Query 008041
Match_columns 579
No_of_seqs 550 out of 4112
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.1E-41 3.8E-46 347.5 36.7 281 2-379 107-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 7.1E-41 2.4E-45 332.9 38.2 280 2-378 54-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 3.1E-40 1E-44 325.2 37.6 281 2-379 31-319 (321)
4 1nr0_A Actin interacting prote 100.0 7.5E-40 2.6E-44 351.5 41.8 347 2-380 58-566 (611)
5 2pbi_B Guanine nucleotide-bind 100.0 7.1E-40 2.4E-44 327.3 37.3 282 2-378 63-354 (354)
6 1nr0_A Actin interacting prote 100.0 2.2E-39 7.5E-44 347.9 38.2 325 3-379 147-609 (611)
7 2ynn_A Coatomer subunit beta'; 100.0 2.3E-38 7.9E-43 309.5 37.9 280 3-380 13-301 (304)
8 3frx_A Guanine nucleotide-bind 100.0 8.1E-38 2.8E-42 307.8 39.2 287 2-380 16-316 (319)
9 4gqb_B Methylosome protein 50; 100.0 1E-38 3.5E-43 316.8 32.9 290 4-380 31-330 (344)
10 4ery_A WD repeat-containing pr 100.0 1E-37 3.5E-42 306.3 37.9 281 2-379 22-310 (312)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.1E-38 2.1E-42 312.3 36.3 294 5-380 18-334 (345)
12 3iz6_a 40S ribosomal protein R 100.0 6.3E-39 2.2E-43 323.9 29.0 289 2-380 65-374 (380)
13 2ymu_A WD-40 repeat protein; u 100.0 1.7E-37 5.9E-42 331.5 40.6 314 3-378 262-577 (577)
14 1erj_A Transcriptional repress 100.0 2.4E-37 8.4E-42 313.7 39.5 302 2-380 63-388 (393)
15 4g56_B MGC81050 protein; prote 100.0 1.8E-38 6E-43 317.5 27.9 285 2-380 41-342 (357)
16 2xzm_R RACK1; ribosome, transl 100.0 3.2E-36 1.1E-40 299.7 40.4 292 2-380 20-339 (343)
17 1r5m_A SIR4-interacting protei 100.0 7.5E-37 2.6E-41 313.0 33.6 339 3-380 45-424 (425)
18 2hes_X YDR267CP; beta-propelle 100.0 2.6E-36 8.8E-41 298.6 35.3 287 2-380 13-327 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 6.2E-36 2.1E-40 319.4 39.6 316 3-380 221-538 (577)
20 3ow8_A WD repeat-containing pr 100.0 1.2E-35 4.2E-40 292.3 36.4 239 3-282 80-320 (321)
21 1vyh_C Platelet-activating fac 100.0 2.3E-35 7.7E-40 300.9 33.5 239 2-281 149-409 (410)
22 3vl1_A 26S proteasome regulato 100.0 1.8E-36 6.1E-41 310.3 25.2 321 11-381 62-419 (420)
23 1gxr_A ESG1, transducin-like e 100.0 1.9E-35 6.5E-40 292.7 31.2 319 3-379 9-335 (337)
24 3zwl_B Eukaryotic translation 100.0 2.3E-34 7.8E-39 288.6 39.2 294 2-380 31-345 (369)
25 4aow_A Guanine nucleotide-bind 100.0 4.6E-34 1.6E-38 283.4 38.9 289 2-380 37-336 (340)
26 2pm9_A Protein WEB1, protein t 100.0 2.7E-36 9.4E-41 308.3 23.5 329 5-380 14-413 (416)
27 3dm0_A Maltose-binding peripla 100.0 1.3E-34 4.5E-39 315.9 36.7 299 2-380 381-692 (694)
28 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.7E-39 291.7 32.5 318 2-380 7-360 (372)
29 2ynn_A Coatomer subunit beta'; 100.0 2.5E-34 8.5E-39 280.9 33.5 249 40-380 6-258 (304)
30 4gqb_B Methylosome protein 50; 100.0 1.7E-34 5.9E-39 286.4 32.6 239 4-285 83-333 (344)
31 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-34 8.6E-39 334.4 39.0 324 3-381 615-1034(1249)
32 1got_B GT-beta; complex (GTP-b 100.0 1.1E-33 3.7E-38 281.0 36.2 236 3-280 97-340 (340)
33 3mkq_A Coatomer beta'-subunit; 100.0 3.7E-34 1.3E-38 318.5 36.0 250 3-293 13-269 (814)
34 4h5i_A Guanine nucleotide-exch 100.0 2.1E-34 7.2E-39 288.7 30.3 283 4-380 15-342 (365)
35 3ei3_B DNA damage-binding prot 100.0 5.2E-34 1.8E-38 288.3 33.1 282 3-380 73-381 (383)
36 3dwl_C Actin-related protein 2 100.0 2.7E-35 9.2E-40 297.0 22.5 241 3-282 11-280 (377)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-33 9E-38 289.1 37.6 304 12-380 124-441 (445)
38 3sfz_A APAF-1, apoptotic pepti 100.0 5.3E-34 1.8E-38 331.6 36.0 338 2-380 656-1115(1249)
39 3k26_A Polycomb protein EED; W 100.0 3.4E-34 1.2E-38 287.2 29.7 298 2-380 17-365 (366)
40 3i2n_A WD repeat-containing pr 100.0 4.5E-34 1.6E-38 285.3 30.4 309 2-380 17-352 (357)
41 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-35 2.1E-39 304.3 23.6 310 21-380 177-516 (524)
42 1sq9_A Antiviral protein SKI8; 100.0 1.3E-33 4.5E-38 286.6 32.5 304 2-380 15-394 (397)
43 2pm7_B Protein transport prote 100.0 2.2E-33 7.4E-38 273.3 31.2 247 2-282 8-284 (297)
44 3dw8_B Serine/threonine-protei 100.0 1.2E-33 4.2E-38 291.6 29.4 257 3-287 28-377 (447)
45 1erj_A Transcriptional repress 100.0 1.2E-32 4E-37 279.3 35.8 240 9-283 127-389 (393)
46 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-33 9.2E-38 311.7 33.9 196 3-233 17-244 (902)
47 3frx_A Guanine nucleotide-bind 100.0 1.9E-32 6.5E-37 269.4 35.9 244 2-284 64-318 (319)
48 4aez_A CDC20, WD repeat-contai 100.0 1.7E-32 5.8E-37 279.0 35.5 275 9-380 97-379 (401)
49 1pgu_A Actin interacting prote 100.0 1.1E-32 3.7E-37 296.4 35.7 330 3-380 160-613 (615)
50 2pbi_B Guanine nucleotide-bind 100.0 2.5E-32 8.5E-37 272.6 34.1 236 4-280 107-354 (354)
51 4gga_A P55CDC, cell division c 100.0 4.8E-32 1.6E-36 277.4 37.0 273 11-380 111-394 (420)
52 3v7d_B Cell division control p 100.0 4.2E-32 1.5E-36 281.7 36.6 306 12-379 127-461 (464)
53 4e54_B DNA damage-binding prot 100.0 2.2E-33 7.4E-38 288.8 26.2 281 4-380 120-429 (435)
54 3odt_A Protein DOA1; ubiquitin 100.0 6.1E-32 2.1E-36 264.6 35.3 272 2-380 17-295 (313)
55 3gre_A Serine/threonine-protei 100.0 2E-33 6.7E-38 289.4 25.4 315 2-378 62-437 (437)
56 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-32 3.7E-37 306.8 33.3 339 3-381 58-605 (902)
57 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-32 1.3E-36 270.4 33.8 252 3-289 61-341 (345)
58 4a11_B DNA excision repair pro 100.0 2.5E-32 8.7E-37 277.8 33.2 300 2-380 42-364 (408)
59 3iz6_a 40S ribosomal protein R 100.0 1.1E-32 3.7E-37 278.2 29.5 244 3-285 108-377 (380)
60 2hes_X YDR267CP; beta-propelle 100.0 2.9E-32 9.9E-37 269.5 31.3 242 2-283 57-328 (330)
61 2xzm_R RACK1; ribosome, transl 100.0 8.2E-32 2.8E-36 267.8 34.3 241 3-285 76-342 (343)
62 1pgu_A Actin interacting prote 100.0 2.8E-32 9.6E-37 293.2 33.4 310 3-381 63-402 (615)
63 1gxr_A ESG1, transducin-like e 100.0 6.6E-32 2.2E-36 267.2 33.4 275 2-326 50-333 (337)
64 4g56_B MGC81050 protein; prote 100.0 1.7E-32 5.8E-37 274.1 29.1 239 4-285 95-345 (357)
65 3bg1_A Protein SEC13 homolog; 100.0 7.9E-33 2.7E-37 271.8 24.8 246 2-282 12-292 (316)
66 4ggc_A P55CDC, cell division c 100.0 4.2E-31 1.4E-35 259.4 35.7 273 11-380 31-314 (318)
67 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-31 1.3E-35 272.1 35.3 272 12-381 138-414 (435)
68 4ery_A WD repeat-containing pr 100.0 7.1E-31 2.4E-35 257.4 34.1 239 3-282 65-311 (312)
69 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-31 5.3E-36 297.4 33.2 244 2-285 54-304 (814)
70 2pm9_A Protein WEB1, protein t 100.0 3.3E-32 1.1E-36 278.0 25.2 246 3-287 67-341 (416)
71 3f3f_A Nucleoporin SEH1; struc 100.0 4.7E-31 1.6E-35 261.9 32.4 253 2-288 10-342 (351)
72 1yfq_A Cell cycle arrest prote 100.0 1.6E-31 5.5E-36 265.3 28.6 278 2-379 10-322 (342)
73 3vl1_A 26S proteasome regulato 100.0 2.4E-31 8.3E-36 272.1 30.3 236 11-284 103-366 (420)
74 4aez_A CDC20, WD repeat-contai 100.0 7.6E-31 2.6E-35 266.8 33.6 247 3-289 134-386 (401)
75 1r5m_A SIR4-interacting protei 100.0 2E-31 6.9E-36 272.6 29.1 274 3-325 108-420 (425)
76 3jrp_A Fusion protein of prote 100.0 6.1E-31 2.1E-35 264.7 31.7 250 2-285 10-289 (379)
77 2pm7_B Protein transport prote 100.0 7E-31 2.4E-35 255.5 29.8 235 86-379 21-283 (297)
78 3k26_A Polycomb protein EED; W 100.0 3.4E-31 1.2E-35 265.3 28.1 243 4-283 70-366 (366)
79 2aq5_A Coronin-1A; WD40 repeat 100.0 8.9E-31 3E-35 266.4 29.1 280 11-381 40-342 (402)
80 3mmy_A MRNA export factor; mRN 100.0 8E-30 2.7E-34 255.4 34.1 280 2-379 38-344 (368)
81 3dm0_A Maltose-binding peripla 100.0 6.2E-30 2.1E-34 278.9 35.3 241 2-282 429-692 (694)
82 1k8k_C P40, ARP2/3 complex 41 100.0 4.4E-30 1.5E-34 258.0 30.6 248 3-287 52-365 (372)
83 3jro_A Fusion protein of prote 100.0 7.7E-31 2.6E-35 287.9 26.2 252 2-287 8-289 (753)
84 4aow_A Guanine nucleotide-bind 100.0 2.8E-29 9.7E-34 248.8 35.0 246 3-285 86-339 (340)
85 1sq9_A Antiviral protein SKI8; 100.0 2.8E-30 9.6E-35 262.0 28.2 250 3-285 62-397 (397)
86 3bg1_A Protein SEC13 homolog; 100.0 1.5E-30 5E-35 255.6 24.4 235 86-380 25-292 (316)
87 3v7d_B Cell division control p 100.0 2.1E-29 7.3E-34 261.3 33.9 243 2-289 161-427 (464)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-30 6E-35 263.9 24.9 296 4-370 16-350 (588)
89 3gre_A Serine/threonine-protei 100.0 4.7E-31 1.6E-35 271.5 21.1 296 12-381 34-359 (437)
90 3f3f_A Nucleoporin SEH1; struc 100.0 7.4E-30 2.5E-34 253.2 28.9 285 67-380 13-336 (351)
91 2j04_B YDR362CP, TAU91; beta p 100.0 9.1E-31 3.1E-35 272.8 23.2 254 3-283 207-517 (524)
92 3i2n_A WD repeat-containing pr 100.0 4.3E-30 1.5E-34 256.4 26.7 250 3-286 65-356 (357)
93 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.8E-29 9.5E-34 259.3 32.8 256 4-281 5-337 (450)
94 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-29 6.5E-34 250.8 30.0 234 11-285 42-294 (343)
95 3jrp_A Fusion protein of prote 100.0 2E-29 7E-34 253.6 30.4 236 86-380 23-286 (379)
96 4gga_A P55CDC, cell division c 100.0 1.1E-28 3.6E-33 252.6 35.3 242 4-287 148-399 (420)
97 3zwl_B Eukaryotic translation 100.0 9.6E-29 3.3E-33 247.6 33.2 243 2-287 73-350 (369)
98 3dwl_C Actin-related protein 2 100.0 3.5E-30 1.2E-34 259.5 22.7 197 2-230 54-280 (377)
99 2xyi_A Probable histone-bindin 100.0 4E-29 1.4E-33 256.4 27.7 248 3-284 128-411 (430)
100 3ei3_B DNA damage-binding prot 100.0 4.5E-29 1.5E-33 252.0 27.5 238 2-283 117-382 (383)
101 3vu4_A KMHSV2; beta-propeller 100.0 3.6E-28 1.2E-32 242.5 33.6 292 2-380 18-335 (355)
102 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-28 1.4E-32 237.2 33.4 236 3-288 59-301 (313)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 7.5E-29 2.6E-33 252.2 28.3 247 2-285 80-344 (402)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-28 1.6E-32 249.9 34.4 262 2-321 158-429 (445)
105 4e54_B DNA damage-binding prot 100.0 4.1E-29 1.4E-33 256.8 22.5 247 2-286 163-433 (435)
106 4ggc_A P55CDC, cell division c 100.0 3.4E-27 1.2E-31 231.4 34.6 239 4-284 68-316 (318)
107 2xyi_A Probable histone-bindin 100.0 6.1E-28 2.1E-32 247.6 29.5 255 65-380 128-409 (430)
108 4h5i_A Guanine nucleotide-exch 100.0 3.6E-28 1.2E-32 243.4 26.3 193 10-232 138-344 (365)
109 4gq1_A NUP37; propeller, trans 100.0 1E-27 3.6E-32 242.7 29.1 232 86-379 101-387 (393)
110 3bws_A Protein LP49; two-domai 100.0 3.5E-27 1.2E-31 242.2 33.1 280 9-380 126-431 (433)
111 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-27 4.8E-32 245.5 29.0 239 2-287 172-418 (435)
112 3jro_A Fusion protein of prote 100.0 1.1E-27 3.7E-32 262.9 27.1 236 86-380 21-284 (753)
113 3dw8_B Serine/threonine-protei 100.0 3.9E-27 1.3E-31 242.8 27.8 257 4-281 94-444 (447)
114 1l0q_A Surface layer protein; 100.0 7.1E-26 2.4E-30 229.2 35.8 265 18-381 3-275 (391)
115 4a11_B DNA excision repair pro 100.0 2.9E-26 9.8E-31 233.0 31.8 250 2-290 98-372 (408)
116 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-26 5.2E-31 229.8 26.8 234 4-280 77-330 (343)
117 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-27 4.9E-32 242.6 18.1 249 3-319 85-350 (588)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-26 1.5E-30 235.4 29.3 242 5-282 104-390 (450)
119 1yfq_A Cell cycle arrest prote 100.0 1.8E-26 6E-31 228.9 25.2 251 66-381 12-282 (342)
120 4gq1_A NUP37; propeller, trans 99.9 2.2E-26 7.6E-31 233.0 24.3 239 12-281 96-387 (393)
121 2w18_A PALB2, fancn, partner a 99.9 8.1E-25 2.8E-29 209.0 31.9 248 19-281 56-355 (356)
122 3mmy_A MRNA export factor; mRN 99.9 1.6E-25 5.5E-30 224.0 26.0 272 32-381 24-304 (368)
123 1l0q_A Surface layer protein; 99.9 4.2E-24 1.4E-28 216.1 35.6 239 9-290 35-282 (391)
124 3vu4_A KMHSV2; beta-propeller 99.9 4.8E-25 1.6E-29 219.9 26.7 233 10-285 63-338 (355)
125 2w18_A PALB2, fancn, partner a 99.9 1.4E-25 4.8E-30 214.3 21.2 212 4-229 112-355 (356)
126 1nir_A Nitrite reductase; hemo 99.9 1.1E-24 3.7E-29 228.9 29.7 323 12-380 144-513 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-23 3.7E-28 214.5 33.5 311 12-363 69-411 (415)
128 3bws_A Protein LP49; two-domai 99.9 1.7E-23 5.7E-28 214.7 33.4 236 4-283 170-432 (433)
129 2ecf_A Dipeptidyl peptidase IV 99.9 5.7E-23 1.9E-27 225.9 31.4 341 4-379 37-457 (741)
130 3u4y_A Uncharacterized protein 99.9 5.9E-22 2E-26 195.4 29.4 287 12-382 4-305 (331)
131 1xfd_A DIP, dipeptidyl aminope 99.9 7.5E-23 2.6E-27 224.3 21.5 321 9-371 20-431 (723)
132 3vgz_A Uncharacterized protein 99.9 1.7E-20 5.9E-25 186.5 34.5 243 9-291 44-311 (353)
133 1nir_A Nitrite reductase; hemo 99.9 3.3E-21 1.1E-25 202.3 30.7 274 86-381 149-458 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.2E-21 2.1E-25 194.1 30.7 225 17-285 143-389 (415)
135 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-21 8.1E-26 211.7 26.3 333 12-381 32-435 (706)
136 1pby_B Quinohemoprotein amine 99.9 8.1E-21 2.8E-25 187.4 27.2 266 18-380 2-309 (337)
137 1ri6_A Putative isomerase YBHE 99.9 3.2E-20 1.1E-24 183.5 30.4 272 19-380 7-307 (343)
138 2ojh_A Uncharacterized protein 99.9 1.1E-20 3.8E-25 182.4 25.7 221 23-284 18-259 (297)
139 3u4y_A Uncharacterized protein 99.9 5.5E-20 1.9E-24 181.2 29.8 238 10-285 44-306 (331)
140 1ri6_A Putative isomerase YBHE 99.9 1.3E-19 4.5E-24 179.2 31.3 239 10-285 42-312 (343)
141 1k32_A Tricorn protease; prote 99.9 1.7E-20 5.9E-25 213.4 25.6 267 87-379 215-500 (1045)
142 1k32_A Tricorn protease; prote 99.9 6E-20 2.1E-24 209.0 29.5 242 10-285 249-504 (1045)
143 2ojh_A Uncharacterized protein 99.9 7.1E-20 2.4E-24 176.7 24.8 231 4-274 42-293 (297)
144 1jmx_B Amine dehydrogenase; ox 99.9 9.9E-20 3.4E-24 180.6 25.7 238 11-290 5-332 (349)
145 3hfq_A Uncharacterized protein 99.8 8.7E-19 3E-23 173.9 31.0 242 10-286 44-322 (347)
146 2ecf_A Dipeptidyl peptidase IV 99.8 9E-20 3.1E-24 200.4 24.6 281 67-380 38-412 (741)
147 3hfq_A Uncharacterized protein 99.8 4.4E-18 1.5E-22 168.8 33.5 233 86-380 51-316 (347)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 1.3E-19 4.6E-24 184.9 22.4 209 11-233 42-280 (434)
149 1pby_B Quinohemoprotein amine 99.8 7.8E-19 2.7E-23 173.1 26.3 240 10-290 38-317 (337)
150 3vgz_A Uncharacterized protein 99.8 4.1E-18 1.4E-22 169.2 31.5 233 10-274 93-335 (353)
151 1z68_A Fibroblast activation p 99.8 6.6E-20 2.3E-24 200.7 19.7 328 10-380 20-442 (719)
152 3scy_A Hypothetical bacterial 99.8 1E-17 3.5E-22 167.2 32.3 239 11-287 55-343 (361)
153 3o4h_A Acylamino-acid-releasin 99.8 1.1E-18 3.6E-23 186.2 26.1 233 4-288 22-279 (582)
154 2z3z_A Dipeptidyl aminopeptida 99.8 3E-18 1E-22 187.2 29.0 254 4-285 121-437 (706)
155 3pe7_A Oligogalacturonate lyas 99.8 4.6E-18 1.6E-22 171.4 26.8 238 11-286 41-332 (388)
156 1xfd_A DIP, dipeptidyl aminope 99.8 2.3E-18 7.9E-23 188.6 26.2 237 9-283 64-393 (723)
157 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-17 6.8E-22 165.4 30.2 240 9-284 43-342 (365)
158 4a5s_A Dipeptidyl peptidase 4 99.8 2.3E-17 7.7E-22 180.8 32.0 247 9-287 20-357 (740)
159 3scy_A Hypothetical bacterial 99.8 1.7E-16 5.7E-21 158.4 33.2 235 13-282 9-290 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 1.6E-17 5.5E-22 169.5 24.9 197 4-230 93-332 (434)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.3E-16 1.5E-20 155.6 29.3 191 86-282 51-290 (365)
162 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-16 5.3E-21 157.4 25.6 144 86-234 11-178 (349)
163 1q7f_A NHL, brain tumor CG1071 99.7 3.3E-15 1.1E-19 143.7 31.8 240 9-284 33-281 (286)
164 3c5m_A Oligogalacturonate lyas 99.7 2E-16 6.9E-21 159.6 21.1 232 11-285 41-331 (396)
165 1z68_A Fibroblast activation p 99.7 1E-16 3.4E-21 175.4 19.1 273 89-380 29-390 (719)
166 3fvz_A Peptidyl-glycine alpha- 99.7 3.7E-15 1.3E-19 146.5 27.8 239 4-283 24-322 (329)
167 3o4h_A Acylamino-acid-releasin 99.7 1.9E-16 6.6E-21 168.7 19.9 265 66-379 22-313 (582)
168 3azo_A Aminopeptidase; POP fam 99.7 5.3E-15 1.8E-19 160.1 26.5 249 4-285 24-327 (662)
169 2dg1_A DRP35, lactonase; beta 99.7 2.3E-14 8E-19 141.0 27.7 242 1-282 3-262 (333)
170 3pe7_A Oligogalacturonate lyas 99.7 2.4E-14 8.1E-19 144.1 25.4 218 30-286 13-276 (388)
171 2oiz_A Aromatic amine dehydrog 99.6 3.4E-14 1.1E-18 141.4 24.2 291 15-362 13-360 (361)
172 4a5s_A Dipeptidyl peptidase 4 99.6 1.2E-14 4E-19 159.3 22.4 194 11-233 67-355 (740)
173 3no2_A Uncharacterized protein 99.6 1.5E-13 5.2E-18 130.9 27.3 213 15-271 3-231 (276)
174 1qks_A Cytochrome CD1 nitrite 99.6 3.4E-13 1.2E-17 141.1 32.4 233 13-283 163-421 (567)
175 2oiz_A Aromatic amine dehydrog 99.6 1.4E-13 4.7E-18 136.9 28.1 237 10-290 54-343 (361)
176 2xdw_A Prolyl endopeptidase; a 99.6 3.5E-13 1.2E-17 146.9 31.7 237 9-285 128-416 (710)
177 1rwi_B Serine/threonine-protei 99.6 2.2E-13 7.6E-18 129.5 26.2 238 9-286 27-267 (270)
178 3fvz_A Peptidyl-glycine alpha- 99.6 1.8E-13 6E-18 134.5 25.4 222 96-380 69-321 (329)
179 3c5m_A Oligogalacturonate lyas 99.6 1.1E-13 3.8E-18 139.4 22.4 249 11-285 86-386 (396)
180 3e5z_A Putative gluconolactona 99.6 6.2E-13 2.1E-17 128.4 26.7 231 10-286 32-289 (296)
181 1q7f_A NHL, brain tumor CG1071 99.6 1.6E-12 5.5E-17 124.7 28.2 181 86-281 41-236 (286)
182 2gop_A Trilobed protease; beta 99.6 1.4E-12 4.9E-17 128.8 28.6 213 12-283 21-291 (347)
183 2dg1_A DRP35, lactonase; beta 99.6 4.3E-12 1.5E-16 124.6 31.4 224 10-274 49-301 (333)
184 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.8E-17 127.9 26.6 234 12-290 50-308 (328)
185 3azo_A Aminopeptidase; POP fam 99.6 1.9E-13 6.5E-18 147.9 21.7 238 12-286 83-372 (662)
186 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-12 7.4E-17 140.6 30.2 193 86-288 136-373 (710)
187 2gop_A Trilobed protease; beta 99.5 6.6E-13 2.3E-17 131.3 23.5 218 9-282 62-330 (347)
188 3no2_A Uncharacterized protein 99.5 1.6E-12 5.4E-17 123.8 24.7 188 86-290 5-202 (276)
189 1qks_A Cytochrome CD1 nitrite 99.5 8.4E-12 2.9E-16 130.6 31.2 192 86-289 167-379 (567)
190 3e5z_A Putative gluconolactona 99.5 9.5E-12 3.2E-16 120.0 27.0 189 69-282 31-245 (296)
191 2bkl_A Prolyl endopeptidase; m 99.5 1.3E-12 4.4E-17 142.0 22.9 236 9-286 124-400 (695)
192 2bkl_A Prolyl endopeptidase; m 99.5 3.3E-12 1.1E-16 138.8 25.6 236 13-282 75-348 (695)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.8E-11 6.1E-16 119.0 28.3 237 10-283 22-299 (314)
194 3dsm_A Uncharacterized protein 99.5 2.1E-11 7.1E-16 119.5 25.6 223 25-286 15-256 (328)
195 2z2n_A Virginiamycin B lyase; 99.4 2.1E-10 7.3E-15 110.3 31.7 231 9-281 18-253 (299)
196 3g4e_A Regucalcin; six bladed 99.4 1.6E-10 5.4E-15 111.5 29.8 198 70-287 17-233 (297)
197 1yr2_A Prolyl oligopeptidase; 99.4 3.9E-11 1.3E-15 131.3 26.9 235 10-286 167-444 (741)
198 2z2n_A Virginiamycin B lyase; 99.4 4.9E-10 1.7E-14 107.7 30.6 233 9-284 60-296 (299)
199 3hrp_A Uncharacterized protein 99.4 4.7E-10 1.6E-14 113.1 30.5 233 9-281 134-408 (409)
200 2mad_H Methylamine dehydrogena 99.4 9.5E-10 3.3E-14 109.3 32.1 241 11-289 71-356 (373)
201 2mad_H Methylamine dehydrogena 99.4 1.6E-09 5.5E-14 107.6 32.9 186 12-233 27-245 (373)
202 1yr2_A Prolyl oligopeptidase; 99.4 7E-11 2.4E-15 129.2 25.3 184 86-282 174-392 (741)
203 3iuj_A Prolyl endopeptidase; h 99.4 1E-10 3.5E-15 126.8 25.6 233 10-285 133-407 (693)
204 3sjl_D Methylamine dehydrogena 99.4 3.3E-10 1.1E-14 111.2 26.5 239 11-291 83-371 (386)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.4E-10 1.8E-14 108.5 27.8 191 86-285 29-258 (314)
206 2qc5_A Streptogramin B lactona 99.3 1.8E-09 6.2E-14 103.7 31.2 232 9-281 23-258 (300)
207 1rwi_B Serine/threonine-protei 99.3 8.3E-11 2.8E-15 111.5 19.5 194 10-233 71-266 (270)
208 1xip_A Nucleoporin NUP159; bet 99.3 2.3E-11 7.7E-16 120.0 15.2 183 5-218 39-232 (388)
209 2ghs_A AGR_C_1268P; regucalcin 99.3 3.1E-09 1E-13 103.8 30.1 183 86-281 61-258 (326)
210 2qc5_A Streptogramin B lactona 99.3 3.6E-09 1.2E-13 101.6 29.4 230 9-281 65-298 (300)
211 3g4e_A Regucalcin; six bladed 99.3 3.3E-09 1.1E-13 102.1 28.5 219 11-272 18-261 (297)
212 3sjl_D Methylamine dehydrogena 99.3 1.6E-09 5.6E-14 106.3 26.1 276 86-380 44-362 (386)
213 1yiq_A Quinohemoprotein alcoho 99.3 7E-10 2.4E-14 119.4 25.0 240 16-291 120-513 (689)
214 3c75_H MADH, methylamine dehyd 99.3 1.8E-09 6.3E-14 107.9 26.1 237 11-290 123-409 (426)
215 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.3E-13 99.5 31.0 218 10-272 53-291 (326)
216 1kb0_A Quinohemoprotein alcoho 99.2 1.4E-09 4.8E-14 116.9 23.8 241 16-291 127-515 (677)
217 3hrp_A Uncharacterized protein 99.2 2.8E-08 9.4E-13 100.1 30.2 186 86-285 142-356 (409)
218 2ece_A 462AA long hypothetical 99.2 8.7E-09 3E-13 101.7 25.2 232 12-271 88-399 (462)
219 2hz6_A Endoplasmic reticulum t 99.2 2.2E-11 7.6E-16 121.2 5.8 222 16-285 8-238 (369)
220 3c75_H MADH, methylamine dehyd 99.1 8.2E-09 2.8E-13 103.2 23.7 274 86-380 84-401 (426)
221 2qe8_A Uncharacterized protein 99.1 1.3E-09 4.6E-14 107.3 17.3 239 10-279 21-317 (343)
222 1yiq_A Quinohemoprotein alcoho 99.1 2.7E-08 9.4E-13 107.1 27.6 199 17-235 70-342 (689)
223 2iwa_A Glutamine cyclotransfer 99.1 1.6E-08 5.6E-13 93.9 22.2 191 11-232 26-238 (266)
224 1fwx_A Nitrous oxide reductase 99.1 2E-08 6.9E-13 102.7 24.8 240 15-285 99-433 (595)
225 1xip_A Nucleoporin NUP159; bet 99.1 1.5E-09 5.1E-14 107.0 16.0 163 86-270 49-231 (388)
226 2hz6_A Endoplasmic reticulum t 99.1 2.7E-11 9.2E-16 120.6 3.5 184 86-290 9-199 (369)
227 3dr2_A Exported gluconolactona 99.1 8.7E-09 3E-13 99.6 21.1 217 11-274 50-298 (305)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.1 5.4E-08 1.9E-12 97.0 27.1 234 16-290 52-303 (376)
229 1kb0_A Quinohemoprotein alcoho 99.0 8.6E-08 2.9E-12 103.0 28.0 199 17-235 77-350 (677)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.0 6E-08 2.1E-12 96.7 25.2 224 16-289 102-343 (376)
231 3dr2_A Exported gluconolactona 99.0 7.1E-08 2.4E-12 93.1 24.8 180 87-281 58-265 (305)
232 1kv9_A Type II quinohemoprotei 99.0 4.3E-08 1.5E-12 105.2 23.9 240 17-291 117-496 (668)
233 1mda_H Methylamine dehydrogena 99.0 6.8E-09 2.3E-13 102.1 15.9 231 11-291 70-354 (368)
234 1fwx_A Nitrous oxide reductase 99.0 2.5E-07 8.5E-12 94.7 27.3 189 86-283 101-361 (595)
235 2ece_A 462AA long hypothetical 98.9 6.4E-08 2.2E-12 95.6 19.7 190 86-282 96-351 (462)
236 1w6s_A Methanol dehydrogenase 98.9 4.1E-07 1.4E-11 95.5 26.3 245 12-291 112-511 (599)
237 3nol_A Glutamine cyclotransfer 98.9 1.7E-07 5.7E-12 86.0 20.3 173 12-218 49-243 (262)
238 2ad6_A Methanol dehydrogenase 98.9 4.8E-07 1.7E-11 95.0 26.3 240 17-291 115-502 (571)
239 3iuj_A Prolyl endopeptidase; h 98.9 9.4E-08 3.2E-12 103.5 21.0 186 86-285 140-361 (693)
240 3hxj_A Pyrrolo-quinoline quino 98.9 1.6E-07 5.4E-12 91.5 20.3 249 12-288 26-288 (330)
241 1mda_H Methylamine dehydrogena 98.9 9.9E-08 3.4E-12 93.8 18.2 125 97-231 47-194 (368)
242 3hxj_A Pyrrolo-quinoline quino 98.8 4.2E-07 1.4E-11 88.5 22.8 216 17-282 107-323 (330)
243 2qe8_A Uncharacterized protein 98.8 2.6E-07 8.9E-12 90.8 21.3 188 9-218 70-309 (343)
244 1npe_A Nidogen, entactin; glyc 98.8 4.7E-06 1.6E-10 78.4 28.1 190 86-290 48-245 (267)
245 3mbr_X Glutamine cyclotransfer 98.8 2E-06 7E-11 78.1 23.0 174 12-218 27-222 (243)
246 1flg_A Protein (quinoprotein e 98.7 1.9E-06 6.5E-11 90.6 24.1 244 17-291 117-524 (582)
247 3nok_A Glutaminyl cyclase; bet 98.7 1E-06 3.4E-11 80.7 18.9 173 12-218 61-253 (268)
248 2fp8_A Strictosidine synthase; 98.7 7.2E-06 2.5E-10 79.6 26.4 249 11-282 24-312 (322)
249 1kv9_A Type II quinohemoprotei 98.7 1E-05 3.4E-10 86.8 29.4 198 17-235 66-337 (668)
250 1npe_A Nidogen, entactin; glyc 98.7 3.2E-05 1.1E-09 72.7 28.2 194 10-234 40-241 (267)
251 2iwa_A Glutamine cyclotransfer 98.6 1.4E-05 4.8E-10 74.1 24.6 183 88-284 33-238 (266)
252 2ad6_A Methanol dehydrogenase 98.6 2.5E-05 8.5E-10 82.0 28.3 197 17-235 62-339 (571)
253 3nok_A Glutaminyl cyclase; bet 98.5 6.2E-06 2.1E-10 75.5 17.6 157 118-290 55-217 (268)
254 3nol_A Glutamine cyclotransfer 98.5 6.2E-06 2.1E-10 75.5 17.5 160 116-290 39-208 (262)
255 2p4o_A Hypothetical protein; p 98.5 8.2E-05 2.8E-09 71.4 26.1 225 10-273 36-278 (306)
256 1ijq_A LDL receptor, low-densi 98.5 0.00028 9.6E-09 68.0 29.7 231 19-287 3-242 (316)
257 2xe4_A Oligopeptidase B; hydro 98.4 5.6E-05 1.9E-09 82.3 25.7 191 10-229 178-398 (751)
258 3mbr_X Glutamine cyclotransfer 98.4 3.1E-05 1E-09 70.3 19.5 158 118-290 21-186 (243)
259 1flg_A Protein (quinoprotein e 98.4 8E-05 2.7E-09 78.2 25.1 195 18-235 69-359 (582)
260 2fp8_A Strictosidine synthase; 98.3 0.00019 6.4E-09 69.5 24.9 185 86-281 30-267 (322)
261 3p5b_L Low density lipoprotein 98.3 0.0011 3.8E-08 66.0 30.3 192 87-288 125-325 (400)
262 3v64_C Agrin; beta propeller, 98.3 0.0015 5.1E-08 63.8 30.2 189 86-287 85-279 (349)
263 1w6s_A Methanol dehydrogenase 98.3 0.00017 6E-09 75.6 24.8 147 86-235 252-507 (599)
264 3v65_B Low-density lipoprotein 98.3 0.00057 1.9E-08 67.9 27.4 190 86-287 128-322 (386)
265 4a2l_A BT_4663, two-component 98.2 0.0013 4.3E-08 72.3 31.9 246 4-285 310-573 (795)
266 1k3i_A Galactose oxidase precu 98.2 0.00011 3.7E-09 78.8 21.8 242 8-284 188-498 (656)
267 3sov_A LRP-6, low-density lipo 98.2 0.0012 4E-08 63.6 26.9 190 86-287 47-242 (318)
268 3qqz_A Putative uncharacterize 98.2 0.0012 4E-08 60.8 25.3 196 67-281 28-251 (255)
269 4a2l_A BT_4663, two-component 98.1 0.0025 8.7E-08 69.9 31.7 239 9-285 360-616 (795)
270 2p4o_A Hypothetical protein; p 98.1 0.0017 5.9E-08 62.0 26.4 183 86-282 43-241 (306)
271 1ijq_A LDL receptor, low-densi 98.1 0.0032 1.1E-07 60.5 28.1 181 91-283 5-195 (316)
272 3tc9_A Hypothetical hydrolase; 98.1 0.00084 2.9E-08 67.6 24.7 148 10-187 141-300 (430)
273 3v65_B Low-density lipoprotein 98.1 0.002 6.9E-08 63.9 26.6 195 9-233 119-320 (386)
274 3v64_C Agrin; beta propeller, 98.1 0.0025 8.5E-08 62.2 26.7 144 86-233 128-277 (349)
275 3qqz_A Putative uncharacterize 98.1 0.0026 8.7E-08 58.5 24.7 189 11-229 32-251 (255)
276 3amr_A 3-phytase; beta-propell 97.9 0.0087 3E-07 57.2 26.7 203 69-287 28-268 (355)
277 4hw6_A Hypothetical protein, I 97.9 0.0033 1.1E-07 63.3 25.3 189 10-229 143-372 (433)
278 3m0c_C LDL receptor, low-densi 97.9 0.0077 2.6E-07 65.2 29.2 190 87-287 437-636 (791)
279 3amr_A 3-phytase; beta-propell 97.9 0.002 6.7E-08 61.7 21.5 189 17-230 40-262 (355)
280 3tc9_A Hypothetical hydrolase; 97.9 0.0045 1.5E-07 62.3 25.8 141 87-231 150-301 (430)
281 2xe4_A Oligopeptidase B; hydro 97.9 0.00062 2.1E-08 74.0 20.6 183 86-281 186-398 (751)
282 3sov_A LRP-6, low-density lipo 97.8 0.01 3.5E-07 56.9 25.8 145 86-234 91-241 (318)
283 3p5b_L Low density lipoprotein 97.8 0.017 5.9E-07 57.4 27.7 183 89-283 85-277 (400)
284 3v9f_A Two-component system se 97.8 0.0053 1.8E-07 67.1 26.1 185 87-285 374-570 (781)
285 4hw6_A Hypothetical protein, I 97.8 0.0036 1.2E-07 63.0 22.7 141 87-231 153-304 (433)
286 1k3i_A Galactose oxidase precu 97.8 0.00053 1.8E-08 73.4 17.6 227 11-272 248-530 (656)
287 2p9w_A MAL S 1 allergenic prot 97.8 0.007 2.4E-07 57.4 22.6 152 69-231 16-215 (334)
288 1n7d_A LDL receptor, low-densi 97.8 0.00014 4.9E-09 78.1 12.2 192 88-290 419-621 (699)
289 3kya_A Putative phosphatase; s 97.7 0.011 3.8E-07 59.8 23.9 152 10-187 143-340 (496)
290 3v9f_A Two-component system se 97.7 0.012 4.3E-07 64.2 26.5 183 87-285 418-613 (781)
291 2xzh_A Clathrin heavy chain 1; 97.7 0.036 1.2E-06 52.0 25.0 194 86-290 78-297 (365)
292 3m0c_C LDL receptor, low-densi 97.7 0.015 5.2E-07 62.9 26.3 143 87-233 484-634 (791)
293 2vpj_A Kelch-like protein 12; 97.6 0.0079 2.7E-07 57.1 21.4 183 86-284 63-279 (301)
294 3sre_A PON1, serum paraoxonase 97.6 0.015 5.1E-07 56.3 22.7 138 88-230 128-297 (355)
295 1bpo_A Protein (clathrin); cla 97.5 0.059 2E-06 52.7 25.1 194 86-290 77-296 (494)
296 4a0p_A LRP6, LRP-6, low-densit 97.5 0.074 2.5E-06 56.1 27.9 183 88-282 8-196 (628)
297 2p9w_A MAL S 1 allergenic prot 97.4 0.0086 2.9E-07 56.7 17.8 153 120-282 15-214 (334)
298 2xn4_A Kelch-like protein 2; s 97.4 0.037 1.3E-06 52.4 23.0 183 86-284 62-277 (302)
299 3s94_A LRP-6, low-density lipo 97.4 0.044 1.5E-06 57.7 25.4 186 88-287 53-247 (619)
300 3sre_A PON1, serum paraoxonase 97.4 0.032 1.1E-06 54.0 22.4 136 94-232 81-253 (355)
301 3ii7_A Kelch-like protein 7; p 97.4 0.038 1.3E-06 52.5 23.1 183 86-284 56-273 (306)
302 2xbg_A YCF48-like protein; pho 97.3 0.087 3E-06 50.6 24.8 178 89-281 135-320 (327)
303 1n7d_A LDL receptor, low-densi 97.3 0.0011 3.8E-08 71.2 11.0 143 87-233 466-616 (699)
304 1zgk_A Kelch-like ECH-associat 97.2 0.044 1.5E-06 52.1 20.8 183 86-284 71-288 (308)
305 3pbp_A Nucleoporin NUP82; beta 97.1 0.036 1.2E-06 54.2 18.8 147 127-280 30-209 (452)
306 4asc_A Kelch repeat and BTB do 97.1 0.11 3.8E-06 49.4 22.7 140 86-233 46-223 (315)
307 4a0p_A LRP6, LRP-6, low-densit 97.1 0.41 1.4E-05 50.4 31.3 185 86-285 49-239 (628)
308 2xbg_A YCF48-like protein; pho 97.1 0.085 2.9E-06 50.6 21.4 111 115-229 202-320 (327)
309 2ism_A Putative oxidoreductase 97.1 0.25 8.5E-06 47.9 24.8 197 9-232 34-298 (352)
310 3s94_A LRP-6, low-density lipo 97.0 0.16 5.6E-06 53.4 24.9 185 89-283 11-202 (619)
311 3kya_A Putative phosphatase; s 97.0 0.032 1.1E-06 56.4 18.5 143 88-231 153-341 (496)
312 3a9g_A Putative uncharacterize 97.0 0.29 9.9E-06 47.5 26.1 195 9-232 32-297 (354)
313 3ei3_A DNA damage-binding prot 96.8 0.55 1.9E-05 53.2 28.1 140 86-231 844-999 (1158)
314 2vpj_A Kelch-like protein 12; 96.8 0.17 5.8E-06 47.7 20.9 142 86-233 113-280 (301)
315 2woz_A Kelch repeat and BTB do 96.8 0.28 9.6E-06 46.7 22.3 130 98-233 80-233 (318)
316 2be1_A Serine/threonine-protei 96.7 0.011 3.9E-07 56.6 11.9 196 86-288 10-236 (339)
317 2be1_A Serine/threonine-protei 96.7 0.012 4.1E-07 56.4 11.6 116 18-157 11-139 (339)
318 2xzh_A Clathrin heavy chain 1; 96.6 0.46 1.6E-05 44.7 28.6 234 11-287 72-336 (365)
319 3ei3_A DNA damage-binding prot 96.6 1.1 3.9E-05 50.6 28.4 176 96-283 807-999 (1158)
320 1xi4_A Clathrin heavy chain; a 96.6 0.16 5.4E-06 57.3 20.5 195 86-291 77-297 (1630)
321 3ii7_A Kelch-like protein 7; p 96.5 0.3 1E-05 46.1 20.6 142 86-233 102-274 (306)
322 2xn4_A Kelch-like protein 2; s 96.5 0.21 7.2E-06 47.1 19.1 142 86-233 109-278 (302)
323 2uvk_A YJHT; unknown function, 96.4 0.53 1.8E-05 45.5 22.1 189 86-287 66-346 (357)
324 4asc_A Kelch repeat and BTB do 96.4 0.45 1.5E-05 45.1 21.0 181 88-284 7-222 (315)
325 1tl2_A L10, protein (tachylect 96.3 0.34 1.2E-05 42.8 17.0 137 86-228 4-160 (236)
326 1zgk_A Kelch-like ECH-associat 96.2 0.22 7.6E-06 47.1 17.3 183 86-284 25-241 (308)
327 1bpo_A Protein (clathrin); cla 96.2 1.1 3.8E-05 43.9 30.8 234 10-286 70-334 (494)
328 2woz_A Kelch repeat and BTB do 96.0 0.64 2.2E-05 44.1 19.6 102 86-191 110-234 (318)
329 3pbp_A Nucleoporin NUP82; beta 96.0 0.051 1.7E-06 53.1 11.3 132 5-145 67-209 (452)
330 2g8s_A Glucose/sorbosone dehyd 95.9 1.4 4.6E-05 42.6 24.1 29 9-38 21-49 (353)
331 2ism_A Putative oxidoreductase 95.3 0.97 3.3E-05 43.7 18.0 98 118-218 31-153 (352)
332 3a9g_A Putative uncharacterize 95.2 2.4 8.1E-05 40.9 23.4 127 88-217 41-215 (354)
333 3ott_A Two-component system se 95.2 4.3 0.00015 43.8 30.0 178 86-284 73-261 (758)
334 3das_A Putative oxidoreductase 94.9 2.8 9.6E-05 40.1 26.1 31 9-39 35-65 (347)
335 2zwa_A Leucine carboxyl methyl 94.8 1.5 5E-05 46.9 19.4 147 86-233 398-579 (695)
336 1xi4_A Clathrin heavy chain; a 94.6 1.5 5E-05 49.8 18.6 191 12-235 72-293 (1630)
337 1tl2_A L10, protein (tachylect 94.6 0.77 2.6E-05 40.5 13.3 137 129-277 4-157 (236)
338 3s25_A Hypothetical 7-bladed b 94.2 3.7 0.00013 38.5 22.6 133 86-233 115-257 (302)
339 2uvk_A YJHT; unknown function, 94.1 0.9 3.1E-05 43.8 14.6 90 86-178 20-126 (357)
340 3sbq_A Nitrous-oxide reductase 94.1 5.8 0.0002 40.2 25.6 250 20-284 73-409 (638)
341 1cru_A Protein (soluble quinop 93.8 6 0.00021 39.5 27.7 31 9-39 30-60 (454)
342 2zwa_A Leucine carboxyl methyl 93.7 6.4 0.00022 41.9 21.3 147 86-233 452-637 (695)
343 2g8s_A Glucose/sorbosone dehyd 93.6 5.4 0.00019 38.3 24.7 129 86-216 29-214 (353)
344 3s25_A Hypothetical 7-bladed b 93.4 5.2 0.00018 37.5 22.4 157 96-282 88-254 (302)
345 1cru_A Protein (soluble quinop 92.5 9.5 0.00032 38.1 20.2 101 118-218 27-162 (454)
346 3sbq_A Nitrous-oxide reductase 92.2 1.1 3.8E-05 45.3 11.4 110 160-272 323-454 (638)
347 3das_A Putative oxidoreductase 91.4 10 0.00035 36.2 18.4 102 117-218 31-158 (347)
348 3ott_A Two-component system se 90.0 23 0.00079 37.9 27.0 143 86-233 429-588 (758)
349 2wg3_C Hedgehog-interacting pr 82.2 19 0.00065 35.9 13.6 101 118-218 14-157 (463)
350 3qhy_B Beta-lactamase inhibito 79.7 37 0.0013 31.1 17.0 133 89-232 76-208 (282)
351 3qhy_B Beta-lactamase inhibito 76.5 46 0.0016 30.5 15.9 169 93-284 40-208 (282)
352 3q6k_A 43.2 kDa salivary prote 73.4 67 0.0023 30.9 21.9 134 96-231 123-306 (381)
353 4gq2_M Nucleoporin NUP120; bet 71.3 44 0.0015 36.9 13.7 38 119-156 237-274 (950)
354 3no0_A DNA gyrase subunit A; D 69.8 66 0.0023 29.3 22.3 188 86-284 35-247 (276)
355 3q6k_A 43.2 kDa salivary prote 68.8 85 0.0029 30.2 19.8 80 140-219 124-243 (381)
356 3uc1_A DNA gyrase subunit A; D 67.9 81 0.0028 29.6 21.7 190 86-284 53-280 (327)
357 4gq2_M Nucleoporin NUP120; bet 64.0 10 0.00034 42.0 6.7 36 9-44 239-274 (950)
358 3s6n_2 SurviVal of motor neuro 63.2 14 0.00049 33.7 6.5 60 495-557 180-239 (280)
359 4fhn_B Nucleoporin NUP120; pro 62.7 37 0.0013 38.4 11.3 37 120-156 240-276 (1139)
360 3kci_A Probable E3 ubiquitin-p 60.6 1.2E+02 0.0041 29.1 26.7 193 86-287 62-297 (389)
361 4fhn_B Nucleoporin NUP120; pro 59.5 9.1 0.00031 43.4 5.5 36 9-44 241-276 (1139)
362 3b7f_A Glycosyl hydrolase, BNR 58.9 1.3E+02 0.0044 28.8 16.2 97 86-184 22-143 (394)
363 4a9v_A PHOX; hydrolase, beta-p 57.7 42 0.0014 34.3 9.3 59 161-219 477-550 (592)
364 4a9v_A PHOX; hydrolase, beta-p 56.6 49 0.0017 33.8 9.6 61 118-178 476-549 (592)
365 3zwu_A Alkaline phosphatase PH 55.6 36 0.0012 35.1 8.6 17 119-135 477-493 (592)
366 1zi0_A DNA gyrase subunit A; b 53.2 1.4E+02 0.0048 27.6 24.8 189 86-283 53-277 (307)
367 3zwu_A Alkaline phosphatase PH 48.3 55 0.0019 33.7 8.7 58 161-218 477-549 (592)
368 2wg3_C Hedgehog-interacting pr 47.5 2.2E+02 0.0075 28.1 15.9 110 160-274 14-160 (463)
369 3f7f_A Nucleoporin NUP120; nuc 45.9 23 0.00078 37.3 5.3 31 14-44 228-258 (729)
370 3uc1_A DNA gyrase subunit A; D 44.6 2E+02 0.0069 26.9 18.6 142 86-231 109-279 (327)
371 4hvt_A Ritya.17583.B, post-pro 43.7 3.1E+02 0.011 28.9 18.9 188 87-285 143-383 (711)
372 3f7f_A Nucleoporin NUP120; nuc 40.5 42 0.0014 35.3 6.3 37 119-157 223-259 (729)
373 1wp5_A Topoisomerase IV; broke 38.9 2.4E+02 0.0083 26.2 22.5 189 86-283 50-277 (323)
374 2l9b_A MRNA 3'-END-processing 38.0 17 0.00059 27.5 2.2 35 490-524 37-72 (109)
375 3dwl_G Actin-related protein 2 37.8 42 0.0014 27.2 4.6 53 484-536 82-135 (152)
376 4hvt_A Ritya.17583.B, post-pro 36.1 4.1E+02 0.014 28.0 24.5 193 12-232 136-382 (711)
377 1k8k_G P16, ARP2/3 complex 16 35.7 49 0.0017 26.8 4.7 53 484-536 81-134 (151)
378 1suu_A DNA gyrase subunit A; t 33.1 2.9E+02 0.01 25.4 23.6 190 86-284 8-232 (312)
379 1suu_A DNA gyrase subunit A; t 28.8 3.5E+02 0.012 24.9 26.3 143 86-231 58-231 (312)
380 4h3o_A Lectin; cadmium, plant 24.4 2.2E+02 0.0075 21.2 9.0 42 92-134 57-98 (105)
381 1q47_A Semaphorin 3A; beta pro 22.3 1.9E+02 0.0065 28.9 7.4 58 86-143 421-487 (495)
382 3mez_B Mannose-specific lectin 22.2 2.6E+02 0.0087 21.1 10.6 82 86-177 24-105 (113)
383 1b2p_A Protein (lectin); manno 22.2 2.7E+02 0.0091 21.3 12.0 43 90-133 65-107 (119)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-41 Score=347.54 Aligned_cols=281 Identities=15% Similarity=0.267 Sum_probs=248.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++|++|+.||+|+|||+.+++....+.+|...+.++.|+++
T Consensus 107 h~~~V--~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~----------------------- 161 (410)
T 1vyh_C 107 HRSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS----------------------- 161 (410)
T ss_dssp CSSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-----------------------
Confidence 35678 55599999999999999999999999999999999888776666666555
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++|+.||.|++||+.+++++..+ .+|...|.+++|+|+++++++|+.|++|++||+.++.++.++.+|...
