Identities=15% Similarity=0.236 Sum_probs=184.1
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fsp-dg~~lasg~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.|+. +.++||+++..|.|.+||+.. .+.+..|..|...+. ++.|.+.. ..
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~------------------~ldfh~te--------p~ 147 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN------------------KLDFHSTE--------PN 147 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcccee------------------eeeeccCC--------cc
Confidence 4553 467999999999999999976 455556666655444 55555554 67
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM 165 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l 165 (579)
+|++|+.||.|++||++..+....+ .+....|.++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 8999999999999999998877555 45788999999999 5667999999999999999865 5677899999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCcccccee
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~ 239 (579)
.|+|++.+||+|+ +.|+|||..+++. +.++. ...+|..++|-|..++.++.++ .|-.|+|||++..-..
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP---- 301 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP---- 301 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----
Confidence 9999999999999 8999999987654 33333 4578999999998876444332 5778999999886433
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
...+..+...+..++|. +.|...+.+++.||++..-.+++
T Consensus 302 ~~t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 302 YATFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ceeeeccCccccceecc----CCCceeeEeecCccHHHHhhhhc
Confidence 34555666777778886 24567899999999886554443
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.1e-21 Score=188.59 Aligned_cols=291 Identities=18% Similarity=0.215 Sum_probs=200.7
Q ss_pred cccceEEEEccCC---CEEEEEeCCCcEEEEECCCCeEE------EEeccCccccccccccccccccccccccceEEeee
Q 008041 5 NIRDILTSFSPAL---DYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 5 ~V~~l~~~fspdg---~~lasg~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
|+..+.+.|++.. ..||.+..||.|.++|....... ..+..|.. .+-.+.|.+
T Consensus 49 p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n------------------AifDl~wap 110 (720)
T KOG0321|consen 49 PVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN------------------AIFDLKWAP 110 (720)
T ss_pred CCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc------------------eeEeeccCC
Confidence 3444556787743 47888999999999998754432 22222332 344566666
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc---
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS--- 150 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~--- 150 (579)
. ...|+++++|.++++||+.+++++.. +..||...|.+++|.|.+. .|++|+.||.|.+||++-..
T Consensus 111 g---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 111 G---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred C---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 2 66799999999999999999988654 3468999999999999665 48999999999999986321
Q ss_pred ------------------------eeeEeecCCCCeeE---EEEccCCCEEEEEC---CeEEEEECCCCeeeE-------
Q 008041 151 ------------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ------- 193 (579)
Q Consensus 151 ------------------------~~~~~~~~~~~v~~---l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~------- 193 (579)
.+...+++...|.+ +.+..|...||+++ +.|+|||++......
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 11222334445555 55666888999987 799999998764322
Q ss_pred -EeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE
Q 008041 194 -KFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 194 -~~~~h---~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (579)
.+..| .-.+.++.....|.+|++.+ .|+.|++|++...... .+..+.+. ....++...+.+||+.++++
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~s---P~~~~sg~---~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSIS---PVAEFSGK---LNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcC---chhhccCc---ccceeeeeeecCCCCceEec
Confidence 22333 23466777777789998887 6999999999887643 12221111 11122222333599999999
Q ss_pred EEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC
Q 008041 270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349 (579)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~ 349 (579)
|+.|...++|.+.+.+.- + . .+.+|.
T Consensus 335 gSsd~~ayiw~vs~~e~~-----------------~-------~------------------------------~l~Ght 360 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAP-----------------P-------A------------------------------LLLGHT 360 (720)
T ss_pred cCCCcceeeeeecCccCC-----------------h-------h------------------------------hhhCcc
Confidence 999999999987554320 0 0 233677
Q ss_pred CCcEEEeecCCcceeeccccceecccceeeeece
Q 008041 350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRV 383 (579)
Q Consensus 350 ~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~ 383 (579)
..|.+++|.|....=.+++|+|..+++|++.+.+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 7888888887554322788999999999985443
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.2e-22 Score=182.82 Aligned_cols=269 Identities=10% Similarity=0.041 Sum_probs=201.2
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
|++=+|.. ..+|+|+.||.|+|||+.+..+...|+.|.+.+..+.+.. ..
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----------------------------~~ 121 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----------------------------TS 121 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----------------------------cc
Confidence 34777766 6789999999999999999999999999888777655542 34
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++++.|.+|+.|.+... ....+. ..+.+.++.-+..+..++|||.+ |.|||.....+++.+.-....|.++.|+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecC
Confidence 789999999999998763 333332 34567788877778889998765 8999999889999988777899999999
Q ss_pred cCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041 169 SDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 169 p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
|-.. +|++++ +.|.+||++++.++.++. -...-+.|+|+|.+ +.++++.+|..++.||++..+.. +.....
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~p----~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSRP----LNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccc-cceeeccccccceehhhhhhccc----chhhcc
Confidence 9665 455553 899999999998887764 23445789999955 44444558999999999886533 222334
Q ss_pred CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecC
Q 008041 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
+...+..+.|+ |.|+-+++||.|.+|+||....+..-......+.+-.....++.|.+ +|++|+.|+.+++
T Consensus 271 hvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk----yi~SGSdd~nvRl 341 (433)
T KOG0268|consen 271 HVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK----YIISGSDDGNVRL 341 (433)
T ss_pred cceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc----EEEecCCCcceee
Confidence 44555567777 99999999999999999998877543322222222111122677777 9999999887766
Q ss_pred Cc
Q 008041 326 AS 327 (579)
Q Consensus 326 ~~ 327 (579)
|.
T Consensus 342 Wk 343 (433)
T KOG0268|consen 342 WK 343 (433)
T ss_pred ee
Confidence 43
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5e-23 Score=202.48 Aligned_cols=210 Identities=15% Similarity=0.185 Sum_probs=180.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
...++.|+.+..+.+|.+..-..+.. +.+|..+|-++.|+++...+++|+.+|+|++||+..++.++++.+|...+.++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S-~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITS-LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV 118 (825)
T ss_pred ceeeccCCCceeeccccccCCchhhe-eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence 56688888888899999887766544 37899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
.|+|-|.+++.|+ +.+++||.+...+...+.+|...|..+.|+|+|+++++++ +|..++|||+..++.. ..+
T Consensus 119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef 192 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF 192 (825)
T ss_pred eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence 9999999998888 8999999998889999999999999999999999999988 6999999999988743 344
Q ss_pred ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccc
Q 008041 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
..+...+..+-|. |..-.++.|+.|+++++||+++.+.+...++....+.+.. |.++++
T Consensus 193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~ 251 (825)
T KOG0267|consen 193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK 251 (825)
T ss_pred ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence 4444444445565 8888899999999999999999999888777665555544 666665
No 128
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=8.7e-21 Score=173.36 Aligned_cols=216 Identities=15% Similarity=0.232 Sum_probs=154.7
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccc-cccccccccceEEeeecccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.|+.+....-++..+.|+-+..|.|.||++... ++.+......+....+.+-+ ..+|. ...-.+.|.|..
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~------ 223 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIK------ 223 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEecccC-ccceeeeccccc------
Confidence 344442222234557777788999999998532 11122111111111111111 11443 334467888743
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCC---ceeeEeec
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTG---SLLGKFRA 157 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~---~~~~~~~~ 157 (579)
...+++|...+.|++|.+.+|.-. ..-+.+|+..|-+++|+|.. ..|++||-||+|+|||++.+ .++. .++
T Consensus 224 --~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kA 300 (440)
T KOG0302|consen 224 --TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKA 300 (440)
T ss_pred --ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eec
Confidence 455888888999999999987643 22345799999999999954 46999999999999999988 3333 488
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---CeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCC
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~ 231 (579)
|.+.|+.|.|+.+-.+||+|+ |+++|||+++ ++++.+|+.|..+|++|.|+|... .|+++| .|.+|.+||+..
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDlsv 379 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLSV 379 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEeec
Confidence 999999999999988999998 9999999985 567899999999999999999655 444444 799999999865
Q ss_pred Cc
Q 008041 232 VK 233 (579)
Q Consensus 232 ~~ 233 (579)
..
T Consensus 380 E~ 381 (440)
T KOG0302|consen 380 EA 381 (440)
T ss_pred cC
Confidence 43
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.8e-21 Score=178.88 Aligned_cols=198 Identities=21% Similarity=0.250 Sum_probs=165.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---------CCceeeEee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---------~~~~~~~~~ 156 (579)
+.+++.|+-.|+|++|.+.+|.++..+ .+|-..|+|+.|+.||.+|++||.||.|.+|++. +-++++.|.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 778888889999999999999998655 7899999999999999999999999999999863 236788899
Q ss_pred cCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 157 ASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.|.-+|+.+...+.| ..+++++ .++++||+..+..+.++. ....+.+++.+|.++.+++|+ .+|.|.+.++...
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL 249 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence 999999999988753 5777877 899999999999988876 567899999999999999887 7999999887654
Q ss_pred cccc-----------ceeeeeeecCc--eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 233 KKQS-----------ASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 233 ~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
...+ ...+..+..+. ..++|+..+ -||..|++|+.||++.|||+.+.+.++...
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 3111 11122233333 488999998 899999999999999999999998887665
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=169.06 Aligned_cols=265 Identities=17% Similarity=0.214 Sum_probs=181.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+.|||||..|.+-+.|..+++|++-..-....- .... .....+. .+-.....+-..+|-+.... -....++++
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~---~~~~-~~~~~~~-~r~~eg~tvydy~wYs~M~s--~qP~t~l~a 127 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DGPL-NFSKHLS-YRYQEGETVYDYCWYSRMKS--DQPSTNLFA 127 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCC---CCcc-cccccee-EEeccCCEEEEEEeeecccc--CCCccceee
Confidence 489999999999999999999997422111000 0000 0000000 00111223445566542110 011277888
Q ss_pred EEECCCeEEEEEccCCeEEEEec-CCCCC---CEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceee--Eee-----cC
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLS-DCHPG---GVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLG--KFR-----AS 158 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~-~~h~~---~V~~l~~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~--~~~-----~~ 158 (579)
+.+.+.-|++||.-+|+....+. -.|.+ ...+++|+|||.+|++| ....|++||+ +.|+... ... +.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 89999999999999998865442 12433 35689999999999876 6788999998 5554222 111 12
Q ss_pred CCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 159 ~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.+-+.|++|+|... .++.|+ .++-||.-..+.++..+.+|.+.|+.+.|.++|+.|++++..|..|-.||++.....
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 45789999999554 788887 688888888888999999999999999999999999999988999999999986543
Q ss_pred cceeeeeeecCce-eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC-ceeeccc
Q 008041 236 SASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNT 290 (579)
Q Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 290 (579)
++.+..+.. ...-+.|. ..|++++|++|+.||.|++||+++ ++.....
T Consensus 287 ----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 287 ----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred ----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 233332222 23334444 238999999999999999999987 5534333
No 131
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3.2e-20 Score=182.06 Aligned_cols=341 Identities=13% Similarity=0.116 Sum_probs=223.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
.++.|+|.+..|.+++.|.++.||.-.+.. -+.... -+ ..++.....-...|++. +
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR--lG-----------e~gg~a~GF~g~lw~~n---------~ 328 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR--LG-----------EVGGSAGGFWGGLWSPN---------S 328 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCccceEEEEEE--ee-----------cccccccceeeEEEcCC---------C
Confidence 345999999999999999999999766542 222111 00 00111223334556553 6
Q ss_pred cEEEEEECCCeEEEEEccCCe-E-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------
Q 008041 87 SLLVLGTGGGDVLALAVSAGQ-L-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--------------- 149 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~-~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~--------------- 149 (579)
+.++.-+..|..++|...... . ......||.+.|++++|+|.|.++++.|.|.+-|+|---..
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 778888899999999933221 1 22334799999999999999999999999988887642200
Q ss_pred --------------------ceeeEee-----------------------------------------------------
Q 008041 150 --------------------SLLGKFR----------------------------------------------------- 156 (579)
Q Consensus 150 --------------------~~~~~~~----------------------------------------------------- 156 (579)
+.++.|.
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 0111111
Q ss_pred ----------------------------------cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEe
Q 008041 157 ----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 157 ----------------------------------~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~ 195 (579)
+|...|++++.+|+|+++|++. ..|++|+..+...+..+
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L 568 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL 568 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence 6778899999999999999987 37999999998888899
Q ss_pred ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 196 ~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (579)
.+|.-.|+.++|||||++|++.+ .|+++.+|........... ......|..++-...|+ |++++++++|.|.+
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWS-----PDEKYFATASRDKK 641 (764)
T ss_pred cccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhh-hccccccceEEEEcccC-----cccceeEEecCCce
Confidence 99999999999999999999998 7999999998655432111 11134455555555566 99999999999999
Q ss_pred EEEEEcCCc--eeecccC--CeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCC----CceeEEEec
Q 008041 276 CYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL----KPSFQKILV 347 (579)
Q Consensus 276 i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~ 347 (579)
|++|..... +.+.... +....+........+.......++.|-..|.+.++.-......+... ........+
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG 721 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence 999998776 3332211 11122222221122222222244555554544332211000000000 011223345
Q ss_pred CCCCcEEEeecCC----------cceeeccccceecccceee
Q 008041 348 NSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 348 h~~~v~~~~~s~d----------g~~l~~s~s~d~~~~~w~~ 379 (579)
|...|..+.|+|. ...+ ++|+.|.++|+.++
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv 762 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV 762 (764)
T ss_pred hHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence 8888999999965 3456 88888999998876
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=3e-19 Score=174.78 Aligned_cols=239 Identities=10% Similarity=0.082 Sum_probs=171.4
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+|+++ ++++.++.|++||..+++....+..+.. ...+.|.+. +..
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~---------g~~ 86 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-------------------PELFALHPN---------GKI 86 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-------------------ccEEEECCC---------CCE
Confidence 35999999976 5667789999999999887766543211 123344432 444
Q ss_pred EEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 89 LVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+++ +..++.|++||+.+++.+..+. +...+.+++|+|+|+.+++++.++ .+..||..+++....... ...+.+++
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 163 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE 163 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence 544 4567899999999988765553 234578899999999999888765 567789988877665442 33567899
Q ss_pred EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCC-----C--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP-----G--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 167 ~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~-----~--~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
|+|+|+.+++++ +.|++||+++++.+..+..+. . ....+.|+|++++++.+...++.+.+||+.+.+..
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~- 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL- 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-
Confidence 999999886543 899999999998877664321 1 23468899999986655435778999999876533
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeeccc
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 290 (579)
....+. ..+..+.|+ |+|++|++++ .+|.|.+||..+++.+..+
T Consensus 243 ----~~~~~~-~~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 243 ----DYLLVG-QRVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ----EEEEeC-CCcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 122222 234566777 9999998874 5899999999998876544
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-19 Score=178.42 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=186.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.|..+ +|++.| .|.+.+.+|.|.-||+.+++....+....+++.+.+.++.
T Consensus 70 rsIE~L--~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------- 121 (691)
T KOG2048|consen 70 RSIESL--AWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------- 121 (691)
T ss_pred CceeeE--EEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-------------------------
Confidence 456445 888554 6667777999999999999999998877777766666554
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----c
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~ 157 (579)
+..+++|+.||.++.++...++.... .+.-..+.|.++.|+|++..+++|+.||.|++||...+..+.... .
T Consensus 122 --~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 122 --NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred --cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 77899999999888888888887543 334456899999999999999999999999999999988766221 1
Q ss_pred ---CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 158 ---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 158 ---~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
...-|.++.|-.++ .+++|+ |+|.+||...+..+..+..|...|.+++..+++.+++++| .|+.|..|...+.
T Consensus 200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 12246677777554 677777 9999999999999999999999999999999999999998 6999999988777
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+.. ........++...+++++.. + ..+++|+.|+.+.+-....
T Consensus 278 ~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence 542 22222334555555555553 3 3899999999988865443
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3.2e-20 Score=182.13 Aligned_cols=334 Identities=13% Similarity=0.116 Sum_probs=240.2
Q ss_pred ceEEEEccC-CC-EEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 8 DILTSFSPA-LD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 8 ~l~~~fspd-g~-~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+|+++.|+ +. .+|.|+.+..|.++.-.+. +...++.+|...+.++.|+.. ++
T Consensus 148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~-------------------- 204 (764)
T KOG1063|consen 148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG-------------------- 204 (764)
T ss_pred hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence 356677773 44 4556677888888865433 567788899998888888765 11
Q ss_pred cCCcEEEEEECCCeEEEEEccCCe------------------------EEE------EecCCCCCCEEEEEEccCCCEEE
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY 133 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~------------------------~~~------~~~~~h~~~V~~l~~~~~~~~l~ 133 (579)
+.-++++++.|..|+||.+.-+. .+. .++.||.+-|.++.|+|.+..|+
T Consensus 205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 15678889999999999986433 011 22459999999999999998999
Q ss_pred EEeCCCcEEEEeCCCCcee-------eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---eeeEEeecCCCC
Q 008041 134 SAGADGMVCEIDPLTGSLL-------GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (579)
Q Consensus 134 s~~~d~~v~iwd~~~~~~~-------~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~---~~~~~~~~h~~~ 201 (579)
+++.|.++.+|...+..-+ ....+........-|+|+++.+++-+ |-.++|..... .....+.||...
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 9999999999986544211 11223344788999999999888877 89999983332 233445799999
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--------------------c-------------------------
Q 008041 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--------------------S------------------------- 236 (579)
Q Consensus 202 v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~--------------------~------------------------- 236 (579)
|..++|+|.|.||++.| .|.+-+++-.-..+.. .
T Consensus 364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~ 442 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK 442 (764)
T ss_pred ceeeeecCCCCEEEEec-cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence 99999999999999998 6988888654311100 0
Q ss_pred ----------------------------ceeee--------------------------------------------eee
Q 008041 237 ----------------------------ASCVL--------------------------------------------AME 244 (579)
Q Consensus 237 ----------------------------~~~~~--------------------------------------------~~~ 244 (579)
...++ .+-
T Consensus 443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY 522 (764)
T KOG1063|consen 443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY 522 (764)
T ss_pred HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence 00000 001
Q ss_pred cCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041 245 HPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
.|...+.+++.+ |+|+++|+++.. ..|++|+..+..+...+..+...+.... |+|+++ ++++++.
T Consensus 523 GHGyEv~~l~~s-----~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~-FSpdg~----~LLsvsR 592 (764)
T KOG1063|consen 523 GHGYEVYALAIS-----PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA-FSPDGR----YLLSVSR 592 (764)
T ss_pred cCceeEEEEEec-----CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE-ECCCCc----EEEEeec
Confidence 223344455554 899999999763 3799999999888887777777776655 899999 9999999
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
|....++.. ..+......|...+.|+--|+.+.|+||+.++ +|+|.|+++++|...+
T Consensus 593 DRt~sl~~~----~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 593 DRTVSLYEV----QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPD 649 (764)
T ss_pred CceEEeeee----ecccchhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccC
Confidence 876555432 11222222355677899889999999999998 9999999999998854
No 135
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.3e-21 Score=186.23 Aligned_cols=237 Identities=16% Similarity=0.218 Sum_probs=191.2
Q ss_pred ccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccc-cccccccccccccceEEeeeccccccc
Q 008041 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLY-GNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 6 V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
|+++ +...+|+-|+++|.|-+|++|+...+ -+..++..|...+.++++ .+.
T Consensus 76 VNDi--iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~------------------------ 129 (735)
T KOG0308|consen 76 VNDI--ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN------------------------ 129 (735)
T ss_pred HhhH--HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC------------------------
Confidence 4444 55668889999999999999999877 567777777776666655 332
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeE--E--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~--~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 152 (579)
..++++|+-|+.|.+||+.++.. + ..+..++..+|++++.++.|..|++|+..+.+++||.++++.+
T Consensus 130 ---~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki 206 (735)
T KOG0308|consen 130 ---NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI 206 (735)
T ss_pred ---ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce
Confidence 77899999999999999997722 1 1222378889999999999999999999999999999999999
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
..+++|...|.++..++||+.+++++ |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|++
T Consensus 207 mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 207 MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLR 285 (735)
T ss_pred eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccC
Confidence 99999999999999999999999998 9999999999999999999999999999999999999988 79999999998
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
+.... ..++...++...+. .. .+..-+-+++.|+.|+-|..+
T Consensus 286 n~~~~--tlick~daPv~~l~--~~------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 286 NPAKS--TLICKEDAPVLKLH--LH------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred Cchhh--eEeecCCCchhhhh--hc------cccCCceeeeccccceecCCc
Confidence 86322 23334333332221 11 222334677889999999754
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-19 Score=174.68 Aligned_cols=241 Identities=12% Similarity=0.172 Sum_probs=190.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| +++|||.+.+.||.+-.||.|.||++..+-+...+ ..|+.+..+..++|.+
T Consensus 25 Ps~I--~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------- 79 (691)
T KOG2048|consen 25 PSEI--VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------- 79 (691)
T ss_pred ccce--EEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc-------
Confidence 4678 67799999999999999999999999887654432 2255567778889983
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~~ 160 (579)
+..|++.+.+|.|.-||+.+++..... ....+.|++++.+|.+..++.|+.||.++.++...++.... +.-.++
T Consensus 80 ---~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 80 ---GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred ---CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 677999999999999999999988766 55778999999999999999999999888888877765443 444567
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
.|.+++|+|++..+++|+ |.|++||+.++..+.... +...-|.++.|-.++ .++++- .-|+|.+||..
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD-S~G~V~FWd~~ 233 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD-SAGTVTFWDSI 233 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-CCceEEEEccc
Confidence 999999999999999998 889999999987765221 123347788888776 466664 58999999999
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.+... .....+...+-++..+ +++.++++++.|+.|.-|...+.
T Consensus 234 ~gTLi-----qS~~~h~adVl~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 234 FGTLI-----QSHSCHDADVLALAVA-----DNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred Ccchh-----hhhhhhhcceeEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence 88754 2333344445556665 78899999999999988876655
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4.2e-20 Score=172.54 Aligned_cols=252 Identities=17% Similarity=0.187 Sum_probs=171.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE---EEeccCcccccc-ccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
|+|+|.|..|..|.|||+.--..+ ..+-...+.... .........+|. ..+-.+.|+..- .+.|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~--------~nVLaSg 262 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT-DAVLALSWNRNF--------RNVLASG 262 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch-HHHHHHHhcccc--------ceeEEec
Confidence 689999999999999998632211 111100000000 000000011222 122344454332 6789999
Q ss_pred ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCcee-eEeecCCCCeeEEEEccC
Q 008041 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLL-GKFRASTKGISCMAVSSD 170 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~l~~~p~ 170 (579)
+.|.+|++||+.++++...+ ..|.+.|.++.|+|. ..++++|+.|++|.+.|++.-... ..++ ..+.|-.++|+|.
T Consensus 263 saD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~ 340 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPH 340 (463)
T ss_pred CCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCC
Confidence 99999999999999998666 569999999999995 456999999999999999843222 2233 3568999999997
Q ss_pred CCEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 171 GKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 171 g~~l~~~~---~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
....+.++ |+++-+|.++. +++.+++.|.++|.+|.+++.-..+++.++.|+.|++|++...... .+......
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~~~~~ 417 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKEHSFK 417 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccccccc
Confidence 66544444 99999999975 8999999999999999999877766665668999999999876543 11111111
Q ss_pred ceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceee
Q 008041 247 AVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
-....|..+. |+- .+++.|+..+.+++||+.+...+
T Consensus 418 ~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 LGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccceeecccC-----CCcceEEEecCccceEEEeecccChhH
Confidence 1123444444 443 56777888889999998776544
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.3e-20 Score=161.04 Aligned_cols=235 Identities=17% Similarity=0.160 Sum_probs=174.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+..|++++.|+.|+|+....+.. ....+.+|.+||+.++|.. .|..|++|+.||.|.+|.-.+|+ ....+..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 77899999999999999987542 2233489999999999976 88999999999999999977663 344577899
Q ss_pred CCeeEEEEccCC--CEEEEEC--CeEEEEECCCC-e--eeEEeecCCCCEEEEEEecC---C-----------CEEEEEe
Q 008041 160 KGISCMAVSSDG--KMLATAA--GQLKTFNCSDH-K--KMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA 218 (579)
Q Consensus 160 ~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~-~--~~~~~~~h~~~v~~l~~s~~---~-----------~~l~s~~ 218 (579)
..|++++|.|.+ -.|++++ |.|.|.+.++. . .-+....|.-.|+++.|.|. | +.|+++|
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 999999999964 5677766 99999887754 1 23345789999999999986 4 5689988
Q ss_pred cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee
Q 008041 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (579)
.|+.|+||+...+.-. .-.++..+...++-+++.+..- --..+|+++++||++.||-.. .+ ..
T Consensus 183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~-~e-~e---------- 245 (299)
T KOG1332|consen 183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKD-EE-YE---------- 245 (299)
T ss_pred -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEec-Cc-cC----------
Confidence 6999999999987422 2234667777777777772210 013679999999999999643 10 00
Q ss_pred eccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
..+ ... +......+..+.||+.|.+|+++++ |+.+++|.
T Consensus 246 -------~wk------------------------------~tl---l~~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwk 284 (299)
T KOG1332|consen 246 -------PWK------------------------------KTL---LEEFPDVVWRVSWSLSGNILAVSGG-DNKVTLWK 284 (299)
T ss_pred -------ccc------------------------------ccc---cccCCcceEEEEEeccccEEEEecC-CcEEEEEE
Confidence 000 000 0012336899999999999966665 89999995
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.1e-21 Score=169.95 Aligned_cols=256 Identities=14% Similarity=0.136 Sum_probs=183.3
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~ 197 (579)
..|+.|++.|.++++|+.||.|.+||+.+...-+.+.+|..+|++++||+||+.|++++ ..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 78999999999999999999999999999998889999999999999999999999999 899999999999888876
Q ss_pred CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC---ceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 198 h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
..++|....|+|..+..+.++-.+..-.+-++..++.. ....... +..-++..|. +.|+++++|+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~fd-----r~g~yIitGtsKG 175 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVFD-----RRGKYIITGTSKG 175 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccccccccccccc-----CCCCEEEEecCcc
Confidence 78899999999965433333334555556665553321 1111111 1122223454 8999999999999
Q ss_pred eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC----ceeEEEecCCC
Q 008041 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKILVNSG 350 (579)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~h~~ 350 (579)
.+.++|..+.+.+..++...........++..+. .++.-+.|..++.++..-+...|..-. ..++.+ ..+-
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~ 250 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKL 250 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhh
Confidence 9999999999888766654411111112344444 777777888888877663433332211 111111 1333
Q ss_pred CcEEEeecCCcceeeccccceecccceee--eeceeeeccCC
Q 008041 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV--QNRVTALDRAN 390 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~--~~~~~~~~~~~ 390 (579)
...+++||.||.|+.++.+.-..+++|+- ++.++.+.+..
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 56788999999999777777899999985 33366665544
No 140
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=9.9e-20 Score=161.95 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=177.9
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd 145 (579)
.+++++|.|.. ..+++.++.||+|++|+++. |..+.+....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 29 sIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 29 SISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred chheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 44555555522 67788999999999999987 5666566678999999999999999999999999999999
Q ss_pred CCCCceeeEeecCCCCeeEEEEccCCC--EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041 146 PLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~--~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d 221 (579)
+.++ .+..+..|.++|.++.|-+... .|++|+ .+|+.||.+...++.++. -...+.++..- ...++.+. .+
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVat-a~ 175 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVAT-AE 175 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEe-cC
Confidence 9999 5567788999999999988665 889999 899999999999888876 44566666553 23555555 69
Q ss_pred CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeecc
Q 008041 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (579)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (579)
+.|.+|+++.+........-. -...+++++.- +|....+.|+-+|++-|..++.+.+...+
T Consensus 176 r~i~vynL~n~~te~k~~~Sp---Lk~Q~R~va~f-----~d~~~~alGsiEGrv~iq~id~~~~~~nF----------- 236 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESP---LKWQTRCVACF-----QDKDGFALGSIEGRVAIQYIDDPNPKDNF----------- 236 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCc---ccceeeEEEEE-----ecCCceEeeeecceEEEEecCCCCccCce-----------
Confidence 999999998765331111111 12223343332 56666699999999999988765431111
Q ss_pred CCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+-+..+. +. . ...-..|.+++|.|.-..| ++.+.||+..+|+-+
T Consensus 237 ------------tFkCHR~~-------------~~-~-------~~~VYaVNsi~FhP~hgtl-vTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 237 ------------TFKCHRST-------------NS-V-------NDDVYAVNSIAFHPVHGTL-VTAGSDGTFSFWDKD 281 (347)
T ss_pred ------------eEEEeccC-------------CC-C-------CCceEEecceEeecccceE-EEecCCceEEEecch
Confidence 00000000 00 0 0011268899999987788 787779999999964
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.5e-19 Score=159.75 Aligned_cols=242 Identities=13% Similarity=0.206 Sum_probs=172.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
-++.|++-|+.+|+|+.|++|+|||... ..+....+.|.+.+..+.+.++ .
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP------------------E------- 71 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP------------------E------- 71 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc------------------c-------
Confidence 3459999999999999999999999643 3466677777777776666555 1
Q ss_pred CCcEEEEEECCCeEEEEEccCCe-------E-EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCC-----
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQ-------L-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG----- 149 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~-------~-~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~----- 149 (579)
-+..+++++.|+++.||.-.... - ....+....+.|+++.|.| -|-.+++++.||.++||+...-
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 17889999999999999863211 1 1223345678899999999 4556999999999999986532
Q ss_pred -ceeeEee-------cCCCCeeEEEEccC---CCEEEEEC-------CeEEEEECCCC----eeeEEeecCCCCEEEEEE
Q 008041 150 -SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 150 -~~~~~~~-------~~~~~v~~l~~~p~---g~~l~~~~-------~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~ 207 (579)
.....+. .+..+..|+.|+|. ..+||.|+ +.++||....+ ..+.++.+|..+|+.|+|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 2222222 24457889999984 46788887 47889876543 346678899999999999
Q ss_pred ecCC----CEEEEEecCCCeEEEEEcCCCc---------------cccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041 208 SDNG----KYVLSSAVGERYIALWRTDGVK---------------KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 208 s~~~----~~l~s~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
.|+- ..|++++ .|| |+||.+.... ......+..+..|...+--+.|+ -.|..|.
T Consensus 232 APn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-----mtGtiLs 304 (361)
T KOG2445|consen 232 APNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN-----MTGTILS 304 (361)
T ss_pred ccccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe-----eeeeEEe
Confidence 9962 2566665 799 9999987421 00111223334444333345555 6789999
Q ss_pred EEEcCCeEEEEEcC
Q 008041 269 AISETGVCYIWYGQ 282 (579)
Q Consensus 269 ~~~~dg~i~iwd~~ 282 (579)
+.+.||+|++|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999754
No 142
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.2e-20 Score=164.45 Aligned_cols=188 Identities=14% Similarity=0.208 Sum_probs=158.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC------CC-----------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT----------- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~------~~----------- 148 (579)
...+.+++.|.+-+||.+.+|.++.++ .||.+.|+++.|++.+.++++++.|++-.||.. ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 446888999999999999999999777 789999999999999999999999999999962 11
Q ss_pred -------------------C----ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE
Q 008041 149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR 203 (579)
Q Consensus 149 -------------------~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~ 203 (579)
+ -++..+++|.+.|.+..|-..|+.+++++ .+..+||+++++.+..+.||....+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 13456788999999999999999999999 8999999999999999999999999
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
.+.-+|..+.+++++ .|.+.++||++..-. .+..+..+...+..+.|. -+..+++|+.|.+|++||+++
T Consensus 319 HcstHptQrLVvTsS-rDtTFRLWDFReaI~----sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAIQ----SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccCCcceEEEEec-cCceeEeccchhhcc----eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence 999999988888776 899999999995321 233445555566666674 557789999999999999987
Q ss_pred ce
Q 008041 284 IE 285 (579)
Q Consensus 284 ~~ 285 (579)
.+
T Consensus 388 MR 389 (481)
T KOG0300|consen 388 MR 389 (481)
T ss_pred cc
Confidence 64
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=169.79 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=160.1
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCc
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATH-GSCIYSAGADGM 140 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~ 140 (579)
...++++.|.|..+ ..++++|...|+|-+||+.+.+. -..+...|..+|.++.|+|. ...+++.|.||+
T Consensus 186 ~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 186 DRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 45788999999874 37899999999999999953321 11233679999999999994 456999999999
Q ss_pred EEEEeCCCCce--eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEE
Q 008041 141 VCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 141 v~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
|+.-|++.+.. +.........+..+.|+.+...++.++ |...+||.+++.. ...+.-|...|.+++++|...+++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999986633 333333445788899998888888777 9999999998655 666677888999999999887655
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
++++.|++.+|||++.-..... .....-.+...+..++|+ |.+..|++.+.|..|+|||..
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeecc
Confidence 5555899999999998765422 233334556677888888 888889999999999999973
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=5.9e-19 Score=165.45 Aligned_cols=281 Identities=14% Similarity=0.116 Sum_probs=201.4
Q ss_pred CCCcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCe----EEEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg--~~lasg~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
.+++| .+++|+|.- +.+|+|+.-|+|-+||+.+.+ -+..|..|..++. ++.|+|
T Consensus 185 ~~~Ri--t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs------------------~l~F~P 244 (498)
T KOG4328|consen 185 TDRRI--TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVS------------------GLKFSP 244 (498)
T ss_pred cccce--EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcccc------------------ceEecC
Confidence 35677 666999965 488889999999999995322 2334444554444 555555
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-e
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-L 152 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~ 152 (579)
.+ ...+++.+.||+|++-|+.++... ... ..-.....++.|+.+...++.+..=|...+||++++.. .
T Consensus 245 ~n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 245 AN--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred CC--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 44 667999999999999999876532 222 12345677889998888888888888999999997654 5
Q ss_pred eEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
..+.-|+..|++++++|... ++++++ ++.+|||++.-.. +.....|...|.+..|||++-.|++.+ .|..|+
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IR 394 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIR 394 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceE
Confidence 56777888999999999665 566777 8999999986322 233356999999999999988899887 799999
Q ss_pred EEEcCC--CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc-cCCeeEEeeeccC
Q 008041 226 LWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSEDV 302 (579)
Q Consensus 226 vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~ 302 (579)
|||..- .... ....+.|....-+...--+..|.|+..++++|..-..|-|||...++.+.. +.|....+.+...
T Consensus 395 v~dss~~sa~~~---p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~ 471 (498)
T KOG4328|consen 395 VFDSSCISAKDE---PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNE 471 (498)
T ss_pred EeecccccccCC---ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccccccccee
Confidence 999841 1111 223445554443333222344569999999999999999999998886665 5565556666665
Q ss_pred Ccccccccchhhhhccc
Q 008041 303 NSKSQKSATAAIFAAKL 319 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~ 319 (579)
+.|.+. .+++|+.
T Consensus 472 ~HP~~~----~~~aG~~ 484 (498)
T KOG4328|consen 472 FHPMRD----TLAAGGN 484 (498)
T ss_pred eccccc----ceeccCC
Confidence 666655 4555554
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=175.60 Aligned_cols=263 Identities=15% Similarity=0.091 Sum_probs=192.5
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~ 146 (579)
.+.++|.+. +.+|++++.+|.|++|+.... +.. .+..-+...|.+++. ++.+|++|+.+++|..|.+
T Consensus 16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 455666554 779999999999999998876 333 232337778888876 4568999999999999999
Q ss_pred CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
.+++.-..+....-++.+++|+.+|+++|.|+ -.|++.++........+.+|.++|.++.|+|.+.+|++++ .||.|
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 88876545555567899999999999999999 6899999999888999999999999999999999999987 69999
Q ss_pred EEEEcCCCccccc-eeee-eeecC-ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe-eec
Q 008041 225 ALWRTDGVKKQSA-SCVL-AMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSE 300 (579)
Q Consensus 225 ~vwd~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~ 300 (579)
++|++..+..... ..+. ..+.. ..+..-..|+ |+|..+++.+.|+.|++|+..+++....+.+..... .+.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 9999998764310 0000 01111 3344556666 999999999999999999999888776554332221 223
Q ss_pred cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCccee
Q 008041 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (579)
..|+|.|+ +|+++..++. +.++.-.. .+. ......|.+++|-|++.-+
T Consensus 238 ~~wsPnG~----YiAAs~~~g~-------I~vWnv~t----~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 238 LQWSPNGK----YIAASTLDGQ-------ILVWNVDT----HER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEcCCCc----EEeeeccCCc-------EEEEeccc----chh-ccccceeEEEecCCCCCee
Confidence 33778888 8888887553 33332111 111 1233458888888888776
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.2e-18 Score=154.07 Aligned_cols=225 Identities=12% Similarity=0.125 Sum_probs=169.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.+|+ ++|+|.++ ..+++|+-||.|+.+|+.++.... +..|..++. |+...+.
T Consensus 53 ~~~pl--L~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~------------------ci~~~~~----- 105 (323)
T KOG1036|consen 53 HGAPL--LDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIR------------------CIEYSYE----- 105 (323)
T ss_pred cCCce--eeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCCCceE------------------EEEeecc-----
Confidence 46899 99999885 477899999999999999887654 334444444 4444432
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--ST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~ 159 (579)
.+.+++|+.|+.|++||++.......+. ....|.++.. .|+.|+.|+.|..|.+||+++.......+. -+
T Consensus 106 ----~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 106 ----VGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred ----CCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence 5679999999999999999755543442 3458988887 567899999999999999987654433222 23
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCC----eeeEEeecCC---------CCEEEEEEecCCCEEEEEecCCCeE
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~----~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
-.+.|+++-|++.-+++++ |.|.+=.++.. +....|+.|. .||++|+|+|-...|+++| .||.|
T Consensus 178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V 256 (323)
T KOG1036|consen 178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIV 256 (323)
T ss_pred eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceE
Confidence 4789999999888888887 88877655544 3344566664 4799999999988999998 69999
Q ss_pred EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (579)
.+||+...+.. ..+......+..+.|+ .+|..||+++.
T Consensus 257 ~~Wd~~~rKrl-----~q~~~~~~SI~slsfs-----~dG~~LAia~s 294 (323)
T KOG1036|consen 257 NIWDLFNRKRL-----KQLAKYETSISSLSFS-----MDGSLLAIASS 294 (323)
T ss_pred EEccCcchhhh-----hhccCCCCceEEEEec-----cCCCeEEEEec
Confidence 99999987744 3344445567788887 89999999875
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.2e-18 Score=156.77 Aligned_cols=296 Identities=18% Similarity=0.222 Sum_probs=197.9
Q ss_pred CcccceEEEEcc-----CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 4 ~~V~~l~~~fsp-----dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.+| ..++|++ .-+.+|+++. .++.+|+....--++.++.-..+ .+ ....-.++|.-...
T Consensus 39 ~~I--~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~------------d~-~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 39 KPI--FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE------------DH-DESFYTCSWSYDSN 102 (385)
T ss_pred Ccc--ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC------------CC-CcceEEEEEEecCC
Confidence 566 4448875 2346777774 47889887543222222211100 11 22333456665433
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEee-
Q 008041 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR- 156 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~- 156 (579)
. ++.++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. ++++++|.|..|++||+++..++..|-
T Consensus 103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 2 2678899999999999999999998666 6899999999999965 679999999999999999999998865
Q ss_pred --cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee------e----------------E------EeecCCCCEEE
Q 008041 157 --ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------M----------------Q------KFSGHPGAVRF 204 (579)
Q Consensus 157 --~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~------~----------------~------~~~~h~~~v~~ 204 (579)
+|.+.|.++.|+++|.++++++ .+|++|++...+. . . +-.-|...|.|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 5888999999999999999999 8999999974321 0 0 11125555666
Q ss_pred EEEecCCCEEEEEecCCCeEEEEEcCCC-cc-----ccce---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041 205 MTFSDNGKYVLSSAVGERYIALWRTDGV-KK-----QSAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 205 l~~s~~~~~l~s~~~~d~~i~vwd~~~~-~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (579)
+.|- |.++++-+ -++.|..|....- +. .+.. ....+.-+...+-.+.| .++|-++.||.|.+.|.
T Consensus 257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf---~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF---AFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE---eecHHHHHHhhccCCCc
Confidence 6664 57888877 5889999988321 11 1111 11222222222222222 24488899999999999
Q ss_pred EEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008041 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (579)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (579)
+++||+++.+.... ++. . + ......|.+.
T Consensus 331 v~vwdL~~~ep~~~---ttl--~---------~-------------------------------------s~~~~tVRQ~ 359 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKC---TTL--T---------H-------------------------------------SKSGSTVRQT 359 (385)
T ss_pred EEEEECCCCCCccC---ceE--E---------e-------------------------------------ccccceeeee
Confidence 99999876543200 000 0 0 0012257888
Q ss_pred eecCCcceeeccccceecccceee
Q 008041 356 NCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+||.||.+| +-..+|+++.-|+.
T Consensus 360 sfS~dgs~l-v~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSIL-VLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEE-EEEeCCCcEEEEEe
Confidence 999999999 55556999888875
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=161.86 Aligned_cols=245 Identities=15% Similarity=0.185 Sum_probs=184.9
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..|| -+++|.|+|. .+++++.-..+..||+.+.+....-. . .|+. -..+.-+..++
T Consensus 257 ~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~-~--------------~g~e---~~~~e~FeVSh--- 313 (514)
T KOG2055|consen 257 KFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP-P--------------YGVE---EKSMERFEVSH--- 313 (514)
T ss_pred cCcc--ceeeecCCCceEEEecccceEEEEeeccccccccccC-C--------------CCcc---cchhheeEecC---
Confidence 3678 4559999998 88889988899999998887653211 0 1111 00111111111
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~- 160 (579)
.+++|++.+..|.|++....+++.+..+. -.+.|.+++|+.+++.|++++.+|.|++||++...+++.|....+
T Consensus 314 ---d~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 314 ---DSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ---CCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 17799999999999999999999886663 467899999999999999999999999999999999999885433
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCC
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~ 231 (579)
.=++++.+++|.++|+|+ |.|.|||.++ .+++.++..-...|+++.|+||++.|+.++. .+..+++-.+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 346788889999999999 9999999653 3566666666788999999999998877653 345788877766
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
-..-+ .--+...+-..++|+.|+ |.|.+++.|..+|++.+|.+.
T Consensus 469 ~TVFs--NfP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFS--NFPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeec--cCCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence 43211 000112334557889998 999999999999999999763
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.8e-18 Score=155.65 Aligned_cols=237 Identities=12% Similarity=0.173 Sum_probs=178.9
Q ss_pred EEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 10 LTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 10 ~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
.|+|+-| ..++|.|+.-|.|+|.|+.++++...+.+|..+++.+-+.|. .
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~--------------------------~ 147 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD--------------------------R 147 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------C
Confidence 4455543 348999999999999999999999999999999988877776 2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee----------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG---------- 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---------- 153 (579)
.+++++++.|..|++||+++..++..+ ..+|.+.|.++.|+++|.+|++|+.|.++++|++...+...
T Consensus 148 ~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~ 227 (385)
T KOG1034|consen 148 PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP 227 (385)
T ss_pred CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence 788999999999999999999987655 37899999999999999999999999999999997321100
Q ss_pred ------------------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCe-------------eeEEeecCC
Q 008041 154 ------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHK-------------KMQKFSGHP 199 (579)
Q Consensus 154 ------------------~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-~~~-------------~~~~~~~h~ 199 (579)
+-..|...|-|+.|- |+++++-+ +.|..|..- -.+ .+.++.-..
T Consensus 228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 112355566666665 57888766 899999761 111 123333334
Q ss_pred CCEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041 200 GAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 200 ~~v~~l~~--s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (579)
..|.-+.| .|-++.|+.+. ..|.|.+||++...... .....-......++-.+|+ .||..|+..+.|++|.
T Consensus 306 c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTVW 378 (385)
T ss_pred cceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCcc-CceEEeccccceeeeeeec-----ccCcEEEEEeCCCcEE
Confidence 55666655 56677888876 79999999999876531 1122222334556667777 8999999999999999
Q ss_pred EEEc
Q 008041 278 IWYG 281 (579)
Q Consensus 278 iwd~ 281 (579)
-||.
T Consensus 379 rwdr 382 (385)
T KOG1034|consen 379 RWDR 382 (385)
T ss_pred EEEe
Confidence 9984
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.3e-17 Score=148.83 Aligned_cols=254 Identities=11% Similarity=0.088 Sum_probs=173.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC---------Cce
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT---------GSL 151 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~---------~~~ 151 (579)
++.+++|+.|++|+|||.......+. --+.|.+.|..+.|.+ -|+.+++|+.|+++.||.=.. ...
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 78899999999999999765433222 1267999999999965 588899999999999997421 123
Q ss_pred eeEeecCCCCeeEEEEcc--CCCEEEEEC--CeEEEEECCCC------eeeEEee-------cCCCCEEEEEEecC---C
Q 008041 152 LGKFRASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDH------KKMQKFS-------GHPGAVRFMTFSDN---G 211 (579)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p--~g~~l~~~~--~~i~vwd~~~~------~~~~~~~-------~h~~~v~~l~~s~~---~ 211 (579)
..++......|+.+.|.| -|-.+|+++ |.++||+.-.. ....++. .+..+..|+.|+|. .
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 345666677999999999 466788877 99999976543 2222222 46678889999874 3
Q ss_pred CEEEEEecCC-----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 212 KYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 212 ~~l~s~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
.+|+.++ .+ +.++||........ ...+..+..+...+..++|.+..- ..-+.||+++.|| |+||++.....
T Consensus 185 p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r~y~~lAvA~kDg-v~I~~v~~~~s 260 (361)
T KOG2445|consen 185 PLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-RSYHLLAVATKDG-VRIFKVKVARS 260 (361)
T ss_pred ceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-CceeeEEEeecCc-EEEEEEeeccc
Confidence 5777776 33 37888887665422 224455667777788888873221 1236799999999 99998754321
Q ss_pred ecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeec
Q 008041 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (579)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (579)
-. .......++.- + + ........+..|..+|+++.|.--|..| .
T Consensus 261 ~i---------~~ee~~~~~~~------------~-----~---------l~v~~vs~~~~H~~~VWrv~wNmtGtiL-s 304 (361)
T KOG2445|consen 261 AI---------EEEEVLAPDLM------------T-----D---------LPVEKVSELDDHNGEVWRVRWNMTGTIL-S 304 (361)
T ss_pred hh---------hhhcccCCCCc------------c-----c---------cceEEeeeccCCCCceEEEEEeeeeeEE-e
Confidence 10 00000011100 0 1 0111222455799999999999999999 8
Q ss_pred cccceecccceee
Q 008041 367 SQSLLKSKRGRYV 379 (579)
Q Consensus 367 s~s~d~~~~~w~~ 379 (579)
|.+.||.+|+|..
T Consensus 305 StGdDG~VRLWka 317 (361)
T KOG2445|consen 305 STGDDGCVRLWKA 317 (361)
T ss_pred ecCCCceeeehhh
Confidence 9999999999976
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=2.6e-18 Score=152.32 Aligned_cols=277 Identities=12% Similarity=0.087 Sum_probs=194.6
Q ss_pred CcEEEEEECCCeEEEEEccCCe------EE----E----EecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQ------LK----W----RLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~------~~----~----~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 150 (579)
+.++++|..||.|.+||++... .+ . .-..+|.-.|.++.|-| |...|.+++-|.++++||..+-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 8899999999999999998532 11 1 11246778899999999 55678889999999999999998
Q ss_pred eeeEeecCCCCeeEEEEccCCC---EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 151 LLGKFRASTKGISCMAVSSDGK---MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~---~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
....|+ .++.|++-+++|-.. ++|+|. -.|++.|+.+|..-.++.||.+.|.++.|+|...+++..++.||.|+
T Consensus 136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 888887 467888889998443 455555 58999999999999999999999999999999998877777899999
Q ss_pred EEEcCCCccc----------cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041 226 LWRTDGVKKQ----------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 226 vwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
+||++....- ......+-..+...+..++|. .++.++++.+.|.++++|+..+|+......+...
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~ 289 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVWNMESGRNTLREFGPII 289 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEeecccCccccccccccc
Confidence 9999865210 000111122333445566666 8999999999999999999988864321111100
Q ss_pred EeeeccCCcccccccch-hhhhccccce-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008041 296 LSSSEDVNSKSQKSATA-AIFAAKLQDI-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (579)
. ..+.... .+-++..+-. ...+++.+.+ .....+.....+..|...+.+.++.||=+.. .+|+.|+.
T Consensus 290 ~---------n~~~~~~~~~~~~~s~vfv~~p~~~~lal-l~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~-~tg~~d~n 358 (397)
T KOG4283|consen 290 H---------NQTTSFAVHIQSMDSDVFVLFPNDGSLAL-LNLLEGSFVRRLSTHLKRINCAAYRPDFEQC-FTGDMNGN 358 (397)
T ss_pred c---------cccccceEEEeecccceEEEEecCCeEEE-EEccCceEEEeeecccceeeEEeecCchhhh-hccccCCc
Confidence 0 0000000 1112222111 1111222221 1122345566777898789999999999888 99999999
Q ss_pred ccceee
Q 008041 374 KRGRYV 379 (579)
Q Consensus 374 ~~~w~~ 379 (579)
+..|..
T Consensus 359 i~~w~p 364 (397)
T KOG4283|consen 359 IYMWSP 364 (397)
T ss_pred cccccc
Confidence 999965
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.2e-18 Score=160.04 Aligned_cols=205 Identities=14% Similarity=0.148 Sum_probs=158.0
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE--------------------EEecCCCCCCEEEEEEccC
Q 008041 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--------------------WRLSDCHPGGVSAISFATH 128 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--------------------~~~~~~h~~~V~~l~~~~~ 128 (579)
-|+.|..... +....++++|+|+.+..|.|||+.--..+ .....+|++.|.++.|+.+
T Consensus 177 LC~ewld~~~--~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 177 LCIEWLDHGS--KSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred hhhhhhhcCC--CCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 5777876511 11112889999999999999998632110 0012369999999999875
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE
Q 008041 129 GS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (579)
Q Consensus 129 ~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (579)
-+ .|++||.|.+|++||+.+|++..++..|.+.|.++.|+|. ..++++|+ +++.+.|++........-...+.|-.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 54 5899999999999999999999999999999999999995 56777787 99999999953322222224578999
Q ss_pred EEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 205 l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
++|.|.....+.++..||+|+-+|++... .+++++..|...+++++++. ....++++++.|+.+++|++..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEeecC
Confidence 99999776555555589999999999875 25788888888899988872 3457899999999999998653
No 153
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.5e-18 Score=166.92 Aligned_cols=122 Identities=21% Similarity=0.397 Sum_probs=94.2
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++..|.++ .||| +..+||+|+.|..|+||.+-.|-.. .+.. +.+.-++....+.|+.+.+..
T Consensus 78 H~d~VtDl--~FspF~D~LLAT~S~D~~VKiW~lp~g~~q-~LSa-----------pe~~~g~~~~~vE~l~fHpTa--- 140 (1012)
T KOG1445|consen 78 HGDQVTDL--GFSPFADELLATCSRDEPVKIWKLPRGHSQ-KLSA-----------PEIDVGGGNVIVECLRFHPTA--- 140 (1012)
T ss_pred ccceeecc--CccccchhhhhcccCCCeeEEEecCCCccc-ccCC-----------cceeecCCceEEEEeecccCc---
Confidence 34567666 8999 4568999999999999998744322 1111 111224556667777777763
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
.-|+..+..|.++|||+.+++....+ .+|.+.|.+..|+.||..+++++.|+.|+|||.+
T Consensus 141 ------Dgil~s~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 141 ------DGILASGAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred ------CceEEeccCceEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence 34777788899999999999988666 6899999999999999999999999999999976
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.2e-19 Score=184.22 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=181.5
Q ss_pred EEEEccCCCE----EEEEeCCCcEEEEECCCC------eEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 10 LTSFSPALDY----FAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 10 ~~~fspdg~~----lasg~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++|.+.|.. +|.|..||.|.+||...- ..+.++..|.+.|..+-|++. .
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------------q-- 128 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------------Q-- 128 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------------C--
Confidence 3488887765 888889999999998652 133444555555554444443 2
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
++++++|..+|+|.|||+..-+..... ...-.+.|.+++|+..-.+ |++++.+|++.|||++..+.+-.+..
T Consensus 129 ------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 129 ------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred ------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 779999999999999999876554333 2234578999999885544 88899999999999998888877776
Q ss_pred CCC--CeeEEEEccCCC-EEEEEC-----CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEE
Q 008041 158 STK--GISCMAVSSDGK-MLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW 227 (579)
Q Consensus 158 ~~~--~v~~l~~~p~g~-~l~~~~-----~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vw 227 (579)
+.+ .+..++|+|++. .+++++ -.|.+||++.. ..++++.+|...|.++.|++.+ +++++++ .|+.|.+|
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w 281 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW 281 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence 655 578999999763 455554 38999999853 4677889999999999999876 6777777 79999999
Q ss_pred EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
+..+++.. ..+........-+.|++ .+...+++++.||.|.||.+.++..
T Consensus 282 N~~tgEvl-----~~~p~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 282 NPNTGEVL-----GELPAQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred cCCCceEe-----eecCCCCcceeeeeecC----CCcchhhhheeccceeeeeeecCCc
Confidence 99998733 45555555555555651 3456888889999999999876653
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.2e-18 Score=152.73 Aligned_cols=278 Identities=12% Similarity=0.135 Sum_probs=184.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceee--EeecCC-C
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLG--KFRAST-K 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~-~ 160 (579)
.+.++++..+|.|++||..+++.+..+ +++...++.+.|.. ....+++|+.||+|++||++...... .+..+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 467999999999999999999887666 67888899999977 45669999999999999999765443 345555 4
Q ss_pred CeeEEEEccCCCEEEEEC------CeEEEEECCCCee-eEEe-ecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCC
Q 008041 161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~-~~~~-~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~ 231 (579)
+..|++..-.++++++|. -.+.+||++..+. +..+ ..|...|+++.|+|... .|++|+ -||.|.+||+..
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vDGLvnlfD~~~ 197 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VDGLVNLFDTKK 197 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-ccceEEeeecCC
Confidence 778888877888888887 3799999998766 5544 67999999999999765 556655 799999999987
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee-------e---cc
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-------S---ED 301 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~---~~ 301 (579)
..... .....-.....+..+.|. .+.-+.|.+-+..++..+|+++.+.............. + .+
T Consensus 198 d~EeD--aL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 198 DNEED--ALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred Ccchh--hHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 64321 112222333445555554 13335699999999999999988875433322211000 0 00
Q ss_pred CCcccccccchhhhhccccceecCCceEEEEE-e---CCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceecccc
Q 008041 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVA-Y---GLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (579)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (579)
..++..+ .. ..+++...+ .+.++.. + ++. ......+.+ |..-|..+.|...+.++ .||++|+.+.+
T Consensus 272 ~~~~~~~-~~-~~l~g~~~n-----~~~~~~~~~~~s~~~-~~~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~ 342 (376)
T KOG1188|consen 272 EHSPGDK-DT-CALAGTDSN-----KGTIFPLVDTSSGSL-LTEPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQA 342 (376)
T ss_pred cccCCCc-ce-EEEeccccC-----ceeEEEeeecccccc-cCccccccCCcHHHHHHHhhhccccee-eccCCCceEEE
Confidence 0111111 01 111111111 2222211 1 111 112223344 55567888888888999 99999999999
Q ss_pred eeee
Q 008041 377 RYVQ 380 (579)
Q Consensus 377 w~~~ 380 (579)
|.++
T Consensus 343 Wk~~ 346 (376)
T KOG1188|consen 343 WKVE 346 (376)
T ss_pred EecC
Confidence 9863
No 156
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=9.3e-18 Score=154.57 Aligned_cols=208 Identities=17% Similarity=0.267 Sum_probs=162.9
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+++|| +.++|+| +...+|+||.|.+|.||++-.+.+...+. .++.. ..|| ...+..+.|.|..
T Consensus 80 Ht~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---epvv~-------L~gH-~rrVg~V~wHPtA--- 143 (472)
T KOG0303|consen 80 HTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---EPVVE-------LYGH-QRRVGLVQWHPTA--- 143 (472)
T ss_pred ccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcc---cceEE-------Eeec-ceeEEEEeecccc---
Confidence 56888 6679999 45689999999999999987665443322 11110 1233 3355567787765
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
.+.|++++.|..|.+||+.+|+...++. |.+.|+++.|+.||.++++++.|+.|++||.++++.+..-.+|.+
T Consensus 144 -----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 144 -----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred -----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence 6789999999999999999999876763 999999999999999999999999999999999999998878877
Q ss_pred -CeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 161 -GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 161 -~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
....+.|-.+|.++.+|- .++-+||..+-+. ..++. ..+.|.---|.+|.+.++.+|-+|+.|+.|.+..
T Consensus 217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 556677888999555554 5899998776432 33443 4566777788899999988888999999999887
Q ss_pred Cc
Q 008041 232 VK 233 (579)
Q Consensus 232 ~~ 233 (579)
..
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=4.3e-17 Score=144.27 Aligned_cols=259 Identities=14% Similarity=0.113 Sum_probs=180.2
Q ss_pred CcEEEEEECC-------CeEEEEEccCCe---------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008041 86 SSLLVLGTGG-------GDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~ 149 (579)
..+++++..+ ..+.||.+.... ++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus 76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es 154 (370)
T KOG1007|consen 76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES 154 (370)
T ss_pred CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence 5556666553 127899987532 23334345667999999999999888774 888999999887
Q ss_pred ce-eeEeec-----CCCCeeEEEEcc--CCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEec
Q 008041 150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 150 ~~-~~~~~~-----~~~~v~~l~~~p--~g~~l~~~~-~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
.. +..+.. +....++-+|+| +|+.+++.+ +++..||+++.++...+ ..|...|..+.|+|+.+++++++.
T Consensus 155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence 65 333322 345678889998 899999888 89999999998776555 578889999999999886555555
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
+||.|++||.+..+. .+..+..+...+-++.|++ ...++|++|+.|..|.+|...+...-..+........
T Consensus 235 DdgyvriWD~R~tk~----pv~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese- 305 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKF----PVQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE- 305 (370)
T ss_pred CCccEEEEeccCCCc----cccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccccccccccc-
Confidence 899999999998764 3566666776777777761 3467899999999999998654321111100000000
Q ss_pred ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.++.. +... .+ . .....++++..|...|.+++||.-..++.+|-|.||.+-+-++
T Consensus 306 ----~e~~d---------seer-~k------p-----L~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 306 ----SEDED---------SEER-VK------P-----LQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ----Ccchh---------hHHh-cc------c-----ccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 00000 0000 00 0 1112445777899999999999999999899999999877766
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.5e-18 Score=180.20 Aligned_cols=245 Identities=16% Similarity=0.164 Sum_probs=175.9
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC---CeE--EEEecCCCCCCEEEEEEccCCC-EEEEEeCC
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGAD 138 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~---~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d 138 (579)
...+..+.|.+...+. ..+|+.|..||.|.+||... +.. +......|.+.|.++.|++... .+++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 4577889998875432 36799999999999999876 221 1122367999999999999655 89999999
Q ss_pred CcEEEEeCCCCceeeEee--cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCC
Q 008041 139 GMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNG 211 (579)
Q Consensus 139 ~~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~s~~~ 211 (579)
|.|.|||+..-+.-.+.. .....|.+++|+..- .+|++++ |.+.|||++..+.+-.+..|.+ .+..+.|+|++
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 999999998755444432 134589999999754 4566666 7999999999988888876654 47789999987
Q ss_pred C-EEEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 212 K-YVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 212 ~-~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
. .+++++.+|+ .|.+||++..... ...+.+|..-+-.+.|+ ..|.+++++++.|++|.+||.++++.+.
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP----~k~~~~H~~GilslsWc----~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSP----LKILEGHQRGILSLSWC----PQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCc----hhhhcccccceeeeccC----CCCchhhhcccCCCCeeEecCCCceEee
Confidence 4 4555553343 6999999886532 23344555545555565 1455999999999999999999999998
Q ss_pred ccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
.+.. ...++....|++..-. .+++++++|.+.++
T Consensus 291 ~~p~-~~nW~fdv~w~pr~P~---~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 291 ELPA-QGNWCFDVQWCPRNPS---VMAAASFDGKISIY 324 (1049)
T ss_pred ecCC-CCcceeeeeecCCCcc---hhhhheeccceeee
Confidence 7765 2233333334444332 78888998865443
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.9e-17 Score=148.45 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=149.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+.+-...++.|+++++.|..|.+|+++ |+.+..+............+|+ +.+
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF 242 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF 242 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence 444666778999999999999999998 8888777654444443444444 889
Q ss_pred EEEEECCCeEEEEEccC---CeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC----C---ceee
Q 008041 89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----G---SLLG 153 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~---~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~----~---~~~~ 153 (579)
++++.-.-+|++|.+-- |.. +.. ++||.+.|..++|+++...+++.+.||+.++||..- + +.++
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999999853 221 122 379999999999999999999999999999999752 1 2222
Q ss_pred Ee----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 154 ~~----~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
++ ....+....++.+|+|+.|+.+. ..+++|..++|+...++ ..|...|.+|+|+++|++++++| |+.+++.
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~ 399 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI 399 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence 22 11233445899999999999998 68999999999877766 46899999999999999999985 8999988
Q ss_pred E
Q 008041 228 R 228 (579)
Q Consensus 228 d 228 (579)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=7.4e-18 Score=159.38 Aligned_cols=214 Identities=14% Similarity=0.166 Sum_probs=169.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
|++......|+++|+..+.|+|||++...+.+.+++|...+..+.|... ..+|
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------------------Deyi 136 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------------------DEYI 136 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------------------ccee
Confidence 3344455589999999999999999977777778888777776666655 7889
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
++++..|+|.|..+.++.....+..+....|.-+.|+|..+. |.+++.+|.|.+||+....++.. ...|..+...|+|
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF 216 (673)
T ss_pred EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence 999999999999999988765554444556779999997776 67789999999999987766665 4568889999999
Q ss_pred ccCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 168 SSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+|... +|++.+ ..|.+||.+..+....+. ...|.+.++|+++|.+|++|. ..|.|..||++..+.. +....
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P----v~v~s 290 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP----VAVRS 290 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC----ceEee
Confidence 99665 455555 799999999887776665 457889999999999999887 5899999999987643 33444
Q ss_pred cCceeEEeEEec
Q 008041 245 HPAVFMDCRCID 256 (579)
Q Consensus 245 ~~~~~~~~~~~~ 256 (579)
.+...+.+++|.
T Consensus 291 ah~~sVt~vafq 302 (673)
T KOG4378|consen 291 AHDASVTRVAFQ 302 (673)
T ss_pred ecccceeEEEee
Confidence 555557777775
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=4.1e-17 Score=154.43 Aligned_cols=287 Identities=13% Similarity=0.155 Sum_probs=196.1
Q ss_pred CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe--EEEEEcc
Q 008041 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVS 104 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~ 104 (579)
..+++||.........+..+.. ...+..+.|.. .+.+++++..|. |++|.-.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKD 65 (673)
T ss_pred CceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEeccc
Confidence 3699999876655444432222 11245566765 344666666655 7777644
Q ss_pred CC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--Ce
Q 008041 105 AG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQ 180 (579)
Q Consensus 105 ~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~ 180 (579)
.. ++. .+.....+.-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++-...+||+++ |.
T Consensus 66 g~~~~Vp-~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 66 GKTPEVP-RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred CCCCccc-eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc
Confidence 32 221 11111122344555555568999999999999999997777888999999999999999999999998 89
Q ss_pred EEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCc
Q 008041 181 LKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG 259 (579)
Q Consensus 181 i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (579)
|.|..+.++..-.+|... ...|+-+.|+|..+++++..+++|.|.+||+....+. .. ....|......++|++
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~-~~~~HsAP~~gicfsp-- 218 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FH-ASEAHSAPCRGICFSP-- 218 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cc-hhhhccCCcCcceecC--
Confidence 999999999888788644 3456689999999988777778999999999887643 21 2234455556777772
Q ss_pred ccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC
Q 008041 260 VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK 339 (579)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~ 339 (579)
.+...|++.+.|..|.+||....+....+.-.. ..... .|++++. ++++|+..|.++.|| =....
T Consensus 219 --sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstv-af~~~G~----~L~aG~s~G~~i~YD-------~R~~k 283 (673)
T KOG4378|consen 219 --SNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTV-AFSECGT----YLCAGNSKGELIAYD-------MRSTK 283 (673)
T ss_pred --CccceEEEecccceEEEeecccccccceeeecC-Cccee-eecCCce----EEEeecCCceEEEEe-------cccCC
Confidence 245678888999999999987554332211110 01111 2566766 788888866444332 13344
Q ss_pred ceeEEEecCCCCcEEEeecCCc
Q 008041 340 PSFQKILVNSGEDINLNCSQDG 361 (579)
Q Consensus 340 ~~~~~~~~h~~~v~~~~~s~dg 361 (579)
........|...|.+++|-|--
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEeeecccceeEEEeeecc
Confidence 5556777899999999998875
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=151.85 Aligned_cols=205 Identities=13% Similarity=0.081 Sum_probs=154.4
Q ss_pred CCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCC----------------CceeeEeecCCCCeeEEEEccCCC-EEE
Q 008041 115 CHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLT----------------GSLLGKFRASTKGISCMAVSSDGK-MLA 175 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~g~-~l~ 175 (579)
+|.+.++-+...+-+ .+.++-+..|.|++||+.. .+++.++.+|...=+.++|||--. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 466777777776654 4466667899999999852 357788899998889999999322 466
Q ss_pred EEC--CeEEEEECCCCeee---EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeE
Q 008041 176 TAA--GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (579)
Q Consensus 176 ~~~--~~i~vwd~~~~~~~---~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (579)
+|. +.|++|...++.-. ..|.+|+..|-.++|||..+-++++|+-|++|+|||++.+.+.. ++... .+...+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~k-Ah~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTK-AHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEee-ccCCce
Confidence 776 89999999887542 34678999999999999876544444479999999999986543 55553 444477
Q ss_pred EeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEE
Q 008041 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 330 (579)
.++.|+ .+-.+|++|+.||+++|||+++.+.- + +
T Consensus 306 NVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~~--------------------~----p----------------- 339 (440)
T KOG0302|consen 306 NVISWN-----RREPLLASGGDDGTLSIWDLRQFKSG--------------------Q----P----------------- 339 (440)
T ss_pred eeEEcc-----CCcceeeecCCCceEEEEEhhhccCC--------------------C----c-----------------
Confidence 888887 55569999999999999998644310 0 0
Q ss_pred EEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
...++.|..+|+++.|+|...-..+.++.|..+.+|++
T Consensus 340 -----------VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 340 -----------VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred -----------ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 11466899999999999865544366777999999998
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=3e-17 Score=160.05 Aligned_cols=194 Identities=14% Similarity=0.231 Sum_probs=141.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEE-----EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLK-----WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAS 158 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~ 158 (579)
..+|+++..+|.|.++|....... ......|...|.++.|.|....|++++.|.++++||+.+++++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 678999999999999998764332 122357999999999999556699999999999999999988887 8999
Q ss_pred CCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee---------------------------eEEeecCCCCEEE---E
Q 008041 159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK---------------------------MQKFSGHPGAVRF---M 205 (579)
Q Consensus 159 ~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~---------------------------~~~~~~h~~~v~~---l 205 (579)
.+.|.+++|.|... .|++|+ |.|.|||++.... +.....|...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 99999999999765 566666 8999999974320 1112233444555 5
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCCcccc---ceeeeeee-cCc--eeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQS---ASCVLAME-HPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~---~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (579)
.+..|...|+++|..|+.|+|||++.....- ........ +.. .-+.++..+ ..|.+|++.+.|+.|+.|
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD-----ssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD-----SSGTYLFASCTDNSIYFY 298 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec-----CCCCeEEEEecCCcEEEE
Confidence 5567888999998679999999999865320 00111111 111 222333333 567899888889999999
Q ss_pred EcCCc
Q 008041 280 YGQNI 284 (579)
Q Consensus 280 d~~~~ 284 (579)
|+.+.
T Consensus 299 nm~s~ 303 (720)
T KOG0321|consen 299 NMRSL 303 (720)
T ss_pred ecccc
Confidence 97654
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=146.01 Aligned_cols=311 Identities=12% Similarity=0.080 Sum_probs=203.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+-|+++ .||.++++||+|+.|..++||++...-...+-+ ++ .+...|....+-|+.|...
T Consensus 56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~K----PI-------~~~~~~H~SNIF~L~F~~~------ 116 (609)
T KOG4227|consen 56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPK----PI-------GVMEHPHRSNIFSLEFDLE------ 116 (609)
T ss_pred cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCC----Cc-------eeccCccccceEEEEEccC------
Confidence 4667666 999999999999999999999986432111100 00 0011111234556666553
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeE--eecC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGK--FRAS 158 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~--~~~~ 158 (579)
+..+++|..+|+|...|+.+.+.+..+.. ...+.|+.+..+|-.+.|++.+.++.|.+||.+... .... ....
T Consensus 117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 67799999999999999999988765531 123489999999999999999999999999998654 2222 2223
Q ss_pred CCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCee-eEE------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 159 TKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKK-MQK------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~-l~~~~--~~i~vwd~~~~~~-~~~------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
......+-|+|.... |++.+ +-+-+||.+..+. +.. ++.......+..|+|+|..|++-- ....-.+||
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D 272 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFD 272 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEee
Confidence 457888999997664 44555 7899999886532 211 121122336789999999888764 344556678
Q ss_pred cCCCccccceeeeeeecCc------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041 229 TDGVKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
+.+... .++...|.. ..+...+| .+...+++|+.+=.|++|.+.....-..+.
T Consensus 273 ~~S~R~----~V~k~D~N~~GY~N~~T~KS~~F------~~D~~v~tGSD~~~i~~WklP~~~ds~G~~----------- 331 (609)
T KOG4227|consen 273 FISQRC----FVLKSDHNPNGYCNIKTIKSMTF------IDDYTVATGSDHWGIHIWKLPRANDSYGFT----------- 331 (609)
T ss_pred eecccc----eeEeccCCCCcceeeeeeeeeee------ecceeeeccCcccceEEEecCCCccccCcc-----------
Confidence 777543 245555433 12334455 355669999999999999865432211110
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
..|.... ....-+ .+...+-.+.||..-+.++.|+|-..+| +|.+-.+.+|+|.-
T Consensus 332 ------------~IG~~~~----~~~~~~-----~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 332 ------------QIGHDEE----EMPSEI-----FIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKLWSD 386 (609)
T ss_pred ------------ccCcchh----hCchhh-----eecceeEEEecccccccceeecCCcceE-eccchhhheecccc
Confidence 0000000 000000 0112334677999999999999999999 88888999999964
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=1.1e-16 Score=148.39 Aligned_cols=255 Identities=14% Similarity=0.128 Sum_probs=162.5
Q ss_pred cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--------C--------CceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------T--------GSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 113 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
+..|...|+++.|+|+|..+++|+.+|.|.+|-.. + ....+.+.+|...|..++|+|++.++++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 35799999999999999999999999999999755 2 2234456788899999999999999999
Q ss_pred EC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---------------e
Q 008041 177 AA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---------------C 239 (579)
Q Consensus 177 ~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~---------------~ 239 (579)
++ +.+++||+..|+.+..+.+|...+..++|.|-++++++-+ .|+..+.+++...+..... .
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 98 8999999999999999999999999999999999999987 5887777766554322100 0
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEc----CC-----eEEEEEcCCcee-e---cccCCeeEEeeeccCC---
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TG-----VCYIWYGQNIEE-L---RNTKATKILSSSEDVN--- 303 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg-----~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~--- 303 (579)
...+-|..... .+|....++|+|..+++... .| ..++|+-...+. . ...+.....+.+.-++
T Consensus 220 s~rLfhDeTlk--sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 220 STRLFHDETLK--SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred eeeeeecCchh--hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence 01111111111 12223345599999988743 33 335565332211 1 1111111111111000
Q ss_pred cccccc------cch-hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccc
Q 008041 304 SKSQKS------ATA-AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (579)
Q Consensus 304 ~~~~~~------~~~-~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (579)
.+.... +-. ..+.++. ..+.+.++....+.+-....|...++.++|++||..| +-.|.|+-..+
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt~--------~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l-~vSS~DGyCS~ 368 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIATK--------NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVL-LVSSTDGFCSL 368 (434)
T ss_pred ccccccccccccccceEEEEeec--------ceEEEeccccccceEEEeeeeeeeecceeecCCCcEE-EEeccCCceEE
Confidence 000000 000 1111111 1223333344445555555799999999999999999 66667876644
Q ss_pred eee
Q 008041 377 RYV 379 (579)
Q Consensus 377 w~~ 379 (579)
-.+
T Consensus 369 vtf 371 (434)
T KOG1009|consen 369 VTF 371 (434)
T ss_pred EEE
Confidence 433
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=9e-15 Score=150.00 Aligned_cols=323 Identities=20% Similarity=0.287 Sum_probs=216.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
...| .++.|.+++..++.++.|+.+.+|+...+. ....+..... .....+.+...+
T Consensus 65 ~~~i--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---- 121 (466)
T COG2319 65 EDSI--TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALSSPD---- 121 (466)
T ss_pred cceE--EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEECCC----
Confidence 3456 555999999999999999999999998886 5555543221 111112221000
Q ss_pred cccCCc-EEEEEEC-CCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec
Q 008041 82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 82 ~~~~~~-~l~~~~~-~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~ 157 (579)
.. .++..+. ++.+.+|+... ......+ ..|...|.++.|+|++..+++++. |+.+++|++..+..+..+.+
T Consensus 122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 22 3444344 88999999998 5554444 679999999999999998888885 99999999998889999999
Q ss_pred CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
|...+.+++|+|++. .+++++ +.|++||...+..+. .+.+|.... ...|+|++.++++++ .|+.+++|+.....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence 999999999999998 555534 899999999888887 688888775 448999998887666 79999999998776
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC--CeeEEeeeccCCcccccccc
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (579)
.. ......+...+....+. |++..+++++.|+.+.+|+..+........ .....+.... +.++..
T Consensus 275 ~~----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 341 (466)
T COG2319 275 SL----LRTLSGHSSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS--- 341 (466)
T ss_pred cE----EEEEecCCccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence 41 11222335555666776 888888889889999999988776554332 1111111111 111101
Q ss_pred hhhhhc-cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecc-ccceecccceeee
Q 008041 312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQ 380 (579)
Q Consensus 312 ~~i~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s-~s~d~~~~~w~~~ 380 (579)
.+..+ .. ++.+.. +.............+. .+..+.+++ .... .+ ++.++.+.+|+..
T Consensus 342 -~~~~~~~~-------d~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 342 -LLVSGGSD-------DGTIRL-WDLRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLS 400 (466)
T ss_pred -EEEEeecC-------CCcEEe-eecCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEecc
Confidence 22222 22 222222 2211121121222222 278888888 5434 44 6788999999874
No 167
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.9e-15 Score=138.73 Aligned_cols=234 Identities=14% Similarity=0.161 Sum_probs=172.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
....|+.|+..|..|+.|| .++|+................+....|+ ..+
T Consensus 9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS-----------------------------SSL 58 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS-----------------------------SSL 58 (391)
T ss_pred eeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc-----------------------------cce
Confidence 3447999999999999998 4888776443311111111111111111 455
Q ss_pred EEEEECCCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCCee
Q 008041 89 LVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKGIS 163 (579)
Q Consensus 89 l~~~~~~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~ 163 (579)
+++.+.+.. +++++.+.+..++.+. ...+|.++.++. +.++++-.+ .|+|||+++-+.+.++.. +..++.
T Consensus 59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 59 VAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred eEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 666665433 9999999998887774 456799999954 467666544 499999999998887654 444677
Q ss_pred EEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
++++++.+.+++.-+ |.|.+||+.+-+.+.++..|.+++.+++|+++|.+|++++.....|+|+.+..+++. .
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl---~ 210 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL---Y 210 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe---e
Confidence 777777788988765 899999999999999999999999999999999999999843335899999998754 2
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
.+.-+.....+..++|+ |++++|++.+..++|++|.++...
T Consensus 211 eFRRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence 23333334455667777 999999999999999999987654
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.2e-15 Score=154.83 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=174.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc----ccccceEEeeecccccccc----
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL----SVDYTCMKWLSVDRKKKRK---- 83 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~w~~~~~~~~~~---- 83 (579)
.||+|+++++.+. +..|+||...+|.++..+.+|..++....+.+....... ........|.-.++...+-
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~ 101 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNN 101 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecC
Confidence 6999999988777 458999999999999999999888887777655211000 1122223333211110000
Q ss_pred -----------------------------------c--------------------------------CCcEEEEEECCC
Q 008041 84 -----------------------------------L--------------------------------GSSLLVLGTGGG 96 (579)
Q Consensus 84 -----------------------------------~--------------------------------~~~~l~~~~~~g 96 (579)
. +..-+.....+.
T Consensus 102 ~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~ 181 (792)
T KOG1963|consen 102 LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMC 181 (792)
T ss_pred CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEee
Confidence 0 000011111222
Q ss_pred eEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--C--ceeeEeecCCCCeeEEEEcc
Q 008041 97 DVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--G--SLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 97 ~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--~--~~~~~~~~~~~~v~~l~~~p 169 (579)
.+.+|+..++.. .......|...+++.++||++++++++..||+|.+|.--. + .....++-|...|++++|++
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~ 261 (792)
T KOG1963|consen 182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS 261 (792)
T ss_pred eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec
Confidence 355555554331 1111235777889999999999999999999999996322 1 23345677888999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee----
Q 008041 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM---- 243 (579)
Q Consensus 170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~---- 243 (579)
+|.+|++|+ +.+.+|.+.+++ ..-++.-.++|..+.++||+.+..... .|+.|.+-...+..... .+..+
T Consensus 262 ~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~~~ 337 (792)
T KOG1963|consen 262 DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKPPT 337 (792)
T ss_pred CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccCCC
Confidence 999999999 899999999987 344567789999999999999877776 79999998875543221 01011
Q ss_pred ----ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 244 ----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.........+.++ |..+.++-.+..|+|.+||+.+.+.+
T Consensus 338 ~~~k~~~~~l~t~~~id-----pr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSID-----PRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred ccccccccccceeEEEc-----CCCCceeecCCCceEEEEecccccee
Confidence 0122334445555 65566666777788888887665554
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.1e-17 Score=157.99 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=180.2
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCC--------CeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK--------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
-||++ +|.|....|++|+.||+|++|+++. -+.+.+|.+|.+++.++++...
T Consensus 296 ~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------------ 355 (577)
T KOG0642|consen 296 CIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------------ 355 (577)
T ss_pred hhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC------------------
Confidence 46666 8999999999999999999999932 2467888999988888777766
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
+..+++|+.||.|+.|++..+ ..+...+.||++.|+.+++++....|++|+.||+|+.|+..
T Consensus 356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 778999999999999966532 12344557999999999999999999999999999999987
Q ss_pred CCceeeEeecCC--CCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEE
Q 008041 148 TGSLLGKFRAST--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 148 ~~~~~~~~~~~~--~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~ 215 (579)
.... .+|.... +...++++-.....+..++ +.-.+++......+..+... ...+..+.++|.+.+.+
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 6655 4444332 3456666654433333333 33344455545444444321 23467788899998888
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
++. .|+.|+++|..+++.. .....+...+++.++. |+|-+|++++.||.+.+|.+.....
T Consensus 506 ~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 506 TAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhe
Confidence 775 8999999999988744 4455666677788887 9999999999999999998765443
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=4.1e-16 Score=143.85 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=160.8
Q ss_pred cccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCCCCCEEEEEEccCC-CEE
Q 008041 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATHG-SCI 132 (579)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h~~~V~~l~~~~~~-~~l 132 (579)
.+||.. .+-.+.|.|.+ ...|++|+.|.+|.||.+..+... ...+.+|...|--+.|+|.- +.|
T Consensus 77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 346643 55678898886 778999999999999999876432 23347899999999999954 568
Q ss_pred EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEec
Q 008041 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSD 209 (579)
Q Consensus 133 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~ 209 (579)
++++.|.+|.+||+.+|+.+.++. |.+.|+++.|+.||.++++++ ..|+|||.++++.+..-.+|.+. -..+.|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999888888 999999999999999999998 89999999999999888888753 34567778
Q ss_pred CCCEEEEEec---CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCce
Q 008041 210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 210 ~~~~l~s~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 285 (579)
+|. ++++|. .++.+-+||...-... .....++..+ -+-.-+++ +|...+..++ .|+.|+.|.+.+-.
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSn-Gvl~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSN-GVLLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCC-ceEEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence 887 555543 4678999998776543 1233343333 33345555 7877776555 59999999977654
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1.7e-14 Score=147.96 Aligned_cols=322 Identities=20% Similarity=0.303 Sum_probs=216.0
Q ss_pred cccceEEEEccCCC-EEEEEeC-CCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~l~~~fspdg~-~lasg~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+..+... ++++. +++..+. |+.+.+|+... ......+..|...+..+.|++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 166 (466)
T COG2319 111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD----------------------- 166 (466)
T ss_pred ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence 45455444 88888 5555455 99999999988 7777777777666655555554
Q ss_pred cccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceee-EeecC
Q 008041 82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~-~~~~~ 158 (579)
+..++.++. ++.+++|+...+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+.... .+..|
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 456777775 999999999987776555 56999999999999998 56666899999999998888887 68888
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.... ...|+|++..+++++ +.+++|+...... +..+.+|...+.++.|+|++..+++++ .|+.+.+|+.......
T Consensus 242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL 319 (466)
T ss_pred Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence 7765 448999998888776 8999999987664 445568899999999999888888866 6788999988876533
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
. ......+.. .+..+.+. +++..++.+ ..|+.+.+|+............... ..... +.+. . .+
T Consensus 320 ~--~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~----~~ 384 (466)
T COG2319 320 S--SLTLKGHEG-PVSSLSFS-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS-FSPD-G----RV 384 (466)
T ss_pred E--EeeecccCC-ceEEEEEC-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEE-ECCC-C----CE
Confidence 1 111112333 33334334 444555555 6789999999887762222211111 11111 1111 1 11
Q ss_pred hh-ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 315 FA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 315 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.. +..++ .+.+.. ............+...+....+++++..+ ++++.+.+++.|++..
T Consensus 385 ~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 385 VSSGSTDG-------TVRLWD-LSTGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEecCCC-------ceEEEe-cccCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEeccC
Confidence 11 22222 222221 11111222222221578889999999999 7788899999998853
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=156.27 Aligned_cols=259 Identities=11% Similarity=0.081 Sum_probs=174.9
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
.+.+||+..|.....+ ++|.+.|.+++|+.||+.|++|+.|+.|.+|+-.- +-+-. ..|.+.|.|+.|+|-...+++
T Consensus 34 rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~Las 110 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLAS 110 (1081)
T ss_pred EEEEEeCCCccccccc-ccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee-eccCCeeeEeecCchHHHhhh
Confidence 3445555555444333 68999999999999999999999999999998532 11222 248899999999999999999
Q ss_pred EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041 177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (579)
Q Consensus 177 ~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (579)
++ +..-+|........ +. .....+.+.+|..||++++.|- .||+|.+-+-...... .+...+.++..+-.++|
T Consensus 111 CsLsdFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~-~nGTIsiRNk~gEek~---~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 111 CSLSDFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGM-FNGTISIRNKNGEEKV---KIERPGGSNSPIWSICW 184 (1081)
T ss_pred cchhhccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEec-cCceEEeecCCCCcce---EEeCCCCCCCCceEEEe
Confidence 99 89999987654332 11 1345688899999999999876 7999998865444322 33344455666666777
Q ss_pred cCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeC
Q 008041 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG 335 (579)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g 335 (579)
++..-......+++.....++.+|.+. |+.+...+.......|.. +.+++. +++.|+.++....+ ...|
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis-Yf~NGE----y~LiGGsdk~L~~f-----TR~G 253 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS-YFTNGE----YILLGGSDKQLSLF-----TRDG 253 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe-eccCCc----EEEEccCCCceEEE-----eecC
Confidence 633211223578888888899888764 444443222222222222 344455 77777776633222 2222
Q ss_pred CCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 336 LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
. .+.++.....+++.++..|+|+.. +-|..||++--+++.
T Consensus 254 v----rLGTvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 254 V----RLGTVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNLI 293 (1081)
T ss_pred e----EEeeccccceeEEEEEEccCCceE-EEEEccCeeehhhhH
Confidence 2 222444456689999999999999 888889999887763
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=131.09 Aligned_cols=227 Identities=13% Similarity=0.190 Sum_probs=161.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe----------EEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.+-++||.++||+.|+.+|.|-++.+.+-. .+..++.|..++..+.|..
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--------------------- 72 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--------------------- 72 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---------------------
Confidence 344789999999999999999999876421 2233344544444433332
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeE------EEEe-cCCCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRL-SDCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~-~~~h~-----~~V~~l~~~~~~~~l~s~~~d~~v~iwd~ 146 (579)
. ++..+.||.|+-|..+.... .++. ...|. -.|+++...|..+.++.++.|+.++.||+
T Consensus 73 --------~-~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 73 --------D-FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred --------h-heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 2 45555669999998765322 1111 12233 35889999998888888889999999999
Q ss_pred CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----------CCEEEEEEecCCCEE
Q 008041 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----------GAVRFMTFSDNGKYV 214 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~----------~~v~~l~~s~~~~~l 214 (579)
++|+..+++++|.+.|.++.--.....+++|+ |++++||+++++.+..+.... ..|.+++. +..++
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl 221 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL 221 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence 99999999999999999999855566777887 999999999999988774322 22445554 45688
Q ss_pred EEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
++++ ...+.+|.++..+.. +++.+..+.. . +.| +...++++++.+++.-|.+.
T Consensus 222 vCGg--Gp~lslwhLrsse~t---~vfpipa~v~--~-v~F-------~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 222 VCGG--GPKLSLWHLRSSEST---CVFPIPARVH--L-VDF-------VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EecC--CCceeEEeccCCCce---EEEeccccee--E-eee-------ecceEEEeccccceeeeeec
Confidence 8764 578999999998754 6666554433 2 333 23667888888888888653
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=7.6e-16 Score=156.07 Aligned_cols=250 Identities=12% Similarity=0.119 Sum_probs=179.9
Q ss_pred CCcccceEEEEccC-CCEEEEEeCCCcEEEEECCCCeEE--EEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .|++|+|. ..++|.|..+|+|.+||+..+... ..+.. .......+++.+.|.....
T Consensus 242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------~~~sh~~~v~~vvW~~~~~- 304 (555)
T KOG1587|consen 242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------LEVSHSEPVTAVVWLQNEH- 304 (555)
T ss_pred CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--------------ccccCCcCeEEEEEeccCC-
Confidence 4667 67799995 567788889999999999876652 11110 1122245777888887432
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-----cC------CCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCC
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-----SD------CHPGGVSAISFATH-GSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-----~~------~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~ 147 (579)
+.-+++++.||.|..|+++.-...... .. .....++++.|.+. -..|+.|+..|.|.--+-.
T Consensus 305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 345888999999999988753321110 00 12346899999984 4559999999998874432
Q ss_pred CC--------ceeeEeecCCCCeeEEEEccCCC-EEEEEC-CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041 148 TG--------SLLGKFRASTKGISCMAVSSDGK-MLATAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 148 ~~--------~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~-~~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 216 (579)
.. +....+..|.++|+++.++|=+. .+++++ .++++|... ...++..+..+...|++++|||...-++.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 21 12335566888999999999654 444444 899999988 66777778888888999999999877777
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+...||.|.+||+...... .+.+..-.......+.++ +.|+.|++|+..|++++|++..
T Consensus 459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCc
Confidence 7778999999999887654 333333336667777787 8899999999999999999853
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=9.1e-15 Score=144.82 Aligned_cols=188 Identities=18% Similarity=0.257 Sum_probs=124.1
Q ss_pred CcEEEEEE-CCCeEEEEEcc-CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cc---eeeEee
Q 008041 86 SSLLVLGT-GGGDVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GS---LLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~-~~g~i~iwd~~-~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~-~~---~~~~~~ 156 (579)
+++|++++ .++.|.+|++. ++.. .... ...+....+.|+|+|+++++++ .++.|.+|++.+ +. .+..+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 56666654 46779999997 3433 2222 2334567899999999988876 488999999864 32 222232
Q ss_pred cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE-------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~-------~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
+...+.+++++|+|+++++++ +.|.+||+.+...+. .... ......+.|+|+|++++++...++.|.+
T Consensus 124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 223567889999999997766 799999998643221 1111 2345789999999999888756899999
Q ss_pred EEcCCCccccceeeeeeec-C-----ceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCC
Q 008041 227 WRTDGVKKQSASCVLAMEH-P-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 283 (579)
|++...... ...+..+.. + ......+.++ |++++++++.. ++.|.+|+++.
T Consensus 202 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 202 WQLKDPHGE-IECVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEeCCCCC-EEEEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence 999743111 112222211 0 1111234455 99999999865 78999998754
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=142.19 Aligned_cols=190 Identities=12% Similarity=0.201 Sum_probs=144.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (579)
..+|++-..|.|++||..+|+.+.+|+++...++...|... + ....+.+|+.||.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------d-------s~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------D-------SPHGVISCSSDGT 95 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------C-------CCCeeEEeccCCe
Confidence 35888888999999999999999999988877776655432 1 1567899999999
Q ss_pred EEEEEccCCeEEEEec-CCCC-CCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCce-eeE-eecCCCCeeEEEEcc
Q 008041 98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS 169 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~-~~h~-~~V~~l~~~~~~~~l~s~~----~d~~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~~p 169 (579)
|++||++......++. .+|. .+-.+++.+.+++.+++|. .|-.|.+||++..+. +.. +..|...|+++.|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999999876554443 3344 4667777776777787775 567899999998766 444 567999999999999
Q ss_pred C-CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCc
Q 008041 170 D-GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 170 ~-g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
. -++|++|+ |-|.+||+..... +...-.|...|..+.|..++ +.+.+-+ ...+..+|++..+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS 245 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence 5 46888888 9999999976422 22223477789999999877 2355555 68889999987664
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=7e-16 Score=136.86 Aligned_cols=207 Identities=15% Similarity=0.235 Sum_probs=151.8
Q ss_pred cccceEEEEccCC-----CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 5 NIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 5 ~V~~l~~~fspdg-----~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
|++.+ -|.|+. ++||+++ | .+|+|.+.........+. ..+.. ...+...+.|+..|+..+
T Consensus 98 P~tK~--~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~--------~L~~~-kns~~~aPlTSFDWne~d-- 162 (364)
T KOG0290|consen 98 PVTKL--MWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQS--------VLNNN-KNSEFCAPLTSFDWNEVD-- 162 (364)
T ss_pred Cccce--EecCCccccCcchhhccc-C-eEEEEeccCcCCceehhh--------hhccC-cccccCCcccccccccCC--
Confidence 55444 899976 3677766 3 799999874322111110 01111 235556788999999887
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
.++|.+++-|-+..|||+.++.. +.+-+-+|...|.+++|...+. .|++++.||.|++||++.-+.-..+.
T Consensus 163 ------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 163 ------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred ------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 67899999999999999999733 3344468999999999998654 58999999999999998765433332
Q ss_pred c---CCCCeeEEEEccCC-CEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEE
Q 008041 157 A---STKGISCMAVSSDG-KMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALW 227 (579)
Q Consensus 157 ~---~~~~v~~l~~~p~g-~~l~~~~---~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vw 227 (579)
. ...+...++|++.. +++|+-. ..|.+.|++.. ..+..+.+|.+.|+.|+|.|... .+.++| +|..+-+|
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliW 315 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIW 315 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEE
Confidence 2 23478889999854 4555543 78999999964 56889999999999999999754 677776 79999999
Q ss_pred EcCCCc
Q 008041 228 RTDGVK 233 (579)
Q Consensus 228 d~~~~~ 233 (579)
|+...-
T Consensus 316 Dl~q~~ 321 (364)
T KOG0290|consen 316 DLQQMP 321 (364)
T ss_pred eccccc
Confidence 998754
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5.7e-16 Score=150.07 Aligned_cols=225 Identities=12% Similarity=0.131 Sum_probs=170.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc--------------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-------------- 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~-------------- 150 (579)
+..|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+.. ++.+.....+.+.+..-|.
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~ 489 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA 489 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence 8899999999999999999999998874 5578999999997765 3333333334444432110
Q ss_pred -----------------------eeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCE
Q 008041 151 -----------------------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAV 202 (579)
Q Consensus 151 -----------------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v 202 (579)
-++..-.|...|..+.|+..|.+|++.. ..|.|+++...+...-|....+.|
T Consensus 490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v 569 (733)
T KOG0650|consen 490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV 569 (733)
T ss_pred CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence 0122224677899999999999999976 489999998777666676667889
Q ss_pred EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 203 ~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
.++.|+|...+|++++ .+.|++||+...... ..+......++.+... |.|..|+.++.|+.+..||++
T Consensus 570 q~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv-----KkL~tg~kwiS~msih-----p~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV-----KKLLTGSKWISSMSIH-----PNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eEEEecCCCceEEEEe--ccceEEEehhHHHHH-----HHHhcCCeeeeeeeec-----CCCCeEEEecCCCeeEEEEcc
Confidence 9999999999999875 578999999886432 3444556667777776 999999999999999999975
Q ss_pred CceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc
Q 008041 283 NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (579)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (579)
-... . .+++..|...+.+++|++.=.
T Consensus 638 lssk-------------------P-----------------------------------yk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 638 LSSK-------------------P-----------------------------------YKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred cCcc-------------------h-----------------------------------hHHhhhhhhhhhhhhhccccc
Confidence 3211 0 114556888888899988888
Q ss_pred eeeccccceecccceee
Q 008041 363 LLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 363 ~l~~s~s~d~~~~~w~~ 379 (579)
++ +|||.|+++.+...
T Consensus 664 Lf-as~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 664 LF-ASGSDDGTVIVFHG 679 (733)
T ss_pred ee-eeecCCCcEEEEee
Confidence 88 99999899877753
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=6.1e-16 Score=147.90 Aligned_cols=176 Identities=16% Similarity=0.307 Sum_probs=144.4
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+...++++++||.+.+.+-. ++.. +...+|.+.|.+-.|+|||.-+++++.||.|++|. ++|-...++.....+|+|
T Consensus 74 ~~d~~~i~s~DGkf~il~k~-~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS-ARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred CcceEEEEcCCceEEEeccc-chhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 47789999999999988743 3332 33478999999999999999999999999999999 677766666666779999
Q ss_pred EEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041 165 MAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 165 l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
++|.|+.+.++.+. +.+.+=.+.....+-....|.+-|.++.|++.+..++++| +|-..++||-.... .+..
T Consensus 151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~------Lf~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN------LFTS 223 (737)
T ss_pred EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc------cccC
Confidence 99999887666665 8888888887777778899999999999999999999988 89999999977653 4566
Q ss_pred ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008041 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (579)
..++..+..++|. |+ ..++.++. ++++
T Consensus 224 ~~~ey~ITSva~n-----pd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 224 AAEEYAITSVAFN-----PE-KDYLLWSY-NTAR 250 (737)
T ss_pred Chhccceeeeeec-----cc-cceeeeee-eeee
Confidence 6778889999998 88 55566654 3444
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=2.9e-15 Score=132.84 Aligned_cols=200 Identities=14% Similarity=0.210 Sum_probs=151.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
-|+.|.|++..+|+-. |..|.+|+++++.. +.++....... .....+.-.|.|.. ..
T Consensus 127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------~~~~ftsg~WspHH--------dg 184 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------MRHSFTSGAWSPHH--------DG 184 (370)
T ss_pred eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-------------ccceecccccCCCC--------cc
Confidence 4559999999998877 88999999998876 44443222111 11234455676643 22
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCC-CceeeEeecCCCCeeEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLT-GSLLGKFRASTKGISCM 165 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v~~l 165 (579)
.-+..+.++++..||+++.+....+..+|...|..+.|+|+.++ |++|+.||.|++||.+. ..++..+.+|...|.++
T Consensus 185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 34666788999999999998888888899999999999998876 88999999999999885 46788899999999999
Q ss_pred EEccCC-CEEEEEC--CeEEEEECCCC-----------------------------eeeEEeecCCCCEEEEEEecCCCE
Q 008041 166 AVSSDG-KMLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 166 ~~~p~g-~~l~~~~--~~i~vwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~s~~~~~ 213 (579)
.|+|.- +++++|+ ..|.+|...+- ..+.++..|...|.+++|+.-..+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 999954 4555665 57777754211 124467789999999999988887
Q ss_pred EEEEecCCCeEEEEEcC
Q 008041 214 VLSSAVGERYIALWRTD 230 (579)
Q Consensus 214 l~s~~~~d~~i~vwd~~ 230 (579)
++++-+.||.+.|=.+.
T Consensus 345 iFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeccCceEEeecCC
Confidence 76666689998875544
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.68 E-value=4.3e-14 Score=139.98 Aligned_cols=238 Identities=10% Similarity=0.052 Sum_probs=150.1
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEECC-CCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg~~lasg~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++++||+++|++++ .++.|.+|++. ++.... ...... ......+.+.+. ++
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~-~~~~~~----------------~~~p~~i~~~~~---------g~ 92 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF-AAESPL----------------PGSPTHISTDHQ---------GR 92 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEE-eeeecC----------------CCCceEEEECCC---------CC
Confidence 348999999987765 47889999986 344321 110000 001122333332 55
Q ss_pred EEEEEE-CCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-----Eee
Q 008041 88 LLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----KFR 156 (579)
Q Consensus 88 ~l~~~~-~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~-----~~~ 156 (579)
.+++++ .++.|.+|++.+.. .+..+ .+.....+++|+|+|+++++++ .++.|.+||+.+...+. ...
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 666655 47889999997432 22111 2334567889999999986555 56999999997633221 111
Q ss_pred -cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC--C--eeeEEeecCC------CCEEEEEEecCCCEEEEEecCCC
Q 008041 157 -ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD--H--KKMQKFSGHP------GAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 157 -~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~--~--~~~~~~~~h~------~~v~~l~~s~~~~~l~s~~~~d~ 222 (579)
........++|+|+|++++++. +.|.+|+++. + +.+.++..+. .....+.|+|++++++++...++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 1233567899999999998876 8999999973 3 2333333221 12346889999999998865688
Q ss_pred eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC
Q 008041 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 282 (579)
.|.+|++...... ...+..... ......+.++ |+|++|++++. +++|.+|+++
T Consensus 251 ~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCe-EEEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence 9999999654321 011111111 1122344565 99999998876 8999999764
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=1e-14 Score=152.39 Aligned_cols=255 Identities=14% Similarity=0.165 Sum_probs=160.5
Q ss_pred CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.|..+ +.++ ++.+|++||.||+|+|||.+.-.... ...-....|++. +..+.++....
T Consensus 1048 s~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~~------~sr~~~vt~~~------ 1108 (1431)
T KOG1240|consen 1048 SSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSPE------GSRVEKVTMCG------ 1108 (1431)
T ss_pred cccccce--eecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEecc------CCceEEEEecc------
Confidence 4556444 5555 55999999999999999986321100 000011122211 12222222222
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCC-CCCEEEE-EEcc-CCC-EEEEEeCCCcEEEEeCCCCce
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCH-PGGVSAI-SFAT-HGS-CIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h-~~~V~~l-~~~~-~~~-~l~s~~~d~~v~iwd~~~~~~ 151 (579)
.++.+++++.||.|.+.++...+.. .+....+ .+.+.++ +|.. .+. .++.+...+.|..||++....
T Consensus 1109 ---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1109 ---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred ---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 2778999999999999998762211 1111222 2334333 3333 233 677888889999999987765
Q ss_pred eeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecC---CCEEEEEec-CCC
Q 008041 152 LGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-GER 222 (579)
Q Consensus 152 ~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~---~~~l~s~~~-~d~ 222 (579)
....+. ..+.|++++.+|.+.++++|. |.+.+||++=+.++.... ++..+++.+..+|- ....+++++ ..+
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 555443 346899999999999999998 999999999888776653 45578888877764 346666665 578
Q ss_pred eEEEEEcCCCccccceeeeeee---------cCc--------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 223 YIALWRTDGVKKQSASCVLAME---------HPA--------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
.|.+|++.++.... ++-.. .+. .......+. ..+.++.+|+.|..|+.||....+
T Consensus 1266 evs~wn~~~g~~~~---vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQT---VLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceeeeecccCcceE---EEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCcc
Confidence 89999999885331 11111 000 011111221 345788999999999999977654
Q ss_pred ee
Q 008041 286 EL 287 (579)
Q Consensus 286 ~~ 287 (579)
..
T Consensus 1338 ~s 1339 (1431)
T KOG1240|consen 1338 IS 1339 (1431)
T ss_pred cc
Confidence 43
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.2e-14 Score=124.22 Aligned_cols=242 Identities=16% Similarity=0.219 Sum_probs=156.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccc-cccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS-VDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~ 80 (579)
+.+||+.+ +|. ..+|.+|+ ||.|+=|.+.........+.. .. .-++...+... ..+..+ |..+.
T Consensus 61 hdgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l----we--~~~P~~~~~~evPeINam-~ldP~--- 125 (325)
T KOG0649|consen 61 HDGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL----WE--VKIPMQVDAVEVPEINAM-WLDPS--- 125 (325)
T ss_pred cCCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhh----hh--hcCccccCcccCCcccee-EeccC---
Confidence 56888555 887 45777777 699999998754331111100 00 00000001111 112222 22222
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~- 159 (579)
.+.++++..|+.++-||+.+|+....+ ++|++-|.++.-......+++|+.||++++||++++++++.+...+
T Consensus 126 -----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~ 199 (325)
T KOG0649|consen 126 -----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN 199 (325)
T ss_pred -----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC
Confidence 444666669999999999999988666 8999999999985556679999999999999999999988865422
Q ss_pred ---------CCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 160 ---------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 160 ---------~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
..|.+++.+ ...+++|+ ..+.+|.+++.++...|+ -..++..+.|..| .++++| ..+.|.-|.+
T Consensus 200 ~~~lRp~~g~wigala~~--edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l 273 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAVN--EDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTL 273 (325)
T ss_pred hhhcCcccCceeEEEecc--CceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeee
Confidence 256666654 56899988 589999999998888876 5677888888754 566666 5778999988
Q ss_pred CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
...-. ......++.- ....++ .+| -++|-.++..++++|+.
T Consensus 274 ~Gvl~----a~ip~~s~~c--~s~s~~---~~p-~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 274 NGVLQ----ANIPVESTAC--YSASWQ---TSP-IKFISIAGFSNKLHILK 314 (325)
T ss_pred ccEEE----EeccCCccce--eeeccc---CCc-eEEEEecccceeeeeee
Confidence 76321 1112222221 112222 013 35566667777888773
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=135.34 Aligned_cols=226 Identities=13% Similarity=0.212 Sum_probs=159.7
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
.|+..++|+.+.|.-|++||..+|+....+..-..... -...-++.|.+. +..|+ ++
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------Geqlf-aG 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLF-AG 176 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEe-ec
Confidence 37888999999999999999999998877753221000 011223444443 44454 45
Q ss_pred CCCeEEEEEc-cCCeEE--EE-e---cCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 94 GGGDVLALAV-SAGQLK--WR-L---SDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 94 ~~g~i~iwd~-~~~~~~--~~-~---~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
....|++||+ +.|... .. + ..+..+-+.+++|+|-. ..++.++...++-+|.-..+.++..+.+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 5678999999 444321 11 1 12346678999999954 478899988888888877889999999999999999
Q ss_pred EEccCCCEEEEEC---CeEEEEECCC-CeeeEEeecCCC-CEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 166 AVSSDGKMLATAA---GQLKTFNCSD-HKKMQKFSGHPG-AVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 166 ~~~p~g~~l~~~~---~~i~vwd~~~-~~~~~~~~~h~~-~v~~l~~--s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
.|.++|+.|.+|. -.|..||++. +..+..+.+|.. .-..|.| .|++++|++++ .||.|++||+......
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~--- 332 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNE--- 332 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCc---
Confidence 9999999999998 5899999986 455677777765 3344555 58899999886 7999999999883321
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (579)
+.........+..+.+. |-=..+++++.
T Consensus 333 -~sv~~~~sd~vNgvsln-----P~mpilatssG 360 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLN-----PIMPILATSSG 360 (406)
T ss_pred -ccccccccccccceecC-----cccceeeeccC
Confidence 12333444455555555 65445555443
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-15 Score=142.76 Aligned_cols=195 Identities=21% Similarity=0.177 Sum_probs=154.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|++||..|++|+.||++|||++.+...+..+..|...+.++.|+++ +.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~ 200 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKF 200 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcE
Confidence 34599999999999999999999999988888888889999999999988 888
Q ss_pred EEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCC---CE--EEEEeCCCcEEEEeCCCCce-----eeEeec
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---SC--IYSAGADGMVCEIDPLTGSL-----LGKFRA 157 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~---~~--l~s~~~d~~v~iwd~~~~~~-----~~~~~~ 157 (579)
|++-+.+ ..+||+..++..+.+.. .........+.|+.|+ .+ ++....-+.|+.||+...+- .++...
T Consensus 201 lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 201 LASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred EEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 8998888 99999999997665543 3344456778888877 33 33334556777777643221 111112
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
....|++++++++|++++.|+ |.|-+++..+.+.+.-. +.|...|+.+.|+||.+++++.+ .|....+..+...
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~vd 356 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAVD 356 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEeec
Confidence 234899999999999999999 99999999988876655 57999999999999999999987 5888888877653
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=4.1e-16 Score=156.38 Aligned_cols=240 Identities=15% Similarity=0.165 Sum_probs=178.6
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.+| .|+.|...|.++++|+.|..++||...++.+.....||.+.+...+.+..
T Consensus 191 naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------------------------- 243 (1113)
T KOG0644|consen 191 NAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------------------------- 243 (1113)
T ss_pred hhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-------------------------
Confidence 457 67799999999999999999999999999999999999888876666544
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------C
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------------G 149 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--------------~ 149 (579)
+.++++++.|..|++|.+.++..+.. +.+|++.|++++|+|-. +.+.||++++||.+- +
T Consensus 244 --n~~iaaaS~D~vIrvWrl~~~~pvsv-LrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 244 --NTMIAAASNDKVIRVWRLPDGAPVSV-LRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred --hhhhhhcccCceEEEEecCCCchHHH-HhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc
Confidence 67789999999999999999998744 47899999999999954 778999999999761 0
Q ss_pred ceeeEee----------------cCCCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCC
Q 008041 150 SLLGKFR----------------ASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPG 200 (579)
Q Consensus 150 ~~~~~~~----------------~~~~~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~ 200 (579)
..+..+. .....+-+++|...+-.+++.. ..+.+|++.+|.....+.+|..
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 1111100 0011222333333333333322 3678999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
.+..+.++|-+..++-....||...|||+-.+... .++..+ +...+. ..|+ +||..++....-|.++|+.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d-~kFS-----qdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVD-GKFS-----QDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeec-cccC-----CCCceEecCCCCCceEEec
Confidence 99999999976655444448999999999988654 233333 333333 3344 8999999999999999998
Q ss_pred cCCceee
Q 008041 281 GQNIEEL 287 (579)
Q Consensus 281 ~~~~~~~ 287 (579)
...++..
T Consensus 467 ~gqs~s~ 473 (1113)
T KOG0644|consen 467 TGQSKSQ 473 (1113)
T ss_pred cCCCccc
Confidence 6555443
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=1.2e-15 Score=148.64 Aligned_cols=238 Identities=15% Similarity=0.183 Sum_probs=166.4
Q ss_pred EccCCCEEEE--EeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 13 FSPALDYFAI--CSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 13 fspdg~~las--g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
|..+..+.|. .+.-|.|-||++.. |++-.. +... -.-...++.+.|.|++ ...+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDg-------v~p~--------l~Ngt~vtDl~WdPFD--------~~rL 643 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG-------VMPG--------LFNGTLVTDLHWDPFD--------DERL 643 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcc-------cccc--------cccCceeeecccCCCC--------hHHe
Confidence 4455555553 34568899999864 222110 0000 1114467889999998 5679
Q ss_pred EEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 90 VLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
++++.||.|++|.+..+.. ....+..|...|+++.|+| -...+++++.|.+|++||+++++....+.+|.+.|
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI 723 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI 723 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence 9999999999999986543 2234568999999999999 44578999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCC-CCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCcc
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHP-GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK 234 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d----~~i~vwd~~~~~~ 234 (579)
..++|+|+|+.+++.+ |+|++|..++++. +.+-.+.. ..-..|.|.-||+++++.|. | +.|.+||.++-..
T Consensus 724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccC
Confidence 9999999999999998 9999999987643 33332221 22245788889999988874 4 4688888776542
Q ss_pred ccceeeeeeecCcee-EEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcC
Q 008041 235 QSASCVLAMEHPAVF-MDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQ 282 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 282 (579)
. .+.+..-.... .-.-.++ +|.. .+++|-.|..|+.|.+-
T Consensus 803 ~---pl~t~~lDvaps~LvP~YD-----~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 803 R---PLYTQVLDVAPSPLVPHYD-----YDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred C---cceeeeecccCcccccccc-----CCCceEEEecCCCceEEEEEec
Confidence 2 22222111111 1111222 4544 56677779999999754
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=4.5e-16 Score=150.07 Aligned_cols=246 Identities=17% Similarity=0.183 Sum_probs=166.8
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEE
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT 183 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~v 183 (579)
..|.+.|+.+.|+|....|++|+.||++++|+++. -+++.+|++|.++|.|+++.+++..+.+|+ |+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 56889999999999999999999999999999932 257889999999999999999999999999 99999
Q ss_pred EECCCC----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041 184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 184 wd~~~~----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
|++... .....+.||...|..+++|+....|++++ .||+++.|+...... +++...........+
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV 445 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence 965421 23456789999999999999988899987 699999999877653 223322222222223
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee---e---ccCCcccccccchhhhhccccceecCCc
Q 008041 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---S---EDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (579)
.+.. ....+.++...-|.-.+++.+.+..+..+........ . ..+..+.. +..+++..+..++.++
T Consensus 446 d~~s----s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 446 DRTS----SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITFTAHEDRSIRFFD 517 (577)
T ss_pred eecc----chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeEecccCCceeccc
Confidence 3320 1112223322234444445544444433322111100 0 00011111 2455555555555543
Q ss_pred eEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.........+..|...+.++++.|+|-+| +++++|+++++|.+..
T Consensus 518 --------n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 518 --------NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDV 562 (577)
T ss_pred --------ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccc
Confidence 22333334566788899999999999999 9999999999998853
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=3.4e-15 Score=130.77 Aligned_cols=229 Identities=11% Similarity=0.090 Sum_probs=161.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-----------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----------- 154 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----------- 154 (579)
+..++.|+..|.|++|++++......+...|...|+.+.--|+ ..+.+-+.|+.+.+|++..+..+..
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC 103 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC 103 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence 4558999999999999999988765554367889999999887 4677888999999999865321110
Q ss_pred ---ee---------------------------------------cCCCCeeEEEEcc-CCC-EEEEEC---CeEEEEECC
Q 008041 155 ---FR---------------------------------------ASTKGISCMAVSS-DGK-MLATAA---GQLKTFNCS 187 (579)
Q Consensus 155 ---~~---------------------------------------~~~~~v~~l~~~p-~g~-~l~~~~---~~i~vwd~~ 187 (579)
+. +..+.+.|..+.. +++ .++.++ |.+.+||+.
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S 183 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS 183 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence 00 0113444544332 233 334444 899999999
Q ss_pred CCeee----------EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-cceeeeeeecCceeEEeEEec
Q 008041 188 DHKKM----------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCID 256 (579)
Q Consensus 188 ~~~~~----------~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 256 (579)
++..+ .....|..+|.++.|.+....=+++| .+..+.+|++...... .......+.++. +..+.+.
T Consensus 184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpG--v~gvrIR 260 (323)
T KOG0322|consen 184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPG--VSGVRIR 260 (323)
T ss_pred CCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCC--ccceEEc
Confidence 97433 33357899999999987655446666 5777899988754211 111222333332 2334444
Q ss_pred CCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCC
Q 008041 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (579)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~ 336 (579)
||++.+|+++.||+|+||+.++++.+.
T Consensus 261 -----pD~KIlATAGWD~RiRVyswrtl~pLA------------------------------------------------ 287 (323)
T KOG0322|consen 261 -----PDGKILATAGWDHRIRVYSWRTLNPLA------------------------------------------------ 287 (323)
T ss_pred -----cCCcEEeecccCCcEEEEEeccCCchh------------------------------------------------
Confidence 999999999999999999988776543
Q ss_pred CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+..|...|.+++|+||...+ +++|+|..|-+|++
T Consensus 288 -------VLkyHsagvn~vAfspd~~lm-AaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 -------VLKYHSAGVNAVAFSPDCELM-AAASKDARISLWKL 322 (323)
T ss_pred -------hhhhhhcceeEEEeCCCCchh-hhccCCceEEeeec
Confidence 233688889999999998888 99999999999975
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=2.9e-13 Score=124.49 Aligned_cols=144 Identities=19% Similarity=0.349 Sum_probs=120.8
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecC--CCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
..++++-.+. |+|||+.+-+.+.++.. .+..++.++.+++.+.+++.-+ ..|.|.+||..+-+.+.++.+|++.+
T Consensus 98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l 176 (391)
T KOG2110|consen 98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL 176 (391)
T ss_pred ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence 3455555544 99999999998766643 3666788888888888887643 57899999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 163 SCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~-~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.|++|+|+|.+||+++ | .|+||.+.+|+.+.+|.... ..|.+++|+|++++|.+++ ..++|++|.+...
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV 250 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence 9999999999999999 5 67999999999999997544 4577999999999998887 6899999988654
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6.9e-14 Score=144.12 Aligned_cols=287 Identities=14% Similarity=0.162 Sum_probs=195.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.|+|=...++++...-.|+|||++.+++...|..+... ...++.+...... +..++++
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~-------D~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQ-------DDALLLT 1128 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeeccc-------chhheee
Confidence 88998888998887778999999999998877643311 2234445544433 2678999
Q ss_pred EECCCeEEEEEccCC-----eEEEEe--cCCC----CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-C
Q 008041 92 GTGGGDVLALAVSAG-----QLKWRL--SDCH----PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-T 159 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~-----~~~~~~--~~~h----~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~ 159 (579)
|+.||.|+||+-... +.+... +.++ .+.=.-+.|..+..+++++|.-..|+|||...-..+..+... .
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 999999999986433 222111 1111 111134567777777888888899999999877776665543 3
Q ss_pred CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCC--EEEEEEecCCC-EEEEEecCCCeEEEEEcC
Q 008041 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGK-YVLSSAVGERYIALWRTD 230 (579)
Q Consensus 160 ~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~---~~~~~~~h~~~--v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~ 230 (579)
..|+++.-+. .|+++++|. |.|++||.+... .+.....|... |..+.+-+.|- .|++++ .||.|++||++
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence 3677766543 468888886 999999998643 46777888877 99999988664 488887 79999999999
Q ss_pred CCccccceeeeeeec-C--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccc
Q 008041 231 GVKKQSASCVLAMEH-P--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (579)
...... ...... - +..++++... ++...+|+|+. +.|+||++.. +++..++..
T Consensus 1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n-------------- 1343 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN-------------- 1343 (1387)
T ss_pred cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecCh-hhhcccccC--------------
Confidence 853221 112211 1 2235556555 78889999988 9999999753 333322200
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+- ......+.|++|+|--.++ +.|+.|.++.++...
T Consensus 1344 ---------~~F~-------------------------~q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1344 ---------PGFM-------------------------GQRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCE 1381 (1387)
T ss_pred ---------cccc-------------------------cCcCCCcceeeecchhHhh-hhccCCceEEEeecC
Confidence 0000 0122356999999999999 889999999888663
No 192
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=2.6e-15 Score=135.40 Aligned_cols=224 Identities=14% Similarity=0.156 Sum_probs=159.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
-++|||+|+|+|+++.- ++.|=|..+-+..+.|.. -..+.-+.|...+ --.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-------------------ldki~yieW~ads--------~~il 64 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-------------------LDKIVYIEWKADS--------CHIL 64 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-------------------HHHhhheeeeccc--------eeee
Confidence 36899999999999954 788888877665544431 1134456676433 3446
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
.....++.|.+|++...+-..++. ...+++.+++|+|||+.++ +..-|-+|.+|.+.+.+... ++..+..+..++|+
T Consensus 65 C~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH 142 (447)
T ss_pred eeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC
Confidence 667788899999999998877774 4667899999999997754 55578899999998766543 33344567889999
Q ss_pred cCCCEEEEECC-----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe----EEEEEcCCCcccccee
Q 008041 169 SDGKMLATAAG-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY----IALWRTDGVKKQSASC 239 (579)
Q Consensus 169 p~g~~l~~~~~-----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~----i~vwd~~~~~~~~~~~ 239 (579)
|||++.+..+. -+.+...+....++.+.-.+-..+.+.|+|||..+++ .|.. |..|.
T Consensus 143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---wd~~Leykv~aYe----------- 208 (447)
T KOG4497|consen 143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---WDNVLEYKVYAYE----------- 208 (447)
T ss_pred CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---ecchhhheeeeee-----------
Confidence 99999999882 2333333344556666666667789999999998875 3432 22221
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
-+.-+..+.|+ |.+++|++|+.|+.+++.|--+.+.+.
T Consensus 209 ------~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 209 ------RGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred ------eccceeEEEec-----cccceEEeeccchhhhhhceeeeeehh
Confidence 11223455666 999999999999999998866665543
No 193
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=143.56 Aligned_cols=225 Identities=15% Similarity=0.212 Sum_probs=173.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+.|+.+|++|+.|+..|.|-.+|+.++.+..++..- ..+..+.|.. +..+
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------Etv~Dv~~LH----------neq~ 184 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------ETVRDVTFLH----------NEQF 184 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehh-------------------hhhhhhhhhc----------chHH
Confidence 4589999999999999999999999999998877521 1222333333 2223
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (579)
+......-++|||-..-++- .++.| .+|..+.|.|.--.|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 185 ~AVAQK~y~yvYD~~GtElH--Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTELH--CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred HHhhhhceEEEecCCCcEEe--ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 44445566899987655542 22333 5799999999888899999999999999999999999988888999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc
Q 008041 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
-+-.+-+|. |+|.+|.....+++..+-.|.++|.+|++.++|+|++++| .|+.++|||++.-.... . ....++.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql~--t-~~tp~~a 337 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQLH--T-YRTPHPA 337 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeeccccccc--e-eecCCCc
Confidence 988888887 9999999999999999999999999999999999999998 79999999999876431 1 1112332
Q ss_pred eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
..+.++ + +-+++.+....+.||.
T Consensus 338 ---~~ls~S------q-kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 ---SNLSLS------Q-KGLLALSYGDHVQIWK 360 (545)
T ss_pred ---cccccc------c-ccceeeecCCeeeeeh
Confidence 333443 3 3344555656899994
No 194
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=7.4e-13 Score=119.54 Aligned_cols=233 Identities=15% Similarity=0.185 Sum_probs=163.6
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc--cccccccccccccccccccccceEEeeecccccccccC
Q 008041 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
.+.++|+.|..-+++|..+| .+||+.+.-+....-+-.. -.+....| .
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf-----------------------------R 57 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF-----------------------------R 57 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh-----------------------------h
Confidence 36679999999999988776 7999987533221111111 11111111 1
Q ss_pred CcEEEEEEC-C------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeec
Q 008041 86 SSLLVLGTG-G------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRA 157 (579)
Q Consensus 86 ~~~l~~~~~-~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~ 157 (579)
.++++..++ + ..|.|||=....++.++ ....+|.++.+.++ .+++. ..+.|++|... +-+.++.+..
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec
Confidence 334444333 3 24999997777776665 36789999999765 45555 57789999987 3455555443
Q ss_pred C--CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEc
Q 008041 158 S--TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRT 229 (579)
Q Consensus 158 ~--~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~-i~vwd~ 229 (579)
. ..++.+++-+.+-.+||.-+ |+|+|-|+...+. -..+..|.+.|.+++.+.+|..+++++ ..|+ |+|||.
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt 211 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDT 211 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEc
Confidence 2 23455555554555666656 8999999987655 367789999999999999999999998 4665 899999
Q ss_pred CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.+++.. ..+.-+.....+.++.|+ |++.+|+++|..|+++||.++..
T Consensus 212 ~~g~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 212 EDGTLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCCcEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecC
Confidence 999865 334445556677888898 99999999999999999987654
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=137.26 Aligned_cols=282 Identities=18% Similarity=0.270 Sum_probs=193.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.+-|+.+ .|...|..|++||.|.+|.+||+..+.....|.+ ||-...+..- |.|...
T Consensus 142 ~GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~NvfQaK-FiP~s~---- 198 (559)
T KOG1334|consen 142 KGCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVFQAK-FIPFSG---- 198 (559)
T ss_pred CCcccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchhhhh-ccCCCC----
Confidence 4567556 9999999999999999999999999988776642 3322222211 333332
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCe-EE-EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee---
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQ-LK-WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR--- 156 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~-~~-~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~--- 156 (579)
..-+++++.||.|++=.+.... +. ......|.++|.-++.-|+..+ |++++.|+.+.-+|++.+.+..++.
T Consensus 199 ---d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 199 ---DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred ---CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence 4568999999999987765433 32 2333579999999999997766 9999999999999998876544432
Q ss_pred cCCC---CeeEEEEccCCC-EEEEEC--CeEEEEECCCCe------eeEEeecC------CCCEEEEEEecCCCEEEEEe
Q 008041 157 ASTK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSGH------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 157 ~~~~---~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~------~~~~~~~h------~~~v~~l~~s~~~~~l~s~~ 218 (579)
.+.. ....++.+|... .+++++ .-+++||.+.-. .+.+|-.| .-.|++++|+.++.-++++-
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence 2333 678899999776 667776 678999987532 23344222 34689999997776665543
Q ss_pred cCCCeEEEEEcCCCcc----------ccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 219 VGERYIALWRTDGVKK----------QSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.|-.|+++....+.. ....+++.-.-.. .+..+-+|. |...|+++|+.-|.|.||+-.+++.+
T Consensus 356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc-----CccceEEecCccceEEEEecchhHHH
Confidence 688899995443321 0011122221122 233344555 88999999999999999999999999
Q ss_pred cccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
+-.++.+..+.|.. ...-++.+++.+.+.
T Consensus 430 ~~MegDr~VVNCLE-----pHP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLE-----PHPHLPVLASSGIDH 458 (559)
T ss_pred HHhhcccceEeccC-----CCCCCchhhccCCcc
Confidence 88887777777654 122244666666654
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=7.2e-15 Score=128.81 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=112.0
Q ss_pred CCEEEEEEcc-CCCE--EEEEeCCCcEEEEeCCCCc----------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEE
Q 008041 118 GGVSAISFAT-HGSC--IYSAGADGMVCEIDPLTGS----------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLK 182 (579)
Q Consensus 118 ~~V~~l~~~~-~~~~--l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~ 182 (579)
+.+.+..+.. ++.+ ++.|..+|.|.+||+.++. .+.....|..+|.++.+.+.-..=++|+ ..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 4456665422 3333 6678899999999999873 3334456888999999987555545555 5777
Q ss_pred EEECCC--Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCC
Q 008041 183 TFNCSD--HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 183 vwd~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
.|+++. +.+ -.+..-..-.|..+.+-||++.++++| +|+.|+||+.++.... ..+..+...+.+++|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pL-----AVLkyHsagvn~vAfs-- 302 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPL-----AVLKYHSAGVNAVAFS-- 302 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCch-----hhhhhhhcceeEEEeC--
Confidence 887753 222 112222234578899999999999998 9999999999998754 3344555777888898
Q ss_pred cccCCCcEEEEEEcCCeEEEEEc
Q 008041 259 GVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
|+...+|+++.|++|.+|++
T Consensus 303 ---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 ---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---CCCchhhhccCCceEEeeec
Confidence 99899999999999999985
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.61 E-value=1.2e-13 Score=128.48 Aligned_cols=243 Identities=18% Similarity=0.207 Sum_probs=164.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC----------------CeEEEEeccCcccccccccccccccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----------------GQVQTEFADIASTETTSLYGNRLEREHLSV 66 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (579)
+.+|+.+ .|+|+|+.||+|+.+|.|.+|.... ......+.+|..
T Consensus 65 ~~aVN~v--Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~------------------ 124 (434)
T KOG1009|consen 65 TRAVNVV--RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD------------------ 124 (434)
T ss_pred cceeEEE--EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc------------------
Confidence 4677555 9999999999999999999997652 011122222322
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~ 146 (579)
.+-.++|.+. +.++++++.|..+++||+..|...... .+|..-|..++|.|-++++++-+.|...+.+++
T Consensus 125 diydL~Ws~d---------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 125 DIYDLAWSPD---------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred chhhhhccCC---------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceeee
Confidence 3334556554 788999999999999999999998655 789999999999999999999999987777766
Q ss_pred CCCceeeEee----------c---------CC----CCeeEEEEccCCCEEEEECC-----------eEEEEECCC-Cee
Q 008041 147 LTGSLLGKFR----------A---------ST----KGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HKK 191 (579)
Q Consensus 147 ~~~~~~~~~~----------~---------~~----~~v~~l~~~p~g~~l~~~~~-----------~i~vwd~~~-~~~ 191 (579)
...+.+.... . |. .-...++|+|+|.++++..| ..++|+-.. .++
T Consensus 195 ~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 195 KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence 4332221111 0 11 23557899999999998752 335554332 234
Q ss_pred eEEeecCCCCEEEEEEec------------------CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041 192 MQKFSGHPGAVRFMTFSD------------------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 192 ~~~~~~h~~~v~~l~~s~------------------~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
+..+++-..++..+.|+| -+-.++.++ .+.|++||.++.... +.. ..-+-..++-.