T Consensus 162 ----~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~ 236 (410)
T 1vyh_C 162 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236 (410)
T ss_dssp ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ----CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence 788999999999999999999887555 789999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--------------------CCEEEEEec
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAV 219 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~--------------------~~~l~s~~~ 219 (579)
|.++.++|+|+++++|+ +.|++||+.++++...+.+|...|.+++|+|+ +.++++++
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs- 315 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS- 315 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-
Confidence 99999999999999998 89999999999999999999999999999996 66888887
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeee
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
.|+.|++||++++. ++..+..+...+..+.|+ |+|++|++++.||+|++||+.+++.+
T Consensus 316 ~D~~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~------------ 373 (410)
T 1vyh_C 316 RDKTIKMWDVSTGM-----CLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCM------------ 373 (410)
T ss_dssp TTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCC------------
T ss_pred CCCeEEEEECCCCc-----eEEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceE------------
Confidence 79999999999876 345555666677788887 99999999999999999997654321
Q ss_pred ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
..+.+|...|.+++|+|+|.+| +|||.|+++++|++
T Consensus 374 -------------------------------------------~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 -------------------------------------------KTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 409 (410)
T ss_dssp -------------------------------------------EEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred -------------------------------------------EEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence 1344788899999999999999 99999999999985
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.1e-41 Score=332.89 Aligned_cols=280 Identities=15% Similarity=0.196 Sum_probs=241.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|||++|++|+.||+|+|||..++.....+..|...+..+.|+++
T Consensus 54 H~~~v--~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 108 (340)
T 1got_B 54 HLAKI--YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS----------------------- 108 (340)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-----------------------
T ss_pred CCCce--EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-----------------------
Confidence 35678 55699999999999999999999999999999888877666655555554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
+.++++|+.|+.|++||+.+++ .......+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|
T Consensus 109 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp ----SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred ----CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 7889999999999999998753 22233468999999999998875 889999999999999999999999999
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
.+.|.+++|+|+++++++|+ +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||++..+..
T Consensus 184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~- 261 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL- 261 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE-
Confidence 99999999999999999998 8999999999999999999999999999999999999988 7999999999987533
Q ss_pred ceeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041 237 ASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 237 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
....+. ...+..+.|+ |+|++|++|+.||.|++||..+++.+
T Consensus 262 ----~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~--------------------------- 305 (340)
T 1got_B 262 ----MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA--------------------------- 305 (340)
T ss_dssp ----EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred ----EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe---------------------------
Confidence 233332 2356778887 99999999999999999997654321
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus 306 ----------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd 340 (340)
T 1got_B 306 ----------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp ----------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred ----------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence 1344788899999999999999 9999999999996
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=325.19 Aligned_cols=281 Identities=14% Similarity=0.162 Sum_probs=241.9
Q ss_pred CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
+.++| .+++|+|+ +.+|++|+.|++|+|||+.+++. ...+.+|...+.++.++++
T Consensus 31 H~~~V--~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~----------------- 91 (321)
T 3ow8_A 31 HDDAI--WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT----------------- 91 (321)
T ss_dssp SSSCE--EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------------
T ss_pred CCCcE--EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------------
Confidence 46788 55599985 67999999999999999987764 3456666665555555444
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+.++++++.|+.|++||+.+++.+..+ ..|...+.+++|+|+++++++++.|+.|++||+.+++....+
T Consensus 92 ----------~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 92 ----------LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred ----------CCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 678999999999999999999988666 568889999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
..+...|.+++|+|+|++|++++ |.|++||+++++.+.++.+|..+|.+++|+|++++|++++ .|+.|++||++..+
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHAN 239 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence 99999999999999999999998 8999999999999999999999999999999999999987 79999999998875
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
. ...+..+...+..+.|+ |++.+|++++.||+|++||+.+++.+.
T Consensus 240 ~-----~~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~------------------------- 284 (321)
T 3ow8_A 240 L-----AGTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH------------------------- 284 (321)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred e-----eEEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE-------------------------
Confidence 3 34555666667788888 999999999999999999987664322
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+.+|...|.+++|+|||.+| ++++.|+++++|+.
T Consensus 285 ------------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 285 ------------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC 319 (321)
T ss_dssp ------------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred ------------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence 233677789999999999999 99999999999986
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.5e-40 Score=351.54 Aligned_cols=347 Identities=17% Similarity=0.183 Sum_probs=262.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCcccccccccccccc-------------------
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLE------------------- 60 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------- 60 (579)
++.+| .+++|||||++||+|+.||+|+|||+.++ .....+.+|...+..+.|+++-.
T Consensus 58 h~~~v--~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 58 HSHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred CCCce--EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 35678 55599999999999999999999998754 35667888988999888887610
Q ss_pred --------ccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE
Q 008041 61 --------REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI 132 (579)
Q Consensus 61 --------~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 132 (579)
.+| ...+.++.|.|.. ...+++|+.|+.|++||..++++...+ .+|...|++++|+|+|++|
T Consensus 136 ~~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 136 TGTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLF 205 (611)
T ss_dssp TCCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEE
T ss_pred CCCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEE
Confidence 011 1133445554432 346999999999999999998887655 7899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeEee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE---------
Q 008041 133 YSAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--------- 194 (579)
Q Consensus 133 ~s~~~d~~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~--------- 194 (579)
++++.|++|++||+.+++.+..+. +|.+.|.+++|+|+|++|++++ ++|++||+++++++.+
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 999999999999999999888884 7999999999999999999998 8999999998765443
Q ss_pred ----------------------------------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce--
Q 008041 195 ----------------------------------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-- 238 (579)
Q Consensus 195 ----------------------------------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~-- 238 (579)
+.+|...|.+++|+|+|++|++++ .|++|++||+.++......
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSC
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeeccc
Confidence 357899999999999999999998 7999999998765321000
Q ss_pred ----eee-------------------------------------e---------eec-----------------------
Q 008041 239 ----CVL-------------------------------------A---------MEH----------------------- 245 (579)
Q Consensus 239 ----~~~-------------------------------------~---------~~~----------------------- 245 (579)
.+. . +..
T Consensus 365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~ 444 (611)
T 1nr0_A 365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 444 (611)
T ss_dssp SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence 000 0 000
Q ss_pred --CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee--cccCCeeEEeeeccCCcccccccchhhhhccccc
Q 008041 246 --PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (579)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (579)
+...+.++.|+ |||++|++|+.||+|++||+.++... .. ..+...+.+.. |+|+++ .+++++.|+
T Consensus 445 ~~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~-fspdg~----~las~s~d~ 513 (611)
T 1nr0_A 445 VPISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA-FSNNGA----FLVATDQSR 513 (611)
T ss_dssp EECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-ECTTSS----EEEEEETTS
T ss_pred eecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-ECCCCC----EEEEEcCCC
Confidence 01123455666 99999999999999999998775431 11 11111122222 788888 889999877
Q ss_pred eecCCceEEEEEeCCCCCceeEE--EecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 322 IVKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.++.++. ......... ..+|...|.+++|||||++| +|+|.|+++++|++.
T Consensus 514 ~v~~w~~-------~~~~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 514 KVIPYSV-------ANNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN 566 (611)
T ss_dssp CEEEEEG-------GGTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred CEEEEEc-------CCCCceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECC
Confidence 6555431 110111111 23499999999999999999 999999999999985
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.1e-40 Score=327.33 Aligned_cols=282 Identities=15% Similarity=0.195 Sum_probs=239.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| .+++|+||+++||+|+.||+|+|||..++.....+..+...+....|+++
T Consensus 63 H~~~V--~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~----------------------- 117 (354)
T 2pbi_B 63 HGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS----------------------- 117 (354)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-----------------------
T ss_pred CCCeE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-----------------------
Confidence 45778 66699999999999999999999999999988888766665555555554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCe------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+..+++|+.|+.+++|++.... .. ....+|...|.++.|+|++..+++++.|++|++||+.+++.+..+
T Consensus 118 ----g~~lasg~~d~~i~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 118 ----GCAIACGGLDNKCSVYPLTFDKNENMAAKK-KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp ----SSEEEEESTTSEEEEEECCCCTTCCSGGGC-EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----CCEEEEeeCCCCEEEEEEeccccccccccc-eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 7889999999999999986531 12 223579999999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 156 RASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 156 ~~~~~~v~~l~~~p--~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
.+|...|.+++|+| +|++|++|+ |.|++||+++++++..+.+|...|.+++|+|++.+|++++ .|++|++||++.
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~ 271 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA 271 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence 99999999999988 578999988 9999999999999999999999999999999999999988 799999999988
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccc
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (579)
.+.. ..+........+..+.|+ |++.+|++++.||.|++||+.+++.+.
T Consensus 272 ~~~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~~----------------------- 320 (354)
T 2pbi_B 272 DREV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRVS----------------------- 320 (354)
T ss_dssp TEEE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEEE-----------------------
T ss_pred CcEE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceEE-----------------------
Confidence 7532 222222223345677787 999999999999999999986654321
Q ss_pred hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus 321 --------------------------------~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 --------------------------------ILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA 354 (354)
T ss_dssp --------------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred --------------------------------EEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence 234688899999999999999 9999999999995
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.2e-39 Score=347.92 Aligned_cols=325 Identities=14% Similarity=0.151 Sum_probs=257.0
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..+| .+++|+|++. .|++|+.|++|++||..++++...+.+|...+.++.|+++
T Consensus 147 ~~~v--~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----------------------- 201 (611)
T 1nr0_A 147 ARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----------------------- 201 (611)
T ss_dssp SSCE--EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred CCCc--eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-----------------------
Confidence 4577 5559999997 5999999999999999999999999988887777777766
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecC------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~- 154 (579)
+.+|++|+.||.|++||+.+++.+..+.. +|.+.|++++|+|+|++|++++.|++|++||+.+++++.+
T Consensus 202 ----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 202 ----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 78899999999999999999988766633 7999999999999999999999999999999988765443
Q ss_pred ------------------------------------------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008041 155 ------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (579)
Q Consensus 155 ------------------------------------------~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~ 190 (579)
+.+|...|++++|+|+|++|++++ +.|++||+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 346888999999999999999998 899999998765
Q ss_pred eeEEe-e-------------------------------------------------------------------------
Q 008041 191 KMQKF-S------------------------------------------------------------------------- 196 (579)
Q Consensus 191 ~~~~~-~------------------------------------------------------------------------- 196 (579)
....+ .
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 43221 0
Q ss_pred --------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041 197 --------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 197 --------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
.|...+.+++|+|||+++++++ .|++|++||+...... ..... .+...+..+.|+ |+|++|+
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~~-~h~~~v~~v~fs-----pdg~~la 507 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTI-VHPAEITSVAFS-----NNGAFLV 507 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEE-ECSSCEEEEEEC-----TTSSEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeecc-CCCCceEEEEEC-----CCCCEEE
Confidence 1234567899999999999988 7999999999875422 22233 344556778888 9999999
Q ss_pred EEEcCCeEEEEEcCC-ceeecc--cCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE
Q 008041 269 AISETGVCYIWYGQN-IEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (579)
Q Consensus 269 ~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (579)
+++.|++|++||+.+ ++.+.. ...+...+.+.. |+|+++ .+++++.|+.++.++. . .........+
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~----~lasgs~D~~v~lW~~-----~-~~~~~~~~~~ 576 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNV----RLATGSLDNSVIVWNM-----N-KPSDHPIIIK 576 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSS----EEEEEETTSCEEEEET-----T-CTTSCCEEET
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCC----EEEEEECCCcEEEEEC-----C-Ccccccchhh
Confidence 999999999999987 554432 111222333333 788888 8999999886665431 1 1011112445
Q ss_pred ecC-CCCcEEEeecCCcceeeccccceecccceee
Q 008041 346 LVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 346 ~~h-~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.+| ...|.+++|+|||+ | +|++.|+++++|++
T Consensus 577 ~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV 609 (611)
T ss_dssp TSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred ccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence 678 78999999999999 8 99999999999987
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-38 Score=309.54 Aligned_cols=280 Identities=13% Similarity=0.208 Sum_probs=234.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.+| .+++|+|+|++|++|+.||+|+|||+.++.....+..|...+....|+++
T Consensus 13 ~~~V--~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 66 (304)
T 2ynn_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------------------------ 66 (304)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC------------------------
Confidence 4678 55599999999999999999999999999999988877766665555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
+.++++|+.|+.|++||+.+++.+..+ .+|.+.|++++|+|+++++++|+.|++|++||++++ .....+.+|...
T Consensus 67 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred ---CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 788999999999999999999988666 689999999999999999999999999999999887 455678999999
Q ss_pred eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 162 v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|.+++|+| ++..+++|+ +.|++||++++.....+. +|...+..+.|+| ++++|++++ .|++|++||+++++
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~-- 219 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS-- 219 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE--
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc--
Confidence 99999999 678899988 899999999887766554 5668899999986 678999988 79999999999875
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
++..+..+...+..+.|+ |++.+|++++.||+|++||..+++.+.
T Consensus 220 ---~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~~~--------------------------- 264 (304)
T 2ynn_A 220 ---CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEK--------------------------- 264 (304)
T ss_dssp ---EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCEEE---------------------------
T ss_pred ---cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCceee---------------------------
Confidence 445666677777888887 999999999999999999987765432
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc--eeeccccceecccceeee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV--LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~~s~s~d~~~~~w~~~ 380 (579)
.+..|...+.+++|+|+|. ++ ++|+.|+ +.+|+++
T Consensus 265 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~-asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 265 ----------------------------TLNVGLERSWCIATHPTGRKNYI-ASGFDNG-FTVLSLG 301 (304)
T ss_dssp ----------------------------EECCSSSSEEEEEECTTCGGGCE-EEEETTE-EEEEECC
T ss_pred ----------------------------eccCCCccEEEEEECCCCCceEE-EEecCCc-eEEEEec
Confidence 2234556788999888875 45 7776554 5666663
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.1e-38 Score=307.83 Aligned_cols=287 Identities=15% Similarity=0.141 Sum_probs=236.0
Q ss_pred CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++++| .+++|+|++ ++|++|+.|++|++||+.+ +..+..+.+|...+..+.|+++
T Consensus 16 H~~~V--~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------------- 76 (319)
T 3frx_A 16 HNGWV--TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD----------------- 76 (319)
T ss_dssp CSSCE--EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred ccceE--EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-----------------
Confidence 46788 555999965 8999999999999999863 3456677777776666666655
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.++++|+.|++|++||++ ++++..+
T Consensus 77 ----------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 77 ----------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred ----------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 788999999999999999999988666 6899999999999999999999999999999985 6778888
Q ss_pred ecCCCCeeEEEEccCC------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 156 RASTKGISCMAVSSDG------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g------~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
.+|...|.++.|+|.+ ..+++++ +.|++||+++++....+.+|...|.+++|+|++++|++++ .|+.|++|
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iw 223 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW 223 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEE
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Confidence 9999999999999954 4788887 8999999999999999999999999999999999999988 79999999
Q ss_pred EcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccc
Q 008041 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (579)
|+.+.+. +..+.++. .+..+.|+ |++.+|++++.+ .+++|+++....+....+. .
T Consensus 224 d~~~~~~-----~~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~-------------~ 278 (319)
T 3frx_A 224 NLAAKKA-----MYTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE-------------F 278 (319)
T ss_dssp ETTTTEE-----EEEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECCC-------------C
T ss_pred ECCCCcE-----EEEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc-------------c
Confidence 9998763 34444443 45677787 999999888754 5999998766544322110 0
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
. + ....|...+.+++|+|||++| ++|+.|+.+++|++.
T Consensus 279 ~------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 279 A------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp T------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred c------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 0 0 001355678899999999999 999999999999985
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=316.79 Aligned_cols=290 Identities=11% Similarity=0.086 Sum_probs=223.9
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| -+++|||||++|++++ |+++++||.. +..+.............. .......+.++.|.+
T Consensus 31 ~~v--~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~-------- 92 (344)
T 4gqb_B 31 RQL--EAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNEGFCSA---GVQTEAGVADLTWVG-------- 92 (344)
T ss_dssp SEE--EEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCGGGCSE---EEEESSCEEEEEEET--------
T ss_pred CCE--EEEEECCCCCEEEEEe-CCceEEeece----eeeeccccccCCcceeee---eeccCCCEEEEEEeC--------
Confidence 456 4559999999999888 7889999732 122221111000000000 001123577888876
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
...+++|+.||.|++||+.+++.... ...+|.+.|++++|+|+|++|++|+.|++|++||+.+++++..+.+|..
T Consensus 93 --d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 --ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp --TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred --CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 34689999999999999998875322 2358999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCcc
Q 008041 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 ~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
.|++++|+|++. ++++++ +.|++||+++++....+. .|...+.+++|+|++ +++++++ .|+.|++||+++++.
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC 249 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence 999999999985 677776 899999999999888774 456679999999954 5677776 799999999998764
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchh
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (579)
+..+..+...+.++.|+ |++ ++|++++.||+|++||..+++.+
T Consensus 250 -----~~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~-------------------------- 293 (344)
T 4gqb_B 250 -----VLSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF-------------------------- 293 (344)
T ss_dssp -----CEEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred -----EEEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence 35566667778888888 887 57999999999999997655321
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.+|...|.+++|+|||..+.+|+|.|+++++|++.
T Consensus 294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 1236888999999999998654899999999999984
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1e-37 Score=306.25 Aligned_cols=281 Identities=21% Similarity=0.301 Sum_probs=236.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++|++|+.||.|+||+..+++....+.+|...+..+.|+++
T Consensus 22 h~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 76 (312)
T 4ery_A 22 HTKAV--SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----------------------- 76 (312)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred cCCcE--EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-----------------------
Confidence 35678 55599999999999999999999999999998888877665555555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++|+.||.|++||+.+++.+..+ .+|...|.++.|+|+++++++|+.|+.|++||+++++.+..+..|..+
T Consensus 77 ----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 77 ----SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ----CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 788999999999999999999987666 679999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
|.+++|+|+++++++++ |.|++||+++++.+..+. .+..++..++|+|+++++++++ .|+.|++||+.+++..
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--- 227 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL--- 227 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 99999999999999998 899999999998887764 5667899999999999999987 7999999999987633
Q ss_pred eeeeeecCc---eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhh
Q 008041 239 CVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (579)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (579)
..+..+. ..+...... +++.+|++++.||.|++||+.+++.+.
T Consensus 228 --~~~~~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------------- 273 (312)
T 4ery_A 228 --KTYTGHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ--------------------------- 273 (312)
T ss_dssp --EEECSSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE---------------------------
T ss_pred --EEEEecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh---------------------------
Confidence 2332221 122223333 678999999999999999987654321
Q ss_pred hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc--ceecccceee
Q 008041 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (579)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (579)
.+.+|...|.+++|+|++.++ ++++ .|+++++|+.
T Consensus 274 ----------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 ----------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS 310 (312)
T ss_dssp ----------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred ----------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence 344688899999999999999 7775 6999999975
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=312.30 Aligned_cols=294 Identities=14% Similarity=0.163 Sum_probs=229.2
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE---eccCccccccccccccccccccccccceEEeeecccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+| .+++|+|+|++||+|+.|++|+|||+.++..... ..+|...+. ++.|.|.
T Consensus 18 ~v--~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~------------------~~~~sp~----- 72 (345)
T 3fm0_A 18 RC--WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR------------------KVAWSPC----- 72 (345)
T ss_dssp CE--EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE------------------EEEECTT-----
T ss_pred cE--EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE------------------EEEECCC-----
Confidence 67 5669999999999999999999999988864322 234444444 4555442
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeec
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRA 157 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~ 157 (579)
+.+|++|+.|+.|++||...+.. ....+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+.+
T Consensus 73 ----g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 73 ----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp ----SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred ----CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 78899999999999999987753 223447899999999999999999999999999999998763 4567888
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
|...|.+++|+|++++|++++ +.|++||.++++ +..++.+|...|.+++|+|+|++|++++ .|++|++|+.....
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPG 227 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCC
Confidence 999999999999999999998 899999998875 4578899999999999999999999988 79999999974332
Q ss_pred cc----------cceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041 234 KQ----------SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 234 ~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
.. ...++..+. .+...+..+.|+ |++..|++++.|+.|++|+......... +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~--~---------- 290 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQ--P---------- 290 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTS--C----------
T ss_pred CCccceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCcce--e----------
Confidence 11 011222332 244556677787 9999999999999999999764421100 0
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccceeee
Q 008041 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~ 380 (579)
. . .. ......+|...|.+++|+|++. +| +|||.|+++++|++.
T Consensus 291 ---~------~---------------~~----------~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 291 ---T------F---------------SL----------TAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQ 334 (345)
T ss_dssp ---C------E---------------EE----------EEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEEC
T ss_pred ---e------E---------------EE----------EeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEec
Confidence 0 0 00 0001236888999999999985 77 999999999999984
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.3e-39 Score=323.90 Aligned_cols=289 Identities=16% Similarity=0.230 Sum_probs=240.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| .+++|+|+|++|++|+.||+|+|||..+++....+..|...+..+.|+++
T Consensus 65 H~~~V--~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 119 (380)
T 3iz6_a 65 HSGKV--YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN----------------------- 119 (380)
T ss_dssp CSSCE--EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-----------------------
T ss_pred cccEE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-----------------------
Confidence 45788 55699999999999999999999999999999999888877777777766
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
+.++++|+.|+.|++||+.+... ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..
T Consensus 120 ----g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 120 ----GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp ----SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred ----CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 88899999999999999975321 223457899999999999974 5699999999999999999998887
Q ss_pred e-----ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 155 F-----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 155 ~-----~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
+ .+|...|.+++|+| +++++++|+ +.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ .|++|+
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~ 274 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCR 274 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence 7 57888999999987 889999988 899999998 4577889999999999999999999999987 799999
Q ss_pred EEEcCCCccccceeeeeee-----cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeec
Q 008041 226 LWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (579)
+||+++++.. ..+... .....+..+.|+ |+|++|++|+.||.|++||..+++.+.....
T Consensus 275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------- 338 (380)
T 3iz6_a 275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-------- 338 (380)
T ss_dssp EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred EEECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEec--------
Confidence 9999987643 111111 112235677887 9999999999999999999876654321100
Q ss_pred cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
...+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus 339 -------------------------------------------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 339 -------------------------------------------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------------------------------------------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECC
T ss_pred -------------------------------------------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecC
Confidence 012688899999999999999 999999999999984
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-37 Score=331.49 Aligned_cols=314 Identities=20% Similarity=0.262 Sum_probs=263.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|+|++|++++.|+.|++||. +++....+.+|...+..+.|+++
T Consensus 262 ~~~v--~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~------------------------ 314 (577)
T 2ymu_A 262 SSSV--NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------ 314 (577)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC------------------------
Confidence 4567 45599999999999999999999996 57777788877776666666655
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++++.+|.|++||....... .+ .+|...|.+++|+|+|+++++++.|+.|++||. +++.+..+.+|...|
T Consensus 315 ---~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 315 ---GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 388 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence 788999999999999998766543 33 679999999999999999999999999999994 688889999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|+|++|++++ +.|++||. +++.+.++.+|...|.+++|+|++++|++++ .|+.|++||.... ..
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~------~~ 460 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ------LL 460 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC------EE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC------EE
Confidence 9999999999999987 89999995 6778889999999999999999999999988 7999999996543 23
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
..+..+...+.++.|+ |++++|++++.|+.|++||. +++.+..+..+...+.+.. |+|+++ .+++++.|
T Consensus 461 ~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~-~s~dg~----~l~s~~~d 529 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD 529 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSS----CEEEEETT
T ss_pred EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE-EcCCCC----EEEEEECc
Confidence 4455566677888888 99999999999999999995 5666655544433333333 688887 88999988
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
+.++.++ ........+.+|...|.+++|+|||++| +|+|.|+++++|+
T Consensus 530 g~v~lwd---------~~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 530 KTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577 (577)
T ss_dssp SEEEEEC---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred CEEEEEe---------CCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence 7666543 2345677888999999999999999999 9999999999996
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-37 Score=313.73 Aligned_cols=302 Identities=16% Similarity=0.230 Sum_probs=235.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccc-ccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSL-YGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|||||++||+|+ +++++||++.+++.+..+..+........ +... ........+.++.|.+.
T Consensus 63 h~~~V--~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~s~d---- 134 (393)
T 1erj_A 63 HTSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS-SSPSSDLYIRSVCFSPD---- 134 (393)
T ss_dssp CSSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTT----
T ss_pred CCCEE--EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccccccccc-ccCCCceeEEEEEECCC----
Confidence 35678 5569999999999987 78999999999999888765542211000 0000 00011223667888764
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++||++++++...+. +..
T Consensus 135 -----g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 135 -----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp -----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred -----CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 778999999999999999999887665 6899999999999999999999999999999999999888776 556
Q ss_pred CeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEe-------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 161 ~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
.+.+++|+| +++++++++ +.|++||+++++.+..+ .+|...|.+++|+|++++|++++ .|+.|++||++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~ 286 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQ 286 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC-
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECC
Confidence 899999999 899999998 89999999999887776 57999999999999999999988 79999999998
Q ss_pred CCccc-------cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCC
Q 008041 231 GVKKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (579)
Q Consensus 231 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (579)
..... ...+...+..+...+..+.++ |++.+|++++.||.|++||..+++.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~--------------- 346 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL--------------- 346 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE---------------
Confidence 65321 012334444555566777787 899999999999999999987654321
Q ss_pred cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC------Ccceeeccccceecccce
Q 008041 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~~s~s~d~~~~~w 377 (579)
.+.+|...|.+++|++ ++.++ +|||.|+++++|
T Consensus 347 ----------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW 385 (393)
T 1erj_A 347 ----------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIW 385 (393)
T ss_dssp ----------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEE
T ss_pred ----------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEEC
Confidence 2346777788888775 78899 999999999999
Q ss_pred eee
Q 008041 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
++.
T Consensus 386 ~~~ 388 (393)
T 1erj_A 386 KYK 388 (393)
T ss_dssp EEE
T ss_pred ccc
Confidence 985
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-38 Score=317.51 Aligned_cols=285 Identities=12% Similarity=0.106 Sum_probs=219.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeC------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++++|+ +++|||||++||+|+. |+.|++|+..++.....+... ..+| ...+.++.|.+
T Consensus 41 H~~~V~--~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------~~~~-~~~V~~~~~s~ 104 (357)
T 4g56_B 41 MEVQIG--AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------GVQT-EAGVTDVAWVS 104 (357)
T ss_dssp CCSEEE--EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------EEEC-SSCEEEEEEET
T ss_pred ccCCEE--EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------cCCC-CCCEEEEEEcC
Confidence 356684 4599999999999997 678889988776543222100 0112 23467788876
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 152 (579)
. ..+++++.+|.|++||+.+++.... ...+|...|++++|+|++++|++|+.|+.|++||+.+++.+
T Consensus 105 d----------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 105 E----------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp T----------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred C----------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3 3467889999999999998875321 22479999999999999999999999999999999999999
Q ss_pred eEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCC-CEEEEEecCCCeEEE
Q 008041 153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNG-KYVLSSAVGERYIAL 226 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~-~~l~s~~~~d~~i~v 226 (579)
..+.+|...|++++|+|++. ++++++ +.|++||+++++.+..+ ..|...+.+++|+|++ .+|++++ .|+.|++
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~ 253 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSL 253 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeE
Confidence 99999999999999999885 666666 89999999998876654 4567889999999985 5666666 7999999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcc
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
||+++++.. ..+..+...+.++.|+ |++ ++|++++.||+|+|||+++++.+.
T Consensus 254 wd~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~~----------------- 306 (357)
T 4g56_B 254 VNIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVFR----------------- 306 (357)
T ss_dssp EESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEEE-----------------
T ss_pred EECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEeE-----------------
Confidence 999987643 4555666677788887 876 579999999999999987654321
Q ss_pred cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceecccceeee
Q 008041 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+|...|.+++|+| ||.+| +|+|.|+++++|++.
T Consensus 307 ---------------------------------------~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 ---------------------------------------DLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP 342 (357)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred ---------------------------------------ECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence 125788999999998 89999 999999999999984
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-36 Score=299.68 Aligned_cols=292 Identities=14% Similarity=0.132 Sum_probs=226.4
Q ss_pred CCCcccceEEEE-----cc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCcccccccccccccccccccccc
Q 008041 2 GSSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDY 68 (579)
Q Consensus 2 ~~~~V~~l~~~f-----sp-dg~~lasg~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (579)
++++| .+++| +| |+++|++|+.|++|+|||+.++ .....+.+|...+.++.|+++
T Consensus 20 H~~~V--~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---------- 87 (343)
T 2xzm_R 20 HSDWV--TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---------- 87 (343)
T ss_dssp CSSCE--EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----------
T ss_pred chhhh--hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----------
Confidence 45778 44488 76 9999999999999999998753 455666666665555555544
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008041 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~ 148 (579)
+.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|+++++++++.|++|++||+.
T Consensus 88 -----------------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~- 148 (343)
T 2xzm_R 88 -----------------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL- 148 (343)
T ss_dssp -----------------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-
T ss_pred -----------------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-
Confidence 788999999999999999999987666 6899999999999999999999999999999987
Q ss_pred CceeeEee---cCCCCeeEEEEccCC----------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCE
Q 008041 149 GSLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 149 ~~~~~~~~---~~~~~v~~l~~~p~g----------~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 213 (579)
+....... .|...|.+++|+|++ .++++++ +.|++|| .+.+....+.+|...|.+++|+|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 43333333 678899999999987 6888887 9999999 456777889999999999999999999
Q ss_pred EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 214 l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
|++++ .|+.|++||+...... ...+.+. ..+..+.|+ |++.++++ +.|+.|++||+.+++.....
T Consensus 228 l~sgs-~dg~v~iwd~~~~~~~----~~~~~~~-~~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~--- 292 (343)
T 2xzm_R 228 IATGG-KDKKLLIWDILNLTYP----QREFDAG-STINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC--- 292 (343)
T ss_dssp EEEEE-TTCEEEEEESSCCSSC----SEEEECS-SCEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE---
T ss_pred EEEEc-CCCeEEEEECCCCccc----ceeecCC-CcEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE---
Confidence 99998 7999999999544322 1222222 336778887 89887764 56888999998876543200
Q ss_pred eEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008041 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (579)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (579)
.. ... .+. . .....+|...+.+++|+|||.+| ++|+.|++
T Consensus 293 --~~------~~~------~~~--~-----------------------~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~ 332 (343)
T 2xzm_R 293 --TI------EAE------PIT--K-----------------------AEGQKGKNPQCTSLAWNALGKKL-FAGFTDGV 332 (343)
T ss_dssp --EC------CCC------SGG--G-----------------------BTTBCCSCCCEEEEEECSSSCCE-EEEETTSE
T ss_pred --Ee------ecC------cch--h-----------------------hhhhcCCCCceEEEEECCCCCeE-EEecCCce
Confidence 00 000 000 0 00123577789999999999999 99999999
Q ss_pred ccceeee
Q 008041 374 KRGRYVQ 380 (579)
Q Consensus 374 ~~~w~~~ 380 (579)
+++|++.
T Consensus 333 v~~w~~~ 339 (343)
T 2xzm_R 333 IRTFSFE 339 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999985
No 17
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-37 Score=312.95 Aligned_cols=339 Identities=15% Similarity=0.233 Sum_probs=255.3
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEeccCccccccccccccccccccccccceE
Q 008041 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++| .+++|+|+|+ +||+|+.||.|++||+ .+++ ....+....... ...++....++++
T Consensus 45 ~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 45 LDNI--VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS--------ASSGKTTNQVTCL 114 (425)
T ss_dssp CSCC--SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEE
T ss_pred cCce--EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc--------ccccCCCCceEEE
Confidence 3678 5559999999 9999999999999999 8887 344433210000 0001123467777
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008041 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 151 (579)
.|.+. +.+|++|+.+|.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 115 ~~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 115 AWSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp EECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred EEcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 88763 78899999999999999 566666555 67999999999999999999999999999999999999
Q ss_pred eeEeecCCCC---------------eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041 152 LGKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 152 ~~~~~~~~~~---------------v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
+..+..+... +.+++|+|++.+++.+. |.|++||+++++.+..+.+|...|.+++|+|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 9988877776 99999999876444444 9999999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
+++ .|+.|++||+...+.. ..+..+...+..+.|+ |++ ++++++.||.|++||+.+++.+........
T Consensus 264 ~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 264 SAS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp EEE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred EEc-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence 987 7999999999987643 3444455567778887 888 999999999999999999887765544332
Q ss_pred EeeeccCCcccccccchhhhhccccceecCCceEEEE-----EeCC-------CCCceeEEEecCCC--CcEEEeecCCc
Q 008041 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYGL-------LLKPSFQKILVNSG--EDINLNCSQDG 361 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~g~-------~~~~~~~~~~~h~~--~v~~~~~s~dg 361 (579)
.+.+.. ++++++ .+++++.++.++.++..-.. ..+. ........+.+|.. .|.+++|+|||
T Consensus 332 ~i~~~~-~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 332 PIFAGR-ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp CEEEEE-ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred cEEEEE-EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence 222222 566766 78888887765554321000 0000 00125667788876 99999999999
Q ss_pred ceeeccccceecccceeee
Q 008041 362 VLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 362 ~~l~~s~s~d~~~~~w~~~ 380 (579)
.+| ++++.|+.+++|++.
T Consensus 407 ~~l-~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 407 NKI-SVAYSLQEGSVVAIP 424 (425)
T ss_dssp SEE-EEEESSSCCEEEECC
T ss_pred ceE-EEEecCceEEEEeec
Confidence 999 999999999999873
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-36 Score=298.60 Aligned_cols=287 Identities=14% Similarity=0.144 Sum_probs=214.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cc-CccccccccccccccccccccccceEEeeecc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEF-AD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
++++| .+++|+|+ +||+|+.|++|++||+.++ .....+ .+ |...+. ++.|.|.
T Consensus 13 h~~~v--~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~------------------~v~~sp~- 69 (330)
T 2hes_X 13 YKEKI--WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR------------------SVAWRPH- 69 (330)
T ss_dssp CSSCE--EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE------------------EEEECTT-
T ss_pred CCCce--eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE------------------EEEECCC-
Confidence 45788 55599987 9999999999999999875 344444 22 444444 4455442
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccC-------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--
Q 008041 78 RKKKRKLGSSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-- 148 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-- 148 (579)
+.+|++|+.|+.|++||+.. .+.. ..+.+|...|++++|+|+|++|++|+.|++|++||+..
T Consensus 70 --------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 70 --------TSLLAAGSFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp --------SSEEEEEETTSCEEEEEC-------CCCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred --------CCEEEEEeCCCcEEEEEcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 78899999999999999853 2333 33478999999999999999999999999999999943
Q ss_pred --CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEecC--CCEEEEEecC
Q 008041 149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG 220 (579)
Q Consensus 149 --~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~~ 220 (579)
.+++..+.+|...|.+++|+|++++|++++ +.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ .
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~ 219 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-D 219 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-T
T ss_pred CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-C
Confidence 256778899999999999999999999998 89999999876 678889999999999999998 66888887 7
Q ss_pred CCeEEEEEcCCCcccc---ceeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEE
Q 008041 221 ERYIALWRTDGVKKQS---ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (579)
|++|++||+....... ..+...+.. +...+..+.|+ +++ +|++++.||.|++||..+++..
T Consensus 220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~-~l~s~~~dg~v~iw~~~~~~~~--------- 284 (330)
T 2hes_X 220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FNG-LIASVGADGVLAVYEEVDGEWK--------- 284 (330)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TTS-CEEEEETTSCEEEEEEETTEEE---------
T ss_pred CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CCC-EEEEEeCCCEEEEEEcCCCceE---------
Confidence 9999999987642110 112223322 45566777786 554 7999999999999996543210
Q ss_pred eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC-CcEEEeecC--Ccceeeccccceec
Q 008041 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKS 373 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~--dg~~l~~s~s~d~~ 373 (579)
.. .....+|.. .|.+++|+| ||.+| +|||.|++
T Consensus 285 ~~-------------------------------------------~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~ 320 (330)
T 2hes_X 285 VF-------------------------------------------AKRALCHGVYEINVVKWLELNGKTIL-ATGGDDGI 320 (330)
T ss_dssp EE-------------------------------------------EEESCTTTTSCEEEEEEC-----CCE-EEEETTSE
T ss_pred EE-------------------------------------------eccccccccceEEEEEEecCCCceEE-EEecCCCc
Confidence 00 001124665 789999999 78999 99999999
Q ss_pred ccceeee
Q 008041 374 KRGRYVQ 380 (579)
Q Consensus 374 ~~~w~~~ 380 (579)
+++|++.
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999974
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.2e-36 Score=319.41 Aligned_cols=316 Identities=21% Similarity=0.249 Sum_probs=259.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|||++|++++.|+.|++||. +++.+..+.+|...+..+.|+++
T Consensus 221 ~~~v--~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d------------------------ 273 (577)
T 2ymu_A 221 SSSV--RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD------------------------ 273 (577)
T ss_dssp SSCE--EEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC------------------------
Confidence 4667 45599999999999999999999996 57778888877776666666555
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++++.++.|++||.. ++....+ .+|...|++++|+|+++++++++.|+.|++||+. +..+..+.+|...+
T Consensus 274 ---~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 274 ---GQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV 347 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence 7889999999999999975 4444344 6899999999999999999999999999999975 56677888899999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|+|+++++++ +.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||.... ..
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~------~~ 419 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ------LL 419 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC------EE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC------EE
Confidence 9999999999999988 89999995 6778889999999999999999999999988 7999999996432 23
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
..+..+...+..+.|+ |++++|++++.||.|++||.. ++.+....+....+.+.. ++++++ .+++++.|
T Consensus 420 ~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~-~spd~~----~las~~~d 488 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD 488 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE-ECTTSC----EEEEEETT
T ss_pred EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE-EcCCCC----EEEEEeCC
Confidence 4455556667778887 999999999999999999964 444444433333333322 678877 88888887
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+.++.++ ........+.+|...|.+++|+|||++| ++++.|+++++|+..
T Consensus 489 ~~i~iw~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 489 KTVKLWN---------RNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN 538 (577)
T ss_dssp SEEEEEE---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred CEEEEEc---------CCCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence 7655432 2345667888999999999999999999 999999999999974
No 20
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=292.28 Aligned_cols=239 Identities=21% Similarity=0.316 Sum_probs=214.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|++.++++|+.|++|++||+.+++.+..+..+...+..+.|+++
T Consensus 80 ~~~v--~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd------------------------ 133 (321)
T 3ow8_A 80 QLGV--VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD------------------------ 133 (321)
T ss_dssp SSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC------------------------
Confidence 4567 56699999999999999999999999999999888766655555555554
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+.++++|+.+|.|++||+.+++....+ ..|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|..+|
T Consensus 134 ---g~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 134 ---SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp ---SSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence 788999999999999999999887665 5688899999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
.+++|+|++++|++++ +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||+.+++ ++
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~-----~~ 283 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRT-----CV 283 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE-----EE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCE-----EE
Confidence 9999999999999998 8999999999999999999999999999999999999988 79999999998876 34
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
..+..+...+..+.|+ |++.+|++++.||+|++||.+
T Consensus 284 ~~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence 5555566667788887 999999999999999999963
No 21
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-35 Score=300.87 Aligned_cols=239 Identities=18% Similarity=0.255 Sum_probs=214.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| .+++|+|+|++|++|+.||+|+|||+.+++++..+.+|...+.++.|+++
T Consensus 149 h~~~V--~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~----------------------- 203 (410)
T 1vyh_C 149 HTDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN----------------------- 203 (410)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC-----------------------
Confidence 45678 55599999999999999999999999999999988877766666555554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+.++++|+.|+.|++||+.++.++..+ .+|...|.++.|+|++.++++|+.|++|++||+.++++...+.+|...
T Consensus 204 ----~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~ 278 (410)
T 1vyh_C 204 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278 (410)
T ss_dssp ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence 788999999999999999999988666 689999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccC--------------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041 162 ISCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 162 v~~l~~~p~--------------------g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
|.+++|+|+ |.++++|+ +.|++||+++++++.++.+|...|.+++|+|++++|++++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s- 357 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA- 357 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-
Confidence 999999996 66899888 8999999999999999999999999999999999999988
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.|+.|++||+.+++. +..+..+...+.++.|+ |++.+|++|+.||+|++|++
T Consensus 358 ~D~~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRC-----MKTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSCC-----CEEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCce-----EEEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence 799999999987763 34555666677888888 99999999999999999985
No 22
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-36 Score=310.26 Aligned_cols=321 Identities=13% Similarity=0.130 Sum_probs=242.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++|+|+|++|++|+.||.|++||..+++....+..+ ...++.+++.+ +.+++
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~--------~~~l~ 113 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--------------------DYTAVDTAKLQ--------MRRFI 113 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--------------------CEEEEEEECSS--------SCEEE
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--------------------CceEEEEEecC--------CCEEE
Confidence 499999999999999999999999876543322211 22333333332 77899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (579)
+|+.+|.|++||+.+++....+ .+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 114 ~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 114 LGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999999999999998886544 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEE---------------------EecCCCEEEEEecCCCeE
Q 008041 171 GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~---h~~~v~~l~---------------------~s~~~~~l~s~~~~d~~i 224 (579)
+++|++++ +.|++||+++++.+..+.. |...+.++. |+|+++++++++ .|+.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 271 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVI 271 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCE
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeE
Confidence 99999988 8999999999999988875 344455554 568899999887 79999
Q ss_pred EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCcee-ecccCC-eeEEeeecc
Q 008041 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTKA-TKILSSSED 301 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~ 301 (579)
++||+++++.. . .....+...+.++.|+ |++. +|++++.||.|++||+.+++. +..... ....+.+.
T Consensus 272 ~i~d~~~~~~~---~-~~~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~- 341 (420)
T 3vl1_A 272 TVHNVFSKEQT---I-QLPSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV- 341 (420)
T ss_dssp EEEETTTCCEE---E-EECCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred EEEECCCCcee---E-EcccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence 99999887633 1 1223345567778887 8988 999999999999999988743 222211 11111111
Q ss_pred CCcccccccchhhhhccccceecCCceEEEEEeCCCC-----CceeEEEecCCCCcEEEeecCCcc---eeeccccceec
Q 008041 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-----KPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKS 373 (579)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~ 373 (579)
+.++++ .+++++.|+.++.++.. .+... ......+..|...+.+++|+|||. .+ ++.+.++.
T Consensus 342 -~~~~~~----~l~s~~~d~~v~iw~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~ 411 (420)
T 3vl1_A 342 -YFAAGA----LFVSSGFDTSIKLDIIS----DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNF 411 (420)
T ss_dssp -EEETTE----EEEEETTTEEEEEEEEC----CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTE
T ss_pred -EeCCCC----EEEEecCCccEEEEecc----CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEcCCce
Confidence 133444 78888887755554311 11111 122334667888999999999999 66 44445889
Q ss_pred ccceeeee
Q 008041 374 KRGRYVQN 381 (579)
Q Consensus 374 ~~~w~~~~ 381 (579)
+.+|++.+
T Consensus 412 ~~~~~~~~ 419 (420)
T 3vl1_A 412 CALYNLSN 419 (420)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 99998853
No 23
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-35 Score=292.71 Aligned_cols=319 Identities=11% Similarity=0.058 Sum_probs=246.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|||||++++++..++.+.+|+...........+|...+.++.|+++
T Consensus 9 ~~~v--~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------------ 62 (337)
T 1gxr_A 9 SKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP------------------------ 62 (337)
T ss_dssp EEEC--CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSS------------------------
T ss_pred CCce--eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecC------------------------
Confidence 4567 55599999999999888777777765554444444455555554444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR 156 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~ 156 (579)
+.++++++ +|.|++||+.+++....+ ..+|...|.+++|+|+++++++++.|+.|++||+.+++ ....+.
T Consensus 63 ---~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 63 ---TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp ---SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred ---CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 77788888 999999999876532221 12689999999999999999999999999999999887 566788
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
.|...|.+++|+|+++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|++||+++++.