T Consensus 275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v-~nihy~~iTDi 348 (434)
T KOG1009|consen 275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVV-DNIHYSAITDI 348 (434)
T ss_pred eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEE-eeeeeeeecce
Confidence 555555555666666654 122344443 578999998886543 111 12223334555
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
+|+ +||..++..|.||-+.+-.++..++
T Consensus 349 aws-----~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 349 AWS-----DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence 565 8999999999999888877666554
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=9.6e-15 Score=139.86 Aligned_cols=178 Identities=20% Similarity=0.257 Sum_probs=138.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
-++| +|-.|+|||.=|++++.||.|++|. ++|.+..++ .+...++.|..|.|.+.+
T Consensus 104 ~~A~--~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl------------------~Q~~~~v~c~~W~p~S~~--- 159 (737)
T KOG1524|consen 104 AAAI--SSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV------------------VQNEESIRCARWAPNSNS--- 159 (737)
T ss_pred hhhh--hhcccCCCCceeeeecCCceEEEEe-ccchHHHHH------------------hhcCceeEEEEECCCCCc---
Confidence 4566 7779999999999999999999998 456543332 223456789999987643
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
++-+..|.+.|=.+..+..+.+. ++|.+-|.++.|++..+.+++|+.|-..++||- .|..+.+-..|+.+|
T Consensus 160 -------vl~c~g~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 160 -------IVFCQGGHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI 230 (737)
T ss_pred -------eEEecCCeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence 34455566776666655544444 679999999999999999999999999999994 688888878899999
Q ss_pred eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
++++|+|+ +.++.++ ++.++= ....+.|..++|++||..++.++ ..|.+.+
T Consensus 231 TSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGT-STGQLIV 282 (737)
T ss_pred eeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence 99999999 7777777 666621 23457899999999999988877 4665544
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=9.6e-14 Score=133.30 Aligned_cols=248 Identities=16% Similarity=0.233 Sum_probs=166.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.++-.|.+|+.--. ..+.+|+.+.+.... .++....|. ....+|..+....... .+--+++
T Consensus 130 ~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~------~pi~k~~y~--------gt~P~cHdfn~~~a~~----~g~dllI 190 (636)
T KOG2394|consen 130 NQSGKGDRLCFNVG-RELYVYSYRGAADLS------KPIDKREYK--------GTSPTCHDFNSFTATP----KGLDLLI 190 (636)
T ss_pred cccCCCCEEEEecC-CeEEEEEccCcchhc------cchhhhccc--------CCCCceecccccccCC----CCcceEE
Confidence 44555666665442 357888876532211 112222221 2234455553322111 1667899
Q ss_pred EECCCeEEEEEccCCeEEEEecC----CCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC--------------Cc--
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT--------------GS-- 150 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~--------------~~-- 150 (579)
|-..|.|.+.|+...+.. +++. -....|+|+.|-|.+. .|+.+-.+|.+++||... +.
T Consensus 191 Gf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 191 GFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQF 269 (636)
T ss_pred eeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCee
Confidence 999999999998873322 1111 1236899999999554 477777899999997531 11
Q ss_pred ------------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041 151 ------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 151 ------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 216 (579)
++..+....+.|+..+|+|||++||+.+ |.++|||..+.+++..++..-+...|++|+|||+|+++
T Consensus 270 ~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 270 AILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred EEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence 1122222345788999999999999999 99999999999888888777789999999999999999
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecC-----C-------------------------cccC----
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN-----G-------------------------GVDD---- 262 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------------------~~~~---- 262 (579)
+| +|.-|.||.+...+. +..-..+...++.++|++ . ..+.
T Consensus 350 GG-EDDLVtVwSf~erRV-----VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 350 GG-EDDLVTVWSFEERRV-----VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred cC-CcceEEEEEeccceE-----EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 98 799999999988753 344445556666666651 0 0001
Q ss_pred ---------CCcEEEEEEcCCeEEEEEcCCce
Q 008041 263 ---------AGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 263 ---------~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
....+.+.++|-.+.+||+....
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchhh
Confidence 12468888999999999986543
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.8e-14 Score=134.75 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=149.5
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec--
Q 008041 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-- 197 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~-- 197 (579)
.+++|+++|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++.+ ...+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS 227 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence 6889999999999999999999999888888888888999999999999999999988 7999999999977666542
Q ss_pred CCCCEEEEEEecCC---CE-EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041 198 HPGAVRFMTFSDNG---KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 198 h~~~v~~l~~s~~~---~~-l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 273 (579)
.......+.|+.|+ .+ +++.-..-+.|+.|++........-...+.......++++..+ ++|++++.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence 23446678888776 32 3332223456777776554321000111122233456777777 999999999999
Q ss_pred CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008041 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (579)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (579)
|.|-|++..+.+.+...+ ..|...|+
T Consensus 303 GsVai~~~~~lq~~~~vk------------------------------------------------------~aH~~~VT 328 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK------------------------------------------------------EAHLGFVT 328 (398)
T ss_pred CcEEEEEeceeeeeEeeh------------------------------------------------------hhheeeee
Confidence 999999987766543111 15778899
Q ss_pred EEeecCCcceeeccccceecccceee
Q 008041 354 NLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+.|+||.+++ ++-|.|....+..+
T Consensus 329 ~ltF~Pdsr~~-~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 329 GLTFSPDSRYL-ASVSSDNEAAVTKL 353 (398)
T ss_pred eEEEcCCcCcc-cccccCCceeEEEE
Confidence 99999999999 88888888777766
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.2e-13 Score=142.47 Aligned_cols=242 Identities=17% Similarity=0.211 Sum_probs=169.0
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCC----eEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 16 ALDYFAICSGDARIKIWDT-LKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
|..++.+|+.||.|+||+- .++ +.+..+.+..+ ... +..+. .....|.... ..++
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~----~~~------~~r~~-~~v~dWqQ~~---------G~Ll 1181 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSD----QLP------GARGT-GLVVDWQQQS---------GHLL 1181 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccc----cCc------cCCCC-CeeeehhhhC---------CeEE
Confidence 5568999999999999953 332 33333332211 111 11111 2456676653 4456
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCC--eeE
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKG--ISC 164 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~--v~~ 164 (579)
+++.-..|+|||.....++..+..+-...|+++.-+- .|+.++.|..||.|++||.+.. ..+..++.|... |..
T Consensus 1182 ~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence 6666778999999999888777666667788886543 5789999999999999998743 357778888886 999
Q ss_pred EEEccCCCE-EEEEC--CeEEEEECCCCee--eEEeecCC--C-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 165 MAVSSDGKM-LATAA--GQLKTFNCSDHKK--MQKFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 165 l~~~p~g~~-l~~~~--~~i~vwd~~~~~~--~~~~~~h~--~-~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+.+.+.|-- +++|+ |.|++||++.... ..+...|. + ..+++..++....+++|+ . +.|+||++...+...
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceEEEEecChhhhcc
Confidence 999987754 88887 9999999997422 22223332 3 589999999999988876 4 899999998776432
Q ss_pred ceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 237 ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.... ..+........|+.|. |...++++|+.|..|.||.....
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence 1100 1112223344777786 88899999999999999987654
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.58 E-value=3.4e-13 Score=137.01 Aligned_cols=244 Identities=18% Similarity=0.218 Sum_probs=168.9
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCE--EEEEeC
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSC--IYSAGA 137 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~--l~s~~~ 137 (579)
...++|+.+.+.+ ..+++.|+.+|.|.+||++.+.. +......|..+|+.+.|..+-.- |++++.
T Consensus 242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 3467788888876 67899999999999999997765 22333579999999999775444 999999
Q ss_pred CCcEEEEeCCCCce------eeEee------cCCCCeeEEEEccCC-CEEEEEC--CeEEEEE---CCCCe-----eeEE
Q 008041 138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSDG-KMLATAA--GQLKTFN---CSDHK-----KMQK 194 (579)
Q Consensus 138 d~~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd---~~~~~-----~~~~ 194 (579)
||.|..|+++.-.. ..... .....+++++|.|.. ..+++|. |.|+--+ .+.+. .+..
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 99999998764322 11111 112378899998843 4566666 8776632 22221 2345
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC-CcEEEEEEcC
Q 008041 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET 273 (579)
Q Consensus 195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d 273 (579)
+..|.++|..+.++|=+..++.++ .|.++++|+...... .++........+..+.|+ |. ...++++..|
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~ 463 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD 463 (555)
T ss_pred ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence 667889999999999887666666 499999999773321 234444555556677787 54 3567888889
Q ss_pred CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008041 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (579)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (579)
|.|.+||+..... .|. .+ ...+.....
T Consensus 464 G~l~iWDLl~~~~----~Pv-------------~s------------------------------------~~~~~~~l~ 490 (555)
T KOG1587|consen 464 GNLDIWDLLQDDE----EPV-------------LS------------------------------------QKVCSPALT 490 (555)
T ss_pred Cceehhhhhcccc----CCc-------------cc------------------------------------ccccccccc
Confidence 9999999753321 110 00 001122445
Q ss_pred EEeecCCcceeeccccceecccceeee
Q 008041 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.|+++|+.| +.|...|++.++++.
T Consensus 491 ~~~~s~~g~~l-avGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSPNGKLL-AVGDANGTTHILKLS 516 (555)
T ss_pred eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence 66789999999 999999999999884
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=136.77 Aligned_cols=137 Identities=22% Similarity=0.415 Sum_probs=115.2
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC--------------CeEEEE-ecC------------CCC
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA--------------GQLKWR-LSD------------CHP 117 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~--------------~~~~~~-~~~------------~h~ 117 (579)
...++|+.|.+.+ ...++++-.+|.+++||..- +..... ..+ --.
T Consensus 219 ktsvT~ikWvpg~--------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 219 KSSVTCIKWVPGS--------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred ccceEEEEEEeCC--------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence 4689999999986 67788999999999997531 110000 000 012
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008041 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~ 195 (579)
+.|..++|+|||++|++.+.||.++|||..+.+.+..++..-+...|++|+|||++|++|+ .-|.||.+...+.+..-
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 4688999999999999999999999999998888888888888999999999999999999 78999999999999999
Q ss_pred ecCCCCEEEEEEec
Q 008041 196 SGHPGAVRFMTFSD 209 (579)
Q Consensus 196 ~~h~~~v~~l~~s~ 209 (579)
++|.+.|+.++|.|
T Consensus 371 qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDP 384 (636)
T ss_pred cccccceeeEeecc
Confidence 99999999999983
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.6e-13 Score=138.73 Aligned_cols=206 Identities=15% Similarity=0.154 Sum_probs=134.4
Q ss_pred CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC---CeEEEEE
Q 008041 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALA 102 (579)
Q Consensus 26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd 102 (579)
+..|.+||..... ...+..+...+....|+++ +..++.++.+ ..|++||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~i~i~d 234 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD---------------------------GSKLAYVSFENKKSQLVVHD 234 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCC---------------------------CCEEEEEEecCCCcEEEEEe
Confidence 4689999986554 4445544444454555544 6667666543 3599999
Q ss_pred ccCCeEEE-EecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEE--EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008041 103 VSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 103 ~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~i--wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
+.+++... ....+| ..+++|+|||+.|+.++ .+|.+.+ ||+.++.. ..+..+...+.+..|+|||+.++.++
T Consensus 235 l~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s 310 (429)
T PRK01742 235 LRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS 310 (429)
T ss_pred CCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE
Confidence 99876422 112333 34689999999887764 6776555 56665554 45555666788999999999877654
Q ss_pred ---CeEEEEECC--CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041 179 ---GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 179 ---~~i~vwd~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
+...+|++. .+. ...+ .+.. ....|+|||++++..+ .++ +.+||+.+++.. . ..... .....
T Consensus 311 ~~~g~~~I~~~~~~~~~-~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~---~-lt~~~---~~~~~ 377 (429)
T PRK01742 311 DRSGSPQVYRMSASGGG-ASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTE---V-LSSTF---LDESP 377 (429)
T ss_pred CCCCCceEEEEECCCCC-eEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeE---E-ecCCC---CCCCc
Confidence 666777654 332 2222 3443 4578999999998876 454 666999887532 1 11111 11234
Q ss_pred EecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 254 CIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.|+ |||++|+.++.+|.+.+|++
T Consensus 378 ~~s-----PdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 378 SIS-----PNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred eEC-----CCCCEEEEEEcCCCceEEEE
Confidence 465 99999999999998888875
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.5e-13 Score=138.90 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=126.1
Q ss_pred CcccceEEEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++ ...+|||||++||+++.+ ..|.+||+.+++.... .... ++ .....|.|.
T Consensus 204 ~~v--~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--------------g~----~~~~~wSPD---- 258 (429)
T PRK01742 204 QPL--MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--------------GH----NGAPAFSPD---- 258 (429)
T ss_pred Ccc--ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--------------Cc----cCceeECCC----
Confidence 346 455999999999988754 3699999988864322 1111 11 113455543
Q ss_pred ccccCCcEEEEE-ECCCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-ceeeEe
Q 008041 81 KRKLGSSLLVLG-TGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF 155 (579)
Q Consensus 81 ~~~~~~~~l~~~-~~~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~-~~~~~~ 155 (579)
+..|+++ +.+|. |++||+.+++.. .+ ..+...+.+..|+|||+.++.++ .++...+|++... .....+
T Consensus 259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred -----CCEEEEEEecCCcEEEEEEECCCCCeE-ee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 5556665 46776 555577666653 33 34667788999999999876655 5778888876432 222223
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
.+.. .+..|+|||+.++.++ ..+.+||+.+++.......+ ....+.|+|||+++++++ .++.+.+|.+.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~ 401 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV 401 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence 3333 4678999999998887 67778999988654322222 335678999999999987 58888888764
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.3e-13 Score=128.28 Aligned_cols=257 Identities=17% Similarity=0.254 Sum_probs=171.6
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCc-ccc-ccccccccccc-cccccccceEEeeec----------
Q 008041 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIA-STE-TTSLYGNRLER-EHLSVDYTCMKWLSV---------- 76 (579)
Q Consensus 11 ~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~w~~~---------- 76 (579)
+..||||+|+ |+|.+.-.|++||+.+-.+.- ..|- +.+ .-...+.++.. .++. .-..+.+..-
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF--ERhlDae~V~feiLsDD~SK~v~L~-~DR~IefHak~G~hy~~RIP 133 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKF--ERHLDAEVVDFEILSDDYSKSVFLQ-NDRTIEFHAKYGRHYRTRIP 133 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeee--eecccccceeEEEeccchhhheEee-cCceeeehhhcCeeeeeecC
Confidence 3899999986 567788999999997655432 2111 111 11111111100 0000 0000111100
Q ss_pred --ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 77 --DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 77 --~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
..+......+.-|++++....|+-+|+..|..+.-+ ....++++++..++-..+|++|+.+|.|..||.+....+.+
T Consensus 134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred cCCccccccCCCccEEEeecCcceEEEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 000011112445788888889999999999987555 34568899999999888999999999999999988776665
Q ss_pred eec------CCC-----CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecC--CCEEEEEe
Q 008041 155 FRA------STK-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSA 218 (579)
Q Consensus 155 ~~~------~~~-----~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~--~~~l~s~~ 218 (579)
+.. |.+ .|+++.|+.+|-.+++|. |.+++||+++.+++..- .+..-+|..+.|.+. +..+++.
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~- 291 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM- 291 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-
Confidence 443 223 499999999999999998 99999999998886543 233568899999765 4456654
Q ss_pred cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
+...++|||-.+++.. ..+..... +...|+- |++.+++++..++.+..|=++..
T Consensus 292 -Dk~~~kiWd~~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 292 -DKRILKIWDECTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred -chHHhhhcccccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcccc
Confidence 5788999999998743 23333333 4444444 89999999999998888865543
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.55 E-value=1.4e-13 Score=135.24 Aligned_cols=230 Identities=15% Similarity=0.199 Sum_probs=160.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .|++||.||+.+|+|+.|..|.||+-+-.-.+. + .|.. .+.|+.|+|.+
T Consensus 54 DtV--ycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y-SH~D------------------~IQCMsFNP~~------ 105 (1081)
T KOG1538|consen 54 DTV--YCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y-SHND------------------AIQCMSFNPIT------ 105 (1081)
T ss_pred ceE--EEEEEccCCceeccCCCceeEEEecccccceee-e-ccCC------------------eeeEeecCchH------
Confidence 456 566999999999999999999999865222111 1 2333 44555555542
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~ 160 (579)
..+++++ -.+.-+|+........ ..-...|.+++|..||++++.|-.||+|.+-+ .+|+....+.. ...
T Consensus 106 ---h~LasCs-LsdFglWS~~qK~V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 106 ---HQLASCS-LSDFGLWSPEQKSVSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNS 177 (1081)
T ss_pred ---HHhhhcc-hhhccccChhhhhHHh---hhhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCC
Confidence 2344443 3456778876654431 12346789999999999999999999999987 45655444443 556
Q ss_pred CeeEEEEccCC-----CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 161 GISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g-----~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
+|.+++|+|.. ..+++.+ .++..|.+ +|+.+.+-..-.-...|+.+.++|.|++.|| .|+.+++|.-..-.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGG-SDKQLSLFTRDGVR 255 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEcc-CCCceEEEeecCeE
Confidence 99999999953 4666666 56777765 3444443333334457899999999999998 59999998754432
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
.-++...+..+-.+... |++++++.|+.||+|--|++-
T Consensus 256 ------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 256 ------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhhH
Confidence 23444555556556665 999999999999999999853
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=5.7e-13 Score=123.45 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=126.9
Q ss_pred CcEEEEEECC--CeEEEEEccCCeEEEEecCCCC--------CCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC-cee
Q 008041 86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHP--------GGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLL 152 (579)
Q Consensus 86 ~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~--------~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~-~~~ 152 (579)
..++++|+.. ..+.+||+...+.++.-..-.+ -.++++.|-+. ...|++++.-+.|++||.+.+ +++
T Consensus 161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV 240 (412)
T KOG3881|consen 161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV 240 (412)
T ss_pred CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence 5667778888 7799999999877655432111 13568899887 778999999999999999865 678
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
..|.....+++++...|+|+.+++|. +.+..||.+.++.+.. +.+..+.|++|..+|.+++++++| -|+.++|+|+
T Consensus 241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~ 319 (412)
T KOG3881|consen 241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDI 319 (412)
T ss_pred eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeec
Confidence 88888888999999999999999998 9999999999998766 889999999999999999999998 6999999999
Q ss_pred CCCccc
Q 008041 230 DGVKKQ 235 (579)
Q Consensus 230 ~~~~~~ 235 (579)
.+.+..
T Consensus 320 ktrkll 325 (412)
T KOG3881|consen 320 KTRKLL 325 (412)
T ss_pred ccchhh
Confidence 996543
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=4.9e-15 Score=148.77 Aligned_cols=238 Identities=19% Similarity=0.196 Sum_probs=171.9
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~ 191 (579)
.+|...|+|+.|...|.++++|+.|..|+||.+.++.+.....+|.+.|+.++.+.+..++++++ ..|++|-+.++.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 48999999999999999999999999999999999999999999999999999999988898888 5799999999999
Q ss_pred eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-cceeeeeeecCceeEEeEEecCCcccCCCcEEEEE
Q 008041 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 192 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (579)
+..+.+|++.|++|+|+|-- +++ .||++++||.+-.-.. .... ... ..........+. ..+..++++
T Consensus 267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~y~prp-~~~-~~~~~~~s~~~~-----~~~~~f~Tg 334 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRIYVPRP-LKF-TEKDLVDSILFE-----NNGDRFLTG 334 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccccCCCC-CCc-ccccceeeeecc-----ccccccccc
Confidence 99999999999999999964 444 7999999998822111 0000 011 122333344444 677889999
Q ss_pred EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008041 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (579)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (579)
+.|+....|...-.. ......+-+. ++.+.. .+.+++.++-. ...+....+.....+.+|..
T Consensus 335 s~d~ea~n~e~~~l~---~~~~~lif~t----~ssd~~---~~~~~ar~~~~--------~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA---WRSNLLIFVT----RSSDLS---SIVVTARNDHR--------LCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cCCcccccchhhHhh---hhccceEEEe----cccccc---ccceeeeeeeE--------eeeeecccchhhhhhccccc
Confidence 999998888653211 1110001011 011111 13333333211 11122333344456778999
Q ss_pred CcEEEeecCCcceeeccccceecccceeeee
Q 008041 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.+..+.++|-...++.+++.|++..+|++-.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 9999999999988889999999999999853
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.1e-12 Score=117.81 Aligned_cols=132 Identities=18% Similarity=0.333 Sum_probs=99.7
Q ss_pred CeEEEEEccCCe-EEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008041 96 GDVLALAVSAGQ-LKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (579)
Q Consensus 96 g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~ 172 (579)
|...+|.+.... ....+.-...++|.+++|+|+|+.|+.+ ..++.|.+||++ ++.+..+. ...++.+.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 335555553322 2222322345679999999999987654 357799999986 66666664 46778999999999
Q ss_pred EEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----CCeEEEEEcCCC
Q 008041 173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV 232 (579)
Q Consensus 173 ~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-----d~~i~vwd~~~~ 232 (579)
++++++ |.|.+||+++.+.+.++. |. .++.+.|+|||++++++... |+.++||+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999986 579999999998887765 43 47899999999999998753 788999998654
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=4.3e-13 Score=121.04 Aligned_cols=206 Identities=8% Similarity=0.059 Sum_probs=156.9
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~ 142 (579)
..+++|.+|.+. ...++++..+..|.||.....+ .....+..|...|++++|+|..+.|++|+.|..-+
T Consensus 10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 457788888875 6789999999999999988776 23345578999999999999999999999999999
Q ss_pred EEeCCCC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCE
Q 008041 143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 143 iwd~~~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~ 213 (579)
+|....+ ++.-.+..+....+++.|+|.++.|++|+ ..|.||-.+...- ...-+.+.+.|++++|+|++-.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 9998433 44555666888999999999999999999 5778876654322 1122456788999999999988
Q ss_pred EEEEecCCCeEEEEEcCCCccc--c-----------ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 214 VLSSAVGERYIALWRTDGVKKQ--S-----------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 214 l~s~~~~d~~i~vwd~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
+++++ .|+..+|++..-.... . ...+.........+..+.|+ |+|..|+-.+.|..+.+=|
T Consensus 161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence 88776 7999999975321100 0 01122222445556677777 9999999999999999988
Q ss_pred cCCce
Q 008041 281 GQNIE 285 (579)
Q Consensus 281 ~~~~~ 285 (579)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 66553
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.8e-12 Score=116.78 Aligned_cols=195 Identities=18% Similarity=0.300 Sum_probs=139.3
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.+|.+ +|++.-.-||++..|-.|+|||-.+ .+...++ ......++|++|-|..
T Consensus 100 dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------- 152 (445)
T KOG2139|consen 100 DLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------- 152 (445)
T ss_pred ceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC-------
Confidence 34555 8999777888999999999999765 4444443 2235678899999876
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEE-----------Ee--cCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCc
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKW-----------RL--SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGS 150 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~-----------~~--~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~ 150 (579)
..-+++|+.. -|.+|.....-... ++ ..+| .+|+++.|++||..+++++ .|..|.+||..++.
T Consensus 153 -aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 153 -ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred -cceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 4456666654 47888765321110 11 1345 6899999999999999987 56789999999998
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
.+....-..+.++-+.|||||.++.++. +..++|+...........-..+.|....|+|.|++|+.+++ +.-.+|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~lys 307 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLYS 307 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEEE
Confidence 7766544566889999999999998887 89999965433222222233458999999999999888764 4445565
Q ss_pred cCC
Q 008041 229 TDG 231 (579)
Q Consensus 229 ~~~ 231 (579)
+..
T Consensus 308 l~f 310 (445)
T KOG2139|consen 308 LTF 310 (445)
T ss_pred Eee
Confidence 543
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=5.3e-12 Score=124.86 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=179.3
Q ss_pred CEEEE-EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 18 DYFAI-CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 18 ~~las-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
++++. -..+|.|.|.|..+.+.+.++...........|+++ ++++++++.||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence 45544 445899999999999999988754433333444444 78889999999
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------CCCeeEEEEc
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS 168 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~ 168 (579)
.|.++|+.+++.+.++..+ ....++++++||+++++++ .++.+.++|.++.+.++.+... ...+.++..+
T Consensus 59 ~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp EEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred eEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 9999999999998887543 4578999999999987665 6899999999999998887643 2367788888
Q ss_pred cCCCEEEEEC---CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce------
Q 008041 169 SDGKMLATAA---GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS------ 238 (579)
Q Consensus 169 p~g~~l~~~~---~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~------ 238 (579)
|....++..- +.|.+.|....+.+. +............|+|+++|++.+...++.|-++|..+.+.....
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p 216 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP 216 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence 9888666553 888888987654432 233344567789999999998887777889999998887543100
Q ss_pred ---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041 239 ---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
....+.|+..-.- .... ..+...++.-..+.+.+||..+.+.++.++......... .+|+++ .+.
T Consensus 217 ~~~~~~~~php~~g~v-w~~~-----~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~--thP~s~----~vw 284 (369)
T PF02239_consen 217 HPGPGANFPHPGFGPV-WATS-----GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK--THPDSR----YVW 284 (369)
T ss_dssp EETTEEEEEETTTEEE-EEEE-----BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE----TT-S----EEE
T ss_pred cccccccccCCCcceE-Eeec-----cccceecccccCCccccchhhcCeEEEEEECCCCcceee--cCCCCc----cEE
Confidence 0111122221110 0011 223333333334466678877777665543221111111 245555 444
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeecccccee-cccceee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLK-SKRGRYV 379 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~-~~~~w~~ 379 (579)
+...-+. ....+.+.+-... ....++.. ....+..+.|++||+.+-+|.-..+ .+.+++.
T Consensus 285 vd~~~~~---~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 285 VDTFLNP---DADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE-TT-S---SHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eeccCCC---CCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 4311110 0223333332222 22222221 2224899999999998745544333 5666654
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=5.2e-11 Score=107.77 Aligned_cols=143 Identities=17% Similarity=0.309 Sum_probs=108.0
Q ss_pred EEEECCCeEEEEEccCC-eEEEEec-CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCce--eeEeecCCCCeeE
Q 008041 90 VLGTGGGDVLALAVSAG-QLKWRLS-DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL--LGKFRASTKGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~-~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~--~~~~~~~~~~v~~ 164 (579)
++.-..+.|+||....+ +.+..+. .....+..+++-+.+..+|+.-| .-|.|++-|+...+. ...+.+|...|.|
T Consensus 107 iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac 186 (346)
T KOG2111|consen 107 IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC 186 (346)
T ss_pred EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE
Confidence 44445678999998844 3332222 12234455555444444555433 568999999976655 4678999999999
Q ss_pred EEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 165 MAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~-~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
++.+-+|..+|+++ | -|+|||..+|+.+.++... ...|.+++|+|++.+|++++ +.|++.|+.++...
T Consensus 187 v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 187 VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 99999999999999 6 5899999999999998643 35699999999999999887 78999999987744
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.1e-11 Score=126.55 Aligned_cols=235 Identities=9% Similarity=-0.018 Sum_probs=146.0
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.+||....... .+ ..+...+.+.+|+|||+.++..+ .+..+++||+.+++.... ....+.+..+.|+|||+.
T Consensus 180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 5999998866543 22 23567899999999999987654 245799999988764332 223334557899999998
Q ss_pred EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecC
Q 008041 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+... | .|++||+.+++.. .+..+...+....|+|||+.|+.++..++. |+++++.+++.. .+...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------~lt~~ 329 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------RITWE 329 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------EeecC
Confidence 88652 3 6999999888654 444455567889999999998877644444 444466555322 11122
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccccee
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (579)
........|+ |||++|+..+.+ ..|++||+.+++...-..... .....++|+++ .|+.++.++.
T Consensus 330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~---~~~p~~SpDG~----~i~~~s~~~~- 396 (429)
T PRK03629 330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFL---DETPSIAPNGT----MVIYSSSQGM- 396 (429)
T ss_pred CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCC---CCCceECCCCC----EEEEEEcCCC-
Confidence 2223345666 999999887653 368889988875432111111 11223678877 6666665531
Q ss_pred cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008041 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
...+.+.. ........+..|...+...+|||
T Consensus 397 ---~~~l~~~~--~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 397 ---GSVLNLVS--TDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---ceEEEEEE--CCCCCeEECccCCCCcCCcccCC
Confidence 11122211 01122234556776777777776
No 216
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.49 E-value=4.6e-12 Score=112.92 Aligned_cols=206 Identities=10% Similarity=0.129 Sum_probs=150.1
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC--eEEE------EecCCCCCCEEEEEEcc-CCCEEEEE
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKW------RLSDCHPGGVSAISFAT-HGSCIYSA 135 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~--~~~~------~~~~~h~~~V~~l~~~~-~~~~l~s~ 135 (579)
..+.+.+.|.|...... .. ++++.+..+++|.+... +... .....+.++++++.|+. +-+++.++
T Consensus 96 ~YP~tK~~wiPd~~g~~----pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVY----PD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCccceEecCCccccC----cc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 45677888888653211 22 45566678999999842 2211 11235678999999987 66789999
Q ss_pred eCCCcEEEEeCCCCce---eeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEE
Q 008041 136 GADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMT 206 (579)
Q Consensus 136 ~~d~~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~~v~~l~ 206 (579)
|-|-+..+||++++.. ...+-+|...|..++|...+ ..||+.+ |++++||++..+.-..+ .....+...++
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence 9999999999998733 44577899999999999865 4677766 99999999976543333 22245778889
Q ss_pred EecCC-CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 207 FSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 207 ~s~~~-~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
|++.. +++++-..+...|.|.|++.... .+..+..+...+..+.|.+ ..+.+|++++.|.++.+||+++.
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCc----ceehhhcCcccccceEecC----CCCceeeecCCcceEEEEecccc
Confidence 98754 57777665567899999998753 3556667777777787772 24578999999999999998654
No 217
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.49 E-value=1.7e-14 Score=117.01 Aligned_cols=80 Identities=31% Similarity=0.462 Sum_probs=76.2
Q ss_pred eecccCChhhHHHHhhccChhhHHHHHHHHHHHHh-cCCCCcchhHHHHHHHHHHhcccccCC-CChhHHHHHHHHHHHH
Q 008041 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKVRKK 561 (579)
Q Consensus 484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~-~~~~~~~~~~~wl~~ll~~h~~~l~~~-~~l~~~l~~l~~~~~~ 561 (579)
++++.+|+++|++|+++||+.|+.+||+++++.++ +++.+.+++++|+++||+.|++||++. |++.+.|..|++.++.
T Consensus 8 ~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~ 87 (110)
T PF04003_consen 8 EVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE 87 (110)
T ss_pred HHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999888 788899999999999999999999999 9999999999999999
Q ss_pred hh
Q 008041 562 KL 563 (579)
Q Consensus 562 r~ 563 (579)
|+
T Consensus 88 ~~ 89 (110)
T PF04003_consen 88 RL 89 (110)
T ss_pred HH
Confidence 99
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.3e-11 Score=125.86 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=149.2
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCC--CeE--EEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLK--GQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
-|.++||+++++|+|..||+|.||.--. +.. .+.+.=|...+ .++.|.+.
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V------------------~~L~fS~~-------- 262 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV------------------NSLSFSSD-------- 262 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc------------------ceeEEecC--------
Confidence 4559999999999999999999996322 110 11111122233 33333332
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---C---
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---S--- 158 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~--- 158 (579)
+.+|++|+..|.+.+|...+++ .+++.--.++|..+.++||+.+......|..|.+....+.....++.+ .
T Consensus 263 -G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 263 -GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred -CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 8899999999999999999998 467777789999999999999998888999988886543222111111 0
Q ss_pred -----CCCeeEEEEcc-----------------------------------------------------CCCEEEEEC--
Q 008041 159 -----TKGISCMAVSS-----------------------------------------------------DGKMLATAA-- 178 (579)
Q Consensus 159 -----~~~v~~l~~~p-----------------------------------------------------~g~~l~~~~-- 178 (579)
.+-.+.++++| .|.++++..
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 11223333333 444444432
Q ss_pred ----------CeEEEEECCCCee----eEE-eecCCCCEEEEEEec-CCC-EEEEEecCCCeEEEEEcCCCccc-----c
Q 008041 179 ----------GQLKTFNCSDHKK----MQK-FSGHPGAVRFMTFSD-NGK-YVLSSAVGERYIALWRTDGVKKQ-----S 236 (579)
Q Consensus 179 ----------~~i~vwd~~~~~~----~~~-~~~h~~~v~~l~~s~-~~~-~l~s~~~~d~~i~vwd~~~~~~~-----~ 236 (579)
..++.|....... ... ...|...+...+|.+ ... ..++++ .||.+++|-+...+.. .
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-~dg~~KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-VDGDFKIWVFTDDSNIYKKSSN 498 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-cCCeEEEEEEecccccCcCccc
Confidence 1344553332211 111 134655555544443 222 567776 7999999998544321 1
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
..|......+...+...+|+ .||. +++.+.|++|.+||..+.+.
T Consensus 499 W~c~~i~sy~k~~i~a~~fs-----~dGs-lla~s~~~~Itiwd~~~~~~ 542 (792)
T KOG1963|consen 499 WTCKAIGSYHKTPITALCFS-----QDGS-LLAVSFDDTITIWDYDTKNE 542 (792)
T ss_pred eEEeeeeccccCcccchhhc-----CCCc-EEEEecCCEEEEecCCChhh
Confidence 22333333445566677776 7885 55667889999999988533
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.6e-11 Score=126.10 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=120.0
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|....... .+ ..|...+.+..|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus 183 ~l~~~d~dg~~~~-~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVR-YL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcE-EE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 6889998665543 33 357789999999999999887753 468999999888653 34445667788999999998
Q ss_pred EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++.. + ..|++||+.+++. ..+..+........|+|||++++..+..++ .|++||+..++.. .+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~------~lt~~ 332 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR------RISFG 332 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE------EeecC
Confidence 7644 3 3688999988764 456666666778999999999887764333 6888887765432 12111
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcC
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQ 282 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~ 282 (579)
........|+ |||++|+..+.++ .|.+||..
T Consensus 333 ~~~~~~~~~S-----pdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 333 GGRYSTPVWS-----PRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCcccCeEEC-----CCCCEEEEEEcCCCceEEEEEECC
Confidence 2223335566 9999998876532 46666643
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.1e-11 Score=123.92 Aligned_cols=215 Identities=18% Similarity=0.187 Sum_probs=139.6
Q ss_pred CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC---CCeEEEEEc
Q 008041 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV 103 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---~g~i~iwd~ 103 (579)
..|.+||...+.. ..+..+...+....|+++ +..|+..+. +..|++||+
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD---------------------------G~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPN---------------------------RQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCC---------------------------CCEEEEEEecCCCCEEEEEEC
Confidence 3688888754433 344444434443444443 555666553 356999999
Q ss_pred cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008041 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (579)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-- 178 (579)
.+++.. .+ ..+.+.+.+..|+|||+.++ +.+.++. |++||+.+++. ..+..+........|+|||+.++..+
T Consensus 234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence 988763 22 34566788999999999865 5555554 78889887765 44555555667899999999888765
Q ss_pred ---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041 179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 179 ---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
..|++||+.+++. ..+..+...+....|+|||++++..+... ..|.+||+..+... .+... ......
T Consensus 311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------~lt~~-~~~~~p 382 (435)
T PRK05137 311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------ILTSG-FLVEGP 382 (435)
T ss_pred CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------eccCC-CCCCCC
Confidence 2789999876654 34443455667789999999998875322 36888887654321 11111 123445
Q ss_pred EecCCcccCCCcEEEEEEcC------CeEEEEEcCCce
Q 008041 254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNIE 285 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~ 285 (579)
.|+ |||++|+..+.+ ..++++|+..+.
T Consensus 383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 566 999998776553 257777775543
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=3.2e-12 Score=115.52 Aligned_cols=200 Identities=11% Similarity=0.148 Sum_probs=151.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+|| .|.+|++|+..+|.+-....|.||.....+ ..++++.|.. .++++.|.+.
T Consensus 11 ~pi--tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~------------------~vtgvdWap~---- 66 (361)
T KOG1523|consen 11 EPI--TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK------------------IVTGVDWAPK---- 66 (361)
T ss_pred Cce--eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc------------------ceeEEeecCC----
Confidence 678 666999999999999999999999887655 4555554443 4556777765
Q ss_pred ccccCCcEEEEEECCCeEEEEEcc-CCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----eE
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVS-AGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----GK 154 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~-~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~ 154 (579)
.+.|++|+.|..-++|... .++-... .+..|+..++++.|+|.++.|++|+.-..|.+|-++....- ..
T Consensus 67 -----snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi 141 (361)
T KOG1523|consen 67 -----SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI 141 (361)
T ss_pred -----CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh
Confidence 5569999999999999994 4432211 12358889999999999999999999999999887543221 12
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC-----CC-------------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~-----~~-------------~~~~~~~~~h~~~v~~l~~s~~~~~l 214 (579)
-+.+...|++++|+|++-++++|+ +..++|.. ++ |+.+.++....+.|..+.|+|+|..|
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 233566899999999999999988 77777643 21 23344454566889999999999999
Q ss_pred EEEecCCCeEEEEEcCCCc
Q 008041 215 LSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~~~ 233 (579)
+-.+ .|..+.+-|.....
T Consensus 222 awv~-Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 222 AWVG-HDSTVSFVDAAGPS 239 (361)
T ss_pred eEec-CCCceEEeecCCCc
Confidence 9998 79999999987764
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=8.6e-12 Score=112.01 Aligned_cols=153 Identities=16% Similarity=0.238 Sum_probs=107.5
Q ss_pred EEEEEccCCCEEEEEeC---C-------CcEEEEeCC-CCceeeEeec-CCCCeeEEEEccCCCEEEEEC----CeEEEE
Q 008041 121 SAISFATHGSCIYSAGA---D-------GMVCEIDPL-TGSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF 184 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~---d-------~~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~----~~i~vw 184 (579)
..+.|+|+|.+|+.-.. | +...+|.++ .+..+..+.- ..++|.+++|+|+|+.+++.. +.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788888887654322 1 234444442 2233444433 345799999999999887653 589999
Q ss_pred ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC
Q 008041 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (579)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
|++ ++.+.++. ...++.+.|+|+|++++.++.. .|.|.+||.++.+. +....+.. ...+.|+ |
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P 153 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P 153 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence 996 66666664 5677899999999999998743 36799999996653 34444443 4567787 9
Q ss_pred CCcEEEEEEc------CCeEEEEEcCCceeecc
Q 008041 263 AGLYVLAISE------TGVCYIWYGQNIEELRN 289 (579)
Q Consensus 263 ~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 289 (579)
+|+++++++. |+.++||+.. |+++..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999999864 7899999984 555543
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=2.2e-10 Score=113.46 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=133.8
Q ss_pred CcEEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
.+++++ -..+|.|.+.|..+.+.+.++..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 445544 4467999999999999988875432 334567899999999999999999999999999999988644 5688
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
++++|||++++++. +.+.++|.++.+.+++++.. ...+..+..+|.+..++..-.+-+.|.+-|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 89999999999998887543 346778888898886666654457787778776642
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeec
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELR 288 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 288 (579)
. .+..+ .......-..|+ |++++++++ ..++.|-++|.++++...
T Consensus 163 ~---~~~~i-~~g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 163 L---KVTTI-KVGRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp E---EEEEE-E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred c---ceeee-cccccccccccC-----cccceeeecccccceeEEEeeccceEEE
Confidence 2 12222 223334445666 999987665 457899999999887764
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=5.3e-10 Score=110.91 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=153.5
Q ss_pred EEEccCCCEEEEEeC----CCcEEEEECCC--CeEEE--EeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 11 TSFSPALDYFAICSG----DARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 11 ~~fspdg~~lasg~~----dg~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++++|++++|.++.. +|.|..|++.. +.+.. +...... ..| +...+++
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-------------------~p~--~i~~~~~--- 97 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-------------------SPC--HIAVDPD--- 97 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-------------------CEE--EEEECTT---
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-------------------CcE--EEEEecC---
Confidence 489999999988876 56888888765 44322 2211111 111 1111221
Q ss_pred ccCCcEEEEEE-CCCeEEEEEccC-CeEEEE--ec----------CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008041 83 KLGSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (579)
Q Consensus 83 ~~~~~~l~~~~-~~g~i~iwd~~~-~~~~~~--~~----------~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~ 147 (579)
+.+++++. .+|.|.++++.. +..... .. ........++.|+|+|++++++. ....|++|++.
T Consensus 98 ---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 98 ---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp ---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred ---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 66677766 578899999987 443221 11 11235688999999999988765 34579999987
Q ss_pred CCc--ee--eEeec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeec----C--CCCEEEEEEec
Q 008041 148 TGS--LL--GKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSG----H--PGAVRFMTFSD 209 (579)
Q Consensus 148 ~~~--~~--~~~~~-~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~~~--~~~~~~----h--~~~v~~l~~s~ 209 (579)
... .. ..+.. .......+.|+|+|+++.+.. +.|.+|++. +++. +..+.. . ......|.++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 654 32 22332 344789999999999988876 799999888 4432 222221 1 12578899999
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEc--CCcee
Q 008041 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNIEE 286 (579)
Q Consensus 210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~ 286 (579)
||++|+++...++.|.+|++...... ...+..........+.+.++ |+|++|++++. ++.|.+|++ ++|..
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 99999998878889999999543111 11233333334445666777 99999999986 679999975 45554
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.9e-11 Score=124.77 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=126.8
Q ss_pred eEEEEccCCCEEEEEeC---CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 9 l~~~fspdg~~lasg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
...+|||||+.||..+. +..|.+|++.+|+...... .. ++ .....|.|.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~--------------~~----~~~~~~SPD--------- 253 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FP--------------RH----NGAPAFSPD--------- 253 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CC--------------CC----cCCeEECCC---------
Confidence 56699999999997653 4579999998886543221 11 11 112445553
Q ss_pred CcEEEEE-ECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceeeEeecCC
Q 008041 86 SSLLVLG-TGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~-~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..|+.. +.+| .|++||+.+++.. .+. .+...+....|+|||+.|+.++.+ + .|+.+|+.+++.. .+....
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~ 330 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG 330 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC
Confidence 5555544 4455 4999999988765 332 344567899999999998777654 3 4555677666543 334344
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe---EEEEEcCC
Q 008041 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY---IALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~---i~vwd~~~ 231 (579)
....+..|+|||+.++... ..|++||+.+++.. .+... .......|+|||++++.++ .++. +.++++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCC
Confidence 4566789999999988765 36899999888643 34322 2334678999999999887 4553 67777755
Q ss_pred Cc
Q 008041 232 VK 233 (579)
Q Consensus 232 ~~ 233 (579)
..
T Consensus 408 ~~ 409 (429)
T PRK03629 408 RF 409 (429)
T ss_pred CC
Confidence 43
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=8.3e-12 Score=113.81 Aligned_cols=251 Identities=16% Similarity=0.192 Sum_probs=164.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCC-Ce----EEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLK-GQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
-++.|...|.+||+|..+|+|.+|.-.. .+ ...+++.|..... |. ..-.....+..+.|.+...
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFD---YL---kSleieEKinkIrw~~~~n----- 97 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFD---YL---KSLEIEEKINKIRWLDDGN----- 97 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccc---hh---hhhhhhhhhhhceecCCCC-----
Confidence 3559999999999999999999996432 22 3444554443221 10 1112234667788887653
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEE-----------------------------------EEecCCCCCCEEEEEEccC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLK-----------------------------------WRLSDCHPGGVSAISFATH 128 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~-----------------------------------~~~~~~h~~~V~~l~~~~~ 128 (579)
...+++.+.|.+|++|.+...... ..+..+|+-.|.++.++.|
T Consensus 98 --~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 98 --LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred --ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 677899999999999998743211 1123578888999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-ce--eeEeecCC-----CCeeEEEEccCC-CEEE-EEC-CeEEEEECCCCeeeE----
Q 008041 129 GSCIYSAGADGMVCEIDPLTG-SL--LGKFRAST-----KGISCMAVSSDG-KMLA-TAA-GQLKTFNCSDHKKMQ---- 193 (579)
Q Consensus 129 ~~~l~s~~~d~~v~iwd~~~~-~~--~~~~~~~~-----~~v~~l~~~p~g-~~l~-~~~-~~i~vwd~~~~~~~~---- 193 (579)
+..++++ .|-.|.+|++.-- +. +..++.+. .-|++..|+|.. +.++ +.+ |+|++.|++......
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 9988887 6888999998632 22 22233332 357888999953 3444 344 999999998543211
Q ss_pred Ee------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc--------------
Q 008041 194 KF------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA-------------- 247 (579)
Q Consensus 194 ~~------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-------------- 247 (579)
.| .+--..|..+.|+++|+|+++-. =-+|++||+...... +.+.+-+.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccc
Confidence 11 11124578899999999998742 378999999655432 11111111
Q ss_pred --eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 248 --VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
....| +|+ .++.++++|+..+..++|+...|.
T Consensus 329 IfdKFec-~~s-----g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFEC-SWS-----GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEE-EEc-----CCcceEecccccceEEEecCCCCc
Confidence 11222 333 688899999999999999966553
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.8e-11 Score=125.55 Aligned_cols=176 Identities=10% Similarity=0.053 Sum_probs=121.7
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.+||...+... .+ ..+...+.+..|+|||+.++.++. +..|++||+.+++... +....+...+..|+|||+.
T Consensus 185 ~l~i~D~~g~~~~-~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQ-TI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCce-Ee-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 5899998655443 33 346678999999999999888764 3469999998876543 3333445567899999998
Q ss_pred EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecC
Q 008041 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++.. + ..|++||+.+++. ..+..+........|+|||++++.++..++. |+++++.+++.. .+ +. .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~l-t~--~ 334 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RL-TF--Q 334 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Ee-ec--C
Confidence 7643 2 3799999988864 4555566566788999999998887644444 666676665422 11 11 1
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCceee
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL 287 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~ 287 (579)
........|+ |||++|+..+.++ .|.+||+.+++..
T Consensus 335 g~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 335 GNYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 1222345666 9999998876543 6999999877643
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.8e-11 Score=122.36 Aligned_cols=213 Identities=14% Similarity=0.095 Sum_probs=137.3
Q ss_pred CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC---CeEEEEEc
Q 008041 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV 103 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd~ 103 (579)
..|.+||...+. ...+..+...+....|+++ +..|+..+.. ..|++||+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence 368899986443 3334444444444445444 5666666533 35999999
Q ss_pred cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008041 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (579)
Q Consensus 104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-- 178 (579)
.+++... + ..+.+...+..|+|||+.++ +.+.+| .|++||+.+++.. .+..+.......+|+|||+.++.++
T Consensus 236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence 8887642 2 23344556889999999865 445555 5999999887654 4444555557789999999888765
Q ss_pred -C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeE
Q 008041 179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (579)
Q Consensus 179 -~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (579)
| .|+++|+.+++.. .+..+......++|+|||++++..+..++ .|.+||+.+++.. .+.+... ....
T Consensus 313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------~Lt~~~~-~~~p 384 (433)
T PRK04922 313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------TLTPGSL-DESP 384 (433)
T ss_pred CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------ECCCCCC-CCCc
Confidence 3 5888888776543 23223334457899999999887653332 6999999876532 1222211 1233
Q ss_pred EecCCcccCCCcEEEEEEcC---CeEEEEEcCC
Q 008041 254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (579)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 283 (579)
.|+ |||++|+..+.+ +.|++++...
T Consensus 385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 385 SFA-----PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred eEC-----CCCCEEEEEEecCCceEEEEEECCC
Confidence 565 999998877663 3677777754
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.3e-11 Score=123.09 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=117.6
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|...... ..+ ..+...+.+.+|+|||+.++..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus 177 ~L~~~D~dG~~~-~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQNA-QSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCCCc-eEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 577777754333 233 3467789999999999998877643 359999998887543 3333455678999999998
Q ss_pred EEEE-C--C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--CCccccceeeeeeecC
Q 008041 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~--~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~ 246 (579)
++.. + | .|+++|+.++. ...+..+........|+|||++++..+..++...+|.+. ++... .+ .. .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~l-t~--~ 326 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---RV-TF--T 326 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---EE-ec--C
Confidence 8754 3 4 46666666554 455655666667789999999988776445666666654 33211 11 11 1
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCceee
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL 287 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~ 287 (579)
........|+ |||++|+..+.++ .|.+||+.+++..
T Consensus 327 g~~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 327 GSYNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred CCCcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 1112234566 9999998877654 6999999887543
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.6e-11 Score=112.77 Aligned_cols=192 Identities=14% Similarity=0.263 Sum_probs=133.8
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEE
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCE 143 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~i 143 (579)
..+..-++|++. -..+++++.|..|++||-.. ++...+...-...|+|++|.|.+.. |+.|+..| |.+
T Consensus 98 ~~dlr~~aWhqH---------~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQH---------IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred hcceeeEeechh---------hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 345556777763 34578999999999999887 4433443344567999999996654 77776655 899
Q ss_pred EeCCCC----ce--------eeEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEE
Q 008041 144 IDPLTG----SL--------LGKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMT 206 (579)
Q Consensus 144 wd~~~~----~~--------~~~~~--~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 206 (579)
|..... .. .+.++ +| .+|+++.|.+||..+++++ ..|.|||..++..+.-.....+.++-+.
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEE
Confidence 975421 11 11122 23 4899999999999999998 6999999999887655544567889999
Q ss_pred EecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
|||||.+|+++. -|+..++|+....... .-... ... .+...+|+ |.|++|+-... |.=.+|.
T Consensus 246 wSPdgd~lfaAt-~davfrlw~e~q~wt~---erw~l-gsg-rvqtacWs-----pcGsfLLf~~s-gsp~lys 307 (445)
T KOG2139|consen 246 WSPDGDVLFAAT-CDAVFRLWQENQSWTK---ERWIL-GSG-RVQTACWS-----PCGSFLLFACS-GSPRLYS 307 (445)
T ss_pred EcCCCCEEEEec-ccceeeeehhccccee---cceec-cCC-ceeeeeec-----CCCCEEEEEEc-CCceEEE
Confidence 999999999987 5999999965443211 01122 222 56677787 99998766554 3334444
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.8e-11 Score=113.67 Aligned_cols=190 Identities=10% Similarity=0.095 Sum_probs=142.7
Q ss_pred CcEEEEEECCCeEEEEEccCCe-----EEEEecCCCCCCEEEEEEccCCCE-EEEEeCC--CcEEEEeCCCCceeeEeec
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQ-----LKWRLSDCHPGGVSAISFATHGSC-IYSAGAD--GMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d--~~v~iwd~~~~~~~~~~~~ 157 (579)
+..|++|..+|.+.+|....+. .+ .+. -..++..+.-++...+ +++|+.. ..+.+||+...+.+..-+.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~-~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLI-KLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccce-eee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence 6779999999999999998543 22 221 2256777777776655 5558877 7899999988755544332
Q ss_pred CC---------CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041 158 ST---------KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 158 ~~---------~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~ 223 (579)
-. -.++.+.|-|. ...|+++. +.+++||.+.+ +++.+|.--..+++++...|++++++++. .-+.
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~ 270 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQ 270 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccch
Confidence 11 25678899887 78899888 89999999976 46888887889999999999999999886 6899
Q ss_pred EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
+..||++.++... ..+..-...++.+... |.+.++++++.|..++|||+++.+.+.
T Consensus 271 l~~FD~r~~kl~g----~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 271 LAKFDLRGGKLLG----CGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred hheecccCceeec----cccCCccCCcceEEEc-----CCCceEEeeccceeEEEeecccchhhh
Confidence 9999999987541 1123333344444444 888999999999999999999866543
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=125.33 Aligned_cols=206 Identities=14% Similarity=0.250 Sum_probs=149.1
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEE
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEI 144 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iw 144 (579)
.+.|+.|... +.+|++|+.|-.+.|||+...+.+..+..+|...|.++.|-| +++.+++|..|..|+++
T Consensus 52 CVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 52 CVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred eecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3456666653 899999999999999999999988888899999999999998 55679999999999999
Q ss_pred eCCC----------CceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeE----------EeecCCCC
Q 008041 145 DPLT----------GSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQ----------KFSGHPGA 201 (579)
Q Consensus 145 d~~~----------~~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~----------~~~~h~~~ 201 (579)
|+.. ......+..|...|..|+..|++ +.+.+++ |+|+-||++...... .+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 13344577788999999999999 6788887 999999998742211 11112234
Q ss_pred EEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccc-------------cceeeeee--ec----------CceeEEeEEe
Q 008041 202 VRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQ-------------SASCVLAM--EH----------PAVFMDCRCI 255 (579)
Q Consensus 202 v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~-------------~~~~~~~~--~~----------~~~~~~~~~~ 255 (579)
..++.++|... +|++|+ .|-..++||.+...+. ...|+..+ .| -......+.|
T Consensus 203 lk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 56889998765 566665 6999999995432110 00111111 11 1122455666
Q ss_pred cCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
+ |+|.-|++.-..-.|++||+..++..
T Consensus 282 n-----pNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 282 N-----PNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred C-----CCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 6 99988887766669999998877654
No 233
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=9.2e-12 Score=115.17 Aligned_cols=163 Identities=14% Similarity=0.168 Sum_probs=126.4
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeEeec-CCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGKFRA-STKGISCMAVSSDGKMLATAA--GQLKTF 184 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~vw 184 (579)
.+|.+.|.++.|+.++++|++|+.|..+++|++.. .+++..... |...|.|++|...++.+.+|+ ++|.+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 57999999999999999999999999999999753 355555443 447899999999999999998 899999
Q ss_pred ECCCCeeeEEeecCC---CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCccc
Q 008041 185 NCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (579)
Q Consensus 185 d~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (579)
|+++.+.+..+. |. +.|..+..+|..+.|++.+ .++.|.+||.+..... ...+.....+... ..+.|.+
T Consensus 133 DiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~~-~~~~~~AN~~~~F-~t~~F~P---- 204 (609)
T KOG4227|consen 133 DIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQNP-ISLVLPANSGKNF-YTAEFHP---- 204 (609)
T ss_pred ecccceeeeeec-ccCcccceeecccCCCCceEEEEe-cCceEEEEeccCCCCC-CceeeecCCCccc-eeeeecC----
Confidence 999998887775 43 5899999999988888887 7999999999886522 1122222233333 3344441
Q ss_pred CCCcEEEEEEcCCeEEEEEcCCc
Q 008041 262 DAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
....+|++.+..|-+-+||....
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCceeEEeccccCCCCceeeccc
Confidence 34578888899999999997543
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=8e-11 Score=120.29 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=113.5
Q ss_pred CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEE--eCCCCceeeEeecCC
Q 008041 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iw--d~~~~~~~~~~~~~~ 159 (579)
++.|+..+.. ..|++||+.+++... + ....+.+.+..|+|||+.++ +.+.++...+| |+..+. ...+..+.
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 283 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS 283 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence 5566665532 349999999887642 2 22335567899999999876 45677765555 554444 44555555
Q ss_pred CCeeEEEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008041 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~ 232 (579)
.......|+|||+.++..+ | .|+.+++.+++.. .+..+........|+|||++++..+..++ .|.+||+.++
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 5567789999999888655 4 4555555555432 22222233446789999999987763222 6999999877
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEc
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYG 281 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~ 281 (579)
+.. .+.... ......|+ |||++|+..+.++ .+++.+.
T Consensus 363 ~~~------~lt~~~-~~~~p~~s-----pdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 363 QVT------ALTDTT-RDESPSFA-----PNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CeE------EccCCC-CccCceEC-----CCCCEEEEEEecCCCEEEEEEEC
Confidence 532 111111 12344566 9999988887644 3445454
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.4e-12 Score=122.25 Aligned_cols=207 Identities=18% Similarity=0.338 Sum_probs=144.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+++-|+++ +|+.||.+|++||.|-++.|||.-..+.+..+. .||.. .+-|..|.|...
T Consensus 49 H~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------TgHta-NIFsvKFvP~tn--- 106 (758)
T KOG1310|consen 49 HTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------TGHTA-NIFSVKFVPYTN--- 106 (758)
T ss_pred ccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeee----------------ccccc-ceeEEeeeccCC---
Confidence 45778666 999999999999999999999998888777663 24433 233555555442
Q ss_pred cccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS- 150 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~- 150 (579)
+.++++|..|..|++||+... +........|...|.-++..|++ +.|.+++.||+++.+|++...
T Consensus 107 ----nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 107 ----NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ----CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 678999999999999999851 22223446799999999999998 679999999999999998632
Q ss_pred eeeE---------eecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC--------C----------eeeEEe-ecCC
Q 008041 151 LLGK---------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD--------H----------KKMQKF-SGHP 199 (579)
Q Consensus 151 ~~~~---------~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~--------~----------~~~~~~-~~h~ 199 (579)
+... +...--...|+.++|... +|++|+ --.++||.+. + .++..| ++|.
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 1111 111112567999999665 556665 3689999431 1 122223 2332
Q ss_pred --------C---CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 200 --------G---AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 200 --------~---~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
. -++-+.|+|+|..|+..= ....|+++|+..++..
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP 308 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence 1 145678999998776653 3457999999887643
No 236
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=4.7e-12 Score=120.49 Aligned_cols=275 Identities=12% Similarity=0.093 Sum_probs=189.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCC-CCcee--eEeecCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPL-TGSLL--GKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~-~~~~~--~~~~~~~~ 160 (579)
+..+++|+.|-.|.+||...+.....+..+|...|....|-|. .+.+++++.||.|++=.+. ++.+. ..+..|.+
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g 233 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG 233 (559)
T ss_pred CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence 8899999999999999999999888888999999999999883 4569999999999987654 33332 33566889
Q ss_pred CeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEe---ecCCC---CEEEEEEecCCC-EEEEEecCCCeEEEEEcC
Q 008041 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF---SGHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD 230 (579)
Q Consensus 161 ~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~---~~h~~---~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~ 230 (579)
+|.-++.-|+.. .|.+++ +.+.-+|++++..-..+ ..+.. ....++..|... .+++++ .|..+++||.+
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R 312 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR 312 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence 999999999765 455555 78888999887553333 22333 456788888776 566666 79999999987
Q ss_pred CCcccc------ceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC--Cce----------eecc-c
Q 008041 231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ--NIE----------ELRN-T 290 (579)
Q Consensus 231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~----------~~~~-~ 290 (579)
.-.... .-|. .-.......|.++.++ .++.-|.+.-.|-.|++|+-. .|. .... .
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 654321 0000 0111334567788887 678888888888899999522 120 0111 2
Q ss_pred CCee--EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc
Q 008041 291 KATK--ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (579)
Q Consensus 291 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~ 368 (579)
++++ ..+.....|.|... ++++|+..|.|++|+ ......+.-+.+...-|.|+--.|-=..| +|+
T Consensus 388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~--------K~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS 454 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWD--------KKTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS 454 (559)
T ss_pred cccccccccceeeeccCccc----eEEecCccceEEEEe--------cchhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence 2221 12344445666555 888898877666543 22333333444544467777777877888 999
Q ss_pred cceecccceee
Q 008041 369 SLLKSKRGRYV 379 (579)
Q Consensus 369 s~d~~~~~w~~ 379 (579)
+-|..||+|.=
T Consensus 455 Gid~DVKIWTP 465 (559)
T KOG1334|consen 455 GIDHDVKIWTP 465 (559)
T ss_pred CCccceeeecC
Confidence 99999999953
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=2.4e-09 Score=106.22 Aligned_cols=277 Identities=14% Similarity=0.160 Sum_probs=165.5
Q ss_pred EEEEECC----CeEEEEEc--cCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCC--c--eeeE
Q 008041 89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK 154 (579)
Q Consensus 89 l~~~~~~----g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d~~v~iwd~~~~--~--~~~~ 154 (579)
+++|+.. +.|++|++ .++++...-...-......++++|++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566665 57888888 5555432111123355778899999999999876 568988887653 3 3334
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE--eec-----------CCCCEEEEEEecCCCEEEEE
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--FSG-----------HPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~~~~--~~~-----------h~~~v~~l~~s~~~~~l~s~ 217 (579)
..........++++|++++++++. |.|.++++.. +..... ... ......++.|+|+|+++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 443455778899999999999986 8999999987 433222 111 12447899999999999888
Q ss_pred ecCCCeEEEEEcCCCccc-cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC--Ccee--ecccC
Q 008041 218 AVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIEE--LRNTK 291 (579)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~~--~~~~~ 291 (579)
......|.+|++...... ........ ....-.+.+.|+ |+++++.+.++ ++.|.+|++. ++.. +....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 766778999999876521 11111222 233334566676 99999888876 7899999887 4321 11111
Q ss_pred Ce----e-EEeeeccCCcccccccchhhhhcccc-ceecCCceEEEEEeCC-CCCceeEEEecCCCCcEEEeecCCccee
Q 008041 292 AT----K-ILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL 364 (579)
Q Consensus 292 ~~----~-~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (579)
.. . ........++++++ +++++... +.+ .++..+.. ......+.+......-..++++|||++|
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI-----~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSI-----SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEE-----EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred eccccccccCCceeEEEecCCC----EEEEEeccCCEE-----EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 00 0 00111112466666 55554432 111 11122111 1112223333333347899999999999
Q ss_pred eccccceecccceeee
Q 008041 365 PMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 365 ~~s~s~d~~~~~w~~~ 380 (579)
.++...++.+.++++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 6666677888888874
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-10 Score=122.13 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=127.4
Q ss_pred CcEEEEEECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------ce
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SL 151 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-------~~ 151 (579)
+.++++|+.||+|++||.+.-. ...++ .....++.++.+.+.++.++.++.||.|++.++... .+
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence 5899999999999999987421 11122 224578999999999999999999999999998652 11
Q ss_pred eeEeecCC-C-CeeEEEEcc-CCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041 152 LGKFRAST-K-GISCMAVSS-DGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 152 ~~~~~~~~-~-~v~~l~~~p-~g~-~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~ 223 (579)
.+....+. + -|..-++.. ++. .++.+. +.|..||+++.....++ ....+.|++++.+|.+.++++|. ..|.
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-s~G~ 1218 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQ 1218 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-CCce
Confidence 22222222 2 233333433 233 444444 89999999987655444 33457899999999999999987 6899
Q ss_pred EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCce
Q 008041 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIE 285 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 285 (579)
+-+||++-+... +.+..++...... ++.+. +.|.....++++ ..+.|.+|++.+|.
T Consensus 1219 l~lWDLRF~~~i---~sw~~P~~~~i~~-v~~~~--~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPI---LSWEHPARAPIRH-VWLCP--TYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEEEEeecCcee---ecccCcccCCcce-EEeec--cCCCCceEEEecccCCCceeeeecccCc
Confidence 999999988644 2333333322222 22221 114445555554 47899999998884
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=4.2e-12 Score=120.14 Aligned_cols=187 Identities=18% Similarity=0.289 Sum_probs=147.5
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.|+++ .|=.+.+++|.+- ...+.|||- .|..++-++.+. .+..+.|-|.
T Consensus 172 tv~Dv--~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~~-~v~rLeFLPy-------------------------- 220 (545)
T KOG1272|consen 172 TVRDV--TFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRHI-RVARLEFLPY-------------------------- 220 (545)
T ss_pred hhhhh--hhhcchHHHHhhh-hceEEEecC-CCcEEeehhhcC-chhhhcccch--------------------------
Confidence 46566 7888888888776 457899995 466666555332 2222233222
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
.-+|++++..|-++.-|+.+|+.+..+. .-.+.+..++-+|-+..+-.|...|+|.+|.....+++..+.+|.++|.+
T Consensus 221 -HfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s 298 (545)
T KOG1272|consen 221 -HFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS 298 (545)
T ss_pred -hheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence 5568888889999999999999987774 35678889999998889999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
|++.|+|+++++++ ..++|||++....+.++.. ..+...++||..| .|+ .| ....|.+|.
T Consensus 299 iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 299 IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LS-YGDHVQIWK 360 (545)
T ss_pred EEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-ee-cCCeeeeeh
Confidence 99999999999999 8999999999877766654 5667888998776 333 34 456799995
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=112.02 Aligned_cols=219 Identities=15% Similarity=0.092 Sum_probs=153.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC
Q 008041 122 AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH 198 (579)
Q Consensus 122 ~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h 198 (579)
-.+|+|+|+++++++.- ++.+-|..+-+..+.|.. -..|..+.|..|.-+++++. +.|.+|++...+-..++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 45799999999999755 788889887776666554 34677899999988888876 69999999999888888888
Q ss_pred CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe---
Q 008041 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--- 275 (579)
Q Consensus 199 ~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--- 275 (579)
..++.++.|||||+.++..+.-|-.|.+|++.+.+. ..+.++...+....|. |||++.+..+.-..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------~~~~~pK~~~kg~~f~-----~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------YLLPHPKTNVKGYAFH-----PDGQFCAILSRRDCKDY 159 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEecccee------EEecccccCceeEEEC-----CCCceeeeeecccHHHH
Confidence 899999999999988877777788999999998753 3456777777888887 99999888776322
Q ss_pred EEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC-CCcEE
Q 008041 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDIN 354 (579)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~ 354 (579)
+.++..+....++..+-...... |+--..||..+..+.+.+.-. .+..|. -.+..