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQ 217 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCce
Confidence 8999999999999999999987 8999999999999999999999999999999999999988 799999999998763
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
. ....+.. .+..+.|+ |++.++++++.||.|++||+.+++.... ......+.... ++++++ .+
T Consensus 218 ~-----~~~~~~~-~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~----~l 280 (337)
T 1gxr_A 218 L-----QQHDFTS-QIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLK-FAYCGK----WF 280 (337)
T ss_dssp E-----EEEECSS-CEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEE-ECTTSS----EE
T ss_pred E-----eeecCCC-ceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEEE-ECCCCC----EE
Confidence 3 3333433 45667777 9999999999999999999988765432 22221222222 566666 78
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
++++.++.++.++ ....... ....|...+.+++|+|||.++ ++++.|+.+++|++
T Consensus 281 ~~~~~dg~i~~~~--------~~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 281 VSTGKDNLLNAWR--------TPYGASI-FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSEEEEEE--------TTTCCEE-EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred EEecCCCcEEEEE--------CCCCeEE-EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence 8888776554432 1122222 234588899999999999999 99999999999987
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=288.62 Aligned_cols=294 Identities=14% Similarity=0.139 Sum_probs=232.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++|++|+.||.|+|||+.+++....+.+|...+.++.|+++
T Consensus 31 h~~~v--~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 85 (369)
T 3zwl_B 31 HERPL--TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF----------------------- 85 (369)
T ss_dssp CSSCE--EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred eeceE--EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-----------------------
Confidence 45788 55599999999999999999999999999999998877766665555544
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc------
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------ 150 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~------ 150 (579)
+.++++++.||.|++||+.+++.+..+. |..+|.+++|+|+++++++++.+ +.|++||+..+.
T Consensus 86 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 ----TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp ----SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred ----CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 7889999999999999999999887764 88899999999999999999999 999999987653
Q ss_pred -----eeeEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041 151 -----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 151 -----~~~~~~~~~~--~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
....+..|.. .+.+++|+|+++++++++ |.|++||+++ ++.+..+..|...|.+++|+|++++|++++ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 238 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-R 238 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-C
Confidence 3444555666 999999999999999987 8999999998 788899999999999999999999999987 7
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeec
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (579)
|+.|++||+.+.+.. ..+. ....+..+.++ |++.++++++.++...+|........ ...
T Consensus 239 d~~i~v~d~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~i----- 297 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVL-----KKYE-TDCPLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-----FEA----- 297 (369)
T ss_dssp TSEEEEEETTTCCEE-----EEEE-CSSCEEEEEEC-----SSSSEEEEEECCC------------------CEE-----
T ss_pred CceEEEEECCCCcee-----eeec-CCCCceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-----cee-----
Confidence 999999999987633 3343 33445667777 99999999999986555543211100 000
Q ss_pred cCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+ +..........+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus 298 ------------------------------~~-~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 298 ------------------------------RF-YHKIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFE 345 (369)
T ss_dssp ------------------------------EE-EETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEEC
T ss_pred ------------------------------EE-EecCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECc
Confidence 00 1111122233556788899999999999999 999999999999985
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.6e-34 Score=283.36 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=231.3
Q ss_pred CCCcccceEEEEccC-CCEEEEEeCCCcEEEEECCCCe-----EEEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++++| .+++|+|+ +++||||+.||+|+|||+.+++ +...+.+|...+.++.|+++
T Consensus 37 H~~~V--~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d----------------- 97 (340)
T 4aow_A 37 HNGWV--TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD----------------- 97 (340)
T ss_dssp CSSCE--EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-----------------
T ss_pred ccCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-----------------
Confidence 46789 45599998 6899999999999999987643 45666666666655555554
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eE
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GK 154 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~ 154 (579)
+.++++++.||.|++|+...+...... ..+...+....++++++++++++.|+.+++||+...... ..
T Consensus 98 ----------g~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 98 ----------GQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ----------CCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 788999999999999999998877555 457888999999999999999999999999998765443 34
Q ss_pred eecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 155 FRASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
..+|...+.+++|++++ .++++++ +.|++||+++++.+..+.+|.++|++++|+|++++|++++ .|+.|++||++
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~ 245 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLN 245 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEec
Confidence 66788899999999875 4566666 8999999999999999999999999999999999999988 79999999999
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccccc
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
+.+. +..+.++. .+..+.++ |++. +++++.||.|++||++++..+...+....
T Consensus 246 ~~~~-----~~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------- 298 (340)
T 4aow_A 246 EGKH-----LYTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI--------------- 298 (340)
T ss_dssp TTEE-----EEEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-----------------
T ss_pred cCce-----eeeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------
Confidence 8763 34444443 45667776 7765 55667799999999987765543321100
Q ss_pred chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.....+|...|.+++|+|||++| ++|+.|+++++|++.
T Consensus 299 -------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 299 -------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVT 336 (340)
T ss_dssp ------------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred -------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCC
Confidence 00223688899999999999999 999999999999985
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-36 Score=308.32 Aligned_cols=329 Identities=11% Similarity=0.114 Sum_probs=248.0
Q ss_pred cccceEEEEccCCC-EEEEE----------eCCCcEEEEECCCCeEE---EEeccCccccccccccccccccccccccce
Q 008041 5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQVQ---TEFADIASTETTSLYGNRLEREHLSVDYTC 70 (579)
Q Consensus 5 ~V~~l~~~fspdg~-~lasg----------~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (579)
+| .+++|+|+|+ +||+| +.||.|+|||+.++... ..+ .| ...+.+
T Consensus 14 ~v--~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~------------------~~~v~~ 72 (416)
T 2pm9_A 14 RT--ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QV------------------DSKFND 72 (416)
T ss_dssp ES--CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CC------------------SSCEEE
T ss_pred hc--ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ec------------------CCceEE
Confidence 45 4459999997 99999 88999999999877532 111 12 235667
Q ss_pred EEeeecccccccccCCcEEEEEECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEe
Q 008041 71 MKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEID 145 (579)
Q Consensus 71 ~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd 145 (579)
+.|.+. +.+|++|+.+|.|++||+.+ .+.+.. ..+|...|++++|+|+ ++++++++.|+.|++||
T Consensus 73 ~~~s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 73 LDWSHN---------NKIIAGALDNGSLELYSTNEANNAINSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp EEECSS---------SSCEEEEESSSCEEEECCSSTTSCCCEEEE-CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EEECCC---------CCeEEEEccCCeEEEeecccccccccchhh-ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 777553 67899999999999999988 334434 4689999999999998 88999999999999999
Q ss_pred CCCCc------eeeE---eecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------CCCEEEEEE
Q 008041 146 PLTGS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTF 207 (579)
Q Consensus 146 ~~~~~------~~~~---~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h------~~~v~~l~~ 207 (579)
+.+++ .... +..|...|.+++|+|+ +.++++++ +.|++||+++++.+..+..| ...|.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence 99876 3332 4678889999999999 78899988 89999999999999888776 789999999
Q ss_pred ecCC-CEEEEEecCCC---eEEEEEcCCCccccceeeeeee-cCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEc
Q 008041 208 SDNG-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 208 s~~~-~~l~s~~~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~ 281 (579)
+|++ .++++++ .|+ .|++||+++.... ...+. .+...+..+.|+ | ++.+|++++.||.|++||+
T Consensus 223 ~~~~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 223 HPKNSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CSSCTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECS
T ss_pred CCCCCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeC
Confidence 9997 5777776 688 9999999986422 22333 445566777787 8 8999999999999999999
Q ss_pred CCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCC-------------------------
Q 008041 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL------------------------- 336 (579)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~------------------------- 336 (579)
.+++.+.....+...+.+.. +++++.. .+++++.|+.++.++..-......
T Consensus 293 ~~~~~~~~~~~~~~~v~~~~-~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKTK-FAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp SSCCEEEEEECSSSCCCCEE-ECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred CCCccceeecCCCCceEEEE-ECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 99988766554433333322 5666631 788888887666543210000000
Q ss_pred ---CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 337 ---LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 337 ---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
....+ .....|...+..++|+|||++| ++++.|+++++|++.
T Consensus 369 ~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 369 EKPSVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCCC
T ss_pred cccccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEec
Confidence 00000 1112266678899999999999 999999999999884
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-34 Score=315.87 Aligned_cols=299 Identities=18% Similarity=0.204 Sum_probs=232.1
Q ss_pred CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
++.+| .+++|+|++ ++|++|+.||+|+|||+.+ +.....+.+|...+.++.|+++
T Consensus 381 H~~~V--~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------------- 441 (694)
T 3dm0_A 381 HTDMV--TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD----------------- 441 (694)
T ss_dssp CSSCE--EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred CCcee--EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-----------------
Confidence 56788 555999875 7999999999999999875 3455667777766666555555
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+.++++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||+.........
T Consensus 442 ----------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 442 ----------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ----------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence 788999999999999999999988666 689999999999999999999999999999998654333222
Q ss_pred ---ecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 156 ---RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 156 ---~~~~~~v~~l~~~p~g--~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
.+|...|.+++|+|++ ..+++++ +.|++||+++++...++.+|.+.|++++|+|++++|++++ .|+.|++||
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd 589 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWD 589 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEE
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Confidence 4578899999999987 5788887 8999999999999999999999999999999999999988 799999999
Q ss_pred cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccc
Q 008041 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (579)
+.+++.. ..+.++ ..+.+++|+ |++.++++++ |+.|++||+.+++.+........... .
T Consensus 590 ~~~~~~~-----~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------~ 648 (694)
T 3dm0_A 590 LAEGKKL-----YSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------E 648 (694)
T ss_dssp TTTTEEE-----ECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred CCCCceE-----EEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------c
Confidence 9987633 344343 356778887 8988877665 56799999999877654432110000 0
Q ss_pred ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.....+ ......+...+.+++|||||.+| +||+.|+++++|++.
T Consensus 649 -------~~~~~~--------------------~~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 649 -------KADNSG--------------------PAATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred -------cccccc--------------------cccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence 000000 00011233357889999999999 999999999999984
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=291.70 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=237.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.++| .+++|+|+|++||+|+.||.|+|||..+++ ....+.+|...+..+.|+++
T Consensus 7 ~~~~i--~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--------------------- 63 (372)
T 1k8k_C 7 LVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--------------------- 63 (372)
T ss_dssp CSSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---------------------
T ss_pred cCCCe--EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---------------------
Confidence 46788 555999999999999999999999999987 77777766655554444443
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeE-
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK- 154 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~- 154 (579)
+.++++++.+|.|++||+.+++..... ...|...|.+++|+|+++++++++.|+.|++||+..++. ...
T Consensus 64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 788999999999999999998754333 357999999999999999999999999999999988763 233
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC------------------CCCeeeEEeecCCCCEEEEEEecCCCEE
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~------------------~~~~~~~~~~~h~~~v~~l~~s~~~~~l 214 (579)
...|...|.+++|+|+++++++++ |.|++||+ ..++.+..+.+|...|.+++|+|++++|
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 356788999999999999999987 89999995 4678888999999999999999999999
Q ss_pred EEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC--ce--eeccc
Q 008041 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT 290 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~ 290 (579)
++++ .|+.|++||+++++. +..+..+...+..+.|+ |++.+++++ .||.|++|++.+ ++ .+...
T Consensus 218 ~~~~-~d~~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 218 AWVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEe-CCCEEEEEECCCCce-----eEEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9988 799999999988763 34555566667778887 899988877 999999999987 53 22222
Q ss_pred CCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE-ecCCCCcEEEeec-CCc---ceee
Q 008041 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI-LVNSGEDINLNCS-QDG---VLLP 365 (579)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~h~~~v~~~~~s-~dg---~~l~ 365 (579)
......... ..... .+.. ..+ ..+... +... .. ..+ .+|...|.+++|. ++| .+|
T Consensus 286 ~~~~~~~~~-------~~~~~-~~~~-~~~-----~~~~~~---~~~~-~~-~~~~~~h~~~v~~~~~~~~~g~~~~~l- 345 (372)
T 1k8k_C 286 DVPKQSSQR-------GLTAR-ERFQ-NLD-----KKASSE---GSAA-AG-AGLDSLHKNSVSQISVLSGGKAKCSQF- 345 (372)
T ss_dssp CCC---------------CHH-HHHH-HCC-----CCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEE-
T ss_pred Cccccchhh-------hcchh-hhhh-hcc-----cccccc---cCcc-cc-ccccccccCCcceeEEecCCCcceeeE-
Confidence 111110000 00000 0000 000 000000 0000 00 112 3799999999855 787 899
Q ss_pred ccccceecccceeee
Q 008041 366 MSQSLLKSKRGRYVQ 380 (579)
Q Consensus 366 ~s~s~d~~~~~w~~~ 380 (579)
+|++.|+++++|++.
T Consensus 346 ~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEETTSEEEEEEHH
T ss_pred EEecCCCceEEEEec
Confidence 999999999999984
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-34 Score=280.92 Aligned_cols=249 Identities=14% Similarity=0.077 Sum_probs=209.1
Q ss_pred EEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC
Q 008041 40 QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG 119 (579)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~ 119 (579)
..++.+|...+.++.|+++ +.++++|+.||.|++||+.++..+..+ ..|..+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~---------------------------~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~ 57 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPT---------------------------EPWVLTTLYSGRVELWNYETQVEVRSI-QVTETP 57 (304)
T ss_dssp EEEEEEECSCEEEEEECSS---------------------------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSC
T ss_pred EEeecCCCCceEEEEECCC---------------------------CCEEEEEcCCCcEEEEECCCCceeEEe-eccCCc
Confidence 4556666666666666655 788999999999999999999887666 679999
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEee
Q 008041 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFS 196 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-~~~~~~~ 196 (579)
|.+++|+|+++++++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+ ++|++||++++ .....+.
T Consensus 58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998 89999999987 5567789
Q ss_pred cCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe
Q 008041 197 GHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (579)
Q Consensus 197 ~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (579)
+|...|.+++|+| ++.+|++++ .|++|++||+...... .... .++...+..+.+.+ .+++.+|++++.||+
T Consensus 138 ~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~---~~~~~~l~s~s~D~~ 209 (304)
T 2ynn_A 138 GHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTLT-TGQERGVNYVDYYP---LPDKPYMITASDDLT 209 (304)
T ss_dssp CCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEEE-CCCTTCEEEEEECC---STTCCEEEEEETTSE
T ss_pred ccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---ceec-cCCcCcEEEEEEEE---cCCCCEEEEEcCCCe
Confidence 9999999999999 578899887 7999999999876543 1122 23333445555541 147889999999999
Q ss_pred EEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008041 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (579)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (579)
|++||+++++.+. .+.+|...|.++
T Consensus 210 i~iWd~~~~~~~~-------------------------------------------------------~~~~h~~~v~~~ 234 (304)
T 2ynn_A 210 IKIWDYQTKSCVA-------------------------------------------------------TLEGHMSNVSFA 234 (304)
T ss_dssp EEEEETTTTEEEE-------------------------------------------------------EEECCSSCEEEE
T ss_pred EEEEeCCCCccce-------------------------------------------------------eeCCCCCCEEEE
Confidence 9999987654321 344788899999
Q ss_pred eecCCcceeeccccceecccceeee
Q 008041 356 NCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+|+|++.+| +||+.|+++++|++.
T Consensus 235 ~~~p~~~~l-~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 235 VFHPTLPII-ISGSEDGTLKIWNSS 258 (304)
T ss_dssp EECSSSSEE-EEEETTSCEEEEETT
T ss_pred EECCCCCEE-EEEcCCCeEEEEECC
Confidence 999999999 999999999999985
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=286.36 Aligned_cols=239 Identities=9% Similarity=0.050 Sum_probs=193.8
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCccccccccccccccccccccccceEEeeecccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
++| .+++|+||+ .|++|+.||+|+|||+.+++....+ .+|...+.++.|+++
T Consensus 83 ~~v--~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--------------------- 138 (344)
T 4gqb_B 83 AGV--ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--------------------- 138 (344)
T ss_dssp SCE--EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---------------------
T ss_pred CCE--EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---------------------
Confidence 467 455999986 7889999999999999988754333 355555555444444
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR-- 156 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~-- 156 (579)
+.+|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++. .|++++.|++|++||+++++....+.
T Consensus 139 ------g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 211 (344)
T 4gqb_B 139 ------GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211 (344)
T ss_dssp ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence 788999999999999999999998666 68999999999999885 68999999999999999999888764
Q ss_pred cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCC
Q 008041 157 ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 157 ~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+...+.+++|+|+ ++++++|+ |.|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.++
T Consensus 212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLS 290 (344)
T ss_dssp --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCC
T ss_pred eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC
Confidence 34557999999995 56778776 8999999999999999999999999999999984 677777 7999999999887
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCce
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 285 (579)
+. .....+...+..+.|+ |++. +|++++.||+|++|++++..
T Consensus 291 ~~------~~~~~H~~~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 291 EL------FRSQAHRDFVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EE------EEECCCSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC--
T ss_pred cE------EEEcCCCCCEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCCC
Confidence 52 2344555667788887 8876 56789999999999987643
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-34 Score=334.35 Aligned_cols=324 Identities=15% Similarity=0.181 Sum_probs=262.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|||||++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 615 ~~~v--~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 668 (1249)
T 3sfz_A 615 TDAV--YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------------------------ 668 (1249)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC------------------------
Confidence 4677 56699999999999999999999999999999999888777776666665
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+.++++|+.||.|++||+.+++.+..+ .+|...|++++|+| ++..+++|+.|+.|++||+.+++++..+.+|..
T Consensus 669 ---~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 669 ---DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred ---CCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence 788999999999999999999988766 67999999999999 556799999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-------------------------------------------
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------------------------------------------- 195 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~------------------------------------------- 195 (579)
.|++++|+|+++++++++ |.|++||+.+++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 999999999999999998 89999999876544332
Q ss_pred ------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC
Q 008041 196 ------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 196 ------------~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (579)
.+|...|.+++|+|+++++++++ .|+.|++|++.++.. ...+..+...+..+.|+ |+
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----pd 893 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----PD 893 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----TT
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----CC
Confidence 16788899999999999999987 799999999988753 34555666777888888 99
Q ss_pred CcEEEEEEcCCeEEEEEcCCceeecccCCee-------------------------------------EEeeeccCCccc
Q 008041 264 GLYVLAISETGVCYIWYGQNIEELRNTKATK-------------------------------------ILSSSEDVNSKS 306 (579)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~ 306 (579)
|.+|++++.||.|++||..+........... ..+.+ ..++++
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~ 972 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPH 972 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECTT
T ss_pred CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcCC
Confidence 9999999999999999976432111000000 00011 114555
Q ss_pred ccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
++ .+++|+.++.++.++ .........+.+|...|.+++|+|||+++ ++++.|+.+++|++.+
T Consensus 973 g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 973 LE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp SS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTT
T ss_pred CC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCC
Confidence 55 677777665444322 23345566777899999999999999999 9999999999999853
No 32
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-33 Score=281.02 Aligned_cols=236 Identities=19% Similarity=0.296 Sum_probs=202.5
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.++| .+++|+|+|++|++|+.|+.|++||+.++ .....+.+|.. .+.++.|.+
T Consensus 97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~--- 153 (340)
T 1got_B 97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG------------------YLSCCRFLD--- 153 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS------------------CEEEEEEEE---
T ss_pred CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc------------------cEEEEEECC---
Confidence 4567 66699999999999999999999999875 34445554443 344555544
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
...+++++.||.|++||+.+++.+..+ .+|.+.|.+++|+|+++++++|+.|+.|++||+++++++..+.+|
T Consensus 154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 345899999999999999999988666 689999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
...|++++|+|++++|++|+ |.|++||+++++.+..+.. +...|.+++|+|+|+++++++ .|+.|++||+.+.+.
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR 304 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence 99999999999999999998 8999999999988877753 335799999999999999988 799999999988753
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
...+..+...+.++.|+ |+|.+|++|+.||+|++||
T Consensus 305 -----~~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 -----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----EEEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred -----eeEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence 34555666778888888 9999999999999999996
No 33
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.7e-34 Score=318.49 Aligned_cols=250 Identities=13% Similarity=0.218 Sum_probs=216.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+++| .+++|||+|++||+|+.||.|+|||+.+++....+.+|...+.++.|+++
T Consensus 13 ~~~v--~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------------------------ 66 (814)
T 3mkq_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIAR------------------------ 66 (814)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred CCce--EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCC------------------------
Confidence 5678 55599999999999999999999999999999988877665555544444
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~ 161 (579)
+.+|++|+.+|.|++||+.+++.+..+ .+|.+.|++++|+|+++++++++.||.|++||+.++ .....+.+|...
T Consensus 67 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 778999999999999999999988666 679999999999999999999999999999999887 677788899999
Q ss_pred eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 162 v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~s~--~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|.+++|+| +++.+++++ |.|++||+.+++....+..+. ..+.+++|+| +++++++++ .|+.|++||+.+++.
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~- 220 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC- 220 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE-
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE-
Confidence 99999999 888999887 899999999988877776655 8999999999 999999987 799999999988753
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 293 (579)
+..+..+...+.++.|+ |++.+|++++.||.|++||..+++.+......
T Consensus 221 ----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 221 ----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp ----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred ----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 34555566667788887 99999999999999999999998776655433
No 34
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-34 Score=288.72 Aligned_cols=283 Identities=10% Similarity=0.041 Sum_probs=214.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCC-------cEEEEECCCCeE--------E--EEeccCcccccccccccccccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQV--------Q--TEFADIASTETTSLYGNRLEREHLSV 66 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg-------~i~vwd~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (579)
-|| .+++|+|||++|++|+.|. .|++|++..+.. . ..+.++...
T Consensus 15 ~PV--~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------- 75 (365)
T 4h5i_A 15 YPA--YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDS----------------- 75 (365)
T ss_dssp SCE--EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCC-----------------
T ss_pred CCE--EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCc-----------------
Confidence 488 6669999999999998543 599999875531 1 112222222
Q ss_pred ccceEEeeecccccccccCCcEEEE-----------EECCCeEEEEEccCCeEEEEe--------cCCCCCCEEEEEEcc
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVL-----------GTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFAT 127 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~-----------~~~~g~i~iwd~~~~~~~~~~--------~~~h~~~V~~l~~~~ 127 (579)
+.++.+. +..+++ ++.++.+++|++.+....... ...+...+.+++|+|
T Consensus 76 -v~s~~~~-----------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 76 -PTAIDAS-----------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp -CCEEEEE-----------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred -eEEEEeC-----------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 2333332 233443 445677999998765321111 123445689999999
Q ss_pred CCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEE--eecCCCCE
Q 008041 128 HGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAV 202 (579)
Q Consensus 128 ~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~--~~~h~~~v 202 (579)
||+++++++ .|++|++||+.+++++..+. |.+.|.+++|+|||+++++++ +.+.+|+..+++.+.. ..+|...|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence 999976554 78999999999999998886 677899999999999999998 8888998888876543 35788899
Q ss_pred EEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041 203 RFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 203 ~~l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (579)
.+++|+|+++++++++ .|+ .++.|++...... ......+..+...+.++.|+ |+|++||+|+.||+|+|
T Consensus 223 ~~v~fspdg~~l~~~s-~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 223 SKINFIADDTVLIAAS-LKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIAL 295 (365)
T ss_dssp EEEEEEETTEEEEEEE-ESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEE
T ss_pred EEEEEcCCCCEEEEEe-cCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEE
Confidence 9999999999999987 465 6888998776532 11233445566667888888 99999999999999999
Q ss_pred EEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
||+++++.+... +.+|...|.+++||
T Consensus 296 wd~~~~~~~~~~------------------------------------------------------~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 296 VKLKDLSMSKIF------------------------------------------------------KQAHSFAITEVTIS 321 (365)
T ss_dssp EETTTTEEEEEE------------------------------------------------------TTSSSSCEEEEEEC
T ss_pred EECCCCcEEEEe------------------------------------------------------cCcccCCEEEEEEC
Confidence 999877654211 12688899999999
Q ss_pred CCcceeeccccceecccceeee
Q 008041 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
|||++| +|||.|+++|+|++.
T Consensus 322 pdg~~l-aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 322 PDSTYV-ASVSAANTIHIIKLP 342 (365)
T ss_dssp TTSCEE-EEEETTSEEEEEECC
T ss_pred CCCCEE-EEEeCCCeEEEEEcC
Confidence 999999 999999999999983
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.2e-34 Score=288.31 Aligned_cols=282 Identities=12% Similarity=0.105 Sum_probs=219.6
Q ss_pred CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEec--cCccccccccccccccccccccccceEEeeecccc
Q 008041 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~l~~~fspdg-~~lasg~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .+++|+|+| ++||+|+.||.|+|||+.+++....+. +|.. .+.++.|.+.+
T Consensus 73 ~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~-- 130 (383)
T 3ei3_B 73 DRRV--TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD------------------AITGMKFNQFN-- 130 (383)
T ss_dssp SSCE--EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC------------------BEEEEEEETTE--
T ss_pred CCCE--EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC------------------ceeEEEeCCCC--
Confidence 4678 556999999 999999999999999999888776654 2433 44566665532
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
+.++++++.||.|++||+.+.... .+. .+|...|.+++|+|+++++++++.|+.|++||+ +++.+..+.+
T Consensus 131 ------~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~ 202 (383)
T 3ei3_B 131 ------TNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL 202 (383)
T ss_dssp ------EEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred ------CCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence 678999999999999999975432 332 345588999999999999999999999999998 6888899999
Q ss_pred CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC----CeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEc
Q 008041 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~----~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~ 229 (579)
|...|.+++|+|+++ ++++++ +.|++||+++ +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||+
T Consensus 203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~ 280 (383)
T 3ei3_B 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSS 280 (383)
T ss_dssp SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEET
T ss_pred CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEEC
Confidence 999999999999999 888887 8999999998 5666666 6999999999999 999999988 7999999999
Q ss_pred CCCccccceeeeee-----e---------cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041 230 DGVKKQSASCVLAM-----E---------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 230 ~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
++.+... ..... . ++......+.++ |++++ +++.||.|++||+.+++.+..+..
T Consensus 281 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~--- 348 (383)
T 3ei3_B 281 YDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQLRD--- 348 (383)
T ss_dssp TBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEEECB---
T ss_pred CCCcccc--ccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeeeecC---
Confidence 8876431 11000 0 111122224444 66666 677899999999887765332210
Q ss_pred EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (579)
..|...+..++|+|||.+| ++++ |+.++
T Consensus 349 --------------------------------------------------~~~~~~~~~~~~s~~g~~l-~s~s-d~~i~ 376 (383)
T 3ei3_B 349 --------------------------------------------------PNAAGIISLNKFSPTGDVL-ASGM-GFNIL 376 (383)
T ss_dssp --------------------------------------------------TTBCSCCCEEEECTTSSEE-EEEE-TTEEE
T ss_pred --------------------------------------------------CCCCceEEEEEEecCccEE-EEec-CCcEE
Confidence 0134456677999999999 8887 99999
Q ss_pred ceeee
Q 008041 376 GRYVQ 380 (579)
Q Consensus 376 ~w~~~ 380 (579)
+|++.
T Consensus 377 iw~~~ 381 (383)
T 3ei3_B 377 IWNRE 381 (383)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-35 Score=296.99 Aligned_cols=241 Identities=8% Similarity=0.078 Sum_probs=190.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++|+++ +|+|+|++||+|+.||.|+|||+.++ +....+.+|...+.++.|+++
T Consensus 11 ~~~v~~~--~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------------------- 66 (377)
T 3dwl_C 11 PKPSYEH--AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---------------------- 66 (377)
T ss_dssp SSCCSCC--EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----------------------
T ss_pred CCcEEEE--EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----------------------
Confidence 4688555 99999999999999999999999988 666677666655555555444
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeE
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~ 154 (579)
+.+|++++.||.|++||+.+++ ....+ .+|...|++++|+|++++|++++.|+.|++||+.+++ ....
T Consensus 67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 6789999999999999999887 33333 6799999999999999999999999999999999887 4677
Q ss_pred eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECC------------------CCeeeEEeecCCCCEEEEEEecCCCE
Q 008041 155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 155 ~~~-~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~------------------~~~~~~~~~~h~~~v~~l~~s~~~~~ 213 (579)
+.. |...|.+++|+|+++++++++ +.|++||++ .++++..+ +|...|.+++|+|++++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 777 899999999999999999988 899999985 35566677 89999999999999999
Q ss_pred EEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 214 l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
|++++ .|+.|++||+.+++.. ...+..+..+...+..+.|+ |++++|++++.++.+ +|+..
T Consensus 220 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 220 LAYAG-HDSSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEE-TTTEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred EEEEe-CCCcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence 99988 7999999999988752 11234555666667788887 999999988776666 66554
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-33 Score=289.15 Aligned_cols=304 Identities=13% Similarity=0.158 Sum_probs=245.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+++++|++|++|+.||+|++||+.+++....+.+|...+.+ +.|. +.++++
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~------------------~~~~-----------~~~l~s 174 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS------------------SQMR-----------DNIIIS 174 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEE------------------EEEE-----------TTEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEE------------------EEec-----------CCEEEE
Confidence 57778999999999999999999999999988877655543 3332 457999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g 171 (579)
|+.||.|++||+.+++.+..+ .+|...|.++.|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.++++ ++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 999999999999999988666 6899999999995 568999999999999999999999999999999999999 67
Q ss_pred CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCcee
Q 008041 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 172 ~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
+++++++ |.|++||+++++.+.++.+|...|.++.| ++.++++++ .|+.|++||+++++. +..+..+...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~-----~~~~~~~~~~ 321 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNC-----IHTLTGHQSL 321 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCE-----EEEECCCCSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCE-----EEEEcCCccc
Confidence 8888887 89999999999999999999999999999 788999987 799999999998763 3444444444
Q ss_pred EEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC---eeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
+..+.+ ++.++++++.||.|++||+.+++.+..... ....+.+.. + +++ .+++++.|+.++.+
T Consensus 322 v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 322 TSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred EEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence 444443 567999999999999999999887765543 222222222 1 223 78888887765553
Q ss_pred ceEEEEEeCCCCCceeEEE-----ecCCCCcEEEeecCCcceeeccccceec----ccceeee
Q 008041 327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ 380 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~ 380 (579)
+ .........+ ..|...|.+++|+|+|.++ ++|+.|++ +.+|++.
T Consensus 388 d--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 388 D--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp E--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred E--------CCCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence 3 2233344444 3678889999999999999 99999998 8899874
No 38
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.3e-34 Score=331.60 Aligned_cols=338 Identities=18% Similarity=0.222 Sum_probs=265.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+++ .
T Consensus 656 h~~~v--~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------~---- 711 (1249)
T 3sfz_A 656 HEDEV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK------------------S---- 711 (1249)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------S----
T ss_pred CCCCE--EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC------------------C----
Confidence 35678 56699999999999999999999999999999999877766655555442 1
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----- 156 (579)
+..++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+++++++++.||.|++||+.+++....+.
T Consensus 712 ---~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 787 (1249)
T 3sfz_A 712 ---NHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787 (1249)
T ss_dssp ---SCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred ---CceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence 1568999999999999999999988666 6899999999999999999999999999999987765443321
Q ss_pred --------------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008041 157 --------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTF 184 (579)
Q Consensus 157 --------------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--~~i~vw 184 (579)
+|...|.+++|+|+++++++++ |.|++|
T Consensus 788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 867 (1249)
T 3sfz_A 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867 (1249)
T ss_dssp --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5677899999999999999998 899999
Q ss_pred ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---------------ee---------
Q 008041 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---------------CV--------- 240 (579)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~---------------~~--------- 240 (579)
|+.+++.+..+.+|...|.+++|+|+++++++++ .|+.|++|++......... ..
T Consensus 868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 9999999999999999999999999999999988 7999999997642110000 00
Q ss_pred --e------eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041 241 --L------AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 241 --~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
. ........+.+++++ |++.++++|+.||.|++||+.+++.+.....+...+.+.. ++++++
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~---- 1016 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGK---- 1016 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSS----
T ss_pred EEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCC----
Confidence 0 000122345667777 9999999999999999999999887766554443333333 566666
Q ss_pred hhhhccccceecCCc---------------------------------eEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008041 313 AIFAAKLQDIVKPAS---------------------------------VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (579)
Q Consensus 313 ~i~~~~~~~~~~~~~---------------------------------~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (579)
.+++++.|+.++.++ +.+.+. ..........+.+|...+.+++|+|
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vw-d~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW-NVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEE-ETTTTCCCEEEECCSSCCCCEEECS
T ss_pred EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEE-ECCCCceeEEEcccCCcEEEEEECC
Confidence 777777776554432 111111 1223345567788999999999999
Q ss_pred Ccceeeccccceecccceeee
Q 008041 360 DGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~~~ 380 (579)
||.++ ++++.|+++++|++.
T Consensus 1096 d~~~l-~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1096 DATKF-SSTSADKTAKIWSFD 1115 (1249)
T ss_dssp SSSSC-EEECCSSCCCEECSS
T ss_pred CCCEE-EEEcCCCcEEEEECC
Confidence 99999 999999999999985
No 39
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-34 Score=287.16 Aligned_cols=298 Identities=11% Similarity=0.124 Sum_probs=234.7
Q ss_pred CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041 2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 2 ~~~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
+.++| .+++|+|+ ...+++++.++.|+|||+.+++.+..+..+.. ......+.++.|.+..
T Consensus 17 h~~~v--~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 17 HNQPL--FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------------ADADENFYTCAWTYDS 81 (366)
T ss_dssp TCSCE--EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------------SCTTCCEEEEEEEECT
T ss_pred CCCce--EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------------cCCCCcEEEEEeccCC
Confidence 45788 56699984 44566666677999999998887766653321 1123457788888764
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-
Q 008041 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF- 155 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~- 155 (579)
.. ++.++++|+.+|.|++||+.+++.+..+ .+|..+|++++|+| ++++|++++.||.|++||+.+++.+..+
T Consensus 82 ~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 82 NT-----SHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp TT-----CCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CC-----CCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence 21 1568999999999999999999988666 57999999999999 9999999999999999999999998888
Q ss_pred --ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee----------------------------cCCCCEE
Q 008041 156 --RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVR 203 (579)
Q Consensus 156 --~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~----------------------------~h~~~v~ 203 (579)
..|...|.+++|+|+++++++++ |.|++||+++++.+..+. +|...|.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 67999999999999999999998 899999999876554333 3999999
Q ss_pred EEEEecCCCEEEEEecCCCeEEEEEcCCCccc---------cceeeeeeecCceeEEeEEecCCcccCC--CcEEEEEEc
Q 008041 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISE 272 (579)
Q Consensus 204 ~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 272 (579)
+++|+ ++++++++ .|+.|++||+.+.... ....+..+..+...+..+.|+ |+ +++|++++.
T Consensus 236 ~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~ 307 (366)
T 3k26_A 236 CVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQ 307 (366)
T ss_dssp EEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECT
T ss_pred EEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEec
Confidence 99999 67888887 7999999999876531 011234444455556666666 78 999999999
Q ss_pred CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC--CC
Q 008041 273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SG 350 (579)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~ 350 (579)
||.|++||+.+++..... ...+.+| ..
T Consensus 308 dg~i~vwd~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~ 336 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAK---------------------------------------------------CTTLTHHKCGA 336 (366)
T ss_dssp TSCEEEEECCSSSGGGCE---------------------------------------------------EEEECCTTCCS
T ss_pred CCcEEEEECCCCCCcccc---------------------------------------------------ceEEcccccCC
Confidence 999999998776432100 0122344 67
Q ss_pred CcEEEeecCCcceeeccccceecccceeee
Q 008041 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.|.+++|+|||++| ++++.|+.+++|++.
T Consensus 337 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 337 AIRQTSFSRDSSIL-IAVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred ceEEEEeCCCCCeE-EEEeCCCEEEEEEec
Confidence 89999999999999 999999999999873
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=285.32 Aligned_cols=309 Identities=12% Similarity=0.110 Sum_probs=232.6
Q ss_pred CCCcccceEEEEccCCCEE-EEEeC---CCcEEEEECCCCeEEEEec-cCccccccccccccccccccccccceEEeeec
Q 008041 2 GSSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~l-asg~~---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+..+| .+++|+|++..+ ++|+. ||.|+|||+.+++...... +|.. .+.++.|.+.
T Consensus 17 h~~~v--~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~ 76 (357)
T 3i2n_A 17 FNYTV--FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK------------------PIKCGTFGAT 76 (357)
T ss_dssp CSSCE--EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS------------------CEEEEECTTC
T ss_pred CCCce--EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC------------------cEEEEEEcCC
Confidence 34678 566999999655 56665 9999999999988754432 3333 4455666554
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCCCCEEEEEE------ccCCCEEEEEeCCCcEEEEeCCCC
Q 008041 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~------~~~~~~l~s~~~d~~v~iwd~~~~ 149 (579)
.++ +.++++|+.+|.|++||+.+++ .+..+ .+|...|.++.| +|++++|++++.|+.|++||+.++
T Consensus 77 ~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 77 SLQ------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp CTT------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred CCC------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence 322 5789999999999999999987 55444 689999999954 689999999999999999999988
Q ss_pred c-eeeEeecCCC----CeeEEE----EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec---CCCEEE
Q 008041 150 S-LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVL 215 (579)
Q Consensus 150 ~-~~~~~~~~~~----~v~~l~----~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~ 215 (579)
+ .+..+..+.+ .+.+++ |+|+++++++++ |.|++||+++++.... ..|...|.+++|+| ++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEE
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEE
Confidence 7 6777766554 889998 788999999998 8999999999987544 66899999999999 899999
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCceeecccCCee
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATK 294 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (579)
+++ .|+.|++||+++.+............+...+..+.|+ |++. +|++++.||.|++||+.++.......
T Consensus 229 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 299 (357)
T 3i2n_A 229 ATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD--- 299 (357)
T ss_dssp EEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC---
T ss_pred EEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc---
Confidence 987 7999999999887644211112233556667778887 8888 89999999999999987665432111
Q ss_pred EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008041 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (579)
..+.. . ...+ .......+.+|...|.+++|+|+|.+++++++.|+.+
T Consensus 300 ----------~~g~~----~----------~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 300 ----------SEGIE----M----------GVAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp ----------TTSCC----C----------CCCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ----------CCCCc----c----------cccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 11110 0 0000 1123446778999999999999999993389999999
Q ss_pred cceeee
Q 008041 375 RGRYVQ 380 (579)
Q Consensus 375 ~~w~~~ 380 (579)
++|++.
T Consensus 347 ~iw~~~ 352 (357)
T 3i2n_A 347 RVLIVT 352 (357)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 999985
No 41
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=304.33 Aligned_cols=310 Identities=12% Similarity=-0.001 Sum_probs=213.1
Q ss_pred EEEeCCCcEEEEECCCCeEE----EEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 21 AICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 21 asg~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
|+++.|++|+|||+.++++. ..+.++.. .+..+.|.|.... ..++.+|++++.||
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~------------------~V~~v~wsp~~~~---~~~~~~LAs~s~Dg 235 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG------------------EVWDLKWHEGCHA---PHLVGCLSFVSQEG 235 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCC------------------SEEEEEECSSCCC---SSSSCEEEEEETTS
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCC------------------cEEEEEECCCCCC---CCCCceEEEEecCC
Confidence 33557889999999877642 22322222 3456666664100 00157899999999
Q ss_pred eEEEEEccCCeEE----------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEE
Q 008041 97 DVLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCM 165 (579)
Q Consensus 97 ~i~iwd~~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~l 165 (579)
.|++||+.++... ...+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|+++
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999999876421 11336799999999999864 89999999999999998774 455688999999999
Q ss_pred --EEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 166 --AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 166 --~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
+|+|+| .+|++++ ++|++||+++++++.++.+|.. .|.+++|+|+++.+++++ .|++|++||++.+...
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~--- 390 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV--- 390 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC---
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc---
Confidence 578888 8899988 9999999999888878877764 588999999999988887 7999999999987643
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCee-----EEeeeccCCcccccccchh
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSATAA 313 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 313 (579)
..+..+...+..+.|+ |+|.+|++|+.||+|++||.... .+..++... ..+.... ++++++ .
T Consensus 391 --~~l~gH~~~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~-~sp~g~----~ 457 (524)
T 2j04_B 391 --HPLVSRETTITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWD-YSIKDD----K 457 (524)
T ss_dssp --EEEEECSSCEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECB-CCSSSC----E
T ss_pred --eeeecCCCceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEec-cCCCCC----e
Confidence 3344455567778887 99999999999999999997653 333222111 0111111 455544 1
Q ss_pred hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc---eeeccccceecccceeee
Q 008041 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~~~~w~~~ 380 (579)
+. . .+..+... . .........+.+|...|.+++|+|++. ++ ++|+.|+++|+|++.
T Consensus 458 ~~-~--~~~~~~~~-----~--~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l~ 516 (524)
T 2j04_B 458 YR-I--DSSYEVYP-----L--TVNDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYLS 516 (524)
T ss_dssp EE-E--CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEECS
T ss_pred EE-c--cCCceecc-----c--ccCCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEcc
Confidence 11 1 11001100 0 001234456778999999999999964 88 999999999999984
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-33 Score=286.56 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=234.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCccccccccccccccccccccccceEEeee
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
+.++| .+++|+| ++|++|+.||.|+|||+.+++ ....+.+|.. .+.++.|.+
T Consensus 15 h~~~i--~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~ 72 (397)
T 1sq9_A 15 HDADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------------------GLHHVDVLQ 72 (397)
T ss_dssp SSSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT------------------CEEEEEEEE
T ss_pred hhcCe--EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC------------------cEEEEEEec
Confidence 45788 5559999 799999999999999999887 5555554443 455666766
Q ss_pred cccccccccCC---cEEEEEECCCeEEEEEccCCeE-----EEEecCCC-----CCCEEEEEEc----cCCCE-EEEEeC
Q 008041 76 VDRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGA 137 (579)
Q Consensus 76 ~~~~~~~~~~~---~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~~~ 137 (579)
.... ++ .++++++.+|.|++||+.+++. ...+ ..| ...|.+++|+ |++++ |++++.
T Consensus 73 ~~~~-----~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 73 AIER-----DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp EEET-----TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred cccc-----CCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 4100 14 6899999999999999998875 5444 567 5899999999 99999 999999
Q ss_pred CCcEEEEeCCC------Cceee-----Eee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041 138 DGMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 138 d~~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~ 197 (579)
||.|++||+.+ ++.+. .+. .|...|.+++|+|++ ++++++ +.|++||+++++.+..+..
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 99999999988 66666 774 478899999999999 999988 8999999999999999998
Q ss_pred ---C---CCCEEEEEEecCCCEEEEEecCC---CeEEEEEcCCCccccceeeeeeec-------------CceeEEeEEe
Q 008041 198 ---H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCI 255 (579)
Q Consensus 198 ---h---~~~v~~l~~s~~~~~l~s~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 255 (579)
| ...|.+++|+|++++|++++ .| +.|++||+.+++.. ..+.. +...+..+.|
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEE
T ss_pred cccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEE
Confidence 9 99999999999999999987 68 99999999987633 34443 5566777888
Q ss_pred cCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeC
Q 008041 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG 335 (579)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g 335 (579)
+ |++.+|++++.||.|++||+.+++.+....... ...+.. .. .. .|
T Consensus 300 ~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~----~~--------------~g 345 (397)
T 1sq9_A 300 N-----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHC---------DDIEIE--ED----IL--------------AV 345 (397)
T ss_dssp C-----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCG---------GGCSSG--GG----CC--------------CB
T ss_pred C-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc---------Ccccch--hh----hh--------------cc
Confidence 7 999999999999999999999887654432100 000000 00 00 00
Q ss_pred CCCCceeEEEecCCCCcEEEeecCCc----------ceeeccccceecccceeee
Q 008041 336 LLLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 336 ~~~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~~s~s~d~~~~~w~~~ 380 (579)
.. ....+|...|.+++|+||| .+| ++++.|+.+++|++.
T Consensus 346 ~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 346 DE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREA 394 (397)
T ss_dssp CT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEE
T ss_pred cc-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcC
Confidence 00 0123578899999999999 688 999999999999985
No 43
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-33 Score=273.27 Aligned_cols=247 Identities=16% Similarity=0.190 Sum_probs=196.5
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC--CeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
++++| .+++|+|+|++||+|+.|++|+|||+.+ +++...+.+|...+.++.|+++ .
T Consensus 8 h~~~V--~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~------------------~-- 65 (297)
T 2pm7_B 8 HNEMI--HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHP------------------K-- 65 (297)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCG------------------G--
T ss_pred CcCce--EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCC------------------C--
Confidence 45778 4559999999999999999999999974 3566777777665555444432 1
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce--ee
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL--LG 153 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~~--~~ 153 (579)
.+.+|++|+.||.|++||+.+++ .+.. ..+|...|.+++|+|+ |.+|++++.|+.|++||++++.. ..
T Consensus 66 -----~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 66 -----FGTILASCSYDGKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp -----GCSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred -----cCCEEEEEcCCCEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 16789999999999999999875 2323 3679999999999997 88999999999999999987632 45
Q ss_pred EeecCCCCeeEEEEccC-------------CCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCC---
Q 008041 154 KFRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG--- 211 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~-------------g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~--- 211 (579)
.+.+|...|.+++|+|+ +++|++|+ +.|++||+++++ ...++.+|...|.+++|+|++
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 67889999999999997 56899887 899999998765 567889999999999999985
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
++|++++ .|++|++||++...............+...+..+.|+ |+|++|++++.||.|++|+..
T Consensus 220 ~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred eEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence 7888887 7999999999875321100111112234456677787 999999999999999999865
No 44
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=291.59 Aligned_cols=257 Identities=12% Similarity=0.170 Sum_probs=196.6
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccCccccccccccccccccccccccceE
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++| .+++|+|+|++||+|+.||.|+|||+.++. ....+.+|....... ..-.....+.++
T Consensus 28 ~~~V--~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~V~~l 99 (447)
T 3dw8_B 28 ADII--STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYL------KSLEIEEKINKI 99 (447)
T ss_dssp GGSE--EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGG------GTEEECCCCCEE
T ss_pred cCcE--EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccc------ccccccCceEEE
Confidence 3678 566999999999999999999999999877 466666654211000 000012356677
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE---------------------------------------EEe
Q 008041 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL 112 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~---------------------------------------~~~ 112 (579)
.|.+... ...+++++.||.|++||+.++... ..+
T Consensus 100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 7776521 268999999999999999875542 133
Q ss_pred cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cceee-------EeecCCCCeeEEEEccCC-CEEEEEC--CeE
Q 008041 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLG-------KFRASTKGISCMAVSSDG-KMLATAA--GQL 181 (579)
Q Consensus 113 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~p~g-~~l~~~~--~~i 181 (579)
..+|...|++++|+|++++|++| .|+.|++||+.+ ++.+. .+.+|...|++++|+|++ +++++++ |.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 46899999999999999999998 899999999984 44444 356788999999999998 8999988 899
Q ss_pred EEEECCCCee----eEEeecCCC------------CEEEEEEecCCCEEEEEecCCCeEEEEEcCC-Cccccceeeeeee
Q 008041 182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME 244 (579)
Q Consensus 182 ~vwd~~~~~~----~~~~~~h~~------------~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~-~~~~~~~~~~~~~ 244 (579)
++||+++++. +..+.+|.. .|.+++|+|++++|++++ . +.|++||++. ++.. ..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence 9999999887 788888876 899999999999999887 5 9999999987 4432 2222
Q ss_pred cCceeE---------------EeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.+.... ..+.|+ |++.+|++++.||.|++||+.+++.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence 222211 126676 99999999999999999999988765
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-32 Score=279.27 Aligned_cols=240 Identities=19% Similarity=0.272 Sum_probs=203.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|+|||++||+|+.||.|+|||+.+++....+.+|...+.++.|+++ +..
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~---------------------------~~~ 179 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---------------------------GDK 179 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC---------------------------CCE
Confidence 45699999999999999999999999999999998887776666656554 778
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-------ecCCC
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTK 160 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~ 160 (579)
+++|+.||.|++||+.+++....+ .+...+.+++|+| +++++++|+.|+.|++||+.+++.+..+ .+|..
T Consensus 180 l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 180 LVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257 (393)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred EEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence 999999999999999999887655 3667899999999 8999999999999999999999887776 57888
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCC------------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
.|.+++|+|+|+++++++ +.|++||+++. .+...+.+|...|.+++|+|++++|++++ .|+.|++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~i 336 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLF 336 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEE
Confidence 999999999999999998 89999999763 34567889999999999999999999988 7999999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEEecC-CcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDN-GGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
||+.+++. +..+..+...+..+.+++ ..+.|++.+|++|+.||+|++|++..