T Consensus 160 v~i~~c~~W~ll~~f~~dT~Dlt----------------------gieWsPdg~~laVwd~~Leyk--v~aYe~~lG~k~ 215 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLT----------------------GIEWSPDGNWLAVWDNVLEYK--VYAYERGLGLKF 215 (447)
T ss_pred HHHHhhHHHHHHHhcCCCccccc----------------------CceECCCCcEEEEecchhhhe--eeeeeeccceeE
Confidence 22222222333333332222211 222223444444443322111 112232 24778
Q ss_pred EeecCCcceeeccccceeccccee
Q 008041 355 LNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 355 ~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
+.|||.|++| +.||.|+.+|+-+
T Consensus 216 v~wsP~~qfl-avGsyD~~lrvln 238 (447)
T KOG4497|consen 216 VEWSPCNQFL-AVGSYDQMLRVLN 238 (447)
T ss_pred EEeccccceE-Eeeccchhhhhhc
Confidence 8999999999 9999999998754
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.5e-09 Score=97.04 Aligned_cols=242 Identities=15% Similarity=0.205 Sum_probs=156.0
Q ss_pred EEEccCCCEEEEEeC---CCcEEEEECCC--CeEEEE--eccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 11 TSFSPALDYFAICSG---DARIKIWDTLK--GQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 11 ~~fspdg~~lasg~~---dg~i~vwd~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
++|+|++++|.++.. +|.|..|.++. |++... ...... ..| ....+++
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~-------------------~p~--yvsvd~~---- 99 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS-------------------PPC--YVSVDED---- 99 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC-------------------CCe--EEEECCC----
Confidence 399999999988865 47777776664 554321 111110 101 1122222
Q ss_pred cCCcEEEEEEC-CCeEEEEEccC-CeEEE--EecCCCCCC----------EEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 008041 84 LGSSLLVLGTG-GGDVLALAVSA-GQLKW--RLSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLT 148 (579)
Q Consensus 84 ~~~~~l~~~~~-~g~i~iwd~~~-~~~~~--~~~~~h~~~----------V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~ 148 (579)
+.+++++.. .|.|.++-++. |.+.. .. ..|.++ +....|.|++++++++.. -..|.+|++..
T Consensus 100 --g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 100 --GRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred --CCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 666666664 47799999976 33211 11 135544 889999999999988752 33599999998
Q ss_pred CceeeE---eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-eeeEEeec---------CCCCEEEEEEecCCC
Q 008041 149 GSLLGK---FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGK 212 (579)
Q Consensus 149 ~~~~~~---~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~-~~~~~~~~---------h~~~v~~l~~s~~~~ 212 (579)
|+.... .-........|.|+|++++..... ++|-+|..... ..+..++. .......|..++||+
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 764332 112345779999999999998887 89999988773 22333321 134567889999999
Q ss_pred EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-eEEEEEc--CCcee
Q 008041 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG--QNIEE 286 (579)
Q Consensus 213 ~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~--~~~~~ 286 (579)
+|.++-.....|.+|.+...... ...+..........+...++ ++|++|+++.+++ .|.+|.. ++|+.
T Consensus 257 FLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 257 FLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 99988766668888887765322 11222223334445556666 9999999998854 7888854 44443
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=1.7e-09 Score=111.11 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=118.9
Q ss_pred CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEeCCCCceeeEeecCC
Q 008041 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~d~--~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..++.++.. ..|++||+.+++.... ..+...+.+++|+|||+.|+. .+.++ .|++||+.++... .+..+.
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 277 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP 277 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence 6666666543 3699999998865422 235566778999999998764 44444 5899998877543 344444
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC---eEEEEEcCC
Q 008041 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~---~i~vwd~~~ 231 (579)
.......|+|||+.|+..+ ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++ .++ .|.+||+.+
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC
Confidence 4556789999999887654 2788999887764 34444556677889999999998877 454 788889877
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEE
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd 280 (579)
+... . +..... .....|+ |+|++|+..+.++ .+++++
T Consensus 356 ~~~~---~---l~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 356 GGER---V---LTDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEE
Confidence 5422 1 111111 1223455 9999988887754 344444
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.9e-09 Score=109.57 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=115.4
Q ss_pred EEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEeCCCC---ceeeEeecCC
Q 008041 90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG----MVCEIDPLTG---SLLGKFRAST 159 (579)
Q Consensus 90 ~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~----~v~iwd~~~~---~~~~~~~~~~ 159 (579)
++...+| .|++.++.+++..... ...+......|+|||+.|+..+. +| .+..|++..+ +.........
T Consensus 203 y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 3444444 4888999887653222 23445567899999998876553 22 3444776653 3333333333
Q ss_pred CCeeEEEEccCCCEEEEEC---C--eEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCC
Q 008041 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---~--~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~ 231 (579)
......+|+|||+.|+..+ | .|+++++.. +.....+..+...+....|+|||++|+..+..+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3446789999999887654 4 466666642 333444555556677899999999988776433 3699999988
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---CCeEEEEEcCCcee
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE 286 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~ 286 (579)
++.. .+...........|+ |||++|+..+. .+.|+++|+.+++.
T Consensus 361 g~~~------~Lt~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDY------QLTTSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeE------EccCCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 7643 121222223345566 99998876543 34788888876654
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=9.5e-10 Score=112.96 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=120.7
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|...+... .+ ..+...+.+..|+|||++++.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+.
T Consensus 171 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQ-TI-TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCE-Ee-ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4888888654432 33 2466679999999999998877643 479999998886543 3334556678999999997
Q ss_pred EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~-~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+.. + ..|++||+.+++. ..+..+........|+|||++|+.++..++ .|++|++.+++.. .+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~ 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence 7654 3 3699999987754 344445555567899999998887664333 5777787765422 12212
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCce
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~ 285 (579)
........|+ |+|++|+.++.++ .|.+||+.++.
T Consensus 321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2223344566 9999999988776 88999987754
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.6e-09 Score=111.18 Aligned_cols=175 Identities=11% Similarity=0.021 Sum_probs=114.6
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|....... .+ ..+...+.+..|+|||+.++..+. ++ .|++||+.+++... +....+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~~~-~l-~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQ-ML-LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCce-Ee-ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 4777787665442 22 345678899999999999877653 33 58899998876533 2222334457899999998
Q ss_pred EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
|+... | .|+++|+.+++. ..+..+........|+|||++++..+..++ .|+++|+.+++.. .+ +. .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~---~L-t~--~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS---RL-TF--E 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EE-ec--C
Confidence 87643 3 689999988764 445556566678899999998887764444 4666677665432 11 11 1
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEc-CC--eEEEEEcCCcee
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIEE 286 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~ 286 (579)
........|+ |||++|+..+. ++ .|.++|+.+++.
T Consensus 349 g~~~~~~~~S-----pDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 349 GEQNLGGSIT-----PDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCCCcCeeEC-----CCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 1111223555 99999887765 34 566678777653
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.9e-09 Score=110.90 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=119.0
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
.|.++|...+... .+ ..+...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAV-TL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCce-EE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 3788888765543 33 2466789999999999998776543 369999998886543 3333345567899999998
Q ss_pred EEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecC
Q 008041 174 LATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 174 l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
++... ..|++||+.+++. ..+..+........|+|||+.++..+..++ .|+++++.+++.. .+ .. .
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~l-t~--~ 329 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RV-TF--V 329 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Ee-ec--C
Confidence 87532 3799999988764 345556666677899999998877764444 5777787766532 11 11 1
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcC-C--eEEEEEcCCcee
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE 286 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~ 286 (579)
........|+ |+|++|+..+.+ | .|.+||+.+++.
T Consensus 330 ~~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 330 GNYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 1112234555 999999887653 3 588899887754
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.4e-08 Score=94.39 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=168.8
Q ss_pred EEEEECC----CeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCC--Ccee--eEe
Q 008041 89 LVLGTGG----GDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLT--GSLL--GKF 155 (579)
Q Consensus 89 l~~~~~~----g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~v~iwd~~~--~~~~--~~~ 155 (579)
+++|+.. .-|++|++.+. +.-....-.+.+.++-++|+|++++|+++..+ |.|..|.+.. |+.. ...
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 4455543 44999998843 32211123567889999999999999988654 6677766653 5432 222
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCC----------EEEEEEecCCCEEEEEec
Q 008041 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGA----------VRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~--~~~~~~h~~~----------v~~l~~s~~~~~l~s~~~ 219 (579)
.....+.+.++++++|++++++. |.|.++-++. |.. ...+..|.+. +....|.|+++++++..-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 22334558999999999999998 8999999865 432 1122335544 888999999999999876
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCc----eeecccCCee
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI----EELRNTKATK 294 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~----~~~~~~~~~~ 294 (579)
.-..|.+|++..++....... .+ .+..-.+-+.|. |++++..+.++ +++|.+|..+.. +.++.+....
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~-~v-~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPA-EV-KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceEEEEEcccCcccccccc-cc-CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 667899999997765432221 12 333334556676 99999999887 999999987763 2222211110
Q ss_pred -----EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCC---CceeEEEecCCCCcEEEeecCCcceeec
Q 008041 295 -----ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL---KPSFQKILVNSGEDINLNCSQDGVLLPM 366 (579)
Q Consensus 295 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (579)
....+....+++++ +++++..- .+ .+.+..=... -..++...-+...-....++++|++|.+
T Consensus 238 ~dF~g~~~~aaIhis~dGr----FLYasNRg-----~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGR----FLYASNRG-----HD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred cccCCCCceeEEEECCCCC----EEEEecCC-----CC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 11111112344544 44444331 01 1111110111 1112222224444678899999999966
Q ss_pred cccceecccceeeee
Q 008041 367 SQSLLKSKRGRYVQN 381 (579)
Q Consensus 367 s~s~d~~~~~w~~~~ 381 (579)
+.-++.++.+..+.+
T Consensus 308 a~q~sd~i~vf~~d~ 322 (346)
T COG2706 308 ANQKSDNITVFERDK 322 (346)
T ss_pred EccCCCcEEEEEEcC
Confidence 666667788887753
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=1.8e-10 Score=119.74 Aligned_cols=191 Identities=11% Similarity=0.131 Sum_probs=148.1
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
.-+...++.+..+..+.+||...+.......+... ..-++++.|.... ..-++++|+
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er----------------~~l~~~~~~g~s~-------~~~~i~~gs 152 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER----------------CTLYSSLIIGDSA-------EELYIASGS 152 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhcCCCce----------------EEEEeEEEEeccC-------cEEEEEecc
Confidence 34556788888888999999988877665542211 1122333333211 156789999
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCC
Q 008041 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGK 172 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~ 172 (579)
.-|.|.+|++...+... .+.+|.+.|.++.|+-||++++++|.|.++++|++.+.+... +.-+|...|..+.|+|+
T Consensus 153 v~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred ccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 99999999998544433 347999999999999999999999999999999999988776 66679999999999998
Q ss_pred EEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 173 ~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+++++ -+.++|+.. ++.+.++.+|. ..+..++..++....++++ .|+.+++|++...
T Consensus 230 ~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhcc
Confidence 788887 799999754 45556788886 4688899988888888887 7999999998654
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=5.4e-09 Score=107.53 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=116.4
Q ss_pred CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCC
Q 008041 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~ 159 (579)
++.|+..+.+ ..|++||+.+++... + ....+.+....|+|||+.++ +.+.+| .|++||+.+++.. .+..+.
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 5556555433 359999999887642 2 22334456789999999876 444454 6888899877654 344455
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008041 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~ 232 (579)
.......|+|||+.++..+ ..|+++|+.+++... +...........|+|||++++..+..++ .|.+||+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 5567789999999887655 368888988776432 2212223345789999999988764343 5788898876
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-C--eEEEEEcC
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ 282 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~ 282 (579)
+.. . +...... ....|+ |||++++..+.+ | .+++++..
T Consensus 366 ~~~---~---lt~~~~~-~~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 SVR---I---LTDTSLD-ESPSVA-----PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CEE---E---ccCCCCC-CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 532 1 1111111 123455 999998877653 3 46666664
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=2.5e-10 Score=102.32 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=144.9
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
++++.|++.|.-++++..+|.+.+-+-..+.... .++.|..+.....|+.. +
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~ 177 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E 177 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence 5788999999999999999999865555554443 67777766665555433 2
Q ss_pred CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceeeEeecCCCCe
Q 008041 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLT-GSLLGKFRASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~v 162 (579)
.+++++|+.||.+..||++ .++.+++-.+-|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+.|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV 256 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV 256 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence 6889999999999999999 56677665567999999999887 567899999999999999883 55554433 34789
Q ss_pred eEEEEccCC--CEEEEEC-CeEEEEECCCC--e---eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE-EEEcCCC
Q 008041 163 SCMAVSSDG--KMLATAA-GQLKTFNCSDH--K---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV 232 (579)
Q Consensus 163 ~~l~~~p~g--~~l~~~~-~~i~vwd~~~~--~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~-vwd~~~~ 232 (579)
..+.++|.- .+++++. +-.+|.+.+.+ + .....+.|.+-+..-.|.....++++++..|+.++ +|-.-++
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 999999953 3444444 55666666543 2 34445677777777777554557888888888855 7765444
No 251
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=3.5e-11 Score=120.01 Aligned_cols=203 Identities=12% Similarity=0.152 Sum_probs=140.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCC-eEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+++..+ ..+|.|+-+|.++.-|. .|-|+... ....-+. |. ....+....|.+...
T Consensus 25 ~~~~a~--si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~----------------tpw~vad~qws~h~a---- 80 (1081)
T KOG0309|consen 25 GGFNAV--SINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HI----------------TPWQVADVQWSPHPA---- 80 (1081)
T ss_pred Ccccce--eeccccchhhhhhhcCe-EEEeccCCCCCceeee-cc----------------CcchhcceecccCCC----
Confidence 455444 78999999998887764 45565432 2211111 00 012233444544332
Q ss_pred ccCCcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRAS 158 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~-~~~~~~~~~ 158 (579)
..+-++.+...+-.+|++... ..+.-++.+|...|+++.|+|+.. .+++++.|-.|..||+++. .++..+..-
T Consensus 81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 345567777777889998643 344455679999999999999665 5889999999999999875 456666655
Q ss_pred CCCeeEEEEcc-CCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCcc
Q 008041 159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p-~g~~l~~~~-~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
......++|+- ++..+|+.. +.|++||.+.| .++..+++|...|..+.|..-. ..+.+++ .|++|+.||......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTT 236 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeeccccccc
Confidence 56678899987 455566655 78999999975 5688889999999999997532 2455665 799999999887653
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2e-09 Score=104.82 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=91.0
Q ss_pred cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
++++.++....+...+. ..++|.++.|+|+|+-++++. ..+.+||++. +.+..|. .++=+++-|+|.|++++
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~--egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP--EGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC--CCCccceEECCCCCEEE
Confidence 45555554222222222 467999999999999888876 5899999864 4555553 56778899999999999
Q ss_pred EEecCC--CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc------CCeEEEEEcC
Q 008041 216 SSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQ 282 (579)
Q Consensus 216 s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~ 282 (579)
.+|.++ |.+-+||..+.+.. ...... ..+...|+ |||.++++++. |+.++||+..
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a~--~tt~~eW~-----PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKAA--NTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EeecCCCCCceEEEeccchhhc-----cccccC--CceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEec
Confidence 988643 68999999986543 232222 23455666 99999999875 7889999864
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=2.8e-10 Score=110.78 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=142.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+|+.-.--|.+++....|.-++++.|+.+..|....+.++.+..++. ..+|++
T Consensus 140 ~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla~ 192 (703)
T KOG2321|consen 140 KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLAC 192 (703)
T ss_pred cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc---------------------------cceEEe
Confidence 45443322333444456788899999988877755555544444333 788999
Q ss_pred EECCCeEEEEEccCCeEEEEec-----CCCCC-----CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCC
Q 008041 92 GTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTK 160 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~-----~~h~~-----~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~ 160 (579)
|+.+|.|-.||.++...+..+. ..|.+ .|+++.|+.+|-.+++|+.+|.|.+||++..+++..-. +..-
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL 272 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc
Confidence 9999999999999876554432 22333 39999999999999999999999999999888765432 2233
Q ss_pred CeeEEEEccC--CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 161 GISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 161 ~v~~l~~~p~--g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
+|..+.|.+. ++.+++.. ..++|||-.+|+....+. ....++.+++-|++-.++++- ++..+..|-+..-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~L 345 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPSL 345 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEec-CCCcceeEEcccc
Confidence 8999999875 56788888 899999999999887776 345699999999998888875 5666666665543
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=6.7e-09 Score=106.53 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=112.7
Q ss_pred CcEEEEEEC-CC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCCc--EEEEeCCCCceeeEeecCC
Q 008041 86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~-~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~d~~--v~iwd~~~~~~~~~~~~~~ 159 (579)
+..|+..+. ++ .|++||+.+++..... ...+......|+|||+.|+. .+.++. |+++|+.+++.. .+..+.
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~ 305 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR 305 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence 555655543 33 5999999888753221 12233457899999998765 455664 888898877643 344455
Q ss_pred CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008041 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~ 232 (579)
......+|+|||+.++..+ ..|+++|+.+++... +..+........|+|||++++..+..++ .|.++|+.++
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5667889999999887655 368888988776433 2212222345789999999888764444 4555677766
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CC--eEEEEEcC
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQ 282 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~ 282 (579)
+.. . +..... .....|+ |||++|+..+. +| .+++++.+
T Consensus 385 ~~~---~---lt~~~~-d~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 385 AMQ---V---LTSTRL-DESPSVA-----PNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 432 1 111111 1112455 99998877665 33 36677763
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.21 E-value=1.3e-08 Score=98.22 Aligned_cols=327 Identities=12% Similarity=0.034 Sum_probs=186.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|||.|.||++.... .|.+|+...+..+..+.. ..+....|++. + .--..|....-. ....-+
T Consensus 37 ~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~---~-----kYL~tw~~~pi~----~pe~e~ 101 (561)
T COG5354 37 YVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPN---E-----KYLVTWSREPII----EPEIEI 101 (561)
T ss_pred heeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcc---c-----ceeeeeccCCcc----Chhhcc
Confidence 34999999999987765 489998877765555542 22333334433 0 011122211100 000001
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCC--EE-EEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eEeecC-CCCeeE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRAS-TKGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~-~~~v~~ 164 (579)
.=-+.+..+.+||+.+|..+..+. +-..+ .+ -+.|+.+..+++-. -...++++++ ++... .-+..- ...|..
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred CCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceee
Confidence 111223369999999999987663 33333 44 67888888876544 2345899997 33221 112211 247888
Q ss_pred EEEccCCC--EEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec----------CCCeEE
Q 008041 165 MAVSSDGK--MLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------GERYIA 225 (579)
Q Consensus 165 l~~~p~g~--~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------~d~~i~ 225 (579)
..|+|.|+ .|+.=. +.+++|.+..+..+.+-.-....=..+.|.+.|++++.-.. ++..++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 89999654 344321 68999999876665443222222246788888887755321 234578
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCC
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (579)
++++...... ... .....+...+|. |.++.+++.+ .+-.+.+||++.. ......+.... ...|
T Consensus 259 l~~~~e~~i~-----V~~-~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rN---T~~f 323 (561)
T COG5354 259 LLRITERSIP-----VEK-DLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRN---TIFF 323 (561)
T ss_pred EEeecccccc-----eec-cccccceeeeec-----ccCCceeEEecccccceeecccccc-eEEecCCcccc---cccc
Confidence 8888754322 111 334455667776 8888777666 5788999998765 22222221111 1236
Q ss_pred cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc--c----ceecccce
Q 008041 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ--S----LLKSKRGR 377 (579)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~--s----~d~~~~~w 377 (579)
+|..+ +|+.+.++.. .|.+.+..-...+.+...+.+. ...-+.|||||+|+ .+. | .|..+++|
T Consensus 324 sp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 324 SPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred cCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccCcceEEE
Confidence 77777 7888888753 3444444332222222233322 23456699999987 332 2 38899999
Q ss_pred eee
Q 008041 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
++.
T Consensus 393 ~v~ 395 (561)
T COG5354 393 DVY 395 (561)
T ss_pred Eec
Confidence 995
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=6.8e-09 Score=105.64 Aligned_cols=197 Identities=16% Similarity=0.133 Sum_probs=119.1
Q ss_pred eEEEEccCCCE--EEEEe-CCC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDY--FAICS-GDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~--lasg~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
+.-+|||||+. ++..+ .+| .|.+.++.+|+.... ....+... ...|.|.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~------------------~p~wSPD------- 241 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQL------------------MPTFSPR------- 241 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCcc------------------ceEECCC-------
Confidence 45589999975 33233 343 577778887764332 21111111 2334433
Q ss_pred cCCcEEEEEE-CCC--eEEE--EEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEE--eCCC-Ccee
Q 008041 84 LGSSLLVLGT-GGG--DVLA--LAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL 152 (579)
Q Consensus 84 ~~~~~l~~~~-~~g--~i~i--wd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iw--d~~~-~~~~ 152 (579)
+..|+..+ .+| .+++ |++..+. ....+..++.......+|+|||+.|+..+ .+|...+| ++.. +...
T Consensus 242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 55555544 233 3444 6766531 22233333334456789999999877665 46654444 5432 2334
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEE
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA 225 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~--d~~i~ 225 (579)
..+..+...+....|+|||+.|+... ..|++||+.+++.. .+......+....|+|||+.|+..+.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 44554555678899999999888764 47999999988654 343334456789999999988765432 34688
Q ss_pred EEEcCCCcc
Q 008041 226 LWRTDGVKK 234 (579)
Q Consensus 226 vwd~~~~~~ 234 (579)
+|++..++.
T Consensus 399 ~vdl~~g~~ 407 (428)
T PRK01029 399 LISLITKKT 407 (428)
T ss_pred EEECCCCCE
Confidence 888877653
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.8e-09 Score=102.31 Aligned_cols=197 Identities=19% Similarity=0.343 Sum_probs=135.6
Q ss_pred CcccceEEEEccCC--CEEEE-----EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041 4 SNIRDILTSFSPAL--DYFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 4 ~~V~~l~~~fspdg--~~las-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
..|..+ ++||.+ .++|+ +|.-+.|+||..-.+.... .+.+ ++....+...+.|...
T Consensus 166 ~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~--------ksFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 166 SGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVAN--------KSFFKADKVQMKWNKL 228 (566)
T ss_pred cceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhh--------ccccccceeEEEeccC
Confidence 345444 777764 34553 3445678888765222111 1111 1222334456777654
Q ss_pred ccccccccCCcEEEEEECC-----------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 008041 77 DRKKKRKLGSSLLVLGTGG-----------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCE 143 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~-----------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~d~~v~i 143 (579)
. ..+|++++.+ .++++++++...+...+ ...++|.++.|+|+|+.|+++ -.-..+.+
T Consensus 229 g--------t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 229 G--------TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred C--------ceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 3 4455555432 23888888855555444 357899999999999887655 45668999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008041 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
||++ ++.+..|. .++-+++-|+|.|++++.++ |.|-+||+.+.+++..+..-. -+-+.|+|||++|+++.
T Consensus 299 fnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 299 FNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred EcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEe
Confidence 9974 77766664 56778999999999999987 799999999998888887543 34579999999999987
Q ss_pred cC-----CCeEEEEEcCCC
Q 008041 219 VG-----ERYIALWRTDGV 232 (579)
Q Consensus 219 ~~-----d~~i~vwd~~~~ 232 (579)
.. |+.++||+....
T Consensus 374 TaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccEEecCCeEEEEecCc
Confidence 43 678999998765
No 258
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=2.7e-08 Score=100.60 Aligned_cols=224 Identities=15% Similarity=0.135 Sum_probs=142.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+..+++++.+|.|.-+|..+|+.+..+........ .+ . ..+..+++++.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-----~p------------~------------v~~~~v~v~~~~ 114 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-----GV------------G------------ADGGLVFVGTEK 114 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-----ce------------E------------EcCCEEEEEcCC
Confidence 356788888899999999999998877653221000 00 0 015678899999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~ 170 (579)
|.++.+|..+|+.+++.... +.+.+.-.. .+..++.++.++.++.||..+|+.+..+......+ .+..+. +
T Consensus 115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D 190 (377)
T ss_pred CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence 99999999999998776322 223221111 34567778889999999999999887765433211 111222 3
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeecCC----CC------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GA------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~----~~------v-~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
+ .++.+. +.+..+|.++|+.+.+..... .. + ....+ .+..++.++ .++.+..||..+++..
T Consensus 191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~-- 264 (377)
T TIGR03300 191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL-- 264 (377)
T ss_pred C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence 4 444544 899999999998765432110 00 0 11112 234666666 6899999999888643
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
....... ..... .++..+++++.||.++.+|..+++.+...
T Consensus 265 ---W~~~~~~--~~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 265 ---WKRDASS--YQGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---EeeccCC--ccCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 2222111 01111 24577888889999999999999877544
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=1.6e-08 Score=97.62 Aligned_cols=306 Identities=13% Similarity=0.137 Sum_probs=184.2
Q ss_pred cccceEEEEccCCCEEEEEeCCC---------------cEEEEECCCCeEEEEeccCccccccccccccccccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (579)
.|+.+ .|||+++||.+-+..+ .+.|||..+|..+..|.....+ .....
T Consensus 73 ~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------~~~Wp 135 (561)
T COG5354 73 DVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------YLGWP 135 (561)
T ss_pred Cceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------ccccc
Confidence 46555 8999999999876433 4999999999999888654322 01122
Q ss_pred eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCE--EEE-----EeCCCcE
Q 008041 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSC--IYS-----AGADGMV 141 (579)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~--l~s-----~~~d~~v 141 (579)
.+.|...+ .+++ --....++|+++ ++... ..+..-....|....|+|.++. |+. .+.++++
T Consensus 136 ~~k~s~~D---------~y~A-Rvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 136 VLKFSIDD---------KYVA-RVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred eeeeeecc---------hhhh-hhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 33343332 1222 124456899997 43321 1111112356889999996543 443 3578899
Q ss_pred EEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEe
Q 008041 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (579)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s 208 (579)
++|.+..++.+.+-.-.+..=..+.|++.|+++++-. ..+++++++... +....+..++|....|.
T Consensus 205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWE 283 (561)
T ss_pred EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeec
Confidence 9999987776655322222335788999998876521 478899887433 33333668999999999
Q ss_pred cCCCEEEEEe-cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCc
Q 008041 209 DNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNI 284 (579)
Q Consensus 209 ~~~~~l~s~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 284 (579)
|.++.+++.+ ..+-.+.++|++..- .+. .+...-....|+ |.+++++.++.| |.+.+||....
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~--~Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGNL------RFY--FPEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccCCceeEEecccccceeecccccce------EEe--cCCccccccccc-----CcccEEEEecCCccccceEEeccCCc
Confidence 9988776654 577889999998862 122 233333445566 999999987764 68999997665
Q ss_pred eeec-ccCCeeEEeeeccCCcccccccchhhhhccccceecCCce--EEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008041 285 EELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASV--HTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (579)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (579)
-... ......-..+ .+++++. ++.++...-..+. |. .++-.+|.. .+..+.+.|.|.|
T Consensus 351 f~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~-Dn~i~l~~v~g~~-----------~fel~~~~W~p~~ 411 (561)
T COG5354 351 FKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRV-DNSIKLWDVYGAK-----------VFELTNITWDPSG 411 (561)
T ss_pred eEEEEEeecCCceEe---eccCCce----EEEecCCCccccc-CcceEEEEecCch-----------hhhhhhccccCCc
Confidence 4432 2322222222 2566665 4443333221122 22 222233322 1256777888989
Q ss_pred ceeecccccee
Q 008041 362 VLLPMSQSLLK 372 (579)
Q Consensus 362 ~~l~~s~s~d~ 372 (579)
++. .+.|.+.
T Consensus 412 ~~~-ttsSs~~ 421 (561)
T COG5354 412 QYV-TTSSSCP 421 (561)
T ss_pred ccc-eeeccCC
Confidence 888 4444343
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=2.4e-07 Score=89.73 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=149.0
Q ss_pred CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC----------CC
Q 008041 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG----------GG 96 (579)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~----------~g 96 (579)
++|.|.|..+++.+..+.....+.. .++++ +..++++.. ++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~~spD---------------------------g~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--VVASD---------------------------GSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--eECCC---------------------------CCEEEEEeccccccccCCCCC
Confidence 8999999999999888764332221 13333 555666555 67
Q ss_pred eEEEEEccCCeEEEEecCCC------CCCEEEEEEccCCCEEEEEe-C-CCcEEEEeCCCCceeeEeecCC---------
Q 008041 97 DVLALAVSAGQLKWRLSDCH------PGGVSAISFATHGSCIYSAG-A-DGMVCEIDPLTGSLLGKFRAST--------- 159 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~~-~-d~~v~iwd~~~~~~~~~~~~~~--------- 159 (579)
.|.+||+.+.+.+.++.-+- ......++++|||++++... . +..|.+.|+.+++.+..+....
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 79999999999987774221 12344789999999988776 3 7899999999887665443110
Q ss_pred ---------C-------------CeeEE--------------EEcc-CCCEEEEEC-CeEEEEECCCC-----eeeEEee
Q 008041 160 ---------K-------------GISCM--------------AVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFS 196 (579)
Q Consensus 160 ---------~-------------~v~~l--------------~~~p-~g~~l~~~~-~~i~vwd~~~~-----~~~~~~~ 196 (579)
+ ..... .|.+ +|+.+.+.. |.|++.|+... +.+..+.
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecc
Confidence 0 01111 1223 777777766 99999995432 2232221
Q ss_pred -------cCCCCEEEEEEecCCCEEEEEec---------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcc
Q 008041 197 -------GHPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV 260 (579)
Q Consensus 197 -------~h~~~v~~l~~s~~~~~l~s~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (579)
...+.+.-++++|+++.++.... ..+.|.++|..+.+.. ..+.-.. ....+.++
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-----~~i~vG~-~~~~iavS---- 307 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-----RKIELGH-EIDSINVS---- 307 (352)
T ss_pred ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-----EEEeCCC-ceeeEEEC----
Confidence 12344556999999998887431 1257999999887743 3333222 33455676
Q ss_pred cCCCc-EEEEEE-cCCeEEEEEcCCceeeccc
Q 008041 261 DDAGL-YVLAIS-ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 261 ~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 290 (579)
||++ +|++.+ .++.|.++|..+++.++..
T Consensus 308 -~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 -QDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999 888777 4889999999999988766
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=7.1e-08 Score=93.41 Aligned_cols=265 Identities=14% Similarity=0.054 Sum_probs=148.7
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceeeEeecCCC-----
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK----- 160 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~~----- 160 (579)
+.|.+.|..+++.+..+..+.... .+ ++|||+.++.+.. +..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 889999999999987776554333 34 9999999887765 78999999999999988774322
Q ss_pred --CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 --~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
....++++|||+++++.. +.|.+.|+.+++.+.++.--. ...-... ++..+++.+ .|+......+.....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t-~e~~~~~~~--~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT-ANDTFFMHC--RDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe-cCCccEEEe--ecCceEEEEecCCCc
Confidence 234789999999999876 799999999999998886422 1111222 222233332 255544444333221
Q ss_pred ccceeeeeeecC-ce--eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce-----eecccCCe------eEEeeec
Q 008041 235 QSASCVLAMEHP-AV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-----ELRNTKAT------KILSSSE 300 (579)
Q Consensus 235 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~------~~~~~~~ 300 (579)
.. .....+.+. .. ..+-..+. .+|+++.+..+ |+|++.|+.... .+...... +......
T Consensus 180 ~~-~~~~~vf~~~~~~v~~rP~~~~-----~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 180 PK-IKPTEVFHPEDEYLINHPAYSN-----KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred eE-EeeeeeecCCccccccCCceEc-----CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 10 000111011 00 00001121 38888877776 999999954332 22111000 0000000
Q ss_pred cCCcccccccchhhhhccc---cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccc
Q 008041 301 DVNSKSQKSATAAIFAAKL---QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRG 376 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~ 376 (579)
..+.++++ .++.+.. .+.=......+++.+-. .......+.. ...+..+++||||+ +|.++...++.+.+
T Consensus 253 ia~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~~-t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 253 VAYHRARD----RIYLLADQRAKWTHKTASRFLFVVDAK-TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEEcCCCC----EEEEEecCCccccccCCCCEEEEEECC-CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 11333444 2222111 11111112356666532 2333333332 23789999999999 77445545777777
Q ss_pred eeee
Q 008041 377 RYVQ 380 (579)
Q Consensus 377 w~~~ 380 (579)
-++.
T Consensus 327 iD~~ 330 (352)
T TIGR02658 327 FDAE 330 (352)
T ss_pred EECc
Confidence 7764
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=8e-08 Score=107.81 Aligned_cols=250 Identities=11% Similarity=0.065 Sum_probs=148.5
Q ss_pred EEEccC-CCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fspd-g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++++++ |+++++-+..++|++||.. |..+..+.+.. .....-.+ ...++.. ...+++.+. ++.
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~----~~a~f~~-P~GIavd~~---------gn~ 637 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSF----EDATFNR-PQGLAYNAK---------KNL 637 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCch----hccccCC-CcEEEEeCC---------CCE
Confidence 378875 5566666678899999975 55444443211 00000000 0011111 123333332 444
Q ss_pred EEEEEC-CCeEEEEEccCCeEEEEecC-CC---------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008041 89 LVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 89 l~~~~~-~g~i~iwd~~~~~~~~~~~~-~h---------------~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 150 (579)
|+++.. ++.|+++|..++... .+.. +. -...++++|+| ++..+++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 555554 456999998877643 2210 00 12346899999 55556666788999999987764
Q ss_pred eeeEeecC---------------CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec-------------C-
Q 008041 151 LLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-------------H- 198 (579)
Q Consensus 151 ~~~~~~~~---------------~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~-------------h- 198 (579)
.. .+.+. -.....++++|+|+.++++. +.|++||+.++.......+ +
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 22211 12456799999998666655 7999999987653211100 0
Q ss_pred -------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-----------cCceeEEeEEecCCcc
Q 008041 199 -------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGV 260 (579)
Q Consensus 199 -------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 260 (579)
-.....++++++|..+++-. .++.|++||..++... .+.... ..-.....++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd---- 867 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALG---- 867 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEe----
Confidence 01235789999998766665 7899999999876432 111000 000123445665
Q ss_pred cCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 261 DDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 261 ~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
++|+.+++-+.+++|++||+.+++.
T Consensus 868 -~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 -ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -CCCCEEEEECCCCEEEEEECCCCcc
Confidence 8999888888899999999988764
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=3.1e-10 Score=123.60 Aligned_cols=182 Identities=21% Similarity=0.349 Sum_probs=139.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++.=+|...+.+||+.||.|++|.+..++.+..+.... ..+....|+.. ++
T Consensus 2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---------------------------Gn 2264 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---------------------------GN 2264 (2439)
T ss_pred eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---------------------------CC
Confidence 334667778899999999999999999998887776332 33333444433 77
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCC-C--ceeeEeecCCCC
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLT-G--SLLGKFRASTKG 161 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~d~~v~iwd~~~-~--~~~~~~~~~~~~ 161 (579)
.+.++..||.+.+|.+...-. ...+.|+...+++.|-. ..+++++ .++.+.+||..- + ..+. ++|.+.
T Consensus 2265 k~~i~d~dg~l~l~q~~pk~~--~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQASPKPY--TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred ceeeeccCCceeecccCCcce--eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence 789999999999999883222 33367999999999965 5566654 578999999542 2 2333 789999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
++++++-|.-+.+++|+ |.|++||++..+.+.+++. ++ ...++++++ ..|.++||++.....
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGL 2402 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccch
Confidence 99999999999999999 9999999998887766654 33 456788877 699999999988653
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=1.7e-09 Score=112.63 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=144.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
...+++++.+..+.+||...+....++. +...+ .-+.++++.-++++|+.-+.|.+|+....+.-..+.+|++
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 6679999999999999999887765553 33322 2334566777899999999999999874433335889999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
.|.++.++.||+++++.+ .++++|++++.+... +.-+|+..|..+.|.|+ ++++++ .|.+.++|+....+..
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~-- 251 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE-- 251 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh--
Confidence 999999999999999998 899999999988765 66789999999999998 788887 8999999976655432
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.-..|...-+...... ++...+++++.||.+++|+....
T Consensus 252 ---~y~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 252 ---VYDEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---hhhhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhcc
Confidence 1223444445555554 67788899999999999996543
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.4e-08 Score=99.88 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=147.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCC--CCCCEEEEEEc------c--------------CCCEEEEEeCCCcEEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE 143 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~------~--------------~~~~l~s~~~d~~v~i 143 (579)
..+++..+.||.+++||...++....+... -++..++..|. | +...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 678999999999999999999886655321 12334444442 1 2235777888999999
Q ss_pred EeCCCCceeeEee--cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041 144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 144 wd~~~~~~~~~~~--~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
|++..|+....+. .|.+.|.++.++.+-..|.+++ +.+..|+..+.+.++.+.+....+.+++.+|||..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999888776 5888999999999888999988 7999999999999999999999999999999999998864
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEE-cCCeEEEEEcC
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQ 282 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~iwd~~ 282 (579)
+.|++||+.+.+ .+..+.++...++++.|... ++. -|.+++++. .+.-+.+|-..
T Consensus 164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEe-ccccccceeeeccccccceeEEEEE
Confidence 689999999987 45778888888888888621 001 166666654 45667777543
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=1.6e-08 Score=92.76 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=150.9
Q ss_pred cCCCEEEEEeCCCcEEEEE-CCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041 15 PALDYFAICSGDARIKIWD-TLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 15 pdg~~lasg~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
|-.+-+.+.+.|.+++||- .+.++.-..+. -....+++++.+.+. ...|++|-
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------~~mP~~~~~~~y~~e---------~~~L~vg~ 87 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------HYMPSPCSAMEYVSE---------SRRLYVGQ 87 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhh-----------------hhCCCCceEeeeecc---------ceEEEEEE
Confidence 3344577889999999993 44444332221 011224455555443 56689999
Q ss_pred CCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041 94 GGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 94 ~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
.+|++.-+.+...- ...+....|...|..+-|+....++++++.|..+.---.+.+..+..+.- ....+++.+.-.
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL 166 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE
Confidence 99999988876432 12233457999999999999889999999998775444455544332211 111122222211
Q ss_pred CCEEEEEC--CeEEEEE--CCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 171 GKMLATAA--GQLKTFN--CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 171 g~~l~~~~--~~i~vwd--~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
+...|. |.|.... ...-..+.++.+|.+.+.++.|.|..+.++++. .|..+.+||+...+.. . ..+..+
T Consensus 167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~---~-~el~gh 239 (404)
T KOG1409|consen 167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT---A-YELQGH 239 (404)
T ss_pred --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce---e-eeeccc
Confidence 344444 5544433 344567889999999999999999999999987 6999999999877644 1 223333
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
...+..++.. +--+.+.+++.||.|.+||.+..+
T Consensus 240 ~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 240 NDKVQALSYA-----QHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhh-----hhheeeeeccCCCeEEEEecccee
Confidence 3333444443 556889999999999999976543
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=1.5e-07 Score=103.56 Aligned_cols=235 Identities=13% Similarity=0.202 Sum_probs=153.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+.+.|-++..-++.+..+|.|.+. +..+..... .|.....+.++.|.|.
T Consensus 79 vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~-------------------VG~vd~GI~a~~WSPD-------- 131 (928)
T PF04762_consen 79 VSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI-------------------VGSVDSGILAASWSPD-------- 131 (928)
T ss_pred EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE-------------------EEEEcCcEEEEEECCC--------
Confidence 777999999999999999999988 444333221 1444667888889886
Q ss_pred CCcEEEEEECCCeEEEEEcc----C---------C--eEE--------EEe------------cC--------C---CCC
Q 008041 85 GSSLLVLGTGGGDVLALAVS----A---------G--QLK--------WRL------------SD--------C---HPG 118 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~----~---------~--~~~--------~~~------------~~--------~---h~~ 118 (579)
..++++.+.+|++.+.+-. . | +.+ .++ .. + +.+
T Consensus 132 -~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd 210 (928)
T PF04762_consen 132 -EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD 210 (928)
T ss_pred -cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence 6789999999997775432 0 0 000 000 00 0 223
Q ss_pred CEEEEEEccCCCEEEEEeC---C---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECC
Q 008041 119 GVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCS 187 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~---d---~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~ 187 (579)
.-..++|..||.+|++.+. . ..+++|+ ++|..-.+-..-.+-=.+++|.|.|+++|+.. ..|.+|. +
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-r 288 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-R 288 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-c
Confidence 4567899999999988764 2 5799999 45776555444344446789999999999986 3566665 5
Q ss_pred CCeeeEEee----cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC
Q 008041 188 DHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 188 ~~~~~~~~~----~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
+|-....|. .....|..+.|++|+..|+... .|. |.+|...+..-- .+.......... ...+.|++ .+
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWY-LKqei~~~~~~~-~~~~~Wdp----e~ 360 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWY-LKQEIRFSSSES-VNFVKWDP----EK 360 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEE-EEEEEEccCCCC-CCceEECC----CC
Confidence 665444443 3456799999999999999875 454 999998876422 001111212222 22356651 25
Q ss_pred CcEEEEEEcCCeEEEEEc
Q 008041 264 GLYVLAISETGVCYIWYG 281 (579)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~ 281 (579)
...|...+.+|.+..++.
T Consensus 361 p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCEEEEEecCCcEEEEEE
Confidence 567888888788877664
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=5.1e-09 Score=94.62 Aligned_cols=247 Identities=17% Similarity=0.217 Sum_probs=159.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
.++.|...|.|||+|...|+|.+|.-.... ...+|++|..... |- ..-.....+..+.|+....
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~----- 98 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG----- 98 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC-----
Confidence 445899999999999999999999754322 2344555543221 11 1112234667788887653
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeE-------------------------------------E----EE-ecCCCCCCEE
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQL-------------------------------------K----WR-LSDCHPGGVS 121 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~-------------------------------------~----~~-~~~~h~~~V~ 121 (579)
...+++.+.+.+|++|.+..... + .+ ....|.-.+.
T Consensus 99 --r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 99 --RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred --cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 56788999999999999864311 0 01 1145777789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC-----CCeeEEEEccCCC--EEEEEC-CeEEEEECCCCe
Q 008041 122 AISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST-----KGISCMAVSSDGK--MLATAA-GQLKTFNCSDHK 190 (579)
Q Consensus 122 ~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~-----~~v~~l~~~p~g~--~l~~~~-~~i~vwd~~~~~ 190 (579)
++.|+.|...++++ .|-.|.+|++.--. .+..++.|. .-|++..|+|... ++.+.+ |.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999988888776 67889999986432 222344443 2578889999543 344455 999999998542
Q ss_pred ee------E----------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc-------
Q 008041 191 KM------Q----------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA------- 247 (579)
Q Consensus 191 ~~------~----------~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------- 247 (579)
.. . -|.+-...|..+.|+++|+|+++-. =-+|++||.+..+.. +.+.+-+.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~ 329 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELN 329 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHH
Confidence 21 1 1122235688899999999998753 468999999887532 33332111
Q ss_pred ------eeEE--eEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 248 ------VFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 248 ------~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
.+.. -+.|+ .|.+.+++|+..+..-+|-
T Consensus 330 d~YEnDaifdkFeisfS-----gd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEISFS-----GDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEEEec-----CCcccccccccccceeeec
Confidence 1111 12233 6778888888877776664
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=3.6e-08 Score=99.61 Aligned_cols=226 Identities=12% Similarity=0.118 Sum_probs=140.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..++.++.+|.+..+|..+|+.......... .++.+ +. .+..+++++.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p------------~v------------~~~~v~v~~~~ 154 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP------------LV------------ANGLVVVRTND 154 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC------------EE------------ECCEEEEECCC
Confidence 456777788899999999999998876542111 00100 00 14567888899
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCE-----EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC----C-----
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G----- 161 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~----~----- 161 (579)
|.++.||..+|+.+++.... ...+ .+... .+..++.+..++.+..+|..+|+.+........ .
T Consensus 155 g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRV-TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CeEEEEEcCCCceeeEEccC-CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 99999999999998776321 1111 11111 134677888899999999999987655331100 0
Q ss_pred -e-eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 162 -I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 -v-~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
+ .+..+. ++..++++. |.++.||.++++.+..... . ....... ++..++.++ .|+.+..+|..+++..
T Consensus 232 ~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~--- 302 (377)
T TIGR03300 232 DVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSEL--- 302 (377)
T ss_pred ccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEEC-CCCeEEEEECCCCcEE---
Confidence 0 111122 344444443 8999999999987766542 1 1122222 355666665 6999999999887643
Q ss_pred eeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..... ......... ..+..|++++.+|.++++|..+++.+...+
T Consensus 303 --W~~~~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 303 --WKNDELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred --EccccccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 22111 111111111 235688899999999999999998876543
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=1.3e-07 Score=90.40 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=126.5
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 13 fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
|++ +|+++|..|. |+..|.+.-.+..++.- +...+.-..+.. .+.-++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~VrY~r~~~---------------------------~~e~~vi 376 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGVRYRRIQV---------------------------DPEGDVI 376 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCceEEEEEcc---------------------------CCcceEE
Confidence 444 6889998885 67777776656554321 111111111111 1446899
Q ss_pred EECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041 92 GTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 92 ~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
|+.|| .+-|||..+++... + .+.-+.|.++..+|+|+.++.+.....+.+.|+.+|.....=+...+-|+..+|||+
T Consensus 377 gt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence 99999 59999999998753 3 346688999999999999999988889999999999876555556678999999999
Q ss_pred CCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008041 171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 171 g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
++++|-+- ..|++||+.+++....-. ..+.=.+-+|.||+++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 99999875 589999999988754432 233335678999999887654
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=9.3e-08 Score=86.11 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=125.3
Q ss_pred CCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCC------C
Q 008041 94 GGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK------G 161 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~---~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------~ 161 (579)
..|.+.+|++...+... .+....++.+..+.|.. +|. .++-+..+|.|.++..........+++-.. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34778888887765432 22222345677777753 444 366677889999987654444444443221 2
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
..++.|++.+..++++. |.+.+-+...... +++.++|..+.....|+.... .+++|| +|+.+..||++..+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg-DD~~l~~~D~R~p~~-- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG-DDGSLSCWDIRIPKT-- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC-CCceEEEEEecCCcc--
Confidence 45788999999888887 7887555544433 447889999999999986554 555555 899999999994431
Q ss_pred ceeeee--eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc-eeec
Q 008041 237 ASCVLA--MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI-EELR 288 (579)
Q Consensus 237 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~ 288 (579)
+++. ..|...+.+..... |.+.+|++|+.|-.|++||.++. +++.
T Consensus 201 --~i~~n~kvH~~GV~SI~ss~-----~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 201 --FIWHNSKVHTSGVVSIYSSP-----PKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred --eeeecceeeecceEEEecCC-----CCCceEEEeccccceeeeehhcccCccc
Confidence 3332 33566666666555 78899999999999999998854 4443
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=5.3e-07 Score=84.76 Aligned_cols=216 Identities=19% Similarity=0.211 Sum_probs=135.1
Q ss_pred CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC
Q 008041 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA 105 (579)
Q Consensus 26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~ 105 (579)
+|+|..||..+|+.+....-.. .. ......+.. .+..+++++.++.++.||..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~------------------~~~~~~~~~-------~~~~v~~~~~~~~l~~~d~~t 55 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GI------------------GGPVATAVP-------DGGRVYVASGDGNLYALDAKT 55 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SC------------------SSEEETEEE-------ETTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CC------------------CCccceEEE-------eCCEEEEEcCCCEEEEEECCC
Confidence 6899999999999988774211 00 000000000 166788889999999999999
Q ss_pred CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCCC---CeeEEEEccCCCEEEEEC--C
Q 008041 106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTK---GISCMAVSSDGKMLATAA--G 179 (579)
Q Consensus 106 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~---~v~~l~~~p~g~~l~~~~--~ 179 (579)
|+.+++.... .++.... ..++..++.++.++.++.+|..+|+.+..+ ..... .........++..++++. +
T Consensus 56 G~~~W~~~~~--~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 GKVLWRFDLP--GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp SEEEEEEECS--SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred CCEEEEeecc--cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 9998877432 2211111 224556777778899999999999998884 32211 112222222355555554 8
Q ss_pred eEEEEECCCCeeeEEeecCCCC----------E-EEEEEecCCCEEEEEecCCCe-EEEEEcCCCccccceeeeeeecCc
Q 008041 180 QLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~----------v-~~l~~s~~~~~l~s~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
.|..+|.++|+.+......... + ..+.+ .++ .++.++ .++. +.+ |+.+++.. .... ..
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~-~~g~~~~~-d~~tg~~~-----w~~~-~~ 202 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSS-GDGRVVAV-DLATGEKL-----WSKP-IS 202 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEEC-CTSSEEEE-ETTTTEEE-----EEEC-SS
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEc-CCCeEEEE-ECCCCCEE-----EEec-CC
Confidence 9999999999998888664422 1 22222 344 555555 5665 555 99988632 2222 11
Q ss_pred eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.... . .. .++..|++++.+|.+..||..+++.+
T Consensus 203 ~~~~-~-~~-----~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 203 GIYS-L-PS-----VDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp -ECE-C-EE-----CCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CccC-C-ce-----eeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 1111 1 12 57788888889999999999999875
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7.3e-08 Score=93.89 Aligned_cols=320 Identities=12% Similarity=0.059 Sum_probs=180.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
-+.|||-|.||+|--.-| |.+|--.+....+.|..+ .+....|+|. ..+|
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp--~Vq~idfSP~---------------------------EkYL 264 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP--GVQFIDFSPN---------------------------EKYL 264 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC--CceeeecCCc---------------------------cceE
Confidence 358999999999988766 789976555555544311 1222223332 2333
Q ss_pred EEEE----------CC-CeEEEEEccCCeEEEEecCC-CCCCE-EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 90 VLGT----------GG-GDVLALAVSAGQLKWRLSDC-HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 90 ~~~~----------~~-g~i~iwd~~~~~~~~~~~~~-h~~~V-~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
++-+ .+ ..+.|||+.+|.....+..- ....+ .-+.||.|+++++.-.. ..|.||+..+..++..-.
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS 343 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence 3322 23 34999999999887555321 11223 34689999999987765 458999976543332222
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---------C
Q 008041 157 ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------G 220 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---------~ 220 (579)
-....|....|+|.+++||-=. ..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.--. .
T Consensus 344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 2345788899999999888644 46778888888777765544433334667677877765321 0
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---CCeEEEEEcCC-ceeecccCCeeEE
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IEELRNTKATKIL 296 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~-~~~~~~~~~~~~~ 296 (579)
-..+.|+.++..... +...+-...++. ..|. |.|..+++.+. ..++.+|.+++ .....-.+.....
T Consensus 424 f~n~eIfrireKdIp----ve~velke~vi~-FaWE-----P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIP----VEVVELKESVIA-FAWE-----PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK 493 (698)
T ss_pred EeeEEEEEeeccCCC----ceeeecchheee-eeec-----cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence 113455555554322 222333333333 3444 88888777654 45899998873 2221111111112
Q ss_pred eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc------
Q 008041 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL------ 370 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~------ 370 (579)
.+....++|.|. .++.+..-+ ..|.+-..+-+ ...+.............+-|.|.|+|+ +++|.
T Consensus 494 ~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~~-~a~~k~~~~~eh~~at~veWDPtGRYv-vT~ss~wrhk~ 563 (698)
T KOG2314|consen 494 FANTVFWSPKGR----FVVVAALVS----RRGDLEFYDTD-YADLKDTASPEHFAATEVEWDPTGRYV-VTSSSSWRHKV 563 (698)
T ss_pred ccceEEEcCCCc----EEEEEEecc----cccceEEEecc-hhhhhhccCccccccccceECCCCCEE-EEeeehhhhcc
Confidence 222334677777 666665543 12222222211 111111111222256788899999999 66663
Q ss_pred eecccceeee
Q 008041 371 LKSKRGRYVQ 380 (579)
Q Consensus 371 d~~~~~w~~~ 380 (579)
|.--++|.++
T Consensus 564 d~GYri~tfq 573 (698)
T KOG2314|consen 564 DNGYRIFTFQ 573 (698)
T ss_pred ccceEEEEee
Confidence 3334556554
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=3.1e-09 Score=116.07 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=145.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+.++|+.||.|++|....+..+......-++.|+.+.|+.+|+.+..+..||.+.+|... .++....+.|....+..
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence 45689999999999999998887655554555899999999999999999999999999975 77777888999888888
Q ss_pred EEccCCCEEEEEC-----CeEEEEECCC--Ce-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 166 AVSSDGKMLATAA-----GQLKTFNCSD--HK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 166 ~~~p~g~~l~~~~-----~~i~vwd~~~--~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
.|-. ..+++++ +.+.+||.-- +. .+. ..|.+.++++++.|..+.|++|| .+|.|++||++..+.+
T Consensus 2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~-- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR-- 2371 (2439)
T ss_pred eeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH--
Confidence 8874 6777776 6899999652 22 233 78999999999999999999988 7999999999998754
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
|+-.. + ....++++|+..|.++||++.....+...+
T Consensus 2372 -------h~~~~-----~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 -------HTFQA-----L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -------HHhhh-----h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 11111 1 134789999999999999998876665553
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=7.2e-08 Score=96.54 Aligned_cols=239 Identities=11% Similarity=0.140 Sum_probs=158.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-|++|+....|+|+|+.||.++|-.+.+...-...++ -.....+..... ..|| ...+..+.|+.... .
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH-~~sV~vvTWNe~~Q---------K 85 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGH-NASVMVVTWNENNQ---------K 85 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccC-cceEEEEEeccccc---------c
Confidence 5679999999999999999999998876544333333 122333444444 3466 34667788887644 3
Q ss_pred EEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~ 166 (579)
+-+...+|-|.+|-+-.|....... ....+.|.+++|+.||..+.....||.|.+=.+...+...+ +++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 7788889999999998886543332 23456789999999999999999999998877654333222 222 2445789
Q ss_pred EccCCCEEEEEC--CeEEEEECCCC-------eeeEE----eecCCCCEEEEEEe--------cCCCEEEEEecCCCeEE
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDH-------KKMQK----FSGHPGAVRFMTFS--------DNGKYVLSSAVGERYIA 225 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~-------~~~~~----~~~h~~~v~~l~~s--------~~~~~l~s~~~~d~~i~ 225 (579)
|++|.+.++.+- |.+.+||.+.. .+... +......|..+.|. ||...|+.+- ..|.+.
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-ANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cCceeh
Confidence 999998887776 89999997542 11111 11122235555553 4677788765 688887
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 273 (579)
+..-...... .+. ..+..+....|+ ++|..|++++.+
T Consensus 243 iMR~eND~~P---vv~---dtgm~~vgakWn-----h~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEP---VVV---DTGMKIVGAKWN-----HNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCC---eEE---ecccEeecceec-----CCCcEEEEccCc
Confidence 7654444322 121 223444556666 999999998764
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.94 E-value=2.4e-07 Score=82.35 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=133.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
-..|+.|+..|...+|.+.+.+........|...|+-+.=..+.. .+..++.|.+++++++.-+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 456899999999999999988765555455655444332222222 3667889999999998655433333222234789
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCC-ee-eE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDH-KK-MQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~-~~-~~-~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
++++||++++++.+ ..|..|.+... +. +. ........=.+..|+.....++++. .||++.|||++.........
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence 99999999999988 78999988643 22 22 1222333445678888888888887 89999999999875443333
Q ss_pred eeeeecCceeEEeEEecCCcccCCCc--EEEEEEcCCeEEEEEcCCceeec
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
..+.+++...++...|+ +.|. +|+..-.=+.+++-|.++++...
T Consensus 243 sstrp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred cccCCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCceee
Confidence 34456788888888887 4442 34444445789999988876543
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.92 E-value=5.2e-08 Score=89.54 Aligned_cols=182 Identities=10% Similarity=0.150 Sum_probs=124.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECC----CCeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.+++ -+++|.++...|..|-..|++.-+.+. .....+....|...+....|+.+..---.....+++.|.-...
T Consensus 68 P~~~--~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 68 PSPC--SAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred CCCc--eEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 4667 445999999999999999998888653 3344555567777777777765522111223344566654321
Q ss_pred cccc------------ccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 008041 79 KKKR------------KLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI 144 (579)
Q Consensus 79 ~~~~------------~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iw 144 (579)
..+- ..+-.+.++|...|.|.+-.+.... .+.+ ..+|.+++++++|.|....+++|..|..+.+|
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 1100 0011245566666776666554332 3333 47899999999999999999999999999999
Q ss_pred eCCCCce-eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008041 145 DPLTGSL-LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187 (579)
Q Consensus 145 d~~~~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~ 187 (579)
|+.-++- .....+|.+.|..+..-+--+.+.+++ |.|.+|+.+
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 9865443 345777888888888887777888877 899999874
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.8e-09 Score=103.25 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=131.6
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-------CceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEEC
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~ 186 (579)
.||+..|..++--.+.+.|++++.|++|++|.++. ..+-.+++.|+.+|..+.|-.+-+.+++++|-|++||.
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDP 811 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDP 811 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecc
Confidence 68998898887777788899999999999999863 23666788999999999999999999999999999998
Q ss_pred CCCeeeEEee--cCCCCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC
Q 008041 187 SDHKKMQKFS--GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (579)
Q Consensus 187 ~~~~~~~~~~--~h~~~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (579)
--++.+..+. ...+.+..+..-+ +...++++++...+|+++|.+.......-.+.....++...+++... +
T Consensus 812 Figr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa-----~ 886 (1034)
T KOG4190|consen 812 FIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA-----D 886 (1034)
T ss_pred cccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec-----c
Confidence 7777665432 1223334444434 34455555457889999999987643111222234556677888887 8
Q ss_pred CCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041 263 AGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
.|++++++-.+|+|.+.|.++|+.+..-.|
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 999999999999999999999988765443
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=5.5e-07 Score=91.13 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=116.6
Q ss_pred eEEEEccCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 9 l~~~fspdg~~-lasg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+...|||||+. ++..+.+ ..|.++|+.+|+...... ..+. .....|.|.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~------------------~~~~~~SPD-------- 243 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM------------------LVVSDVSKD-------- 243 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc------------------EEeeEECCC--------
Confidence 56799999985 6655543 468888998887654332 1111 112335443
Q ss_pred CCc-EEEEEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecC
Q 008041 85 GSS-LLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 85 ~~~-~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~ 158 (579)
+. ++++.+.+ ..|+++|+.+++.. .+. .+........|+|||+.++..+. .+ .|+++|+.+++..+....
T Consensus 244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~- 319 (419)
T PRK04043 244 -GSKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH- 319 (419)
T ss_pred -CCEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence 43 33444434 45888998888754 332 23333445689999998776653 22 688889887776443321
Q ss_pred CCCeeEEEEccCCCEEEEEC--C---------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEE
Q 008041 159 TKGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIA 225 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~---------~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~ 225 (579)
... ...|+|||+.++... . .|++.|+.++.. ..+... .......|+|||+.++......+ .+.
T Consensus 320 g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 320 GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 111 248999999888764 1 578889888754 344433 23345889999998877653323 355
Q ss_pred EEEcCCC
Q 008041 226 LWRTDGV 232 (579)
Q Consensus 226 vwd~~~~ 232 (579)
+.++...
T Consensus 396 ~~~l~g~ 402 (419)
T PRK04043 396 IIRLNYN 402 (419)
T ss_pred EEecCCC
Confidence 6666554
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=1.8e-08 Score=94.62 Aligned_cols=159 Identities=11% Similarity=0.159 Sum_probs=109.0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+.++|+|+++|.+..+....++++........+-. ........+.+.+... ...+.
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~---------------~~~v~~~~~ai~~~~~---------~~sv~ 123 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD---------------VSCVPKRPTAISFIRE---------DTSVL 123 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeee---------------EeecccCcceeeeeec---------cceEE
Confidence 36889999999998888877887764432111100 0001112223333333 33456
Q ss_pred EEECCCeEE---EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008041 91 LGTGGGDVL---ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA 166 (579)
Q Consensus 91 ~~~~~g~i~---iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~ 166 (579)
++...|+++ +|+...+.+. ..-||-+.+++++|+||+++++++..|..|++-....-..+.. +-+|...|..++
T Consensus 124 v~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred EEeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 666666644 4544445443 3358999999999999999999999999999987665555555 456999999999
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEee
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~ 196 (579)
.-++. .|++++ +++++||+.+|+.+.++.
T Consensus 202 l~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 98765 466666 899999999999886664
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=8.5e-09 Score=100.03 Aligned_cols=230 Identities=14% Similarity=0.178 Sum_probs=148.9
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
.||.+ +--.+.+-+++++.|.+|++|.++. ..+..+++.|..++.++.|-.+
T Consensus 737 ~iRai--~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~------------------- 795 (1034)
T KOG4190|consen 737 KIRAI--AAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD------------------- 795 (1034)
T ss_pred HhHHH--HhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-------------------
Confidence 34444 3334556788999999999998863 3466677777776665555433
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecC----CCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCcee
Q 008041 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~ 152 (579)
+-.+++.||-|++||+--+..+.+... +..+.|.|+. +-+...++. |+...+|+++|.+.+.-.
T Consensus 796 ----------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 796 ----------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ----------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence 125678899999999988876554331 1222344432 223444444 478899999999988766
Q ss_pred eEeec-----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 153 GKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 153 ~~~~~-----~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
..++. ....+.++++.|.|+.++.+- |.|.+.|.++|+.+..+..-......++- |..+.++.+. -|.++.
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa-ldHsla 942 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA-LDHSLA 942 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc-ccceeE
Confidence 55543 345688999999999999886 99999999999988776654444444443 5566777776 588998
Q ss_pred E-EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 226 L-WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 226 v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
+ |..-.+. ..++...+........ .-|..+++....+.+.+|-
T Consensus 943 VnWhaldgi-----mh~q~kpppepahflq-------svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 943 VNWHALDGI-----MHLQDKPPPEPAHFLQ-------SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eeehhcCCe-----eeeccCCCCcchhhhh-------ccCceeEEeccCcEEEEEe
Confidence 8 8766553 1222222222211111 2345567766666777773
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=6.8e-06 Score=77.61 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=131.2
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+|.+ +|.++++--..+.|..|+..++....... .. .....+ ... ...+
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~------------------~~~---------~g~l 54 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAF------------------DRP---------DGRL 54 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEE------------------ECT---------TSEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEE------------------Ecc---------CCEE
Confidence 36888 66666666578999999998887643211 11 111111 111 3446
Q ss_pred EEEECCCeEEEEEccCCeEEEEec---CC-CCCCEEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeeEeec
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLS---DC-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~---~~-h~~~V~~l~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~~ 157 (579)
+++...+ +.++|+.+++...... .. .....+++++.|+|+..++.... |.|..++.. ++......