T Consensus 337 wd~~~~~~-----~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 337 WDKKSGNP-----LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EETTTCCE-----EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCeE-----EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99998763 344554555555566552 34557899999999999999999754
No 46
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=311.71 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=166.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++||+|+.||+|+||+..+++....+. | ...+.++.|.+
T Consensus 17 ~~~V--~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~------------------~~~V~~l~fsp------- 68 (902)
T 2oaj_A 17 SSKP--IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-D------------------RSAIKEMRFVK------- 68 (902)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-S------------------CCCEEEEEEET-------
T ss_pred CCCc--EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-C------------------CCCEEEEEEcC-------
Confidence 4678 566999999999999999999999998877665432 2 22456666765
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----------
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------- 152 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---------- 152 (579)
+.+|++++.|+.|++||+.+++.+..+. |...|++++|+|+++++++|+.||.|++||+.+++..
T Consensus 69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 3479999999999999999998887663 7789999999999999999999999999999988753
Q ss_pred -eEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------------------CCCEEEEEEecC
Q 008041 153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN 210 (579)
Q Consensus 153 -~~~~~~~~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h------------------~~~v~~l~~s~~ 210 (579)
..+.+|.++|.+++|+|+ +..+++|+ |.| +||+++++.+..+..| ...|.+++|+|+
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 234668889999999996 46788877 899 9999999998888766 577999999999
Q ss_pred CCEEEEEecCCCeEEEEEcCCCc
Q 008041 211 GKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 211 ~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
|++|++++ .|+.|++||+++++
T Consensus 223 g~~lasgs-~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 223 SLHIITIH-EDNSLVFWDANSGH 244 (902)
T ss_dssp SSEEEEEE-TTCCEEEEETTTCC
T ss_pred CCEEEEEE-CCCeEEEEECCCCc
Confidence 99999998 79999999998765
No 47
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.9e-32 Score=269.44 Aligned_cols=244 Identities=18% Similarity=0.210 Sum_probs=202.7
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.+| .+++|+|+|++|++|+.|++|+|||+.+++....+.+|...+.++.|+++
T Consensus 64 h~~~v--~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~----------------------- 118 (319)
T 3frx_A 64 HSHIV--QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK----------------------- 118 (319)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred CcccE--EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC-----------------------
Confidence 34677 55599999999999999999999999999999999888777766666655
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC------CCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+.++++|+.||.|++||+... .+..+ .+|...|.++.|+|. +..+++++.|+.|++||+.+++....+
T Consensus 119 ----~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 192 (319)
T 3frx_A 119 ----ASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192 (319)
T ss_dssp ----SCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee
Confidence 788999999999999999754 44344 679999999999985 448999999999999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.+|...|.+++|+|+|++|++++ |.|++||+.+++.+.++.. ...|.+++|+|++.++++++ ++.+++|++....
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~ 269 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQY 269 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCe
Confidence 99999999999999999999998 8999999999999988875 46899999999999988875 5669999998754
Q ss_pred ccccee-ee--eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 234 KQSASC-VL--AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 234 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
...... .+ ....+...+..++|+ |+|++|++|+.||.|++||+.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence 220000 00 001123345567787 99999999999999999998764
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-32 Score=279.00 Aligned_cols=275 Identities=15% Similarity=0.187 Sum_probs=226.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecc-CccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+++|++ ..+++++.||.|++||+.+++....+.. |. ..++++.|.+. +.
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~------------------~~v~~v~~s~~---------~~ 147 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES------------------TYVASVKWSHD---------GS 147 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT------------------CCEEEEEECTT---------SS
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC------------------CCEEEEEECCC---------CC
Confidence 4345654 5688888999999999999998776653 22 34556666653 78
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeecCCCCeeEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~l~ 166 (579)
++++|+.+|.|++||+.+++.+..+ .+|...|.+++| +++++++++.||.|++||++ .+..+..+.+|...|.+++
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence 8999999999999999999988666 589999999999 56799999999999999998 5677888999999999999
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeeee
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
|+|+++++++++ +.|++||+++++.+..+.+|...|.+++|+|++..++++++ .|+.|++||+.+++.. ..
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~ 299 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NT 299 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EE
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EE
Confidence 999999999998 89999999999999999999999999999998765555542 5999999999987633 34
Q ss_pred eecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
+.+. ..+..+.|+ |++.++++++ .||.|++||+.+++....
T Consensus 300 ~~~~-~~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~------------------------------- 342 (401)
T 4aez_A 300 VDAG-SQVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ------------------------------- 342 (401)
T ss_dssp EECS-SCEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEEE-------------------------------
T ss_pred EeCC-CcEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCccceeE-------------------------------
Confidence 4444 346677787 9999999954 799999999765432110
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
..+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus 343 ----------------------~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 343 ----------------------VDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVY 379 (401)
T ss_dssp ----------------------EEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECC
T ss_pred ----------------------EEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECC
Confidence 0234688899999999999999 999999999999985
No 49
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-32 Score=296.41 Aligned_cols=330 Identities=11% Similarity=0.037 Sum_probs=251.7
Q ss_pred CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.++| .+++|+|+++ ++++++.||.|++||..+++....+.+|.. ....+.++.|.+.+
T Consensus 160 ~~~v--~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~---- 218 (615)
T 1pgu_A 160 SQRI--NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK---------------QGSFVRDVEFSPDS---- 218 (615)
T ss_dssp SSCE--EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC---------------TTCCEEEEEECSTT----
T ss_pred CccE--EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC---------------CCceEEEEEECCCC----
Confidence 4567 5569999998 899999999999999999999988876554 00134556665532
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
+.++++++.+|.|++||+.+++.+..+.. +|..+|.+++|+ +++++++++.|+.|++||+.+++.+..+..+
T Consensus 219 ----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 219 ----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 56799999999999999999998877745 899999999999 9999999999999999999999999988876
Q ss_pred ----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC----------------------
Q 008041 159 ----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------------- 210 (579)
Q Consensus 159 ----~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~---------------------- 210 (579)
...+.++.|+ +++++++++ |.|++||+.+++.+..+.+|...|.+++| |+
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence 3578888886 788888887 89999999998888888777777666666 44
Q ss_pred -----------CCEEEEEecCCCeEEEEEcCCCcc---------------------------------------------
Q 008041 211 -----------GKYVLSSAVGERYIALWRTDGVKK--------------------------------------------- 234 (579)
Q Consensus 211 -----------~~~l~s~~~~d~~i~vwd~~~~~~--------------------------------------------- 234 (579)
+..+++++ .|+.|++|++...+.
T Consensus 372 ~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450 (615)
T ss_dssp CSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred cCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence 45555555 466666665542110
Q ss_pred ---------------ccce---------ee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 235 ---------------QSAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 235 ---------------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
.... .. ..+..+...+.++.|+ |++++|++++.||.|++||+.+++.+..
T Consensus 451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 525 (615)
T 1pgu_A 451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSREVKTS 525 (615)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence 0000 00 2223344556677777 9999999999999999999999998877
Q ss_pred cCC-eeEEeeeccCCcc----------cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041 290 TKA-TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 290 ~~~-~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
... +...+.+.. +++ +++ .+++++.|+.++.++ -.........+.+|...|.+++|+
T Consensus 526 ~~~~h~~~v~~~~-~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~-------~~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 526 RWAFRTSKINAIS-WKPAEKGANEEEIEED----LVATGSLDTNIFIYS-------VKRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp CSCCCSSCEEEEE-ECCCC------CCSCC----EEEEEETTSCEEEEE-------SSCTTCCEEETTSSTTCEEEEEEE
T ss_pred eecCCCCceeEEE-EcCccccccccccCCC----EEEEEcCCCcEEEEE-------CCCCceechhhhcCccceEEEEEc
Confidence 654 333333333 566 666 888998877655533 112225566778899999999999
Q ss_pred CCcceeeccccceecccceeee
Q 008041 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
|||. | ++++.|+++++|++.
T Consensus 594 ~~~~-l-~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 594 TPST-L-VSSGADACIKRWNVV 613 (615)
T ss_dssp ETTE-E-EEEETTSCEEEEEEC
T ss_pred CCCC-e-EEecCCceEEEEeee
Confidence 9999 8 999999999999984
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-32 Score=272.63 Aligned_cols=236 Identities=14% Similarity=0.194 Sum_probs=199.0
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
..| .+++|+|+|.+||+|+.|+.+++|++.... ....+.+|.. .+.++.|.+.
T Consensus 107 ~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~- 165 (354)
T 2pbi_B 107 TWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN------------------YLSACSFTNS- 165 (354)
T ss_dssp SCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS------------------CEEEEEECSS-
T ss_pred CCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC------------------cEEEEEEeCC-
Confidence 456 566999999999999999999999986431 1222333333 3445555543
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+..+++++.||.|++||+.+++.+..+ .+|...|.+++|+| +|++|++|+.||+|++||+++++++..+
T Consensus 166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 667999999999999999999988666 68999999999988 5689999999999999999999999999
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
.+|...|++++|+|++++|++++ ++|++||+++++.+..+..+ ...+.+++|+|+++++++++ .|+.|++||+.+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~ 315 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK 315 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence 99999999999999999999998 89999999999887777543 35789999999999999987 799999999988
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (579)
++. +..+..+...+.++.|+ |+|++|++++.||+|++|+
T Consensus 316 ~~~-----~~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSR-----VSILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred Cce-----EEEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence 763 34455666677888888 9999999999999999995
No 51
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-32 Score=277.44 Aligned_cols=273 Identities=14% Similarity=0.239 Sum_probs=221.1
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++||++ ++||+|. |++|+|||..+|++...+..+. | ...++++.|.+. +.+|+
T Consensus 111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~---------------~-~~~V~sv~fspd---------g~~la 163 (420)
T 4gga_A 111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQ---------------P-GEYISSVAWIKE---------GNYLA 163 (420)
T ss_dssp EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCS---------------T-TCCEEEEEECTT---------SSEEE
T ss_pred EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecC---------------C-CCcEEEEEECCC---------CCEEE
Confidence 489975 5888776 9999999999999887765321 1 223556666543 78899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p 169 (579)
+|+.||.|++||+.+++.+..+ .+|...+.++.+ ++..+++|+.|+.+++||.... ..+..+.+|...+..+.++|
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 9999999999999999988666 689999999887 5679999999999999998764 55677899999999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCCCE-EEEE-ecCCCeEEEEEcCCCccccceeee
Q 008041 170 DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKY-VLSS-AVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 170 ~g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~~~~-l~s~-~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+|+++++++ +.+++|+..+++ .+.....|...|.+++|+|++.. ++++ ++.|++|++||+.+++.. .
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-----~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----E
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----e
Confidence 999999998 899999998765 35667889999999999997654 4443 347999999999988633 4
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
.+..+..... ..|+ |++..+++++ .||.|++||..+++.+.
T Consensus 316 ~~~~~~~v~~-~~~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~------------------------------- 358 (420)
T 4gga_A 316 AVDAHSQVCS-ILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------- 358 (420)
T ss_dssp EEECSSCEEE-EEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred eeccccceee-eeec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE-------------------------------
Confidence 4555555544 4454 7888888775 69999999987665431
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus 359 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 359 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 394 (420)
T ss_dssp ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 345788999999999999999 999999999999984
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.2e-32 Score=281.67 Aligned_cols=306 Identities=12% Similarity=0.179 Sum_probs=235.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
++++++++|++|+.||+|++||+.+++....+.+|...+.++.|+++ + .+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---------------------------~-~l~s 178 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---------------------------G-ILVS 178 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST---------------------------T-EEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC---------------------------C-EEEE
Confidence 45557889999999999999999999999999877766665555433 3 7999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCCCce------------------
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLTGSL------------------ 151 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~v~iwd~~~~~~------------------ 151 (579)
|+.||.|++||+.+++.+..+ .+|.+.|.+++|+ ++++++++++.|+.|++||+.++..
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999988666 6899999999998 5778999999999999999987653
Q ss_pred -----eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 152 -----~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
+..+.+|...+.++ +++++++++++ |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i 334 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI 334 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence 45677788888776 57788999988 8999999999999999999999999999999999999988 79999
Q ss_pred EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCe-eEEeeeccCC
Q 008041 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT-KILSSSEDVN 303 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~ 303 (579)
++||+.+++ ++..+..+...+.++.++ +.+|++++.||.|++||+.+++........ ..... .+
T Consensus 335 ~vwd~~~~~-----~~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~ 399 (464)
T 3v7d_B 335 RIWDLENGE-----LMYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT---TF 399 (464)
T ss_dssp EEEETTTTE-----EEEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEE---EE
T ss_pred EEEECCCCc-----EEEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEE---EE
Confidence 999999876 335555666667777763 589999999999999999987655432111 11111 13
Q ss_pred cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE-EecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK-ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
+++++ .+++++ ++.++.++ ......... +..|...|.+++|+ +..+.++++.|+.+.+|-+
T Consensus 400 ~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 400 YVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred EeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 44554 666665 55544432 222222222 45688889999997 4444367776776665543
No 53
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.2e-33 Score=288.76 Aligned_cols=281 Identities=14% Similarity=0.081 Sum_probs=205.9
Q ss_pred CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEE--EEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 4 ~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
..| .|++|+| ++++||+|+.||+|+|||+.++... ..+.+|... ++++.|.|.+
T Consensus 120 ~~V--~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~------------------V~~l~f~p~~--- 176 (435)
T 4e54_B 120 RRA--TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS------------------ITGLKFNPLN--- 176 (435)
T ss_dssp SCE--EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC------------------CCEEEECSSC---
T ss_pred CCE--EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC------------------EEEEEEeCCC---
Confidence 447 5569999 5679999999999999999877543 334444444 4555665433
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+.+|++|+.||.|++||+.++...... ...+...+.+++|+|++++|++|+.||.|++||+. ++.+..+.+|.
T Consensus 177 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~ 250 (435)
T 4e54_B 177 -----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK 250 (435)
T ss_dssp -----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred -----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence 678999999999999999877653222 12344568899999999999999999999999985 66778889999
Q ss_pred CCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE---eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 160 ~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~---~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
..|++++|+|+++ ++++++ +.|++||+++.+.... ..+|..+|++++|+|+|++|++++ .|+.|++||+.++.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence 9999999999987 566776 8999999998765433 367999999999999999999998 79999999998876
Q ss_pred cccceeeeeeecCc------eeEEeEEecCCcccCCCcEEEEEEc------------CCeEEEEEcCCceeecccCCeeE
Q 008041 234 KQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISE------------TGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 234 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
... ....+.. ..+. ..+. |++..++++.. ++.|++||..+++.+...
T Consensus 330 ~~~----~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l----- 394 (435)
T 4e54_B 330 CPL----GLIPHPHRHFQHLTPIK-AAWH-----PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL----- 394 (435)
T ss_dssp SEE----EECCCCCCCCSSSCCCB-CEEC-----SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-----
T ss_pred cce----EEecccccccccceeEE-EEEc-----CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-----
Confidence 431 1111111 1111 2232 55555555532 245666666555432111
Q ss_pred EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeeccccceecc
Q 008041 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLKSK 374 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~~~ 374 (579)
..+|...|.++ +|+|||.+| ++|+ |+.+
T Consensus 395 -------------------------------------------------~~~~~~~v~s~~~fspdg~~l-asg~-d~~i 423 (435)
T 4e54_B 395 -------------------------------------------------YDPESSGISSLNEFNPMGDTL-ASAM-GYHI 423 (435)
T ss_dssp -------------------------------------------------CCSSCCCCCCEEEECTTSSCE-EEEC-SSEE
T ss_pred -------------------------------------------------eCCCCCcEEEEEEECCCCCEE-EEEc-CCcE
Confidence 11455567776 699999999 8887 7899
Q ss_pred cceeee
Q 008041 375 RGRYVQ 380 (579)
Q Consensus 375 ~~w~~~ 380 (579)
++|++.
T Consensus 424 ~iW~~~ 429 (435)
T 4e54_B 424 LIWSQQ 429 (435)
T ss_dssp EECCCC
T ss_pred EEEECC
Confidence 999985
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-32 Score=264.61 Aligned_cols=272 Identities=19% Similarity=0.228 Sum_probs=224.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++| |++++|++|+.||.|++||+.++.....+..|...+..+.|+++
T Consensus 17 h~~~v--~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 70 (313)
T 3odt_A 17 HDQDV--RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE----------------------- 70 (313)
T ss_dssp CSSCE--EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-----------------------
T ss_pred CCCCc--EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-----------------------
Confidence 45778 45599 99999999999999999999999988888766655554444443
Q ss_pred cccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
+.++++++.+|.|++|++... +....+ .+|...|.++.| +++++++++.|+.|++|| .++....+..|
T Consensus 71 ----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 71 ----KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ----TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred ----CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 788999999999999998764 334344 679999999999 577999999999999999 67888889999
Q ss_pred CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
...+.+++|+| +++.+++++ +.|++|| .++....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDV 217 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhh
Confidence 99999999998 899999888 8999999 5566777776 899999999999998 77776 799999999998763
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhh
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (579)
+..+..+...+..+.|+ |++ .|++++.||.|++||+.+++.+.
T Consensus 218 -----~~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~-------------------------- 260 (313)
T 3odt_A 218 -----LRTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ-------------------------- 260 (313)
T ss_dssp -----EEEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE--------------------------
T ss_pred -----hhhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE--------------------------
Confidence 34555566677788887 888 58999999999999987654321
Q ss_pred hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+..|...+.+++|+|||.+ ++++.|+.+++|++.
T Consensus 261 -----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 261 -----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQE 295 (313)
T ss_dssp -----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESC
T ss_pred -----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCC
Confidence 23356668999999999994 457889999999985
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=289.38 Aligned_cols=315 Identities=13% Similarity=0.136 Sum_probs=223.1
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC---CeE---EEEeccCccccccccccccccccccccccceEEee
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQV---QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
++++| .+++|+| +|++||+|+.||+|+|||+.+ +.. ...+ .| ...+.++.|.
T Consensus 62 h~~~V--~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h------------------~~~v~~~~~~ 120 (437)
T 3gre_A 62 EPNSI--TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC------------------SSTVTQITMI 120 (437)
T ss_dssp TTSCE--EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-EC------------------SSCEEEEEEC
T ss_pred CCCce--EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cC------------------CCCEEEEEEe
Confidence 35788 5559999 999999999999999999876 331 1111 12 3345666666
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEcc---CCeEEEEe--------c-CC--CCCCEEEEE--EccCCCEEEEEeCC
Q 008041 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGAD 138 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~---~~~~~~~~--------~-~~--h~~~V~~l~--~~~~~~~l~s~~~d 138 (579)
+. +.++++|+.||.|++||+. +++..... . .. +...+.++. +++++.++++++.|
T Consensus 121 ~~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 121 PN---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp TT---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CC---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 52 7789999999999999995 44433211 1 11 566777777 56889999999999
Q ss_pred CcEEEEeCCCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe----c
Q 008041 139 GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS----D 209 (579)
Q Consensus 139 ~~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s----~ 209 (579)
+.|++||+++++.+..+.. |...|++++|+|+++++++|+ |.|++||+++++.+.++. .|..+|.+++|+ |
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 9999999999999999988 788999999999999999998 899999999999999886 788899999665 4
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec--------------------------CceeEEeEEecCCcccCC
Q 008041 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--------------------------PAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 263 (579)
++.++++++ .|+.|++||+.+++.. ..+.. +...+.++.|+ +
T Consensus 272 ~~~~l~s~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~ 339 (437)
T 3gre_A 272 NSVIVVGGS-SKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------N 339 (437)
T ss_dssp TEEEEEEES-TTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------T
T ss_pred CccEEEEEc-CCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------C
Confidence 677888876 7999999999987632 11111 33335556664 5
Q ss_pred CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEe-CCCCCcee
Q 008041 264 GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSF 342 (579)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-g~~~~~~~ 342 (579)
+.+|++++.||.|++||+.+++.+............ +.+. .. .......... ........
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~ 400 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIPT-----------QV-----TANLTMLLRKMKRTSTHSV 400 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEEE-----------EE-----ETTEEEEEEECC-------
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCce---EEEE-----------Ee-----ecceEEEEEeccccccccc
Confidence 689999999999999999998776544332110000 0000 00 0011111111 00111112
Q ss_pred EEEecCCCCcEEEeecCC--cceeeccccceeccccee
Q 008041 343 QKILVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 343 ~~~~~h~~~v~~~~~s~d--g~~l~~s~s~d~~~~~w~ 378 (579)
.....|...|.+++|+++ +.+| +||+.|+.+++|+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence 344569999999999998 7788 9999999999995
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=306.84 Aligned_cols=339 Identities=10% Similarity=0.026 Sum_probs=237.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+| |++|++++.|++|+|||+.+++++..+. +...+.++.|+++
T Consensus 58 ~~~V--~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~------------------------ 109 (902)
T 2oaj_A 58 RSAI--KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDAS------------------------ 109 (902)
T ss_dssp CCCE--EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTT------------------------
T ss_pred CCCE--EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCC------------------------
Confidence 3578 4559999 8899999999999999999999888775 3334444444443
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEE----------EecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCce
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~----------~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~ 151 (579)
+.++++|+.||.|++||+.+++... ....+|.++|++++|+|+ +..+++|+.||.| +||+++++.
T Consensus 110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI 185 (902)
T ss_dssp ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence 7889999999999999999987631 123679999999999996 4689999999999 999999998
Q ss_pred eeEeecC------------------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE--e---ec---------
Q 008041 152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG--------- 197 (579)
Q Consensus 152 ~~~~~~~------------------~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~--~---~~--------- 197 (579)
+..+..| ...|++++|+|+|++|++++ |.|++||+++++++.. + ..
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 8888765 46799999999999999998 8999999999987653 2 12
Q ss_pred ----CCCCEEEEEEec----CC-CEEEEEecCC-----CeEEEEEcCC------------------Cccc---c------
Q 008041 198 ----HPGAVRFMTFSD----NG-KYVLSSAVGE-----RYIALWRTDG------------------VKKQ---S------ 236 (579)
Q Consensus 198 ----h~~~v~~l~~s~----~~-~~l~s~~~~d-----~~i~vwd~~~------------------~~~~---~------ 236 (579)
|..+|.+++|++ ++ ..+++++ .| +.+.+|++.. .+.. .
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHK-SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEE-CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCC-CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 345799999964 43 3455554 34 2677777310 0000 0
Q ss_pred -------------------c-----------eeeeee----------------ecCceeEEeEEec--------------
Q 008041 237 -------------------A-----------SCVLAM----------------EHPAVFMDCRCID-------------- 256 (579)
Q Consensus 237 -------------------~-----------~~~~~~----------------~~~~~~~~~~~~~-------------- 256 (579)
. ..++.+ ..+...+.++.++
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 0 000000 0000111222221
Q ss_pred ---------------CCcccCCCcEEEEEEcCCeEEEEEcCCceeecc--c---------CCeeEEeeeccCCccccccc
Q 008041 257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--T---------KATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 257 ---------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~ 310 (579)
...++|++++|++|+.||+|++||+.++..... + ..+...+.+.. |+|+++
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva-fspdg~-- 501 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS-FAAETL-- 501 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE-EETTTT--
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE-ecCCCC--
Confidence 012348999999999999999999988742110 0 01112223322 788888
Q ss_pred chhhhhccccceecCCceEEEEEeCC-------C---------C---------------------CceeEEEecCCCCcE
Q 008041 311 TAAIFAAKLQDIVKPASVHTFVAYGL-------L---------L---------------------KPSFQKILVNSGEDI 353 (579)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~g~-------~---------~---------------------~~~~~~~~~h~~~v~ 353 (579)
.+++|+.|+.+++++..-...++. . . ..+...+.+|...|.
T Consensus 502 --~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~ 579 (902)
T 2oaj_A 502 --ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS 579 (902)
T ss_dssp --EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred --eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence 899999999777765321100000 0 0 023556778999999
Q ss_pred EEeecCCcceeeccccceecccceeeee
Q 008041 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
+++||||| +| ++|+.|+++++|++..
T Consensus 580 svafSpdG-~l-Asgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 580 AINNSNIG-FV-GIAYAAGSLMLIDRRG 605 (902)
T ss_dssp EEEECBTS-EE-EEEETTSEEEEEETTT
T ss_pred EEEecCCc-EE-EEEeCCCcEEEEECCC
Confidence 99999999 98 9999999999999854
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=270.44 Aligned_cols=252 Identities=15% Similarity=0.191 Sum_probs=199.1
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
..+| .+++|+|+|++||+|+.|++|+|||..++. +...+.+|...+.++.|+++
T Consensus 61 ~~~v--~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---------------------- 116 (345)
T 3fm0_A 61 QRTV--RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---------------------- 116 (345)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----------------------
T ss_pred CCcE--EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----------------------
Confidence 4578 455999999999999999999999988764 56677777666665555554
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~ 156 (579)
+.+|++|+.|+.|++||+.++.. ......+|...|.+++|+|++++|++++.|++|++||..+++ +..++.
T Consensus 117 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 117 -----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp -----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred -----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 78899999999999999987642 223447899999999999999999999999999999998775 456788
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---------------eeeEEeec-CCCCEEEEEEecCCCEEEEEe
Q 008041 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~---------------~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~ 218 (579)
+|...|.+++|+|+|++|++++ ++|++||.... +++.++.+ |...|.+++|+|++..|++++
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 9999999999999999999998 89999996321 33455555 889999999999999999988
Q ss_pred cCCCeEEEEEcCCCccccc---eee-eeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceeecc
Q 008041 219 VGERYIALWRTDGVKKQSA---SCV-LAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
.|+.|++|+......... ... .....+...+.++.|+ |++ .+|++++.||+|++|+..+.+.+..
T Consensus 272 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 272 -GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp -TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC------
T ss_pred -CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 799999999876542211 011 1122455667888887 887 5999999999999999988776543
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=277.79 Aligned_cols=300 Identities=12% Similarity=0.073 Sum_probs=227.2
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| +|++||+|+.||.|+|||+.++.....+....... . ......+| ...+.++.|.+.+
T Consensus 42 h~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~v~~~~~~~~~--- 111 (408)
T 4a11_B 42 HGGGI--NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--I--GRDHPDVH-RYSVETVQWYPHD--- 111 (408)
T ss_dssp CSSCE--EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--E--CTTCTTCC-SSCEEEEEECTTC---
T ss_pred cCCcE--EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--c--cccccccC-CCcEEEEEEccCC---
Confidence 46788 5569999 99999999999999999999876443332100000 0 00000112 3456777787643
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
+.++++++.+|.|++||+.+++....+ .+...+.++.|+|. +.++++++.|+.|++||+.+++.+..+..
T Consensus 112 -----~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 112 -----TGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp -----TTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred -----CcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 667999999999999999999987666 37788999999984 44899999999999999999999999999
Q ss_pred CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCe-eeEEe---------------ecCCCCEEEEEEecCCCEEEEEe
Q 008041 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~-~~~~~---------------~~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
|...|.+++|+|+++ ++++++ |.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999999999998 477776 899999998765 34444 57889999999999999999988
Q ss_pred cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEee
Q 008041 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (579)
.|+.|++||+.+++....................... ..+..+++++.||.|++||+.+++.+.
T Consensus 265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~---------- 328 (408)
T 4a11_B 265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT---------- 328 (408)
T ss_dssp -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE----------
T ss_pred -CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee----------
Confidence 7999999999987643110000111111122222222 445667778889999999987664431
Q ss_pred eccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008041 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (579)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (579)
.+.+|...|.+++|+|||.+| ++++.|+.+++|+
T Consensus 329 ---------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~ 362 (408)
T 4a11_B 329 ---------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWV 362 (408)
T ss_dssp ---------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred ---------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEe
Confidence 234677889999999999999 9999999999999
Q ss_pred ee
Q 008041 379 VQ 380 (579)
Q Consensus 379 ~~ 380 (579)
+.
T Consensus 363 ~~ 364 (408)
T 4a11_B 363 PS 364 (408)
T ss_dssp EC
T ss_pred CC
Confidence 85
No 59
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-32 Score=278.20 Aligned_cols=244 Identities=16% Similarity=0.224 Sum_probs=199.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-------EEEEeccCccccccccccccccccccccccceEEeee
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
...| .+++|+|+|++||+|+.|+.++|||+.+.. ....+.+|...+. ++.|.+
T Consensus 108 ~~~v--~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~------------------~~~~~~ 167 (380)
T 3iz6_a 108 CPWV--MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS------------------SCQYVP 167 (380)
T ss_dssp CTTC--CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC------------------CCBCCS
T ss_pred CCCE--EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE------------------EEEEec
Confidence 4567 455999999999999999999999987542 1222334443333 334443
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-CC
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TG 149 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~-~~ 149 (579)
.+ +..+++|+.|+.|++||+.+++.+..+ ..+|...|.++.|++ ++++|++|+.|++|++||++ .+
T Consensus 168 ~~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 168 DQ--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp SS--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred CC--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 32 456999999999999999999887554 257999999999987 88999999999999999998 55
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-------CCEEEEEEecCCCEEEEEecC
Q 008041 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~s~~~~ 220 (579)
+.+..+.+|.+.|.+++|+|+|++|++|+ ++|++||+++++.+..+..+. ..|.+++|+|+|+++++++ .
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 318 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-S 318 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-T
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-C
Confidence 78888999999999999999999999998 899999999999988876543 2489999999999999987 7
Q ss_pred CCeEEEEEcCCCccccceeeeee----ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 221 ERYIALWRTDGVKKQSASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
|+.|++||+..++.. ..+ ..+...+.++.|+ |+|.+|++|+.||+|++|++...+
T Consensus 319 dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 319 NGDCYVWDTLLAEMV-----LNLGTLQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEETTTCCEE-----EEECCSCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEECCCCceE-----EEEecccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999877633 222 3456667888888 999999999999999999987654
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=269.50 Aligned_cols=242 Identities=10% Similarity=0.103 Sum_probs=186.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccCccccccccccccccccccccccceEEee
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
+.++| .+++|+|+|++||+|+.|++|+|||... .++...+.+|...+.++.|+++
T Consensus 57 h~~~v--~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---------------- 118 (330)
T 2hes_X 57 HKKAI--RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND---------------- 118 (330)
T ss_dssp CCSCE--EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT----------------
T ss_pred ccCCE--EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----------------
Confidence 35678 4559999999999999999999999853 3456666666665555555544
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 008041 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG- 149 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~- 149 (579)
+.+|++|+.|+.|++||+... +++. .+.+|...|.+++|+|++++|++++.|++|++||..++
T Consensus 119 -----------g~~las~s~D~~v~iwd~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 119 -----------GYYLATCSRDKSVWIWETDESGEEYECIS-VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp -----------SCEEEEEETTSCEEEEECCTTCCCCEEEE-EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred -----------CCEEEEEeCCCEEEEEeccCCCCCeEEEE-EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 788999999999999999532 3343 34789999999999999999999999999999998776
Q ss_pred -ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--------eeeEEeec-CCCCEEEEEEecCCCEEE
Q 008041 150 -SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 150 -~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~--------~~~~~~~~-h~~~v~~l~~s~~~~~l~ 215 (579)
+++..+.+|...|.+++|+|+ +..+++++ ++|++||++++ .....+.+ |...|.+++|++++ +|+
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 678889999999999999998 67888887 89999998764 34555555 89999999999765 778
Q ss_pred EEecCCCeEEEEEcCCCccccceeeee--eecCceeEEeEEecCCcccC--CCcEEEEEEcCCeEEEEEcCC
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLA--MEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+++ .|+.|++|+...++.. .... ..|....+.++.|+ | ++++|++++.||+|++||+++
T Consensus 266 s~~-~dg~v~iw~~~~~~~~---~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 266 SVG-ADGVLAVYEEVDGEWK---VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEE-TTSCEEEEEEETTEEE---EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred EEe-CCCEEEEEEcCCCceE---EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence 887 7999999998765321 1112 22443367777787 7 689999999999999999764
No 61
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.2e-32 Score=267.84 Aligned_cols=241 Identities=14% Similarity=0.163 Sum_probs=197.0
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|++.++++|+.|++|++||+.+++....+.+|...+.++.|+++
T Consensus 76 ~~~V--~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~------------------------ 129 (343)
T 2xzm_R 76 NHFV--SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD------------------------ 129 (343)
T ss_dssp SSCE--EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC------------------------
Confidence 4567 55599999999999999999999999999999999888777776666665
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCc
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~----------~~l~s~~~d~~v~iwd~~~~~ 150 (579)
+.++++++.||.|++||+...... .. ..+|...|.+++|+|++ .++++++.|+.|++|| ..++
T Consensus 130 ---~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 130 ---NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp ---TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTE
T ss_pred ---CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCc
Confidence 788999999999999999854332 22 23789999999999987 7899999999999999 4677
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
....+.+|...|.+++|+|+|++|++|+ +.|++||+.+ ......+ .+...|.+++|+|++++++++ .|+.|++|
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~--~d~~v~iw 281 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG--TDQGVKIF 281 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE--ESSCEEEE
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE--CCCCEEEE
Confidence 7788999999999999999999999998 8999999954 4444444 356679999999999887654 47889999
Q ss_pred EcCCCccccceeeeeee-----------cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 228 RTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 228 d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
++.+.+... +..+. .+...+.++.|+ |+|++|++|+.||.|++|+++++.
T Consensus 282 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 282 NLMTQSKAP---VCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ESSSCCSCS---EEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EeCCCCCCc---eEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence 998765431 11111 234456778887 999999999999999999987654
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.8e-32 Score=293.21 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=251.6
Q ss_pred CCc-ccceEEEEcc--CCCEEEEEeCCCcEEEEECCCC--------eEEEEeccCccccccccccccccccccccccceE
Q 008041 3 SSN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~-V~~l~~~fsp--dg~~lasg~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++ | .+++|+| +|++||+|+.||.|+|||+.++ .....+..|...+..+.|+++
T Consensus 63 ~~~~v--~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------------- 127 (615)
T 1pgu_A 63 GSSVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE------------- 127 (615)
T ss_dssp TTSCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-------------
T ss_pred CCceE--EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC-------------
Confidence 455 7 5569999 9999999999999999999755 666667666655555555544
Q ss_pred EeeecccccccccCCcEEEEEECC----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeC
Q 008041 72 KWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDP 146 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~ 146 (579)
+.++++++.+ +.|++|| .++.+..+ .+|...|++++|+|+++ .+++++.|+.|++||+
T Consensus 128 --------------~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 128 --------------GRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp --------------SSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred --------------CCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence 7788998887 6788888 55565455 68999999999999998 7999999999999999
Q ss_pred CCCceeeEeecCCC---CeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEe-e---cCCCCEEEEEEecCCCEEEE
Q 008041 147 LTGSLLGKFRASTK---GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF-S---GHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 147 ~~~~~~~~~~~~~~---~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~-~---~h~~~v~~l~~s~~~~~l~s 216 (579)
.+++.+..+.+|.. .|.+++|+|+ ++++++++ |.|++||+++++.+..+ . +|...|.++.|+ +++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 99999999999999 9999999999 99999887 89999999999999998 6 899999999999 9999999
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecC----ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
++ .|+.|++||+.+++.. ..+..+ ...+..+.+ +++.++++++.||.|++||+.+++.+.....
T Consensus 270 ~~-~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 270 VG-ADATIRVWDVTTSKCV-----QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp EE-TTSEEEEEETTTTEEE-----EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred Ec-CCCcEEEEECCCCcEE-----EEEcCCCCcccCceeEEEe------CCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 88 7999999999987633 333332 233444445 4789999999999999999999887776665
Q ss_pred eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008041 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~ 372 (579)
+...+.+.. + ++ +++++.++.++.++.. .++ ..|...|.+++| +++..+ ++++.|+
T Consensus 338 ~~~~v~~~~-~-~~-------l~~~~~dg~i~~w~~~-----------~~~--~~~~~~v~~~~~-~~~~~l-~~~~~d~ 393 (615)
T 1pgu_A 338 HNKGITALT-V-NP-------LISGSYDGRIMEWSSS-----------SMH--QDHSNLIVSLDN-SKAQEY-SSISWDD 393 (615)
T ss_dssp CSSCEEEEE-T-TT-------TEEEETTSCEEETTTT-----------EEE--CCCCSCEEEEEC-CSTTCC-EEEETTT
T ss_pred CCCCEEEEE-e-cC-------cEEECCCCeEEEEEch-----------hhc--CcccCceEEEEE-CCCcEE-EEEeCCC
Confidence 544444433 2 22 8888888877776633 232 678999999999 667788 8999999
Q ss_pred cccceeeee
Q 008041 373 SKRGRYVQN 381 (579)
Q Consensus 373 ~~~~w~~~~ 381 (579)
.+++|++..
T Consensus 394 ~i~~~~~~~ 402 (615)
T 1pgu_A 394 TLKVNGITK 402 (615)
T ss_dssp EEEETTEEE
T ss_pred CEEEEEccc
Confidence 999999853
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.6e-32 Score=267.22 Aligned_cols=275 Identities=13% Similarity=0.192 Sum_probs=219.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE---ec--cCccccccccccccccccccccccceEEeeec
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE---FA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+.++| .+++|+|++++|++++ ||.|++||+.++..... +. .+ ...+.++.|.+.
T Consensus 50 h~~~v--~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~ 108 (337)
T 1gxr_A 50 HGEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR------------------DNYIRSCKLLPD 108 (337)
T ss_dssp CSSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT------------------TSBEEEEEECTT
T ss_pred CCCce--EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCC------------------CCcEEEEEEcCC
Confidence 35678 5559999999999999 99999999987653221 11 22 234556666653
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
+.++++++.+|.|++||+.+++ .... ..+|...|.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 109 ---------~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 178 (337)
T 1gxr_A 109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178 (337)
T ss_dssp ---------SSEEEEEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ---------CCEEEEEcCCCcEEEEECCCCCcceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee
Confidence 7789999999999999999887 3333 367999999999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
+..|...+.+++|+|+++++++++ |.|++||+++++.+..+. |...+.+++|+|+++++++++ .|+.|++||+...
T Consensus 179 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP 256 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCC
Confidence 999999999999999999999987 899999999999887775 788999999999999999987 7999999999887
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccch
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (579)
+.. ....+...+..+.|+ |++++|++++.||.|++||+.+++.+....... .+.+. .++++++
T Consensus 257 ~~~------~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~-~~s~~~~---- 319 (337)
T 1gxr_A 257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSC-DISVDDK---- 319 (337)
T ss_dssp CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEE-EECTTSC----
T ss_pred CeE------EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEE-EECCCCC----
Confidence 532 334455567778887 999999999999999999999987764322111 11111 1466666
Q ss_pred hhhhccccceecCC
Q 008041 313 AIFAAKLQDIVKPA 326 (579)
Q Consensus 313 ~i~~~~~~~~~~~~ 326 (579)
.+++++.++.++.+
T Consensus 320 ~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 320 YIVTGSGDKKATVY 333 (337)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEecCCCeEEEE
Confidence 77888877655543
No 64
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-32 Score=274.11 Aligned_cols=239 Identities=12% Similarity=0.105 Sum_probs=187.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccCccccccccccccccccccccccceEEeeecccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.| .+++|+|++.++ +++.||+|+|||+.+++..... .+|.. .+.++.|.+.
T Consensus 95 ~~V--~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~------------------~V~~v~~spd--- 150 (357)
T 4g56_B 95 AGV--TDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDD------------------IVKTLSVFSD--- 150 (357)
T ss_dssp SCE--EEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSS------------------CEEEEEECSS---
T ss_pred CCE--EEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCC------------------CEEEEEECCC---
Confidence 457 556999998654 6778999999999988754322 23333 3455555543
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR-- 156 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~-- 156 (579)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++. ++++++.|++|++||+++++....+.
T Consensus 151 ------g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 151 ------GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 788999999999999999999988766 68999999999999875 68999999999999999988776544
Q ss_pred cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCC
Q 008041 157 ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+...+.+++|+|++ .++++|+ +.|++||+++++.+.++.+|...|++++|+|++. +|++++ .|++|++||++++
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~ 302 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFS 302 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSC
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCC
Confidence 456689999999975 5777776 8999999999999999999999999999999874 677776 7999999999887
Q ss_pred ccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEcCCce
Q 008041 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
+. +..+.| ...+..++|+ | ++.+|++++.||+|++|++.+..
T Consensus 303 ~~-----~~~~~H-~~~V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 303 EV-----FRDLSH-RDFVTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EE-----EEECCC-SSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECC---
T ss_pred cE-----eEECCC-CCCEEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCCC
Confidence 53 234444 4456777887 7 78999999999999999986543
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.9e-33 Score=271.80 Aligned_cols=246 Identities=14% Similarity=0.164 Sum_probs=194.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
++++| .+++|+|+|++||+|+.|++|+|||+.++. ....+.+|...+.++.|+++ .+
T Consensus 12 H~~~V--~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~-----------------~~-- 70 (316)
T 3bg1_A 12 HEDMI--HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHP-----------------MY-- 70 (316)
T ss_dssp --CCE--EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCG-----------------GG--
T ss_pred ccCeE--EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCC-----------------CC--
Confidence 35678 555999999999999999999999998875 45667766665554444322 11
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce---e
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---L 152 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~~---~ 152 (579)
+.+|++|+.|+.|++||+.+++ .... ..+|...|++++|+|+ +.+|++|+.|++|++||+..+.. .
T Consensus 71 ------~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 71 ------GNILASCSYDRKVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp ------SSCEEEEETTSCEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred ------CCEEEEEECCCEEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence 5679999999999999999874 3333 3689999999999998 78999999999999999987632 3
Q ss_pred eEeecCCCCeeEEEEccC-----------------CCEEEEEC--CeEEEEECCCC---eeeEEeecCCCCEEEEEEecC
Q 008041 153 GKFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN 210 (579)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~-----------------g~~l~~~~--~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~s~~ 210 (579)
..+.+|...|.+++|+|+ +++|++|+ +.|++||++.+ +.+.++.+|...|.+++|+|+
T Consensus 144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~ 223 (316)
T 3bg1_A 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS 223 (316)
T ss_dssp CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence 456788889999999997 46888887 89999999765 467788999999999999998
Q ss_pred C----CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 211 G----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 211 ~----~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
+ ++|++++ .|++|++|++........ ....+..+...+..+.|+ |++.+|++++.||+|++|+..
T Consensus 224 ~~~~~~~las~s-~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCS-QDGRVFIWTCDDASSNTW-SPKLLHKFNDVVWHVSWS-----ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEE-TTCEEEEEECSSTTCCCC-BCCEEEECSSCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEc-CCCeEEEEEccCccccch-hhhhhhcCCCcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence 6 7888887 799999999976321100 011122334556677887 999999999999999999965
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.2e-31 Score=259.40 Aligned_cols=273 Identities=15% Similarity=0.239 Sum_probs=216.4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
++||+++ +||+|. |++|+|||+.+|++...++.+.. ...++++.|.+. +.+++
T Consensus 31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~----------------~~~V~~v~~~~~---------~~~l~ 83 (318)
T 4ggc_A 31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQP----------------GEYISSVAWIKE---------GNYLA 83 (318)
T ss_dssp EEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCST----------------TCCEEEEEECTT---------SSEEE
T ss_pred EEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCC----------------CCeEEEEEECCC---------CCEEE
Confidence 5999986 787765 99999999999999887753221 223445555443 78899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p 169 (579)
+|+.||.|++||+.+++.+..+ .+|...+.++.+ ++..+++++.++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999999999988666 679988887665 5679999999999999998765 45667889999999999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEE--EEecCCCeEEEEEcCCCccccceeee
Q 008041 170 DGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 170 ~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~--s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+++++++++ +.|++||+++++. ......|.+.|.++.++|++..++ .+++.++.|++||....... .
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~ 235 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S 235 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----E
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----c
Confidence 999999998 8999999998653 445567889999999999876433 23447899999999887533 2
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccc
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (579)
...+... +....+. |++..+++++ .||.|++||+++++.+.
T Consensus 236 ~~~~~~~-v~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~------------------------------- 278 (318)
T 4ggc_A 236 AVDAHSQ-VCSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------- 278 (318)
T ss_dssp EEECSSC-EEEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred cccceee-eeeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE-------------------------------
Confidence 3333333 4455565 7888877765 69999999987665432
Q ss_pred cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
.+.+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus 279 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 279 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 314 (318)
T ss_dssp ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 344788899999999999999 999999999999983
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.8e-31 Score=272.05 Aligned_cols=272 Identities=16% Similarity=0.244 Sum_probs=221.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+++++|++|++|+.||.|++||..+++....+.+|...+. ++.| + +.++++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~------------------~l~~---~--------~~~l~s 188 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------------------CLQY---D--------ERVIIT 188 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------------------EEEC---C--------SSEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE------------------EEEE---C--------CCEEEE
Confidence 4556899999999999999999999999998887765554 3443 1 678999
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---eEeecCCCCeeEEEEc
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS 168 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~v~~l~~~ 168 (579)
|+.||.|++||+.+++.+..+ .+|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 999999999999999988666 6799999999996 459999999999999999988765 667889999999999
Q ss_pred cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC
Q 008041 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (579)
Q Consensus 169 p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (579)
+++++++|+ |.|++||+++++.+.++.+|...|.++.|+ ++++++++ .|+.|++||+++++. +..+..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence 678888887 899999999999999999999999999994 67888887 799999999998763 3455555
Q ss_pred ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCC
Q 008041 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (579)
...+.++.+ ++.+|++|+.||.|++||+.+++.... +.
T Consensus 336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~---------------~~-------------------- 373 (435)
T 1p22_A 336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRA---------------PA-------------------- 373 (435)
T ss_dssp SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTS---------------CT--------------------
T ss_pred cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCccc---------------cc--------------------
Confidence 555666654 678999999999999999865532100 00
Q ss_pred ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.......+.+|...|.+++| ||.+| ++++.|+++++|++.+
T Consensus 374 -----------~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 374 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN 414 (435)
T ss_dssp -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred -----------cchheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence 00122355678889999999 88899 9999999999999853
No 68
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.1e-31 Score=257.43 Aligned_cols=239 Identities=21% Similarity=0.328 Sum_probs=201.8
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|++++|++|+.||.|++||+.+++++..+.+|...+.++.|+++
T Consensus 65 ~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 118 (312)
T 4ery_A 65 KLGI--SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ------------------------ 118 (312)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------------
T ss_pred CCce--EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------------
Confidence 4567 55599999999999999999999999999999988877665555555444
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKG 161 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~ 161 (579)
+.++++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|+++++++++.|+.|++||+.+++.+..+. .+...
T Consensus 119 ---~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 119 ---SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp ---SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred ---CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 788999999999999999999887666 6799999999999999999999999999999999998887764 45568
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE--EEEe-cCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~--l~~s-~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
+.+++|+|+++++++++ +.|++||+++++.+..+.+|...+.. ..++ +++.++++++ .|+.|++||+.+++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~-- 271 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI-- 271 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE--
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh--
Confidence 99999999999999988 89999999999999999988765433 2344 6778888877 799999999988763
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcC
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 282 (579)
+..+..+...+..+.|+ |++.++++++ .||+|++|+.+
T Consensus 272 ---~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ---VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred ---hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence 34555566666777787 9999999997 59999999864
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-31 Score=297.35 Aligned_cols=244 Identities=14% Similarity=0.125 Sum_probs=206.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|+|++|++|+.||.|+|||+.+++....+.+|...+.++.|+++
T Consensus 54 ~~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------- 108 (814)
T 3mkq_A 54 TETPV--RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT----------------------- 108 (814)
T ss_dssp CSSCE--EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred CCCcE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC-----------------------
Confidence 35678 55599999999999999999999999999999988877766665555554
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~- 159 (579)
+..+++++.+|.|++||+.++........+|...|.+++|+| +++.+++++.||.|++||+.++.....+..+.
T Consensus 109 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~ 184 (814)
T 3mkq_A 109 ----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184 (814)
T ss_dssp ----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred ----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence 778999999999999999988444445578999999999999 88899999999999999999888887777655
Q ss_pred CCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 160 KGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 160 ~~v~~l~~~p--~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
..+.+++|+| +++++++++ |.|++||+++++.+.++.+|...|.+++|+|+++++++++ .||.|++||+.+++.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~- 262 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKV- 262 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSE-
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE-
Confidence 7999999999 999999998 8999999999999999999999999999999999999988 799999999988763
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcE-EEEEEcCCeEEEEEcCCce
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~ 285 (579)
...+..+...+.++.|+ |++.. +++++.++.+.+|++....
T Consensus 263 ----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 263 ----EKTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp ----EEEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCS
T ss_pred ----EEEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCC
Confidence 34555555667777777 88763 3555567788899876543
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=278.01 Aligned_cols=246 Identities=13% Similarity=0.162 Sum_probs=204.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
.++| .+++|+|++++|++|+.||.|++||+.+ ......+.+|...+. ++.|.+.+
T Consensus 67 ~~~v--~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~- 125 (416)
T 2pm9_A 67 DSKF--NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK------------------TVKFNAKQ- 125 (416)
T ss_dssp SSCE--EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC------------------EEEECSSS-
T ss_pred CCce--EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE------------------EEEEcCCC-
Confidence 4567 5569999999999999999999999987 347777766655444 45554432
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCe------EEEE--ecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 008041 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWR--LSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~--~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~ 149 (579)
+.++++++.||.|++||+.+++ .... ...+|...|.+++|+|+ +.++++++.|+.|++||++++
T Consensus 126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 5679999999999999999886 3222 23578999999999999 788999999999999999999
Q ss_pred ceeeEeecC------CCCeeEEEEccCC-CEEEEEC--C---eEEEEECCCC-eeeEEee-cCCCCEEEEEEec-CCCEE
Q 008041 150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV 214 (579)
Q Consensus 150 ~~~~~~~~~------~~~v~~l~~~p~g-~~l~~~~--~---~i~vwd~~~~-~~~~~~~-~h~~~v~~l~~s~-~~~~l 214 (579)
+.+..+..+ ...|.+++|+|++ .++++++ + .|++||++++ +.+..+. +|...|.+++|+| ++++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 999888876 6799999999997 5777777 5 9999999986 6677787 8999999999999 89999
Q ss_pred EEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC-cEEEEEEcCCeEEEEEcCCceee
Q 008041 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
++++ .|+.|++||+.+++. +..+..+...+..+.|+ |++ .+|++++.||.|++||+.++...
T Consensus 279 ~s~~-~dg~v~~wd~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 279 LSSG-RDNTVLLWNPESAEQ-----LSQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEE-SSSEEEEECSSSCCE-----EEEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEe-CCCCEEEeeCCCCcc-----ceeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9988 799999999998763 34555666667778887 888 89999999999999999887644
No 71
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.7e-31 Score=261.93 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=203.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----eEEEEeccCccccccccccccccccccccccceEEeeecc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 77 (579)
++++| .+++|+|+|++||+|+.||.|+|||+.++ +....+.+|...+ +++.|.+..
T Consensus 10 H~~~v--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~ 69 (351)
T 3f3f_A 10 HDDLV--HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI------------------VAIDWASPE 69 (351)
T ss_dssp CSSCE--EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCE------------------EEEEECCGG
T ss_pred cccce--eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcE------------------EEEEEcCCC
Confidence 46788 55599999999999999999999999876 4556666555444 455555431
Q ss_pred cccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeC
Q 008041 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~ 146 (579)
++.+|++|+.||.|++||+.++ +.+..+ .+|...|.+++|+|+ ++++++++.||.|++||+
T Consensus 70 -------d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 70 -------YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp -------GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred -------CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 0678999999999999999987 334344 679999999999999 999999999999999999
Q ss_pred CCCceeeEee-------------cCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEE
Q 008041 147 LTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMT 206 (579)
Q Consensus 147 ~~~~~~~~~~-------------~~~~~v~~l~~~p~---g~~l~~~~--~~i~vwd~~~~~~--~~~~~~h~~~v~~l~ 206 (579)
++++.+..+. .|...+.+++|+|+ +..+++++ +.+.+|+...++. +..+.+|...|.+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence 9887655543 56779999999997 88998888 7887787777664 777889999999999
Q ss_pred EecCC----CEEEEEecCCCeEEEEEcCCCccc-----------------------------------------cceeee
Q 008041 207 FSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCVL 241 (579)
Q Consensus 207 ~s~~~----~~l~s~~~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~~ 241 (579)
|+|++ ++|++++ .|+.|++||++..... ....+.
T Consensus 222 ~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp ECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred ECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 99998 7888887 7999999999864210 012344
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
.+..+...+..+.|+ |++++|++++.||.|++||+.+++.+.
T Consensus 301 ~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred EEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchh
Confidence 455566677888888 999999999999999999999876654
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.6e-31 Score=265.31 Aligned_cols=278 Identities=14% Similarity=0.122 Sum_probs=219.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+.++| .+++|+|+|++|++|+.||.|+|||+.++. ....+..|.. .+.++.|.+.
T Consensus 10 h~~~v--~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~-- 67 (342)
T 1yfq_A 10 PKDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH------------------PLLCCNFIDN-- 67 (342)
T ss_dssp CSSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS------------------CEEEEEEEES--
T ss_pred CCCcE--EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC------------------ceEEEEECCC--
Confidence 45678 556999999999999999999999998876 2233333333 4556666653
Q ss_pred ccccccCCc-EEEEEECCCeEEEEEc-cCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------
Q 008041 79 KKKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------ 148 (579)
Q Consensus 79 ~~~~~~~~~-~l~~~~~~g~i~iwd~-~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~------ 148 (579)
+. ++++|+.+|.|++||+ .+++. ....+ |...|.+++|+| ++++++++.|+.|++||+++
T Consensus 68 -------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 68 -------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp -------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred -------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence 67 8999999999999999 88766 33467 999999999999 99999999999999999987
Q ss_pred ---CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-Cee--eEEeecCCCCEEEEEEec-CCCEEEEEec
Q 008041 149 ---GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAV 219 (579)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s~~~ 219 (579)
++++..+. |...|.+++|+|++ +++++ +.|++||+++ +.. ......|...|.+++|+| +++++++++
T Consensus 138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~- 213 (342)
T 1yfq_A 138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS- 213 (342)
T ss_dssp EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence 77777777 88899999999988 55555 8999999998 543 334557889999999999 999999988
Q ss_pred CCCeEEEEEcCCC--ccccceeeeeeecCc---------eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 220 GERYIALWRTDGV--KKQSASCVLAMEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 220 ~d~~i~vwd~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
.|+.|++|+++.. ... ......+..+. ..+..+.|+ |++++|++++.||.|++||+.+++.+.
T Consensus 214 ~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTSEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhHhh
Confidence 7999999999876 100 00122333332 367778887 999999999999999999988765432
Q ss_pred ccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecc
Q 008041 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMS 367 (579)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s 367 (579)
. +.+| ...|.+++ |||.+| ++
T Consensus 288 ~-------------------------------------------------------~~~~h~~~v~~~~--~~~~~l-~s 309 (342)
T 1yfq_A 288 N-------------------------------------------------------FAKFNEDSVVKIA--CSDNIL-CL 309 (342)
T ss_dssp E-------------------------------------------------------CCCCSSSEEEEEE--ECSSEE-EE
T ss_pred h-------------------------------------------------------hhcccCCCceEec--CCCCeE-EE
Confidence 1 1244 66788888 999999 99
Q ss_pred ccceec-ccceee
Q 008041 368 QSLLKS-KRGRYV 379 (579)
Q Consensus 368 ~s~d~~-~~~w~~ 379 (579)
++.|++ .+.++.
T Consensus 310 ~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 310 ATSDDTFKTNAAI 322 (342)
T ss_dssp EEECTHHHHCSSS
T ss_pred EecCCcccccccc
Confidence 999998 666653
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-31 Score=272.10 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=198.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
..|+|+|++||+|+.||.|+|||+.+++....+.+|...+.++.|+++ +.+++
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------~~~l~ 155 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---------------------------GEALI 155 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---------------------------SSEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC---------------------------CCEEE
Confidence 378999999999999999999999999998887777666665555554 77899
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC---CCCee----
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS---- 163 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~v~---- 163 (579)
+|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|+.|++||+++++.+..+..+ ...+.
T Consensus 156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 9999999999999999887666 689999999999999999999999999999999999998888753 33444
Q ss_pred -----------------EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCC-EEEEEecCCC
Q 008041 164 -----------------CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER 222 (579)
Q Consensus 164 -----------------~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~-~l~s~~~~d~ 222 (579)
+++|+|+|+++++++ |.|++||+++++.+..+. +|...|.+++|+|+++ +|++++ .|+
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg 313 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG 313 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence 455578999999988 899999999998877764 5889999999999999 888887 799
Q ss_pred eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.|++||+++++.. ......++...+.++++ +++.+|++++.||.|++|++...
T Consensus 314 ~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 314 MLAQWDLRSPECP---VGEFLINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEEETTCTTSC---SEEEEESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred eEEEEEcCCCcCc---hhhhhccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence 9999999987542 11222345666777766 57889999999999999998764
No 74
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-31 Score=266.82 Aligned_cols=247 Identities=13% Similarity=0.207 Sum_probs=203.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++|++|+.||.|++||+.+++....+.+|... +.++.|.
T Consensus 134 ~~~v--~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------v~~~~~~-------- 185 (401)
T 4aez_A 134 STYV--ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------------VGCLSWN-------- 185 (401)
T ss_dssp TCCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------------EEEEEEE--------
T ss_pred CCCE--EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------------eEEEEEC--------
Confidence 4677 55699999999999999999999999999999888765543 3455552
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
+..+++|+.+|.|++||+...........+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 56899999999999999995443334446899999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCcccc
Q 008041 163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS 236 (579)
Q Consensus 163 ~~l~~~p~g~-~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~~d~~i~vwd~~~~~~~~ 236 (579)
.+++|+|++. ++++++ +.|++||+++++.+..+. |...|.+++|+|+++++++++ ..|+.|++|++.+++..
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~- 340 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT- 340 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence 9999999775 555542 899999999999988886 678899999999999998853 36999999999886533
Q ss_pred ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
....+..+...+..+.|+ |++.+|++++.||.|++||+.+++.+..
T Consensus 341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC------
T ss_pred --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 334445556667777887 9999999999999999999998877654
No 75
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=272.56 Aligned_cols=274 Identities=11% Similarity=0.131 Sum_probs=223.3
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++| .+++|+|+|++|++|+.||.|++|| .++.....+..|...+..+.|+++
T Consensus 108 ~~~v--~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 160 (425)
T 1r5m_A 108 TNQV--TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD------------------------ 160 (425)
T ss_dssp CBCE--EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT------------------------
T ss_pred CCce--EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC------------------------
Confidence 3478 5669999999999999999999999 678888888776665555555444
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC---------------EEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~---------------V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
+.++++++.+|.|++||+.+++.+..+ ..|... +.++.|+|++ .+++++.|+.|++||+.
T Consensus 161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 161 ---GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp ---SSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred ---CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 778999999999999999999987666 445555 9999999975 58899999999999999
Q ss_pred CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
+++.+..+..|...|.+++|+|+++++++++ +.|++||+++++.+..+.+|...|.++.|+|++ ++++++ .|+.|+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~ 313 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR 313 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence 9999999999999999999999999999988 899999999999999999999999999999999 888887 799999
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce--------------------
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-------------------- 285 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------- 285 (579)
+||+.+++. +..+..+...+..+.|+ |++.+|++++.||.|++||+.+++
T Consensus 314 i~d~~~~~~-----~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 314 LWSLKQNTL-----LALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTTTEE-----EEEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred EEECCCCcE-----eEecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence 999988763 34455556667778887 999999999999999999998887
Q ss_pred eecccCCeeE--EeeeccCCcccccccchhhhhccccceecC
Q 008041 286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (579)
Q Consensus 286 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (579)
.+........ .+.... ++++++ .+++++.++.++.
T Consensus 384 ~~~~~~~~~~~~~v~~~~-~s~~~~----~l~~~~~dg~i~i 420 (425)
T 1r5m_A 384 LYASYQSSQDNDYIFDLS-WNCAGN----KISVAYSLQEGSV 420 (425)
T ss_dssp EEEEECCTTCCCCEEEEE-ECTTSS----EEEEEESSSCCEE
T ss_pred hhhhhcCcccCCceEEEE-ccCCCc----eEEEEecCceEEE
Confidence 4544443322 222222 566666 6777777665444
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-31 Score=264.75 Aligned_cols=250 Identities=16% Similarity=0.200 Sum_probs=203.2
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.++| .+++|+|+|++||+|+.||.|+|||+. +++....+.+|...+. ++.|.+..
T Consensus 10 h~~~v--~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~-- 67 (379)
T 3jrp_A 10 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW------------------RVDWAHPK-- 67 (379)
T ss_dssp CCCCE--EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE------------------EEEECCGG--
T ss_pred CcccE--EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE------------------EEEeCCCC--
Confidence 45788 555999999999999999999999998 5566677766655444 55554321
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~ 153 (579)
++.++++|+.||.|++||+.+++ .+..+ .+|...|.+++|+|+ ++++++++.|+.|++||+.++. ...
T Consensus 68 -----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 141 (379)
T 3jrp_A 68 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141 (379)
T ss_dssp -----GCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred -----CCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence 16789999999999999999987 44333 679999999999999 9999999999999999998873 344
Q ss_pred EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecC---C
Q 008041 154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---G 211 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--~~i~vwd~~~~~----~~~~~~~h~~~v~~l~~s~~---~ 211 (579)
.+..|...|.+++|+| +++++++++ +.|++||+++++ ....+.+|...|.+++|+|+ +
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 221 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 221 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence 5778899999999999 689999988 899999998764 45677899999999999999 8
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
++|++++ .|+.|++||+..+.............+...+..+.|+ |++.+|++++.||.|++|++....
T Consensus 222 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 222 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred CeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence 8999887 7999999999987533111222223355567778887 999999999999999999987543
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7e-31 Score=255.51 Aligned_cols=235 Identities=14% Similarity=0.166 Sum_probs=188.5
Q ss_pred CcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+.+|++|+.||.|++||+..+ +.+..+ .+|.++|++++|+| ++++|++|+.|++|++||+.+++ .+..+.+|.
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 99 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence 788999999999999999754 444444 78999999999986 48899999999999999998874 566778899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecC-------------CCEEEEEecC
Q 008041 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN-------------GKYVLSSAVG 220 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~-------------~~~l~s~~~~ 220 (579)
..|.+++|+|+ |.+|++++ +.|++||++++. ....+.+|...|.+++|+|+ +++|++++ .
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~ 178 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 178 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-T
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-C
Confidence 99999999997 88999988 899999998763 24567899999999999997 46888887 7
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC---CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
|++|++||++.++.. ......+..+...+..+.|+ |+ +.+|++++.||+|++||+++.... ....
T Consensus 179 D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~iWd~~~~~~~-----~~~~- 246 (297)
T 2pm7_B 179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCIIWTQDNEQGP-----WKKT- 246 (297)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSC-----CEEE-
T ss_pred CCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEEEEeCCCCCc-----ccee-
Confidence 999999999876522 11334555666777888888 87 489999999999999997653210 0000
Q ss_pred eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
. . ....|...+.+++|+|||++| ++++.|+++++|
T Consensus 247 ---------------~-~----------------------------~~~~~~~~v~~~~~s~~g~~l-as~~~D~~v~lw 281 (297)
T 2pm7_B 247 ---------------L-L----------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 281 (297)
T ss_dssp ---------------E-S----------------------------SSSCCSSCEEEEEECSSSCCE-EEEETTSCEEEE
T ss_pred ---------------e-e----------------------------ecccCCCcEEEEEECCCCCEE-EEEcCCCcEEEE
Confidence 0 0 001356689999999999999 999999999999
Q ss_pred ee
Q 008041 378 YV 379 (579)
Q Consensus 378 ~~ 379 (579)
+.
T Consensus 282 ~~ 283 (297)
T 2pm7_B 282 KE 283 (297)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-31 Score=265.28 Aligned_cols=243 Identities=11% Similarity=0.189 Sum_probs=203.2
Q ss_pred CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 4 ~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
++| .+++|+|+ |++|++|+.||.|+|||+.+++....+.+|...+..+.|++ .+
T Consensus 70 ~~v--~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~------------------~~-- 127 (366)
T 3k26_A 70 ENF--YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP------------------RD-- 127 (366)
T ss_dssp CCE--EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS------------------SC--
T ss_pred CcE--EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC------------------CC--
Confidence 557 56699999 67999999999999999999999988887766555555544 21
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
+.++++|+.||.|++||+.+++.+..+. .+|...|.+++|+|+++++++++.||.|++||+.+++....+..
T Consensus 128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 7889999999999999999998876652 57999999999999999999999999999999998765544443
Q ss_pred ----------------------------CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--------------eE
Q 008041 158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--------------MQ 193 (579)
Q Consensus 158 ----------------------------~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~--------------~~ 193 (579)
|...|.+++|+ ++++++++ +.|++||+.+++. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 88999999999 67899888 8999999987643 78
Q ss_pred EeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC--ceeEEeEEecCCcccCCCcEEEE
Q 008041 194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 194 ~~~~h~~~v~~l~~s~~--~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 269 (579)
.+.+|...|.+++|+|+ +++|++++ .|+.|++||+..++... .....+..+ ...+..+.|+ |++++|++
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s 352 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFS-----RDSSILIA 352 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence 88999999999999999 99999987 79999999999876442 122334444 5677888888 99999999
Q ss_pred EEcCCeEEEEEcCC
Q 008041 270 ISETGVCYIWYGQN 283 (579)
Q Consensus 270 ~~~dg~i~iwd~~~ 283 (579)
++.||.|++||+.+
T Consensus 353 ~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 353 VCDDASIWRWDRLR 366 (366)
T ss_dssp EETTSEEEEEEC--
T ss_pred EeCCCEEEEEEecC
Confidence 99999999999753
No 79
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=8.9e-31 Score=266.43 Aligned_cols=280 Identities=14% Similarity=0.181 Sum_probs=216.9
Q ss_pred EEEccCCCE-EEEEeCCCcEEEEECCCCeE----EEEeccCccccccccccccccccccccccceEEeeecccccccccC
Q 008041 11 TSFSPALDY-FAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 11 ~~fspdg~~-lasg~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
++++|+... +++++.||.|+||++..... ...+.+|.. .+.++.|.+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~------------------~V~~~~~~p~~-------- 93 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTA------------------PVLDIAWCPHN-------- 93 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSS------------------CEEEEEECTTC--------
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCC------------------CEEEEEeCCCC--------
Confidence 478887754 44578899999999865432 122333333 45566666532
Q ss_pred CcEEEEEECCCeEEEEEccCC-------eEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEe--
Q 008041 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~-- 155 (579)
+.++++|+.||.|++||+.++ +.+..+ .+|...|++++|+|++ +++++++.|+.|++||+.+++.+..+
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 778999999999999999987 334344 6899999999999998 68999999999999999999999998
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCC-EEEEEEecCCCEEEEEe--cCCCeEEEEEc
Q 008041 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT 229 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~-v~~l~~s~~~~~l~s~~--~~d~~i~vwd~ 229 (579)
..|...|.+++|+|+|++|++++ |.|++||+++++.+..+ .+|.+. +.++.|+|++++++++. ..|+.|++||+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 78999999999999999999998 89999999999999998 788876 89999999999888872 26999999999
Q ss_pred CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCcee-ecccCCeeEEeeeccCCcccc
Q 008041 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ 307 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (579)
+..+... ......+.. .+..+.|+ |++.+|+++ +.||.|++||+.+++. +..
T Consensus 253 ~~~~~~~--~~~~~~~~~-~v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------ 306 (402)
T 2aq5_A 253 KHLEEPL--SLQELDTSS-GVLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------ 306 (402)
T ss_dssp TBCSSCS--EEEECCCCS-SCEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred ccccCCc--eEEeccCCC-ceeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence 8876421 223333333 35566777 999998754 5799999999876542 100
Q ss_pred cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
+... .|...+.+++|+|||.++ +++ ++.+++|++.+
T Consensus 307 ----------------------------------l~~~-~~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~ 342 (402)
T 2aq5_A 307 ----------------------------------LSMF-SSKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE 342 (402)
T ss_dssp ----------------------------------EEEE-CCSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred ----------------------------------eccc-ccCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence 0011 145689999999999998 654 56899999853
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=8e-30 Score=255.37 Aligned_cols=280 Identities=13% Similarity=0.097 Sum_probs=216.6
Q ss_pred CCCcccceEEEEccC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeccCccccccccccccccccccccccceEEeeec
Q 008041 2 GSSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 2 ~~~~V~~l~~~fspd---g~~lasg~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
+.++| .+++|+|+ |++|++|+.||.|+|||+.+ +... ..+.+|...+.++.|+++
T Consensus 38 h~~~v--~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------------ 97 (368)
T 3mmy_A 38 PDDSI--GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD------------------ 97 (368)
T ss_dssp CSSCE--EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT------------------
T ss_pred CCCce--EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC------------------
Confidence 45778 55699999 69999999999999999987 5554 666666655554444443
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
+.+|++++.||.|++||+.+++.+.. .+|...|++++| +|++++|++++.||.|++||+++++.+..
T Consensus 98 ---------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 98 ---------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred ---------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 78899999999999999999987753 469999999999 89999999999999999999999999998
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCE----EEEEecCCCeEEE
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIAL 226 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~--~~h~~~v~~l~~s~~~~~----l~s~~~~d~~i~v 226 (579)
+..+. .+.++.+.++ .+++++ +.+++|+++........ ..+...+.++.+.++... +++++ .|+.|++
T Consensus 167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i 242 (368)
T 3mmy_A 167 LQLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI 242 (368)
T ss_dssp EECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred EecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence 88664 6677777654 444444 89999999876543322 234456677777766554 78877 7999999
Q ss_pred EEcCCCccccceeeeeeecCce------------eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCee
Q 008041 227 WRTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (579)
|+++...... ....+..+.. .+..+.|+ |++++|++++.||.|++||+.+++.+.
T Consensus 243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------ 309 (368)
T 3mmy_A 243 HYINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------ 309 (368)
T ss_dssp EESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE------
T ss_pred EecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE------
Confidence 9998874311 2233333332 47778887 999999999999999999987765432
Q ss_pred EEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008041 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (579)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (579)
.+.+|...+.+++|+|||.+| +++|.|+..
T Consensus 310 -------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~ 339 (368)
T 3mmy_A 310 -------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWS 339 (368)
T ss_dssp -------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCST
T ss_pred -------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEeccccc
Confidence 122567789999999999999 899888877
Q ss_pred cceee
Q 008041 375 RGRYV 379 (579)
Q Consensus 375 ~~w~~ 379 (579)
+.|++
T Consensus 340 ~~~~~ 344 (368)
T 3mmy_A 340 KGHEF 344 (368)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 77765
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=6.2e-30 Score=278.91 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=199.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++.+| .+++|+|+|++|++|+.||+|+|||+.++.....+.+|...+.++.|+++
T Consensus 429 h~~~v--~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~----------------------- 483 (694)
T 3dm0_A 429 HSHFV--EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD----------------------- 483 (694)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred CCCcE--EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC-----------------------
Confidence 35667 45599999999999999999999999999999999888777766666655
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
+.++++|+.|+.|++||.......... ..+|...|.+++|+|++ ..+++++.|++|++||+.+++....+.+
T Consensus 484 ----~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 484 ----NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp ----SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ----CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 778999999999999998765443222 25789999999999987 5799999999999999999999999999
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|.+.|++++|+|+|++|++++ |.|++||+++++.+..+. +...|.+++|+|++.++++++ |+.|++||+.++...
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV 636 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence 999999999999999999998 899999999999888776 456899999999998877654 678999999987533
Q ss_pred cceeeeeee-----------------cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 236 SASCVLAME-----------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 236 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
. ..... .....+..+.|+ |+|++|++|+.||+|++|++.
T Consensus 637 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 637 E---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp E---EECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred h---hhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence 1 01000 011124566777 999999999999999999975
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=4.4e-30 Score=258.02 Aligned_cols=248 Identities=12% Similarity=0.171 Sum_probs=200.4
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccCccccccccccccccccccccccceEEeeeccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
.++| .+++|+|++++|++|+.||.|++||+.+++....+ ..+.. .+.++.|.+.
T Consensus 52 ~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~---- 107 (372)
T 1k8k_C 52 NGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR------------------AARCVRWAPN---- 107 (372)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS------------------CEEEEEECTT----
T ss_pred CCcc--cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC------------------ceeEEEECCC----
Confidence 4677 55599999999999999999999999988765544 33333 3445555543
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-----------
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----------- 146 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~----------- 146 (579)
+.++++++.+|.|++||+..+. ....+..+|...|.+++|+|+++++++++.|+.|++||+
T Consensus 108 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 108 -----EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp -----SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred -----CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 7789999999999999999876 244555779999999999999999999999999999995
Q ss_pred -------CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041 147 -------LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 147 -------~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 217 (579)
..++.+..+..|...|.+++|+|+++++++++ +.|++||+++++.+..+..|..+|.+++|+|++++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 46788888989999999999999999999988 899999999999999999999999999999999877765
Q ss_pred ecCCCeEEEEEcCC--Cccc---------------------------cceee------eee--ecCceeEEeE-EecCCc
Q 008041 218 AVGERYIALWRTDG--VKKQ---------------------------SASCV------LAM--EHPAVFMDCR-CIDNGG 259 (579)
Q Consensus 218 ~~~d~~i~vwd~~~--~~~~---------------------------~~~~~------~~~--~~~~~~~~~~-~~~~~~ 259 (579)
.|+.|++|++.. ++.. ..... ..+ .|.. .+.++ +++
T Consensus 263 --~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~--- 336 (372)
T 1k8k_C 263 --HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLS--- 336 (372)
T ss_dssp --TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEE---
T ss_pred --eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEec---
Confidence 599999999987 3200 00000 111 3444 44455 455
Q ss_pred ccCCC---cEEEEEEcCCeEEEEEcCCceee
Q 008041 260 VDDAG---LYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 260 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
++| .+|++++.||.|++||+.+++.+
T Consensus 337 --~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 337 --GGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp --STTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred --CCCcceeeEEEecCCCceEEEEecChhHh
Confidence 777 99999999999999999887654
No 83
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-31 Score=287.87 Aligned_cols=252 Identities=16% Similarity=0.197 Sum_probs=205.0
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
+.++| .+++|+|+|++|++|+.||.|+|||+. ++.....+.+|...+. ++.|.+..
T Consensus 8 H~~~V--~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~------------------~l~~s~~~-- 65 (753)
T 3jro_A 8 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW------------------RVDWAHPK-- 65 (753)
T ss_dssp CCCCE--EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE------------------EEEECCTT--
T ss_pred Cccee--EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE------------------EEEecCCC--
Confidence 46788 555999999999999999999999998 5566777776665554 44444321
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG 153 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~ 153 (579)
++.++++|+.||.|++||+.+++ .+..+ .+|..+|++++|+|+ ++.+++|+.||.|++||+.++. ...
T Consensus 66 -----~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 66 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp -----SCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred -----CCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 16789999999999999999987 44333 679999999999999 9999999999999999998773 344
Q ss_pred EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCC----eeeEEeecCCCCEEEEEEecC---C
Q 008041 154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---G 211 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~s~~---~ 211 (579)
.+.+|...|.+++|+| +++++++|+ |.|++||++++ .....+.+|..+|.+++|+|+ +
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence 5778999999999999 588999887 89999999877 566788899999999999999 8
Q ss_pred CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
+++++++ .||.|++||+..+.............+...+..+.|+ |+|.+|++++.||.|++||+.++...
T Consensus 220 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 220 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp EEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred CEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 8999987 7999999999987532111222233345566777887 99999999999999999998865443
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=2.8e-29 Score=248.76 Aligned_cols=246 Identities=16% Similarity=0.190 Sum_probs=199.2
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+| .+++|+|+|++|++|+.|+.|++|+...+........+........+.+.
T Consensus 86 ~~~V--~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 139 (340)
T 4aow_A 86 SHFV--SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD------------------------ 139 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec------------------------
Confidence 4678 55599999999999999999999999998887766544433332222222
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..+++|+.|+.+++||............+|...|.+++|++++ .++++++.|+.|++||+.+++.+..+.+|.+
T Consensus 140 ---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 140 ---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp ---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 67799999999999999988877666668899999999999865 4688999999999999999999999999999
Q ss_pred CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc--
Q 008041 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-- 236 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~-- 236 (579)
.|++++|+|++++|++|+ +.|++||+++.+.+..+.. ...|.++.|+|++.+++ ++ .|+.|++||++......
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~-~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLC-AA-TGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEE-EE-ETTEEEEEETTTTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceee-cc-CCCEEEEEECCCCeEEEec
Confidence 999999999999999998 8999999999999988875 46899999999986654 45 59999999998765321
Q ss_pred --ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
.........+...+.++.|+ |+|++|++|+.||.|++||+.+|+
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 00111222345566778887 999999999999999999999885
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=2.8e-30 Score=262.02 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=203.8
Q ss_pred CCcccceEEEEccC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccCccccccccccccccccccccccce
Q 008041 3 SSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTC 70 (579)
Q Consensus 3 ~~~V~~l~~~fspd----g---~~lasg~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (579)
.++| .+++|+|+ | ++|++|+.||.|++||+.+++. ...+..+.... ....+.+
T Consensus 62 ~~~v--~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~ 126 (397)
T 1sq9_A 62 KSGL--HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFWA 126 (397)
T ss_dssp TTCE--EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEEE
T ss_pred CCcE--EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEEE
Confidence 4677 55699999 9 9999999999999999988775 66665442000 0234566
Q ss_pred EEeeecc-cccccccCCcE-EEEEECCCeEEEEEccC------CeEEE-----Eec------CCCCCCEEEEEEccCCCE
Q 008041 71 MKWLSVD-RKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFATHGSC 131 (579)
Q Consensus 71 ~~w~~~~-~~~~~~~~~~~-l~~~~~~g~i~iwd~~~------~~~~~-----~~~------~~h~~~V~~l~~~~~~~~ 131 (579)
+.|.+.. + ++.. +++++.+|.|++||+.+ ++.+. .+. ..|...|++++|+|++ +
T Consensus 127 ~~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 127 LKWGASNDR------LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp EEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred EEEeeccCC------CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 6776211 1 1677 99999999999999998 55443 332 4588999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCceeeEeec---C---CCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeec---
Q 008041 132 IYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSG--- 197 (579)
Q Consensus 132 l~s~~~d~~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~~--- 197 (579)
+++++.|+.|++||+++++.+..+.. | ...|.+++|+|++++|++++ +.|++||+++++.+..+.+
T Consensus 200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 99999999999999999999999998 8 89999999999999999987 4899999999999999998
Q ss_pred ----------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee------cC---------------
Q 008041 198 ----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------HP--------------- 246 (579)
Q Consensus 198 ----------h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~--------------- 246 (579)
|...|.+++|+|++++|++++ .|+.|++||+.+++.. ..+. .+
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee-----EEEecccCcccchhhhhcccccccccc
Confidence 999999999999999999988 7999999999887633 3343 33
Q ss_pred ceeEEeEEecCCcccCCC----------cEEEEEEcCCeEEEEEcCCce
Q 008041 247 AVFMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~ 285 (579)
...+..+.|+ |++ .+|++++.||.|++||+++++
T Consensus 354 ~~~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 354 EPGVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SCCEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CCceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5667778887 888 799999999999999988763
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.5e-30 Score=255.58 Aligned_cols=235 Identities=13% Similarity=0.100 Sum_probs=188.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~ 160 (579)
+.+|++|+.|+.|++||+.++.. ....+.+|.++|++++|+| ++++|++|+.|++|++||++++ +....+.+|..
T Consensus 25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~ 104 (316)
T 3bg1_A 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS 104 (316)
T ss_dssp GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence 78899999999999999998753 2233478999999999976 4889999999999999999887 45667888999
Q ss_pred CeeEEEEccC--CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecC-----------------CCEEEE
Q 008041 161 GISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN-----------------GKYVLS 216 (579)
Q Consensus 161 ~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~-----------------~~~l~s 216 (579)
.|.+++|+|+ |.+|++|+ +.|++||++++.. ...+.+|...|.++.|+|+ +++|++
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 9999999998 78999998 8999999987632 3456789999999999997 367888
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC----cEEEEEEcCCeEEEEEcCCceeecccCC
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
++ .|+.|++||++..... .....+..+...+..+.|+ |++ .+|++++.||+|++|++.+...-
T Consensus 185 gs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D~~v~iw~~~~~~~~----- 251 (316)
T 3bg1_A 185 GG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQDGRVFIWTCDDASSN----- 251 (316)
T ss_dssp CB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETTCEEEEEECSSTTCC-----
T ss_pred ec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCCCeEEEEEccCcccc-----
Confidence 77 7999999999754311 1334555666677888887 775 89999999999999997653110
Q ss_pred eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008041 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~ 372 (579)
... ...+..|...|.+++|+|||.+| ++++.|+
T Consensus 252 -------------~~~---------------------------------~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~ 284 (316)
T 3bg1_A 252 -------------TWS---------------------------------PKLLHKFNDVVWHVSWSITANIL-AVSGGDN 284 (316)
T ss_dssp -------------CCB---------------------------------CCEEEECSSCEEEEEECTTTCCE-EEEESSS
T ss_pred -------------chh---------------------------------hhhhhcCCCcEEEEEEcCCCCEE-EEEcCCC
Confidence 000 00123567789999999999999 9999999
Q ss_pred cccceeee
Q 008041 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
++++|+..
T Consensus 285 ~v~lw~~~ 292 (316)
T 3bg1_A 285 KVTLWKES 292 (316)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEC
Confidence 99999873
No 87
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2.1e-29 Score=261.30 Aligned_cols=243 Identities=15% Similarity=0.213 Sum_probs=204.6
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
++++| .+++|+|++ +|++|+.||+|++||+.+++....+.+|...+. ++.|.+..
T Consensus 161 h~~~V--~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~l~~~~~~---- 215 (464)
T 3v7d_B 161 HDGGV--WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR------------------CLDIVEYK---- 215 (464)
T ss_dssp CSSCE--EEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEEESS----
T ss_pred CCcCE--EEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccE------------------EEEEecCC----
Confidence 45788 556999988 999999999999999999999998887665554 44444321
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEE----------------------EEecCCCCCCEEEEEEccCCCEEEEEeCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADG 139 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~ 139 (579)
++.++++|+.||.|++||+.++... .....+|...|.++ +++++++++++.|+
T Consensus 216 ---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~ 290 (464)
T 3v7d_B 216 ---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN 290 (464)
T ss_dssp ---SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred ---CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence 1678999999999999999887532 23446799999887 56889999999999
Q ss_pred cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 217 (579)
.|++||+.+++.+..+.+|...|.+++|+|+++++++|+ |.|++||+++++.+.++.+|...|.++.|+ +++++++
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 999999999999999999999999999999999999998 899999999999999999999999999997 5789988
Q ss_pred ecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
+ .|+.|++||+.+.... .... +........++ +++.++++++ ||.|++||+.+++.+..
T Consensus 369 s-~dg~v~vwd~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 369 A-ADGSIRGWDANDYSRK-----FSYH-HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp E-TTSEEEEEETTTCCEE-----EEEE-CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred e-CCCcEEEEECCCCcee-----eeec-CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 7 7999999999986532 3332 33345556666 8999999988 89999999999988864
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=263.89 Aligned_cols=296 Identities=9% Similarity=-0.018 Sum_probs=219.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccc---------------cc-cccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL---------------ER-EHLSVD 67 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~ 67 (579)
.-| .+++|||||+++|+++.|++|+ |...++. +.+|...+..+.|+|+- .. +| ...
T Consensus 16 ~~v--~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~ 87 (588)
T 2j04_A 16 DWK--NNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCY 87 (588)
T ss_dssp SSS--CCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCC
T ss_pred ccE--EEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCc
Confidence 346 4559999999999999999999 7666543 47888888888777541 00 22 456
Q ss_pred cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCCCcEE
Q 008041 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVC 142 (579)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d~~v~ 142 (579)
+.+++|.|. +..|++++.+|.|++||..+ ++..+ . |.. .|.+++|+|||++|++|+.||+|+
T Consensus 88 V~~vawSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 88 PRVCKPSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp EEEEEECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred EEEEEECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 788888885 78899999999999999544 44443 4 554 599999999999999999999999
Q ss_pred EEeCCCCce-------eeEe----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee---eEEe-ecCCCCEEEEE
Q 008041 143 EIDPLTGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMT 206 (579)
Q Consensus 143 iwd~~~~~~-------~~~~----~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~---~~~~-~~h~~~v~~l~ 206 (579)
+||+.++.. +.++ .+|...|.+++|+||| +++++. +.|++||+.+++. ..++ .+|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 999998753 5666 5677899999999999 555555 8999999988773 3566 47889999999
Q ss_pred EecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe--cCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 207 ~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
|+ |+.+++++ ++.|++||+.+++.. ....+|. ..+..+.+ + |++..|+++++||+ ++|..+.
T Consensus 234 Fs--g~~LASa~--~~tIkLWd~~~~~~~----~~~~gh~-~~V~~va~~~s-----~d~~~La~a~edG~-klw~~d~- 297 (588)
T 2j04_A 234 IV--DYKVVLTC--PGYVHKIDLKNYSIS----SLKTGSL-ENFHIIPLNHE-----KESTILLMSNKTSY-KVLLEDE- 297 (588)
T ss_dssp EE--TTEEEEEC--SSEEEEEETTTTEEE----EEECSCC-SCCCEEEETTC-----SSCEEEEECSSCEE-EEEESSS-
T ss_pred EE--CCEEEEEe--CCeEEEEECCCCeEE----EEEcCCC-ceEEEEEeeeC-----CCCCEEEEEcCCCC-EEEeecc-
Confidence 99 68888875 699999999987642 2343444 44455677 6 99999999999999 9999772
Q ss_pred eeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCccee
Q 008041 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (579)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (579)
.. +++++. .+++. ++.++.++. .|.. +..+.+ ...|.+++|||||+.+
T Consensus 298 ----------~~------~spd~~----l~a~~--d~~v~lW~~-----~g~~----l~~~~~-~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 298 ----------LH------VTADNI----IAPYL--EKKFKKWST-----IWNE----FNNYET-TLVIHGISLSPDGYSI 345 (588)
T ss_dssp ----------EE------EECCCS----SHHHH--HHHHHHTTT-----TTTS----SSSSCC-EEEEEEEEECTTSSEE
T ss_pred ----------EE------ECCCce----EEEEc--CCEEEEEEC-----CCCc----eeeecc-ceEEEEEEECCCCCEE
Confidence 11 344543 33333 666665431 1111 212222 4468999999999999
Q ss_pred eccccc
Q 008041 365 PMSQSL 370 (579)
Q Consensus 365 ~~s~s~ 370 (579)
++++.
T Consensus 346 -A~~~~ 350 (588)
T 2j04_A 346 -AIVYD 350 (588)
T ss_dssp -EEEEE
T ss_pred -EEEEe
Confidence 76663
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-31 Score=271.54 Aligned_cols=296 Identities=12% Similarity=0.103 Sum_probs=221.1
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCccccccccccc-cccccccccccceEEeeecccccccccCCcEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGN-RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|+|+++.+++++ .|+ .+++.+..+ .+|...+.++.|++ + +.++
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~---------------------------~~~l 79 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE---------------------------TPYL 79 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS---------------------------SCEE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC---------------------------CCEE
Confidence 5889998888765 388 467888887 66666555555554 3 7889
Q ss_pred EEEECCCeEEEEEccC---CeEEE-EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEeec-----
Q 008041 90 VLGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA----- 157 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~---~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~----- 157 (579)
++|+.||.|++||+.+ +.... ....+|..+|++++|+|++++|++++.||.|++||+. +++....+..
T Consensus 80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp EEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 9999999999999987 43211 1112599999999999999999999999999999994 5555444332
Q ss_pred -------CCCCeeEEE--EccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 158 -------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 158 -------~~~~v~~l~--~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
+...+.++. ++|+++++++++ +.|++||+++++.+..+.+ |...|++++|+|++++|++++ .|+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i 238 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGII 238 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeE
Confidence 344666666 567899999998 8999999999999999988 899999999999999999988 79999
Q ss_pred EEEEcCCCccccceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCC
Q 008041 225 ALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (579)
++||++.++.. ..+. .+...+..+.+.+ .++|++.+|++++.||.|++||+.+++.+.........+.... +
T Consensus 239 ~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~ 311 (437)
T 3gre_A 239 DIWDIRFNVLI-----RSWSFGDHAPITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-F 311 (437)
T ss_dssp EEEETTTTEEE-----EEEBCTTCEEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG-G
T ss_pred EEEEcCCccEE-----EEEecCCCCceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce-e
Confidence 99999986532 3332 3334566665542 1237888999999999999999999887665543322222111 2
Q ss_pred cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec--CCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
+++++ .+... .+.+ |...|.+++|+ ++.+| ++|+.|+.+++|++.+
T Consensus 312 ~~~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 312 LPIEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNE 359 (437)
T ss_dssp SCBCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTC
T ss_pred ccccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCC
Confidence 33322 11000 1224 88899999999 88899 9999999999999853
No 90
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.4e-30 Score=253.24 Aligned_cols=285 Identities=13% Similarity=0.053 Sum_probs=203.5
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCc
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGM 140 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~ 140 (579)
.++++.|.+. +.+|++|+.||.|++||+.++. .... +.+|..+|++++|+| ++++|++++.||.
T Consensus 13 ~v~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 13 LVHDVVYDFY---------GRHVATCSSDQHIKVFKLDKDTSNWELSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CEEEEEECSS---------SSEEEEEETTSEEEEEEECSSSCCEEEEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ceeEEEEcCC---------CCEEEEeeCCCeEEEEECCCCCCcceecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 4566666653 7789999999999999999763 3333 368999999999999 6999999999999
Q ss_pred EEEEeCCCC---------ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEee-----------
Q 008041 141 VCEIDPLTG---------SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS----------- 196 (579)
Q Consensus 141 v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~~~~~~~----------- 196 (579)
|++||+.++ +.+..+..|...|.+++|+|+ ++++++++ |.|++||+++++.+..+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999999877 557788899999999999999 99999987 899999999886544332
Q ss_pred --cCCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC----cEE
Q 008041 197 --GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYV 267 (579)
Q Consensus 197 --~h~~~v~~l~~s~~---~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l 267 (579)
+|...+.++.|+|+ +.++++++ .|+.+.+|+...++.. ....+..+...+.++.|+ |++ .+|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~~~~~l 233 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGRWYQLI 233 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSCSSEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCCcceEE
Confidence 67889999999997 88998887 6999988877766532 345555666677888888 888 899
Q ss_pred EEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec
Q 008041 268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347 (579)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (579)
++++.||.|++||+.++................. ...... ....+..++. .......+..........+.+
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD-NSADVD----MDAQGRSDSN----TEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp EEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEEEEECT
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccC-CCcccc----cccccccccc----cceeeeecccccccEEEEEec
Confidence 9999999999999887644332221111111000 011111 1111111110 000111111222244556778
Q ss_pred CCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 348 h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus 305 h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 305 HNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKAT 336 (351)
T ss_dssp TSSCEEEEEECSSSCCE-EEEETTSCEEEEEEC
T ss_pred ccccEEEEEEcCCCCEE-EEecCCCcEEEEecC
Confidence 99999999999999999 999999999999985
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.1e-31 Score=272.85 Aligned_cols=254 Identities=8% Similarity=0.082 Sum_probs=190.3
Q ss_pred CCcccceEEEEccC------CCEEEEEeCCCcEEEEECCCCeEEE--EeccCccccccccccccccccccccccceEEee
Q 008041 3 SSNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 3 ~~~V~~l~~~fspd------g~~lasg~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
.++| ..++|+|+ +.+||+|+.||+|+|||+.++.... .+. ...+. .. ..+| ...++++.|.
T Consensus 207 ~~~V--~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~p~--~~-----l~~h-~~~v~sv~~s 275 (524)
T 2j04_B 207 FGEV--WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEKPS--LT-----LSLA-DSLITTFDFL 275 (524)
T ss_dssp CCSE--EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCSCS--EE-----ECCT-TTCEEEEEES
T ss_pred CCcE--EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecCce--EE-----EEcC-CCCEEEEEec
Confidence 3567 44599997 5799999999999999998764210 000 00000 00 1123 2456788886
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEE--EEccCC-CEEEEEeCCCcEEEEeCCCCce
Q 008041 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVCEIDPLTGSL 151 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~~~d~~v~iwd~~~~~~ 151 (579)
+ +..|++|+.||.|++||+.++........+|...|+++ .|+|+| ++|++|+.|++|++||++++++
T Consensus 276 ~----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 276 S----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp S----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred C----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 4 34699999999999999998754334447899999999 578887 8899999999999999999888
Q ss_pred eeEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008041 152 LGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (579)
Q Consensus 152 ~~~~~~~~~--~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vw 227 (579)
..++.+|.. .|.+++|+|+++.+++++ ++|++||++++.++.++.+|.+.|++++|+|+|++|++++ .|++|++|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lw 424 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIIT 424 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECC
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEE
Confidence 777777654 588999999999999887 7999999999998889999999999999999999999988 79999999
Q ss_pred EcCCCcccc---------------------------------------ceeeeeeecCceeEEeEEecCCcccCCC---c
Q 008041 228 RTDGVKKQS---------------------------------------ASCVLAMEHPAVFMDCRCIDNGGVDDAG---L 265 (579)
Q Consensus 228 d~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 265 (579)
|+....... ..+...+..+...+.++.|+ |++ .
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs-----p~~~~~~ 499 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN-----ETSAGGK 499 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC-----CSTTTTT
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC-----CCCCccH
Confidence 975431110 00011111223344556776 875 5
Q ss_pred EEEEEEcCCeEEEEEcCC
Q 008041 266 YVLAISETGVCYIWYGQN 283 (579)
Q Consensus 266 ~l~~~~~dg~i~iwd~~~ 283 (579)
.+++|+.||.|+||+++-
T Consensus 500 ~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 500 CYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEEECTTSEEEEEECSC
T ss_pred HHHhhccCceEEEEEccc
Confidence 999999999999999753
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=256.43 Aligned_cols=250 Identities=11% Similarity=0.143 Sum_probs=198.5
Q ss_pred CCcccceEEEEccC---CCEEEEEeCCCcEEEEECCCCe-EEEEeccCccccccccccccccccccccccceEEeee---
Q 008041 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS--- 75 (579)
Q Consensus 3 ~~~V~~l~~~fspd---g~~lasg~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~--- 75 (579)
.++| .+++|+|+ |++|++|+.||.|++||+.+++ ....+.+|...+.. +.|.+
T Consensus 65 ~~~v--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~~~~~~ 124 (357)
T 3i2n_A 65 AKPI--KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINA------------------IDGIGGLG 124 (357)
T ss_dssp SSCE--EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEE------------------EEEESGGG
T ss_pred cCcE--EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEE------------------Eeeccccc
Confidence 4577 56699999 7999999999999999999887 77777766655544 43332
Q ss_pred cccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCC----CCEEEEE----EccCCCEEEEEeCCCcEEEEeC
Q 008041 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~----~~V~~l~----~~~~~~~l~s~~~d~~v~iwd~ 146 (579)
.+++ +.++++++.+|.|++||+.+++ .+..+ ..|. ..|.++. |+|+++++++++.|+.|++||+
T Consensus 125 ~s~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 125 IGEG------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp CC-C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred cCCC------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 1111 7789999999999999999887 44343 3343 3899998 7889999999999999999999
Q ss_pred CCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCCCeeeEEee-----cCCCCEEEEEEecCCC-EEE
Q 008041 147 LTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVL 215 (579)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--~~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~s~~~~-~l~ 215 (579)
++++.... ..|...|.+++|+| +++++++++ |.|++||+++++.+..+. +|...|.+++|+|+++ +++
T Consensus 198 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 198 RNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp TTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 98887544 56788999999999 899999988 899999999877665554 8999999999999998 677
Q ss_pred EEecCCCeEEEEEcCCCcccc--------------ceeeeeeecCceeEEeEEecCCcccCCCcEEE-EEEcCCeEEEEE
Q 008041 216 SSAVGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWY 280 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd 280 (579)
+++ .|+.|++||++...... ...+..+..+...+..+.|+ |++++|+ +++.||.|++||
T Consensus 277 ~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 277 TAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred EEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEE
Confidence 776 79999999998654321 12455566667778888888 9999998 799999999999
Q ss_pred cCCcee
Q 008041 281 GQNIEE 286 (579)
Q Consensus 281 ~~~~~~ 286 (579)
+.+.+.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987654
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-29 Score=259.32 Aligned_cols=256 Identities=13% Similarity=0.053 Sum_probs=196.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccc----------c------------
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGN----------R------------ 58 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~----------~------------ 58 (579)
.|++++ +|+|||++|++++ ++.|++||+.+|+ .+..+..+........+.. .