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 6666544 4555999886542222 11 34568899999999976665533 568888876 55444333
Q ss_pred CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-e------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-K------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~-~------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
.-...+.|+|+|+++.|+.+. +.|..|++... . .+..+....+..-.+++..+|+..++.. ..+.|.++
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence 345678999999999887654 78999988632 1 1222232223478899999998776654 68899999
Q ss_pred EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
+.+ ++.. ..+..+......++|. -++.+.|++.+
T Consensus 211 ~p~-G~~~-----~~i~~p~~~~t~~~fg----g~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPD-GKLL-----REIELPVPRPTNCAFG----GPDGKTLYVTT 244 (246)
T ss_dssp ETT-SCEE-----EEEE-SSSSEEEEEEE----STTSSEEEEEE
T ss_pred CCC-ccEE-----EEEcCCCCCEEEEEEE----CCCCCEEEEEe
Confidence 988 5432 2333332345556663 15666665554
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=3.4e-06 Score=79.61 Aligned_cols=191 Identities=18% Similarity=0.203 Sum_probs=126.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeeEeec-----CC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~~ 159 (579)
+.++++-...+.|+.|+..+++....... ...++.+. +++ .++.+..++ +.++|..+++....+.. ..
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP----GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEESS----SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEecC----CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 66677777789999999999887532222 27788888 564 555665544 56669988865444332 23
Q ss_pred CCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
..++.+++.|+|++.++.. |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.+..+.|..+++
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence 4788999999999777754 247777776 55433333 34567899999999988766667888999998
Q ss_pred CCCcc-c-cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 230 DGVKK-Q-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 230 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..... . .................+++. .+|+..++.-..+.|.++|.+ |+.+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 65432 1 111222233333346777787 889888877789999999987 7665433
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=3e-06 Score=85.81 Aligned_cols=177 Identities=12% Similarity=0.011 Sum_probs=112.3
Q ss_pred EEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eC--CCcEEEEeCCCCceeeEeecCCCCe
Q 008041 89 LVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GA--DGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 89 l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~--d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
++..+.. ..|+++|+.+++..... ...+......|+|||+.++.. +. +..|+++|+.+++..+ +..+....
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d 279 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGID 279 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCcc
Confidence 5544443 45999999988764332 244556778899999876543 33 3568888987776433 44333333
Q ss_pred eEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCC--------CeEEEEE
Q 008041 163 SCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGE--------RYIALWR 228 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d--------~~i~vwd 228 (579)
....|+|||+.|+..+ ..|+++|+.+++..+... +.. ...|+|||++++..+..+ ..|.+.|
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 4568999999887765 279999998876533222 221 248999999988876432 3678888
Q ss_pred cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCc
Q 008041 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI 284 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~ 284 (579)
+.++... .+.... ......|+ |||+.|+..+.++ .+.+.+++..
T Consensus 356 ~~~g~~~------~LT~~~-~~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 356 TNSDYIR------RLTANG-VNQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCCCeE------ECCCCC-CcCCeEEC-----CCCCEEEEEEccCCcEEEEEEecCCC
Confidence 8776532 111111 11234566 9999887776533 4556666543
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1e-06 Score=86.16 Aligned_cols=239 Identities=13% Similarity=0.173 Sum_probs=154.0
Q ss_pred EEEccCCCEEEEEeC-----------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 11 TSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 11 ~~fspdg~~lasg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.|||+.+||+|-+. ...+.|||+.+|...+.|...... ........|...
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~---------------~~~WP~frWS~D--- 316 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP---------------YLKWPIFRWSHD--- 316 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC---------------ccccceEEeccC---
Confidence 399999999998663 147999999999998887632110 123344556553
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceeeE
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~ 154 (579)
..+ ++.-....|.||+...-.++. ...-.-.+|....|+|.++.|+.-.. -.++.+..+.+++.+++
T Consensus 317 ------dKy-~Arm~~~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 317 ------DKY-FARMTGNSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred ------Cce-eEEeccceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 233 334444779999987744331 11224467899999999888775432 23577777777877776
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d- 221 (579)
-.-+.-.=..+-|-.+|.+|+.-- ..+.|+.++....-...-.-...|...+|-|.|..+++-+.++
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 554443445577778888887532 2566666665443222223456788999999998776655333
Q ss_pred -CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---CCeEEEEEcCC
Q 008041 222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN 283 (579)
Q Consensus 222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 283 (579)
.++.+|.+.+.... .+.+..++ ......++|+ |.|++++++.. .|.+.++|...
T Consensus 469 k~tvsfY~~e~~~~~-~~lVk~~d--k~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKK-PSLVKELD--KKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ccceeEEEeecCCCc-hhhhhhhc--ccccceEEEc-----CCCcEEEEEEecccccceEEEecch
Confidence 46888988853211 11223322 2344567777 99999988854 68999999874
No 286
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=9.7e-08 Score=87.76 Aligned_cols=247 Identities=13% Similarity=0.083 Sum_probs=152.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeE----EEEecCCCC------------CCEEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~ 147 (579)
|.+|++|..+|.|.+|.-..... .....+.|. ..|..+.|.++++ .++..+.|.+|++|-+.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~ 116 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR 116 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence 88999999999999987543221 222223343 3588899998765 47777899999999875
Q ss_pred CCce-----------------------------------eeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008041 148 TGSL-----------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (579)
Q Consensus 148 ~~~~-----------------------------------~~~~-~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~ 190 (579)
.... .+.+ .+|.--|++|.++.|+..+++++ =.|.+|+++-..
T Consensus 117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID 196 (433)
T ss_pred ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence 3211 0111 14666889999999999999999 699999987432
Q ss_pred e---eEEeecCC-----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc-ceeeeeeecC----------ceeE
Q 008041 191 K---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAMEHP----------AVFM 250 (579)
Q Consensus 191 ~---~~~~~~h~-----~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~----------~~~~ 250 (579)
. +..++.+. .-|++..|+|... .++.++ ..|+|++.|++....-. ....+..+.. -..+
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 2 22333333 4588889999643 455555 58999999998542110 0011111110 1123
Q ss_pred EeEEecCCcccCCCcEEEEEEcCCeEEEEEcC-CceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceE
Q 008041 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (579)
+-+.|+ ++|+++++-+. -+|++||+. ..+.+...+-+ + .-+ ..+..-....
T Consensus 276 SDvKFs-----~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh-----~------~lr---~kLc~lYEnD-------- 327 (433)
T KOG1354|consen 276 SDVKFS-----HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH-----E------YLR---SKLCSLYEND-------- 327 (433)
T ss_pred hceEEc-----cCCcEEEEecc-ceeEEEeccccCCcceEEeeh-----H------hHH---HHHHHHhhcc--------
Confidence 444555 89999987654 589999973 22222211100 0 000 0111111100
Q ss_pred EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.. .....++||.++..+ +|||..+..++.+..
T Consensus 328 -------~I-----------fdKFec~~sg~~~~v-~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 328 -------AI-----------FDKFECSWSGNDSYV-MTGSYNNVFRVFNLA 359 (433)
T ss_pred -------ch-----------hheeEEEEcCCcceE-ecccccceEEEecCC
Confidence 01 134567899999999 999999999998853
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.84 E-value=1.4e-06 Score=98.00 Aligned_cols=213 Identities=11% Similarity=0.117 Sum_probs=128.9
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCcccccccccccc-ccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++|+++++.|+.+.. .+.|+++|..++.. .++.+..... ..+... ......-.....+.+.+.+ +.
T Consensus 628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g--~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~ 696 (1057)
T PLN02919 628 GLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKG--SDYQGGKKGTSQVLNSPWDVCFEPVN--------EK 696 (1057)
T ss_pred EEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCccc--CCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence 3489998887666654 56799999877653 3333211000 000000 0000000111234444432 45
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEe-------cCC------CCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceee
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRL-------SDC------HPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~-------~~~------h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~ 153 (579)
++++.+.++.|++||..++....-. ..+ .-...++++|+|+|+.++ +-+.++.|++||+.++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 5666677788999999877653110 001 112456899999998655 44567899999998765321
Q ss_pred Eeec-------------C--------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-c------------
Q 008041 154 KFRA-------------S--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-G------------ 197 (579)
Q Consensus 154 ~~~~-------------~--------~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~------------ 197 (579)
...+ . -.....++++|+|+++++-. +.|++||..++....... +
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a 856 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA 856 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence 1100 0 11346899999998777765 799999998876543221 1
Q ss_pred CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 198 h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
+-.....++++++|+.+++-+ .++.|++||+.+++.
T Consensus 857 ~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 112467899999998776655 789999999988753
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=7.5e-07 Score=90.42 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=138.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.+|.+.-+|.++|+...+...... .++.+ +. .+..+++++.+|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP------------~v------------~~~~v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP------------VV------------SDGLVLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC------------EE------------ECCEEEEECCCC
Confidence 45666777889999999999998876653211 01111 00 145678889999
Q ss_pred eEEEEEccCCeEEEEecCCCCCC----EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-------CeeEE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGG----VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCM 165 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~----V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-------~v~~l 165 (579)
.++.+|..+|+.+++........ ..+... .+..++.++.++.+..+|..+|+.+..+..... ....+
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 99999999999988774321100 001111 233577778899999999999987665432110 01111
Q ss_pred EEcc---CCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 166 AVSS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 166 ~~~p---~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
..+| ++..++++. |.++.+|..+|+.+.+..- .....+.. .+..++.++ .++.+..+|..+++.. .
T Consensus 249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~~~-----W 318 (394)
T PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVD-QNDRVYALDTRGGVEL-----W 318 (394)
T ss_pred CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEc-CCCeEEEEECCCCcEE-----E
Confidence 1222 454554444 8999999999987765431 11122222 344566665 6899999999887643 1
Q ss_pred eeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 242 AMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.... .......... .+..|++++.||.++.+|..+|+.+...
T Consensus 319 ~~~~~~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 319 SQSDLLHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cccccCCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 1111 0111111111 2466788999999999999999877544
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.82 E-value=4.9e-06 Score=80.00 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=125.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++++.+. |+..+.+...+-.+ + -+|.+.|.-..+..+++-++.|..|| .+-++|..+++. ..+...-+.|.+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a 406 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA 406 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence 667777665 66677766666554 2 36888899999988888899999999 899999877654 445556778999
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccce
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSAS 238 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~~~~~~ 238 (579)
+..+|+|+.++.+. ..|.++|++++.....-+...+-|+.+.|+|++++++.+- -+| .|+++|+..++.-
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Kiy--- 482 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKIY--- 482 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeEE---
Confidence 99999999999988 6888889999976555556678899999999999998864 454 6999999987632
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
....+...=-.-+|. ||+++|.--+
T Consensus 483 ---~vTT~ta~DfsPaFD-----~d~ryLYfLs 507 (668)
T COG4946 483 ---DVTTPTAYDFSPAFD-----PDGRYLYFLS 507 (668)
T ss_pred ---EecCCcccccCcccC-----CCCcEEEEEe
Confidence 222221111122344 8888876554
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=4.2e-07 Score=92.13 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=159.0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+.|+|.| ++|.|+. ..|.|-|..+-+.++.+..|...++.+.|++... +... .++. ...-+|+
T Consensus 21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~--p~~l---------lS~~----~~~lliA 83 (1062)
T KOG1912|consen 21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPS--PRDL---------LSPS----SSQLLIA 83 (1062)
T ss_pred cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCC--chhc---------cCcc----ccceeEE
Confidence 3788877 8888884 4788999999999988877766665555544310 0000 0000 0134678
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
++.-.|.|.+||...+..+..+ ..|.+++.+++|-+ +. ..++.-....++.+|+..+|+.+.+.........|+.
T Consensus 84 saD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 84 SADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFR 162 (1062)
T ss_pred eccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeee
Confidence 8888899999999998887666 56889999999976 33 3466667788999999999999988877777888899
Q ss_pred Ecc-CCCEEEE-EC-CeEEEEECCC-------CeeeEEeecCCC----------------C---------EEEEEEecCC
Q 008041 167 VSS-DGKMLAT-AA-GQLKTFNCSD-------HKKMQKFSGHPG----------------A---------VRFMTFSDNG 211 (579)
Q Consensus 167 ~~p-~g~~l~~-~~-~~i~vwd~~~-------~~~~~~~~~h~~----------------~---------v~~l~~s~~~ 211 (579)
+.| |.+.+.. ++ |.+.+-+.-. ++.+..-..|.. . ...++|+|.-
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 998 4444443 44 6666554321 222222222222 0 1234677765
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+.++... -.+.+.++|++-.... ....-+......+.+-+ .|....|++...||.+.+|--+.
T Consensus 243 rn~lfi~-~prellv~dle~~~~l-----~vvpier~~akfv~vlP---~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 243 RNILFIT-FPRELLVFDLEYECCL-----AVVPIERGGAKFVDVLP---DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceEEEE-eccceEEEcchhhcee-----EEEEeccCCcceeEecc---CCCcceEEEEecCCeEEEEEeec
Confidence 5444444 4778999999877643 23322222222222220 14556799999999999996443
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=2.3e-06 Score=86.90 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=139.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+..+++++.+|.|.-+|..+|+.+......... ..++.. ...... ..... .+..+++++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~ 129 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK 129 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence 3557777788899999999999998876532210 000000 000000 00000 15668889999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEcc
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS 169 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p 169 (579)
|.++.+|..+|+.+++.... +.+.+ ... .+..++.++.++.++.+|..+|+.+..+......+ .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~- 204 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA- 204 (394)
T ss_pred CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence 99999999999998876422 22222 112 24467778889999999999999888765421111 111122
Q ss_pred CCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-------CEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 170 ~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
++..++... |.+..+|..+|+.+.+...... ....+.-+| .+..++.++ .++.+..+|..+++..
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~---- 279 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV---- 279 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE----
Confidence 344444444 8999999999987655431110 000111112 234566655 6899999999988643
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
....... ... .. ..+..|+.++.+|.++.+|..+++.+-.
T Consensus 280 -W~~~~~~-~~~-~~-------~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 280 -WKREYGS-VND-FA-------VDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred -EeecCCC-ccC-cE-------EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 2211111 001 11 2456788888999999999999987643
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=3.4e-06 Score=76.52 Aligned_cols=197 Identities=16% Similarity=0.226 Sum_probs=109.1
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+||||+.+||.+...|+|+|||+....+ ..+....... +.....+..+.+.......+. ..-+++
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~-----------~d~~~Aiagl~Fl~~~~s~~w---s~ELlv 114 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFP-----------GDLSDAIAGLIFLEYKKSAQW---SYELLV 114 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccC-----------CccccceeeeEeecccccccc---ceeEEE
Confidence 9999999999999999999999975443 3443211100 112223333333332211110 334677
Q ss_pred EECCCeEEEEEccCC--e---E--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-----------EEEEeCCCCceee
Q 008041 92 GTGGGDVLALAVSAG--Q---L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----------VCEIDPLTGSLLG 153 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~--~---~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----------v~iwd~~~~~~~~ 153 (579)
-+..|.++-|-+..+ + . ...+...+...|.++.|+|..+.|+.|+.... +..|.+-++.+
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P-- 192 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP-- 192 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCC--
Confidence 777888777766432 1 1 12233345678999999999888877763221 22222221111
Q ss_pred EeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 154 KFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
....+...+.-+.....+-.+|.+-+.+...........|..|..||||+.|++.. .+|.|.+|++.+-.
T Consensus 193 ---------yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 193 ---------YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSLR 262 (282)
T ss_pred ---------cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcch
Confidence 11111111111111111223333333222222223457799999999999999987 69999999998865
Q ss_pred cc
Q 008041 234 KQ 235 (579)
Q Consensus 234 ~~ 235 (579)
.+
T Consensus 263 ~~ 264 (282)
T PF15492_consen 263 LQ 264 (282)
T ss_pred hh
Confidence 43
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=5.1e-06 Score=78.07 Aligned_cols=188 Identities=21% Similarity=0.282 Sum_probs=124.3
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 13 fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
..+++.++++++.++.|..||..+|+.+.++.... .+.. . +. . .+..++++
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~--------------~-------~~-~------~~~~v~v~ 82 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISG--------------A-------PV-V------DGGRVYVG 82 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGS--------------G-------EE-E------ETTEEEEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccc--------------e-------ee-e------cccccccc
Confidence 34467778888899999999999999988776311 1110 0 00 0 16678888
Q ss_pred ECCCeEEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008041 93 TGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-------- 161 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-------- 161 (579)
+.++.++.+|..+|+.+++...... ..........++..++.+..++.|..+|+.+|+.+..+......
T Consensus 83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSF 162 (238)
T ss_dssp ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence 8999999999999999988422111 11222333334778888888999999999999998887664422
Q ss_pred --eeEEEEccCCCEEEEEC-Ce-EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 162 --ISCMAVSSDGKMLATAA-GQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 162 --v~~l~~~p~g~~l~~~~-~~-i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
+.+-....++..+++.. +. +.+ |..+++.+.... ...+.. ....++..++.++ .++.+..||+.+++.
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp TTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred cccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 11222333555555554 64 555 999998664333 223333 1446677888877 799999999999874
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=1.4e-07 Score=88.82 Aligned_cols=160 Identities=11% Similarity=0.133 Sum_probs=108.3
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCCCCeeEEEEccCCCEEEEEC--C---eEEEEECCCC
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH 189 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~---~i~vwd~~~~ 189 (579)
.+..+..++.+++++.+..+....++++.... ....+.. ....+++.+..+......+. | .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556678888889988888887777765443 2222222 22345566655555555544 4 5666665554
Q ss_pred eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE
Q 008041 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 190 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (579)
.+ ..+-||-+.+..++|+||+++++++- .|..|++-........ ..+-++|... ++..+. -+++.|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~eF-VS~isl------~~~~~LlS 210 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKEF-VSTISL------TDNYLLLS 210 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHhh-eeeeee------ccCceeee
Confidence 43 34568999999999999999998875 7999998776654332 2234445444 444444 35677999
Q ss_pred EEcCCeEEEEEcCCceeecccC
Q 008041 270 ISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
++.|+++++||+.+|+.+....
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999999986544
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=3e-06 Score=75.61 Aligned_cols=187 Identities=13% Similarity=0.074 Sum_probs=127.1
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEe-ccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
.+||.||.-|...+|...+.+....+ ..+...+.- ... -|. ...-+..++.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~---~~r----------~cd-------------~~~~~~i~sndh 138 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL---VKR----------YCD-------------LKFPLNIASNDH 138 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhh---hhh----------hcc-------------cccceeeccCCc
Confidence 48999999999999998866543222 111111110 000 000 023368888999
Q ss_pred eEEEEEccCCeEEEEecCCCCCC--EEEEEEccCCCEEEEEeCCCcEEEEeCCCC-c-eeeEe-ecCCCCeeEEEEccCC
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGG--VSAISFATHGSCIYSAGADGMVCEIDPLTG-S-LLGKF-RASTKGISCMAVSSDG 171 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~-~~~~~-~~~~~~v~~l~~~p~g 171 (579)
++++.++..+...... |... +.++.+++|++++++.+....|..|.+... + .+.+. ....+.=.+..|+...
T Consensus 139 t~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~ 215 (344)
T KOG4532|consen 139 TGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND 215 (344)
T ss_pred ceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence 9888888766543232 3333 889999999999999999999999987643 2 22222 2223344678999999
Q ss_pred CEEEEEC--CeEEEEECCCCeeeE-----EeecCCCCEEEEEEecCCC--EEEEEecCCCeEEEEEcCCCcc
Q 008041 172 KMLATAA--GQLKTFNCSDHKKMQ-----KFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 172 ~~l~~~~--~~i~vwd~~~~~~~~-----~~~~h~~~v~~l~~s~~~~--~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
..+|++. |++.|||++.....+ +-+.|.+.++.+.|++.|. .|+.+ ..-+.+.+.|+++...
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVN 286 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCce
Confidence 9999998 999999999754322 2256889999999998664 34443 3567899999998764
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=8.4e-09 Score=105.40 Aligned_cols=192 Identities=17% Similarity=0.313 Sum_probs=135.7
Q ss_pred cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q 008041 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCE 143 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~i 143 (579)
..++|+++... .+.|++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.+|..+++.+.-. -..+
T Consensus 1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence 46677777654 677999999999999999999887555 68999999999999999876655333 5778
Q ss_pred EeCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ec---CCCCEEEEEEecCCCEEEE
Q 008041 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~---h~~~v~~l~~s~~~~~l~s 216 (579)
|++.+ +...++|.+ -.++.|+.....-+.|. ....+||++++..+.++ .+ ....-+...|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99863 455555553 36788886544444444 68899999999877663 22 222336789999987764
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
+|| .+||.+..+.. ..+..-..... +.|+|+|..++..++ |||++|.+.+...+..
T Consensus 1247 ---ndG--vLWDvR~~~aI-----h~FD~ft~~~~------G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFTDYGG------GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ---eCc--eeeeeccHHHH-----hhhhhheeccc------ccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence 577 58999987533 22322221121 223499999888765 8999999888766544
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=2.5e-05 Score=73.25 Aligned_cols=201 Identities=14% Similarity=0.187 Sum_probs=134.4
Q ss_pred cceEEEEcc-CCCEEEEEeCCCc-EEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 7 RDILTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 7 ~~l~~~fsp-dg~~lasg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
|.-.++.+| ++..++.+-.-|+ ..+||..+++....+........ | || -.|.+
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---y------GH-------g~fs~--------- 60 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---Y------GH-------GVFSP--------- 60 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---e------cC-------EEEcC---------
Confidence 344558999 5566777777665 67899999998887754322111 0 11 11111
Q ss_pred CCcEEEEEEC-----CCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------------------CCCc
Q 008041 85 GSSLLVLGTG-----GGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGM 140 (579)
Q Consensus 85 ~~~~l~~~~~-----~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------------------~d~~ 140 (579)
++.+|++.-+ .|.|-|||.. +-+.+.++ ..|.-.-..+.+.|||+.|+.+. .+..
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 1666666544 3669999999 44555555 45666677889999998877762 2234
Q ss_pred EEEEeCCCCceeeEee----cCCCCeeEEEEccCCCEEEEEC--C-------eEEEEECCCCeeeEEee-------cCCC
Q 008041 141 VCEIDPLTGSLLGKFR----ASTKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKFS-------GHPG 200 (579)
Q Consensus 141 v~iwd~~~~~~~~~~~----~~~~~v~~l~~~p~g~~l~~~~--~-------~i~vwd~~~~~~~~~~~-------~h~~ 200 (579)
+...|..+|+.+.... -|...|..+++.++|..++..- | -+.+++-.. .+..+. .-.+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNG 217 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCC
Confidence 5666778888877633 2666899999999998777654 2 345554333 222222 2346
Q ss_pred CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.+-+|++++++..+++++-.-+.+.+||..++...
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 78999999999988887777889999999998743
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=1.6e-07 Score=83.10 Aligned_cols=188 Identities=12% Similarity=0.193 Sum_probs=111.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCceeeEeecCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~-----~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
.+.++++..||.+.+++...-... .++..-|.+ -.+.++...++.+.++. .-+..+.|+++..+.+..-.-..
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 566899999999999987752111 111111221 11222333444444432 23345666665433222211122
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECCCCee-eEEeecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEcCCCcc
Q 008041 160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~-~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
..|.+++-+|..+.++.++ |.+-+||.++... ...+..|+.++..+-|+|. +..|++++ +||.+..||..+.-.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~~~l 258 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDASTTFL 258 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCCceE
Confidence 3599999999776665554 8999999998743 3445789999999999985 55788887 899999999874210
Q ss_pred c-----c-------ceee-----eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 235 Q-----S-------ASCV-----LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 235 ~-----~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
. . ...+ ...--+....+...|. --|..|++|+.-+-|++++
T Consensus 259 ~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD-----V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 259 SISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD-----VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EecCccccccccccCCcccceEeeeccccccceeeeeee-----ccCceEEeccccceEEEec
Confidence 0 0 0000 0000112222333333 5678888888888888874
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.70 E-value=6.9e-06 Score=90.74 Aligned_cols=187 Identities=12% Similarity=0.200 Sum_probs=123.9
Q ss_pred CcEEEEEECCCeEEEE----EccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---------
Q 008041 86 SSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--------- 152 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iw----d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--------- 152 (579)
...++++..+|.|.+. +..+... .....-..+|.+++|+||+..++..+.++++.+.+- +..++
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD 163 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence 5668999999999998 5555443 222334578999999999999999988988877642 11111
Q ss_pred ---------------eEeec------------------------CCCCeeEEEEccCCCEEEEEC--------CeEEEEE
Q 008041 153 ---------------GKFRA------------------------STKGISCMAVSSDGKMLATAA--------GQLKTFN 185 (579)
Q Consensus 153 ---------------~~~~~------------------------~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd 185 (579)
..|+| ....-..|+|-.||.++|+.+ ..++||+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 11111 122345788999999999875 3789998
Q ss_pred CCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC
Q 008041 186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 186 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
- .|+...+-..-.+--.+++|.|.|+++++..... ..|.+|.-..-+. .............+..+.|+ +|
T Consensus 244 R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh--geF~l~~~~~~~~v~~l~Wn-----~d 315 (928)
T PF04762_consen 244 R-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH--GEFTLRFDPEEEKVIELAWN-----SD 315 (928)
T ss_pred C-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe--eeEecCCCCCCceeeEEEEC-----CC
Confidence 4 4765544444444456789999999988875322 3455555433321 12222222445566778887 89
Q ss_pred CcEEEEEEcCCeEEEEEcCCc
Q 008041 264 GLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~ 284 (579)
+..|+....|. |.+|-..+.
T Consensus 316 s~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCEEEEEecCC-ceEEEeeCC
Confidence 99999977655 999976554
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=6.8e-05 Score=66.96 Aligned_cols=142 Identities=21% Similarity=0.267 Sum_probs=99.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
..+++.|+-.+.+.--|.++|....+-.- ...+.+-+..- ++++++|..+|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-------------------g~RiE~sa~vv----------gdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-------------------GVRIECSAIVV----------GDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-------------------CceeeeeeEEE----------CCEEEEEEccC
Confidence 35777888888888899999988765321 00111111110 78899999999
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc-CCCEEE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA 175 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~ 175 (579)
.+++.+..+|...+.+....+-.+.. ...+++..++.++.|++.+..|.++..++.+.+...+...+-++.| ++.+++
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 99999999998877664332222332 3467899999999999999999999999998887666666666777 666555
Q ss_pred EEC-CeEEEEECCC
Q 008041 176 TAA-GQLKTFNCSD 188 (579)
Q Consensus 176 ~~~-~~i~vwd~~~ 188 (579)
+.. |.+.--....
T Consensus 153 a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 153 AITAGAVLAVTKNP 166 (354)
T ss_pred EeccceEEEEccCC
Confidence 544 6554444433
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.4e-05 Score=82.54 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=128.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+|++.+..++.|+.||.|.+.+- +-+..+.|+.+...+....+... +..++++
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~--------------------------~~~~L~s 82 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN--------------------------KQNFLFS 82 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc--------------------------CceEEEE
Confidence 78999999999999998888763 34444666655444222222211 1345555
Q ss_pred EECCC-----eEEEEEccCC------eEE--EEec----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe--CCC--Cc
Q 008041 92 GTGGG-----DVLALAVSAG------QLK--WRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLT--GS 150 (579)
Q Consensus 92 ~~~~g-----~i~iwd~~~~------~~~--~~~~----~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd--~~~--~~ 150 (579)
...|+ .+++|++..- .++ .++. .....++.+++.+.+-+.+++|-.||.|..+. +.. |.
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence 54443 3999998642 222 1111 12356789999999988999999999999884 221 22
Q ss_pred eeeEeecCCCCeeEEEEccCCCE--EEEECCeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 151 LLGKFRASTKGISCMAVSSDGKM--LATAAGQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~--l~~~~~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
...-......+|+.+++..+++. +++....|.+|.+....+ ...+..|..++.|-.|++....+++++ +..+.+|
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY 240 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFY 240 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEE
Confidence 22222234559999999999887 444459999999984432 445677788899999987665466654 5689999
Q ss_pred EcCCCc
Q 008041 228 RTDGVK 233 (579)
Q Consensus 228 d~~~~~ 233 (579)
+....+
T Consensus 241 ~sd~~~ 246 (933)
T KOG2114|consen 241 DSDGRG 246 (933)
T ss_pred cCCCcc
Confidence 988654
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.6e-07 Score=86.52 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=107.4
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeeEeecCCCCeeE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~ 164 (579)
++.+.+-.|-+-|+.+|-.. .+. ..+.|.++.|+..++.++.|+.+|.|..+|++.+ .+...+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q--sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ--SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc--ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 44555566788888777542 222 4567999999998999999999999999999864 3344444 7888999
Q ss_pred EEEcc-CCCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEE--EEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 165 l~~~p-~g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~l--~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
+..-. ++++|.+.+ |.|++||++--++ ++++.||.+.-.-+ -+.+....++++| +|...++|.++.+...
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence 88776 666666666 9999999997766 89999997654443 3456667888877 7999999999998754
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.58 E-value=2.2e-05 Score=73.62 Aligned_cols=194 Identities=19% Similarity=0.290 Sum_probs=132.5
Q ss_pred CcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEE--EEEEccCCCEEEEEe-----CCCcEEEEeCC-CCceeeEee
Q 008041 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVS--AISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~l~s~~-----~d~~v~iwd~~-~~~~~~~~~ 156 (579)
...++++-.=|+ ..+||+.+++....+.. ..+.-. --.|++||++|++.= ..|.|-+||.. +.+.+..|.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 556777777777 88999999988755532 122111 247999999999863 45789999998 667888898
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-C-------------------eEEEEECCCCeeeEE--e--ecCCCCEEEEEEecCCC
Q 008041 157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-~-------------------~i~vwd~~~~~~~~~--~--~~h~~~v~~l~~s~~~~ 212 (579)
.+.-....+.+.|||+.|+++. | ++...|..+|+.+.+ + .-|...|..+++.++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 8877888999999998888775 1 355567788887766 4 34778899999999987
Q ss_pred EEEEEecCCCe-------EEEEEcCCCccccceeeeee-----ecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEE
Q 008041 213 YVLSSAVGERY-------IALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW 279 (579)
Q Consensus 213 ~l~s~~~~d~~-------i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw 279 (579)
.++.. ...+- |-+++.... . ..+.. ..-...+.+++++ +++.++++.+- -|++.+|
T Consensus 176 V~~a~-Q~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 176 VAFAM-QYQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EEEEE-ecCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence 55443 23331 233332221 1 00111 1122455667776 88888877765 6799999
Q ss_pred EcCCceeecccC
Q 008041 280 YGQNIEELRNTK 291 (579)
Q Consensus 280 d~~~~~~~~~~~ 291 (579)
|..+++.+....
T Consensus 245 d~~tg~~~~~~~ 256 (305)
T PF07433_consen 245 DAATGRLLGSVP 256 (305)
T ss_pred ECCCCCEeeccc
Confidence 999998876543
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=1.7e-06 Score=89.56 Aligned_cols=183 Identities=15% Similarity=0.223 Sum_probs=134.0
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
++..++.|+-...+..+|+.+.+......- ..+.|+-++. +++.+++|...|+|.+-|..+.+.+.+|.+|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 466788888888899999999887654422 2334666665 7789999999999999999999999999999999976
Q ss_pred EEEccCCCEEEEEC-----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCC
Q 008041 165 MAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 165 l~~~p~g~~l~~~~-----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~ 232 (579)
+.. .|+.|++++ .-|+|||++..+.+.-+.-+.++ .-+.|+|.= ..+++++ ..|...+-|..+.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence 665 588999887 14899999988877666656555 567888853 3455555 5788888884433
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
.... ..++........+....++ ++|..++.|..+|.|.+|-
T Consensus 299 sNP~-~~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPP-AGVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCc-cceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence 2111 1122222222335666676 8999999999999999997
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.52 E-value=4.7e-07 Score=57.72 Aligned_cols=39 Identities=23% Similarity=0.604 Sum_probs=36.3
Q ss_pred CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
++++.++.+|.++|.+++|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 467889999999999999999999999998 799999997
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.51 E-value=0.00017 Score=65.66 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=117.2
Q ss_pred EEEEECCCeEEEEEccCCe--EEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC------
Q 008041 89 LVLGTGGGDVLALAVSAGQ--LKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------ 158 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~--~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------ 158 (579)
+++...|..|.|-..+.+- .+. .+.+.....-.-++|+||+..|+.+...|+|++||+.. ..+..+...
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d 89 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGD 89 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCc
Confidence 4555556666666555421 111 23233334567899999999999999999999999864 433343321
Q ss_pred -CCCeeEEEEccCC-------CEEEEEC-CeEEEEECCC-----CeeeEEee---cCCCCEEEEEEecCCCEEEEEecCC
Q 008041 159 -TKGISCMAVSSDG-------KMLATAA-GQLKTFNCSD-----HKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 159 -~~~v~~l~~~p~g-------~~l~~~~-~~i~vwd~~~-----~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d 221 (579)
...|..+.|.+-- .+++... |.++-|-+.. .+...+|. .+...|.++.++|..+.|+++|...
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 2356666665421 3455544 7666665422 23333332 2467899999999999888877533
Q ss_pred C----------eEEEEEcCCCcccc---------------ceeeeee---------ecCceeEEeEEecCCcccCCCcEE
Q 008041 222 R----------YIALWRTDGVKKQS---------------ASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 222 ~----------~i~vwd~~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
. -+..|.+-.+..-- ....+.+ ......+--+.. +|||..|
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----SPdg~~L 244 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----SPDGSLL 244 (282)
T ss_pred CCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE-----CCCCCEE
Confidence 3 25667654432110 0000000 011112222333 3999999
Q ss_pred EEEEcCCeEEEEEcCCceeecc
Q 008041 268 LAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
|+...+|.|.+|++.+.++.+.
T Consensus 245 a~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 245 ACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred EEEEcCCeEEEEecCcchhhcc
Confidence 9999999999999998877654
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=1.4e-06 Score=77.38 Aligned_cols=148 Identities=13% Similarity=0.170 Sum_probs=93.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcee-eEeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCC
Q 008041 128 HGSCIYSAGADGMVCEIDPLTGSLL-GKFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHP 199 (579)
Q Consensus 128 ~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~ 199 (579)
-++.+++++.||.+.+++.+.-..+ +.+......-.+.++...++.+.++. +..+.|+++..+.+..-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 3557899999999999997642111 11111111222334445667777665 456777776544322222222
Q ss_pred CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008041 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (579)
Q Consensus 200 ~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (579)
..|++++-+|..+.++.+|.+||.+.+||.+..... ...-..|...+....+.. .++..|+++++||.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHp-----k~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHP-----KNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccC-----CCchheeEecCCCcEEEE
Confidence 348999999988877777779999999999987432 111122444444444443 577899999999999999
Q ss_pred EcCC
Q 008041 280 YGQN 283 (579)
Q Consensus 280 d~~~ 283 (579)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9765
No 308
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=2.8e-06 Score=85.56 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=120.3
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------ceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008041 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG---------------SLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~---------------~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-- 178 (579)
......|+.|+.+..++++|+.||.+++.-+.+. ..-+++.+|...|.-+.|+.+.+.+-+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4456889999999999999999999999876542 12356789999999999999888888887
Q ss_pred CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEec
Q 008041 179 GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256 (579)
Q Consensus 179 ~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (579)
|.|.+|-+-.|.-...+ ....+.|.++.|+.||..+...- .||.|.+=.++.... +..+-.......+.|+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY-eDGavIVGsvdGNRI------wgKeLkg~~l~hv~ws 165 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY-EDGAVIVGSVDGNRI------WGKELKGQLLAHVLWS 165 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE-ccCCEEEEeecccee------cchhcchheccceeec
Confidence 99999998877654433 23457799999999999988875 799998877776542 2222223333455666
Q ss_pred CCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 257 NGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+|.+.++.+-.+|.+++||.+.
T Consensus 166 -----~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 166 -----EDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred -----ccHHHHHhhhcCCcEEEecccc
Confidence 8989988898999999999653
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.1e-05 Score=82.10 Aligned_cols=188 Identities=12% Similarity=0.159 Sum_probs=128.3
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeE
Q 008041 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (579)
Q Consensus 19 ~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i 98 (579)
.||++.-.|+|.+||...+..+..++.+.. .+..+.|.+..... ..++++-.....+
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~------------------~~qdl~W~~~rd~S-----rd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSND------------------SVQDLCWVPARDDS-----RDVLLAIHGSSTL 137 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCc------------------chhheeeeeccCcc-----hheeEEecCCcEE
Confidence 567777789999999999988887765443 33456666654331 3567777788889
Q ss_pred EEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCceeeEeecCCC----------
Q 008041 99 LALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-------TGSLLGKFRASTK---------- 160 (579)
Q Consensus 99 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~-------~~~~~~~~~~~~~---------- 160 (579)
.+||..+|+..++...+| ....|+.+.| |.+.+..-+..|.|.+.+.- .|+.++.-..|..
T Consensus 138 vLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at 216 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT 216 (1062)
T ss_pred EEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence 999999999998875544 4677899998 66667777777877776642 1233322222211
Q ss_pred ---------------CeeEEEEccCCCEEEE-EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC--EEEEEecCC
Q 008041 161 ---------------GISCMAVSSDGKMLAT-AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK--YVLSSAVGE 221 (579)
Q Consensus 161 ---------------~v~~l~~~p~g~~l~~-~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~~d 221 (579)
.....+|+|.-+.++. .- ..+.++|++-..++....-..+.+.-+.+-|+++ .|++. ..|
T Consensus 217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl-H~n 295 (1062)
T KOG1912|consen 217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL-HSN 295 (1062)
T ss_pred cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE-ecC
Confidence 0113466775443333 33 8999999998888877766667777788888764 45554 479
Q ss_pred CeEEEEEcCC
Q 008041 222 RYIALWRTDG 231 (579)
Q Consensus 222 ~~i~vwd~~~ 231 (579)
|.+.+|--+.
T Consensus 296 G~ltirvrk~ 305 (1062)
T KOG1912|consen 296 GRLTIRVRKE 305 (1062)
T ss_pred CeEEEEEeec
Confidence 9999997654
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=6.9e-07 Score=56.95 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=33.2
Q ss_pred EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 108 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd 145 (579)
++..+ .+|.++|++++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 44344 78999999999999999999999999999997
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-05 Score=75.32 Aligned_cols=239 Identities=14% Similarity=0.098 Sum_probs=136.5
Q ss_pred CCCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
....||++ +|||..+ ++..++.+.+|+|.|+++..++..+..+ ...-+++|.-.+
T Consensus 192 ~g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------------------~~~wSC~wDlde--- 247 (463)
T KOG1645|consen 192 EGSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------------NQIWSCCWDLDE--- 247 (463)
T ss_pred cchhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-------------------CCceeeeeccCC---
Confidence 44668888 9999887 7888999999999999998887766533 233455665544
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecC--CCCCCEEEEEEcc------CCCEEEEEeCCCcEEEEeCC--CCc
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFAT------HGSCIYSAGADGMVCEIDPL--TGS 150 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~------~~~~l~s~~~d~~v~iwd~~--~~~ 150 (579)
..+|+.|..+|.|.+||++..+.....+. -...+|..++.-+ .|..++..+.+ ...|++. .+.
T Consensus 248 -----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 248 -----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC 320 (463)
T ss_pred -----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence 67899999999999999987553211111 1233455444322 33334333333 4556543 122
Q ss_pred eeeEee-cCCCCeeEEEEccCCCEEEEEC---------CeEEE-EECCCCeeeEEe-ecCCC-C---E---EEEEEecCC
Q 008041 151 LLGKFR-ASTKGISCMAVSSDGKMLATAA---------GQLKT-FNCSDHKKMQKF-SGHPG-A---V---RFMTFSDNG 211 (579)
Q Consensus 151 ~~~~~~-~~~~~v~~l~~~p~g~~l~~~~---------~~i~v-wd~~~~~~~~~~-~~h~~-~---v---~~l~~s~~~ 211 (579)
...+.. +..+.+.++..++..+.++... ..|-. -|-..|..+... .++.+ + + ..+.-.++.
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 222221 2345666777777556655543 11211 122344333222 12211 1 1 112224566
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcC
Q 008041 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 282 (579)
++++..+...+.+.+||+.+.+.. .++.-.........+. -++ .+|++- .|..++||..+
T Consensus 401 n~iv~~gd~tn~lil~D~~s~evv-----Q~l~~~epv~Dicp~~-----~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 401 NYIVVVGDSTNELILQDPHSFEVV-----QTLALSEPVLDICPND-----TNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred cEEEEecCCcceeEEeccchhhee-----eecccCcceeecceee-----cCCcchhhhe-ecceEEEEecC
Confidence 777777766688999999987633 4444444445544443 333 455544 45678888644
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.5e-06 Score=80.20 Aligned_cols=155 Identities=10% Similarity=0.093 Sum_probs=110.4
Q ss_pred EEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 11 TSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
|+||-+ |-. ++.+.+..|-+-|+++|... .|. ..+.+....|+.. +++
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s---------------------------~nL 266 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGS---------------------------DNL 266 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhccc---------------------------CCe
Confidence 356543 333 44455667888888877543 233 3344444444443 788
Q ss_pred EEEEECCCeEEEEEccCC-----eEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCce---eeEeecCC
Q 008041 89 LVLGTGGGDVLALAVSAG-----QLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSL---LGKFRAST 159 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~ 159 (579)
++.|..+|.|..+|++.+ .+...+ -|.+.|+++..-. +++++++.+.+|+|++||++--++ +..+.+|-
T Consensus 267 v~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred eEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 999999999999999875 233333 3889999998777 788899999999999999987666 88888887
Q ss_pred CC--eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041 160 KG--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 160 ~~--v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~ 197 (579)
+. ..-+.+.+....+++++ ...++|.++.+..+.+++-
T Consensus 345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 63 22334456556666666 6789999999999888763
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.43 E-value=9.4e-05 Score=74.77 Aligned_cols=217 Identities=11% Similarity=0.102 Sum_probs=117.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-.+.++|+|++++.++ ||.-.|+.....+....- ......|.+ .+.
T Consensus 36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G-----------------------~g~~~vw~~----------~n~ 81 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFG-----------------------SGLSFVWSS----------RNR 81 (443)
T ss_dssp SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEE-----------------------E-SEEEE-T----------SSE
T ss_pred eeEEECCCCCEEEEEc-CCEEEEEEccCCcccccC-----------------------ceeEEEEec----------Ccc
Confidence 3459999999999866 788888885544443211 233566766 234
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++-..++.|.++.--+++....+... ..+..+-. |..|...+.+ .|.+||..+++.++.+... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 777777888999743333222222211 23444433 7777766544 8999999999999998743 48999999
Q ss_pred cCCCEEEEEC-CeEEEEECCCC-----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 169 SDGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 169 p~g~~l~~~~-~~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
++|++++..+ ..+++++.... ..+..+..-...|.+..|..+ -++++ . .. .++. +..++..
T Consensus 154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T-~~-~lkY--l~~Ge~~- 226 (443)
T PF04053_consen 154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-T-SN-HLKY--LVNGETG- 226 (443)
T ss_dssp TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---TT-EEEE--EETTEEE-
T ss_pred CCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-c-CC-eEEE--EEcCCcc-
Confidence 9999999988 78888875433 023333333567889999876 34444 3 23 6776 4444422
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.+..+ +..+..+... +....+.....|+.+..+.++..
T Consensus 227 --~i~~l---d~~~yllgy~-----~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 227 --IIAHL---DKPLYLLGYL-----PKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp --EEEE----SS--EEEEEE-----TTTTEEEEE-TT--EEEEE--HH
T ss_pred --eEEEc---CCceEEEEEE-----ccCCEEEEEECCCCEEEEEECHH
Confidence 23333 3333344443 55677888888888887765433
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=1.2e-06 Score=88.37 Aligned_cols=199 Identities=21% Similarity=0.287 Sum_probs=130.7
Q ss_pred CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.+|+++ -|.|.. ..+|+++.|..+..||+++-.. +..+... ....+-+.|...+|.
T Consensus 114 sraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w------------------~s~asqVkwnyk~p~- 172 (1081)
T KOG0309|consen 114 SRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW------------------RSAASQVKWNYKDPN- 172 (1081)
T ss_pred ccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeecc------------------cccCceeeecccCcc-
Confidence 4667555 888865 5889999999999999986542 2222111 123345667665544
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEee-cC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFR-AS 158 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~ 158 (579)
+++.+....|.+||.+.|.......++|...|..+.|+.- ...+.+++.|++|+.||........... ..
T Consensus 173 --------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 173 --------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred --------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 5666677779999999887655556789999999999763 2358899999999999976443222211 12
Q ss_pred CCCeeEEEEccCCCEEEE----ECCeEEE---------EECCC-CeeeEEeecCCCCEEEEEEec--------CCC--EE
Q 008041 159 TKGISCMAVSSDGKMLAT----AAGQLKT---------FNCSD-HKKMQKFSGHPGAVRFMTFSD--------NGK--YV 214 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~----~~~~i~v---------wd~~~-~~~~~~~~~h~~~v~~l~~s~--------~~~--~l 214 (579)
..+|..-.+.|=|+-... |++.+.+ |++.+ .+.+.+|.||...|....|-. |.+ .|
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence 336666666665443222 2233333 33333 356889999999887766632 222 46
Q ss_pred EEEecCCCeEEEEEcCC
Q 008041 215 LSSAVGERYIALWRTDG 231 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~ 231 (579)
++=+ .|.++++|-+..
T Consensus 325 VTWS-kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWS-KDQTLRLWPIDS 340 (1081)
T ss_pred EEee-cCCceEeeeccH
Confidence 6665 899999998754
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=2.6e-07 Score=94.88 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=128.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.|++||-+.++|+.|+..|.|++|++.+|.......+|.++++.+.-+.+ +..
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d---------------------------gs~ 1157 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD---------------------------GST 1157 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC---------------------------cce
Confidence 57799999999999999999999999999998888888887765444433 444
Q ss_pred EEEEE-CCC-eEEEEEccCCeEEEEecCCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ec---CCCC
Q 008041 89 LVLGT-GGG-DVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RA---STKG 161 (579)
Q Consensus 89 l~~~~-~~g-~i~iwd~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~---~~~~ 161 (579)
.++.+ .+. ...+|+...--. ..|+ ..-.++.|+...+.-+.|..-....+||++++....++ .+ ....
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~-----~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGG-----PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred eeeeccccCchHHHhccccccC-----ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 44433 333 378899875221 1132 23567888775544344444456889999999877763 32 1123
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
-++..|+|+.++++--+ .+||++..+.++.|...+.. ..=.|+|.|..++.-+ .|||+++-+.
T Consensus 1233 ~n~a~FsP~D~LIlndG---vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS------EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILNDG---VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS------EIWDMRTFKL 1295 (1516)
T ss_pred ccccccCCCcceEeeCc---eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec------hhhhhHHHHH
Confidence 37889999988776443 68999988888777654422 2347999999888754 4899998653
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2.5e-05 Score=80.19 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=117.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+++.|+.+|.|++++.+..- . +. ..|... ..+|.++++|+.||+|.+..+.+.+...++. ...++.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 6789999999999999987653 1 11 235443 5689999999999999999998888777665 35689999
Q ss_pred EEccC-----CCEEEEEC--CeEEEEECCC-C-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 166 AVSSD-----GKMLATAA--GQLKTFNCSD-H-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 166 ~~~p~-----g~~l~~~~--~~i~vwd~~~-~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+++|+ .+.+++|+ | +.++.-+- | +.-..+....++|.++.|. |.+++-+. ++| |++||...++...
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDG-VKVYDTPTRQRLT 193 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCC-cEEEeccccceee
Confidence 99997 57888888 6 77765331 1 1111355567999999996 67888875 454 9999998876431
Q ss_pred ce-eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 237 AS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
.. .......++.......|. +...|+. +...+|+|..++
T Consensus 194 ~i~~p~~~~R~e~fpphl~W~------~~~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHWQ------DEDRLVI-GWGDSVKICSIK 233 (846)
T ss_pred ccCCCCCCCCcccCCCceEec------CCCeEEE-ecCCeEEEEEEe
Confidence 00 000111122222334453 3344444 444578888776
No 317
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.33 E-value=0.00016 Score=75.40 Aligned_cols=234 Identities=18% Similarity=0.232 Sum_probs=137.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccc-cccccccccccccccceEEeeecccccccccCCcEEEEEE---
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTS-LYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT--- 93 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~--- 93 (579)
..++.++.+|.|.-+|.++|+.+..+.......... .-+.+ .. .+..+++++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP------------~v------------~~~~v~vg~~~~ 166 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP------------TI------------VKKLVIIGSSGA 166 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC------------EE------------ECCEEEEecccc
Confidence 577778889999999999999998876332110000 00000 00 034455654
Q ss_pred ------CCCeEEEEEccCCeEEEEecCCCCC-------------------CE-EEEEEccCCCEEEEEeCCC--------
Q 008041 94 ------GGGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG-------- 139 (579)
Q Consensus 94 ------~~g~i~iwd~~~~~~~~~~~~~h~~-------------------~V-~~l~~~~~~~~l~s~~~d~-------- 139 (579)
.+|.++.+|..+|+.+++....... .| ....+.+.+..++.++.++
T Consensus 167 ~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 167 EFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred ccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCc
Confidence 3578999999999998876432211 11 1234455566777777665
Q ss_pred ----------cEEEEeCCCCceeeEeecCCCCe------eEEEEc----cCCC---EEEEEC--CeEEEEECCCCeeeEE
Q 008041 140 ----------MVCEIDPLTGSLLGKFRASTKGI------SCMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 140 ----------~v~iwd~~~~~~~~~~~~~~~~v------~~l~~~----p~g~---~l~~~~--~~i~vwd~~~~~~~~~ 194 (579)
.|.-+|..+|+.+..++...... ....+. -+|. .++.++ |.++.+|.++|+.+..
T Consensus 247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 79999999999988765321111 111111 1343 455554 8999999999998876
Q ss_pred eecCCCCEEEEEEecCCCEEEEEe-----------------cCCCeEEEEEcCCCccccceeeeeeecC---------ce
Q 008041 195 FSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEHP---------AV 248 (579)
Q Consensus 195 ~~~h~~~v~~l~~s~~~~~l~s~~-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~ 248 (579)
..... ..+..+| + .++..+ ..++.+.-.|..+++.. ...... ..
T Consensus 327 ~~~~~---~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~-----W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 327 RPEVE---QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV-----WEKREGTIRDSWNIGFP 396 (488)
T ss_pred eEeec---cccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-----eEeeCCccccccccCCc
Confidence 54211 1123333 2 222211 13567888888887643 222111 00
Q ss_pred eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
....... ..+..|++++.||.++.+|.++|+.+-..+
T Consensus 397 ~~~~~~~------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 397 HWGGSLA------TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred ccCcceE------ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 0000000 245788899999999999999999886554
No 318
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.31 E-value=0.00068 Score=67.65 Aligned_cols=304 Identities=12% Similarity=0.084 Sum_probs=146.3
Q ss_pred ccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 14 spdg~~lasg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
|||+++++... ..+.+.|||+.+++....... ........|.|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------------------~~~~~~~~~sP~-------- 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------------------PPKLQDAKWSPD-------- 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------------------ETTBSEEEE-SS--------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------------------ccccccceeecC--------
Confidence 78999888742 246789999999876653321 123334555554
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCC----------------CCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h----------------~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~ 147 (579)
+..++... +++|++++..++........+- -+.-.++.|+|||++|+... .+..|..+.+.
T Consensus 54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 45555554 5789999988886554333330 11235678999999987765 34444444431
Q ss_pred CCceeeEeecCCC---CeeEEEEccCCCEEEEECCeEEEEECCCCeeeE-Eee----cCCCCEEEEEEecCCCEEEE-Ee
Q 008041 148 TGSLLGKFRASTK---GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KFS----GHPGAVRFMTFSDNGKYVLS-SA 218 (579)
Q Consensus 148 ~~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~-~~~----~h~~~v~~l~~s~~~~~l~s-~~ 218 (579)
. +..... .+..+.+---|.-- ..-.+.++|+.+++... ... .-...+..+.|.++++.++. -.
T Consensus 132 ~------~~~~~~~yp~~~~~~YPk~G~~n--p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 132 D------YSPPDSQYPEVESIRYPKAGDPN--PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp E------ESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred c------cCCccccCCcccccccCCCCCcC--CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 1 111111 22333332111111 01257788998886532 111 23456889999999983333 32
Q ss_pred cCCC---eEEEEEcCCCccccceeeeeeecCcee---EEeEEecCCcccCCCcEEEEEEcCC--eEEEEEcCCceeeccc
Q 008041 219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRNT 290 (579)
Q Consensus 219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 290 (579)
..+. .+.++|..++... .+........+ .....+. ..++.++.....|| +|++++...+.... +
T Consensus 204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~~~-l 275 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKPRQ-L 275 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEEEE-S
T ss_pred ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEcccccceec-c
Confidence 2222 4666777776533 22222222211 1122221 03445555555677 56666776665322 2
Q ss_pred CCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008041 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (579)
......+.....+..+++. ..++|..++ +..-++...... .....+.+...........|||||++++.++|
T Consensus 276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2112112111112223221 333443322 223344444322 12333444444433358999999999855554
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00011 Score=75.62 Aligned_cols=173 Identities=10% Similarity=0.140 Sum_probs=124.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+++|+.|.-+|.|++++.... ....+. |... +. .+.++++|+.|
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~-~~~~~~-~s~~---------------------------~~------~Gey~asCS~D 92 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN-PKTNFD-HSSS---------------------------IL------EGEYVASCSDD 92 (846)
T ss_pred hcceeeeccccceEEEEecCCc-cccccc-cccc---------------------------cc------CCceEEEecCC
Confidence 3679999999999999987633 222221 1110 11 28899999999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCC---CCceeeEeecCCCCeeEEEE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL---TGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~l~~ 167 (579)
|+|.|-.+-+.+....+ ....++.+++++|+ .+++++|+.-| +.++.-. ....+ ......++|.++.|
T Consensus 93 Gkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW 168 (846)
T ss_pred CcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe
Confidence 99999999888775444 24468999999997 46799999888 7776521 11222 35556789999999
Q ss_pred ccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCE------EEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 168 SSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAV------RFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 168 ~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v------~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
. |+++|-++ --|++||+.+++.+..++.....+ ..+.|.++. .|+.| +..+|++..++.+
T Consensus 169 ~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 169 R--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG--WGDSVKICSIKKR 235 (846)
T ss_pred c--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe--cCCeEEEEEEecc
Confidence 7 88999998 679999999988877665333322 356787765 45555 6678999999843
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.26 E-value=1.8e-05 Score=82.22 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=124.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..+..|+--..+..+|..+++..+...-..+ .++.+.. ++..+..|...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~------------------~v~imR~-----------Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS------------------GVTIMRY-----------NNRNLFCGDTR 196 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC------------------ceEEEEe-----------cCcEEEeeccc
Confidence 345566676666777888888776654321111 1111111 26889999999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
|+|.+-|+.+.+.+.++ .+|++.|.++.. .|+.+++||. |.-|++||++..+.+.-+.-+.++ .-+.
T Consensus 197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 99999999999998777 789999998776 6889999874 455899999877766555544443 4567
Q ss_pred EccCC-CEEEEEC--CeEEEEECC---CC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 167 VSSDG-KMLATAA--GQLKTFNCS---DH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 167 ~~p~g-~~l~~~~--~~i~vwd~~---~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
|+|.- ..+++++ |...+-|.. +. ..+..+......+..+.++++|..++.+- .+|.|.+|.
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence 78742 2333333 899888833 32 11223333445589999999999999876 799999998
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.7e-06 Score=79.07 Aligned_cols=201 Identities=10% Similarity=0.056 Sum_probs=139.7
Q ss_pred CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec--CCC
Q 008041 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA--STK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~--~~~ 160 (579)
..++..++.||.++.|-... +-........|.+.|.+++.+.+|..+.|.+. |..++++|+.+...+.-++- ..+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 67899999999999998765 32222334678889999999999999999777 99999999987765543332 122
Q ss_pred CeeEEEEccCC--CEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC-
Q 008041 161 GISCMAVSSDG--KMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV- 232 (579)
Q Consensus 161 ~v~~l~~~p~g--~~l~~~~---~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~- 232 (579)
.+. ...+|.. ..++++. +.|.++|-...- ....-.-|.++|..+.+.+.+..+++.. ..|.|.-|.....
T Consensus 100 ~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 100 FAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF 177 (558)
T ss_pred ceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence 221 2222221 1444444 899999977543 2333356899999999999999888764 6799999998741
Q ss_pred ccccceeee---------eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 233 KKQSASCVL---------AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 233 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
+.......+ ..........+..|+ |+|..+.+-+.|..|++|+..+++.++.++..
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 111111111 122223345566676 99999999999999999999999988766543
No 322
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.20 E-value=0.00058 Score=61.19 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=119.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
..+++.|+..+.+.--|.++|+.+++..-+ .++-+-+.- -|++++.|+..|.+++.+..+|.....|...+.-=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 577999999999999999999998876543 333332222 36789999999999999999998888877544322334
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeeee
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
...+++..+..|+ ++.+..|.++..++.+.+...+...+-+..| ++...++ . ..|.+---........ ....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~-t~G~vlavt~~~~~~~---~~w~ 174 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-I-TAGAVLAVTKNPYSST---EFWA 174 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-e-ccceEEEEccCCCCcc---eehh
Confidence 5678899999998 8999999999988887664444344445556 4443333 3 3454443333332111 1111
Q ss_pred eecCceeEEe-EEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
.......... .+. +..+..++.||.+.-|+ +.|+++.
T Consensus 175 ~~~~~PiF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvw 212 (354)
T KOG4649|consen 175 ATRFGPIFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVW 212 (354)
T ss_pred hhcCCccccCceec--------cceEEEEEeccEEEEEc-CCCcEEE
Confidence 1111111111 111 35566677788888887 6666665
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.13 E-value=0.00052 Score=74.15 Aligned_cols=193 Identities=13% Similarity=0.178 Sum_probs=126.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+++.|-.+++-++.+..+|.|.+-|..+..... .|.....+.+..|.+. ...
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------vg~vd~GI~aaswS~D---------ee~ 123 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETLELEI-------------------VGNVDNGISAASWSPD---------EEL 123 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEcccccceee-------------------eeeccCceEEEeecCC---------CcE
Confidence 666888888888888899999988877665432 1444556777888775 667
Q ss_pred EEEEECCCeEEEEEc----cCCeEE-------------------EEecCC---------------------CCCCEEEEE
Q 008041 89 LVLGTGGGDVLALAV----SAGQLK-------------------WRLSDC---------------------HPGGVSAIS 124 (579)
Q Consensus 89 l~~~~~~g~i~iwd~----~~~~~~-------------------~~~~~~---------------------h~~~V~~l~ 124 (579)
++..+..+++.+-.- -..+.+ .++ .| ..+.=+++.
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceee-ecchhhhcccccccccccccchhhccCCceEE
Confidence 888888887665432 111000 011 00 011224589
Q ss_pred EccCCCEEEEEe----CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---
Q 008041 125 FATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--- 191 (579)
Q Consensus 125 ~~~~~~~l~s~~----~d-~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~--- 191 (579)
|..||++|++.. .+ ..+++||-+ |..-.+-....+.-.+++|-|.|..+++-. +.|.+|. ++|-.
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~ 280 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGE 280 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccc
Confidence 999999988732 34 789999965 544333222333446899999999999865 5688886 34422
Q ss_pred -eEEeecCCCCEEEEEEecCCCEEEE---EecCCCeEEEEEcCCCc
Q 008041 192 -MQKFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK 233 (579)
Q Consensus 192 -~~~~~~h~~~v~~l~~s~~~~~l~s---~~~~d~~i~vwd~~~~~ 233 (579)
...++....+|..++|+.++..|+. .. ....|++|-+.+-.
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH 325 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence 2223334455899999999998877 33 34459999887653
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.00062 Score=70.10 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCC----C-ceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------
Q 008041 126 ATHGSCIYSAGADGMVCEIDPLT----G-SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------ 191 (579)
Q Consensus 126 ~~~~~~l~s~~~d~~v~iwd~~~----~-~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~------ 191 (579)
.++|++... .++.|.+.|..+ + +.+..+.. ......+.++|||+++++++ +++.|+|+.+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 457887665 367899999987 3 44555553 45678999999999999988 7999999987552
Q ss_pred ------eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 192 ------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 192 ------~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
+.+..--.+| ...+|.++|....+- .-|..|-.|++..
T Consensus 362 ~~~~~vvaevevGlGP-LHTaFDg~G~aytsl-f~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGP-LHTAFDGRGNAYTTL-FLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCc-ceEEECCCCCEEEeE-eecceeEEEehHH
Confidence 3333333333 456899998755554 4789999999876
No 325
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.10 E-value=3.8e-05 Score=70.08 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=122.8
Q ss_pred CcEEEEEECCCeEEEEEccCCe-EEEEe---cCCCC------------CCEEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQ-LKWRL---SDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~-~~~~~---~~~h~------------~~V~~l~~~~~~~--~l~s~~~d~~v~iwd~~ 147 (579)
+.++++|...|.|.+|.-.... +..++ +++|. ..|..+.|..++. .++..+.|.+|++|-+.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 7788888888999999866433 22211 24443 2478888876553 47777899999999875
Q ss_pred CCce------------------------------------------eeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEE
Q 008041 148 TGSL------------------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKT 183 (579)
Q Consensus 148 ~~~~------------------------------------------~~~~-~~~~~~v~~l~~~p~g~~l~~~~-~~i~v 183 (579)
.... .+.+ ..|.-.+.++.++.|...+++++ =.|.+
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL 197 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL 197 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence 3210 0001 24556788999999999999999 79999
Q ss_pred EECCCCee---eEEeecCC-----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc-ceeeeee--e-------
Q 008041 184 FNCSDHKK---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAM--E------- 244 (579)
Q Consensus 184 wd~~~~~~---~~~~~~h~-----~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~-~~~~~~~--~------- 244 (579)
|++.-... +..++.|. .-|++..|+|... .+..++ ..|.|++-|++....-. ....+.. .
T Consensus 198 Wnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff 276 (460)
T COG5170 198 WNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF 276 (460)
T ss_pred ccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhH
Confidence 99874322 33344454 3578889999654 334444 58999999998542110 0001111 0
Q ss_pred -cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 245 -HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.....++-..|+ ++|+++++-+. -++++||....
T Consensus 277 ~eivsSISD~kFs-----~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 277 EEIVSSISDFKFS-----DNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HHHhhhhcceEEc-----CCCcEEEEecc-ceEEEEecccc
Confidence 111234445555 99999987665 58999997644
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.0024 Score=65.90 Aligned_cols=177 Identities=11% Similarity=0.099 Sum_probs=114.3
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008041 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (579)
..+.+.+.|..+.+..+++.-+ +....+.++|+|+++++++.+ .++...+..+...+..|... .+ .++.+
T Consensus 213 y~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vk 286 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVK 286 (635)
T ss_pred eeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhh
Confidence 3355888899988887776532 345677899999998887632 23333333222222222111 01 13456
Q ss_pred CCCEEEEECCeEEEEECCC-----CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc------cce
Q 008041 170 DGKMLATAAGQLKTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SAS 238 (579)
Q Consensus 170 ~g~~l~~~~~~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~------~~~ 238 (579)
+|++...+++.|.+.|.++ .+.+..+. -......+.++|||+++++++..+.++.|.|+.+.+.. ...
T Consensus 287 dGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 287 AGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 8888777678999999998 34555554 34556889999999999999878999999999886521 011
Q ss_pred ee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 239 CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
++ ....-.... ....|+ ++|....+.-.|..|..||+..