T Consensus 5 ~p~~~v--~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNL--LTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEE--EECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEE--EecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 577444 9999999777665 7899999999998 6666654432100000000 0
Q ss_pred ----------cccc----ccccccceEEeeecccccccccCCcE-EEEEECCCeEEEEEcc--CCeEEEEec-CCCCCCE
Q 008041 59 ----------LERE----HLSVDYTCMKWLSVDRKKKRKLGSSL-LVLGTGGGDVLALAVS--AGQLKWRLS-DCHPGGV 120 (579)
Q Consensus 59 ----------~~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~-l~~~~~~g~i~iwd~~--~~~~~~~~~-~~h~~~V 120 (579)
...+ .....+.++.|.+. +.+ +++|+.||.|++||+. +++.+..+. ..|...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp ------------------CCCCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 0000 01225778888775 555 4888899999999999 777765543 2577899
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCceee----EeecCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee
Q 008041 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK 191 (579)
Q Consensus 121 ~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~---g~~l~~~~--~~i~vwd~~~~~~ 191 (579)
++++|+|++++|++++.||.|++|++.+++... .+.+|...|++++|+|+ +++|++++ +.|++||+++++.
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 999999999999999999999999998887554 78889999999999999 99999998 8999999999988
Q ss_pred eEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-----------------------cCc
Q 008041 192 MQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HPA 247 (579)
Q Consensus 192 ~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~ 247 (579)
+.. +.+|...|.+++|+ ++++|++++ .|+.|++||+.+++.. ..+... ...
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccce
Confidence 877 56899999999999 999999988 7999999999987643 111111 112
Q ss_pred eeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEc
Q 008041 248 VFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG 281 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~ 281 (579)
..+..+.+. |++++|++++ .|+.|++|++
T Consensus 308 ~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 308 FAVSKIIKS-----KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence 345566776 8999999999 8999999997
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=250.79 Aligned_cols=234 Identities=14% Similarity=0.079 Sum_probs=183.8
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
..+.+++.+|++|+.||+|++||+.+++.+..+. ...+..+.+++ . ++
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~----------------------------~--~~ 89 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP----------------------------A--II 89 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC----------------------------S--EE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC----------------------------c--eE
Confidence 3456788999999999999999999998887765 22222222222 2 78
Q ss_pred EEECCCeEEEEEcc---------CCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeec-C
Q 008041 91 LGTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-S 158 (579)
Q Consensus 91 ~~~~~g~i~iwd~~---------~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~ 158 (579)
+++.|+.|++|+.. +++.+.....+|.++|.+++|+| +++++++++.||+|++||+.+++....+.. +
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~ 169 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS 169 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence 88888888888655 56655555567889999999999 999999999999999999999998776644 4
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-EEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~-~~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
...+.+++|+|+|.++++|+ |.|++||+++++.+ ..+.+ |.++|++++|+|++.+|++++ |+.|++||+++.+.
T Consensus 170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVG 247 (343)
T ss_dssp SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCc
Confidence 55899999999999999988 99999999999887 78888 999999999999999999987 44999999998764
Q ss_pred ccceeeeeeecCceeE--EeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCce
Q 008041 235 QSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 285 (579)
.. .+..+..+...+ .++.|+ |+|++|++++. |+.+++|++....
T Consensus 248 ~~--~~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 248 TL--AYPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp CB--SSCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ce--eecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEcccc
Confidence 31 111111111222 357777 99999999998 9999999986654
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=253.61 Aligned_cols=236 Identities=14% Similarity=0.161 Sum_probs=194.6
Q ss_pred CcEEEEEECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041 86 SSLLVLGTGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+.+|++|+.||.|++||+. +++.+..+ .+|..+|++++|+|+ +++|++++.||.|++||+.+++ .+..+..|.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 101 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence 7889999999999999998 44444444 689999999999977 8999999999999999999887 777788899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008041 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG 220 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~-------------~~~~l~s~~~~ 220 (579)
..|.+++|+|+ ++++++++ +.|++||++++. ....+.+|...|.+++|+| ++.++++++ .
T Consensus 102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 180 (379)
T 3jrp_A 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 180 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-T
T ss_pred cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-C
Confidence 99999999999 99999988 899999999873 3456778999999999999 689999987 7
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC---CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
|+.|++||++..... ......+..+...+.++.|+ |+ +.+|++++.||.|++||+.++.... ....
T Consensus 181 dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~ 249 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPW-----KKTL 249 (379)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEEE
T ss_pred CCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEEC-----CCCCCCCeEEEEeCCCEEEEEeCCCCCccc-----eeee
Confidence 999999999876533 22344555666677888888 88 8999999999999999987653110 0000
Q ss_pred eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
. ....|...+.+++|+|||.+| ++++.|+.+++|
T Consensus 250 ~---------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw 283 (379)
T 3jrp_A 250 L---------------------------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 283 (379)
T ss_dssp S---------------------------------------------SSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEE
T ss_pred e---------------------------------------------ccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEE
Confidence 0 011366689999999999999 899899999999
Q ss_pred eee
Q 008041 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
++.
T Consensus 284 ~~~ 286 (379)
T 3jrp_A 284 KEN 286 (379)
T ss_dssp EEE
T ss_pred eCC
Confidence 986
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.1e-28 Score=252.56 Aligned_cols=242 Identities=16% Similarity=0.263 Sum_probs=202.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .+++|+|||++||+|+.||+|+|||+.+++++..+.+|...+ .++.|.
T Consensus 148 ~~V--~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v------------------~~~s~~--------- 198 (420)
T 4gga_A 148 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV------------------GSLSWN--------- 198 (420)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------------EEEEEE---------
T ss_pred CcE--EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce------------------EEEeeC---------
Confidence 457 556999999999999999999999999999999887665433 344442
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST 159 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~ 159 (579)
+.++++|+.++.+++||..........+.+|...+..+.|+|+++++++++.|+.+++||..+++ .+..+..|.
T Consensus 199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred --CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 56799999999999999988765545557899999999999999999999999999999998765 345677788
Q ss_pred CCeeEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008041 160 KGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (579)
Q Consensus 160 ~~v~~l~~~p~g~-~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~~d~~i~vwd~~~~~ 233 (579)
..|.+++|+|++. ++++++ +.|++||+.+++++..+..| ..+.++.|+|+++.+++++ ..|+.|++||+.+++
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999999665 455442 79999999999999888755 5788999999999888764 368999999999876
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
++..+..|...+.+++|+ |+|.+|++|+.||+|++||+......
T Consensus 356 -----~v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 356 -----KVAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp -----EEEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred -----EEEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCcc
Confidence 345666666778888888 99999999999999999998766544
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-29 Score=247.59 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=204.9
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+|++++|++++.||.|++||+.+++....+. +...+ .++.|.+.
T Consensus 73 h~~~v--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v------------------~~~~~~~~----- 126 (369)
T 3zwl_B 73 HTGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPV------------------KRVEFSPC----- 126 (369)
T ss_dssp CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCE------------------EEEEECTT-----
T ss_pred cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCe------------------EEEEEccC-----
Confidence 35677 556999999999999999999999999999888776 33333 44555442
Q ss_pred cccCCcEEEEEECC-----CeEEEEEccCCeE-----------EEEecCCCCC--CEEEEEEccCCCEEEEEeCCCcEEE
Q 008041 82 RKLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 82 ~~~~~~~l~~~~~~-----g~i~iwd~~~~~~-----------~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~d~~v~i 143 (579)
+..+++++.+ |.|++||+..+.. ...+ ..|.. .+.+++|+|+++++++++.||.|++
T Consensus 127 ----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 127 ----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ----CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 7789999998 9999999987532 1111 34555 8999999999999999999999999
Q ss_pred EeCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
||+.+ ++.+..+..|...|.+++|+|++++|++++ +.|++||+++++.+..+. +...+..+.|+|+++++++++ .
T Consensus 202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~ 279 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-G 279 (369)
T ss_dssp EETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-C
T ss_pred EECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-c
Confidence 99998 788888999999999999999999999987 899999999999988887 788999999999999999988 5
Q ss_pred CC--------------eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 221 ER--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 221 d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
++ .+++||..+++.. ..+..+...+..+.|+ |++++|++++.||.|++|+++++..
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CC-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHH
T ss_pred CCCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccc
Confidence 66 8999999887633 4555566677888888 9999999999999999999987654
Q ss_pred e
Q 008041 287 L 287 (579)
Q Consensus 287 ~ 287 (579)
.
T Consensus 350 ~ 350 (369)
T 3zwl_B 350 D 350 (369)
T ss_dssp T
T ss_pred h
Confidence 3
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.5e-30 Score=259.48 Aligned_cols=197 Identities=10% Similarity=0.128 Sum_probs=154.4
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+.++| .+++|+|+|++|++|+.||+|+|||+.++. ....+.+|...+.++.|+++
T Consensus 54 h~~~v--~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------- 111 (377)
T 3dwl_C 54 HDKIV--TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN-------------------- 111 (377)
T ss_dssp CSSCE--EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT--------------------
T ss_pred CCceE--EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC--------------------
Confidence 35678 556999999999999999999999999877 55555555555544444443
Q ss_pred ccccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--------
Q 008041 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------- 147 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-------- 147 (579)
+.++++++.+|.|++||+.+++. ...+...|...|++++|+|++++|++++.|+.|++||+.
T Consensus 112 -------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 112 -------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp -------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred -------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 67899999999999999998873 445543499999999999999999999999999999985
Q ss_pred ----------CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCC
Q 008041 148 ----------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNG 211 (579)
Q Consensus 148 ----------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~----~~~~~~h~~~v~~l~~s~~~ 211 (579)
.++++..+ +|...|.+++|+|+|++|++++ |.|++||+++++. +..+.+|..+|.+++|+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 34566667 8999999999999999999988 8999999999887 78889999999999999999
Q ss_pred CEEEEEecCCCeEEEEEcC
Q 008041 212 KYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~~ 230 (579)
++|++++ .|+ +.+|+..
T Consensus 264 ~~l~~~~-~~~-~~~~~~~ 280 (377)
T 3dwl_C 264 AIVAAGY-NYS-PILLQGN 280 (377)
T ss_dssp EEEEEES-SSS-EEEECCC
T ss_pred CEEEEEc-CCc-EEEEEeC
Confidence 9888775 455 5577765
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4e-29 Score=256.42 Aligned_cols=248 Identities=13% Similarity=0.197 Sum_probs=197.2
Q ss_pred CCcccceEEEEccC-CCEEEEEeCCCcEEEEECCC----------CeEEEEeccCccccccccccccccccccccccceE
Q 008041 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (579)
Q Consensus 3 ~~~V~~l~~~fspd-g~~lasg~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (579)
.++|+ +++|+|+ +.+||+|+.||.|+|||+.+ ......+.+|.. .+.++
T Consensus 128 ~~~v~--~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l 187 (430)
T 2xyi_A 128 EGEVN--RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------------EGYGL 187 (430)
T ss_dssp SSCCS--EEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS------------------CCCCE
T ss_pred CCcEE--EEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC------------------CeEEE
Confidence 46784 4599997 68999999999999999976 344455544443 34566
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCCeE----E--EEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 008041 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----K--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEI 144 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~----~--~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iw 144 (579)
.|.+.. ..+|++|+.+|.|++||+.++.. + .....+|...|.+++|+| ++..|++++.||.|++|
T Consensus 188 ~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 188 SWNPNL--------NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp EECTTS--------TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EeCCCC--------CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 665542 33899999999999999987322 1 123357999999999999 67889999999999999
Q ss_pred eCCCC---ceeeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCC-EEEE
Q 008041 145 DPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YVLS 216 (579)
Q Consensus 145 d~~~~---~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~-~l~s 216 (579)
|++++ +.+..+..|...|++++|+|+++ ++++|+ |.|++||+++ ++.+..+.+|...|.++.|+|+++ +|++
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 99987 57778889999999999999997 577776 8999999998 567889999999999999999996 5666
Q ss_pred EecCCCeEEEEEcCCCcccc---------ceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEEEEcCCc
Q 008041 217 SAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 284 (579)
++ .|+.|++||+....... ...+.....+...+..+.|+ |++. +|++++.||.|++|++...
T Consensus 340 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred Ee-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence 66 79999999998732110 12445555556667788887 8988 8999999999999998654
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=4.5e-29 Score=252.05 Aligned_cols=238 Identities=15% Similarity=0.183 Sum_probs=187.5
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| ++++|++|+.||.|++||+.+ .....+..+. + ....+.++.|.+.
T Consensus 117 h~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--------------~-~~~~v~~~~~~~~---- 174 (383)
T 3ei3_B 117 PGDAI--TGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--------------S-WDYWYCCVDVSVS---- 174 (383)
T ss_dssp TTCBE--EEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--------------C-SSCCEEEEEEETT----
T ss_pred cCCce--eEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--------------C-CCCCeEEEEECCC----
Confidence 34677 5569999 789999999999999999985 4444444222 0 1234566677653
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC----CceeeEe
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKF 155 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~----~~~~~~~ 155 (579)
+.++++|+.+|.|++||+ +++.+..+ .+|...|.+++|+|+++ ++++++.|+.|++||+++ +..+..+
T Consensus 175 -----~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 175 -----RQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp -----TTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred -----CCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 778999999999999999 45555455 57999999999999999 899999999999999987 5666666
Q ss_pred ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----------------CCEEEEEEecCCCEEE
Q 008041 156 RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVL 215 (579)
Q Consensus 156 ~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~l~~s~~~~~l~ 215 (579)
+|...|.+++|+| ++++|++++ +.|++||+++++.+..+.+|. ..+..+.|+|++++
T Consensus 248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-- 324 (383)
T 3ei3_B 248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-- 324 (383)
T ss_dssp -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence 6899999999999 999999988 899999999988877776553 23444666666665
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+++ .|+.|++||+.+++.. ..+. ++...+.++.|+ |++.+|++++ ||.|++||+++
T Consensus 325 s~s-~d~~i~iwd~~~~~~~-----~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLN-DKRTIDIYDANSGGLV-----HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTT-CCCCEEEEETTTCCEE-----EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred ccC-CCCeEEEEecCCCcee-----eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence 444 7999999999987643 3333 245667777887 9999999997 99999999864
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.6e-28 Score=242.54 Aligned_cols=292 Identities=10% Similarity=-0.009 Sum_probs=206.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|||||++||+|+.|| ++|||+.+++.......+ ...++.|.+..
T Consensus 18 h~~~V--~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~---- 70 (355)
T 3vu4_A 18 VSNPV--TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT---- 70 (355)
T ss_dssp -CCCC--CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS----
T ss_pred CCCce--EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC----
Confidence 34678 5559999999999998775 789999888766543211 12233343321
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~ 160 (579)
+.++++++.++.|++||..+++.+..+. |..+|.++.|+++. ++++ .|+.|++||+.++ +.+..+..
T Consensus 71 ----~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--- 138 (355)
T 3vu4_A 71 ----NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--- 138 (355)
T ss_dssp ----SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---
T ss_pred ----CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---
Confidence 3344667788999999999999887663 67799999998764 4444 4889999999988 77777665
Q ss_pred CeeEEEEccCCCEEEEE--C--CeEEEEECCCCe----------------eeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008041 161 GISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~--~--~~i~vwd~~~~~----------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
+...++++| .+++++ + |.|++||+++++ .+..+.+|.++|.+++|+|+|++|++++ .
T Consensus 139 ~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~ 215 (355)
T 3vu4_A 139 FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-Q 215 (355)
T ss_dssp EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-C
Confidence 445566777 566664 3 899999999875 2678899999999999999999999998 7
Q ss_pred CCe-EEEEEcCCCccccceeeeeee-c-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc--cCCeeE
Q 008041 221 ERY-IALWRTDGVKKQSASCVLAME-H-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKI 295 (579)
Q Consensus 221 d~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~ 295 (579)
|++ |++||+++++.. ..+. . +...+.++.|+ |++++|++++.||+|++||+........ ....
T Consensus 216 d~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~-- 283 (355)
T 3vu4_A 216 DGTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW-- 283 (355)
T ss_dssp TCSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--
T ss_pred CCCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCcccccccce--
Confidence 998 999999987633 4454 2 55677788888 9999999999999999999876532111 0000
Q ss_pred EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (579)
+....++. .. . ...+.-...+......++|++||.++ ++++.|+.++
T Consensus 284 ------------------~~~~~~~~-~~--~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~ 330 (355)
T 3vu4_A 284 ------------------INMKYFQS-EW--S-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIE 330 (355)
T ss_dssp ------------------EECCCCCC-SS--C-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEE
T ss_pred ------------------eecccccc-cc--c-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEE
Confidence 00000000 00 0 00000000122234678999999999 8888899999
Q ss_pred ceeee
Q 008041 376 GRYVQ 380 (579)
Q Consensus 376 ~w~~~ 380 (579)
+|++.
T Consensus 331 ~~~~~ 335 (355)
T 3vu4_A 331 TFKVV 335 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-28 Score=237.24 Aligned_cols=236 Identities=13% Similarity=0.208 Sum_probs=193.9
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccCccccccccccccccccccccccceEEeeecccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 79 (579)
.++| .+++|+|++++|++|+.||.|++|++... +....+.+|.. .+.++.|.
T Consensus 59 ~~~v--~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------------~i~~~~~~----- 113 (313)
T 3odt_A 59 QGFL--NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------------NVCSLSFQ----- 113 (313)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------------CEEEEEEE-----
T ss_pred CccE--EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------------CEEEEEec-----
Confidence 4667 55599999999999999999999998754 34444443333 34455551
Q ss_pred cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-
Q 008041 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (579)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~- 157 (579)
+..+++++.+|.|++|| .++....+ ..|..+|.++.|+| +++++++++.|+.|++|| .++....+..
T Consensus 114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 66899999999999999 55555444 57999999999998 999999999999999999 5667777777
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|...+.+++|+|++. +++++ |.|++||+++++.+..+.+|...|.+++|+|++ .+++++ .|+.|++||+.+++..
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK 259 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence 888999999999999 55555 899999999999999999999999999999999 577777 7999999999987633
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
..+..+...+..+.|+ |+++ +++++.||.|++||+++++...
T Consensus 260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 4455566667788887 8888 6679999999999998876654
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.5e-29 Score=252.18 Aligned_cols=247 Identities=14% Similarity=0.207 Sum_probs=198.6
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccCccccccccccccccccccccccceEEe
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
+.++| .+++|+| ++++||+|+.||+|+|||+.++ +....+.+|...+ .++.|
T Consensus 80 h~~~V--~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~ 139 (402)
T 2aq5_A 80 HTAPV--LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV------------------GIVAW 139 (402)
T ss_dssp CSSCE--EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE------------------EEEEE
T ss_pred CCCCE--EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE------------------EEEEE
Confidence 35678 5569999 9999999999999999999987 4455555555444 45555
Q ss_pred eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008041 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 152 (579)
.+.. ..++++++.||.|++||+.+++.+..+. .+|...|++++|+|++++|++++.|+.|++||+++++.+
T Consensus 140 ~p~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 140 HPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp CSSB--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred CcCC--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence 5432 3689999999999999999999887764 679999999999999999999999999999999999999
Q ss_pred eEe-ecCCCC-eeEEEEccCCCEEEEE---C--CeEEEEECCCCee-eEEee-cCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041 153 GKF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 153 ~~~-~~~~~~-v~~l~~~p~g~~l~~~---~--~~i~vwd~~~~~~-~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~ 223 (579)
..+ ..|.+. +.++.|+|+++++++| + +.|++||+++++. +.... .|...+.++.|+|+++++++++..|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 988 678775 8999999999999998 4 8999999998764 33332 577889999999999999876657999
Q ss_pred EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
|++|++.+++.. ...+.... +...+..+.|+ |++.++++ .++.+++|++.+++
T Consensus 292 i~i~d~~~~~~~-~~~l~~~~-~~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 292 IRYFEITSEAPF-LHYLSMFS-SKESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEEECSSTTC-EEEEEEEC-CSSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEEecCCCcc-eEeecccc-cCCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence 999999987631 01222222 34556677787 89888764 57799999988754
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.6e-28 Score=249.86 Aligned_cols=262 Identities=16% Similarity=0.252 Sum_probs=211.1
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++|+ ++++++|+.||+|++||+.+++....+.+|...+. ++.|.
T Consensus 158 h~~~v--~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~------- 208 (445)
T 2ovr_B 158 HTGGV--WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR------------------CMHLH------- 208 (445)
T ss_dssp CSSCE--EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE-------
T ss_pred CCCCE--EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE------------------EEEec-------
Confidence 34677 555886 67999999999999999999999988876655443 44442
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
+..+++|+.||.|++||+.+++.+..+ .+|...|.++.| +++++++++.||.|++||+.+++.+..+.+|...
T Consensus 209 ----~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 209 ----EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281 (445)
T ss_dssp ----TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred ----CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence 556999999999999999999988666 679999999999 7889999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
|.+++| +++++++++ |.|++||+++++.+..+.+|...+.++.++ ++++++++ .|+.|++||+++++..
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~---- 352 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL---- 352 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE----
Confidence 999999 788899887 899999999999999999999999988875 56888887 7999999999887633
Q ss_pred eeeeec---CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc-----CCeeEEeeeccCCcccccccc
Q 008041 240 VLAMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-----KATKILSSSEDVNSKSQKSAT 311 (579)
Q Consensus 240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 311 (579)
..+.. +...+.++.+ ++.+|++++.||.|++||+.+++.+... .+....+.+.. +++++.
T Consensus 353 -~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~--- 420 (445)
T 2ovr_B 353 -QTLQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL--- 420 (445)
T ss_dssp -EEECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE---
T ss_pred -EEEccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEE---
Confidence 33332 4445556665 4589999999999999999999877654 12222222222 455555
Q ss_pred hhhhhccccc
Q 008041 312 AAIFAAKLQD 321 (579)
Q Consensus 312 ~~i~~~~~~~ 321 (579)
.+++++.|+
T Consensus 421 -~la~~~~dg 429 (445)
T 2ovr_B 421 -VCAVGSRNG 429 (445)
T ss_dssp -EEEEECSSS
T ss_pred -EEEEcccCC
Confidence 667777665
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=4.1e-29 Score=256.80 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=183.7
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| ++++|++|+.||+|+|||++++........+.. ...+.++.|.+.
T Consensus 163 H~~~V--~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~---- 220 (435)
T 4e54_B 163 AGGSI--TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI----------------NIWFCSLDVSAS---- 220 (435)
T ss_dssp SSCCC--CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC----------------SCCCCCEEEETT----
T ss_pred CCCCE--EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC----------------CccEEEEEECCC----
Confidence 45788 4559998 789999999999999999987655433322111 123345555543
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeE---ee
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGK---FR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~---~~ 156 (579)
+.+|++|+.+|.|++||+.... +.. +.+|...|++++|+|+++ ++++|+.|+.|++||+++++.... ..
T Consensus 221 -----~~~l~~g~~dg~i~~wd~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 221 -----SRMVVTGDNVGNVILLNMDGKE-LWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp -----TTEEEEECSSSBEEEEESSSCB-CCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred -----CCEEEEEeCCCcEeeeccCcce-eEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 7889999999999999987544 333 468999999999999886 688999999999999988765443 35
Q ss_pred cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCC------CEEEEEEecCCCEEEEEec---------
Q 008041 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG------AVRFMTFSDNGKYVLSSAV--------- 219 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~------~v~~l~~s~~~~~l~s~~~--------- 219 (579)
+|...|++++|+|+|++|++++ |.|++||+.+++....+..|.. .+....|+|++..+++++.
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 6889999999999999999998 8999999999988877766653 2334567777776666543
Q ss_pred --CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 220 --GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 220 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
.++.|++||..+++.. ......|...+..+..|+ |+|.+|++|+ |++|+|||+++++.
T Consensus 374 ~~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TTCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred ecCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence 3467999999888643 222223444444555687 9999998876 88999999988864
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.4e-27 Score=231.43 Aligned_cols=239 Identities=15% Similarity=0.242 Sum_probs=196.5
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|...+.. ..+.
T Consensus 68 ~~V--~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~------------------~~~~--------- 118 (318)
T 4ggc_A 68 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS------------------LSWN--------- 118 (318)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------------------EEEE---------
T ss_pred CeE--EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE------------------eecC---------
Confidence 457 56699999999999999999999999999999988766543321 1111
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCC
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAST 159 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~ 159 (579)
+..+++++.++.+++|+...+........+|...+..+.|+++++++++++.|+.|++||+.+++. ......+.
T Consensus 119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 667999999999999999987665555578999999999999999999999999999999987753 34455677
Q ss_pred CCeeEEEEccCCCEEE---EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008041 160 KGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~---~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~~d~~i~vwd~~~~~ 233 (579)
+.|.++.++|++..++ +++ +.|++||.+........ .+...+..+.|+|+++.+++++ ..|+.|++||+++++
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 8999999999776443 333 79999999988776654 4778899999999999887754 368999999999876
Q ss_pred cccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
. +..+..|...+.++.|+ |+|++|++++.||+|++||+.+.
T Consensus 276 ~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 276 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCC
T ss_pred E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCC
Confidence 3 45666667778888888 99999999999999999998654
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6.1e-28 Score=247.63 Aligned_cols=255 Identities=13% Similarity=0.135 Sum_probs=198.8
Q ss_pred ccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC----------CeEEEEecCCCCCCEEEEEEccCCC-EEE
Q 008041 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIY 133 (579)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----------~~~~~~~~~~h~~~V~~l~~~~~~~-~l~ 133 (579)
...++++.|.+.+ +.++++++.+|.|++||+.+ ......+ .+|...|++++|+|++. +|+
T Consensus 128 ~~~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 128 EGEVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp SSCCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEE
T ss_pred CCcEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEE
Confidence 3467778887743 56899999999999999987 3444444 57999999999999998 999
Q ss_pred EEeCCCcEEEEeCCCCce-------eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC---eeeEEeecCCC
Q 008041 134 SAGADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPG 200 (579)
Q Consensus 134 s~~~d~~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~---~~~~~~~~h~~ 200 (579)
+|+.||.|++||+..+.. ...+.+|...|.+++|+| ++.+|++++ |.|++||++++ +.+..+..|..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999999999987432 456778999999999999 677888886 89999999987 57778889999
Q ss_pred CEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEcCCeEEE
Q 008041 201 AVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYI 278 (579)
Q Consensus 201 ~v~~l~~s~~~~-~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i 278 (579)
.|++++|+|+++ .+++++ .|+.|++||++.... .+..+..+...+..+.|+ |++. +|++++.||.|++
T Consensus 279 ~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHV 348 (430)
T ss_dssp CEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTS----CSEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEE
T ss_pred CeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEE
Confidence 999999999998 566666 799999999998542 234455556667778887 8884 7999999999999
Q ss_pred EEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008041 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (579)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (579)
||+......... . . ..++ .........+|...|.+++|+
T Consensus 349 wd~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~ 387 (430)
T 2xyi_A 349 WDLSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWN 387 (430)
T ss_dssp EEGGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEEC
T ss_pred EeCCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEEC
Confidence 998663221100 0 0 0000 011222445788899999999
Q ss_pred CCcc-eeeccccceecccceeee
Q 008041 359 QDGV-LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 359 ~dg~-~l~~s~s~d~~~~~w~~~ 380 (579)
|++. ++ ++++.|+.+++|++.
T Consensus 388 p~~~~~l-~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 388 PNEPWII-CSVSEDNIMQVWQMA 409 (430)
T ss_dssp SSSTTEE-EEEETTSEEEEEEEC
T ss_pred CCCCCEE-EEEECCCCEEEeEcc
Confidence 9999 56 999999999999985
No 108
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=3.6e-28 Score=243.41 Aligned_cols=193 Identities=18% Similarity=0.184 Sum_probs=161.2
Q ss_pred EEEEccCCCEEEEEe--CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg~~lasg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+++|||||+++|+++ .|++|+|||+.+++++..+. |...+.++.|+++ +.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------g~ 189 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------GK 189 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------SS
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------Cc
Confidence 459999999987554 68999999999999988875 4445555555554 77
Q ss_pred EEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEeCCCCce----eeEeecC
Q 008041 88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS 158 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~----~v~iwd~~~~~~----~~~~~~~ 158 (579)
++++++ ++.+.+|+..+++.+ .....+|...|.+++|+|+++++++++.|+ .++.||+..+.. ...+.+|
T Consensus 190 ~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 190 VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence 788877 455677777776654 345567899999999999999999999887 688899876643 3457788
Q ss_pred CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
...|++++|+|||++||+|+ ++|+|||+++++++.++ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN 344 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence 89999999999999999998 89999999999999886 78999999999999999999998 7999999999754
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1e-27 Score=242.70 Aligned_cols=232 Identities=12% Similarity=0.025 Sum_probs=171.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEE----EecCCCCCCEEEEEEcc--------CCCEEEEEeCCCcEEEEeCCCCceee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~----~~~~~h~~~V~~l~~~~--------~~~~l~s~~~d~~v~iwd~~~~~~~~ 153 (579)
+.++++++.|++|++||..+++... ..+.+|.+.|++++|+| |+++|++|+.|++|++||+.++.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 5689999999999999999987543 23578999999999998 88999999999999999999988888
Q ss_pred EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE-------------------------eecCCCCEEEE
Q 008041 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM 205 (579)
Q Consensus 154 ~~~~~~~~v~~l~~~p~g~-~l~~~~--~~i~vwd~~~~~~~~~-------------------------~~~h~~~v~~l 205 (579)
.+..|...+.+++|+|++. +|++++ ++|++||+++++.... ..+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999875 688877 8999999988754322 24677888999
Q ss_pred EEe-cCCCEEEEEecCCCeEEEEEcCCCccccce--------------eeeeeecCceeEEeEEecCCcccCCCcEEEEE
Q 008041 206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 206 ~~s-~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (579)
.|+ |+++.+++++ .|+++++||+...+..... ...........+...++. .+++.++++|
T Consensus 261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg 335 (393)
T 4gq1_A 261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH 335 (393)
T ss_dssp EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence 987 7999999987 7999999999876432100 011111222223333333 1355677788
Q ss_pred EcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008041 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (579)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (579)
+.||+|++||..+++... ....|..
T Consensus 336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~ 360 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM 360 (393)
T ss_dssp TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence 889999999987654321 2235667
Q ss_pred CcEEEeecCCcceeeccccceecccceee
Q 008041 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.|.+++|||||++| +++++++. .+|.+
T Consensus 361 ~V~svafspdG~~L-A~as~~Gv-~lvrL 387 (393)
T 4gq1_A 361 PIVDFCWHQDGSHL-AIATEGSV-LLTRL 387 (393)
T ss_dssp CEEEEEECTTSSEE-EEEESSEE-EEEEE
T ss_pred cEEEEEEcCCCCEE-EEEeCCCe-EEEEE
Confidence 89999999999999 99987765 45544
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.5e-27 Score=242.19 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=213.4
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|+|++.++++++.|+.|++||..+++....+.... ..+| ...+.++.|.+. +.+
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~ 183 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NEL 183 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEE
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEE
Confidence 355999988888888889999999999998876432100 0112 123445566332 678
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
+++++.++.|++||+.+++.+..+ ..|...+.+++|+|+++.+++++ .|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 261 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL 261 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred EEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence 899999999999999999887666 46889999999999999885554 7999999999999988887754 46899999
Q ss_pred ccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 168 SSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 168 ~p~g~~l~~~~----------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
+|+|+.+++++ +.|++||+++++.+..+ .|...+.+++|+|+++++++++..|+.|++||+.+++..
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-- 338 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-- 338 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--
Confidence 99999888765 48999999999887665 466688999999999877666558999999999976533
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc---------------CCeEEEEEcCCceeecccCCeeEEeeeccC
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (579)
..+.+. ..+..+.|+ |+|+++++++. ||.|++||..+++.+..
T Consensus 339 ---~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~------------- 396 (433)
T 3bws_A 339 ---KSIPVF-DKPNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF------------- 396 (433)
T ss_dssp ---EEEECS-SSEEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE-------------
T ss_pred ---EEecCC-CCCCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE-------------
Confidence 333333 334567777 99999988876 46888888776544321
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
+.. ...+..++|+|||++|.++++.|+++++|++.
T Consensus 397 ------------------------------------------~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 397 ------------------------------------------WEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ------------------------------------------EEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ------------------------------------------ecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 111 22578899999999993444569999999874
No 111
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.4e-27 Score=245.47 Aligned_cols=239 Identities=14% Similarity=0.262 Sum_probs=191.8
Q ss_pred CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 2 ~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+.++| .+++| ++++|++|+.||.|++||+.+++....+.+|...+.+ +.|.
T Consensus 172 h~~~v--~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~------------------l~~~------- 222 (435)
T 1p22_A 172 HTGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH------------------LRFN------- 222 (435)
T ss_dssp CSSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE------------------EECC-------
T ss_pred CCCcE--EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE------------------EEEc-------
Confidence 34667 54466 8899999999999999999999999988766654443 3332
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+..+++|+.||.|++||+.++.... ....+|...|.++.| +++++++|+.||.|++||+.+++.+..+.+|.
T Consensus 223 ----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (435)
T 1p22_A 223 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296 (435)
T ss_dssp ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC
Confidence 4579999999999999999876542 445789999999999 78899999999999999999999999999999
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS- 236 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~- 236 (579)
..|.++.++ ++++++|+ |.|++||+++++.+.++.+|...|.++.| ++.++++++ .||.|++||+..+....
T Consensus 297 ~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 297 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCccc
Confidence 999999995 67888887 89999999999999999999999999999 688999988 79999999987654211
Q ss_pred ---ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
..++..+..+...+..+.| ++.+|++++.||.|++||+.+....
T Consensus 372 ~~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 372 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC-------
T ss_pred cccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 1134445555555555655 5678999999999999999876554
No 112
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=262.87 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=195.2
Q ss_pred CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008041 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~ 159 (579)
+.++++|+.||.|++||+.. ++....+ .+|.++|++++|+|+ ++++++|+.||.|++||+.+++ .+..+.+|.
T Consensus 21 g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 77899999999999999984 4444444 789999999999988 9999999999999999999887 677788899
Q ss_pred CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008041 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG 220 (579)
Q Consensus 160 ~~v~~l~~~p~--g~~l~~~~--~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~-------------~~~~l~s~~~~ 220 (579)
..|++++|+|+ ++.+++|+ |.|++||++++ .....+.+|...|.++.|+| ++.++++++ .
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~ 178 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A 178 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-T
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-C
Confidence 99999999999 99999998 89999999887 34556788999999999999 588899987 7
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCC---CcEEEEEEcCCeEEEEEcCCceeecccCCeeEEe
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (579)
||.|++||++++... ......+..+...+.++.|+ |+ +.+|++++.||.|++||+.+++.....
T Consensus 179 dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~s-----p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~------- 245 (753)
T 3jro_A 179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK------- 245 (753)
T ss_dssp TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEESSSCEEEEEESSSSSCCBC-------
T ss_pred CCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEec-----cCCCCCCEEEEEecCCEEEEecCCCCCCccee-------
Confidence 999999999887532 22444555666777888888 88 899999999999999998765321000
Q ss_pred eeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008041 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (579)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (579)
. + .....|...+.+++|+|||.++ ++++.|+.+++|
T Consensus 246 ----------~-----~----------------------------~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vw 281 (753)
T 3jro_A 246 ----------T-----L----------------------------LKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW 281 (753)
T ss_dssp ----------C-----B----------------------------SSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECC
T ss_pred ----------E-----E----------------------------eccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEE
Confidence 0 0 0012466789999999999999 999999999999
Q ss_pred eee
Q 008041 378 YVQ 380 (579)
Q Consensus 378 ~~~ 380 (579)
++.
T Consensus 282 d~~ 284 (753)
T 3jro_A 282 KEN 284 (753)
T ss_dssp BCC
T ss_pred ecC
Confidence 985
No 113
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.9e-27 Score=242.83 Aligned_cols=257 Identities=11% Similarity=0.107 Sum_probs=186.9
Q ss_pred CcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCeEEEEec---cCcc------cccccccc--------------cc
Q 008041 4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYG--------------NR 58 (579)
Q Consensus 4 ~~V~~l~~~fspdg--~~lasg~~dg~i~vwd~~~~~~~~~~~---~~~~------~~~~~~~~--------------~~ 58 (579)
++| .+++|+|++ .+|++++.||+|++||+.++....... .+.+ .+....+. ..
T Consensus 94 ~~V--~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKI--NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCC--CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred Cce--EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 678 455999998 799999999999999998765532110 0000 00000000 00
Q ss_pred ccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEE------ecCCCCCCEEEEEEccCC-C
Q 008041 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWR------LSDCHPGGVSAISFATHG-S 130 (579)
Q Consensus 59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~------~~~~h~~~V~~l~~~~~~-~ 130 (579)
+..+| ...+.++.|.+. +.++++| .||.|++||+.++ +.... ...+|...|++++|+|++ +
T Consensus 172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 01123 345677888763 6778888 8999999999954 44332 246899999999999998 9
Q ss_pred EEEEEeCCCcEEEEeCCCCce----eeEeecCCC------------CeeEEEEccCCCEEEEEC-CeEEEEECCC-Ceee
Q 008041 131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM 192 (579)
Q Consensus 131 ~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~~p~g~~l~~~~-~~i~vwd~~~-~~~~ 192 (579)
+|++|+.||.|++||+++++. +..+..|.. .|.+++|+|+|++|++++ +.|++||+++ ++.+
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence 999999999999999999887 788888876 899999999999999988 9999999997 8888
Q ss_pred EEeecCCCC---------------EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee-----------------
Q 008041 193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV----------------- 240 (579)
Q Consensus 193 ~~~~~h~~~---------------v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~----------------- 240 (579)
..+.+|... +..++|+|++++|++++ .|+.|++||+.+++.......
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence 888888642 23489999999999887 799999999988753210000
Q ss_pred -----------eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
... .....+..+.|+ |++.+|++++.++ +++|..
T Consensus 400 ~~~~~~~~~~~~~~-~~~~~i~~~~~~-----p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 400 SGKRKKDEISVDSL-DFNKKILHTAWH-----PKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp SSCCCTTCEEGGGC-CTTSCCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred cCCccccccccccc-ccCCceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence 000 111234456676 9999999988775 777764
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=7.1e-26 Score=229.15 Aligned_cols=265 Identities=13% Similarity=0.099 Sum_probs=206.6
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-EEEECCC
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g 96 (579)
.++++++.|+.|++||+.++++...+..+.. ..++.|.+. +..+ ++++.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-------------------~~~~~~s~d---------g~~l~~~~~~d~ 54 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-------------------PMGAVISPD---------GTKVYVANAHSN 54 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-------------------EEEEEECTT---------SSEEEEEEGGGT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-------------------cceEEECCC---------CCEEEEECCCCC
Confidence 4677888999999999999999888764432 234555443 5545 6666899
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE-
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML- 174 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l- 174 (579)
.|++||+.+++.+..+.. + ..+.+++|+|++++++.+ +.|+.|++||+.+++.+..+..+ ..+.+++|+|+|+.+
T Consensus 55 ~i~v~d~~~~~~~~~~~~-~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPA-G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred eEEEEECCCCeEEEEEEC-C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999998876643 3 389999999999987654 46799999999999988887754 478999999999977
Q ss_pred EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 175 ~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (579)
++++ +.|++||+.+++.+..+..| ..+.+++|+|++++++.++..|+.|++||+.+++.. ....+.. .+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~ 204 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG 204 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence 5665 89999999999998888765 456999999999988655557899999999887533 3344443 4556
Q ss_pred EEecCCcccCCCcEEEEEE---cCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceE
Q 008041 253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (579)
+.|+ |++++|++++ .++.|++||+.+++.+..
T Consensus 205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~---------------------------------------- 239 (391)
T 1l0q_A 205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITAR---------------------------------------- 239 (391)
T ss_dssp EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEE----------------------------------------
T ss_pred eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEEE----------------------------------------
Confidence 7777 9999999988 689999999877653211
Q ss_pred EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
+..|. .+.+++|+|||+++.++++.|+.+++|++.+
T Consensus 240 ---------------~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 240 ---------------IPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp ---------------EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ---------------EecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 11122 4578899999998757888899999999853
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=232.99 Aligned_cols=250 Identities=18% Similarity=0.194 Sum_probs=191.3
Q ss_pred CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 2 ~~~~V~~l~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
+.++| .+++|+| ++++|++|+.||.|++||+.+++....+.. . ....++.|.+..++
T Consensus 98 ~~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~- 155 (408)
T 4a11_B 98 HRYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E------------------ETVYSHHMSPVSTK- 155 (408)
T ss_dssp CSSCE--EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S------------------SCEEEEEECSSCSS-
T ss_pred CCCcE--EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-C------------------CceeeeEeecCCCC-
Confidence 45678 5569999 778999999999999999999998877642 1 23445566555433
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEe---
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKF--- 155 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~-~~~~~--- 155 (579)
+.++++++.+|.|++||+.+++.+..+ .+|...|++++|+|++++ +++++.||.|++||++++. .+..+
T Consensus 156 -----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 156 -----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp -----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred -----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 668999999999999999999887665 679999999999999985 8899999999999998765 33333
Q ss_pred ------------ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEE
Q 008041 156 ------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 156 ------------~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~s 216 (579)
..|...|.+++|+|+++++++++ |.|++||+.+++....+.++. ..+........+..+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 56888999999999999999987 899999999987765543322 11222222233344555
Q ss_pred EecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
++ .|+.|++||+.+++. +..+..+...+.++.|+ |++.+|++++.||.|++||+.+++.+...
T Consensus 310 ~~-~~~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 310 VP-YGSTIAVYTVYSGEQ-----ITMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp EE-ETTEEEEEETTTCCE-----EEEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC-------
T ss_pred Ee-cCCEEEEEECcCCcc-----eeeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 55 589999999998763 35556666677788888 99999999999999999999988776543
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-26 Score=229.80 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=178.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCC---------eEEEEeccCccccccccccccccccccccccceEEee
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 74 (579)
.+|+.+ +|+|+ +++|+.|++|++|+.... +.+..+. .+| ...+.++.|.
T Consensus 77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~v~~~~~~ 134 (343)
T 3lrv_A 77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE----------------VDS-ANEIIYMYGH 134 (343)
T ss_dssp ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE----------------CCC-SSCEEEEECC
T ss_pred CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee----------------cCC-CCCEEEEEcC
Confidence 456545 88888 999999999999987643 3222222 011 1245566665
Q ss_pred ecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-e
Q 008041 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-G 153 (579)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~ 153 (579)
+.. .+.++++|+.||.|++||+.+++........|...|++++|+|+|.++++|+.||.|++||+++++.. .
T Consensus 135 ~~~-------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 135 NEV-------NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS 207 (343)
T ss_dssp C----------CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE
T ss_pred CCC-------CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc
Confidence 511 17789999999999999999999865554556778999999999999999999999999999999887 7
Q ss_pred Eeec-CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec---CCCCEE--EEEEecCCCEEEEEecCCCeEEE
Q 008041 154 KFRA-STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~---h~~~v~--~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
.+.. |..+|++++|+|+|.+|++++ +.|++||+++++.+..+.. |...+. +++|+|+|++|++++..|+.+++
T Consensus 208 ~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 208 RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp ECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 8888 999999999999999999998 8999999999876555443 444454 69999999999998744999999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEEecCCcccC---CCcEEEEEEcCCeEEEEE
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY 280 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd 280 (579)
|++...... +.. .....+.|. + +...+++++.||.+.++-
T Consensus 288 ~~~~~~~~~-----~~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 288 YKFDKKTKN-----WTK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp EEECTTTCS-----EEE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred EEEcccccc-----eEe----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence 999776533 111 233445554 5 788999999999998874
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=242.64 Aligned_cols=249 Identities=14% Similarity=0.174 Sum_probs=189.7
Q ss_pred CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 3 ~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+..| .+++|||||.+||+++.||.|+|||.++ +...+. |...+. ...+.+++|.|.
T Consensus 85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------ 140 (588)
T 2j04_A 85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------ 140 (588)
T ss_dssp SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence 3567 6779999999999999999999999644 555554 433211 123446666553
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeE-------EEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL- 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~-------~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~- 151 (579)
+.+|++|+.||+|++||+.++.. +..+ ..+|.+.|.+++|+|+| +++++.|++|++||+..+..
T Consensus 141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 88899999999999999998853 3333 26788999999999999 88889999999999987773
Q ss_pred --eeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEE--ecCCCEEEEEecCCCeEE
Q 008041 152 --LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 152 --~~~~-~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~s~~~~d~~i~ 225 (579)
.+++ .+|...|.+++|+ |+.+++++ +.|++||+.+++......+|.+.|..+.| +|++..+++++ +||+ +
T Consensus 216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k 291 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K 291 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence 3456 4788899999999 68888888 99999999988774444489999999999 99998888876 7999 9
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcc
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (579)
+|.... +.++ ||+..+++. |+++++|+..... +...+. ...+.+.. ++|
T Consensus 292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va-~SP 340 (588)
T 2j04_A 292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGIS-LSP 340 (588)
T ss_dssp EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEE-ECT
T ss_pred EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEE-ECC
Confidence 999771 2244 888877664 9999999875443 434444 33333333 688
Q ss_pred cccccchhhhhccc
Q 008041 306 SQKSATAAIFAAKL 319 (579)
Q Consensus 306 ~~~~~~~~i~~~~~ 319 (579)
+++ .+++++.
T Consensus 341 dG~----~lA~~~~ 350 (588)
T 2j04_A 341 DGY----SIAIVYD 350 (588)
T ss_dssp TSS----EEEEEEE
T ss_pred CCC----EEEEEEe
Confidence 877 5655554
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-26 Score=235.38 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=188.8
Q ss_pred cccceEEEEccCCCEE-EEEeCCCcEEEEECC--CCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 5 ~V~~l~~~fspdg~~l-asg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
+| .+++|+|+|++| ++|+.||.|+|||+. ++.....+..+. ....++++.|.+.
T Consensus 104 ~v--~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------~~~~v~~~~~sp~----- 160 (450)
T 2vdu_B 104 YI--RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC----------------FSKRPNAISIAED----- 160 (450)
T ss_dssp CE--EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE----------------CSSCEEEEEECTT-----
T ss_pred ce--EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc----------------CCCCceEEEEcCC-----
Confidence 57 556999999996 899999999999999 888777765211 0223455666553
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEE---EecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGK- 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~---~~~~~h~~~V~~l~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~- 154 (579)
+.+|++|+.+|.|++|++.+++... ....+|...|++++|+|+ +++|++++.|+.|++||+.+++.+..
T Consensus 161 ----~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 ----DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ----SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred ----CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 7789999999999999998876532 134679999999999999 99999999999999999999988887
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec-------------------------CCCCEEEEEE
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------------------HPGAVRFMTF 207 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~-------------------------h~~~v~~l~~ 207 (579)
+.+|...|.+++|+ ++++|++++ +.|++||+++++.+..+.. +...|.++.|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 56899999999999 999999998 8999999999998888763 2357899999
Q ss_pred ecCCCEEEEEecCCCeEEEEEc--CCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc------CCeEEEE
Q 008041 208 SDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIW 279 (579)
Q Consensus 208 s~~~~~l~s~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iw 279 (579)
+|+++++++++..|+.|++|++ ..... ...+..+..+ ..+..+.|+ |++.++++++. ++.|.+|
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--l~~~~~~~~~-~~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGD--LALKQIITFP-YNVISLSAH-----NDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTC--EEEEEEEECS-SCEEEEEEE-----TTEEEEEECCTTCCSSCCCSEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCc--eeeccEeccC-CceEEEEec-----CCcEEEEEecccCCCCCCcceEEE
Confidence 9999999998756999999999 43321 1234444444 445667776 75444444343 4557888
Q ss_pred EcC
Q 008041 280 YGQ 282 (579)
Q Consensus 280 d~~ 282 (579)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 119
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.8e-26 Score=228.91 Aligned_cols=251 Identities=10% Similarity=0.008 Sum_probs=192.6
Q ss_pred cccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 008041 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMV 141 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v 141 (579)
..++++.|.+. +.++++++.+|.|++||+.+++ ..... .+|...|++++|+|+++ ++++++.||.|
T Consensus 12 ~~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 12 DYISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CcEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 35666777663 6789999999999999999877 22233 47999999999999999 99999999999
Q ss_pred EEEeC-CCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---------CeeeEEeecCCCCEEEEEE
Q 008041 142 CEIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTF 207 (579)
Q Consensus 142 ~iwd~-~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~ 207 (579)
++||+ .+++. ..+.+ |...|.+++|+| ++.+++++ +.|++||+++ ++.+..+. |...|.+++|
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 99999 77754 67788 999999999999 99999888 8999999988 77776666 8899999999
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCC-CccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEEcCCeEEEEEcCCce
Q 008041 208 SDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 208 s~~~~~l~s~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
+|++ +++++ .|+.|++||++. .... .......+...+.++.|+ | ++.++++++.||.|++|+++...
T Consensus 159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CSSE--EEEEE-STTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred cCCc--EEEEe-CCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9987 77776 799999999988 5432 112223444556777887 9 99999999999999999987651
Q ss_pred eecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008041 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (579)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (579)
.-...... ..... ... .. .-..|...+.+++|+|+|.+|
T Consensus 228 ~~~~~~~~-~~~~~------~~~-----------------------------~~----~~~~~~~~i~~~~~s~~~~~l- 266 (342)
T 1yfq_A 228 DDYNSSKR-FAFRC------HRL-----------------------------NL----KDTNLAYPVNSIEFSPRHKFL- 266 (342)
T ss_dssp CSTTCTTC-EEEEC------CCC-----------------------------CT----TCCSSCCCEEEEEECTTTCCE-
T ss_pred cccccccc-eeeec------ccc-----------------------------cc----cccccceeEEEEEEcCCCCEE-
Confidence 00000000 00000 000 00 001466689999999999999
Q ss_pred ccccceecccceeeee
Q 008041 366 MSQSLLKSKRGRYVQN 381 (579)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (579)
++++.|+.+++|++.+
T Consensus 267 ~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 267 YTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEETTSCEEEEETTT
T ss_pred EEecCCceEEEEcCcc
Confidence 9999999999999853
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.2e-26 Score=232.96 Aligned_cols=239 Identities=10% Similarity=0.007 Sum_probs=161.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEE-----eccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTE-----FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
.+++++.+||+|+.|++|+|||..++..... +.+|... +.++.|.|..... ...++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~------------------v~~v~~~p~~~~~-~~~d~ 156 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF------------------VNDIDIADVYSAD-NRLAE 156 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC------------------EEEEEEEEEECTT-CSEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCc------------------eEEEEEccccccc-cCCCC
Confidence 4566778999999999999999998876432 3344444 4455555421100 00016
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~---------- 155 (579)
.+|++|+.|++|+|||+.++..+..+ .+|..+|.+++|+|++. +|++++.|++|++||+.+++.....
T Consensus 157 ~~las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp EEEEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred CEEEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 78999999999999999988876565 46889999999999875 7999999999999999887543322
Q ss_pred ---------------ecCCCCeeEEEEc-cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec--------
Q 008041 156 ---------------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------- 209 (579)
Q Consensus 156 ---------------~~~~~~v~~l~~~-p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-------- 209 (579)
.+|...+.++.|+ |+|+.+++++ +.+++||+.+++....+..|...+..+.+.|
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 3466788999987 7999999998 8999999998877766666655544443332
Q ss_pred -----------CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041 210 -----------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 210 -----------~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (579)
.+..++++++.|+.|++||+.+++.. .....+...+..++|+ |||++||+++.+| +.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-----~~~~~~~~~V~svafs-----pdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-----SIPIQLGMPIVDFCWH-----QDGSHLAIATEGS-VLL 384 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-----EEEEECSSCEEEEEEC-----TTSSEEEEEESSE-EEE
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-----EEecCCCCcEEEEEEc-----CCCCEEEEEeCCC-eEE
Confidence 23445555558999999999987644 2223344467788888 9999999998766 555
Q ss_pred EEc
Q 008041 279 WYG 281 (579)
Q Consensus 279 wd~ 281 (579)
|.+
T Consensus 385 vrL 387 (393)
T 4gq1_A 385 TRL 387 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=8.1e-25 Score=209.04 Aligned_cols=248 Identities=14% Similarity=0.089 Sum_probs=178.0
Q ss_pred EEEEEeCCCcEEEEECCCC---eEEEEeccCccccccccccccc------ccccc-ccccceEEeeecccccc-------
Q 008041 19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRL------EREHL-SVDYTCMKWLSVDRKKK------- 81 (579)
Q Consensus 19 ~lasg~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~w~~~~~~~~------- 81 (579)
.+++++ ...|++|+..++ +..+++..+..++..+.+.++. .-|++ ...+..+.+.|.++...
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 455566 568999999999 8999999999999988888841 11222 12344444444421100
Q ss_pred -----cccCCcEEEEEE---CCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC
Q 008041 82 -----RKLGSSLLVLGT---GGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 82 -----~~~~~~~l~~~~---~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~~~d~~v~iwd~~~~ 149 (579)
.......++.++ .++.|++|++. +|+.+... .+|...++.++|+| ++..|++++.|++|++||+.+|
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 001122333333 37889999984 46665544 47888888889988 7789999999999999999999
Q ss_pred ceeeEeecCCC---CeeEEEEccCCCEEE------------EEC--CeEEEEECCCCeeeEEe-----ecCCCCEEEEEE
Q 008041 150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF 207 (579)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~------------~~~--~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~ 207 (579)
++++++.+|.. .+.+++|+|+|++++ +|+ ++|++||..+++.+..+ .+|...+.+..+
T Consensus 214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 99999986543 677889999999874 344 79999999999987765 367666544444
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 208 s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
+ +.++++++ .|++|++||+.+++. +.++. |....+..+.|+ |||++|++|+.|++|+|||+
T Consensus 294 s--g~~lASgS-~DgTIkIWDl~tGk~-----l~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 K--DHCAAAIL-TSGTIAIWDLLLGQC-----TALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--TTEEEEEE-TTSCEEEEETTTCSE-----EEEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred C--CCEEEEEc-CCCcEEEEECCCCcE-----EEEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence 3 77888877 799999999999873 34554 444455567888 99999999999999999985
No 122
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=223.96 Aligned_cols=272 Identities=11% Similarity=0.021 Sum_probs=193.6
Q ss_pred EECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEE
Q 008041 32 WDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKW 110 (579)
Q Consensus 32 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~ 110 (579)
|+....+.+..+.+|...+. ++.|.+.... +.++++|+.||.|++||+.+ +..+.
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~~~------g~~l~~~~~dg~i~iw~~~~~~~~~~ 79 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIG------------------CLSFSPPTLP------GNFLIAGSWANDVRCWEVQDSGQTIP 79 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEE------------------EEEECCTTSS------SEEEEEEETTSEEEEEEECTTSCEEE
T ss_pred CCCCCcceeEeccCCCCceE------------------EEEEcCCCCC------ceEEEEECCCCcEEEEEcCCCCceeE
Confidence 34455556666666655554 4555443211 47899999999999999998 66554
Q ss_pred EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE--ccCCCEEEEEC--CeEEEEEC
Q 008041 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA--GQLKTFNC 186 (579)
Q Consensus 111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~p~g~~l~~~~--~~i~vwd~ 186 (579)
....+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| +|+++++++++ |.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 5557899999999999999999999999999999999888766 5568999999999 89999999987 89999999
Q ss_pred CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC--
Q 008041 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-- 264 (579)
Q Consensus 187 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (579)
++++.+..+..|. .+.++.+.+ ..+++++ .|+.+.+|++...... .............+..+. +++
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~ 226 (368)
T 3mmy_A 159 RSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AERGLIVYQLENQPSE---FRRIESPLKHQHRCVAIF-----KDKQN 226 (368)
T ss_dssp SCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GGGCEEEEECSSSCEE---EEECCCSCSSCEEEEEEE-----ECTTS
T ss_pred CCCcEEEEEecCC-CceEEEecC--CeeEEEe-CCCcEEEEEeccccch---hhhccccccCCCceEEEc-----ccCCC
Confidence 9999998888664 666666664 4667776 5999999999876532 111111111222233322 222
Q ss_pred --cEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCcee
Q 008041 265 --LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (579)
Q Consensus 265 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 342 (579)
..+++++.||.|++||+.......... ... .... ....
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~----~~~------~~~~------------------------------~~~~ 266 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYINPPNPAKDNF----TFK------CHRS------------------------------NGTN 266 (368)
T ss_dssp CEEEEEEEETTSEEEEEESSCSCHHHHSE----EEE------CSEE------------------------------C---
T ss_pred CCCeEEEecCCCcEEEEecCCCCccccce----eee------eeec------------------------------cccc
Confidence 339999999999999987653211000 000 0000 0000
Q ss_pred EEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008041 343 QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (579)
Q Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (579)
.....|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA 304 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred ccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence 0122456689999999999999 9999999999999863
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=4.2e-24 Score=216.07 Aligned_cols=239 Identities=10% Similarity=0.065 Sum_probs=188.8
Q ss_pred eEEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+++|+|+|+++ ++++.|+.|++||..+++....+..+. .+.++.|.+. +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spd---------g~ 86 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPD---------GK 86 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SS
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCC---------CC
Confidence 566999999987 567789999999999999988776432 3344555443 55
Q ss_pred EEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 88 LLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 88 ~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
.+++ +..++.|++||+.+++.+..+. +...+.+++|+|+|+.+ ++++.|+.|++||+.+++.+..+..+ ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 5554 4567999999999999876653 44578999999999987 67788999999999999988888765 467999
Q ss_pred EEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceee
Q 008041 166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 166 ~~~p~g~~l~-~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--~d~~i~vwd~~~~~~~~~~~~ 240 (579)
+|+|+|+.++ +++ +.|++||+++++.+..+. +...+.+++|+|+++++++++. .++.|++||+.+++..
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----- 237 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----- 237 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence 9999999874 554 799999999998887776 5567899999999999998874 5899999999887533
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEE-EEEEcCCeEEEEEcCCceeeccc
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..+..+.. ...+.++ |++++| ++++.|+.|++||+.+++.+..+
T Consensus 238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 33333333 4556776 999887 56678999999999998876544
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=4.8e-25 Score=219.89 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=173.8
Q ss_pred EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++++++++++ +|+.|++|+|||..+++++..+. +...+ .++.|.+ ..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v------------------~~v~~~~-----------~~ 112 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPV------------------KDLFLSR-----------EF 112 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCE------------------EEEEECS-----------SE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCce------------------EEEEEcC-----------CE
Confidence 348888888885 56778999999999999988775 22223 3333322 22
Q ss_pred EEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEE--EeCCCcEEEEeCCCCc---------------
Q 008041 89 LVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS--------------- 150 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s--~~~d~~v~iwd~~~~~--------------- 150 (579)
++++ .++.|++||+.++ +.+..+. . +...+++++ .++++ |+.||.|++||+.+++
T Consensus 113 ~~~~-~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 113 IVVS-YGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL 185 (355)
T ss_dssp EEEE-ETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred EEEE-EcCEEEEEECCCCceeeEEec-c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence 3443 5789999999988 5543332 1 455566777 56655 5789999999998765
Q ss_pred -eeeEeecCCCCeeEEEEccCCCEEEEEC--Ce-EEEEECCCCeeeEEee-c-CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 151 -LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 151 -~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~-i~vwd~~~~~~~~~~~-~-h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
.+..+.+|...|++++|+|+|++|++|+ ++ |++||+++++++.++. + |...|.+++|+|++++|++++ .|++|
T Consensus 186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v 264 (355)
T 3vu4_A 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTL 264 (355)
T ss_dssp -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEE
T ss_pred cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEE
Confidence 2678999999999999999999999998 87 9999999999999998 5 999999999999999999988 79999
Q ss_pred EEEEcCCCcccccee-----------------eeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 225 ALWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
++||+.......... .+.+.. .......+.|+ +++++|++++.||.+++|++..++
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCC
Confidence 999998764221100 000110 01112445676 999999999999999999976543
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.4e-25 Score=214.30 Aligned_cols=212 Identities=11% Similarity=0.053 Sum_probs=160.2
Q ss_pred CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEE-eccCcccccccccccccc-----ccccccccceEEe
Q 008041 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLE-----REHLSVDYTCMKW 73 (579)
Q Consensus 4 ~~V~~l~~~fspd----g~~lasg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~w 73 (579)
++|+.+ +|||| ++++++++.+ ++||++.+++.+.. ..+|...+....++++-. .+| ....+.+.|
T Consensus 112 ~~v~sl--a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~-~~~v~~l~f 186 (356)
T 2w18_A 112 REIRAL--FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM-PPEETILTF 186 (356)
T ss_dssp EEEEEE--CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC-CCSSCEEEE
T ss_pred cceEEE--EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccC-CCceeeEEe
Confidence 356555 99999 9999998854 78899988888777 467888888777776510 011 345667777
Q ss_pred eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEE------------EEEeCCC
Q 008041 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGADG 139 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l------------~s~~~d~ 139 (579)
.+.+.. +.+|++|+.|++|+|||+.+|+++..+..+| ...+.+++|+|+|.++ ++|+.|+
T Consensus 187 s~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 187 AEVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp EEEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCE
T ss_pred eccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCc
Confidence 774433 7899999999999999999999987774332 3468888999999876 5678899
Q ss_pred cEEEEeCCCCceeeEe-----ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE-EEEEecCC
Q 008041 140 MVCEIDPLTGSLLGKF-----RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSDNG 211 (579)
Q Consensus 140 ~v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~-~l~~s~~~ 211 (579)
+|++||..+++.+..+ .+|...+.+..+ ++..+++++ ++|+|||+.+++++.++.+|...+. +++|+|||
T Consensus 261 tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 261 QLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred EEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence 9999999999887765 355555544444 478889887 8999999999999999999987655 68999999
Q ss_pred CEEEEEecCCCeEEEEEc
Q 008041 212 KYVLSSAVGERYIALWRT 229 (579)
Q Consensus 212 ~~l~s~~~~d~~i~vwd~ 229 (579)
++|++++ .|++|++||+
T Consensus 339 ~~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 339 SHLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp SEEEEEC-TTSCEEEEEE
T ss_pred CEEEEEE-CCCcEEEecC
Confidence 9999987 7999999996
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.1e-24 Score=228.87 Aligned_cols=323 Identities=8% Similarity=-0.012 Sum_probs=227.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+|+|++.++++++.|++|.+||..+++++.++..... +..+.|+++ +.++++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v 195 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV 195 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence 5899999999999999999999999999988863222 333444444 888999
Q ss_pred EECCCeEEEEEc--cCCeEEEEecCCCCCCEEEEEEcc----CCCEEEEEe-CCCcEEEEeCCCCceeeEeecC------
Q 008041 92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------ 158 (579)
Q Consensus 92 ~~~~g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~------ 158 (579)
++.++.|.+||+ .+++.+..+. +...+..++|+| +|+++++++ .+++|.+||..+++++.++..+
T Consensus 196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 999999999999 8888877663 456789999999 999999888 4899999999999998887642
Q ss_pred -----CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 159 -----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 159 -----~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
...+.++.++|++..+++.. +.|.+||..+.+.+. .+ .+...+..+.|+|+|+++++++..+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22788999999887766554 899999998876544 44 35667889999999999887776789999999
Q ss_pred cCCCccccceeeeee---ecCceeEEeEEecCCcccCC-CcEEEEEE-cCCeEEEEEcCC-------ceeecccCCeeEE
Q 008041 229 TDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKIL 296 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~ 296 (579)
+.+++.. ..... .|+..... ++. |+ +..++++. .|++|.+||..+ ++.++.++.....
T Consensus 353 ~~tg~l~---~~i~~g~~ph~g~g~~--~~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 353 SKDRRLS---ALVDVGKTPHPGRGAN--FVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp TTTTEEE---EEEECSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CCCCeEE---EeeccCCCCCCCCCcc--cCC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 9998643 11111 13322222 233 66 55566665 589999999988 6665554432211
Q ss_pred eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE--------ecCCCCcEEEeecCCcceeeccc
Q 008041 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ 368 (579)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~~~~s~dg~~l~~s~ 368 (579)
... ..++|+++ .+++++.-+--.-.+..+.+.+-......++.+ ..+...+..+.|+|||+.+.+|.
T Consensus 423 ~~~-v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 423 SLF-IKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp CCC-EECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred ceE-EEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 111 12577777 566654211000002234444432222222443 24566799999999999984442
Q ss_pred ----cceecccceeee
Q 008041 369 ----SLLKSKRGRYVQ 380 (579)
Q Consensus 369 ----s~d~~~~~w~~~ 380 (579)
+.|++|.+|+.+
T Consensus 498 ~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 498 WNGKNDSSALVVVDDK 513 (543)
T ss_dssp ECCTTSCCEEEEEETT
T ss_pred ecCCCCCCeEEEEECC
Confidence 358999999975
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.1e-23 Score=214.48 Aligned_cols=311 Identities=9% Similarity=-0.029 Sum_probs=214.0
Q ss_pred EEccCCC-EEEEEe----CCC----cEEEEEC--CCCeEE--EEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 12 SFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 12 ~fspdg~-~lasg~----~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+|++.|. ++++|+ .|| .|++||+ .+++++ ..+.++...+....+.+. ...+....+.+
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~g~~--- 139 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTAS------DEVFEKLTGIK--- 139 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHH------HHHHHHHHSSC---
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHH------HHHHHHHcCCC---
Confidence 7888874 666876 467 8999999 899877 446666655544433321 00000000000
Q ss_pred ccccccCCcEEEEEECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCC
Q 008041 79 KKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTG 149 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---~v~iwd~~~~ 149 (579)
...+..++.++.+ +.|++||+..+.. ..+ .+|...|.+++|+|+|++|++++.++ .|++||+.++
T Consensus 140 ----~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 140 ----GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp ----CCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred ----CcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 0003345555543 6899999986543 233 46889999999999999999999875 9999999988
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEE-EEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--
Q 008041 150 SLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-- 222 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~-~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~-- 222 (579)
+.. .+..+...+.+++|+|||+.|+ +++ ..|++||+.+++. ..+..|...+.++.|+|||++|++++..++
T Consensus 214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 775 4666788999999999999888 554 3699999998875 567788899999999999999998874345
Q ss_pred eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCCceeecccCCeeEEeee
Q 008041 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSS 299 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (579)
.|++||+.+++.. .+..+...+....|+ |+|++|++++.+ +.|++||+.+++...-. ... .+..
T Consensus 292 ~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~~~-~~~~ 358 (415)
T 2hqs_A 292 QVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STF-LDET 358 (415)
T ss_dssp EEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSS-SCEE
T ss_pred EEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEEEec-CCC-CcCC
Confidence 6788898876532 222233445567777 999999988874 58999999988654322 211 1111
Q ss_pred ccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcce
Q 008041 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (579)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (579)
..++|+++ .|+.++.++. ...+.+..- .....+.+..|...|.+++|+|--.+
T Consensus 359 -~~~spdg~----~l~~~s~~~~----~~~l~~~d~--~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 359 -PSLAPNGT----MVIYSSSQGM----GSVLNLVST--DGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp -EEECTTSS----EEEEEEEETT----EEEEEEEET--TSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred -eEEcCCCC----EEEEEEcCCC----ccEEEEEEC--CCCcEEEeeCCCCCCcCCcccccccc
Confidence 12677877 6766666531 123444331 23445677889999999999997654
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.7e-23 Score=214.74 Aligned_cols=236 Identities=9% Similarity=0.055 Sum_probs=187.1
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
++| .+++|+|+|+++++++.|+.|++||+.+++....+..+...+. ++.|.+.
T Consensus 170 ~~v--~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~------------------~~~~~~~------- 222 (433)
T 3bws_A 170 GFV--ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK------------------ILLYDPI------- 222 (433)
T ss_dssp CEE--EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE------------------EEEEETT-------
T ss_pred Cce--eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee------------------EEEEcCC-------
Confidence 356 4559999999999999999999999999998888765554444 4444432
Q ss_pred cCCcEEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--------CCCcEEEEeCCCCceeeE
Q 008041 84 LGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 84 ~~~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--------~d~~v~iwd~~~~~~~~~ 154 (579)
+..++ +++.++.|++||+.+++.+..+ . +...+.+++|+|+|+++++++ .|+.|++||+.+++.+..
T Consensus 223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 223 --RDLVYCSNWISEDISVIDRKTKLEIRKT-D-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp --TTEEEEEETTTTEEEEEETTTTEEEEEC-C-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred --CCEEEEEecCCCcEEEEECCCCcEEEEe-c-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 55554 5557899999999999887665 3 345699999999999999888 488999999999987776
Q ss_pred eecCCCCeeEEEEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----------
Q 008041 155 FRASTKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG----------- 220 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~-~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~----------- 220 (579)
+. +...+.+++|+|+++.++ +++ +.|++||+.+++.+..+. +...+.+++|+|+++++++++..
T Consensus 299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 63 456889999999997654 444 899999999999888776 77889999999999988887743
Q ss_pred ---CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCC
Q 008041 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (579)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 283 (579)
||.|++||+.+++.. ..+... ..+..+.|+ |+|++|++++. ||.|++|+++.
T Consensus 377 g~~dg~v~~~d~~~~~~~-----~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVK-----EFWEAG-NQPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CSSCCEEEEEETTTTEEE-----EEEECS-SSEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred cccceEEEEEECCCCcEE-----EEecCC-CCCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence 469999999887633 333333 345667777 99999998875 99999999763
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5.7e-23 Score=225.88 Aligned_cols=341 Identities=9% Similarity=0.043 Sum_probs=216.3
Q ss_pred CcccceEEEEccCCCEEEEEeC-CC-----cEEEEECCCCeEEEEeccCcccccccccccc--cc--ccccc--cccceE
Q 008041 4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNR--LE--REHLS--VDYTCM 71 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~--~~~~~~ 71 (579)
.+| ..++|||||++|++++. |+ .|++||+.+++....+..+........++.. .. ..+.. ..+..+
T Consensus 37 ~~~--~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTL--MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCC--EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCC--CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456 45599999999999998 88 8999999999887766543221000000000 00 00000 124455
Q ss_pred EeeecccccccccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008041 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~ 148 (579)
.|.|. +..|++++. +.|++||+.++ +.. .+ ..|...+.+++|+|||++|++++ ++.|++||+.+
T Consensus 115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 66553 677888876 99999999988 543 33 46778899999999999999887 56899999998
Q ss_pred CceeeEeecCCCC----------------eeEEEEccCCCEEEEEC--C-------------------------------
Q 008041 149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G------------------------------- 179 (579)
Q Consensus 149 ~~~~~~~~~~~~~----------------v~~l~~~p~g~~l~~~~--~------------------------------- 179 (579)
++.......+... +.+++|+|||+.|++++ +
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 8776554443332 47899999999998875 3
Q ss_pred --eEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEec----CCCeEEEEEcCCCccccceeeeeeecCce--
Q 008041 180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV-- 248 (579)
Q Consensus 180 --~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-- 248 (579)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.+++.. .+........
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~ 337 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP 337 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence 789999988 87654433 47788999999 99999987653 2567999999987643 2222211111
Q ss_pred eEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC-CceeecccCCeeEEeeeccCCcccccccchhhh-hccccceecCC
Q 008041 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIF-AAKLQDIVKPA 326 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 326 (579)
.+....|+ |||+++++++.||.+++|.++ +++ ...+......+.....++++++ .|+ +++.++ ..
T Consensus 338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~---~~ 404 (741)
T 2ecf_A 338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIES---AR 404 (741)
T ss_dssp CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSC---TT
T ss_pred cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCC---Cc
Confidence 22355666 999988998899988887665 233 3333222211111111566766 443 333322 00
Q ss_pred ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce---ecccceee
Q 008041 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYV 379 (579)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~ 379 (579)
...++..... ......+.. ...+..++|||||++++++.+.. ..+++++.
T Consensus 405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 1223333211 112233433 45678999999999985554432 34566654
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5.9e-22 Score=195.42 Aligned_cols=287 Identities=9% Similarity=0.050 Sum_probs=195.0
Q ss_pred EEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 12 ~fspdg~~-lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
.|++++++ +++++.++.|.+||..+++....+..+...+ .+.|.+. +..++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~s~d---------g~~l~ 55 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-------------------DTAITSD---------CSNVV 55 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-------------------EEEECSS---------SCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-------------------eEEEcCC---------CCEEE
Confidence 47777665 6677789999999999999887765332222 3333332 55556
Q ss_pred EEEC-CCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 91 ~~~~-~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ..+.++
T Consensus 56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 5555 88999999999987 4444 44566666699999999998555443 8999999999988887653 456999
Q ss_pred EEccCCCEEEEEC---Ce-EEEEECCCCeee----EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 166 ~~~p~g~~l~~~~---~~-i~vwd~~~~~~~----~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
+|+|+|+++++++ +. |.+|++.....+ .....+......++|+|+|+++++++..++.|.+||+.+++...
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT- 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence 9999998666654 67 999998864333 12223445679999999999877776678999999998876410
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhh
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (579)
.+..+... .....+.|+ |+|+++++++. ++.|.+||..+++..... .... . ...+.
T Consensus 213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~-~-~~~~~--------- 269 (331)
T 3u4y_A 213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGH-G-LLIDP--------- 269 (331)
T ss_dssp -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEEC-C-CCCCC---------
T ss_pred -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----cccc-c-cccCC---------
Confidence 12333333 333456676 99998877654 788999999887652100 0000 0 00000
Q ss_pred ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008041 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (579)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (579)
.+......++|+|||++|.++++.++.+++|++.+.
T Consensus 270 ------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 270 ------------------------------RPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ------------------------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 001122567899999988566777789999998643
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=7.5e-23 Score=224.25 Aligned_cols=321 Identities=9% Similarity=0.044 Sum_probs=206.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++|||||+++++ +.||+|++||+.+++....+..+... ...+..+.|.|. +..
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~---------------~~~v~~~~~SpD---------g~~ 74 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REY 74 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSE
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc---------------ccccceEEECCC---------CCE
Confidence 45599999998876 78999999999999887776644321 001233444432 777
Q ss_pred EEEEECC---------CeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 89 LVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 89 l~~~~~~---------g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
|++++.+ +.|++||+.+++.. .+. .+|...+..++|+|||+.|++++. +.|++||+.+++.......
T Consensus 75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 8888764 77999999998762 222 345556899999999999999875 7899999998887766554
Q ss_pred CCCCe------------------eEEEEccCCCEEEEEC--C----------------------------------eEEE
Q 008041 158 STKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QLKT 183 (579)
Q Consensus 158 ~~~~v------------------~~l~~~p~g~~l~~~~--~----------------------------------~i~v 183 (579)
+...+ .+++|+|||+.|++++ + .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 44333 7899999999998875 2 7999
Q ss_pred EECCCCeeeEEeecC------CCCEEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccceeeeeeecCceeE---E
Q 008041 184 FNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFM---D 251 (579)
Q Consensus 184 wd~~~~~~~~~~~~h------~~~v~~l~~s~~~~~l~s~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~ 251 (579)
||+.+++....+..+ ...+..++|+|||+++++.+. .+..|++||+.+++.. .+....+..... .
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQNE 309 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEeccCC
Confidence 999998866666654 567899999999998876642 2357999999887633 222222222111 2
Q ss_pred eEEecCCcccCCCcEEEEE--EcCC------eEEEEE-cCCcee--ecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041 252 CRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
...|+ |||+.|+.. ..+| .|++|| ..+++. ...+......+.....++++++ .|+..+.+
T Consensus 310 ~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~~~ 380 (723)
T 1xfd_A 310 EPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLSTE 380 (723)
T ss_dssp CCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEESS
T ss_pred CceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEEcC
Confidence 45666 999977754 4567 577777 344430 2222211111111112677777 55544333
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEec---CCCCcEEEeecCCcceeeccccce
Q 008041 321 DIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL 371 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~~s~s~d 371 (579)
+. .....++...-.. ......+.. |...+..++|||||++++++.+.+
T Consensus 381 ~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 381 DL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 10 0122333332110 001112222 566688999999999885555443
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.7e-20 Score=186.49 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=184.6
Q ss_pred eEEEEccCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 9 ILTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 9 l~~~fspdg~~lasg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
..++|+|+|+++++++. ++.|.+||..+++....+.... . ...+.|.+.
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~------------------~~~~~~s~d----- 99 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-K------------------PFGATINNT----- 99 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-C------------------CCSEEEETT-----
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-C------------------cceEEECCC-----
Confidence 34599999999888774 5689999999999887775321 1 223344432
Q ss_pred cccCCcEE-EEEECCCeEEEEEccCCeEEEEecCCCCC--------CEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCc
Q 008041 82 RKLGSSLL-VLGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGS 150 (579)
Q Consensus 82 ~~~~~~~l-~~~~~~g~i~iwd~~~~~~~~~~~~~h~~--------~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~ 150 (579)
+..+ ++...++.|.+||+.+++.+..+..++.. .+.++.|+|+|+++++++ .++.|.+||+.+++
T Consensus 100 ----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 100 ----TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp ----TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred ----CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 5544 44555789999999999987666432222 278999999999877776 47899999999999
Q ss_pred eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
.+..+..+...+.+++|+|+|+.+++++ +.|.+||..+++.+..+.. +...+..++|+|+++++++++..++.|
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 255 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEV 255 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence 9888875666788999999999988887 8999999999998877764 556688899999999888877566999
Q ss_pred EEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecccC
Q 008041 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 291 (579)
.+||+.+++.. ........ ..+.|+ |+|+++++++ .++.|.+||..+++.+....
T Consensus 256 ~~~d~~~~~~~-----~~~~~~~~--~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 256 LVVDTRNGNIL-----AKVAAPES--LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVVKTFD 311 (353)
T ss_dssp EEEETTTCCEE-----EEEECSSC--CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCcEE-----EEEEcCCC--ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 99999887643 22222221 345666 9999777666 58999999999988765543
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=3.3e-21 Score=202.29 Aligned_cols=274 Identities=10% Similarity=0.052 Sum_probs=202.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCCceeeEeecCCCCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~--~~~~~~~~~~~~~~~v~ 163 (579)
+.++++++.++.|.+||..+++++..+..++. +.+++|+|+|+++++++.|++|++||+ .+++.+.++.. ...+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~ 225 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEAR 225 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcc
Confidence 66788888899999999999999877754554 899999999999999999999999999 88988888884 45679
Q ss_pred EEEEcc----CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 164 ~l~~~p----~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h----------~-~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
.++|+| ||+++++++ ++|.+||..+++++.++..+ . ..+..+.++|+++.++++...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 999999 999999887 89999999999998887642 2 36889999998887777777899999
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecccCCeeEEe--eeccC
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILS--SSEDV 302 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~ 302 (579)
+||+.+.+.. .+..+.+ ......+.|+ |+|+++++++ .+++|.+||..+++.+.........- .....
T Consensus 306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999886543 1223333 3344556777 9999877665 58999999999998765443110000 00000
Q ss_pred CcccccccchhhhhccccceecCCceEEEEEeCCC------CCceeEEEecCCCCcEEEeecCCcceeecccc-------
Q 008041 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS------- 369 (579)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s------- 369 (579)
+.+++.. .++++... ++.+.+.+-.. ...+.+++.+|...+..++++|||++| .+++
T Consensus 377 ~~p~~g~---~~~s~~~~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~~ 446 (543)
T 1nir_A 377 VHPKYGP---VWSTSHLG------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDAR 446 (543)
T ss_dssp EETTTEE---EEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSHH
T ss_pred CCCCCcc---EEEeccCC------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCcc
Confidence 1233221 33333321 23333333221 256788999998889999999999999 6665
Q ss_pred ceecccceeeee
Q 008041 370 LLKSKRGRYVQN 381 (579)
Q Consensus 370 ~d~~~~~w~~~~ 381 (579)
.++++.+|++.+
T Consensus 447 ~~~~v~v~d~~~ 458 (543)
T 1nir_A 447 ISQSVAVFDLKN 458 (543)
T ss_dssp HHTCEEEEETTC
T ss_pred cCceEEEEECCC
Confidence 378999999853
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=6.2e-21 Score=194.11 Aligned_cols=225 Identities=15% Similarity=0.118 Sum_probs=171.6
Q ss_pred CCEEEEEeCC------CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 17 g~~lasg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+..+++++.+ +.|++||...+ ....+.+|...+....|+++ +..|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd---------------------------g~~la 194 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD---------------------------GSKLA 194 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT---------------------------SSEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC---------------------------CCEEE
Confidence 6677777654 79999999754 34555555544444444444 77889
Q ss_pred EEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeE
Q 008041 91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 91 ~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~--v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+++.++ .|++||+.+++.. .+ ..|...+.+++|+|||+.|+ +++.|+. |++||+.+++. ..+..|...+.+
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 888875 8999999999875 33 45788999999999999877 6666654 99999988876 566778889999
Q ss_pred EEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccc
Q 008041 165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSA 237 (579)
Q Consensus 165 l~~~p~g~~l~~~~---~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d--~~i~vwd~~~~~~~~~ 237 (579)
++|+|||+.|++++ + .|++||+.+++. ..+..|...+.+++|+|+|++|++++..+ ..|++||+.+++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-- 348 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-- 348 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence 99999999888765 2 788899988764 45566778899999999999999887532 58999999887532
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC---eEEEEEcCCce
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~ 285 (579)
.+..+. .+....|+ |+|++|++++.++ .|++||+..+.
T Consensus 349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 222222 55667777 9999999998877 89999987543
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=2.4e-21 Score=211.71 Aligned_cols=333 Identities=9% Similarity=0.034 Sum_probs=204.5
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccCcccccccccccccc-ccccccccceEEeeecccccccccCCcEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLE-REHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|+ |+.+++++.|+ | +||+.+|+.+ ..+..+..... .++..-. .......+.++.|.+. ..+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd----------~~~ 95 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCKFQTTDAFPSFRTLDAGR----------GLV 95 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-----------CCCEEEEETTT----------TEE
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhccccccccCceeEEECCC----------CeE
Confidence 777 66777788788 8 9999999873 33322211000 0000000 0000134566777653 224
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CceeeEeecCCCC---
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKG--- 161 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~~~~~--- 161 (579)
+.+ .++.|++||+.+++..... .+...+.+++|+|||++++++ .|+.|++||+.+ ++.......+...
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 444 5699999999998775333 466778999999999999885 689999999988 7766544433332
Q ss_pred -----------eeEEEEccCCCEEEEEC-----------------------------------CeEEEEECCCCeeeEEe
Q 008041 162 -----------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSDHKKMQKF 195 (579)
Q Consensus 162 -----------v~~l~~~p~g~~l~~~~-----------------------------------~~i~vwd~~~~~~~~~~ 195 (579)
+.+++|+|||+.|++++ ..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 48999999999998874 57999999998765443
Q ss_pred e--cCCCCEEEEEEecCCCEEEEEecCCC-----eEEEEEcCCCccccceeeeeeecCce--eEEeEEecCCcccC--CC
Q 008041 196 S--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDD--AG 264 (579)
Q Consensus 196 ~--~h~~~v~~l~~s~~~~~l~s~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 264 (579)
. .|...+.+++|+|||++|++++ .|+ .|.+||+.+++.. ..+........ .+..+.|+ | ||
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~s-----p~~dg 323 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFV--RTLFVETDKHYVEPLHPLTFL-----PGSNN 323 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEE--EEEEEEECSSCCCCCSCCEEC-----TTCSS
T ss_pred cCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCcee--eEEEEccCCCeECccCCceee-----cCCCC
Confidence 2 4667899999999999998876 354 8999999987322 12222122211 12345666 9 99
Q ss_pred cEEEEEEcCCeEEEEEcC-CceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeE
Q 008041 265 LYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ 343 (579)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 343 (579)
+++++++.||.+++|.++ +++.+..+......+.....++++++ .++.++.+.. .....++...-.. . ...
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~~-~-~~~ 395 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIKG-G-KTK 395 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETTC-C-CCE
T ss_pred EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcCC-C-Cce
Confidence 999999999999999876 45444443332211111112567766 4444433210 0012344443211 1 122
Q ss_pred EEecCCCCcEEEeecCCcceeeccccce---ecccceeeee
Q 008041 344 KILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQN 381 (579)
Q Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~~ 381 (579)
.+ .|...+..++|||||++++.+++.+ ..+++|++.+
T Consensus 396 ~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 396 DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 22 3666789999999999884444433 4588998753
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=8.1e-21 Score=187.38 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=193.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCcc--ccccccccccccccccccccceEEeeecccccccccCCcEE-EEEEC
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG 94 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~ 94 (579)
++|++++.++.|.+||..+++....+..... .+. .+.|.+. +..+ +++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~~l~v~~~~ 54 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM------------------VPMVAPG---------GRIAYATVNK 54 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC------------------CEEECTT---------SSEEEEEETT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc------------------ceEEcCC---------CCEEEEEeCC
Confidence 4789999999999999999998877652221 122 3344332 4444 55556
Q ss_pred CCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCceeeEeecC
Q 008041 95 GGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 95 ~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
++.|.+||+.+++.+..+..++ ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+..
T Consensus 55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 7899999999998876654333 12577899999999988886 579999999999888877765
Q ss_pred CCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----------------
Q 008041 159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---------------- 222 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~---------------- 222 (579)
...+.+++|+|+|++++++++.|++||+.+++.+..+..+... ..+.|+|++++++.++..++
T Consensus 134 ~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 4567889999999999988999999999999988777654311 12378999987766553333
Q ss_pred -------eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeE
Q 008041 223 -------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (579)
Q Consensus 223 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (579)
.|.+||+.+++.. .............+.++ |+|++++++ ++.|++||+.+++.+....
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 277 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRVP---- 277 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred cccccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence 4689999887632 12222233344557777 999999888 7999999987765432110
Q ss_pred EeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008041 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (579)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (579)
. ...+.+++|+|||+++ ++++.++.++
T Consensus 278 ---------------------------------------------------~-~~~~~~~~~s~dg~~l-~~~~~~~~i~ 304 (337)
T 1pby_B 278 ---------------------------------------------------L-PHSYYSVNVSTDGSTV-WLGGALGDLA 304 (337)
T ss_dssp ---------------------------------------------------C-SSCCCEEEECTTSCEE-EEESBSSEEE
T ss_pred ---------------------------------------------------C-CCceeeEEECCCCCEE-EEEcCCCcEE
Confidence 0 1135678999999988 6667799999
Q ss_pred ceeee
Q 008041 376 GRYVQ 380 (579)
Q Consensus 376 ~w~~~ 380 (579)
+|++.
T Consensus 305 v~d~~ 309 (337)
T 1pby_B 305 AYDAE 309 (337)
T ss_dssp EEETT
T ss_pred EEECc
Confidence 99985
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3.2e-20 Score=183.55 Aligned_cols=272 Identities=14% Similarity=0.152 Sum_probs=178.0
Q ss_pred EEEEEeCCCcEEEEECC-CCe--EEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 19 YFAICSGDARIKIWDTL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 19 ~lasg~~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
.+++++.|+.|++||+. ++. ....+. +.. ...++.|.+. +..+++++.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~spd---------g~~l~~~~~~ 58 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG------------------QVQPMVVSPD---------KRYLYVGVRP 58 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS------------------CCCCEEECTT---------SSEEEEEETT
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC------------------CCceEEECCC---------CCEEEEeecC
Confidence 34444679999999985 343 222221 222 2334555443 6667887776
Q ss_pred -CeEEEEEcc--CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCC---CCceeeEeecCCCCeeEEE
Q 008041 96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 96 -g~i~iwd~~--~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~---~~~~~~~~~~~~~~v~~l~ 166 (579)
+.|.+|++. +++. +..+ ..+ ..+.+++|+|+|+++++++. ++.|++||+. .++....+..+ ..+.+++
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCE
T ss_pred CCeEEEEEecCCCCceeecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEE
Confidence 899999998 5553 2233 223 37899999999998877664 8899999994 33444455433 4688999
Q ss_pred EccCCCEEEEEC---CeEEEEECCC-CeeeE----Eeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC--Cccc
Q 008041 167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ 235 (579)
Q Consensus 167 ~~p~g~~l~~~~---~~i~vwd~~~-~~~~~----~~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~--~~~~ 235 (579)
|+|+|+.+++++ +.|++||+.+ ++... .+.. ....+..++|+|+++++++++..++.|.+|++.. ++..
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999777765 8999999987 64432 2332 3357889999999998877765789999999964 3221
Q ss_pred cceeeeeeecC---ceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC--ceeecccCCeeEEeeeccCCcccccc
Q 008041 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN--IEELRNTKATKILSSSEDVNSKSQKS 309 (579)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (579)
........... ......+.|+ |+|++|+++. .++.|.+||+.. ++.. .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~~~~--------~------------- 269 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLS--------K------------- 269 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEE--------E-------------
T ss_pred EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCCceE--------E-------------
Confidence 00011111111 1233456777 9998887655 689999999762 1100 0
Q ss_pred cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
...+..+. .+..++|+|||++|.+++..++.+.+|++.
T Consensus 270 --------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 270 --------------------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --------------------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --------------------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 00111122 267789999999884555578999999774
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.1e-20 Score=182.42 Aligned_cols=221 Identities=11% Similarity=0.069 Sum_probs=156.3
Q ss_pred EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008041 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (579)
Q Consensus 23 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd 102 (579)
++.|++|++||+.+++..... .+...+. ++.|.|. +.++++++ ++.|++||
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~-~~~~~v~------------------~~~~spd---------g~~l~~~~-~~~i~~~d 68 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW-QTPELFE------------------APNWSPD---------GKYLLLNS-EGLLYRLS 68 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EESSCCE------------------EEEECTT---------SSEEEEEE-TTEEEEEE
T ss_pred CCcceeEEEEeCCCCceeeec-cCCcceE------------------eeEECCC---------CCEEEEEc-CCeEEEEe
Confidence 456899999999998876433 3333333 4445442 66777765 88999999
Q ss_pred ccC-CeEEEEecCCC-CCCEEEEEEccCCCEEEEEe--CCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEE-
Q 008041 103 VSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA- 175 (579)
Q Consensus 103 ~~~-~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~--~d~~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~- 175 (579)
+.+ ++..... ..| ...+.+++|+|+|+++++++ .++. |..|++.+++ ...+..+ ..+.+++|+|+|+.++
T Consensus 69 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~ 145 (297)
T 2ojh_A 69 LAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY 145 (297)
T ss_dssp SSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred CCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence 999 7765433 344 47889999999999999998 3344 4445555554 3444433 3589999999999887
Q ss_pred EEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041 176 TAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 176 ~~~--~~i~vwd~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (579)
++. +.+++|+++. +.....+..|...+.++.|+|+++++++++..++.+++|++...... ...+..+...+..
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----VERITDSAYGDWF 221 (297)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----EEECCCCSEEEEE
T ss_pred EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC----cEEEecCCcccCC
Confidence 443 7788887532 23445667788899999999999988877756889999998632211 2233444455666
Q ss_pred EEecCCcccCCCcEEEEEEcC-----------CeEEEEEcCCc
Q 008041 253 RCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNI 284 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~ 284 (579)
..|+ |+|++|++++.+ +.|++||+.++
T Consensus 222 ~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 222 PHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred eEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 7787 999999988876 46888887654
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=5.5e-20 Score=181.25 Aligned_cols=238 Identities=9% Similarity=0.048 Sum_probs=168.6
Q ss_pred EEEEccCCCEEEEEeC-CCcEEEEECCCCeE-EEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg~~lasg~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++|+|||+++++++. ++.|.+||..+++. ...+..+..+... +.|.+. +.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~s~d---------g~ 96 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD------------------VDITPD---------DQ 96 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC------------------EEECTT---------SS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc------------------eEECCC---------CC
Confidence 5699999997777665 88999999999887 5555433322222 334332 66
Q ss_pred EEEEEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEeCCCCcee----eEeecC
Q 008041 88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLL----GKFRAS 158 (579)
Q Consensus 88 ~l~~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~-v~iwd~~~~~~~----~~~~~~ 158 (579)
+++++..++ .|.+||+.+++.+..+. +...+.+++|+|+|++++++ ..++. |.+|++.....+ ......
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence 677555553 89999999999876653 34567999999999866555 55588 999998754332 112233
Q ss_pred CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
...+.+++|+|+|+++++++ +.|++||+.+++. +..+..+ ..+..++|+|+|+++++++..++.|.+||+.++
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 45689999999999665544 7999999999888 7777644 567889999999988777656788999999887
Q ss_pred ccccceeeeeeecC----ce---eEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCCce
Q 008041 233 KKQSASCVLAMEHP----AV---FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 285 (579)
+.. .+...... .. ....+.|+ |+|++|++++. ++.|.+||+.+..
T Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence 642 11111111 11 11235676 99999877765 6699999987643
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.3e-19 Score=179.17 Aligned_cols=239 Identities=11% Similarity=0.126 Sum_probs=163.4
Q ss_pred EEEEccCCCEEEEEeCC-CcEEEEECC--CCeEE--EEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 10 LTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fspdg~~lasg~~d-g~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+++|+|+|++|++++.+ +.|.+|++. +++.. ..+..+. ....+.|.+.
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~d-------- 94 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-------------------SLTHISTDHQ-------- 94 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-------------------CCSEEEECTT--------
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-------------------CCcEEEEcCC--------
Confidence 45999999999998876 999999997 55533 3332211 2334555443
Q ss_pred CCcEEEEEEC-CCeEEEEEcc---CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cceee----E
Q 008041 85 GSSLLVLGTG-GGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG----K 154 (579)
Q Consensus 85 ~~~~l~~~~~-~g~i~iwd~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~-~~~~~----~ 154 (579)
+..+++++. ++.|.+||+. +.+....+ . ....+.+++|+|+|+++++++ .++.|++||+.+ ++... .
T Consensus 95 -g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 171 (343)
T 1ri6_A 95 -GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE 171 (343)
T ss_dssp -SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred -CCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence 565666554 7889999994 33444333 3 334689999999999888887 899999999987 65432 2
Q ss_pred eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEee----cC--CCCEEEEEEecCCCEEEEEecC
Q 008041 155 FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 155 ~~~-~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~--~~~--~~~~~----~h--~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
+.. ....+.+++|+|+|+++++++ +.|.+|++.. ++. ...+. ++ ...+..++|+|+|+++++++..
T Consensus 172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence 232 234788999999999765543 8999999953 432 22222 11 2356789999999988866657
Q ss_pred CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEc--CCce
Q 008041 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG--QNIE 285 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~ 285 (579)
++.|.+|++...... ...+........ ...+.|+ |+|++|++++ .++.|.+|++ .+++
T Consensus 252 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 252 ASLITVFSVSEDGSV-LSKEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp TTEEEEEEECTTSCC-EEEEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCEEEEEEEcCCCCc-eEEeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 899999999842111 112333333333 5567777 9999998888 5899999954 4553
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=1.7e-20 Score=213.42 Aligned_cols=267 Identities=11% Similarity=-0.025 Sum_probs=185.8
Q ss_pred cEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--------
Q 008041 87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-------- 157 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------- 157 (579)
.++++++.+|.+.+|.+.. +.....+ ..|. .+...+|+|||++++++ .++.|++||+... .+..+..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~ 290 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED 290 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence 4556667778888887654 3233233 3344 46677999999998887 5899999998443 3335544
Q ss_pred ---CCCCeeEEEEc-cCCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-CEEEEEEecCCCEEEEEecCCCeEE-EEEcC
Q 008041 158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD 230 (579)
Q Consensus 158 ---~~~~v~~l~~~-p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~~d~~i~-vwd~~ 230 (579)
|...+.+++|+ |||+.++++. +.|++|+..+++.. .+..|.. .+..+.|+ ||+.+++++ .++.+. +|++.
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~ 367 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR 367 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence 23468999999 9999998887 99999999887644 4667777 89999999 999999887 577888 89988
Q ss_pred CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCeeEEeeeccCCccccccc
Q 008041 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (579)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (579)
.++.. .+..+...+..+.|+ |||++|++++.++.|++||+.+++...........+... .++|+++
T Consensus 368 ~~~~~------~l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~-~~SpDG~-- 433 (1045)
T 1k32_A 368 TGKAE------KFEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF-TISDNSR-- 433 (1045)
T ss_dssp TCCEE------ECCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE-EECTTSC--
T ss_pred CCCce------EecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce-EECCCCC--
Confidence 76532 222334455677787 999999999999999999999887654332211111111 2688888
Q ss_pred chhhhhccccc--e-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008041 311 TAAIFAAKLQD--I-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (579)
Q Consensus 311 ~~~i~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (579)
.++.++.++ . ....+..+.+.+-. .. ....+..|...+..++|+|||++| +.++.++..+.|+.