T Consensus 366 ~vvaevevGlGP-LHTaFD-----g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPELGLGP-LHTAFD-----GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeeccCCCc-ceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence 11 111111112 234455 7888777778899999999876
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.00014 Score=75.07 Aligned_cols=290 Identities=12% Similarity=0.106 Sum_probs=158.0
Q ss_pred EEccCCCEEEEEeC----CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 12 SFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fspdg~~lasg~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+|+|...+||.++. .|.|.||- ++|++..... .....++++|.|. .-
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~~ 72 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------EF 72 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------HH
Confidence 89999999998873 57788873 4565433221 0123456888886 45
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecCC--C--C
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST--K--G 161 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~--~--~ 161 (579)
.++.|-.-|.+.+|...+.+.- .....|..+|..+.|+|+|..++++..-|.|.+|.......++. +-.|. . .
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt 151 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT 151 (1416)
T ss_pred HHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence 5788888899999998877764 44467999999999999999999999999999998653222222 11121 1 3
Q ss_pred eeEEEEccCCC-------EEEEEC-CeEE-EEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 162 ISCMAVSSDGK-------MLATAA-GQLK-TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 162 v~~l~~~p~g~-------~l~~~~-~~i~-vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
..|...++++. .-++|+ +-+- .++.+....-+... |. -.|+|..++.++ .+|+|+--|-...
T Consensus 152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~-~~GtVyyvdq~g~ 222 (1416)
T KOG3617|consen 152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAG-KSGTVYYVDQNGR 222 (1416)
T ss_pred EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEc-CCceEEEEcCCCc
Confidence 34555566643 222333 2221 22222110011111 11 136777777777 7998887764433
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc-CCceeecccCCeeEEeeeccCCcccccccc
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG-QNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
.. .+...+. .+.+++. +...-+.+...+-++.+|-. .+|..-. .. ...+ +...-+..
T Consensus 223 ~~----~V~k~dS---~vQmLf~------~~~eai~~i~e~lr~~l~~v~~~G~~ee-~~--~vk~------sgk~Ggrq 280 (1416)
T KOG3617|consen 223 QR----TVHKLDS---EVQMLFM------GYCEAISIIIEFLRDCLIFVLAKGTSEE-RC--AVKV------SGKLGGRQ 280 (1416)
T ss_pred EE----EEEEccc---hHHHHHh------cccceEEEEeeeceeeEEEecCCCchHH-hh--hhhh------ccccCCcc
Confidence 21 1112111 1223332 33344555555555544432 2221100 00 0000 11110111
Q ss_pred hhhhhccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceecccceee
Q 008041 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
..|+.+-..|+.+. -+++.. ...-+.|++++..+..| ..|...+.+.+|.-
T Consensus 281 GgiA~sEssGvLr~----------------~eKyg~e~ge~~~c~cY~~~~~~l-~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 281 GGIACSESSGVLRK----------------SEKYGLELGEGILCMCYGEKEIRL-WAGTKEGNVTIWLD 332 (1416)
T ss_pred CccccccccccccC----------------CcchhhhcCCceEEEEEeccceEE-EecccCCcEEEeee
Confidence 13444443332222 011111 23357888899888888 78877888888864
No 328
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.0031 Score=66.07 Aligned_cols=151 Identities=20% Similarity=0.267 Sum_probs=92.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC---
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--- 94 (579)
..++.++.|+.|.-.|..+|+.+..+............+.+ +. .+..+++++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v------------~~g~Vivg~~~~~ 176 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LV------------VKGKVITGISGGE 176 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EE------------ECCEEEEeecccc
Confidence 45667778999999999999998876531110000000001 00 0345666653
Q ss_pred ---CCeEEEEEccCCeEEEEecCCCC------------------------------CCEE-EEEEccCCCEEEEEeCC--
Q 008041 95 ---GGDVLALAVSAGQLKWRLSDCHP------------------------------GGVS-AISFATHGSCIYSAGAD-- 138 (579)
Q Consensus 95 ---~g~i~iwd~~~~~~~~~~~~~h~------------------------------~~V~-~l~~~~~~~~l~s~~~d-- 138 (579)
+|.|..+|..+|+.+++...... ..++ .+.+.|+..+++.+..+
T Consensus 177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~ 256 (527)
T TIGR03075 177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS 256 (527)
T ss_pred cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence 57899999999999877532111 1122 34666666666665422
Q ss_pred ---C-----------cEEEEeCCCCceeeEeecCCC---------CeeEEEEccCCC---EEEEEC--CeEEEEECCCCe
Q 008041 139 ---G-----------MVCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTFNCSDHK 190 (579)
Q Consensus 139 ---~-----------~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~p~g~---~l~~~~--~~i~vwd~~~~~ 190 (579)
+ .|.-.|+++|+....|+.... ...-+.+..+|+ .++.+. |.+++.|-++|+
T Consensus 257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 2 577789999998888775222 122233334676 566666 899999999998
Q ss_pred ee
Q 008041 191 KM 192 (579)
Q Consensus 191 ~~ 192 (579)
.+
T Consensus 337 ~i 338 (527)
T TIGR03075 337 LL 338 (527)
T ss_pred ee
Confidence 76
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.3e-05 Score=72.16 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=136.3
Q ss_pred eEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
++++.|-+|..++|++. |..++++|+.+-....-++- ......+.|.....+. -.
T Consensus 57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL-------------------~~lPg~a~wv~skGd~-----~s 112 (558)
T KOG0882|consen 57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL-------------------VDLPGFAEWVTSKGDK-----IS 112 (558)
T ss_pred HhhhccccceeEeeccCcccceeEEEeeccchhhhccc-------------------ccCCCceEEecCCCCe-----ee
Confidence 44477889999999877 99999999987665433321 1112234555443221 22
Q ss_pred EEEEEE-CCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeE-----
Q 008041 88 LLVLGT-GGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGK----- 154 (579)
Q Consensus 88 ~l~~~~-~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~------~~~~~~----- 154 (579)
.++++. .+|.|.++|-....+ ..-+.+-|..+|..+.+++-+..+.+....|.|..|.... .+....
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT 192 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET 192 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence 344444 568899999876653 3334466999999999999999999999999999999762 111111
Q ss_pred ----eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------------------------------
Q 008041 155 ----FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-------------------------------- 196 (579)
Q Consensus 155 ----~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-------------------------------- 196 (579)
+.-.+....++.|+|+|..+.+-+ ..|++++.++|+.++.+.
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele 272 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE 272 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence 112345678999999999998877 799999999987654331
Q ss_pred cCCC-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 197 GHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 197 ~h~~-~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.|.. .-+.+.|...|++|+.++- = -|++.++.++.
T Consensus 273 k~~~~~~~~~~fdes~~flly~t~-~-gikvin~~tn~ 308 (558)
T KOG0882|consen 273 KHGSTVGTNAVFDESGNFLLYGTI-L-GIKVINLDTNT 308 (558)
T ss_pred hhcCcccceeEEcCCCCEEEeecc-e-eEEEEEeecCe
Confidence 1211 2345678888999988762 3 48888888765
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=9.8e-07 Score=87.90 Aligned_cols=198 Identities=11% Similarity=0.131 Sum_probs=127.7
Q ss_pred ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 8 ~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
++...+..|...++.|..+|.|.+-..+...-. .++. .++ ...+++++|.+.+ .
T Consensus 61 cva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t----------------p~~-ar~Ct~lAwneLD--------t 115 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT----------------PGY-ARPCTSLAWNELD--------T 115 (783)
T ss_pred eehhhcCCchhhhhhccccCceEEeecCCcccccceec----------------ccc-ccccccccccccc--------H
Confidence 343334445458889999999988776543221 1111 122 4578999999875 4
Q ss_pred cEEEEEEC----CCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeec
Q 008041 87 SLLVLGTG----GGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRA 157 (579)
Q Consensus 87 ~~l~~~~~----~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~ 157 (579)
+.|++|-. +..+.|||+.++- ....+..+......+++|..+.+.+.+|.....+.++|++.. .....+
T Consensus 116 n~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 116 NHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--
Confidence 55666643 3449999998761 112222223455678899988889999999999999998732 222222
Q ss_pred CCCCeeEEEEcc-CCCEEEEEC-CeEEEEE-CCCCe-eeEEeecCCC----CEEEEEEecCCC-EEEEEecCCCeEEEEE
Q 008041 158 STKGISCMAVSS-DGKMLATAA-GQLKTFN-CSDHK-KMQKFSGHPG----AVRFMTFSDNGK-YVLSSAVGERYIALWR 228 (579)
Q Consensus 158 ~~~~v~~l~~~p-~g~~l~~~~-~~i~vwd-~~~~~-~~~~~~~h~~----~v~~l~~s~~~~-~l~s~~~~d~~i~vwd 228 (579)
....+..+.++| .+.++++-. |.|.+|| .++-+ .+..+...+. .+..++|+|... .+++...+.++|+.++
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred hhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 234566788888 788888877 9999999 33322 2222322222 488999998654 4455555668999999
Q ss_pred cCCC
Q 008041 229 TDGV 232 (579)
Q Consensus 229 ~~~~ 232 (579)
+...
T Consensus 274 i~~v 277 (783)
T KOG1008|consen 274 ICVV 277 (783)
T ss_pred cccc
Confidence 8653
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.01 E-value=0.0088 Score=58.27 Aligned_cols=224 Identities=11% Similarity=0.019 Sum_probs=113.3
Q ss_pred ECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe--EEEEEccCCeEEE
Q 008041 33 DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKW 110 (579)
Q Consensus 33 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~~~~~~~ 110 (579)
|..||..+..++.........-|..+ +|... +..+|+.+..+|. +++.|+.+++..+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~-------------~ft~d--------G~kllF~s~~dg~~nly~lDL~t~~i~Q 74 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQN-------------CFTDD--------GRKLLFASDFDGNRNLYLLDLATGEITQ 74 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS---------------B-TT--------S-EEEEEE-TTSS-EEEEEETTT-EEEE
T ss_pred CCCCCceEEEecCCCCcccceeecCC-------------CcCCC--------CCEEEEEeccCCCcceEEEEcccCEEEE
Confidence 67788888777654433332333222 22221 1355665665665 8888999998874
Q ss_pred EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE--ccCCCEEEEEC----------
Q 008041 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA---------- 178 (579)
Q Consensus 111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~p~g~~l~~~~---------- 178 (579)
-. .+-.....+..++|+++.++-......|+-.|+.+.+....+......+-...| +.|+..++..-
T Consensus 75 LT-dg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 75 LT-DGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp ----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred Cc-cCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence 44 322222335667888888776666778999999998876666666665554555 44666665431
Q ss_pred --------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---CCC-eEEEEEcCCCccccceee
Q 008041 179 --------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---GER-YIALWRTDGVKKQSASCV 240 (579)
Q Consensus 179 --------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---~d~-~i~vwd~~~~~~~~~~~~ 240 (579)
..|.-.|+.+|+....+. -...+..+.|+|....++.-|. +|. .-+||-++...... ..+
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v 231 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKV 231 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eee
Confidence 246667888887544444 4567888999997776666542 222 13677666543221 122
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEc-----CCeEEEEEcCCcee
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE 286 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~ 286 (579)
... .......--+|. |||..|.--+. +..|.-+|..+++.
T Consensus 232 ~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 232 HRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp S----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred ecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 222 335555666776 89987765443 33566678887754
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.00 E-value=0.00052 Score=73.29 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=95.4
Q ss_pred CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008041 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (579)
Q Consensus 25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~ 104 (579)
....|.-.|+..|+.+.++..+.... ...|.+.-.-+++ .+...++|-.+..+..||++
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aql--------------------t~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQL--------------------TNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcc-eeEeccccccccc--------------------CCCceEEEECCCceEEeccC
Confidence 45678888999999999998655321 1122221000000 14457899999999999998
Q ss_pred CCe--EEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCCEEEEEC-
Q 008041 105 AGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA- 178 (579)
Q Consensus 105 ~~~--~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~~l~~~~- 178 (579)
-.. ++..-. .......+|++-..+| +|+.|+.+|.||+|| +.|+.-+ .+.+-..+|..|+.+.||+++++.+
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 632 332111 1133457788877776 799999999999999 4454333 4667778999999999999988877
Q ss_pred CeEEEEEC
Q 008041 179 GQLKTFNC 186 (579)
Q Consensus 179 ~~i~vwd~ 186 (579)
..+.+++.
T Consensus 639 tyLlLi~t 646 (794)
T PF08553_consen 639 TYLLLIDT 646 (794)
T ss_pred ceEEEEEE
Confidence 77788775
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.99 E-value=0.0047 Score=64.46 Aligned_cols=193 Identities=12% Similarity=0.181 Sum_probs=115.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccc--cccccccccccccccccceEEeeecccccccccCC-cEEEEEE
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTET--TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGT 93 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~~~ 93 (579)
+..+..++.++.|.-.|..+|+.+..+........ ....... ... .+ ..+++++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g-----------~~~------------~~~~~V~v~~ 117 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG-----------VAY------------WDPRKVFFGT 117 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCC-----------cEE------------ccCCeEEEec
Confidence 34566677789999999999998877653221000 0000000 000 03 6788999
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCC----CEE-EEEEccCCCEEEEEe---------CCCcEEEEeCCCCceeeEeecCC
Q 008041 94 GGGDVLALAVSAGQLKWRLSDCHPG----GVS-AISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~----~V~-~l~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
.+|.|+-+|..+|+.+++....-.. .+. +..+. +..++.++ .++.++.+|..+|+.+..+....
T Consensus 118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~ 195 (488)
T cd00216 118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTE 195 (488)
T ss_pred CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccC
Confidence 9999999999999999887432110 011 11221 23455553 36889999999999888765421
Q ss_pred CC--------------------e-eEEEEccCCCEEEEEC--C------------------eEEEEECCCCeeeEEeec-
Q 008041 160 KG--------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSG- 197 (579)
Q Consensus 160 ~~--------------------v-~~l~~~p~g~~l~~~~--~------------------~i~vwd~~~~~~~~~~~~- 197 (579)
.. + .+.++++.+..++.+. + .|.-+|..+|+.+-+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~ 275 (488)
T cd00216 196 PDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT 275 (488)
T ss_pred CCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC
Confidence 10 0 1344555555666654 3 699999999998877642
Q ss_pred -CCC----CEEEEEEe----cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041 198 -HPG----AVRFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 198 -h~~----~v~~l~~s----~~~~---~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|.. ......+. -++. .++.++ .+|.+...|..+++..
T Consensus 276 ~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~ 324 (488)
T cd00216 276 PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI 324 (488)
T ss_pred CCCCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence 211 00111111 1333 455554 7999999999998754
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.98 E-value=0.0082 Score=57.36 Aligned_cols=194 Identities=13% Similarity=0.183 Sum_probs=123.2
Q ss_pred EEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|.||+++..... ...|.|-|+..++.+.++..+. |..-.|.. +.-
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------------------C~~iyP~~--------~~~ 149 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------------------CWLIYPSG--------NRG 149 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------------------EEEEEEEE--------TTE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------------------EEEEEecC--------CCc
Confidence 388999998887653 5679999999999988775221 22223332 345
Q ss_pred EEEEECCCeEEEEEcc-CCeEEEE---ecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEeec----
Q 008041 89 LVLGTGGGDVLALAVS-AGQLKWR---LSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFRA---- 157 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~-~~~~~~~---~~~~h~~~V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~---- 157 (579)
+.+-+.||.+.-..+. .|+...+ ++..-.+++. .-.+...+..++..+.+|.|+--|+...... ..+..
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc
Confidence 7888999998888887 4544321 2222223332 3344555556666789999999988654321 11211
Q ss_pred ------CCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEe
Q 008041 158 ------STKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSA 218 (579)
Q Consensus 158 ------~~~~v~~l~~~p~g~~l~~~~------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~ 218 (579)
-.+.-.-+++++..+.|.+-. ..|.+||+.+++.+..+.- ..++.+|..+.+.+ +|++.+
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~ 308 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS 308 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc
Confidence 012345578887665555431 2799999999999998873 34688999998876 555554
Q ss_pred cCCCeEEEEEcCCCccc
Q 008041 219 VGERYIALWRTDGVKKQ 235 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~ 235 (579)
..++.+.+||..+++..
T Consensus 309 ~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 309 AGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTTEEEEEETTT--EE
T ss_pred CCCCeEEEEeCcCCcEE
Confidence 46899999999998754
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=0.00013 Score=72.98 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=61.3
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC
Q 008041 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH 189 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~ 189 (579)
...+.|.+++++|+...++.|+.||+|.+||...+... +....-.++.++|+|+|.++++|+ |.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46778999999999999999999999999998666332 223345678999999999999999 99999998654
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.015 Score=58.58 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=128.8
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
..+....++.|.+.|..+.........+. ....++++|+++.++.+.. ++++.+.|-.+++...+......+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 44444556889999988877765554443 5778999999988877765 689999999888888875543334 89
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeE-E----eecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCcc
Q 008041 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-K----FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~-~----~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~ 234 (579)
++++|+|+.++.+. +.|.+.|..+..... . ...+ ..-..+.++|+|.++......+ +.+...|..++..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 99999999777665 899999977665543 1 2212 2235689999999776665333 5788888877653
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeecc
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN 289 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 289 (579)
.. ..... ... ........ |+|.++.+... .+.+.+-|..+......
T Consensus 244 ~~--~~~~~-~~~-~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 244 TA--TDLPV-GSG-APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EE--ecccc-ccC-CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 21 00111 111 22334444 99999888854 58899988877665543
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.90 E-value=0.025 Score=54.14 Aligned_cols=245 Identities=15% Similarity=0.167 Sum_probs=127.8
Q ss_pred EEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCcc-ccccccccccccccccccccceEEeeeccccc
Q 008041 12 SFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 12 ~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
..||||+.+++++ ..-.|.+||..+-....++.-+.. ......+.. .... +.
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~------------~~~l-s~---- 104 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKN------------MFAL-SA---- 104 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GG------------GEEE--T----
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccccc------------ceEE-cc----
Confidence 6899999888654 234699999999988887653321 000000000 0000 00
Q ss_pred ccccCCcEEEEEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeE---
Q 008041 81 KRKLGSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGK--- 154 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~--- 154 (579)
++.++++.... ..|.|-|+..++.+..+.. ..+..+--+++ +.|.+-|.||.+.-..+. .|+..++
T Consensus 105 ----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 105 ----DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp ----TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred ----CCcEEEEEccCCCCeEEEEECCCCceeeeecC---CCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence 14444444333 3477777777777665522 23333332332 458888899999998887 5665433
Q ss_pred -eecCCCC-eeEEEEccCC-CEEEEEC-CeEEEEECCCCee--eEEeec----------CCCCEEEEEEecCCCEEEEEe
Q 008041 155 -FRASTKG-ISCMAVSSDG-KMLATAA-GQLKTFNCSDHKK--MQKFSG----------HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 155 -~~~~~~~-v~~l~~~p~g-~~l~~~~-~~i~vwd~~~~~~--~~~~~~----------h~~~v~~l~~s~~~~~l~s~~ 218 (579)
|.....+ +..-++...+ .++.... |.|+--|+..... ...+.- ..+.-.-+++++....|++.-
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 2222222 2233444444 4444444 8999888876542 222210 123345578887665555421
Q ss_pred -------cCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeec
Q 008041 219 -------VGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR 288 (579)
Q Consensus 219 -------~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 288 (579)
..|. .|.++|+.+++.. ..+..... +..+..+. .+..+|++.+ .++.+.+||..+|+.++
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv-----~Ri~l~~~-~~Si~Vsq----d~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRV-----ARIPLEHP-IDSIAVSQ----DDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEE-----EEEEEEEE-ESEEEEES----SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEE-----EEEeCCCc-cceEEEcc----CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 1122 4777787777643 33322221 22334441 2334665554 58999999999999887
Q ss_pred ccC
Q 008041 289 NTK 291 (579)
Q Consensus 289 ~~~ 291 (579)
..+
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 654
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.89 E-value=0.036 Score=56.82 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=125.3
Q ss_pred EEEEccCCCEEEEE-eCCC----cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 10 LTSFSPALDYFAIC-SGDA----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fspdg~~lasg-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
..++||||+++|.+ +..| .|+|+|+.+|+.+...- .......+.|.+.+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~------- 181 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDG------- 181 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTS-------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCC-------
Confidence 35899999999865 3333 59999999997654210 01122236776643
Q ss_pred CCcEEEEEECC----------CeEEEEEccCCeEE-EEecCCCCC-C-EEEEEEccCCCEEEEEe-CC---CcEEEEeCC
Q 008041 85 GSSLLVLGTGG----------GDVLALAVSAGQLK-WRLSDCHPG-G-VSAISFATHGSCIYSAG-AD---GMVCEIDPL 147 (579)
Q Consensus 85 ~~~~l~~~~~~----------g~i~iwd~~~~~~~-~~~~~~h~~-~-V~~l~~~~~~~~l~s~~-~d---~~v~iwd~~ 147 (579)
..++++.... ..|+.|.+.++... ..++.+... . ...+..++|+++++..+ .. ..+++.|+.
T Consensus 182 -~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 182 -KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp -SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred -CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 2333443333 22888888766432 112222222 2 67888999999966543 22 347888887
Q ss_pred CC----ceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEE
Q 008041 148 TG----SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 148 ~~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
.+ .....+......+....-+..+.+++... +.|...++.+... ...+..|...+.--.+...+.+|+
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 64 23333333344443333333555555543 5777788887652 335555665443344444556666
Q ss_pred EEecCCC--eEEEEEcC-CCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEE-Ec--CCeEEEEEcCCceee
Q 008041 216 SSAVGER--YIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAI-SE--TGVCYIWYGQNIEEL 287 (579)
Q Consensus 216 s~~~~d~--~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~--dg~i~iwd~~~~~~~ 287 (579)
..-..++ .|.++++. ..... ...+.... .+...... +++. +.+.. |. -++++.||+.+++..
T Consensus 341 l~~~~~~~~~l~v~~~~~~~~~~----~~~~p~~g-~v~~~~~~-----~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLDDGKESR----EIPLPEAG-SVSGVSGD-----FDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETTEEEEEEEETT-TEEEE----EEESSSSS-EEEEEES------TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEECCccEEEEEECCCCcEEe----eecCCcce-EEeccCCC-----CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 6554454 58888988 33211 11222222 12222222 3333 33333 22 468888998888653
No 339
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.014 Score=55.93 Aligned_cols=232 Identities=11% Similarity=0.091 Sum_probs=124.4
Q ss_pred ccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 14 SPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 14 spdg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
...++.|+.|..+| |.+++... ........ .. .++.+.-.+. -+ +++.
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~-~~-------------------~I~ql~vl~~---------~~-~llv 52 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK-LS-------------------SITQLSVLPE---------LN-LLLV 52 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee-cc-------------------eEEEEEEecc---------cC-EEEE
Confidence 34678999999898 89998832 22222211 00 1222222221 12 2333
Q ss_pred ECCCeEEEEEccCCeEEEEe-------------cCCCCCCEEEEE--EccCCCEEEEEeCCCcEEEEeCCCC-----cee
Q 008041 93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL 152 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~-------------~~~h~~~V~~l~--~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~ 152 (579)
-.|+.++++++..-...... .......+..++ -.+.+...+.+....+|.+|..... +..
T Consensus 53 Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 53 LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 34599999998764432210 112233455555 1234444444555668888876543 344
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEec
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~s~~~~~l~s~~~ 219 (579)
+.+.- ...+.+++|. ++.++.|. +...+.|+.++.....+... ..++..+.. +++.+|++
T Consensus 133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--- 205 (275)
T PF00780_consen 133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--- 205 (275)
T ss_pred EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE---
Confidence 55553 4678899998 55677775 88999999977554332111 123333333 44566654
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (579)
.|..-...|....... . ..+.-........... .+|++.+. +.|.||++.+++.++.+......
T Consensus 206 ~~~~g~fv~~~G~~~r--~--~~i~W~~~p~~~~~~~--------pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 206 YDNIGVFVNKNGEPSR--K--STIQWSSAPQSVAYSS--------PYLIAFSS-NSIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred ecceEEEEcCCCCcCc--c--cEEEcCCchhEEEEEC--------CEEEEECC-CEEEEEECcCCcEEEEEECCCEE
Confidence 2444444444332211 1 1222333333333332 46666655 55999999999887766544443
No 340
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0001 Score=74.94 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=99.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
-+++..++|++.|+.-|.+.+|+-..|.....-.+ + ....++..-.+.+ ..+++
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~----------------~--~~~~~~~~~vs~~--------e~lvA 92 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE----------------G--ATGITCVRSVSSV--------EYLVA 92 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhccccc----------------C--ccceEEEEEecch--------hHhhh
Confidence 37788899999999999999999776654321110 0 1111222222221 56788
Q ss_pred EEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceeeEeecCCCC
Q 008041 91 LGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRASTKG 161 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~ 161 (579)
.|+..|.|.++-++.+.. +....+.|...|++++|++|+..+++|...|+|..-.+... ...+.+....+.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 999999999998876432 22223447889999999999999999999999998887662 122233334567
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCC
Q 008041 162 ISCMAVSSDGKMLATAAGQLKTFNCSDH 189 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~ 189 (579)
|-.+... ++.+|++..-...+++++.+
T Consensus 173 IVQlD~~-q~~LLVStl~r~~Lc~tE~e 199 (726)
T KOG3621|consen 173 IVQLDYL-QSYLLVSTLTRCILCQTEAE 199 (726)
T ss_pred eEEeecc-cceehHhhhhhhheeecchh
Confidence 7667665 34444444455556666544
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0011 Score=66.98 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=87.5
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~ 172 (579)
..++++++.+++...... ..+.-....|+|||+.++.+ ..||. |+++|+..+.. ..+....+.-..-.|+|||+
T Consensus 218 ~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCC
Confidence 469999999887643332 23344566899999986554 45664 66678776663 33554444444778999999
Q ss_pred EEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCc
Q 008041 173 MLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVK 233 (579)
Q Consensus 173 ~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~ 233 (579)
.++..+ | .|++++.+.+.. ..+....+.-..-.|+|||++++..+..+|. |.+.++.++.
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 999877 3 688888876654 3333233333377899999999888744454 5555554443
No 342
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0021 Score=67.06 Aligned_cols=193 Identities=16% Similarity=0.218 Sum_probs=121.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC------cee-
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLTG------SLL- 152 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~------~~~- 152 (579)
+..++.|+.+|.|.+++-.-.. +..+ +.+... |..+....+..++++.+.|+ .+++||+..- .++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~~-~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQL-IRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CceEEEeeccccEEEeccccee-eehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 6789999999999988754222 1222 445555 45444444446778777665 4899998632 233
Q ss_pred --eEee--c--CCCCeeEEEEccCCCEEEEEC--CeEEEEECC--C--CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041 153 --GKFR--A--STKGISCMAVSSDGKMLATAA--GQLKTFNCS--D--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 153 --~~~~--~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~--~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
+.+. . ...++.+++++.+-+.+|+|- |.|..+.-+ . +....-......+|+.+.+..+++.++... .
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence 1122 1 245789999999988888887 888887432 1 111112223457999999998888622222 2
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
-..|.+|.+.... + ....+.+++..+.|..++ +....+++++ +..+.+|+.+.......+.
T Consensus 192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 4679999998543 2 334567888888888887 3333244443 3479999887655544443
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0013 Score=66.31 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=100.5
Q ss_pred CCCCEEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---C--eEEEEEC
Q 008041 116 HPGGVSAISFATHGSCIYSAG---AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---G--QLKTFNC 186 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~---~d-~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~--~i~vwd~ 186 (579)
-...+..-+|+|+++.++..+ .. ..++++|+.+++...... ..+.-...+|+|||+.++.+. | .|+++|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 345677788999998754432 22 469999999886555433 223334578999999998876 3 7899999
Q ss_pred CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC
Q 008041 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 187 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
.++.. ..+..-.+.-..-.|+|||++++..++..|. |.+++.+..... ..+....... .-.++ |||
T Consensus 270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~----riT~~~~~~~--~p~~S-----pdG 337 (425)
T COG0823 270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT----RLTFSGGGNS--NPVWS-----PDG 337 (425)
T ss_pred CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee----EeeccCCCCc--CccCC-----CCC
Confidence 88763 3354334444467899999999998866665 444555554422 1122122211 34444 999
Q ss_pred cEEEEEEc-CCe--EEEEEcCCce
Q 008041 265 LYVLAISE-TGV--CYIWYGQNIE 285 (579)
Q Consensus 265 ~~l~~~~~-dg~--i~iwd~~~~~ 285 (579)
++|+..+. +|. |.++|..++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 99988875 354 5556655544
No 344
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.003 Score=60.74 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=116.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~ 160 (579)
+.++.+--..+.|.-|+..+++...-. +.+.+.++..-..+..|+++. . -+.+++..++..+..+... ..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcC
Confidence 445666667788999999877653222 334445554444454555552 3 3677777666553332221 13
Q ss_pred CeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
..+.+.+.|+|.+.++.. |.++.+|. .+..++.+..+-..-+.|+||||++.|+.+-+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 567888999998776532 34555554 4556666666666678899999999888775556788888
Q ss_pred EcCC--CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-eEEEEEcCCceeecccCC
Q 008041 228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~ 292 (579)
++.. +.....................+.. .+|.+-+++-.+| .|..|+.+ ++.+..+.-
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 8763 1111111111222223333444444 6777665544444 89999988 777765543
No 345
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.86 E-value=0.0026 Score=68.99 Aligned_cols=188 Identities=13% Similarity=0.217 Sum_probs=120.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC----CC-------------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----LT------------- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~----~~------------- 148 (579)
...+++++..|.|.+-|+.+.... +...-..+|.+++|+||++.++..+.++++.+.+- -.
T Consensus 80 ~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 80 TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence 667999999999999999887653 22334578999999999999988888888776432 11
Q ss_pred ------CceeeEeecCC---------------------CCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE
Q 008041 149 ------GSLLGKFRAST---------------------KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 149 ------~~~~~~~~~~~---------------------~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~ 194 (579)
|+....|++.. +.=++|.|--||+++++.. ..|++||-+ |..-.+
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~ 236 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST 236 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence 11111222111 1124589999999999853 589999976 543222
Q ss_pred eecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE--
Q 008041 195 FSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-- 270 (579)
Q Consensus 195 ~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 270 (579)
-....+.-.+++|-|.|..+++... .|+.|.++.-..-.... .....+.....+.-+.|+ .++..|++.
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wn-----s~sdiLAv~~~ 309 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWN-----SNSDILAVVTS 309 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccchheeeec-----CCCCceeeeec
Confidence 2223344567999999998877532 34568888765543221 222222333325666776 788888773
Q ss_pred -EcCCeEEEEEcCC
Q 008041 271 -SETGVCYIWYGQN 283 (579)
Q Consensus 271 -~~dg~i~iwd~~~ 283 (579)
.....|++|-..+
T Consensus 310 ~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGN 323 (1265)
T ss_pred ccccceEEEEEecC
Confidence 3344599997554
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.86 E-value=0.01 Score=58.36 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=87.2
Q ss_pred CcEEEEEEC---------C-CeEEEEEccCC-----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 008041 86 SSLLVLGTG---------G-GDVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~---------~-g~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~ 150 (579)
..++++|+. . |.|.++++... ++.........++|++++-- +| +++.+ ..+.|++|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcc
Confidence 577888885 2 88999999984 33222223467899999866 44 44444 45889999998777
Q ss_pred -eeeEe-ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041 151 -LLGKF-RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 151 -~~~~~-~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~ 223 (579)
....- ......+.++... ++++++|+ ..+.++..+. ++.+..+. .....++++.|-++++.++.+ +.+|.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~-D~~gn 195 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG-DKDGN 195 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-ETTSE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-cCCCe
Confidence 44332 2122355555554 66888888 6666664332 33333332 234568888898777766655 47999
Q ss_pred EEEEEcCC
Q 008041 224 IALWRTDG 231 (579)
Q Consensus 224 i~vwd~~~ 231 (579)
+.++....
T Consensus 196 l~~l~~~~ 203 (321)
T PF03178_consen 196 LFVLRYNP 203 (321)
T ss_dssp EEEEEE-S
T ss_pred EEEEEECC
Confidence 99998764
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.82 E-value=0.00039 Score=69.76 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=63.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
++| +|++++|+.+.|+.|+.||.|.+||...+..... + .....+.++|+|.
T Consensus 260 s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~------- 310 (545)
T PF11768_consen 260 SQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD------- 310 (545)
T ss_pred Ccc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC-------
Confidence 566 8889999999999999999999999877643321 1 1234567888875
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC 115 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~ 115 (579)
+.++++|+..|.+.+||+.-+....++..+
T Consensus 311 --gai~~V~s~qGelQ~FD~ALspi~~qLlsE 340 (545)
T PF11768_consen 311 --GAIFVVGSEQGELQCFDMALSPIKMQLLSE 340 (545)
T ss_pred --CcEEEEEcCCceEEEEEeecCccceeeccc
Confidence 788999999999999999877665555433
No 348
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00011 Score=69.73 Aligned_cols=151 Identities=12% Similarity=0.153 Sum_probs=99.7
Q ss_pred EEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
+++.+..+-+.. ++..+|...|.+++|+|..+ .+..++.+..|++.|+++...+..+..+ ..+.+++|.-|...++-
T Consensus 175 v~~l~~~~fkss-q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSS-QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchh-hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 555555544443 35577888999999999777 5788999999999999999999998877 78999999987766655
Q ss_pred EC---CeEEEEECCCCee-eEEeec--CCCCEEEEEEe------cCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 177 AA---GQLKTFNCSDHKK-MQKFSG--HPGAVRFMTFS------DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 177 ~~---~~i~vwd~~~~~~-~~~~~~--h~~~v~~l~~s------~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
++ |.|++||++..+- +..+.+ ...+|..++.- +.|.+++.+. . .+..|........ ..++..++
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t--~l~f~ei~~s~~~-~p~vlele 328 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-T--VLQFYEIVFSAEC-LPCVLELE 328 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-h--hhhhhhhhccccC-CCcccccC
Confidence 55 8999999987542 233322 23445444332 3344444332 2 3566776544322 23455555
Q ss_pred cCceeEEeEE
Q 008041 245 HPAVFMDCRC 254 (579)
Q Consensus 245 ~~~~~~~~~~ 254 (579)
.++..+++..
T Consensus 329 ~pG~cismqy 338 (463)
T KOG1645|consen 329 PPGICISMQY 338 (463)
T ss_pred CCcceeeeee
Confidence 5555555443
No 349
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.009 Score=58.21 Aligned_cols=193 Identities=11% Similarity=0.113 Sum_probs=90.1
Q ss_pred EEccCCCEEEEEeC-CC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 12 ~fspdg~~lasg~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+|.+||+.|+.++. || .+.+.|+.+++..+--.+..........+++ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~ 94 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA 94 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence 68899987776664 54 5666799998876644332211111122221 344
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEe----------------------CCCcEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAG----------------------ADGMVCEI 144 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~----------------------~d~~v~iw 144 (579)
++..-.+..+.-.|+.+.+... +......-+-...| +.|+..++-.- ..+.|.-.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~-vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERV-VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEE-EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEE-EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 5555556678888888876532 22223333433444 33555443221 12346667
Q ss_pred eCCCCceeeEeecCCCCeeEEEEccCCC-EEEEEC-C---e--EEEEECCC-CeeeEEeecCC--CCEEEEEEecCCCEE
Q 008041 145 DPLTGSLLGKFRASTKGISCMAVSSDGK-MLATAA-G---Q--LKTFNCSD-HKKMQKFSGHP--GAVRFMTFSDNGKYV 214 (579)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~-~---~--i~vwd~~~-~~~~~~~~~h~--~~v~~l~~s~~~~~l 214 (579)
|+.+|+....+. ....+..+.|+|... .|+.|. | . -++|-+++ +...+.+..|. ..+..=-|.|||..+
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 888887655555 456788999999554 444444 2 2 25665543 33344443333 223445789999876
Q ss_pred EEEec----CCCeEEEEEcCCCc
Q 008041 215 LSSAV----GERYIALWRTDGVK 233 (579)
Q Consensus 215 ~s~~~----~d~~i~vwd~~~~~ 233 (579)
..-+. .+..|.-+|+.+++
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--
T ss_pred EEEeecCCCCceEEEeeCCCCCC
Confidence 55332 24467777777765
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.77 E-value=0.0022 Score=68.61 Aligned_cols=141 Identities=17% Similarity=0.308 Sum_probs=97.6
Q ss_pred CcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCc--eeeE-e-
Q 008041 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-F- 155 (579)
Q Consensus 86 ~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~d~~v~iwd~~~~~--~~~~-~- 155 (579)
..+|+.-- ....++-.|+.+|+.+.........+|..++-.. +....+.|-.+..+..||.+-.. ++.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 45555543 4466999999999998777543444466654321 13345677788999999988532 3321 1
Q ss_pred -ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 156 -RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 156 -~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
......++|++-+.+|.+.+... |.|++||- .|+. ...+++-..||.+|..+.||+++++++ +..+.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 12344788999888885544444 99999994 4433 334567789999999999999999886 678888886
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.0095 Score=59.65 Aligned_cols=216 Identities=15% Similarity=0.207 Sum_probs=113.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--Eecc----------C---ccccccccc--ccccccccc-------
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFAD----------I---ASTETTSLY--GNRLEREHL------- 64 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~----------~---~~~~~~~~~--~~~~~~~~~------- 64 (579)
..+.|+++..-||.|...|.|.||.+...+... .... + ...+..+.- .+.+..|..
T Consensus 5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~ 84 (395)
T PF08596_consen 5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA 84 (395)
T ss_dssp EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence 456999999999999999999999876543321 0000 0 111111100 011011100
Q ss_pred -ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cC------CCCCCEEEEEEcc-----CC--
Q 008041 65 -SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SD------CHPGGVSAISFAT-----HG-- 129 (579)
Q Consensus 65 -~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~------~h~~~V~~l~~~~-----~~-- 129 (579)
...+++++- .+-.++++|..+|.+.|.|++....+..- .. .....|+++.|.- |+
T Consensus 85 ~~g~vtal~~----------S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 85 KQGPVTALKN----------SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp -S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCCcEeEEec----------CCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 112222222 23788999999999999999888876542 11 2345688888863 33
Q ss_pred -CEEEEEeCCCcEEEEeCC--C-Cce----eeEeecCCCCeeEEE-EccC---------------------CCEEEEEC-
Q 008041 130 -SCIYSAGADGMVCEIDPL--T-GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA- 178 (579)
Q Consensus 130 -~~l~s~~~d~~v~iwd~~--~-~~~----~~~~~~~~~~v~~l~-~~p~---------------------g~~l~~~~- 178 (579)
-.+++|...|.+.+|.+. . +.. ......+.++|..|. ++.+ ..++++++
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 358889999999999764 1 211 111223455555554 3211 11455555
Q ss_pred CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----cCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 179 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s-----~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
..++++..-+.+...+.....-....+.+- ..+..|++-. .+|.+++|.+..-+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI 295 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence 899999998887765554332233344553 2455566655 7999999999987644
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.69 E-value=0.0062 Score=59.97 Aligned_cols=176 Identities=10% Similarity=0.114 Sum_probs=101.4
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEE---EccC----CCEEEEEeC----------CCcEEEEeCCCC----ceeeE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAIS---FATH----GSCIYSAGA----------DGMVCEIDPLTG----SLLGK 154 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~---~~~~----~~~l~s~~~----------d~~v~iwd~~~~----~~~~~ 154 (579)
+.|++.|..+.+.+..+.-.....+++++ |..+ ..+++.|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888877766544322333455443 4332 456776642 288999999874 12222
Q ss_pred e--ecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCe-eeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 155 F--RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 155 ~--~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~-~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
+ ....++|++++-- +|.++++.++.|++|++...+ ....-. .....+.++... +.+++.+. ..+.+.++..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEEEEEEE
Confidence 1 2246789999877 566666666999999998877 433222 223356666655 55787775 45667777554
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
..... ...+.....+.....+... +++..+++++.+|.+.++..+
T Consensus 158 ~~~~~-l~~va~d~~~~~v~~~~~l------~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNK-LILVARDYQPRWVTAAEFL------VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE--EEEEEEESS-BEEEEEEEE-------SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCE-EEEEEecCCCccEEEEEEe------cCCcEEEEEcCCCeEEEEEEC
Confidence 42211 1122222223333333333 455689999999999999764
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.022 Score=57.36 Aligned_cols=192 Identities=13% Similarity=0.152 Sum_probs=129.6
Q ss_pred EEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 11 TSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fspdg~~-lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+++++++.. +++...++.|.+.|..+.+......... .. ..+.+.+. +..+
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P------------------~~~~~~~~---------~~~v 130 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GP------------------VGLAVDPD---------GKYV 130 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CC------------------ceEEECCC---------CCEE
Confidence 378888874 4445456899999977777665543111 11 12333332 4445
Q ss_pred EEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-E----eecCCC
Q 008041 90 VLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K----FRASTK 160 (579)
Q Consensus 90 ~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~-~----~~~~~~ 160 (579)
.++.. ++.+.+.|..+++.......+. .+ ..+++.|+|+.++.+. .++.|.+.|.......+ . .. -..
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~ 207 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGT 207 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCC
Confidence 55555 5779999999999887754433 34 8999999999776665 78999999976555442 1 11 123
Q ss_pred CeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 161 GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
....+.++|+|+.+.+.. +.+...|..++..... ...-......+.++|+|+++.+.-...+.+.+.|..+..
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 456789999999776665 3888999988877655 221111456789999999888875556788888877765
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00032 Score=72.60 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=83.7
Q ss_pred EEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE
Q 008041 121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~ 194 (579)
+-..|+|...+|+.++ ..|.|.||- .+|++-+... ..-.+++++|+|..-.++.|- |.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3457999988888775 467888885 5676544332 223467899999877777776 8999999888776666
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
...|+.+|..+.||++|..++++- .-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 678999999999999999999875 67899999876
No 355
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.65 E-value=1.2e-05 Score=66.96 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=60.5
Q ss_pred hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHh-cccccCCCChhHHHHHHHHHHH
Q 008041 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH-GHHLLSQESLTPMLSSLYKVRK 560 (579)
Q Consensus 492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h-~~~l~~~~~l~~~l~~l~~~~~ 560 (579)
..|+.+|..|+..+..+||+|+. .|+++++.+...+..+.+||+.| ...|...|++...|.+|----+
T Consensus 49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYte 117 (141)
T PF08625_consen 49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTE 117 (141)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHH
Confidence 68999999999999999999998 89999999999999999999955 5567899999988888865544
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.65 E-value=1.3e-05 Score=80.09 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=124.7
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEcc-CCCEEEEEe----CCCc
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM 140 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~~----~d~~ 140 (579)
.+.|++|+.... ..++++|..+|.|.+-..+...-- +.+..+|..++++++|++ |.+.|+.|- .|..
T Consensus 58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 455666665432 467899999999999888754432 456678889999999998 455666653 4567
Q ss_pred EEEEeCCCC--ceeeE--eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEec-CC
Q 008041 141 VCEIDPLTG--SLLGK--FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD-NG 211 (579)
Q Consensus 141 v~iwd~~~~--~~~~~--~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~-~~ 211 (579)
+.|||+.++ .+... |.+ ......+++|..+.+++.+|. ..+.++|++.. .....+ .+..+..+.+.| .+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999876 22222 332 233667899998888888887 68999999843 222222 234566777888 67
Q ss_pred CEEEEEecCCCeEEEEEc-CCCccccceeeeeeecCce----eEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcC
Q 008041 212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHPAV----FMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQ 282 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 282 (579)
.|+++. .|+.|-+||. +.-+.. ...+.+... .+..+.|.+. ..|. +++. -..++|+.||+.
T Consensus 209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycPt---rtgl-la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCPT---RTGL-LAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEeccC---Ccch-hhhhccCcceEEEeccc
Confidence 787664 4999999994 332211 111112211 1333444411 2333 4444 446799999864
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00079 Score=68.70 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=99.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeE--e-ecCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK--F-RAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~--~-~~~~ 159 (579)
..++++|+..|.+++|+-..++.......+..+.+..+..+++..+++.|+..|.|.++-+..+.+ ... + +.|+
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 788999999999999999988875444344555677778899988899999999999998765422 111 1 1256
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
..|+|++|++++..+.+|+ |.|.+-.+.+.. ....+..-.+.|-.+.... +..|++.. . .-.+++.+..
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl-~--r~~Lc~tE~e 199 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTL-T--RCILCQTEAE 199 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhh-h--hhheeecchh
Confidence 7999999999999999999 888887776621 1222233456777776643 33444432 2 2344555443
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.074 Score=51.28 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=88.4
Q ss_pred CCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008041 118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~v 183 (579)
..-+.+...|+|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.+..+. +.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34678888999986554433 134555554 5666666665555668899999999888887 78888
Q ss_pred EECCC--C----ee-eEEeecCCCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041 184 FNCSD--H----KK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (579)
Q Consensus 184 wd~~~--~----~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (579)
|++.. + +. ...+....+..-.++...+|.+.+++. .+| .|.+|+.. ++.. ....-+.....+.+|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F 262 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF 262 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence 87752 1 11 122223445566778888888775443 444 89999988 5533 333344344455555
Q ss_pred cCCcccCCCcEEEEEEc
Q 008041 256 DNGGVDDAGLYVLAISE 272 (579)
Q Consensus 256 ~~~~~~~~~~~l~~~~~ 272 (579)
- -|+.+.|++.+.
T Consensus 263 g----G~~~~~L~iTs~ 275 (307)
T COG3386 263 G----GPDLNTLYITSA 275 (307)
T ss_pred e----CCCcCEEEEEec
Confidence 4 155555555544
No 359
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.48 E-value=0.00052 Score=63.03 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=79.7
Q ss_pred chhhhhhccce---------eecccCChhhHHHHhhccC------hhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 008041 473 SALEATLFNGI---------DFETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN 537 (579)
Q Consensus 473 ~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp------~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~ 537 (579)
..+...|..+- +.++..+++.|+..||.|. ...+..||+++..++.++. ..++++.|+...|+.
T Consensus 111 s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~-dfElvQa~l~vFLk~ 189 (237)
T PF04192_consen 111 SEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRR-DFELVQAYLSVFLKV 189 (237)
T ss_pred CHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 34555555543 4667789999999999999 6778899999998886665 599999999999999
Q ss_pred hcccccCCCC---hhHHHHHHHHHHHH---hh-----hhhhhhhce
Q 008041 538 HGHHLLSQES---LTPMLSSLYKVRKK---KL-----FASAFTCFI 572 (579)
Q Consensus 538 h~~~l~~~~~---l~~~l~~l~~~~~~---r~-----~~~~~~~~~ 572 (579)
|+..|+..++ |...|..|.+..++ |+ |++-+.+|+
T Consensus 190 Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl 235 (237)
T PF04192_consen 190 HGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFL 235 (237)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 9999999999 99999999988874 44 555555554
No 360
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.47 E-value=0.079 Score=49.06 Aligned_cols=175 Identities=11% Similarity=0.114 Sum_probs=111.6
Q ss_pred EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fspdg~~lasg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|..+|.++-+.+.-| .|+.+|..+|+......-.. ..| +..++.+ ++.+.
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----~~F---------gEGit~~-------------~d~l~ 103 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----RYF---------GEGITIL-------------GDKLY 103 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----T-----------EEEEEEE-------------TTEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----ccc---------ceeEEEE-------------CCEEE
Confidence 5656777777766544 79999999998776543111 111 1111111 14555
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (579)
...-.++...+||..+-+.+.++. ..+.=++++ .||+.|+.......++.+|..+.+..+.+.... ..++.
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 666678899999999988877663 234557777 467778777777889999998887777655432 25666
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec------------C---CCCEEEEEEecCCCEEEEEe
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~------------h---~~~v~~l~~s~~~~~l~s~~ 218 (579)
+.+- +|.+.|-.- ..|...|..+|+++..+.- + ..-.+.|++.|....|+.+|
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7776 676666554 7899999999998776520 1 24578999999887777766
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.47 E-value=0.082 Score=49.14 Aligned_cols=193 Identities=12% Similarity=0.153 Sum_probs=105.1
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
.+-+.|.+.+ +.++++....+.|..++. +|+.+.++.-.-.+..-++++..++.++++.-.++.+.++++.
T Consensus 24 ~SGLTy~pd~--------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 24 LSGLTYNPDT--------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ccccEEcCCC--------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 5567777654 567778888888988886 4777766633334568899998888777766568999999884
Q ss_pred CCc------eeeEee-----cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---CeeeE--Ee------ecCCCCEE
Q 008041 148 TGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQ--KF------SGHPGAVR 203 (579)
Q Consensus 148 ~~~------~~~~~~-----~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---~~~~~--~~------~~h~~~v~ 203 (579)
... ....+. .+...+-.++|+|.++.|+.+- .-..+|.++. ...+. .. ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2345789999999877777766 3344444432 11111 11 12335578
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec-------CceeEEeEEecCCcccCCCcEEEEEEcCCeE
Q 008041 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 276 (579)
++.++|....|+.-+..++.|..+|.. ++.. ....+.. .-.-...+++. ++|. |...++-+..
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~---~~~~L~~g~~gl~~~~~QpEGIa~d-----~~G~-LYIvsEpNlf 244 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELDRQ-GRVV---SSLSLDRGFHGLSKDIPQPEGIAFD-----PDGN-LYIVSEPNLF 244 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-TT---EE---EEEE-STTGGG-SS---SEEEEEE------TT---EEEEETTTEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEECCC-CCEE---EEEEeCCcccCcccccCCccEEEEC-----CCCC-EEEEcCCceE
Confidence 999999876666666688899999944 4322 1222222 11224566676 7775 4555666666
Q ss_pred EEE
Q 008041 277 YIW 279 (579)
Q Consensus 277 ~iw 279 (579)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.44 E-value=0.015 Score=51.62 Aligned_cols=203 Identities=11% Similarity=0.111 Sum_probs=117.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCC--CceeeEeec---
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLT--GSLLGKFRA--- 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~d~~v~iwd~~~--~~~~~~~~~--- 157 (579)
++++.+--..|.|.-||..+++.......+. ++.++.+--.| .+.+.++..-.|--||... ....+++..
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 6777888888999999999887754443332 24444443222 2333344444455677432 222333111
Q ss_pred --CCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 158 --~~~~v~~l~~~p~g~~l~~~~-----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
.+...+.-..+|+|++++... |.++.|-.. ..+..+...-.--+.++|+.+.+.+...-+.+-.|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 133566677899999955432 345555332 12222333334456789998887776655567778
Q ss_pred EEEE--cCCCccccceeeeeeec----CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041 225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
.-|| ..++.......++.+.. .......+++. .+|...++.=..|+|.-+|..+|+.+..++-....+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 7788 66665444444444433 22222333443 567777777777899999999999987765443333
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.043 Score=58.14 Aligned_cols=124 Identities=12% Similarity=0.192 Sum_probs=70.8
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
.|.+++.. +.. ..+..+. ..+.-.|+|+|..+++.... +.+.+.++..+.... ...+.|..
T Consensus 380 ~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Iss 452 (591)
T PRK13616 380 SLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISE 452 (591)
T ss_pred EEEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCe
Confidence 35555542 222 2333332 37888999998887776532 233333443333222 23457999
Q ss_pred EEEccCCCEEEEEC-CeEEE---EECCCCee-e---EEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 165 MAVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 165 l~~~p~g~~l~~~~-~~i~v---wd~~~~~~-~---~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
+.|+|||+.++... +.|++ -....|.. + ..+. +-...+.++.|.+++..++. . .++.-.+|.+
T Consensus 453 l~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~-~~~~~~v~~v 524 (591)
T PRK13616 453 LQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG-R-SDPEHPVWYV 524 (591)
T ss_pred EEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEE-e-cCCCCceEEE
Confidence 99999999888766 77776 44344531 1 1122 22334688999999986544 3 2333344543
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.38 E-value=0.036 Score=55.55 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=107.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++| .+++.|.=| ++|.|..+|.+.|.|++....+..-.-.. .......+..++++.|..-.-+.
T Consensus 85 ~~g~v--tal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------~~~~~~~~~~vt~ieF~vm~~~~- 150 (395)
T PF08596_consen 85 KQGPV--TALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------SFLSKSSSSYVTSIEFSVMTLGG- 150 (395)
T ss_dssp -S-SE--EEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG------------T-SS----EEEEEEEEEE-TT-
T ss_pred cCCcE--eEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------cccccccccCeeEEEEEEEecCC-
Confidence 46889 545877545 99999999999999998888776522111 00112334456677776422110
Q ss_pred cccCCcEEEEEECCCeEEEEEccC---CeEEEE---ecCCCCCCEEEEE-EccC-C-------------------CEEEE
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSA---GQLKWR---LSDCHPGGVSAIS-FATH-G-------------------SCIYS 134 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~---~~~~~~---~~~~h~~~V~~l~-~~~~-~-------------------~~l~s 134 (579)
.....-++++|+..|.+.+|.+.- +..... ....+.++|..+. |+.+ | +.++.
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 001145789999999999998752 222111 1124667776665 3222 1 12444
Q ss_pred EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc-----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----CCEE
Q 008041 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS-----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GAVR 203 (579)
Q Consensus 135 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-----p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~----~~v~ 203 (579)
...+..++++...+.+...+.....-....+.+- ..+..|++-. |.|++|.+-.-+.+..+.-.. ..+.
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 4557789999988887766544222233334442 2334444333 999999999888887776432 2234
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 204 FMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
...++++|..++-.+ ...+.++.+
T Consensus 311 ~ssis~~Gdi~~~~g--psE~~l~sv 334 (395)
T PF08596_consen 311 SSSISRNGDIFYWTG--PSEIQLFSV 334 (395)
T ss_dssp T-EE-TTS-EEEE-S--SSEEEEEEE
T ss_pred ccEECCCCCEEEEeC--cccEEEEEE
Confidence 456677777666553 334444443
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00077 Score=67.89 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=73.4
Q ss_pred cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEE
Q 008041 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI 144 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~d~~v~iw 144 (579)
..+.-+.|.|. -.+||+++.+|.|.++... .+.++.+ .-|..+++ +++|.|||+.++.|-.||+|++.
T Consensus 21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 34455677765 6789999999999999988 6666666 34666777 99999999999999999999999
Q ss_pred eCCCCceeeEeec-CCCCeeEEEEcc
Q 008041 145 DPLTGSLLGKFRA-STKGISCMAVSS 169 (579)
Q Consensus 145 d~~~~~~~~~~~~-~~~~v~~l~~~p 169 (579)
|..++..+..+.. ....|.++-|+|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999887776322 344778888873
No 366
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.38 E-value=0.035 Score=55.52 Aligned_cols=75 Identities=11% Similarity=0.259 Sum_probs=51.2
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecC-----------------CCEEEEEecC
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDN-----------------GKYVLSSAVG 220 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v~~l~~s~~-----------------~~~l~s~~~~ 220 (579)
.+.+++.+|++++.++.+ |.|.++|+.++..++.++|..+. +.-+..... ..+|+.-.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 467889999999988888 99999999999888777765432 111111111 1244444446
Q ss_pred CCeEEEEEcCCCccc
Q 008041 221 ERYIALWRTDGVKKQ 235 (579)
Q Consensus 221 d~~i~vwd~~~~~~~ 235 (579)
-|.|.||+++.+...
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 788999998887633
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.37 E-value=0.025 Score=59.41 Aligned_cols=193 Identities=15% Similarity=0.191 Sum_probs=116.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE----------EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS----------AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~----------~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+..+++++.++.|+-+|..+|+.++++...-...+. .+.+ .+..++.++.|+.+...|..+|+.+..+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 567888899999999999999999887432111111 1222 2346777888999999999999988775
Q ss_pred ecCCC----CeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCC------------------------
Q 008041 156 RASTK----GISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPG------------------------ 200 (579)
Q Consensus 156 ~~~~~----~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~------------------------ 200 (579)
..... .+++--.--++.+++..+ |.|+.+|.++|+.+-++..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 53211 111111111455554331 6899999999988766532110
Q ss_pred -------CE-EEEEEecCCCEEEEEecC----CC-----------eEEEEEcCCCccccceeeeeeecCce-e------E
Q 008041 201 -------AV-RFMTFSDNGKYVLSSAVG----ER-----------YIALWRTDGVKKQSASCVLAMEHPAV-F------M 250 (579)
Q Consensus 201 -------~v-~~l~~s~~~~~l~s~~~~----d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~-~------~ 250 (579)
.+ ..+.+.|....++.+..+ ++ .|.--|+++++.. -.++..+++. . .
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~---W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK---WHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE---EeeeCCCCCCccccCCCCc
Confidence 11 123555555555554422 11 5666677777644 3333333221 1 1
Q ss_pred EeEEecCCcccCCCc---EEEEEEcCCeEEEEEcCCceeec
Q 008041 251 DCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
..+... .+|+ .++.++.+|.++++|-.+|+.+.
T Consensus 304 ~l~d~~-----~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 304 ILFDLK-----KDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEEec-----cCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 111121 3555 77888999999999999998874
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.34 E-value=0.02 Score=58.13 Aligned_cols=131 Identities=11% Similarity=0.182 Sum_probs=75.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.++++ ..+|.-.||........ ..+.-..++|.+.+ .+++-...++|.++.--+.+....++.. ..+..|
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I 114 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI 114 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred CCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence 555666 78888888885544432 12345667888855 4666666888999632222222233322 223333
Q ss_pred EEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 166 ~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
-. |.+|...+ +.|.+||+.+++.++.+... +|..+.|+++|.+++..+ +..+.+++....
T Consensus 115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~~ 175 (443)
T PF04053_consen 115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNLE 175 (443)
T ss_dssp E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-HH
T ss_pred Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecch
Confidence 32 88887777 77999999999999998733 489999999999998886 457888775543
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0023 Score=68.54 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=72.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE-
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC- 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~- 164 (579)
+..+++|+..|.+...|...+-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 5668999999999999887652211111224579999999999999999999999999999999998888777665444
Q ss_pred --EEEccCCCEEEEEC
Q 008041 165 --MAVSSDGKMLATAA 178 (579)
Q Consensus 165 --l~~~p~g~~l~~~~ 178 (579)
+.+..++..+++++
T Consensus 179 i~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSD 194 (1206)
T ss_pred EEEEEeCCCcEEEEcc
Confidence 44556777788887
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.31 E-value=0.016 Score=45.62 Aligned_cols=102 Identities=17% Similarity=0.278 Sum_probs=63.5
Q ss_pred ccceEE-EEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 6 IRDILT-SFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 6 V~~l~~-~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
|+++|+ .|.-|| +.|+.|+.|..|+||+- ...+.++..... ++++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~-------------------v~~L~~~~-------- 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDK-------------------VTSLCSLG-------- 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccc-------------------eEEEEEcC--------
Confidence 444432 344455 58999999999999983 456666653221 22222211
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEE
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVC 142 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~~-~l~s~~~d~~v~ 142 (579)
...++.+..+|+|-+|+- ...+++....|. ++++.+.. ||. .|++|-.+|.|-
T Consensus 53 --~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 --GGRFAYALANGTVGVYDR--SQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCEEEEEecCCEEEEEeC--cceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 566999999999999975 344555543333 66665543 332 488888888774
No 371
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.29 E-value=0.23 Score=49.60 Aligned_cols=162 Identities=11% Similarity=0.125 Sum_probs=90.3
Q ss_pred EEEEEccCCeEEE-Eec---CCCCCCEEEEEEccCCCEEEEE--eCCC---cEEEEeCCCCceeeEeecC-CC---CeeE
Q 008041 98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC 164 (579)
Q Consensus 98 i~iwd~~~~~~~~-~~~---~~h~~~V~~l~~~~~~~~l~s~--~~d~---~v~iwd~~~~~~~~~~~~~-~~---~v~~ 164 (579)
+.++|+.+++... ... ..-..-+..+.|.++++.|+.. ..+. .+.++|..++.....+... .+ ....
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 6667777776531 111 1233458899999999844433 3332 4667788777654433322 22 2235
Q ss_pred EEEc-cCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEE-EEEecCCCEEEEEecCC----CeEEEEEcC-CC
Q 008041 165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV 232 (579)
Q Consensus 165 l~~~-p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~~d----~~i~vwd~~-~~ 232 (579)
..+. +++..++..+ .+|++++...+. ...+....-.|.. +.++++++.++..+..+ ..|+.-++. .+
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 5655 7777666554 488899987776 3456656667755 67888888666555332 245555666 33
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
... .+...........|+ |++++++-..
T Consensus 319 ~~~------~LT~~~~~~~~~~~S-----pdg~y~v~~~ 346 (353)
T PF00930_consen 319 EPK------CLTCEDGDHYSASFS-----PDGKYYVDTY 346 (353)
T ss_dssp EEE------ESSTTSSTTEEEEE------TTSSEEEEEE
T ss_pred CeE------eccCCCCCceEEEEC-----CCCCEEEEEE
Confidence 322 222222111345666 8988876554
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.18 Score=51.21 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=58.2
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCC
Q 008041 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA 201 (579)
Q Consensus 125 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-~~~ 201 (579)
++.+....+....++.+.+.+-...+. +. ..+++..+++||+|+++|.-. |.+.+.+.+-.+.+..+... ...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 344444444444555555444222211 11 246899999999999998776 88888887666666666533 345
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 202 VRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 202 v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
...+.|+-+...++. ....+.+..
T Consensus 262 p~~~~WCG~dav~l~---~~~~l~lvg 285 (410)
T PF04841_consen 262 PKQMAWCGNDAVVLS---WEDELLLVG 285 (410)
T ss_pred CcEEEEECCCcEEEE---eCCEEEEEC
Confidence 677888765433322 244555555
No 373
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.21 E-value=0.082 Score=57.60 Aligned_cols=198 Identities=15% Similarity=0.192 Sum_probs=116.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-------CEEEEEEcc----------------CCCEEEEEeCCCcEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC 142 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-------~V~~l~~~~----------------~~~~l~s~~~d~~v~ 142 (579)
+..+++++.++.|.-.|..+|+.++++...... ....+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 677899999999999999999999887432111 122333321 234788888999999
Q ss_pred EEeCCCCceeeEeecCCCCe-------------eEEEEcc---CCCEEEEE------------CCeEEEEECCCCeeeEE
Q 008041 143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS---DGKMLATA------------AGQLKTFNCSDHKKMQK 194 (579)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~~p---~g~~l~~~------------~~~i~vwd~~~~~~~~~ 194 (579)
-.|.++|+....|.. .+.+ ..+.-.| ++ .+++| +|.|+-+|.++|+.+-.
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999998877642 1111 0111122 34 44444 26799999999998877
Q ss_pred eecC----C-----C--------CE-EEEEEecCCCEEEEEec-----------------CCCeEEEEEcCCCcccccee
Q 008041 195 FSGH----P-----G--------AV-RFMTFSDNGKYVLSSAV-----------------GERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 195 ~~~h----~-----~--------~v-~~l~~s~~~~~l~s~~~-----------------~d~~i~vwd~~~~~~~~~~~ 239 (579)
+..- . + .+ ..+++.+....++.... ..+.|.-.|.++++.. -
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W 428 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---W 428 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---E
Confidence 6421 0 0 01 22344444333333210 1234555566666533 2
Q ss_pred eeeeecCce-e------EEeEEecCCcccCCCc---EEEEEEcCCeEEEEEcCCceeecccCC
Q 008041 240 VLAMEHPAV-F------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 240 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
.+...|++. . ...+.+. ..+|+ .++.++.+|.++++|-++|+.+...+.
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 333322211 0 1111121 02553 789999999999999999998865443
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.20 E-value=0.34 Score=49.60 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=104.1
Q ss_pred CcEEEEE-ECCCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----------cEEEEeCCCC
Q 008041 86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----------MVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~-~~~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----------~v~iwd~~~~ 149 (579)
+++++.+ +.+|. ++++|+.+|+.+...+... .-..+.|.++++.|+....+. .|+.|.+.+.
T Consensus 135 g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 135 GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 6666655 45555 9999999998765443211 112399999988876665333 3788888766
Q ss_pred ce--eeEeecCCCC--eeEEEEccCCCEEEEEC------CeEEEEECCCC----eeeEEeecCCCCEEEEEEecCCCEEE
Q 008041 150 SL--LGKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 150 ~~--~~~~~~~~~~--v~~l~~~p~g~~l~~~~------~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
.. ...|...... ...+..++|+++++... ..+++.++..+ .....+..+...+....-+..+.+++
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI 292 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence 43 2445554443 56888999999988654 35888888874 23334433444443333333444444
Q ss_pred EEec--CCCeEEEEEcCCCccccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCC--eEEEEEcC
Q 008041 216 SSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQ 282 (579)
Q Consensus 216 s~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 282 (579)
.+.. ..+.|...++.......... ....+.. ..+..+... .+.+++....++ .|++|++.
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSLF------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEEE------TTEEEEEEEETTEEEEEEEETT
T ss_pred eeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEEE------CCEEEEEEEECCccEEEEEECC
Confidence 4321 23466667777665321111 2222322 344444332 335555555666 68888888
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.11 E-value=0.0017 Score=39.99 Aligned_cols=39 Identities=33% Similarity=0.693 Sum_probs=33.5
Q ss_pred CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
++.+..+..|...|.++.|++++..+++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 355677788999999999999998888887 799999996
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.10 E-value=0.066 Score=56.71 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=94.3
Q ss_pred CcEEEEEECC-Ce-----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCce--e
Q 008041 86 SSLLVLGTGG-GD-----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----VCEIDPLTGSL--L 152 (579)
Q Consensus 86 ~~~l~~~~~~-g~-----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----v~iwd~~~~~~--~ 152 (579)
+.+.++|+.+ |. +..||+.+++-.. ...-.......-.-.-+|...+.||.||. |-.||..+.+- +
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 5677888888 33 8899999887432 11111111111111226778888988864 67788665432 2
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d~ 222 (579)
..+........ ...-+|++.++|+ .++..||..+++... .+..-.... .++. -++...+.|| .|+
T Consensus 412 a~m~~~r~~~g--v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG-~~~ 486 (571)
T KOG4441|consen 412 APMLTRRSGHG--VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGG-FDG 486 (571)
T ss_pred CCCCcceeeeE--EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECC-ccC
Confidence 11111111111 1223688888877 368899988775432 221111111 1222 3455566665 454
Q ss_pred -----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcC
Q 008041 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQ 282 (579)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~ 282 (579)
+|..||..+.+.. .+...........++. -+++..++|+.|| +|..||..
T Consensus 487 ~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~-------~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVV-------LGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CCccceEEEEcCCCCcee---EcccCccccccccEEE-------ECCEEEEEecccCccccceeEEcCCC
Confidence 3778888887643 2222223333333333 2567777787776 45555543
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.10 E-value=0.24 Score=46.06 Aligned_cols=187 Identities=12% Similarity=0.138 Sum_probs=96.6
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
-++|+|+.+ ++|+....+.|...+. +|+.+..+.-... .+.-.+.+.. +..
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-----------------~D~EgI~y~g----------~~~ 77 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-----------------GDYEGITYLG----------NGR 77 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------SSEEEEEE-S----------TTE
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-----------------CCceeEEEEC----------CCE
Confidence 349999866 4555556788877886 5787776642110 1122222221 344
Q ss_pred EEEEE-CCCeEEEEEccCCe--E----EEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeeE
Q 008041 89 LVLGT-GGGDVLALAVSAGQ--L----KWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---GSLLGK 154 (579)
Q Consensus 89 l~~~~-~~g~i~iwd~~~~~--~----~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~ 154 (579)
+++.. .++.+.++++.... . ...+ ...++..+-+++|.|.++.|+.+-......+|.+.. ......
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 55555 47889888883321 1 1111 123566799999999988888887776666665543 111111
Q ss_pred --e---e---cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCC---------CCEEEEEEecCCCEE
Q 008041 155 --F---R---ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYV 214 (579)
Q Consensus 155 --~---~---~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l 214 (579)
. . .....+.+++++|.. ++++..+ ..|..+| .+|+.+..+.-.. ...-.|+|.++|+..
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1 1 123367899999965 4455554 7888999 6777655543111 346789999999765
Q ss_pred EEEecCCCeEEEE
Q 008041 215 LSSAVGERYIALW 227 (579)
Q Consensus 215 ~s~~~~d~~i~vw 227 (579)
++ + +-+..+++
T Consensus 237 Iv-s-EpNlfy~f 247 (248)
T PF06977_consen 237 IV-S-EPNLFYRF 247 (248)
T ss_dssp EE-E-TTTEEEEE
T ss_pred EE-c-CCceEEEe
Confidence 55 4 55555544
No 378
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0035 Score=63.40 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=76.8
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee-EEEEccCCCEEEEEC--CeEEEEECCCCeeeE
Q 008041 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~ 193 (579)
...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-+...++ +++|.|||+.+++|- |+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999987 888888887777777 999999999999997 999999999998776
Q ss_pred Eee-cCCCCEEEEEEec
Q 008041 194 KFS-GHPGAVRFMTFSD 209 (579)
Q Consensus 194 ~~~-~h~~~v~~l~~s~ 209 (579)
.+. .-...|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2346677777863
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.98 E-value=0.0025 Score=39.25 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.5
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd 145 (579)
..|...|.++.|++++..+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46888999999999999999999999999996
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.056 Score=53.92 Aligned_cols=140 Identities=17% Similarity=0.354 Sum_probs=96.4
Q ss_pred CcEEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEeCCCC-c-eeeEe
Q 008041 86 SSLLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLTG-S-LLGKF 155 (579)
Q Consensus 86 ~~~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~~~d~~v~iwd~~~~-~-~~~~~ 155 (579)
.++|+. +.....++-.|+..|+.+.... -|.. |+-+.+.|+++ .-+.|-.|..|.-||.+-. . .+..-
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 4445569999999999986663 2443 77777777653 2345667889999998732 2 12222
Q ss_pred ecC----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 156 RAS----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 156 ~~~----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
++| .....|.+-..+| ++++|+ |.|++||- .+.. ..-+++-..+|..+..+.+|+++++++ +.++.+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~ 498 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLID 498 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEE
Confidence 222 2367788888777 455555 99999996 5544 334688889999999999999998875 67888877
Q ss_pred cCC
Q 008041 229 TDG 231 (579)
Q Consensus 229 ~~~ 231 (579)
+.-
T Consensus 499 t~~ 501 (644)
T KOG2395|consen 499 TLI 501 (644)
T ss_pred Eec
Confidence 643
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.27 Score=45.43 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=104.8
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeC------------------CCcE
Q 008041 86 SSLLVLGTGG-----GDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGA------------------DGMV 141 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~------------------d~~v 141 (579)
+.+|+..-+| |.|-|||...+-. +.++ ..|.-....+.+.+||+.++.+.. .-++
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl 203 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL 203 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence 5555554443 4599999986533 2233 567777788999999999877632 1123
Q ss_pred EEEeCCCCceeeEe--e--cCCCCeeEEEEccCCCEEEEEC--Ce-----EEEEECCCCeeeEEee-------cCCCCEE
Q 008041 142 CEIDPLTGSLLGKF--R--ASTKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVR 203 (579)
Q Consensus 142 ~iwd~~~~~~~~~~--~--~~~~~v~~l~~~p~g~~l~~~~--~~-----i~vwd~~~~~~~~~~~-------~h~~~v~ 203 (579)
.+.|..+|+.+.+. . -+.-.|..++..+||+..+.+- |. -.+=-...++.+.-+. ...+.|-
T Consensus 204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 44454556555442 2 2334788899999988776654 21 1111112333333221 1234577
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
+|+.+.+..+++.++-..+...+||..++.... . . ....+.-.. +...-+++.+.+|.+.++.
T Consensus 284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~-----~--a--~l~daaGva-----~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVS-----E--A--ALPDAAGVA-----AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred heeecccCCeEEEecCCCCeEEEEEcCCCcEEe-----c--c--cccccccce-----eccCceEEecCCceEEecc
Confidence 888887666666666556678899999986431 1 1 111111111 3445567777889988874
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.96 E-value=0.076 Score=56.36 Aligned_cols=182 Identities=7% Similarity=-0.001 Sum_probs=90.9
Q ss_pred CcEEEEEECC------CeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 008041 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~ 152 (579)
+.++++|+.+ ..+..||+.++... ....-.. .....+ .-+|+..+.||.++ ++..||..+.+-.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 5566666643 24888998887642 1111111 111222 22677777777654 4888998765321
Q ss_pred --eEeecCCCCeeEEEEccCCCEEEEEC--C-----------------------eEEEEECCCCeee--EEeecCCCCEE
Q 008041 153 --GKFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKKM--QKFSGHPGAVR 203 (579)
Q Consensus 153 --~~~~~~~~~v~~l~~~p~g~~l~~~~--~-----------------------~i~vwd~~~~~~~--~~~~~h~~~v~ 203 (579)
..+.........+. -+|++.+.|+ + .+..||..+.+-. ..+...... .
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~ 457 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-P 457 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-C
Confidence 11221111222222 2677777776 1 3677887776432 222111111 1
Q ss_pred EEEEecCCCEEEEEecCC-----CeEEEEEcCC-CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC--e
Q 008041 204 FMTFSDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--V 275 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~ 275 (579)
+++ .-+++..+.||..+ ..+..||+.+ .+-. .+..+.........+. -+|+..++|+.|| .
T Consensus 458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~-------~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---LITTTESRLSALHTIL-------HDNTIMMLHCYESYML 526 (557)
T ss_pred cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCee---EccccCcccccceeEE-------ECCEEEEEeeecceee
Confidence 122 23456656665321 2467888887 4422 2233333333333333 3678888888887 5
Q ss_pred EEEEEcCCc
Q 008041 276 CYIWYGQNI 284 (579)
Q Consensus 276 i~iwd~~~~ 284 (579)
+..||..+.
T Consensus 527 ~e~yd~~~~ 535 (557)
T PHA02713 527 QDTFNVYTY 535 (557)
T ss_pred hhhcCcccc
Confidence 555655443
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.95 E-value=0.48 Score=47.01 Aligned_cols=138 Identities=11% Similarity=0.009 Sum_probs=75.9
Q ss_pred EEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEe--------------------CCCcEEEEeCCCCceeeEe
Q 008041 98 VLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAG--------------------ADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~--------------------~d~~v~iwd~~~~~~~~~~ 155 (579)
+.++|-.+.+...+..... ..--.++-|.|..+.++|.. .-.++.+||+.+.+.++++
T Consensus 159 f~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 159 FVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp EEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred EEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 8888888777765554322 23346778888888888763 2357999999999999998
Q ss_pred ecCCC--CeeEEEEcc--CCCEEEEEC---CeEEEEEC-CCCe----eeEEeecC-----------------CCCEEEEE
Q 008041 156 RASTK--GISCMAVSS--DGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH-----------------PGAVRFMT 206 (579)
Q Consensus 156 ~~~~~--~v~~l~~~p--~g~~l~~~~---~~i~vwd~-~~~~----~~~~~~~h-----------------~~~v~~l~ 206 (579)
.-... .+..+.|.. +..+-.++. ++|..|-- +.++ .+.++..- ..-|+.|.
T Consensus 239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 75433 355677654 445544444 56666543 3432 22222211 24578999
Q ss_pred EecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.|.|.++|..++-.+|.|+.||+......
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 99999999998878999999999886543
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.90 E-value=0.24 Score=47.49 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=89.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---------- 155 (579)
++.+++|+.+| +++++........+.. +..+|..+...|+-+.+++-+ |+.++++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77899999999 9999993333222332 334599999999877766654 699999998754433310
Q ss_pred ----ecCCCCeeEEE---EccCCCEEEEEC-CeEEEEECCCC-----eeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041 156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 156 ----~~~~~~v~~l~---~~p~g~~l~~~~-~~i~vwd~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~ 222 (579)
......+...+ -...+..++++. ..|.+|..... +..+++. -...+..+.|. ++.++.+. .+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence 11122444444 222344555555 78888877653 3455554 45778899998 44666664 45
Q ss_pred eEEEEEcCCCcc
Q 008041 223 YIALWRTDGVKK 234 (579)
Q Consensus 223 ~i~vwd~~~~~~ 234 (579)
...+.|+.++..
T Consensus 158 ~f~~idl~~~~~ 169 (275)
T PF00780_consen 158 GFYLIDLNTGSP 169 (275)
T ss_pred ceEEEecCCCCc
Confidence 588899987653
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.086 Score=48.51 Aligned_cols=124 Identities=17% Similarity=0.322 Sum_probs=83.0
Q ss_pred EEEEEECCCe-EEEEEccCCeEEEEec-------CCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCC-ceee
Q 008041 88 LLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTG-SLLG 153 (579)
Q Consensus 88 ~l~~~~~~g~-i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~-----d~~v~iwd~~~~-~~~~ 153 (579)
-++.+-.=|+ ..++|..+.+.+..+. .+|. .|+|||.+|+..-. -|.|=+||.+.+ +.+.
T Consensus 82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvg 155 (366)
T COG3490 82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVG 155 (366)
T ss_pred eEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceec
Confidence 3555555565 7788888776543331 2343 68999999987643 367999998754 5566
Q ss_pred EeecCCCCeeEEEEccCCCEEEEECCeEE--------------------EEECCCCeeeEE--ee--cCCCCEEEEEEec
Q 008041 154 KFRASTKGISCMAVSSDGKMLATAAGQLK--------------------TFNCSDHKKMQK--FS--GHPGAVRFMTFSD 209 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~~l~~~~~~i~--------------------vwd~~~~~~~~~--~~--~h~~~v~~l~~s~ 209 (579)
.|..|.-....+.+.+||+.++.+.|-|. +.|-.+|+.+.+ ++ -+...|..++..+
T Consensus 156 E~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 156 EFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred ccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence 78888888899999999999999875333 334344444322 22 3345677888888
Q ss_pred CCCEEEEE
Q 008041 210 NGKYVLSS 217 (579)
Q Consensus 210 ~~~~l~s~ 217 (579)
||+.++.+
T Consensus 236 dgtvwfgc 243 (366)
T COG3490 236 DGTVWFGC 243 (366)
T ss_pred CCcEEEEE
Confidence 88755443
No 386
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.80 E-value=0.73 Score=46.84 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=28.0
Q ss_pred CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 199 ~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.+++..+++||+|++++.-. .+|.+.+.+..-.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSE 249 (410)
T ss_pred CCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccc
Confidence 46899999999999998887 68998888765544
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.029 Score=55.84 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=99.1
Q ss_pred ccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 14 SPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 14 spdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
..+.++|. ++..-..|+=.|++.|+.+.+++-+.. +....+.++..-.++. ...-++|
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~--------------------~e~TlvG 400 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT--------------------SEQTLVG 400 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc--------------------ccccEEe
Confidence 34445444 444445677779999999988876554 4444444441111111 3334788
Q ss_pred ECCCeEEEEEccCCeE-EEEecCCCC----CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEE
Q 008041 93 TGGGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMA 166 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~-~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~v~~l~ 166 (579)
-.+..|.-||++-... +-...++|. ..-.|++-..+| +++.||.+|.|++||- .+.... .+++-..+|..+.
T Consensus 401 Ls~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 401 LSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVD 478 (644)
T ss_pred ecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEE
Confidence 8999999999984322 111222332 234566655555 7999999999999995 554444 4778888999999
Q ss_pred EccCCCEEEEEC-CeEEEEEC
Q 008041 167 VSSDGKMLATAA-GQLKTFNC 186 (579)
Q Consensus 167 ~~p~g~~l~~~~-~~i~vwd~ 186 (579)
.+.+|+++++.+ ..+.+.++
T Consensus 479 vtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 479 VTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eeccCcEEEEecccEEEEEEE
Confidence 999999988877 67777665
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.71 E-value=0.62 Score=50.97 Aligned_cols=206 Identities=15% Similarity=0.212 Sum_probs=117.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEE-eeeccccc------ccccCCcEE
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL 89 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l 89 (579)
+..+..++.++.|.-.|..+|+.+..+.......... .+. .+.-+. |....... ........+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~--------~~~--~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR--------QHQ--TCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc--------ccc--cccceEEecCCcccccccccccccccCCEE
Confidence 4567778888999999999999998886432211000 000 000011 11100000 000125678
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCcEEEE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI 144 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-------------~l~~~~--~~~~l~s~~~----------d~~v~iw 144 (579)
++++.|+.+.-.|..+|+.++.+- ..+.|. ...-.| .+..++.|+. +|.|+-+
T Consensus 264 ~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 264 ILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 999999999999999999987652 222110 111112 1335556642 6889999
Q ss_pred eCCCCceeeEeecC---------CC--------Ce-eEEEEccCCCEEEEEC--------------------CeEEEEEC
Q 008041 145 DPLTGSLLGKFRAS---------TK--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC 186 (579)
Q Consensus 145 d~~~~~~~~~~~~~---------~~--------~v-~~l~~~p~g~~l~~~~--------------------~~i~vwd~ 186 (579)
|.++|+.+..+... .+ .+ ..++++|+..++..+. +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99999988876521 00 01 2344555444433311 46777888
Q ss_pred CCCeeeEEeec--CC-------CCEEEEEEec-CCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041 187 SDHKKMQKFSG--HP-------GAVRFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 187 ~~~~~~~~~~~--h~-------~~v~~l~~s~-~~~---~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
++|+..-.++. |. ....-+.+.. +|+ .++.++ .+|.+++.|-++++..
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence 99988777653 21 1111223333 553 555554 8999999999998754
No 389
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.68 E-value=0.094 Score=55.60 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCEEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------
Q 008041 118 GGVSAISFATHGSCIYSAG------ADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------- 179 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~------~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~--------- 179 (579)
..+.+.+++|+|+.++... .|. .+.+++. .+.. ..+.. ....++-.|+|||+.+++.. +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999876654 243 4555564 2333 33322 22478899999988777664 2
Q ss_pred ----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 180 ----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 180 ----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
.+++.+++.+.... ...+.|..+.|||||..++... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 33333443333221 2356799999999999988875 577777
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.62 E-value=0.13 Score=40.53 Aligned_cols=98 Identities=16% Similarity=0.302 Sum_probs=62.6
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE
Q 008041 120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 120 V~~l~~~~---~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~ 193 (579)
|+++++.. +| +.|+.|+.|..|++|+ ..+.+..+.. ...|++++-...++ ++.+. |+|-+|+-. +.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGR-FAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCE-EEEEecCCEEEEEeCc--ceee
Confidence 56666654 33 4599999999999998 3466777764 45788888777655 55444 999999753 2333
Q ss_pred EeecCCCCEEEEEEec-C--C-CEEEEEecCCCeEE
Q 008041 194 KFSGHPGAVRFMTFSD-N--G-KYVLSSAVGERYIA 225 (579)
Q Consensus 194 ~~~~h~~~v~~l~~s~-~--~-~~l~s~~~~d~~i~ 225 (579)
..+. ...+.++.+.. + | +.|+++- .+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~Gw-snGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGW-SNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence 4443 23356665543 2 2 2566665 577664
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.33 E-value=0.98 Score=44.89 Aligned_cols=192 Identities=11% Similarity=0.064 Sum_probs=94.6
Q ss_pred CcEEEEEECCCeEEEEEccCC----eEEEEecCC---C----CCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAG----QLKWRLSDC---H----PGGVSAISFATHGSCIYSAG------ADGMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~---h----~~~V~~l~~~~~~~~l~s~~------~d~~v~iwd~~~ 148 (579)
..+++-|-.++.|+|.|+.+. ++...+ +. + -.....+.--|+|+.++|+- .-|-+.+.|-++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvI-e~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVI-EPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE--HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeee-CHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 334444557888999999853 233222 11 1 11223344457898888863 234688888877
Q ss_pred CceeeEeecCCC---CeeEEEEccCCCEEEEEC----------------------CeEEEEECCCCeeeEEeecCC--CC
Q 008041 149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA 201 (579)
Q Consensus 149 ~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~----------------------~~i~vwd~~~~~~~~~~~~h~--~~ 201 (579)
.+....+..... .-+..-|.|.-+.+++.. +++.+||+.+.+.++++.--. ..
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 777777665332 345677888888888753 379999999999998886332 23
Q ss_pred EEEEEEe--cCCCEEEEEecCCCeEEEEEc-CCCccccceeeeeeecC-----------------ceeEEeEEecCCccc
Q 008041 202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD 261 (579)
Q Consensus 202 v~~l~~s--~~~~~l~s~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 261 (579)
...+.|. |+..+=++++.-..+|..|-- ..++ -..+.+..+... ...+.-+..+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 5677775 444444444334556666554 3332 112223332211 1233444455
Q ss_pred CCCcEEEEEEc-CCeEEEEEcCCc
Q 008041 262 DAGLYVLAISE-TGVCYIWYGQNI 284 (579)
Q Consensus 262 ~~~~~l~~~~~-dg~i~iwd~~~~ 284 (579)
.|.++|...+. +|.|+.||+...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 78899988886 999999998654
No 392
>PHA03098 kelch-like protein; Provisional
Probab=96.25 E-value=0.28 Score=52.17 Aligned_cols=142 Identities=8% Similarity=0.045 Sum_probs=70.4
Q ss_pred CcEEEEEECCC------eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceee
Q 008041 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~ 153 (579)
+.++++|+.++ .+..||+.+++...... .........+. -+++.++.||.+ ..+..||..+++-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45566666443 47889988877532110 10111122222 256677777755 357788877653221
Q ss_pred --EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041 154 --KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 154 --~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d 221 (579)
.+...... .+++ .-++++++.|+ +.+..||..+++-.. .++..... .++ ...+++.++.||..+
T Consensus 373 ~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 373 EPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred CCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccC
Confidence 11111111 1222 23677777766 358899988764322 11111111 122 223555556555211
Q ss_pred -------CeEEEEEcCCCc
Q 008041 222 -------RYIALWRTDGVK 233 (579)
Q Consensus 222 -------~~i~vwd~~~~~ 233 (579)
..+.+||+.+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCCcccceEEEecCCCCc
Confidence 237888887765
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.21 E-value=2.5 Score=46.10 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecC--CC
Q 008041 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDN--GK 212 (579)
Q Consensus 139 ~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~--~~ 212 (579)
..|++++-. .....+... +.++....+.+...++.++ +.+...++..+. ++.... ....|.|+.++|- ++
T Consensus 470 ~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 470 NSIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred ccEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCC
Confidence 347777633 233344433 3344444444444555555 344444555443 333322 2477999999974 33
Q ss_pred E---EEEEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 213 Y---VLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 213 ~---l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
. ++..|.++..+.+--....... .+...+. .-+..+-...+. .|..+|.++..||.+.-|.++
T Consensus 546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~--~~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 546 NKSRLLAVGLWSDISMILTFLPDLIL--ITHEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred CcceEEEEEeecceEEEEEECCCcce--eeeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEEE
Confidence 2 4444457776665543332211 0111111 112222333343 568999999999988766543
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.19 E-value=0.19 Score=52.93 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=71.9
Q ss_pred EEEEECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCC---------CceeeE--
Q 008041 89 LVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLT---------GSLLGK-- 154 (579)
Q Consensus 89 l~~~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~v~iwd~~~---------~~~~~~-- 154 (579)
+++...++ .+.|||...+....+-.-...+.|.++.|. |+|+.+++.|-.+.|.++-... ...++.
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 44445444 499999999886544322457889999985 6899999999999999986421 123333
Q ss_pred eecCC-CCeeEEEEccCCCEEEEECCeEEEEEC
Q 008041 155 FRAST-KGISCMAVSSDGKMLATAAGQLKTFNC 186 (579)
Q Consensus 155 ~~~~~-~~v~~l~~~p~g~~l~~~~~~i~vwd~ 186 (579)
+..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 23344 588999999999998888899999974
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=0.012 Score=52.31 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=76.1
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (579)
.+..-+.+|.|.-+++...+...+....|...-.-+ .-+..+++|+.+|.|++|..... .....+......|.++-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 345566677777777765544322222233321111 23456889999999999987522 21111222222333322
Q ss_pred -EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEE--ecCCCeEEEEEcCC
Q 008041 167 -VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS--AVGERYIALWRTDG 231 (579)
Q Consensus 167 -~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~--~~~d~~i~vwd~~~ 231 (579)
-..++.+..++. |.|+.|++.-++.+.....|. .++..+..+..++++.++ + .|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence 223444555555 899999999888777766676 444444444444444444 3 355555555544
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=1.1 Score=41.95 Aligned_cols=156 Identities=11% Similarity=0.044 Sum_probs=101.5
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
.+.+.|+|. .+.+++.++...-.++=..+|+.+.++.-..-...-++.+..+|++.++--.++.++++.+.
T Consensus 88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 667777775 56678888888888888888888876642223445677888888877777788888888776
Q ss_pred CCceeeE----------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe-e--eEEeecC-------CCCEEEE
Q 008041 148 TGSLLGK----------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-K--MQKFSGH-------PGAVRFM 205 (579)
Q Consensus 148 ~~~~~~~----------~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~-~--~~~~~~h-------~~~v~~l 205 (579)
.+..+.. ......+...++|+|.+..|..+- +-+.||.+..+. . +.....+ -..|+++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5422211 111245788999999988888887 555555444222 1 1111111 1346778
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 206 TFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.|++....+++-|.+++.+...|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 888766666666667888887777665
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.82 E-value=0.32 Score=43.59 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=59.3
Q ss_pred CcEEEEEECCCeEEEEE--ccCCeE-----EEEecC----CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 86 SSLLVLGTGGGDVLALA--VSAGQL-----KWRLSD----CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd--~~~~~~-----~~~~~~----~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
..+.++-+.+..|.-|| ..+|.. +..+.+ +|. ..-+++...+|+.++++-..++|...|..+|+.+.+
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 45567777788887777 666643 223322 111 123455566888888888899999999999999999
Q ss_pred eecCCCCeeEEEEc
Q 008041 155 FRASTKGISCMAVS 168 (579)
Q Consensus 155 ~~~~~~~v~~l~~~ 168 (579)
++-....|+|++|-
T Consensus 249 iklPt~qitsccFg 262 (310)
T KOG4499|consen 249 IKLPTPQITSCCFG 262 (310)
T ss_pred EEcCCCceEEEEec
Confidence 98888899999996
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.78 E-value=1.7 Score=40.51 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=91.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCEEEEEC--CeEEEEECCCCeee
Q 008041 118 GGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM 192 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~ 192 (579)
.-..++.|..+|..+-+.+.-| .|+.+|+.+|+......-... --..++...| ++....= +...+||..+.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence 3456888878888888888766 799999999987766443322 2234444433 3322222 89999999999998
Q ss_pred EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCce---eEEeEEecCCcccCCCcEEEE
Q 008041 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 193 ~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~ 269 (579)
.++.- .+.=..++ .|++.|+.+. ....++.+|..+-+.... ........ .+.-+-+ -+|...|-
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~---i~V~~~g~pv~~LNELE~------i~G~IyAN 190 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRT---IQVTDNGRPVSNLNELEY------INGKIYAN 190 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEE---EE-EETTEE---EEEEEE------ETTEEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEE---EEEEECCEECCCcEeEEE------EcCEEEEE
Confidence 88853 33335555 5666666653 567899999877654321 11112222 2222223 25555554
Q ss_pred EEcCCeEEEEEcCCceeecc
Q 008041 270 ISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~ 289 (579)
.=....|..-|..+|+....
T Consensus 191 VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEE
Confidence 44566777778887776543
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.76 E-value=2 Score=41.32 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=76.4
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEE-CCCCeee
Q 008041 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN-CSDHKKM 192 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd-~~~~~~~ 192 (579)
+-.+.+..+..++||+++++++.-....-||.....-...-+.....|.+|.|.|++.+.+.+. |.|+.=+ ....+..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence 3446788999999999888775555555687432211222223456999999999998877766 7888877 2222221
Q ss_pred EE----eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee-ecCceeEEeEEecCCcccCCCcEE
Q 008041 193 QK----FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 193 ~~----~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
.. +......+..++|.+++...++++ .|.+ +.+.+.++.-. ..... .-+.....+.++. | ..-
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW~--~~~~~~~~~~n~~~i~f~~-----~--~~g 289 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTWQ--KDRVGENVPSNLYRIVFVN-----P--DKG 289 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS-E--E-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccce--ECccccCCCCceEEEEEcC-----C--Cce
Confidence 11 111223478899999887777654 5643 34555554220 11111 1234455556554 3 445
Q ss_pred EEEEcCCeEEEE
Q 008041 268 LAISETGVCYIW 279 (579)
Q Consensus 268 ~~~~~dg~i~iw 279 (579)
++.+.+|.|.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 556788887655
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.68 E-value=0.62 Score=49.50 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=98.6
Q ss_pred CcEEEEEECCC------eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceee
Q 008041 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~ 153 (579)
+.++++|+..+ .+..||+.++.........+...-.++++. +|...++||.| .++..||...++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 56777777774 388999998865422222222334444544 45678888888 357788877665221
Q ss_pred --EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEE-ecCCCEEEEEecCCC-
Q 008041 154 --KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF-SDNGKYVLSSAVGER- 222 (579)
Q Consensus 154 --~~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~-s~~~~~l~s~~~~d~- 222 (579)
.+....... +++. -+|.+.++|+ .++..||..+.+.-..-+ .......... .-+|+..++|| .++
T Consensus 364 ~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG-~~~~ 439 (571)
T KOG4441|consen 364 VAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGG-GDGS 439 (571)
T ss_pred cCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcC-cCCC
Confidence 111111111 1121 2678888887 378999988765322111 1112222222 23465556555 343
Q ss_pred -----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (579)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 284 (579)
++..||..+++.. .+..+........+.. -++...++|+.|| +|..||..+.
T Consensus 440 ~~~l~sve~YDP~t~~W~---~~~~M~~~R~~~g~a~-------~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWT---LIAPMNTRRSGFGVAV-------LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ccccceEEEEcCCCCcee---ecCCcccccccceEEE-------ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 5788888887633 1122222222222222 3667778888776 3566665543
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.65 E-value=0.44 Score=50.65 Aligned_cols=142 Identities=9% Similarity=0.076 Sum_probs=74.7
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC--------------------
Q 008041 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG-------------------- 139 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~-------------------- 139 (579)
+.+.++|+.++ .+..||+.+++-...-. .........+. -+|...+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence 56667777654 38889998876432110 10111111222 2677777776542
Q ss_pred ---cEEEEeCCCCce--eeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCC-Cee--eEEeecCCCCEE
Q 008041 140 ---MVCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSD-HKK--MQKFSGHPGAVR 203 (579)
Q Consensus 140 ---~v~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~-~~~--~~~~~~h~~~v~ 203 (579)
.+..||..+.+- +..+....... +++ .-+|++.+.|+ ..+..||..+ .+- +..++.......
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 477788766532 22221111111 222 23577777776 1367899887 432 333333222222
Q ss_pred EEEEecCCCEEEEEecCCC--eEEEEEcCCCcc
Q 008041 204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVKK 234 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~ 234 (579)
.+.+ +|+..++|| .|+ .+..||+.+.+-
T Consensus 508 ~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH--DNTIMMLHC-YESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE--CCEEEEEee-ecceeehhhcCcccccc
Confidence 2232 567777776 577 677788877653
No 402
>PHA02790 Kelch-like protein; Provisional
Probab=95.64 E-value=1.1 Score=46.83 Aligned_cols=179 Identities=5% Similarity=-0.104 Sum_probs=85.9
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCceee--Ee
Q 008041 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLG--KF 155 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~--~~ 155 (579)
+.++++|+.++ .+..||+.+++...... .........+ .-+|...+.||.+ ..+..||..+++-.. .+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 45566666543 47789998876532111 1011111122 2366666777653 458888876543211 12
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 156 RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
....... ++ ..-+|++.+.|+ ..+..||.++.+-... +...... .++ ..-+++..+.|| .+.+||
T Consensus 350 ~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG----~~e~yd 421 (480)
T PHA02790 350 LKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR----NAEFYC 421 (480)
T ss_pred CCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC----ceEEec
Confidence 1111111 22 223678888877 3577888877643221 1111111 122 223455444443 467888
Q ss_pred cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 284 (579)
+.+++-. .+..+..+.....++. -+|+..+.|+.+ ..+..||..+.
T Consensus 422 p~~~~W~---~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWT---LIDDPIYPRDNPELII-------VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEe---EcCCCCCCccccEEEE-------ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 8776532 2222222222222222 356666777654 24666665543
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=1.9 Score=40.30 Aligned_cols=118 Identities=7% Similarity=0.112 Sum_probs=79.7
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008041 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (579)
Q Consensus 114 ~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~ 190 (579)
.+-...|.++.|+|+.+.+++......-.++=-.+|+.++++.-. -.....|.+..+|++.++-- +.++++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 345566999999999999888887777777766789998886532 12445677776666555554 788887776542
Q ss_pred eeE-----E--e--ecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 191 KMQ-----K--F--SGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 191 ~~~-----~--~--~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+. . + ..+ +...-.++|.|....|+.+= +-+-+.||.....
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~ 212 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQS 212 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecC
Confidence 211 1 1 122 45567899999888877764 5566777766543
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.44 E-value=0.057 Score=35.39 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008041 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 151 (579)
....|.+++|+|....++.++.||.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 5554
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=0.054 Score=48.25 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=62.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (579)
+.-+++|+.+|.|++|+.............-...|- .+.-..++.+.++++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 566899999999999998732211111111112222 22333355678889999999999998888777666666 3444
Q ss_pred EEEEccCCCEEEEE--C--CeEEEEECC
Q 008041 164 CMAVSSDGKMLATA--A--GQLKTFNCS 187 (579)
Q Consensus 164 ~l~~~p~g~~l~~~--~--~~i~vwd~~ 187 (579)
....+..++.++.+ + ..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444555544 2 355556554
No 406
>PHA03098 kelch-like protein; Provisional
Probab=95.36 E-value=1.2 Score=47.49 Aligned_cols=143 Identities=13% Similarity=0.073 Sum_probs=69.3
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceee-
Q 008041 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG- 153 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~- 153 (579)
+.+++.|+.+ ..+..||+.+++....-...+...-.+++ .-+++.++.||.+ ..+..||+.+++-..
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 5666777655 24788998877643211000110011112 2256666666632 458889987653221
Q ss_pred -EeecCCCCeeEEEEccCCCEEEEEC-C---------eEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC
Q 008041 154 -KFRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 154 -~~~~~~~~v~~l~~~p~g~~l~~~~-~---------~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
.+...... .++ ...++++++.|+ . .+.+||..+++-... +.........+. -+++.++.||..
T Consensus 422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 11111111 122 223567777776 1 288899887653321 111111111122 256666666532
Q ss_pred ----CCeEEEEEcCCCc
Q 008041 221 ----ERYIALWRTDGVK 233 (579)
Q Consensus 221 ----d~~i~vwd~~~~~ 233 (579)
.+.+.+||+.+.+
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 2367778877654
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.31 E-value=0.047 Score=35.77 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.9
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~ 39 (579)
++| -+++|+|...+||.|+.||.|.|+.+ +++.
T Consensus 12 ~~v--~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRV--SCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcE--EEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456 46699999999999999999999998 5543
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.074 Score=57.59 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=70.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE
Q 008041 128 HGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (579)
Q Consensus 128 ~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (579)
.+..++.|++.|.|-..|+...- +...=..-.++|++++|+.+|+.++.|- |.|.+||...++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45568888899999998875431 1111112345999999999999999887 89999999999999888877777666
Q ss_pred EEE---ecCCCEEEEEecCCCeEEEEEcC
Q 008041 205 MTF---SDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 205 l~~---s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
+-+ ..++..++++ ..-| .+|.+.
T Consensus 178 vi~v~~t~~nS~llt~-D~~G--sf~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTS-DTGG--SFWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEc-cCCC--ceEEEE
Confidence 543 4455555553 2344 366653
No 409
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.48 Score=47.38 Aligned_cols=153 Identities=13% Similarity=0.118 Sum_probs=94.7
Q ss_pred EEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
-+..|..++. .|+.-..+.=.|++.|+.+.++..+... .+.|.|...-.+.. ...-+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt--------------------~eqtl 531 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT--------------------DEQTL 531 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC--------------------ccceE
Confidence 3455666555 4555566777799999999888766543 23344431111100 23347
Q ss_pred EEECCCeEEEEEccCCe--EE-EEecCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 91 LGTGGGDVLALAVSAGQ--LK-WRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~--~~-~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+|-++..|.-.|++-.. .. .....- ....-.+..-. ...+++.+|..|.|++||--.-+....+.+-...|..+.
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id 610 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID 610 (776)
T ss_pred EeecccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence 77788888877876432 11 111100 11112222222 345899999999999999543333444677777999999
Q ss_pred EccCCCEEEEEC-CeEEEEECC
Q 008041 167 VSSDGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 167 ~~p~g~~l~~~~-~~i~vwd~~ 187 (579)
.+.+|+++++.+ ..+.+-|++
T Consensus 611 vta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeecceEEEEecc
Confidence 999999988877 888888864
No 410
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.13 E-value=3.1 Score=41.80 Aligned_cols=202 Identities=18% Similarity=0.188 Sum_probs=111.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (579)
...+++++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.++.++.+|..+|+.+..+.... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5668888999999999999999876543221 22333333444665 7788899999999998999988887655 1222
Q ss_pred EEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCC---CCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccc
Q 008041 164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA 237 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~~--d~~i~vwd~~~~~~~~~ 237 (579)
.-.+-.++..++... +.++..|..+++...+...-. ..+..--...++ .++.+. . ++.+.-.|...+...-.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~-~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGS-DGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEec-CCCcceEEEEEccCCcEeee
Confidence 223334555555534 888888888888766543221 111111112233 333333 3 44566666666653310
Q ss_pred e-eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041 238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
. ........... ....+..... -.+.-+..++.+|.+.-+|..+++.+-....
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAIS-TTPAVDGGPV-YVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCccccc-ccccccCceE-EECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 0 00111111000 0011110000 0123346667788888899999888765543
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.12 E-value=2.3 Score=46.34 Aligned_cols=174 Identities=10% Similarity=0.070 Sum_probs=108.1
Q ss_pred EEEEEccCCeEEEEecCCCC---CCEEEEEEccC-CCEEEEEe----------CCCcEEEEeCCCCceeeEeecC--CCC
Q 008041 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS--TKG 161 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~-~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~--~~~ 161 (579)
++++|..+-+.+....-... ..|.++.|..| +.+++.|. ..|.|.+|.+..++.+.....+ ++.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 67777777665533321112 23555668877 66676664 3477888877764444433322 345
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+.++..- +|+++|.-+..|++|+..+.+.++.-..|..++..+...-.|..++++- --+.+.+...+..+.. ... .
T Consensus 832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD-lm~Sitll~y~~~eg~-f~e-v 907 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD-LMRSITLLQYKGDEGN-FEE-V 907 (1096)
T ss_pred eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee-ccceEEEEEEeccCCc-eEE-e
Confidence 5555543 6888888889999999999988887778889999999988888888875 4566766665554421 111 2
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.-......+..+.+ -++..++.+..+|.+.+-..
T Consensus 908 ArD~~p~Wmtavei------l~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEI------LDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred ehhhCccceeeEEE------ecCceEEeecccccEEEEEe
Confidence 22233334444444 24455566667777776543
No 412
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=2.2 Score=37.80 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=97.2
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041 16 ALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 16 dg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
+|.++.+.+. ...|++||+.+|+.+....-.. ...|... ++ +.+..+-...-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgEG---------it-------------~~gd~~y~LTw 108 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGEG---------IT-------------KLGDYFYQLTW 108 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC----ccccccc---------ee-------------eccceEEEEEe
Confidence 3445555443 4579999999998876543210 1112111 11 01134445566
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--C---CCeeEEEEc
Q 008041 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--T---KGISCMAVS 168 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~---~~v~~l~~~ 168 (579)
.+|.-..+|..+-+++.++. ..+.=++++. |+..++.++...+++.-|.++.....++... . ..++.+.|-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV 184 (262)
T ss_pred ccceeEEEChHHhhhhcccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence 77888899999887765553 2334455554 5666777666667777777655443332211 1 123344443
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEee------------cCCCCEEEEEEecCCCEEEEEe
Q 008041 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS------------GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~------------~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
||...|-.= ..|...|.++|+.+..+. .|....+.|++.|++..++..|
T Consensus 185 -dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 -DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 555554433 556666677776655442 3445677899999885555544
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.74 E-value=3 Score=37.40 Aligned_cols=137 Identities=13% Similarity=0.199 Sum_probs=82.0
Q ss_pred cEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEE---eCC--CCceee
Q 008041 87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEI---DPL--TGSLLG 153 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iw---d~~--~~~~~~ 153 (579)
+.++++...+.|.+|++.+.+ ...++. --+.|..+.++..|+++++-=.+ ..+|+| ... ..++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 667777888899999998433 344442 34789999999999999986322 245654 322 112222
Q ss_pred -Eeec---------------------CCCCeeEEEEcc-CCCEEEEECCeEEEEECCCCee------eEEee-----cCC
Q 008041 154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK------MQKFS-----GHP 199 (579)
Q Consensus 154 -~~~~---------------------~~~~v~~l~~~p-~g~~l~~~~~~i~vwd~~~~~~------~~~~~-----~h~ 199 (579)
.+-+ -..++.|++..| .|++++...+.+.+|.+..... +..|. -|.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123667888887 5666666669999998764322 11121 111
Q ss_pred -CCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 200 -GAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 200 -~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
-....+++. +.|++..+ +..+++..+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 124455555 45777664 666777654
No 414
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.73 E-value=1.3 Score=45.48 Aligned_cols=146 Identities=13% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCEEEEEEccCCCE-EEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC-----CEEEEEC-CeEEEEECC-
Q 008041 118 GGVSAISFATHGSC-IYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG-----KMLATAA-GQLKTFNCS- 187 (579)
Q Consensus 118 ~~V~~l~~~~~~~~-l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g-----~~l~~~~-~~i~vwd~~- 187 (579)
-+|.+++|. ||+. +++.- .+|.+++=| .+.+..| ..|..+.|.|-+ .+||+-. ..|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899996 5665 44432 233333322 2233333 367889999853 4666666 799999886
Q ss_pred ----CCeeeEEeecC---CCC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCC
Q 008041 188 ----DHKKMQKFSGH---PGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 188 ----~~~~~~~~~~h---~~~--v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
.++.+..-..+ .-+ -..+.|+|....|++-...| .-.+++++..... +...-.....+.|.+|.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~sr----VkaDi~~~G~IhCACWT-- 164 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSR----VKADIKTSGLIHCACWT-- 164 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCce----EEEeccCCceEEEEEec--
Confidence 23333332221 112 24678999988887765333 3344565554322 22223556678999998
Q ss_pred cccCCCcEEEEEEc-CCeEEEEEc
Q 008041 259 GVDDAGLYVLAISE-TGVCYIWYG 281 (579)
Q Consensus 259 ~~~~~~~~l~~~~~-dg~i~iwd~ 281 (579)
+||+.|+++-. .=.-++||-
T Consensus 165 ---~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 165 ---KDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ---CcCCEEEEEeCCeEEEEEecC
Confidence 89998877744 336788883
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=94.69 E-value=2.8 Score=43.75 Aligned_cols=140 Identities=9% Similarity=-0.051 Sum_probs=66.9
Q ss_pred CcEEEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEE-EEEccCCCEEEEEeCCC---cEEEEeCCCCceee--Eeec
Q 008041 86 SSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADG---MVCEIDPLTGSLLG--KFRA 157 (579)
Q Consensus 86 ~~~l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~--~~~~ 157 (579)
+.+.++|+.++ .+..||+.+++.... ..-..+... ....-+|+..+.||.++ .+..||..+++-.. .+..
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~--~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNM--PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEEC--CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 55566666533 488899877654311 111111111 11122677777777543 47788876553221 1111
Q ss_pred CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCC-----CeEEEEEcC
Q 008041 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYIALWRTD 230 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-----~~i~vwd~~ 230 (579)
.... .+++ .-+|++.+.| |.+.+||.++++-. ..+....... +++. -+|+..+.||. + ..+..||..
T Consensus 397 ~r~~-~~~~-~~~~~IYv~G-G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~-~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 PHYK-SCAL-VFGRRLFLVG-RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGF-YRGSYIDTIEVYNNR 470 (480)
T ss_pred cccc-ceEE-EECCEEEEEC-CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCc-CCCcccceEEEEECC
Confidence 1111 1222 2345555554 56778888776543 2222111111 2222 35666666653 3 346667766
Q ss_pred CCc
Q 008041 231 GVK 233 (579)
Q Consensus 231 ~~~ 233 (579)
+++
T Consensus 471 ~~~ 473 (480)
T PHA02790 471 TYS 473 (480)
T ss_pred CCe
Confidence 654
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.35 E-value=4.7 Score=37.97 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=69.4
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEe-CCCCceee-EeecC--CCCeeEEEEccCCCEEEEEC-----CeEEEEECC--
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS-- 187 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~-- 187 (579)
.++...|++++...+....+...+++. ..++.... ..... ...|.++.++|||..++... +.|++--+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 678889999977666655566666663 33343222 12211 12899999999999887654 567666443
Q ss_pred -CC--e----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE-EEcCC
Q 008041 188 -DH--K----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDG 231 (579)
Q Consensus 188 -~~--~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v-wd~~~ 231 (579)
.+ . .+.........+..+.|.+++.+++.+...+..+.. .....
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 22 1 112222334678999999999887777655554444 34433
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.23 Score=54.36 Aligned_cols=153 Identities=7% Similarity=-0.022 Sum_probs=94.3
Q ss_pred eEEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 9 ILTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 l~~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
+.+...+|+...++... +-.|..||+++-....-.+.. + +.++.. .-....-..|+.|.|.- .
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~--p---l~~s~t--s~ek~vf~~~~~wnP~v--------p 168 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV--P---LKNSAT--SFEKPVFQLKNVWNPLV--------P 168 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc--c---cccccc--hhccccccccccccCCc--------c
Confidence 44467778776655443 346788898754322111000 0 000000 00012244578888765 3
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v 162 (579)
...+++..|+.|.+..+.......... .....+++++|+|.|+.++.|-..|++.-|-. ..+....+.+. ...|
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrv 246 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRV 246 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcce
Confidence 446888899999888776443322221 34567899999999999999999999999875 45544444432 3589
Q ss_pred eEEEEccCCCEEEEEC
Q 008041 163 SCMAVSSDGKMLATAA 178 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~ 178 (579)
.+++|-....++++-+
T Consensus 247 l~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eEEEEecceeEEEEec
Confidence 9999987776766654
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.30 E-value=0.045 Score=57.96 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=74.5
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE-----------EccCCCEEEEE
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSA 135 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~ 135 (579)
...-+.|.+.-.. ..++..+..+|.|++.+..+... .++.+|...++.++ .+|||..|+.+
T Consensus 182 ~~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred Ccceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 3356677765543 45567777888888776655433 33455776655543 57999999999
Q ss_pred eCCCcEEEEeCC-----CCceeeEeecCCC-CeeEEEEccCC---------CEEEEEC---CeEEEEECCCCeee
Q 008041 136 GADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM 192 (579)
Q Consensus 136 ~~d~~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~~p~g---------~~l~~~~---~~i~vwd~~~~~~~ 192 (579)
+.||.++.|.+. ..++...++.|.+ +-.|.-++.+. .+++++. ..+++|.....+|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999998888753 2345666777774 33333344322 2344444 47888887766665
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.26 E-value=5.5 Score=38.39 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=72.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceeeE----eecCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK----FRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~~----~~~~~~ 160 (579)
+.+++++....-..-||.-...-...- ..-...|..+.|.|++...+.+ ..|.|+.=+. ...+.... +....-
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 555555544444556776543222111 2345789999999998765544 8888888772 22222111 111222
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
.+..++|.+++...++|++-..+...+.|+.-..-. .-......+.|.++.+-++.+ .+|.|--|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence 578999999999999888333445566666544432 234567889998776666664 58877655
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.23 E-value=2.8 Score=45.58 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=28.8
Q ss_pred CCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 008041 115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 115 ~h~~~V~~l~~~~~---~~~l~s~~~d~~v~iwd~~~~ 149 (579)
.+...|..+.|+|. +.+|+.=..|+++++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 35567999999995 578888889999999998654
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.15 E-value=5.1 Score=37.69 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=54.1
Q ss_pred CcEEEEEECCCeEEEEE-ccCCeEEE-Eec-CCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCC---CC------c
Q 008041 86 SSLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------S 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd-~~~~~~~~-~~~-~~h~~~V~~l~~~~~~~~l~s~~---~d~~v~iwd~~---~~------~ 150 (579)
+...++...+....++. ...+.... ... ..-...|+++.++|||..++... .++.|.+--+. .+ .
T Consensus 77 g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 77 GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 34445555555555553 33333221 111 11112899999999999977655 35677776443 22 1
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008041 151 LLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
...........+..++|.+++.+++.+.
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeC
Confidence 1122222345889999999999888876
No 422
>PRK10115 protease 2; Provisional
Probab=93.95 E-value=12 Score=41.10 Aligned_cols=98 Identities=8% Similarity=0.023 Sum_probs=60.1
Q ss_pred CcEEEEEEC-CCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC--cee
Q 008041 86 SSLLVLGTG-GGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL 152 (579)
Q Consensus 86 ~~~l~~~~~-~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~--~~~ 152 (579)
+++|+.+.. +|. |++.|+.+|+.+.....+ .-..++|.+|++.|+.+..+ ..|+.+++.++ +..
T Consensus 138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 555655543 343 999999888743333221 12569999999876665432 36888888887 444
Q ss_pred eEeecCCCCee-EEEEccCCCEEEEEC-----CeEEEEEC
Q 008041 153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC 186 (579)
Q Consensus 153 ~~~~~~~~~v~-~l~~~p~g~~l~~~~-----~~i~vwd~ 186 (579)
..+........ .+..+.++++++... +.+.+|+.
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 45554334333 333444888766544 57888884
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=93.90 E-value=7.2 Score=38.48 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=82.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEE-eCCCCceeeEee-cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008041 117 PGGVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iw-d~~~~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~ 193 (579)
...+.++.+.|++.+++++ ..|.+..- | ..++...... .....++++.+.|+++.++++. |.+++=..+.+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4568899999988666554 56655432 2 2223222222 2345889999999999888887 666432344444322
Q ss_pred Eeec----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeee-eecCceeEEeEEecCCcccCCCcEEE
Q 008041 194 KFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 194 ~~~~----h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
.... ....+..+.+.|++..+++ + .+|.+. .....++.- ..... ...+......++. .++ ..+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~~-~~~ 317 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DPE-KGF 317 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CCC-ceE
Confidence 2211 1234778899998876655 4 477554 444444321 11110 0112233344443 233 445
Q ss_pred EEEcCCeEEEEEc
Q 008041 269 AISETGVCYIWYG 281 (579)
Q Consensus 269 ~~~~dg~i~iwd~ 281 (579)
..+..|.|.-|+-
T Consensus 318 ~~G~~G~il~~~~ 330 (334)
T PRK13684 318 VLGQRGVLLRYVG 330 (334)
T ss_pred EECCCceEEEecC
Confidence 5667788887753
No 424
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=93.81 E-value=0.13 Score=43.67 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=69.6
Q ss_pred hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHhh--hhhhhh
Q 008041 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL--FASAFT 569 (579)
Q Consensus 492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~~~l~~l~~~~~~r~--~~~~~~ 569 (579)
..++..+..-....+.++|+|+. +.-.+|+....++.++..+|-.++..+-..|.+...+..|+..+.+-+ +..+..
T Consensus 62 ~~L~~AL~~Rde~~L~piL~Fl~-k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~ 140 (148)
T PF09384_consen 62 GALRAALAGRDEESLEPILKFLI-KNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKELLE 140 (148)
T ss_pred cHHHHHHHhCCHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888899999999999999 555899999999999999999999999998888899999999988777 555554
Q ss_pred hceeeeE
Q 008041 570 CFILLYL 576 (579)
Q Consensus 570 ~~~~~~~ 576 (579)
..|-|.|
T Consensus 141 l~G~ld~ 147 (148)
T PF09384_consen 141 LQGMLDM 147 (148)
T ss_pred HHhHHhh
Confidence 4444433
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.62 E-value=3.9 Score=42.10 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=74.1
Q ss_pred CCCCEEEEEEccC----CCEEEEEeCCCcEEEEeCC-----CCceeeEeecCCC-----CeeEEEEccCCCEEEEEC-Ce
Q 008041 116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRASTK-----GISCMAVSSDGKMLATAA-GQ 180 (579)
Q Consensus 116 h~~~V~~l~~~~~----~~~l~s~~~d~~v~iwd~~-----~~~~~~~~~~~~~-----~v~~l~~~p~g~~l~~~~-~~ 180 (579)
.-..|.++.|.|- -..+++.-....|.+|.+. .++.+.....+-. -...+.|+|....|++-. ..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3456899999984 3356666788899999875 2233322222111 224578999988887755 44
Q ss_pred E-EEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 181 L-KTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 181 i-~vwd~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
+ .+++++. .+....+. ..+.|.|.+|.+||+.|+.+-...=.-++||-...
T Consensus 135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 4 4445543 33334443 56789999999999988876533345688886544
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.33 E-value=3.6 Score=43.63 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=69.3
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe--cCCCEEEEEecCCCeEEEEEcCC--
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS--DNGKYVLSSAVGERYIALWRTDG-- 231 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s--~~~~~l~s~~~~d~~i~vwd~~~-- 231 (579)
-..+.-+.-+.-++..++-. .++.|||.+.+....+-. ...+.|..+.|. |+|+.+++.| -.+.|.+|.-..
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYD 107 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchh
Confidence 33555566666555555544 689999999887433222 346889999885 7899998888 588898885321
Q ss_pred --Cccccceeeee---eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 232 --VKKQSASCVLA---MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 --~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
........+.. ..+....+....|- ++|..++++ .+.+.|||
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence 11111112222 22333445555554 677765543 46888887
No 427
>PRK10115 protease 2; Provisional
Probab=93.26 E-value=15 Score=40.24 Aligned_cols=188 Identities=8% Similarity=0.046 Sum_probs=94.2
Q ss_pred EEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 11 ~~fspdg~~lasg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
+.+||||++||.+.. ...|++-|+.+|..+...- .... ..+.|.+.+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------------------~~~~-~~~~w~~D~-------- 183 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------------------DNVE-PSFVWANDS-------- 183 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------------------cCcc-eEEEEeeCC--------
Confidence 378999999987643 2357888888775321100 0111 236776542
Q ss_pred CcEEEEEECC-----CeEEEEEccCCe--EEEEecCCCCCCEE-EEEEccCCCEEEEEe---CCCcEEEEeC--CCCcee
Q 008041 86 SSLLVLGTGG-----GDVLALAVSAGQ--LKWRLSDCHPGGVS-AISFATHGSCIYSAG---ADGMVCEIDP--LTGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~--~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~---~d~~v~iwd~--~~~~~~ 152 (579)
..++++.... ..|+.+++.++. -. .+..+...... ....+.++++++..+ .++.+.+++. ..+...
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF 262 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence 2333443322 358889998872 22 12222223333 333444888755443 3457888884 234432
Q ss_pred eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecC-C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~h-~-~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
..+....+....+. +..+.+++... ..|...++........+..+ . ..+..+.+. +++|+.....++.-+
T Consensus 263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~ 339 (686)
T PRK10115 263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS 339 (686)
T ss_pred EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence 22222222222222 33344444433 24544555522222334344 3 367777777 345555554677666
Q ss_pred EEEcC
Q 008041 226 LWRTD 230 (579)
Q Consensus 226 vwd~~ 230 (579)
++-+.
T Consensus 340 l~~~~ 344 (686)
T PRK10115 340 LRQIN 344 (686)
T ss_pred EEEEc
Confidence 65544
No 428
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.25 E-value=3.8 Score=33.67 Aligned_cols=108 Identities=16% Similarity=0.220 Sum_probs=69.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCC--------ceeeEeecCCCCeeEEEEcc-----CCCEEEEEC-CeEEEEECC
Q 008041 122 AISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 122 ~l~~~~~~~~l~s~~~d~~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p-----~g~~l~~~~-~~i~vwd~~ 187 (579)
.-.|......|++++.-|.|.+++.... ..+..+. -...|++++--| +...|+.|+ ..+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 3456555667888888899999986533 2333343 345777776544 456888888 899999998
Q ss_pred CCeeeEEeecCCCCEEEEEEec----CCCEEEEEecCCCeEEEEEcCCCc
Q 008041 188 DHKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 188 ~~~~~~~~~~h~~~v~~l~~s~----~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
...-+..- .-...|+++.+-. +...++++ .+..|.-||....+
T Consensus 82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivG--Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVG--GNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhh-hCccceeEEEEEecCCCCCcEEEEC--ceEEEEEeCCCCcE
Confidence 87654322 2346677776632 23445544 36777777766543
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.14 E-value=3.6 Score=41.22 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCEEEEEEccCCCEEEEEeCC-------------------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEE
Q 008041 118 GGVSAISFATHGSCIYSAGAD-------------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d-------------------~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~ 177 (579)
.....+.|.|||.+.++.+.. |.|.-+|...++. ..+...-.....++|+|+|+++++-
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 447889999999876554421 3344444433332 2222111234567777777666543
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.04 E-value=3.4 Score=44.98 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~ 146 (579)
.|..+.++|+|.+++..|..| |.+..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 578889999999988888766 444444
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.76 E-value=5.7 Score=39.84 Aligned_cols=100 Identities=14% Similarity=0.269 Sum_probs=60.3
Q ss_pred CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeeEeecCCCCeeEEEEccCCCEEEEECCeE
Q 008041 118 GGVSAISFATHGSCIYSAG-----------ADG-MVCEIDPLT--GS--LLGKFRASTKGISCMAVSSDGKMLATAAGQL 181 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~-----------~d~-~v~iwd~~~--~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i 181 (579)
....+++|.++|+.+++.. ..+ .|.+++-.+ |+ ....|...-.....+++.++| ++++....|
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4567889999998766642 223 777776543 33 233444444466889999998 655555666
Q ss_pred EEE-ECCC-------Ceee-EEeec----CCCCEEEEEEecCCCEEEEEe
Q 008041 182 KTF-NCSD-------HKKM-QKFSG----HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 182 ~vw-d~~~-------~~~~-~~~~~----h~~~v~~l~~s~~~~~l~s~~ 218 (579)
..| |... .+.+ ..+.. +......+.|.|||.+.++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 655 4432 1122 22322 134477899999998766655
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=4.2 Score=40.44 Aligned_cols=144 Identities=9% Similarity=0.126 Sum_probs=90.2
Q ss_pred EEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCCCC
Q 008041 88 LLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRASTKG 161 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~ 161 (579)
..+.+..+|.+.=|-+.. ......+.....++|.++.|++|.+.++.--.|+.|.+++....+. ..+.+.....
T Consensus 35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 345555556555555543 2233233334557999999999999999999999999999743322 1223333446
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCC
Q 008041 162 ISCMAVSSDGKMLATAAGQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~ 231 (579)
|....|+.+....+....-+.+|.+... +.++..+.|...|..-.|+++.+.++-+++ ..+++.=+.+++
T Consensus 115 IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 115 ILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred eEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 8889998764444444455666665432 345556778888999999998775544432 334444444443
No 433
>PLN02193 nitrile-specifier protein
Probab=92.43 E-value=15 Score=38.17 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=68.3
Q ss_pred CcEEEEEECC-------CeEEEEEccCCeEEEEecCC-CCC--CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008041 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~-h~~--~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~ 150 (579)
+.+++.|..+ ..+.+||+.+.+-......+ ... ........-++..++.|+.+ ..+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4555666542 24788888876643211111 001 11111112245556666654 358889987654
Q ss_pred eeeE--eec-CC-CCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEee-----cCCCCEEEEEEecCCCEE
Q 008041 151 LLGK--FRA-ST-KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 151 ~~~~--~~~-~~-~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l 214 (579)
-... ... .. ..-.+++. -++++++.|+ ..+..||+.+.+-...-. ..... ..+.. -+++.+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~gkiy 332 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQGKVW 332 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECCcEE
Confidence 2221 100 11 11122222 3566677665 247788887765321100 00111 11222 356666
Q ss_pred EEEecCC----CeEEEEEcCCCc
Q 008041 215 LSSAVGE----RYIALWRTDGVK 233 (579)
Q Consensus 215 ~s~~~~d----~~i~vwd~~~~~ 233 (579)
+.+| .+ ..+.+||+.+.+
T Consensus 333 viGG-~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 333 VVYG-FNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEEC-CCCCccCceEEEECCCCE
Confidence 6665 34 458889988765
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=2.4 Score=46.95 Aligned_cols=126 Identities=11% Similarity=-0.024 Sum_probs=78.5
Q ss_pred EEECCC-eEEEEEccCCeEE----EEec------CCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEeec
Q 008041 91 LGTGGG-DVLALAVSAGQLK----WRLS------DCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKFRA 157 (579)
Q Consensus 91 ~~~~~g-~i~iwd~~~~~~~----~~~~------~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~-~~~~~~~ 157 (579)
+-+.+| .|..||+.+-..- ...+ .....-+.++.|+|.-.. .+.+..|+.|++..+..-. .+..+.
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p- 196 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP- 196 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-
Confidence 333334 4899999753221 1111 112234567888885443 5667789989888765332 222232
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEe
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h----~~~v~~l~~s~~~~~l~s~~ 218 (579)
.....+|++|+|.|+.+++|. |++.-|-. +.+....+++. ...|.++.|-..-.++++-+
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 345789999999999999998 78877754 33333333221 36789999987766766543
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.17 E-value=0.46 Score=30.21 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.0
Q ss_pred CcccceEEEEccCC---CEEEEEeCCCcEEEEECCCC
Q 008041 4 SNIRDILTSFSPAL---DYFAICSGDARIKIWDTLKG 37 (579)
Q Consensus 4 ~~V~~l~~~fspdg---~~lasg~~dg~i~vwd~~~~ 37 (579)
++||++ .|||+. .+|+..-.-|.|.|+|++++
T Consensus 1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 467555 999854 58888777899999999854
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.85 E-value=0.48 Score=50.63 Aligned_cols=137 Identities=15% Similarity=0.183 Sum_probs=80.4
Q ss_pred CeEEEEEcc--CCeEEE----EecCCCCCCEEEEEE---ccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE-
Q 008041 96 GDVLALAVS--AGQLKW----RLSDCHPGGVSAISF---ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM- 165 (579)
Q Consensus 96 g~i~iwd~~--~~~~~~----~~~~~h~~~V~~l~~---~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l- 165 (579)
|...+|++. .|+... +....-...+.-+.| -++.-++..+-.++.+++.+..+... ..|.+|..++..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 667888876 344322 222222233344444 44666677777788888876543322 3455565544433
Q ss_pred ----------EEccCCCEEEEEC--C-----eEEEEECCCCeeeEEeecCC-CCEEEEEEecCC---------CEEEEEe
Q 008041 166 ----------AVSSDGKMLATAA--G-----QLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNG---------KYVLSSA 218 (579)
Q Consensus 166 ----------~~~p~g~~l~~~~--~-----~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~~~---------~~l~s~~ 218 (579)
.++|||+.++.+. | .|+|.+...-+++...+.|. .+-.|.-|+... .++++++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 3689999999876 5 45555555566677777776 443343344321 2456666
Q ss_pred cCCCeEEEEEcCCCc
Q 008041 219 VGERYIALWRTDGVK 233 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (579)
..++.+++|.....+
T Consensus 312 d~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQ 326 (1283)
T ss_pred cCCcceeEeeccchh
Confidence 566778999877665
No 437
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.85 E-value=15 Score=36.59 Aligned_cols=192 Identities=15% Similarity=0.262 Sum_probs=105.8
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC
Q 008041 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 15 pdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
|...+++....++=+.+||++ |+.++.+.........+.+.- +...+ ..-|++++.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf-----------------~l~g~------~vDlavas~ 121 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGF-----------------PLNGK------TVDLAVASD 121 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEE-----------------EETTE------EEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecce-----------------ecCCc------eEEEEEEec
Confidence 344567777778889999986 666565532110000111110 00100 111444443
Q ss_pred -C---CeEEEEEcc--CCeEEEEecC-C-----CCCCEEEEEEc--c-CCC-EEEEEeCCCcEEEEeCC---CC----ce
Q 008041 95 -G---GDVLALAVS--AGQLKWRLSD-C-----HPGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SL 151 (579)
Q Consensus 95 -~---g~i~iwd~~--~~~~~~~~~~-~-----h~~~V~~l~~~--~-~~~-~l~s~~~d~~v~iwd~~---~~----~~ 151 (579)
+ ..|++|.+. ++.+. .+.. . -...+.++|+. | +|. +++....+|.+..|-+. .+ +.
T Consensus 122 R~~g~n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 122 RSDGRNSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp -CCCT-EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred CcCCCCeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 2 358888775 44432 2211 1 11347788874 3 455 46667788988888764 33 45
Q ss_pred eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-----CeeeEEeec--CCCCEEEEEEec--CC-CEEEEEec
Q 008041 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAV 219 (579)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-----~~~~~~~~~--h~~~v~~l~~s~--~~-~~l~s~~~ 219 (579)
++.|.. ...+..+........|..+. .-|.-|+.+. ++.+....+ ....|-.|+... ++ .||++++.
T Consensus 201 VR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 201 VREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp EEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred EEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 777775 44788999998888888887 4566666652 233333322 346678887754 33 37888887
Q ss_pred CCCeEEEEEcCCC
Q 008041 220 GERYIALWRTDGV 232 (579)
Q Consensus 220 ~d~~i~vwd~~~~ 232 (579)
.+++..+|+....
T Consensus 280 G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 280 GDNSFAVYDREGP 292 (381)
T ss_dssp GGTEEEEEESSTT
T ss_pred CCCeEEEEecCCC
Confidence 8899999998764
No 438
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.77 E-value=14 Score=36.34 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~ 39 (579)
..|+|.|||++|++ ...|.|++++ ..+..
T Consensus 5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp EEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred eEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence 35699999987765 5599999999 55554
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.70 E-value=1.1 Score=41.12 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=23.6
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041 125 FATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 125 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 152 (579)
+..+++++++.+.+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 3457889999999999999999988664
No 440
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.62 E-value=1.7 Score=43.68 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=56.8
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC-eeEEEEccC-----------------CCEEEEEC--
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-ISCMAVSSD-----------------GKMLATAA-- 178 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~p~-----------------g~~l~~~~-- 178 (579)
.+.++..+|++++.++...-|+|.++|+.++..++.+++..+. +.=+..... ..+|+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 4788999999998888888899999999999999998876552 111111111 11233322
Q ss_pred -CeEEEEECCCCeeeEEeec
Q 008041 179 -GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 179 -~~i~vwd~~~~~~~~~~~~ 197 (579)
|.|.||.+++|..+..+..
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCeEEEEecCCCCEEEEEEe
Confidence 8999999999988877653
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.53 E-value=3.2 Score=41.80 Aligned_cols=141 Identities=18% Similarity=0.281 Sum_probs=88.1
Q ss_pred CcEEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEeCCC-CceeeE--
Q 008041 86 SSLLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLT-GSLLGK-- 154 (579)
Q Consensus 86 ~~~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~~~d~~v~iwd~~~-~~~~~~-- 154 (579)
.++|+. |..-..++-.|+..|+.+.... -|... -+.|.|+.+ .-+.|-++..|.-.|.+- |..+..
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~-~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWD-LKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEee-cCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 334433 4444568889999999886663 35443 566777432 234455677777777653 322222
Q ss_pred eec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 155 FRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 155 ~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
++. ......|..-..+| ++|+++ |.|++||--..+...-+++-...|..+..+.+|+++++.| ..++-+-|+.
T Consensus 556 sKdY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ehhccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 111 12234444444444 777777 9999999543333344577778899999999999998886 5678888876
Q ss_pred CC
Q 008041 231 GV 232 (579)
Q Consensus 231 ~~ 232 (579)
-.
T Consensus 633 ik 634 (776)
T COG5167 633 IK 634 (776)
T ss_pred cc
Confidence 43
No 442
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.51 E-value=2.1 Score=39.66 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=73.5
Q ss_pred EEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCC-C-ee-eEEee---cCCCCEEEEEEecC
Q 008041 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSD-H-KK-MQKFS---GHPGAVRFMTFSDN 210 (579)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~-~-~~-~~~~~---~h~~~v~~l~~s~~ 210 (579)
.+||+.+++....-....-.+.+-.+.|||+++.+|+ ..+++++..+ . .+ ..... .....--+...-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 4788887754332211222444556789999999988 3688888654 1 11 11110 01112223444579
Q ss_pred CCEEEEEecCCCeEEEEEcCCCcccccee-eee-e--ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 211 GKYVLSSAVGERYIALWRTDGVKKQSASC-VLA-M--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 211 ~~~l~s~~~~d~~i~vwd~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
|+.|+.+|...-+...|............ ... . .......-.++.- |+|+.++.+..++ .|||..+.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCCc--EEEeCCCCeE
Confidence 99999988644445555542221110000 000 0 0111222233333 8999998887654 4567777655
Q ss_pred eccc
Q 008041 287 LRNT 290 (579)
Q Consensus 287 ~~~~ 290 (579)
++.+
T Consensus 202 ~~~l 205 (243)
T PF07250_consen 202 VRTL 205 (243)
T ss_pred EeeC
Confidence 4443
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.45 E-value=15 Score=36.00 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce---eeEeecCCCCe--eEEEEccCCCEEEEEC-------CeEEEEECCCCe
Q 008041 128 HGSCIYSAGAD-----GMVCEIDPLTGSL---LGKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (579)
Q Consensus 128 ~~~~l~s~~~d-----~~v~iwd~~~~~~---~~~~~~~~~~v--~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~ 190 (579)
++..++.|+.+ ..+..+|+.+.+- ...+..-..+. .+++. -++++++.|+ ..+..||..+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55566666654 3577778766542 11221111111 12222 2567777766 368889988764
Q ss_pred ee--EEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCc
Q 008041 191 KM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK 233 (579)
Q Consensus 191 ~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~ 233 (579)
-. ..+... ..........+++..+.+| .++ .+.+||+.+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence 32 222211 1112222334566666665 343 25678887764
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.37 E-value=6.5 Score=42.22 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=64.5
Q ss_pred CcEEEEEECCCeEEEEEccC-------C----eE-E------EEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEe
Q 008041 86 SSLLVLGTGGGDVLALAVSA-------G----QL-K------WRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID 145 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~-------~----~~-~------~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~v~iwd 145 (579)
...|++|..||.|.+|.+.+ . +. . ..+.......+++++++ ...++|++++....|.+|-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 67899999999999997742 1 00 0 01111234578999998 7777888888778888875
Q ss_pred CCCC--ce-eeEeecCCCCeeEEEEccCC-----C-EEEEEC--CeEEEEEC
Q 008041 146 PLTG--SL-LGKFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC 186 (579)
Q Consensus 146 ~~~~--~~-~~~~~~~~~~v~~l~~~p~g-----~-~l~~~~--~~i~vwd~ 186 (579)
+... +. ...-..+..-|-+|+|-++. . .+++++ |.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4431 11 11111245578889987643 2 566666 88888776
No 445
>PLN02153 epithiospecifier protein
Probab=90.77 E-value=18 Score=35.74 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=50.7
Q ss_pred CcEEEEEECC-------CeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCC
Q 008041 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~ 148 (579)
+.++++|+.+ ..+.+||+.+.+-......+... ....+.+ +++.++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4555656542 35889998887643211111100 1222232 45566666643 3578889876
Q ss_pred Ccee--eEeec---CCCCeeEEEEccCCCEEEEEC-C------------eEEEEECCCCee
Q 008041 149 GSLL--GKFRA---STKGISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKK 191 (579)
Q Consensus 149 ~~~~--~~~~~---~~~~v~~l~~~p~g~~l~~~~-~------------~i~vwd~~~~~~ 191 (579)
.+-. ..+.. ........+..-++++++.|+ . .+.+||..+.+-
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 5322 11110 111111122223566777666 1 367888877643
No 446
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.27 E-value=18 Score=34.79 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=79.9
Q ss_pred eEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCC-----CEEEEE-eCCCcEEEEeCCCCceeeEeecC-------
Q 008041 97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSA-GADGMVCEIDPLTGSLLGKFRAS------- 158 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~-----~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~------- 158 (579)
+|.+||+.+++.+.++.-. ..+....+.+.... .+++.+ +..+-+.++|+.+++..+....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5788999998876655311 24567888886622 243333 34467999999988765443321
Q ss_pred ------------CCCeeEEEEcc---CCCEEEEEC-CeEEEEECCCC--------------eeeEEeecCCCCEEEEEEe
Q 008041 159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSDH--------------KKMQKFSGHPGAVRFMTFS 208 (579)
Q Consensus 159 ------------~~~v~~l~~~p---~g~~l~~~~-~~i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~s 208 (579)
...+..++.+| +|+.|.-.. ..-++|.+.+. +.+..+....+....++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12366677765 666776665 44444444321 1122222112466778999
Q ss_pred cCCCEEEEEecCCCeEEEEEcCCC
Q 008041 209 DNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 209 ~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
++|..+++-- ..+.|..|+..+.
T Consensus 195 ~~G~ly~~~~-~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 195 PNGNLYFTDV-EQNAIGCWDPDGP 217 (287)
T ss_dssp TTTEEEEEEC-CCTEEEEEETTTS
T ss_pred CCCcEEEecC-CCCeEEEEeCCCC
Confidence 9988777665 7889999998874
No 447
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.18 E-value=16 Score=34.09 Aligned_cols=133 Identities=12% Similarity=0.152 Sum_probs=77.0
Q ss_pred eEEEEEccCCeEEE-EecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCE
Q 008041 97 DVLALAVSAGQLKW-RLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKM 173 (579)
Q Consensus 97 ~i~iwd~~~~~~~~-~~~~~h-~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~ 173 (579)
.|.-.|.++.+... .+...| ........|.+.|+.-+++. .|.-=-.|.. ...+.+|....+ ..+.|+..|||..
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv 202 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV 202 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCcE
Confidence 45555665555432 111222 35678889999998877774 2221112221 223444544433 6688999999998
Q ss_pred EEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 174 LATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 174 l~~~~--~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
-++.- +.|-..|..++. -..+. .....-..+--+|.|+.-++.. ..+.+..+|.....
T Consensus 203 wyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~s 265 (353)
T COG4257 203 WYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTS 265 (353)
T ss_pred EEEeccccceEEcccccCC-cceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccccc
Confidence 87744 677777766652 11221 2123344555667787766654 57788888877654
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.04 E-value=18 Score=34.44 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=76.8
Q ss_pred EEEEEeCCCcEEEEeCCCCce-----eeEeecC-CC-CeeEEEEc--cCCCEEEEEC---CeEEEEECCCCeeeE--Eee
Q 008041 131 CIYSAGADGMVCEIDPLTGSL-----LGKFRAS-TK-GISCMAVS--SDGKMLATAA---GQLKTFNCSDHKKMQ--KFS 196 (579)
Q Consensus 131 ~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~-~~-~v~~l~~~--p~g~~l~~~~---~~i~vwd~~~~~~~~--~~~ 196 (579)
.|+.+++||+|.-|...-+.. +..+... .+ -...+++. ..+.+|..+. ++|.+||-.-.+... .|.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367888999999998543222 1222211 12 23345554 3467888887 899999864332210 011
Q ss_pred -----cCCCC--E---------EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC---ceeEEeEEecC
Q 008041 197 -----GHPGA--V---------RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDN 257 (579)
Q Consensus 197 -----~h~~~--v---------~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 257 (579)
....+ | +-..-.++++.=+.+. .-|.|.+||+...-.. .+.+. ...+. +...+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~~------r~as~g~LNaPWG-~a~AP 253 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLLR------RVASSGRLNAPWG-LAIAP 253 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEEE------EeccCCcccCCce-eeeCh
Confidence 11111 1 1111122222222222 4578999998775322 22211 11111 11111
Q ss_pred Ccc-cCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 258 GGV-DDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 258 ~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+ ...+..|+---.||+|..||..+++.+..+.
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 111 1345555555559999999999988765443
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=89.98 E-value=21 Score=35.20 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008041 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~ 190 (579)
-...++++.+.++++.++.+ ..|.+++=....|..-.....+ ...+..+.+.|++..++++. |.+. .....++
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 34578999999998876654 5676654333444432222211 23578899999988888877 6554 3445554
Q ss_pred eeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 191 KMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 191 ~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
.-.... .-......+.|..+++.++++ ..|.|-.|+-
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~~ 330 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYVG 330 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEecC
Confidence 433332 222457788888777776654 5788877764
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=8.6 Score=39.05 Aligned_cols=94 Identities=11% Similarity=0.198 Sum_probs=52.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH 198 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h 198 (579)
.|..+..++.|..++-++.+|.+.++=.+..-.-..++..+..|+|=.+.-+.+++ +.+ .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-tss-------------------~ 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-TSS-------------------T 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-ccC-------------------C
Confidence 46777888999998888889966655433333333344333344444443222111 111 1
Q ss_pred CCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCc
Q 008041 199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 199 ~~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.-.+...+|+|++ ..|+.-. .|..|++||+....
T Consensus 165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT 201 (741)
T ss_pred ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence 1224456676654 3444444 48888888887654
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.88 E-value=24 Score=35.67 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=74.8
Q ss_pred EEEEEccCCCEEEEEeCCCcEE-EEeCCCCcee-eE-eecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe-----e
Q 008041 121 SAISFATHGSCIYSAGADGMVC-EIDPLTGSLL-GK-FRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----K 191 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~d~~v~-iwd~~~~~~~-~~-~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~-----~ 191 (579)
..+..+++|.+++.+ ..|.+. -|| .|... .. -......++++.+.+++.+++++. |.+. +....++ .
T Consensus 242 ~~v~~~~dG~~~~vg-~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVS-SRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEE-CCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence 344556777666555 344433 344 23321 11 122344789999999999998888 5543 3444443 2
Q ss_pred eEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE
Q 008041 192 MQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 192 ~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (579)
...... ....+..+.|.+++..++++ .+|.+.... ..++.- ............+..+.|. ++ ....+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s~-D~G~tW--~~~~~~~~~~~~ly~v~f~-----~~-~~g~~ 386 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRST-DGGKSW--KRDKGADNIAANLYSVKFF-----DD-KKGFV 386 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEeC-CCCcce--eEccccCCCCcceeEEEEc-----CC-CceEE
Confidence 222221 12358889999888766654 577665543 333321 0111001111223344443 33 44555
Q ss_pred EEcCCeEEEE
Q 008041 270 ISETGVCYIW 279 (579)
Q Consensus 270 ~~~dg~i~iw 279 (579)
.+.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 6677887655
No 452
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.82 E-value=1.7 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=25.4
Q ss_pred CCEEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 008041 118 GGVSAISFATHG---SCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 118 ~~V~~l~~~~~~---~~l~s~~~d~~v~iwd~~~ 148 (579)
+.|.++.|+|++ ..|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4777777889999999985
No 453
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.41 E-value=21 Score=38.08 Aligned_cols=169 Identities=10% Similarity=0.159 Sum_probs=88.4
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.| +.+.|.++++.++.....|.|.+||...+.... ..+... -....|+ . -+.++...
T Consensus 130 ~kv--v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~--~~~v~ys-~-----------fv~~~~~~---- 189 (670)
T PF10395_consen 130 DKV--VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS--SINVSYS-K-----------FVNDFELE---- 189 (670)
T ss_pred cce--EEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc--ccceehh-h-----------hhcccccc----
Confidence 455 667999999999999999999999994333221 111100 0011111 0 01111100
Q ss_pred cccCCcEEEEEEC-CCe---EEEEEc--cCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008041 82 RKLGSSLLVLGTG-GGD---VLALAV--SAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 82 ~~~~~~~l~~~~~-~g~---i~iwd~--~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 153 (579)
.+..++++.+. .+. .+++.+ ...... .+. .-+........|..+...++-= .+++|.+|++...+...
T Consensus 190 --~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 190 --NGKDLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK 265 (670)
T ss_pred --cCCceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Confidence 01344444443 332 777777 222221 221 1122223333343333333333 78899999998877666
Q ss_pred EeecC-----C-CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee
Q 008041 154 KFRAS-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS 196 (579)
Q Consensus 154 ~~~~~-----~-~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~ 196 (579)
++.-. . ..+.++.--...+.+++..+.|++.|+.-...+.++.
T Consensus 266 tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 64432 1 2344444333456677777999999987655554443
No 454
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.09 E-value=1.9 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred ecCCCCEEEEEEecCCCEEEEEecCC--CeEEEE
Q 008041 196 SGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW 227 (579)
Q Consensus 196 ~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vw 227 (579)
......-....|+|||++|+.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455677889999999988887666 666655
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=7.6 Score=41.26 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=56.0
Q ss_pred CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCC
Q 008041 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (579)
Q Consensus 179 ~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (579)
-.|+||+. +|+.+.++....+.+-.+.|+.+...++. . .||++.+|++........ .+..-.....+..|..|.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~-k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~-- 137 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-Q-KDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFH-- 137 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-e-ccceEEEeecchhhhccc-ccccccccCceeEEEEec--
Confidence 56888886 56666666555558889999988776655 4 799999999887654321 111111233455666663
Q ss_pred cccCCCcEEEEEEcCCeEEEEE
Q 008041 259 GVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd 280 (579)
+| +++-..+|++.+-+
T Consensus 138 ----~G--Vavlt~~g~v~~i~ 153 (829)
T KOG2280|consen 138 ----NG--VAVLTVSGQVILIN 153 (829)
T ss_pred ----Cc--eEEEecCCcEEEEc
Confidence 44 44445566655543
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=7.7 Score=43.96 Aligned_cols=145 Identities=14% Similarity=0.238 Sum_probs=81.4
Q ss_pred eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEc
Q 008041 24 SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAV 103 (579)
Q Consensus 24 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~ 103 (579)
+.|+.+.+|+..++.....+.+....+..+..-.+ ..|-+...+ .++++-+.--.|.++-+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I------------------qhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI------------------QHLLVVATPVEIVILGV 156 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh------------------heeEEecccceEEEEEE
Confidence 45889999999998877777776665554433222 112221111 22333333344444443
Q ss_pred cCCeEE--EEecC------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCC---c-e----------------ee
Q 008041 104 SAGQLK--WRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTG---S-L----------------LG 153 (579)
Q Consensus 104 ~~~~~~--~~~~~------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~--~~~---~-~----------------~~ 153 (579)
.-.+.. ...+. -....|+|+....+|+.|++| .||.|+-.-. .+| + + +-
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 321110 00111 123468899977888877665 6665543221 111 1 1 11
Q ss_pred Eee-cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008041 154 KFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (579)
Q Consensus 154 ~~~-~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~ 188 (579)
.+. .+..+|..+++...-+++.+-+ |+|.+||+..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 122 3466999999998777777766 8999999976
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.41 E-value=3 Score=38.19 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEe------cC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
+.++++-+.+|.+++||+.+++.+... +. .....|..+.++.+|.-+++- .+|..+.||..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 778999999999999999998875322 12 244567777777777655554 34667777643
No 458
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.37 E-value=27 Score=34.36 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=48.6
Q ss_pred EEEEECCCeEEEEEccCCeE---EEEe---cCCCCCCEEEEEEccC---CCEEEEEeCC---------CcEEEEeCCCC-
Q 008041 89 LVLGTGGGDVLALAVSAGQL---KWRL---SDCHPGGVSAISFATH---GSCIYSAGAD---------GMVCEIDPLTG- 149 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~---~~~~---~~~h~~~V~~l~~~~~---~~~l~s~~~d---------~~v~iwd~~~~- 149 (579)
++++...|.|++++ ..+.. +... .........+++|+|+ ..+|+..... ..|.-|....+
T Consensus 15 l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~ 93 (331)
T PF07995_consen 15 LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGD 93 (331)
T ss_dssp EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTS
T ss_pred EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCc
Confidence 56678899999999 44433 2222 2234457899999994 3455444331 24544544333
Q ss_pred ------cee-eEeec---CCCCeeEEEEccCCCEEEEEC
Q 008041 150 ------SLL-GKFRA---STKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 150 ------~~~-~~~~~---~~~~v~~l~~~p~g~~l~~~~ 178 (579)
+.+ ..+.. ....-..|.|.|||.++++.+
T Consensus 94 ~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 94 GDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp CEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred cccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 111 11222 223557799999998777754
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.01 E-value=7.6 Score=41.43 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=46.3
Q ss_pred CcEEEEEECCCeEEEEEccC----CeEEEEe-cCC--------------------CCCCEEEEEEcc----CCCEEEEEe
Q 008041 86 SSLLVLGTGGGDVLALAVSA----GQLKWRL-SDC--------------------HPGGVSAISFAT----HGSCIYSAG 136 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~----~~~~~~~-~~~--------------------h~~~V~~l~~~~----~~~~l~s~~ 136 (579)
...++++..||.+....... +...... ... ....+.++++++ +..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 66788889999988777664 2211111 111 123456666666 677899999
Q ss_pred CCCcEEEEeCCCCceeeEeecC
Q 008041 137 ADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 137 ~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
.|+++|+||+.+++++.+..-.
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999998776543
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.58 E-value=28 Score=33.50 Aligned_cols=191 Identities=9% Similarity=0.122 Sum_probs=93.5
Q ss_pred eEEEEccCCCEEE--EEeC----------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeec
Q 008041 9 ILTSFSPALDYFA--ICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 9 l~~~fspdg~~la--sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
..+...++|++-+ +|.. .-+|.+||+.+++.++++.-+........+ ...+.....
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~------------lndl~VD~~ 71 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSF------------LNDLVVDVR 71 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGG------------EEEEEEECT
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccc------------cceEEEEcc
Confidence 3446677776433 3321 127889999999998887643322211111 111111111
Q ss_pred ccccccccCCcEEEEEECC-CeEEEEEccCCeEEEEecCCC-------------------CCCEEEEEEcc---CCCEEE
Q 008041 77 DRKKKRKLGSSLLVLGTGG-GDVLALAVSAGQLKWRLSDCH-------------------PGGVSAISFAT---HGSCIY 133 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h-------------------~~~V~~l~~~~---~~~~l~ 133 (579)
+.. .+..+++++... +.|.|+|+.+++.-... ..+ .+.+.+++.+| +|+.|+
T Consensus 72 ~~~----~~~~~aYItD~~~~glIV~dl~~~~s~Rv~-~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LY 146 (287)
T PF03022_consen 72 DGN----CDDGFAYITDSGGPGLIVYDLATGKSWRVL-HNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLY 146 (287)
T ss_dssp TTT----S-SEEEEEEETTTCEEEEEETTTTEEEEEE-TCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEE
T ss_pred CCC----CcceEEEEeCCCcCcEEEEEccCCcEEEEe-cCCcceeccccceeccCceEecCCCccccccCCCCCCccEEE
Confidence 100 002445555554 45999999988764222 111 12366666655 666666
Q ss_pred EEeCCC-cEEEEeC---CCC---------ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---eeeEEe
Q 008041 134 SAGADG-MVCEIDP---LTG---------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKF 195 (579)
Q Consensus 134 s~~~d~-~v~iwd~---~~~---------~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~---~~~~~~ 195 (579)
.+...+ .++--.. ++. +.+..+-........++++++|.++.+-- +.|..|+..+. +....+
T Consensus 147 f~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l 226 (287)
T PF03022_consen 147 FHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEIL 226 (287)
T ss_dssp EEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEE
T ss_pred EEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchhee
Confidence 665433 2322221 111 11222211123567788999998887766 89999998862 112222
Q ss_pred e--cC-CCCEEEEEEec--CCCEEEE
Q 008041 196 S--GH-PGAVRFMTFSD--NGKYVLS 216 (579)
Q Consensus 196 ~--~h-~~~v~~l~~s~--~~~~l~s 216 (579)
. .. -..+..+.+.+ +|...+.
T Consensus 227 ~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 227 AQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp EE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred EEcCceeeccceeeeccccCceEEEE
Confidence 1 11 34677888887 6654444
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.93 E-value=39 Score=37.71 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=74.0
Q ss_pred CCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-----eeeEeecCC----------CCeeEEEEccCCCEEEEEC-Ce
Q 008041 118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAST----------KGISCMAVSSDGKMLATAA-GQ 180 (579)
Q Consensus 118 ~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~----------~~v~~l~~~p~g~~l~~~~-~~ 180 (579)
.+..+++|+| +.+.|+.....|.-.+||+..+. .......+. ..-..+.|.++-+.|++++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4678999999 44579999999999999992111 111111111 1234788988888888888 89
Q ss_pred EEEEECCCCeeeEEe--ecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCC
Q 008041 181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 181 i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~--~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
+.++|+++......+ ......|..+.-+|. +..|+-+ ...|...++...
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence 999999987553212 234467888888876 3333332 356777787763
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.37 E-value=40 Score=34.11 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----eeeEeec--CCCCeeEEEEccCCCEEEEEC-CeEEEEECC
Q 008041 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-----LLGKFRA--STKGISCMAVSSDGKMLATAA-GQLKTFNCS 187 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~--~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~ 187 (579)
....++++.|.+++..++++ .+|.+.. ....++ ....... ....+..+.+.+++..+++|. |.+... ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence 34568899999998877655 6666543 334443 2222221 123588999999999999998 666555 34
Q ss_pred CCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 188 ~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
.|+.-.... .-......+.|.++++-++++ .+|.|--|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence 554433322 224567899998877776664 57877654
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.36 E-value=61 Score=36.22 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=76.6
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCC----------CCEEEEEEccCCC
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHP----------GGVSAISFATHGS 130 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~----------~~V~~l~~~~~~~ 130 (579)
+.+...++++|.+ ...+|+....|...||++..+ .........+. +.-..+.|.++-+
T Consensus 145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence 3456667777766 558999999999999999211 11111111122 2334788988888
Q ss_pred EEEEEeCCCcEEEEeCCCCceee-Eee-cCCCCeeEEEEccC--CCEEEEECCeEEEEECCC
Q 008041 131 CIYSAGADGMVCEIDPLTGSLLG-KFR-ASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD 188 (579)
Q Consensus 131 ~l~s~~~d~~v~iwd~~~~~~~~-~~~-~~~~~v~~l~~~p~--g~~l~~~~~~i~vwd~~~ 188 (579)
.|+.++ ...+.++|+.+..... ... .....|..+.-+|+ +..++..+..|...++..
T Consensus 217 ~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 217 RLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 888875 4568899998776533 222 23357888888887 566666668888888876
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.33 E-value=4.8 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=27.9
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 127 THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 127 ~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
|++++++++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5777766655 5789999999888888777653 33344544
No 465
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.21 E-value=59 Score=35.01 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=73.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~ 160 (579)
..-++....+|.+++|++....... .-.......|..+.|..+|-.+++ .+|++.+-+-......++++. ..-
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~ 171 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNEL 171 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccC
Confidence 4558889999999999987543321 111222334666666656644444 455565544222212223322 111
Q ss_pred CeeEEEEccCCC---EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 161 GISCMAVSSDGK---MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~---~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
+.+|-...+++. .++-.. -.+..-+....+ ...+....+.+..+..||+.++|+--. .+|.|.+-+.+..+
T Consensus 172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ 249 (829)
T ss_pred CCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence 222333333321 121111 111111211222 122222245678899999999988876 68888888777655
Q ss_pred c
Q 008041 234 K 234 (579)
Q Consensus 234 ~ 234 (579)
.
T Consensus 250 ~ 250 (829)
T KOG2280|consen 250 I 250 (829)
T ss_pred h
Confidence 3
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.17 E-value=33 Score=39.25 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKG 37 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~ 37 (579)
..++|+|...++|.|..+|.|+++-...-
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccce
Confidence 34599999999999999999999875433
No 467
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=84.65 E-value=47 Score=33.41 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=9.5
Q ss_pred eEEEEEccCCeEE
Q 008041 97 DVLALAVSAGQLK 109 (579)
Q Consensus 97 ~i~iwd~~~~~~~ 109 (579)
.+..||+.+++..
T Consensus 107 ~v~~YD~~~n~W~ 119 (376)
T PRK14131 107 DVYKYDPKTNSWQ 119 (376)
T ss_pred cEEEEeCCCCEEE
Confidence 4888998877643
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.63 E-value=3.8 Score=40.61 Aligned_cols=198 Identities=12% Similarity=0.201 Sum_probs=99.3
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE----EEEecCCCCCCEEEEEEccCCC--------EEEEE
Q 008041 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGS--------CIYSA 135 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~~~~~~--------~l~s~ 135 (579)
...+.|....+. ...++.|..+|.+.+....-... -+.+..+ -.-++..++|+ ..+..
T Consensus 115 ~ppv~wa~~~~g------qp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g----~~p~aLd~qgr~leh~~~~lalA~ 184 (733)
T COG4590 115 FPPVLWAQTPPG------QPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPG----LEPLALDEQGRLLEHPLQQLALAL 184 (733)
T ss_pred CCCcccccCCCC------CceEEEeccCCeEEEEeccccccCCCCCccCCCC----CCccccCcccCcccchHHHhhhcc
Confidence 345667655443 67899999999999887642211 0011111 11112222222 22333
Q ss_pred eCCCcEEEEeCC------------CCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee-eEEee-cCCC
Q 008041 136 GADGMVCEIDPL------------TGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK-MQKFS-GHPG 200 (579)
Q Consensus 136 ~~d~~v~iwd~~------------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~-~~~~~-~h~~ 200 (579)
+.+.....+|.. .++.+..+......+..+-..|||+.+..-+ .++.++++.+... .+++- ...+
T Consensus 185 ~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg 264 (733)
T COG4590 185 TAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG 264 (733)
T ss_pred chhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC
Confidence 334433344332 1233333444556788889999999988877 6888888765432 11221 1111
Q ss_pred ----CEE-EEEEecCCCEEEEEecCCCeEEEE-EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 201 ----AVR-FMTFSDNGKYVLSSAVGERYIALW-RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 201 ----~v~-~l~~s~~~~~l~s~~~~d~~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
.|+ ++..-..|..++... .||.|..| |.+.+.......+....-....+....-. .+.+-+++-+.+|
T Consensus 265 ~~~~~Vte~l~lL~Gg~SLLv~~-~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-----~~rkgF~~l~~~G 338 (733)
T COG4590 265 DSRHQVTEQLYLLSGGFSLLVVH-EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-----TNRKGFYSLYRNG 338 (733)
T ss_pred chHHHHHHHHHHHhCceeEEEEc-CCCceeeeeeeecCCCCcceeeeccccCcccceeeccc-----cccceEEEEcCCC
Confidence 122 112223455566665 79999888 55544333222222222222222222221 2345566667777
Q ss_pred eEEEEEc
Q 008041 275 VCYIWYG 281 (579)
Q Consensus 275 ~i~iwd~ 281 (579)
++.+|..
T Consensus 339 ~L~~f~s 345 (733)
T COG4590 339 TLQSFYS 345 (733)
T ss_pred ceeeeec
Confidence 7777653
No 469
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.35 E-value=0.19 Score=49.82 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=93.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
+...|-|.+.-++.++.+..+..||-. |+...+... ....-.++|... +...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~-------------------tg~aldm~wDke--------gdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP-------------------TGKALDMAWDKE--------GDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC-------------------chhHhhhhhccc--------cchh
Confidence 445788887778888888888889854 444332221 112223445441 1455
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
++.+-..+.+++||+.+.... ++..+-+..-.=+.|++.+..++.+...|.+.+++..+.+.+-..-.|...++++++.
T Consensus 90 avlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 677888899999999875432 1111112222226788888888888889999999987776655555588899999999
Q ss_pred cCCCEEEEEC
Q 008041 169 SDGKMLATAA 178 (579)
Q Consensus 169 p~g~~l~~~~ 178 (579)
+.+..+..+.
T Consensus 169 lEd~vil~dc 178 (615)
T KOG2247|consen 169 LEDYVILCDC 178 (615)
T ss_pred ccceeeecCc
Confidence 9886665544
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.04 E-value=32 Score=31.02 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=63.7
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCeeEEEEccCCCEEEEEC-----C---eEEEE-ECCC----CeeeE-
Q 008041 130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF-NCSD----HKKMQ- 193 (579)
Q Consensus 130 ~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~---~i~vw-d~~~----~~~~~- 193 (579)
..++.+...+.|.+|++. ..+....|.. -+.|..+.++..|+++++-- . .+++| +.+. .+.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 445444667789999988 3345556664 37899999999999999864 3 56665 2221 12221
Q ss_pred EeecC---------------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 194 ~~~~h---------------------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.+-|| ..++.+++..|...-|+.++ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 12222 23466777777544455554 6789999886653
No 471
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.03 E-value=45 Score=36.19 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-------C-------------ceeeEeecCCCCeeEEEEc--cCCCEEEEEC--CeEEE
Q 008041 128 HGSCIYSAGADGMVCEIDPLT-------G-------------SLLGKFRASTKGISCMAVS--SDGKMLATAA--GQLKT 183 (579)
Q Consensus 128 ~~~~l~s~~~d~~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~~--p~g~~l~~~~--~~i~v 183 (579)
+...|+.|.+||.|.+|.+++ . ++...+. -...+..++++ ...+++|+++ ..|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 445688999999999996521 1 0112222 23478899998 7888888888 45555
Q ss_pred E--ECCCCee-eEEeecCCCCEEEEEEecCC-----C-EEEEEecCCCeEEEEEc
Q 008041 184 F--NCSDHKK-MQKFSGHPGAVRFMTFSDNG-----K-YVLSSAVGERYIALWRT 229 (579)
Q Consensus 184 w--d~~~~~~-~~~~~~h~~~v~~l~~s~~~-----~-~l~s~~~~d~~i~vwd~ 229 (579)
| .+...+. ...-..|...|-+|.|-++. . .+++++ -.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence 5 4422221 11112356778899997653 2 455554 7899998887
No 472
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=83.59 E-value=88 Score=35.74 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=79.5
Q ss_pred CcEEEEEEC---------CCeEEEEEccC-----C------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008041 86 SSLLVLGTG---------GGDVLALAVSA-----G------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (579)
Q Consensus 86 ~~~l~~~~~---------~g~i~iwd~~~-----~------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd 145 (579)
..++++|+. .|.++|||+-. | +....+.++..++|..++ .-+|. |+++ ....|.+|+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G~-l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRGH-LLSS-QGQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-EeccE-EEEc-cCcEEEEEE
Confidence 578888884 47799999743 2 122223345667787776 34564 5454 345699999
Q ss_pred C-CCCceeeE-eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeec--CCCCEEEEEEecCCC--EEEE
Q 008041 146 P-LTGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSG--HPGAVRFMTFSDNGK--YVLS 216 (579)
Q Consensus 146 ~-~~~~~~~~-~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~--h~~~v~~l~~s~~~~--~l~s 216 (579)
+ +....+.. |- .-++.-....-=.++++.|+ ..|.+.-.+. ...+.-+.. ..-.+.++.|--||. ++++
T Consensus 1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 8 44444332 22 12222223333356777777 5555544433 222322221 123577888877765 4444
Q ss_pred EecCCCeEEEEEcCCCc
Q 008041 217 SAVGERYIALWRTDGVK 233 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~ 233 (579)
+ +.|++|++|-.....
T Consensus 1201 s-Da~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1201 S-DADRNIHVYMYAPEN 1216 (1366)
T ss_pred E-cCCCcEEEEEeCCCC
Confidence 4 578999888765543
No 473
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.52 E-value=5.6 Score=24.88 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=23.3
Q ss_pred cCCCEEEEEC---CeEEEEECCCCeeeEEeec
Q 008041 169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 169 p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~ 197 (579)
|+++.++++. ++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6778777765 7999999999888877765
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.26 E-value=44 Score=31.95 Aligned_cols=117 Identities=9% Similarity=0.147 Sum_probs=66.2
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECC------CC-eeeEEeec-----CCCCEEEEEEecCCCE------------EE
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCS------DH-KKMQKFSG-----HPGAVRFMTFSDNGKY------------VL 215 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~------~~-~~~~~~~~-----h~~~v~~l~~s~~~~~------------l~ 215 (579)
-..|+++|.+.+-++.. +...+||.. .. ..+-+++. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 36789999886655544 789999986 12 22334432 1245677777643322 34
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 282 (579)
.++ +||+|.-|...-............. ....+...+++... ..+.+|.++.. .|+|.+||-.
T Consensus 105 f~t-EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~---~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVT-EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPT---GGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEe-CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeec---CCCceEEEeccCCCceEEecCc
Confidence 455 7999999996544321000111222 22344444554311 33566766654 7899999843
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.49 E-value=24 Score=35.37 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=88.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccC-ccccccccccccccccccccccceEEeeecccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++|..+ -..|||+.|..-+. ..+.|+++.+.....+ +... .+.+. | .++. ...
T Consensus 221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~-----------~---~Vte--------~l~ 275 (733)
T COG4590 221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR-----------H---QVTE--------QLY 275 (733)
T ss_pred cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH-----------H---HHHH--------HHH
Confidence 345444 67899998776554 5788998875543221 1100 00000 0 0000 000
Q ss_pred cccCCcEEEEEECCCeEEEE-EccCCeEE--E--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 82 RKLGSSLLVLGTGGGDVLAL-AVSAGQLK--W--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iw-d~~~~~~~--~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
--.++..+++++.||-|.-| |+..+... . +..+-...++..+.-..+.+.|++-+.+|++..+.-...+.+- +.
T Consensus 276 lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~ 354 (733)
T COG4590 276 LLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FE 354 (733)
T ss_pred HHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hh
Confidence 00125568888889887665 55443221 0 0001111233333322344557888888888887754443332 22
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee
Q 008041 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK 191 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~ 191 (579)
.--..+.-+++||.+.++++-. |.|+++.+++..+
T Consensus 355 ~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 355 RAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 2223667799999999999988 8999998876543
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.24 E-value=31 Score=32.05 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=62.9
Q ss_pred CcEEEEEECC-C--eEEEEEccC--CeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCC-C-ceeeE
Q 008041 86 SSLLVLGTGG-G--DVLALAVSA--GQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGM-VCEIDPLT-G-SLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~-g--~i~iwd~~~--~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~d~~-v~iwd~~~-~-~~~~~ 154 (579)
++++.+|+.. | .+++++... +.+.+.-.. ...-.=-+..--|||+.|+.|+.+.- ...|.-.. . .....
T Consensus 78 G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~ 157 (243)
T PF07250_consen 78 GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTL 157 (243)
T ss_pred CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceee
Confidence 6777776542 3 388888765 111111000 00001112334579999888887653 34444321 1 11111
Q ss_pred -eec------CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCC
Q 008041 155 -FRA------STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPG 200 (579)
Q Consensus 155 -~~~------~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~ 200 (579)
+.. ...-.-.+...|+|++++.+...-.+||..+.+.++.++.-.+
T Consensus 158 ~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 158 PFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCC
Confidence 111 1122235677899999999997677889998887777764433
No 477
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.58 E-value=47 Score=31.16 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=107.9
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee----cCCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----ASTKG 161 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~ 161 (579)
+..-+.+...|.|--.|..+|+...-- -+....-..+..-|||..-++-+.. -|.-.|-++.+.. .|. .....
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~n 149 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADAN 149 (353)
T ss_pred CceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-EeecccccCCCc
Confidence 556677777788888999999876333 3445566788888988776654333 4555665554322 222 22346
Q ss_pred eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.....|.+.|++-.++. |.---.|-.+ ..+..|.. ....-..|+..|+|...++.- .++.|-..|...+... .
T Consensus 150 let~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~ae---v 224 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAE---V 224 (353)
T ss_pred ccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcc---e
Confidence 78889999999988876 2111111111 12223321 123346788899998766643 5777887787766322 1
Q ss_pred eeeeecC-ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 240 VLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+..... ..-.+-++.+ |.|+.-++....|.++-||..+
T Consensus 225 -~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 225 -VPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred -ecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCccc
Confidence 111111 1222333343 6777777766677888877543
No 478
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.49 E-value=90 Score=36.00 Aligned_cols=139 Identities=10% Similarity=0.166 Sum_probs=82.5
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--------ccCCCEEEEEeCCCcEEEEeCC----CCce-----eeE
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--------ATHGSCIYSAGADGMVCEIDPL----TGSL-----LGK 154 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~l~s~~~d~~v~iwd~~----~~~~-----~~~ 154 (579)
.+.|.++.+|+..++.....+ .+-...|..+.. -|.=++++..+.--.|.++-+. ++.. ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 456788999999985544333 344444554432 2333444443344445554322 1110 012
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC-CeEEE--EECCCC---e-e----------------eEEee-cCCCCEEEEEEecC
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA-GQLKT--FNCSDH---K-K----------------MQKFS-GHPGAVRFMTFSDN 210 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~-~~i~v--wd~~~~---~-~----------------~~~~~-~h~~~v~~l~~s~~ 210 (579)
+......|+|+....+|+.+.+|- |.|+= |....+ + + +..+. .+..+|..+.....
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 222345789999899999999987 75432 222221 1 0 11233 56779999999887
Q ss_pred CCEEEEEecCCCeEEEEEcCCC
Q 008041 211 GKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 211 ~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
...+.+-+ ..++|.+|++...
T Consensus 254 R~IlY~ls-ek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLS-EKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeec-cCceEEEEEccCC
Confidence 77777776 7899999999874
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.38 E-value=29 Score=28.64 Aligned_cols=111 Identities=7% Similarity=0.011 Sum_probs=60.4
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCC--------eeeEEeecCCCCEEEEEEec-----CCCEEEEEecCCCeEEEEEcC
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDH--------KKMQKFSGHPGAVRFMTFSD-----NGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~~d~~i~vwd~~ 230 (579)
.|......|+++. |.|.|++.... ..+..+. -...|++++-.+ +...|+.++ ...+..||+.
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt--~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT--QTSLLAYDVE 81 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--cceEEEEEcc
Confidence 4554555566655 88999876533 2233333 345677775443 234666664 6789999999
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
..... ....++.....+.+-.+. ....-++..+.+..|.-||.+-.+.+
T Consensus 82 ~N~d~---Fyke~~DGvn~i~~g~~~-----~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDL---FYKEVPDGVNAIVIGKLG-----DIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred cCchh---hhhhCccceeEEEEEecC-----CCCCcEEEECceEEEEEeCCCCcEEE
Confidence 87644 111222222233333332 22334445555567777876554443
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.18 E-value=65 Score=33.01 Aligned_cols=32 Identities=6% Similarity=0.175 Sum_probs=24.4
Q ss_pred CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 200 ~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
..|.+++..+..+.+++.. .++.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~-~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLT-SDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEE-SSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEe-CCCcEEEEEEeCC
Confidence 4488999988888888887 6999999999863
No 481
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.54 E-value=50 Score=31.52 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=55.8
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeec-----CCCCeeE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRA-----STKGISC 164 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~-----~~~~v~~ 164 (579)
..|.+||..+.+-. .+-.+-.+.|+++.|..+.+.++.|. ....+..||+.+.. ...+.. -.++|..
T Consensus 16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 44889998877654 22234567899999986666666663 35568889986553 333333 1357777
Q ss_pred EEEcc-CCCEEEEEC------CeEEEEECCCCe
Q 008041 165 MAVSS-DGKMLATAA------GQLKTFNCSDHK 190 (579)
Q Consensus 165 l~~~p-~g~~l~~~~------~~i~vwd~~~~~ 190 (579)
+.+.. |+..+..++ ..|..||-.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 77643 444344332 245666544433
No 482
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.42 E-value=69 Score=32.35 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++|+++ .||+|.+.||.--.|..|.+++....+....... .. .-....+--..|..
T Consensus 65 d~G~I~SI--kFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~-~c-------------k~k~~~IlGF~W~~------ 122 (657)
T KOG2377|consen 65 DKGEIKSI--KFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ-EC-------------KTKNANILGFCWTS------ 122 (657)
T ss_pred CCCceeEE--EeccCcceEEEEecCceEEEEecCCCchhhHHHH-Hh-------------ccCcceeEEEEEec------
Confidence 35789555 9999999999999999999998754333221110 00 00011233345544
Q ss_pred cccCCcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCC
Q 008041 82 RKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTG 149 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~ 149 (579)
+.-++.-+..|. ++--+...... ++.+.|...|.-..|.++.+.++-++ ..+++.=+.++++
T Consensus 123 ----s~e~A~i~~~G~e~y~v~pekrsl--RlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 123 ----STEIAFITDQGIEFYQVLPEKRSL--RLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ----CeeEEEEecCCeEEEEEchhhhhh--hhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 233555555553 33333333322 44467888999999999888744333 3334444444444
No 483
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.11 E-value=73 Score=32.42 Aligned_cols=182 Identities=7% Similarity=0.023 Sum_probs=104.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---C-------------
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---G------------- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~---~------------- 149 (579)
..+|.+-+.||.+.+|+-..-... .++.. .--...+.|.+....|++++.+..+..|.... .
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~-~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFS-RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEE-EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 578999999999999997655433 22222 22334567888888999999998898886421 0
Q ss_pred ----c---eeeEeecCCCCeeE---EEEc-cCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEE-EEec----CCC-
Q 008041 150 ----S---LLGKFRASTKGISC---MAVS-SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM-TFSD----NGK- 212 (579)
Q Consensus 150 ----~---~~~~~~~~~~~v~~---l~~~-p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l-~~s~----~~~- 212 (579)
+ +-.++.- ...+.. +.++ .....++.|..++.+.+- +|+.... ........++ .|.. ++.
T Consensus 223 ~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~-krLd~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQ-KRLDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred ccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEE-EecCCceeeEEEEEeecccCCCC
Confidence 0 0111111 123333 3333 233455556688888875 5644332 2233332332 2221 222
Q ss_pred --EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 213 --YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 213 --~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
.++.++ .++++.||.=.+-. ....+.+....+....+. .-...|++-+.+|.+.+-=+.|
T Consensus 300 ~~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 300 RLNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ceEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEeCC
Confidence 355555 68999998743322 122334555555555554 4457788889999998875443
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=80.08 E-value=63 Score=31.72 Aligned_cols=102 Identities=16% Similarity=0.335 Sum_probs=63.3
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCc------EEEEeCCC--C--ceee-----EeecCCC--------CeeEEEEccCCC
Q 008041 116 HPGGVSAISFATHGSCIYSAGADGM------VCEIDPLT--G--SLLG-----KFRASTK--------GISCMAVSSDGK 172 (579)
Q Consensus 116 h~~~V~~l~~~~~~~~l~s~~~d~~------v~iwd~~~--~--~~~~-----~~~~~~~--------~v~~l~~~p~g~ 172 (579)
.-+...++.+.|++..+++.+.+|. ++.+++.. + ..+. .++...+ ..-+|++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467889999876777888888888 66666543 1 1111 1111111 334788877888
Q ss_pred EEEEECC--------eEEEEECCCCeeeEEee---------------cCCCCEEEEEEecCCCEEEEEe
Q 008041 173 MLATAAG--------QLKTFNCSDHKKMQKFS---------------GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 173 ~l~~~~~--------~i~vwd~~~~~~~~~~~---------------~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
++++.-+ .|+.++.. |+.+..+. ..+...-+|+++|+|+.|+++.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 8777652 57777765 65544431 1234578899999999666543
No 485
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.00 E-value=2.7 Score=26.00 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=16.8
Q ss_pred ecCCCCcEEEeecCCcceeeccccce
Q 008041 346 LVNSGEDINLNCSQDGVLLPMSQSLL 371 (579)
Q Consensus 346 ~~h~~~v~~~~~s~dg~~l~~s~s~d 371 (579)
.-.........|||||+.|..++..+
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred ccCCccccCEEEecCCCEEEEEecCC
Confidence 33445677889999999985555444
No 486
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.02 E-value=0.31 Score=48.42 Aligned_cols=131 Identities=12% Similarity=0.146 Sum_probs=89.1
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceee-Eeec-CCCCeeEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLG-KFRA-STKGISCM 165 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~-~~~~-~~~~v~~l 165 (579)
+++++.+..+..||-...... .. .-++...+++|..+|..+ +.+-..+.+++||+.+...-+ .+.+ +.... +
T Consensus 49 lavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l 123 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--L 123 (615)
T ss_pred eehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--H
Confidence 888888888888986544332 22 234556778888887764 445577899999986442111 1111 22222 7
Q ss_pred EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 166 ~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
.|++.+..++.+. |.+.+|+..+.+.+.....|...++++++.+.+.. +.++ .|..+.+
T Consensus 124 ~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~d-cd~~L~v 184 (615)
T KOG2247|consen 124 AWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCD-CDNTLSV 184 (615)
T ss_pred hhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecC-cHHHHHH
Confidence 8899888888888 89999999887776665559999999999998754 4444 4655543
No 487
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=77.85 E-value=59 Score=35.20 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=56.9
Q ss_pred EEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeeEe---ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee
Q 008041 121 SAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGKF---RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK 191 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~---~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~ 191 (579)
..+.|-|+|..+++-+.|| .|..+. ++|-.-..| .+....+..++|+.....++.+. +.+++|-..+-..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE
Confidence 4589999999999877555 355554 223111111 11233556778887777777776 8999998777655
Q ss_pred eEEeecCCCCEEEEEEecCCC
Q 008041 192 MQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 192 ~~~~~~h~~~v~~l~~s~~~~ 212 (579)
..+....-..+.-+.|+|...
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEeecCCCcceeeeccccC
Confidence 444444445566778887543
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.73 E-value=20 Score=31.43 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.8
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCe
Q 008041 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHK 190 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~ 190 (579)
...+++||.||++.++++..|+|.+..+..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~ 35 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPN 35 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCc
Confidence 457899999998888888999999655443
No 489
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.98 E-value=90 Score=31.25 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=87.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
+|+ +..++.+|.+..+|..+|+....+.... . ..+..+ ++. ....++.++.+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~---~~~~~~-----------~v~------------~~~~v~~~s~~ 162 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S---PYYASP-----------PVV------------GDGTVYVGTDD 162 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCC-C---eEEecC-----------cEE------------cCcEEEEecCC
Confidence 665 6667778888899988899888776443 0 111111 000 13445566678
Q ss_pred CeEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCC----Ce-----
Q 008041 96 GDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTK----GI----- 162 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~----~v----- 162 (579)
|.+...|..+|+..+.....- ...+..-....++ .++.+.. ++.+.-.|..+|......+.+.. .+
T Consensus 163 g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~ 241 (370)
T COG1520 163 GHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPA 241 (370)
T ss_pred CeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccccccc
Confidence 999999999998877653211 1111111111233 4555555 66788888888887766432111 11
Q ss_pred -eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecC
Q 008041 163 -SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH 198 (579)
Q Consensus 163 -~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h 198 (579)
..-...-++..+.... +.+...|..+++.+.++...
T Consensus 242 ~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 242 VDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 0001111233322233 67888999999988887653
No 490
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.96 E-value=82 Score=30.79 Aligned_cols=104 Identities=9% Similarity=0.127 Sum_probs=52.2
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeE--EEEecCCCCCCE--EEEEEccCCCEEEEEeC-----CCcEEEEeCCCCce
Q 008041 86 SSLLVLGTGGG-----DVLALAVSAGQL--KWRLSDCHPGGV--SAISFATHGSCIYSAGA-----DGMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~--~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~ 151 (579)
+.++++|+.++ .+..||+.+.+. .+.....-..+. .+++. -+++..+.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55666666543 477788877653 112111111111 12222 25666666653 24688889876532
Q ss_pred --eeEeecCCCCeeEEEEccCCCEEEEEC--C----eEEEEECCCCee
Q 008041 152 --LGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKK 191 (579)
Q Consensus 152 --~~~~~~~~~~v~~l~~~p~g~~l~~~~--~----~i~vwd~~~~~~ 191 (579)
+..+... ......+...++++++.|+ + .+.+||.++.+-
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 2222211 1122223334677777776 1 467889887653
No 491
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=75.77 E-value=80 Score=30.56 Aligned_cols=109 Identities=19% Similarity=0.304 Sum_probs=68.6
Q ss_pred EEEEEEccCCCEEEEE------------------eCCCcEEEEeCCCCceeeEeecC-----------------------
Q 008041 120 VSAISFATHGSCIYSA------------------GADGMVCEIDPLTGSLLGKFRAS----------------------- 158 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~------------------~~d~~v~iwd~~~~~~~~~~~~~----------------------- 158 (579)
...+.+.++|..+++. -.|+.+...|+.+|+.+..+...
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 4455666777666622 13456677788888776655420
Q ss_pred ----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-E--E--EEEEecCCCEEEEEecCCCeEEEE
Q 008041 159 ----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-V--R--FMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 159 ----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~-v--~--~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
---++++...++|.+|++.- ..|.+.|-++|+.+..+.|..+. . . ..++-.+-+++-.+. .++.|.++
T Consensus 139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~-~~~~IslF 217 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESN-DDGTISLF 217 (299)
T ss_pred CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCC-CCCEEEEE
Confidence 01367788888999999887 89999999999999888765221 0 1 122222333332222 57788888
Q ss_pred Ec
Q 008041 228 RT 229 (579)
Q Consensus 228 d~ 229 (579)
|=
T Consensus 218 DN 219 (299)
T PF14269_consen 218 DN 219 (299)
T ss_pred cC
Confidence 76
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.50 E-value=92 Score=31.13 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=100.5
Q ss_pred ceEEeeec-ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc----cCCCE--EEEEe-CC--
Q 008041 69 TCMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA----THGSC--IYSAG-AD-- 138 (579)
Q Consensus 69 ~~~~w~~~-~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~--l~s~~-~d-- 138 (579)
....|..+ ++. .++|+.....+-+.+||+...... .+.. +.++.+... -+|+. |+.++ .+
T Consensus 56 DPAIWvnp~dp~------kSlIigTdK~~GL~VYdL~Gk~lq-~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g 125 (381)
T PF02333_consen 56 DPAIWVNPADPA------KSLIIGTDKKGGLYVYDLDGKELQ-SLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDG 125 (381)
T ss_dssp EEEEE--SS-GG------G-EEEEEETTTEEEEEETTS-EEE-EE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred CCcEecCCCCcc------cceEEEEeCCCCEEEEcCCCcEEE-eecC---CCcceeeeecceecCCceEEEEEEecCcCC
Confidence 34567654 333 556777777788999999876653 3322 333333221 13443 44444 22
Q ss_pred -CcEEEEeCC--CCceeeEeec-------CCCCeeEEEE--cc-CCCEEEEEC---CeEEEEEC---CCC----eeeEEe
Q 008041 139 -GMVCEIDPL--TGSLLGKFRA-------STKGISCMAV--SS-DGKMLATAA---GQLKTFNC---SDH----KKMQKF 195 (579)
Q Consensus 139 -~~v~iwd~~--~~~~~~~~~~-------~~~~v~~l~~--~p-~g~~l~~~~---~~i~vwd~---~~~----~~~~~~ 195 (579)
.+|++|.+. ++. +..+.. ....++.+|+ +| +|.+.+... |.+..|-+ ..+ +.+++|
T Consensus 126 ~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp T-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred CCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 468888664 343 332221 1124666776 33 466555543 66655544 333 457777
Q ss_pred ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec--CceeEEeEEecCCcccCCC-cEEEEEEc
Q 008041 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--PAVFMDCRCIDNGGVDDAG-LYVLAISE 272 (579)
Q Consensus 196 ~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 272 (579)
.. .+.+..+.......+|+.+= ++.-|.-|+.+.........+..... -...+..+..-.. +++ .||++.++
T Consensus 205 ~~-~sQ~EGCVVDDe~g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~---~~g~gYLivSsQ 279 (381)
T PF02333_consen 205 KV-GSQPEGCVVDDETGRLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG---SDGKGYLIVSSQ 279 (381)
T ss_dssp E--SS-EEEEEEETTTTEEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE----CCC-EEEEEEEG
T ss_pred cC-CCcceEEEEecccCCEEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEec---CCCCeEEEEEcC
Confidence 64 45788889988877888864 77777777766443222222322211 1112222222100 233 46666665
Q ss_pred -CCeEEEEEcCCc
Q 008041 273 -TGVCYIWYGQNI 284 (579)
Q Consensus 273 -dg~i~iwd~~~~ 284 (579)
+++..+|+.+..
T Consensus 280 G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 280 GDNSFAVYDREGP 292 (381)
T ss_dssp GGTEEEEEESSTT
T ss_pred CCCeEEEEecCCC
Confidence 889999997643
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.14 E-value=27 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=29.2
Q ss_pred EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008041 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 135 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
+..+|.+..||..+++....+.+ -...+.++++||++.++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 34568899999988875444443 23568899999999888876
No 494
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.05 E-value=1.1e+02 Score=31.91 Aligned_cols=108 Identities=14% Similarity=0.252 Sum_probs=53.5
Q ss_pred EEEEECCCeEEEEEccCCeEEEEec-CCC-CCCEEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCceee
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLS-DCH-PGGVSAISFATHGSCIYSAGA-------------DGMVCEIDPLTGSLLG 153 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h-~~~V~~l~~~~~~~~l~s~~~-------------d~~v~iwd~~~~~~~~ 153 (579)
++.++. +.+..+|.. |+.++... .+. ..-=.++.+.|+|++|+.+.. ...|..+| .+|+.+.
T Consensus 161 ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~ 237 (477)
T PF05935_consen 161 LLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVW 237 (477)
T ss_dssp EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEE
T ss_pred EEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEE
Confidence 344443 777888875 44333321 110 011245677889998877761 22366667 6777666
Q ss_pred Eeec--CC-------------------------CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC
Q 008041 154 KFRA--ST-------------------------KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP 199 (579)
Q Consensus 154 ~~~~--~~-------------------------~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~ 199 (579)
.+.. |- --++++.+.| ++.+++++- ..|...|.++++....+..|.
T Consensus 238 ~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 238 EWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred EEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 5431 10 1467888888 555555554 577888877887776665544
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.96 E-value=1.5e+02 Score=33.44 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=89.7
Q ss_pred EEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCE-E-EEEe-----------CCCcEEEEeCC-CCceeeEeec--C
Q 008041 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSC-I-YSAG-----------ADGMVCEIDPL-TGSLLGKFRA--S 158 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~-l-~s~~-----------~d~~v~iwd~~-~~~~~~~~~~--~ 158 (579)
|+++|..+++.+..+..+.+ -.|.++.|+..... + ++|. .+|.++.|++- .|+.+.-+.. -
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 88888888877655432222 24666777654433 3 3322 23446666543 3442222221 1
Q ss_pred CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEcCCCcc
Q 008041 159 TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~-i~vwd~~~~~~ 234 (579)
.+.+ .+..|-...+++|- ..+++||+-..+.+++.. .-...|+.+.+. +..++.+...|+. ...|+....+.
T Consensus 935 ~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 935 PGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred Cccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 2344 44556555666655 799999998877765542 224567777764 4456666545542 23355444432
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
. ++.-+.-...+....+ -|-..++.+..=|.+.+-.+
T Consensus 1011 ~----~fadD~~pR~Vt~~~~------lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 I----VFADDPVPRHVTALEL------LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred E----EEeCCCccceeeEEEE------ecCCceeeccccCcEEEEEC
Confidence 2 2222222233333333 24566777777777766654
No 496
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.63 E-value=8.2 Score=22.58 Aligned_cols=27 Identities=22% Similarity=0.587 Sum_probs=23.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEe
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRL 112 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~ 112 (579)
+..+++++.+|.++.+|..+|+.+++.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446889999999999999999987654
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.60 E-value=1e+02 Score=34.28 Aligned_cols=88 Identities=15% Similarity=0.008 Sum_probs=54.6
Q ss_pred cccceEEeeecccccccccCCcEEEEEECCC----eEEEEEccCCeE-EEEec------------------------CCC
Q 008041 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG----DVLALAVSAGQL-KWRLS------------------------DCH 116 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g----~i~iwd~~~~~~-~~~~~------------------------~~h 116 (579)
...+.+.|.+..++ +......+++.+..+ .|.-|.+..... +...+ -..
T Consensus 181 ~~LthL~ils~~~~--~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~ 258 (753)
T PF11635_consen 181 YQLTHLEILSPTPD--KDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITL 258 (753)
T ss_pred ccceeEEEeccCCC--CCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEeccccc
Confidence 46778888885554 122244555544333 499999875321 11110 012
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
.+.|.++....-+..++.+..||+|.++|-.+.+.+...
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 245778877777778999999999999998776554433
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.40 E-value=1.1e+02 Score=31.53 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=17.4
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCC
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKG 37 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~ 37 (579)
.++|.|||++|++--..|+|++++-.++
T Consensus 34 ~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 34 ALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred EEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 4577777766655443577777765443
No 499
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.22 E-value=98 Score=31.93 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=45.2
Q ss_pred CEEEEEEecCCCEEEEEecCCCeEEEEEcC---------CCcccccee--------eeeeecCceeEEeEEecCCcccCC
Q 008041 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTD---------GVKKQSASC--------VLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~---------~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
.|..+..++.|..++-+| -+|.+.++=.+ .++.. ..| +++. .+.-.+.-+.|. |+
T Consensus 105 eV~~vl~s~~GS~VaL~G-~~Gi~vMeLp~rwG~~s~~eDgk~~-v~CRt~~i~~~~fts-s~~ltl~Qa~WH-----P~ 176 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG-IKGLMVMELPKRWGKNSEFEDGKST-VNCRTTPVAERFFTS-STSLTLKQAAWH-----PS 176 (741)
T ss_pred EEEEEEecCCCceEEEec-CCeeEEEEchhhcCccceecCCCce-EEEEeecccceeecc-CCceeeeecccc-----CC
Confidence 366777888888887777 47754443211 11110 001 1111 122223334444 55
Q ss_pred C---cEEEEEEcCCeEEEEEcCCceeec
Q 008041 264 G---LYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 264 ~---~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
. ..|..-+.|+++++||+.....+.
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchhh
Confidence 4 678888999999999987666553
No 500
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.17 E-value=1e+02 Score=31.80 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=59.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEe----e-cCCCCeeEEEEccCC------CEEEEEC-----
Q 008041 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKF----R-ASTKGISCMAVSSDG------KMLATAA----- 178 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~----~-~~~~~v~~l~~~p~g------~~l~~~~----- 178 (579)
-...+.++|.|||+.|++--..|.|++++..++.. +..+ . ...+....|+++|+- .+|....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 35678999999998776654469999998654432 2111 1 135678999999874 2333321
Q ss_pred -------CeEEEEECCCC-------eee-EEee---cCCCCEEEEEEecCCCEEEEEe
Q 008041 179 -------GQLKTFNCSDH-------KKM-QKFS---GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 179 -------~~i~vwd~~~~-------~~~-~~~~---~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
..|.-|.+... +.+ ..++ .|. -..|.|.|||..+++.|
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEEC
Confidence 23444544311 111 1121 232 35688999998777765
Done!