T Consensus 434 --~la~~~~~~~~~~~~~~~~~i~l~d~~-~g-~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 434 --FIAYGFPLKHGETDGYVMQAIHVYDME-GR-KIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR 500 (1045)
T ss_dssp --EEEEEEEECSSTTCSCCEEEEEEEETT-TT-EEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred --eEEEEecCccccccCCCCCeEEEEECC-CC-cEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence 666655432 0 00112344444322 12 245666788788999999999999 77777777777765
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=6e-20 Score=208.98 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=181.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEee-ecccccccccCCcE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~ 88 (579)
+.+|||||++|+++. ++.|.+||....... .+..+..... ..+ ......+..+.|. |. +..
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~-~~~------~~~~~~v~~~~~S~pd---------G~~ 310 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESP-EDR------IISIPSKFAEDFSPLD---------GDL 310 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBC-CSE------EEECGGGGEEEEEECG---------GGC
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccccc-ccc------cccccccceeeecCCC---------CCE
Confidence 459999999999885 899999999554443 4443211000 000 0012245677787 54 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCC-CEEEEEEccCCCEEEEEeCCCcEE-EEeCCCCceeeEeecCCCCeeEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+++++ ++.|++|+..+++... + ..|.. .+.+++|+ ||+.+++++.++.+. +||+..++... +..|...+.+++
T Consensus 311 la~~~-~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~ 385 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMG 385 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEE
T ss_pred EEEEE-cCEEEEEcCCCCceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeE
Confidence 67766 8899999999887643 3 46777 89999999 999999999888898 99988776544 447778999999
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC---------CeEEEEEcCCCccc
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ 235 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d---------~~i~vwd~~~~~~~ 235 (579)
|+|||+.|++++ +.|++||+.+++....+.+|...+.+++|+|||++|++++..+ +.|++||+.+++.
T Consensus 386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~- 464 (1045)
T 1k32_A 386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI- 464 (1045)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-
T ss_pred ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-
Confidence 999999999887 7999999999988877778999999999999999998876322 4899999988652
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
..+..+........|+ |||++|++++.++...+|+.....
T Consensus 465 -----~~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 465 -----FAATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp -----EECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSC
T ss_pred -----EEeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhccc
Confidence 2233333444556777 999999999998888888765443
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=7.1e-20 Score=176.70 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=164.3
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
+.| .+++|+|||++|++++ ++.|.+||+.+ ++.......+. ...+.++.|.+.
T Consensus 42 ~~v--~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spd------ 95 (297)
T 2ojh_A 42 ELF--EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-----------------TICNNDHGISPD------ 95 (297)
T ss_dssp SCC--EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-----------------CCBCSCCEECTT------
T ss_pred cce--EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-----------------cccccceEECCC------
Confidence 456 4559999999999987 78999999998 77665443321 123344555543
Q ss_pred ccCCcEEEEEEC--CCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCC-CCceeeEee
Q 008041 83 KLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPL-TGSLLGKFR 156 (579)
Q Consensus 83 ~~~~~~l~~~~~--~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~-~~~~~~~~~ 156 (579)
+..+++++. ++. |..|+..+++.. .+ . +...+.+++|+|++++++ +++.|+.+++|++. .+.....+.
T Consensus 96 ---g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 96 ---GALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ---SSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ---CCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 677888883 344 555555555532 33 2 233599999999999876 77789999999853 233445566
Q ss_pred cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------C
Q 008041 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------R 222 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d----------~ 222 (579)
.+...+.+++|+|+|+.++.++ +.+++|++. .+..+..+..|...+..+.|+|+|++|++++..+ +
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 6778999999999999877654 688888876 5556777888888899999999999998877421 5
Q ss_pred eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
.|++||+.+++.. .+.....+...+..+.|+ |++++|++++.+.
T Consensus 250 ~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred EEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence 6999999887643 333333333344556666 9999998887753
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=9.9e-20 Score=180.59 Aligned_cols=238 Identities=11% Similarity=0.093 Sum_probs=174.5
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE-
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL- 89 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l- 89 (579)
+++++++.++++++.+++|.+||..+++....+..+.. .....+.|.+. +..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~d---------g~~~~ 58 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPD---------NRTAY 58 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTT---------SSEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCC---------CCEEE
Confidence 37899999999999999999999999998877753220 01223344332 4544
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCC-----CCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCce-
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL- 151 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~- 151 (579)
+++..++.|.+||+.+++....+...+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++.
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 445567899999999998876654333 2237889999999999998865 8999999988543
Q ss_pred --eeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCC------------------------------
Q 008041 152 --LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP------------------------------ 199 (579)
Q Consensus 152 --~~~~~~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~------------------------------ 199 (579)
+..+.. ...+.+++|+|+|+ ++++++.|++||..+++.+..+..+.
T Consensus 139 ~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 139 KPVRTFPM-PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp CCSEEEEC-CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred ceeeeccC-CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 334443 34688999999999 66677779999999988776664331
Q ss_pred --------------------------------------CCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 200 --------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 200 --------------------------------------~~v~~l~~s~-~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
..+..++|+| ++++++++ ++.|.+||+.+++..
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~----- 288 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI----- 288 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE-----
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE-----
Confidence 1345667789 99988876 679999999887633
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..+..... ...+.|+ |+|++|++++.++.|++||..+++.+..+
T Consensus 289 ~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 289 KAANLDHT-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEEECSSC-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCC-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 22222222 3456676 99999988888999999999998876543
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=8.7e-19 Score=173.94 Aligned_cols=242 Identities=11% Similarity=0.111 Sum_probs=160.3
Q ss_pred EEEEccCCCEEEEEeC---CCcEEEEECCCCeE--EEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 10 LTSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fspdg~~lasg~~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.++|||||+ |++++. ++.|.+||+.++.. +..+..+...+ ..+.|.+.
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p------------------~~~a~spd-------- 96 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP------------------AYVAVDEA-------- 96 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC------------------SEEEEETT--------
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC------------------EEEEECCC--------
Confidence 359999999 555543 68999999987764 22222222222 33444432
Q ss_pred CCcEEEEEE-CCCeEEEEEcc-CCe--EEEEecC-C-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCce
Q 008041 85 GSSLLVLGT-GGGDVLALAVS-AGQ--LKWRLSD-C-------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSL 151 (579)
Q Consensus 85 ~~~~l~~~~-~~g~i~iwd~~-~~~--~~~~~~~-~-------h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~-~~~~ 151 (579)
+.++++++ .++.|.+|++. .+. .+..+.. + +...+.+++|+|+|+.+++...++.|++||+. +++.
T Consensus 97 -g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 97 -RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred -CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 67677777 67899999996 333 2222211 1 22358999999999966666678899999998 5543
Q ss_pred ee--EeecCC-CCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEeecCC------CCEEEEEEecCCCEEE
Q 008041 152 LG--KFRAST-KGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVL 215 (579)
Q Consensus 152 ~~--~~~~~~-~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~--~~~--~~~~~~h~------~~v~~l~~s~~~~~l~ 215 (579)
.. .+..+. ..+..++|+|||+++++++ +.|.+|++.. ++. +..+.... ..+..++|+|||++|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 32 223322 3678999999999776654 7999999874 543 33333332 3488899999999886
Q ss_pred EEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEE--EcCCcee
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW--YGQNIEE 286 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw--d~~~~~~ 286 (579)
+++..++.|.+|++..... ...+............+.|+ |||++|++++. ++.|.+| |.++++.
T Consensus 256 v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGH--LTLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEETTTEEEEEEECGGGC--EEEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEeCCCCEEEEEEECCCCc--EEEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 6655789999999974321 11333333333344567777 99999988876 4899999 4555654
No 146
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=9e-20 Score=200.36 Aligned_cols=281 Identities=7% Similarity=-0.005 Sum_probs=193.9
Q ss_pred ccceEEeeecccccccccCCcEEEEEEC-CC-----eEEEEEccCCeEEEEecCCCC-----------------------
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP----------------------- 117 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g-----~i~iwd~~~~~~~~~~~~~h~----------------------- 117 (579)
.+..+.|.+. +..|++++. +| .|++||+.+++....+ ..+.
T Consensus 38 ~~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 38 TLMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------C
T ss_pred CCCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhcc
Confidence 3556677664 778888888 88 8999999999875444 2222
Q ss_pred -CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008041 118 -GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (579)
Q Consensus 118 -~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~ 193 (579)
..|.+++|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||+.|+.++ +.|++||+.+++...
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence 23789999999999999876 999999998873 4455667778899999999999999888 899999999987665
Q ss_pred EeecCCCC----------------EEEEEEecCCCEEEEEecCCC---------------------------------eE
Q 008041 194 KFSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YI 224 (579)
Q Consensus 194 ~~~~h~~~----------------v~~l~~s~~~~~l~s~~~~d~---------------------------------~i 224 (579)
....+... +..+.|+|||++|++++. |+ .|
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 44444432 477999999999988863 44 78
Q ss_pred EEEEcCC-CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-----CCeEEEEEcCCceeecccCCeeEE--
Q 008041 225 ALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL-- 296 (579)
Q Consensus 225 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~-- 296 (579)
.+||+.+ ++.. .+.....+...+..+.| |||++|++++. ++.|++||..+++...........
T Consensus 266 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 266 GVISPAEQAQTQ---WIDLGKEQDIYLARVNW------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV 336 (741)
T ss_dssp EEECSSTTCCCE---EECCCSCSSEEEEEEEE------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCceE---EecCCCCcceEEEEEEe------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence 8899887 6532 11111112233333333 58898887764 568999999988754332211100
Q ss_pred -eeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeecccccee--
Q 008041 297 -SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK-- 372 (579)
Q Consensus 297 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~-- 372 (579)
......|+++++ .++++..++. ..++...-. .. ...+..|...+..+ .|||||+.+.++++.++
T Consensus 337 ~~~~~~~~spdg~----~~~~~~~~g~-----~~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 337 PLHNSLRFLDDGS----ILWSSERTGF-----QHLYRIDSK--GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp CCCSCCEECTTSC----EEEEECTTSS-----CEEEEECSS--SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred CcCCceEECCCCe----EEEEecCCCc-----cEEEEEcCC--CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence 001223677766 5666666542 233433311 12 45667787778887 59999998756676666
Q ss_pred cccceeee
Q 008041 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
.+++|.+.
T Consensus 405 ~~~l~~~~ 412 (741)
T 2ecf_A 405 ESQIYAVP 412 (741)
T ss_dssp CBEEEEEE
T ss_pred eEEEEEEE
Confidence 78899874
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=4.4e-18 Score=168.82 Aligned_cols=233 Identities=12% Similarity=0.081 Sum_probs=154.6
Q ss_pred CcEEEEEEC---CCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCc--eeeEee
Q 008041 86 SSLLVLGTG---GGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL-TGS--LLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~---~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~-~~~--~~~~~~ 156 (579)
+. +++++. ++.|++|++.+++. +... ..+...+..++|+|+|+++++++ .++.|.+||+. ++. .+..+.
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~ 128 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ 128 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence 55 555444 57899999988764 2222 34667789999999999988887 78999999985 333 233332
Q ss_pred cC---------CCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCeee--EEeecCC-CCEEEEEEecCCCEEEEEecCC
Q 008041 157 AS---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGHP-GAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 157 ~~---------~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-~~~~~--~~~~~h~-~~v~~l~~s~~~~~l~s~~~~d 221 (579)
.. ...+.+++|+|+|+++++.. +.|++|++. +++.. ..+..+. ..+..++|+|||+++++++..+
T Consensus 129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS 208 (347)
T ss_dssp CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence 21 12488999999999555554 799999998 55432 2223222 3678899999999888776678
Q ss_pred CeEEEEEcCC--CccccceeeeeeecCc------eeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceeecccCC
Q 008041 222 RYIALWRTDG--VKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKA 292 (579)
Q Consensus 222 ~~i~vwd~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 292 (579)
+.|.+|++.. ++.. ......... .....+.|+ |||++|+++ ..++.|.+|++.....+.
T Consensus 209 ~~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~---- 276 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT---- 276 (347)
T ss_dssp TEEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred CEEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence 9999999875 3211 111221111 335567777 999988554 558999999975211100
Q ss_pred eeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008041 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372 (579)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~ 372 (579)
. ...+..+...+..++|+|||++|.+++..++
T Consensus 277 ---~---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 277 ---L---------------------------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp ---E---------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred ---E---------------------------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 0 0011123335678899999998845555568
Q ss_pred cccceeee
Q 008041 373 SKRGRYVQ 380 (579)
Q Consensus 373 ~~~~w~~~ 380 (579)
.+.+|++.
T Consensus 309 ~v~v~~~d 316 (347)
T 3hfq_A 309 NATLYARD 316 (347)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 89999763
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.3e-19 Score=184.93 Aligned_cols=209 Identities=12% Similarity=0.042 Sum_probs=151.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
+++++++.++++++.|+ ++||+............+. .....+.+. ..-+....+.++.|.+. +.+|+
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~v~~l~~spd---------g~~la 108 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP--NKIVDKVQG-LLVPMKFPIHHLALSCD---------NLTLS 108 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT--TCEEECCCC-EEECCSSCEEEEEECTT---------SCEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc--ccccccCcc-ccccCCCcccEEEEcCC---------CCEEE
Confidence 39999999999999888 8998764221100000000 000000000 00112345778888775 56677
Q ss_pred ----EEECCCeEEEEEccCC--------eE--EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008041 91 ----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 91 ----~~~~~g~i~iwd~~~~--------~~--~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~ 155 (579)
+|+.|+.|++||+.++ +. ......+|...|++++|+|+ +.+|++++.||+|++||++++..+...
T Consensus 109 v~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 109 ACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 6777899999999765 11 12445679999999999997 789999999999999999998777777
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-------CCEEEEEEecCCCEEEEEecCCC----
Q 008041 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVGER---- 222 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~s~~~~~l~s~~~~d~---- 222 (579)
.+|...|++++|+|+|++|++|+ |.|++||.+ ++....+..|. ..|.++.|++++.++++.+..||
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~ 267 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET 267 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence 77888999999999999999998 899999998 55555555442 37999999999988876554554
Q ss_pred --eEEEEEcCCCc
Q 008041 223 --YIALWRTDGVK 233 (579)
Q Consensus 223 --~i~vwd~~~~~ 233 (579)
.+++|++...+
T Consensus 268 ~~~v~i~~l~~~~ 280 (434)
T 2oit_A 268 SPDVVMALLPKKE 280 (434)
T ss_dssp CCEEEEEECCCTT
T ss_pred CCceEEEEeccCC
Confidence 38999998753
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=7.8e-19 Score=173.10 Aligned_cols=240 Identities=10% Similarity=0.030 Sum_probs=173.8
Q ss_pred EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|||++++ +++.++.|.+||..+++....+....... .......+.|.+. +..
T Consensus 38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d---------g~~ 95 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD---------GKT 95 (337)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT---------SSE
T ss_pred ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC---------CCE
Confidence 449999998765 45567899999999999877665211000 0011234444432 566
Q ss_pred EEEEE------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 89 LVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
++++. .++.|.+||+.+++.+..+.. ...+.+++|+|+|++++++ ++.|++||+.+++....+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred EEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence 77775 578999999999988766532 4567889999999988887 6889999999998887776
Q ss_pred cCCCCeeEEEEccCCCEEEEEC---C-----------------------eEEEEECCCCeee-EEeecCCCCEEEEEEec
Q 008041 157 ASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFMTFSD 209 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~---~-----------------------~i~vwd~~~~~~~-~~~~~h~~~v~~l~~s~ 209 (579)
.+.. ...+.|+|+|+.++.++ + .|.+||+.+++.. ..+..+...+.+++|+|
T Consensus 172 ~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 250 (337)
T 1pby_B 172 IQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp STTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred cccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC
Confidence 5441 11237899998776544 2 4789999998764 33456667788999999
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
+|++++++ ++.|.+||+.+++.. ..+.... ....+.|+ |+|++|++++.++.|++||+.+++.+..
T Consensus 251 dg~~l~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 251 AKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp TSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCCEEEEe---CCeEEEEECCCCcCc-----ceecCCC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence 99998876 589999999887533 2222222 23456676 9999999998999999999999877654
Q ss_pred c
Q 008041 290 T 290 (579)
Q Consensus 290 ~ 290 (579)
+
T Consensus 317 ~ 317 (337)
T 1pby_B 317 V 317 (337)
T ss_dssp E
T ss_pred E
Confidence 3
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=4.1e-18 Score=169.23 Aligned_cols=233 Identities=9% Similarity=0.091 Sum_probs=172.6
Q ss_pred EEEEccCCCEEEEE-eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~lasg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+|++++.+ ..++.|.+||..+++....+..+...... .........+.|.+. +..
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~d---------g~~ 154 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE---------EVRPLQPRELVADDA---------TNT 154 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS---------SCCCCEEEEEEEETT---------TTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc---------ccCCCCCceEEECCC---------CCE
Confidence 34999999966655 45799999999999988777543211000 000011234555543 555
Q ss_pred EEEEE--CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCe
Q 008041 89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (579)
Q Consensus 89 l~~~~--~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v 162 (579)
++++. .++.|.+||+.+++.+..+. .+...+.+++|+|+|+++++++.++.|.+||+.+++....+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 66665 47889999999999886663 3555688999999999999999999999999999998887764 44568
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
.+++|+|+|+.+++++ +.|.+||..+++.+..+..+. ...+.|+|+|+++++++..++.|.+||..+++..
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---- 307 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---- 307 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence 8899999999777665 799999999999888776543 2569999999987777657899999999887633
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
..+.... ....+.|+ |+|++|+++..++
T Consensus 308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK 335 (353)
T ss_dssp -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence 2333333 34566777 9999888877654
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=200.68 Aligned_cols=328 Identities=10% Similarity=0.031 Sum_probs=195.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|+|||++++++ .|+.|++||+.+++....+..+... ...+.++.|.|. ++.|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpD---------g~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPD---------RQFV 74 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTT---------SSEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCC---------CCeE
Confidence 45999999766654 6999999999999987766533221 011334455443 7778
Q ss_pred EEEEC---------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCC
Q 008041 90 VLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST 159 (579)
Q Consensus 90 ~~~~~---------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~ 159 (579)
++++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. |+.|++||+.+++..... .++.
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 88776 688999999999873111 1235688999999999999885 789999999888765432 2222
Q ss_pred CCe-----------------eEEEEccCCCEEEEEC-C-----------------------------------eEEEEEC
Q 008041 160 KGI-----------------SCMAVSSDGKMLATAA-G-----------------------------------QLKTFNC 186 (579)
Q Consensus 160 ~~v-----------------~~l~~~p~g~~l~~~~-~-----------------------------------~i~vwd~ 186 (579)
..+ .+++|+|||+.|++++ . .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 222 4899999999999875 1 7889999
Q ss_pred CCCeee--------EEeecCCCCEEEEEEecCCCEEEEEecC-C--CeEEEEE----cCCCccccceeeee--eecCcee
Q 008041 187 SDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA--MEHPAVF 249 (579)
Q Consensus 187 ~~~~~~--------~~~~~h~~~v~~l~~s~~~~~l~s~~~~-d--~~i~vwd----~~~~~~~~~~~~~~--~~~~~~~ 249 (579)
.+++.. ..+.+|...+..++|+||++.+++.... + ..|.+|| +.+++... +.. ...+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~---~~~~~~~~~~~~ 308 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK---TQEHIEESRTGW 308 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG---GGEEEEECSSSC
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE---EEecccccCCce
Confidence 988653 1234688889999999998776664321 2 2488899 66665331 111 0122222
Q ss_pred EE-----eEEecCCcccCCCcEEEE--EEcCC--eEEEEEcCCceeecccCCeeEEeeeccCCcccccccchhhhhcccc
Q 008041 250 MD-----CRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (579)
Q Consensus 250 ~~-----~~~~~~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 320 (579)
+. ...|+ |||+.++. ...+| .|++||+.+++.. .+......+.... +. +++ .|+..+.+
T Consensus 309 ~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~-~~-d~~----~i~~~~~~ 376 (719)
T 1z68_A 309 AGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIF-RV-TQD----SLFYSSNE 376 (719)
T ss_dssp SSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEE-EE-CSS----EEEEEESC
T ss_pred EccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEE-EE-eCC----EEEEEEec
Confidence 22 45676 99986654 44555 5777777665422 1211111111111 12 333 33333222
Q ss_pred ceecCCceEEEEEeCCCCCceeEEEe----cCCCCcEEEeecCCcceeeccccce--ecccceeee
Q 008041 321 DIVKPASVHTFVAYGLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYVQ 380 (579)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d--~~~~~w~~~ 380 (579)
+........++......-....+.+. +|...+..+.|||||++++++++.+ ..+++|++.
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 00000122333332100000112222 2555678899999999885555544 345667663
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1e-17 Score=167.24 Aligned_cols=239 Identities=14% Similarity=0.124 Sum_probs=157.8
Q ss_pred EEEccCCCEEEEEeCC----CcEEEEECCC--CeEEEE--eccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 11 TSFSPALDYFAICSGD----ARIKIWDTLK--GQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 11 ~~fspdg~~lasg~~d----g~i~vwd~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++|||||++|++++.+ +.|.+|++.. |+.... ...+. .....+.+ +
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~------------------~~p~~~~~---d----- 108 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG------------------ADPCYLTT---N----- 108 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS------------------SCEEEEEE---C-----
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC------------------CCcEEEEE---C-----
Confidence 4999999999999875 7999998765 544322 11111 11122222 1
Q ss_pred ccCCcEEEEEE-CCCeEEEEEccCCeEEEEe-----c--------CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008041 83 KLGSSLLVLGT-GGGDVLALAVSAGQLKWRL-----S--------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (579)
Q Consensus 83 ~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~-----~--------~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~ 147 (579)
+..+++++ .++.|.+|++.....+... . ..+...+.+++|+|+|+++++++ .++.|++|++.
T Consensus 109 ---g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 109 ---GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp ---SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence 55566665 6788999999754322111 0 11233468999999999776655 58899999887
Q ss_pred CCce------e------eE-eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEee---cCCCCEEEEE
Q 008041 148 TGSL------L------GK-FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFMT 206 (579)
Q Consensus 148 ~~~~------~------~~-~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~--~~~~~---~h~~~v~~l~ 206 (579)
.... + .. ...+...+.+++|+|||+++++++ +.|.+|++.+++. +..+. .+......++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence 5431 1 11 222345788999999999776655 7999999987754 33332 3335578999
Q ss_pred EecCCCEEEEEecC-CCeEEEEEcCC--CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEE--
Q 008041 207 FSDNGKYVLSSAVG-ERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY-- 280 (579)
Q Consensus 207 ~s~~~~~l~s~~~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd-- 280 (579)
|+|||++|+++... ++.|.+|++.. ++.. .+..... ......+.|+ |+|++|++++ .++.|.+|+
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEEE
Confidence 99999999877755 58999999963 3321 2223333 3344566777 9999999888 578999965
Q ss_pred cCCceee
Q 008041 281 GQNIEEL 287 (579)
Q Consensus 281 ~~~~~~~ 287 (579)
..+++..
T Consensus 337 ~~~g~~~ 343 (361)
T 3scy_A 337 QATGLLT 343 (361)
T ss_dssp TTTCCEE
T ss_pred CCCCcEe
Confidence 4466543
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.1e-18 Score=186.19 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=160.0
Q ss_pred CcccceEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+| .+++|+|||++||+++. ||+++||++.++...+ +..+. ..+.... |.|
T Consensus 22 ~~~--~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~------------------~sp------ 74 (582)
T 3o4h_A 22 VEK--YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPH------------------YGV------ 74 (582)
T ss_dssp SCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEEC------------------TTC------
T ss_pred cch--heeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eeccccccccccc------------------CCC------
Confidence 467 55699999999999887 9999999997776654 33222 2333333 332
Q ss_pred cccCCcEEEEEEC---CCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE
Q 008041 82 RKLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 82 ~~~~~~~l~~~~~---~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
..++++++. +....+|.+.. +... .+.. ...+...+|+|+|+. +++.+.++.+.+||+.+++....
T Consensus 75 ----d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 75 ----GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp ----SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred ----CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 234555554 34455555433 2222 3322 223456688888864 33444455566999998876655
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEE
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL 226 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~--~i~v 226 (579)
...+. .+++|+|||+.+++++ +.|++||+.+++.. .+..|...+..++|+|||++|+++. .++ .|++
T Consensus 148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~ 222 (582)
T 3o4h_A 148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVT 222 (582)
T ss_dssp EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEE
T ss_pred ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEE
Confidence 54333 8899999999999765 46999999888754 6788889999999999999999655 688 8999
Q ss_pred EEcCCCccccceeeeeeecCceeEEeEE--------ecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 227 WRTDGVKKQSASCVLAMEHPAVFMDCRC--------IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
||+.+++.. .+..+...+.... |+ |||..+++++.||++++|++ ++...
T Consensus 223 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 223 VDPRDGSVE------DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp ECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred EcCCCCcEE------EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 999887532 2222222222222 66 99988999999999999999 66554
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=3e-18 Score=187.18 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=175.7
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccCccccccccccccccccccccccceEEeeeccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 78 (579)
+.+..+ +|||||++||++ .|+.|++||+.+ ++.......+...+.. ..+....+ .....++.|.|.
T Consensus 121 ~~~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~---g~~~~~ee-~~~~~~~~~SpD-- 191 (706)
T 2z3z_A 121 EETASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY---GQAVHQRE-FGIEKGTFWSPK-- 191 (706)
T ss_dssp TCCTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE---SSCCGGGC-TTCCCSEEECTT--
T ss_pred ccccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc---ccchhhhh-cCCCceEEECCC--
Confidence 345444 999999999995 589999999998 7765543322221100 00000001 112345666654
Q ss_pred ccccccCCcEEEEEE---------------------------------CCCeEEEEEccCCeEEEEec-CCCCCCEEEEE
Q 008041 79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS 124 (579)
Q Consensus 79 ~~~~~~~~~~l~~~~---------------------------------~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~ 124 (579)
+..|++++ .++.|++||+.+++...... ..|...+.+++
T Consensus 192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 66777776 34669999999988654332 25777899999
Q ss_pred EccCCCEEEEEeCCC-----cEEEEeCCCCceeeEee-c-CCC---CeeEEEEcc--CCCEEEEEC--CeEEEEECC-CC
Q 008041 125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH 189 (579)
Q Consensus 125 ~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~p--~g~~l~~~~--~~i~vwd~~-~~ 189 (579)
|+|||+++++++.++ .|++||+.+++....+. . +.. .+.+++|+| ||++++++. +.+++|+++ ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 999999999888776 89999999984443332 2 222 246789999 999988887 777888775 66
Q ss_pred eeeEEeecCCCCEEE-EEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCC
Q 008041 190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (579)
Q Consensus 190 ~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (579)
+.+..+..|...+.. +.|+|+|+.|+.++..++ .|..||+.+++.. .+.+.. .+..+.|+ |||
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~-~~~~~~~s-----pdg 412 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPES-GMHRTQLS-----PDG 412 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSS-SEEEEEEC-----TTS
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCC-ceEEEEEC-----CCC
Confidence 777888888888877 799999998887775555 6777777765422 222333 34567777 999
Q ss_pred cEEEEEEcC----CeEEEEEcCCce
Q 008041 265 LYVLAISET----GVCYIWYGQNIE 285 (579)
Q Consensus 265 ~~l~~~~~d----g~i~iwd~~~~~ 285 (579)
++++....+ +.|++||..+++
T Consensus 413 ~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 413 SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CEEEEEecCCCCCcEEEEEECCCCe
Confidence 998877553 569999998876
No 155
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4.6e-18 Score=171.38 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=159.9
Q ss_pred EEEccCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 11 TSFSPALDYFAICSG-DAR--IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 11 ~~fspdg~~lasg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+|||||++|++++. +|. |.+||..+++......++........|+++ +.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~ 93 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD 93 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence 479999999999987 664 888899999887655444333333344444 77
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE--EccCCCEEEEE----------------------eCCCcEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE 143 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------~~d~~v~i 143 (579)
.|+.++.++.|++||+.+++..... ..+...+.... ++|+++.++.. ..+..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 8999999999999999998865433 34555454443 48999987743 23467999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC-C-------eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCC
Q 008041 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK 212 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~-~-------~i~vwd~~~~~~~~~~~~h~--~~v~~l~~s~~~~ 212 (579)
||+.+++... +..+...+..++|+| ||+.++.+. + .|+++|...++ ...+..+. ..+..+.|+|||+
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCC
Confidence 9999886544 444566789999999 999887755 1 68888876654 34444444 3577899999999
Q ss_pred EEEEEecCCC----eEEEEEcCCCccccceeeeeeecCcee---EEeEEecCCcccCCCcEEEEE---------EcCCeE
Q 008041 213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC 276 (579)
Q Consensus 213 ~l~s~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~---------~~dg~i 276 (579)
.|+..+..++ .|++||+.+++.. .+......... .....|+ |||+.|+.. ..+..|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence 7766543322 3999999987643 22222110000 0112344 899888754 345689
Q ss_pred EEEEcCCcee
Q 008041 277 YIWYGQNIEE 286 (579)
Q Consensus 277 ~iwd~~~~~~ 286 (579)
++||+.+++.
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999887653
No 156
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=2.3e-18 Score=188.58 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=165.2
Q ss_pred eEEEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccC---ccccccccccccccccccccccceEEeeec
Q 008041 9 ILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADI---ASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (579)
Q Consensus 9 l~~~fspdg~~lasg~~d---------g~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 76 (579)
.+++|||||++||+++.+ +.|.+||+.+++. ..+... ...+....|+++
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd------------------ 124 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK------------------ 124 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS------------------
T ss_pred ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC------------------
Confidence 455999999999999864 7788999998876 333321 112334444444
Q ss_pred ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC------------------EEEEEEccCCCEEEEEeCC
Q 008041 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSAGAD 138 (579)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~------------------V~~l~~~~~~~~l~s~~~d 138 (579)
+..|+.++. +.|++||+.+++..... ..+... +.+++|+|||++|++++.|
T Consensus 125 ---------G~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 125 ---------GQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp ---------TTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ---------CCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 667887776 79999999998876444 333333 3789999999999988755
Q ss_pred C----------------------------------cEEEEeCCCCceeeEeecC------CCCeeEEEEccCCCEEEEEC
Q 008041 139 G----------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 139 ~----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~g~~l~~~~ 178 (579)
+ .|++||+.+++....+..+ ...+.+++|+|||+++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence 3 7999999988765666544 55789999999999887653
Q ss_pred ------CeEEEEECCCCeeeEEeec-CCCCE----EEEEEecCCCEEEEE-ecCCC------eEEEEE-cCCCcccccee
Q 008041 179 ------GQLKTFNCSDHKKMQKFSG-HPGAV----RFMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKKQSASC 239 (579)
Q Consensus 179 ------~~i~vwd~~~~~~~~~~~~-h~~~v----~~l~~s~~~~~l~s~-~~~d~------~i~vwd-~~~~~~~~~~~ 239 (579)
..|++||+.+++....+.. +...+ ..+.|+|||+.|+.. +..++ .|.+|| ...+... +
T Consensus 274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~ 350 (723)
T 1xfd_A 274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---N 350 (723)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---C
T ss_pred cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---c
Confidence 4799999999987666543 33444 378999999977764 44677 566677 3333300 0
Q ss_pred eeeee-cCceeEEeEEecCCcccCCCcEEEEEEcC---CeEEEEEcCC
Q 008041 240 VLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 283 (579)
...+. +.........|+ |||+.|+..+.+ +.+++|++..
T Consensus 351 ~~~l~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 351 IQSITSGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCBSCCSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeEeecCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11222 223333445777 999999877665 7899999764
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=2e-17 Score=165.38 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=161.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccC-ccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
..++|+|||++|++++.+ .|.+|++. +|+........ ...+..+.++++ +
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g 94 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------T 94 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------C
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------C
Confidence 455999999999999888 99999997 78765433211 012333444443 5
Q ss_pred cE--EEEEE-------------CCCeEEEEEcc-CCeEEEEec---CCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeC
Q 008041 87 SL--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDP 146 (579)
Q Consensus 87 ~~--l~~~~-------------~~g~i~iwd~~-~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~ 146 (579)
.. ++++. .+|.+.+|++. .++....+. ..+...+.+++|+|||++++++.. ++.|++||+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 53 33442 68899999997 465433221 135568999999999998887764 679999999
Q ss_pred C-CCcee--eEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCeee---EEee-------cCCC------
Q 008041 147 L-TGSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------ 200 (579)
Q Consensus 147 ~-~~~~~--~~~~--~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~~~~---~~~~-------~h~~------ 200 (579)
. +++.. ..+. .+...+..++|+|||+++++++ +.|.+|+++ +++.. ..+. +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 8 67653 2343 2356789999999999887765 789999765 56542 1222 1222
Q ss_pred CEEEEE-EecCCCEEEEEecCCC-----eEEEEEcC-CCccccceeee-eeecCceeEEeEEecCCcccC---CCcEEEE
Q 008041 201 AVRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLA 269 (579)
Q Consensus 201 ~v~~l~-~s~~~~~l~s~~~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ 269 (579)
.+..++ |+|||++|+++...++ .|.+|++. +++.. .+. ...........+.++ | ||++|++
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v 326 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAI 326 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEE
Confidence 478999 9999999887653333 89999996 33321 111 122222222344555 8 8999999
Q ss_pred EEcC-CeEEEEEcCCc
Q 008041 270 ISET-GVCYIWYGQNI 284 (579)
Q Consensus 270 ~~~d-g~i~iwd~~~~ 284 (579)
++.+ +.|.+|+.+..
T Consensus 327 ~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 327 TDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSSCEEEEEEEETT
T ss_pred EEcCCCeEEEEEEchh
Confidence 9874 89999998655
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2.3e-17 Score=180.81 Aligned_cols=247 Identities=11% Similarity=0.016 Sum_probs=169.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|+|||++++++ ||.|++||+.++++...+.++........ .....|.|. +..
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~Spd---------g~~ 75 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHS-------------INDYSISPD---------GQF 75 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSC-------------CCEEEECTT---------SSE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhccc-------------ccceEECCC---------CCE
Confidence 345999999999986 89999999999998877766543221111 111333332 777
Q ss_pred EEEEECC---------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecC
Q 008041 89 LVLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (579)
Q Consensus 89 l~~~~~~---------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~ 158 (579)
|++++.+ +.+++||+.+++.. . +..|...+...+|+|||+.|+.+ .|+.|++||+.+++..+. ..++
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~-l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-C-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-E-cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 8888875 66789999999875 2 35677889999999999999888 578999999988875542 2222
Q ss_pred CCCe-----------------eEEEEccCCCEEEEEC---C-----------------------------------eEEE
Q 008041 159 TKGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKT 183 (579)
Q Consensus 159 ~~~v-----------------~~l~~~p~g~~l~~~~---~-----------------------------------~i~v 183 (579)
...+ .++.|||||+.|+.+. + .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 2222 3589999999998763 1 5889
Q ss_pred EECCC---Ce--eeEEee------cCCCCEEEEEEecCCCEEEEEecC---CCeEEEEEcCCCc----cccceeeeeeec
Q 008041 184 FNCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEH 245 (579)
Q Consensus 184 wd~~~---~~--~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~~---d~~i~vwd~~~~~----~~~~~~~~~~~~ 245 (579)
||+.+ ++ ....+. +|...+..++|+|||+.++..... +..|.+||+.+++ ......+....+
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 99998 73 233343 377889999999999966655322 2379999998876 211111111222
Q ss_pred Ccee----EEeEEecCCcccCCCcEEE-EEEc-CC--eEEEEEcCCceee
Q 008041 246 PAVF----MDCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEEL 287 (579)
Q Consensus 246 ~~~~----~~~~~~~~~~~~~~~~~l~-~~~~-dg--~i~iwd~~~~~~~ 287 (579)
.... .....|+ |||+.|+ ..+. +| .|++||..+++..
T Consensus 313 ~~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp SSCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred CceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 2211 1234566 9999877 6654 44 7888898876544
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.7e-16 Score=158.38 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=149.6
Q ss_pred EccCCCEEEEEeC----CCcEEEEEC--CCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 13 FSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 13 fspdg~~lasg~~----dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
..+...+++.|+. ++.|.+|++ .+++.......+...+. .+.|.+. +
T Consensus 9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~------------------~l~~spd---------g 61 (361)
T 3scy_A 9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS------------------YLIPSAD---------G 61 (361)
T ss_dssp GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC------------------SEEECTT---------S
T ss_pred hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc------------------eEEECCC---------C
Confidence 3455556777754 567999865 56665432221222222 3334332 6
Q ss_pred cEEEEEECC----CeEEEEEccC--CeEE--EEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEe--
Q 008041 87 SLLVLGTGG----GDVLALAVSA--GQLK--WRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKF-- 155 (579)
Q Consensus 87 ~~l~~~~~~----g~i~iwd~~~--~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~-- 155 (579)
.+|++++.+ |.|.+|++.. ++.. ... ..+......+++ +++++++++ .++.|.+|++.....+..+
T Consensus 62 ~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 138 (361)
T 3scy_A 62 KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD 138 (361)
T ss_dssp SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE
T ss_pred CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce
Confidence 778888875 7899999876 4432 222 234556778888 888877776 6889999999754332211
Q ss_pred --e--c--------CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------e-------EEeecCCCCEEEEEE
Q 008041 156 --R--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------M-------QKFSGHPGAVRFMTF 207 (579)
Q Consensus 156 --~--~--------~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~------~-------~~~~~h~~~v~~l~~ 207 (579)
. + +...+.+++|+|+|+++++++ +.|++|++..... + .....+...+..++|
T Consensus 139 ~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (361)
T 3scy_A 139 VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF 218 (361)
T ss_dssp EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE
T ss_pred eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE
Confidence 1 1 122458899999999776654 7999998875431 1 112234456789999
Q ss_pred ecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC--CeEEEEEcC
Q 008041 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ 282 (579)
Q Consensus 208 s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~ 282 (579)
+|||+++++++..++.|.+|++.+++......+............+.|+ |||++|++++.+ +.|.+|++.
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEc
Confidence 9999988887756899999999866432111111111112233567777 999999777664 899999875
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.6e-17 Score=169.53 Aligned_cols=197 Identities=11% Similarity=0.065 Sum_probs=142.1
Q ss_pred CcccceEEEEccCCCEEE----EEeCCCcEEEEECCCC--------eE---EEEeccCcccccccccccccccccccccc
Q 008041 4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QV---QTEFADIASTETTSLYGNRLEREHLSVDY 68 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~la----sg~~dg~i~vwd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (579)
++| .+++|+|+|++|| +|+.|+.|+|||+.++ +. ...+. +| ...+
T Consensus 93 ~~v--~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~h-~~~V 152 (434)
T 2oit_A 93 FPI--HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-----------------DA-GGMV 152 (434)
T ss_dssp SCE--EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-----------------SG-GGSE
T ss_pred Ccc--cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-----------------CC-CCce
Confidence 357 5569999999999 7888999999998754 11 22222 22 2356
Q ss_pred ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008041 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~ 148 (579)
.++.|.+.. +.++++++.||.|++||+.++...... .+|...|++++|+|+|++|++|+.||+|++||++
T Consensus 153 ~~v~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~- 222 (434)
T 2oit_A 153 IDMKWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT- 222 (434)
T ss_dssp EEEEECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred EEEEECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence 677777653 678999999999999999998765444 4688999999999999999999999999999997
Q ss_pred CceeeEeecCC-------CCeeEEEEccCCCEEEEEC---C------eEEEEECCCCe-----eeEEee-------cCCC
Q 008041 149 GSLLGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHK-----KMQKFS-------GHPG 200 (579)
Q Consensus 149 ~~~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~---~------~i~vwd~~~~~-----~~~~~~-------~h~~ 200 (579)
++....+..+. ..+.+++|++++.++++.+ | .+++|+++..+ ....+. +...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 302 (434)
T 2oit_A 223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ 302 (434)
T ss_dssp CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence 66666555432 3799999999988876543 2 38999998642 112221 2222
Q ss_pred CEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 201 ~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
+-..+.+.++.+++++++.....|.+....
T Consensus 303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 303 HHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred cceeeehhccCCEEEEecCCCCceeEEEec
Confidence 333344447778877777666666666643
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=4.3e-16 Score=155.64 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=130.5
Q ss_pred CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCE--EEEEe-------------CCCcEEEEeCC-C
Q 008041 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~~-------------~d~~v~iwd~~-~ 148 (579)
+.++++++.+ .|.+|++. +++..........+.+.+++|+|+|++ +++++ .++.+.+|++. +
T Consensus 51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~ 129 (365)
T 1jof_A 51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET 129 (365)
T ss_dssp SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence 6778888877 99999997 777643221101123556899999995 44553 68999999997 4
Q ss_pred CceeeEee----cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeee--EEee--cCCCCEEEEEEecCCCEEEE
Q 008041 149 GSLLGKFR----ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 149 ~~~~~~~~----~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~-~~~~~--~~~~--~h~~~v~~l~~s~~~~~l~s 216 (579)
++....+. .+...+.+++|+|||+++++++ +.|++||+. +++.. ..+. .|...+..++|+|||+++++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence 66554443 2456789999999999888764 699999998 67643 3333 24567899999999999988
Q ss_pred EecCCCeEEEEEcCC--Ccccc-ceeeeeeecC----ce------eEEeEE-ecCCcccCCCcEEEEEEcC-C-----eE
Q 008041 217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP----AV------FMDCRC-IDNGGVDDAGLYVLAISET-G-----VC 276 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~----~~------~~~~~~-~~~~~~~~~~~~l~~~~~d-g-----~i 276 (579)
++..++.|.+|++.. ++... ...+..+... .. ....+. |+ |||++|++++.+ + .|
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence 775578999998763 33210 0011111111 10 345566 77 999998877653 3 89
Q ss_pred EEEEcC
Q 008041 277 YIWYGQ 282 (579)
Q Consensus 277 ~iwd~~ 282 (579)
.+|++.
T Consensus 285 ~v~~~~ 290 (365)
T 1jof_A 285 AGFKLR 290 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999975
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=1.6e-16 Score=157.43 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=112.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCC-----
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST----- 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~----- 159 (579)
+.++++++.++.|++||+.+++.+..+..+....+..++|+|+|++++ ++..++.|++||+.+++.+..+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 677889999999999999999987666433323678999999998765 45578999999999998887766432
Q ss_pred -CCeeEEEEccCCCEEEEEC--------------CeEEEEECCCCe---eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008041 160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 160 -~~v~~l~~~p~g~~l~~~~--------------~~i~vwd~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d 221 (579)
..+.+++|+|+|+++++++ +.|.+||+.+++ .+..+. +...+.+++|+|+|+ +++++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--- 165 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--- 165 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---
Confidence 2378999999999998876 789999998854 334444 344688999999999 55543
Q ss_pred CeEEEEEcCCCcc
Q 008041 222 RYIALWRTDGVKK 234 (579)
Q Consensus 222 ~~i~vwd~~~~~~ 234 (579)
+.|.+||+.+++.
T Consensus 166 ~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 166 PDIYKMDVKTGKY 178 (349)
T ss_dssp SSEEEECTTTCCE
T ss_pred CcEEEEeCCCCce
Confidence 3399999988763
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=3.3e-15 Score=143.67 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=163.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++|+|+++++...++.|.+||.. ++....+...... .++.. ....+++.+.+ +.
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----------~~~~~-~p~~i~~~~~~--------g~- 90 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQLL-YPNRVAVVRNS--------GD- 90 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTCBS-SEEEEEEETTT--------TE-
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----------ccccc-CceEEEEEcCC--------Ce-
Confidence 455999999988888889999999987 6666555321100 01111 12334442221 33
Q ss_pred EEEEE-C-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--cCCCCeeE
Q 008041 89 LVLGT-G-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISC 164 (579)
Q Consensus 89 l~~~~-~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~v~~ 164 (579)
++++. . ++.|.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|++||. .++.+..+. .+...+.+
T Consensus 91 l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~ 168 (286)
T 1q7f_A 91 IIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNG 168 (286)
T ss_dssp EEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEE
T ss_pred EEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEE
Confidence 44444 3 78899999 5666665554445567999999999987777777899999995 566666664 33457899
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCcccccee
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASC 239 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~-~i~vwd~~~~~~~~~~~ 239 (579)
++++|+|+++++.. +.|++||. +++.+..+..+ ...+..++++++|+.+++.. .++ .|.+|+..... . .
T Consensus 169 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g~~-~---~ 242 (286)
T 1q7f_A 169 VVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDGQL-I---S 242 (286)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTSCE-E---E
T ss_pred EEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCCCE-E---E
Confidence 99999999877765 79999997 45566666533 36789999999998777765 565 99999964332 1 1
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.+...........+.++ |+|+++++ +.|++|++|+....
T Consensus 243 ~~~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEcccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence 12221222224456676 89986666 67999999987543
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=2e-16 Score=159.65 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=153.1
Q ss_pred EEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 11 TSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 11 ~~fspdg~~lasg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
++|||||++|+.+... ..|.+||..+++......+..... ....|.+. +.
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~------------------~~~~~spd---------g~ 93 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNT------------------FGGFISTD---------ER 93 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCT------------------TTCEECTT---------SS
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCcc------------------ccceECCC---------CC
Confidence 3899999999887643 468888999887654322211111 11334332 77
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEE-------------------EEEccCCCEEEEE-----eCCCcEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GADGMVCE 143 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----~~d~~v~i 143 (579)
.|+.++.++.|++||+.+++..... ..+...... +.|+|+++.++.+ ..+..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 8999999999999999988764333 333332222 3467777765543 35678999
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC--------CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCC
Q 008041 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGK 212 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~ 212 (579)
||+.+++..... .+...+..+.|+| +|+.++... ..|++||+.+++. ..+..+ ...+..+.|+|+|+
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSS
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCC
Confidence 999888765544 4566889999999 788666653 2688999876643 333333 23578899999999
Q ss_pred EEEEEecCC----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccC-CCcEEEEEE----------------
Q 008041 213 YVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS---------------- 271 (579)
Q Consensus 213 ~l~s~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~---------------- 271 (579)
+|+.++..+ +.|++||+.+++.. .+... +. .. ..|+ | +|+++++++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~--~~--~~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENE---EVMVM--PP--CS-HLMS-----NFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEE---EEEEC--CS--EE-EEEE-----CSSSSEEEEEECCC----------CCC
T ss_pred EEEEEecCCCCccceEEEEECCCCCeE---EeeeC--CC--CC-CCcc-----CCCCceEEEecCCcceeeccccccccC
Confidence 877765322 44999999877533 22211 11 12 5565 8 999888765
Q ss_pred cCCeEEEEEcCCce
Q 008041 272 ETGVCYIWYGQNIE 285 (579)
Q Consensus 272 ~dg~i~iwd~~~~~ 285 (579)
.++.|++||..+++
T Consensus 318 ~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 318 NDPFLYVLNTKAKS 331 (396)
T ss_dssp CCCEEEEEETTTTB
T ss_pred CCCcEEEEecccCc
Confidence 24689999987664
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=175.44 Aligned_cols=273 Identities=13% Similarity=0.059 Sum_probs=175.3
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCC---CEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeeEee
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~~~---------d~~v~iwd~~~~~~~~~~~ 156 (579)
++..+.+|.|++||+.+++....+ .+|.. .+.+++|+|||++|++++. ++.|++||+.+++.+....
T Consensus 29 ~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 29 YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 555567999999999999876443 33432 4899999999999998876 7899999999887631111
Q ss_pred cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCE-----------------EEEEEecCCCEEEEE
Q 008041 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV-----------------RFMTFSDNGKYVLSS 217 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~-~~h~~~v-----------------~~l~~s~~~~~l~s~ 217 (579)
....+.+++|+|||+.|+.+. +.|++||+.+++..... .++...| .++.|+|||++|+++
T Consensus 108 -l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 108 -LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA 186 (719)
T ss_dssp -CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred -cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence 124688999999999999888 99999999988765322 2333322 489999999999988
Q ss_pred ecCCC---------------------------------eEEEEEcCCCccccceee---eeeecCceeEEeEEecCCccc
Q 008041 218 AVGER---------------------------------YIALWRTDGVKKQSASCV---LAMEHPAVFMDCRCIDNGGVD 261 (579)
Q Consensus 218 ~~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 261 (579)
+..++ .|++||+.+++......+ ..+..+...+..+.|+
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S----- 261 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV----- 261 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-----
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-----
Confidence 74221 788999987653100000 1122345566777787
Q ss_pred CCCcEEEEEEcC----CeEEEEE----cCCceeecccC----CeeEEee----eccCCcccccccchhhhh--cccccee
Q 008041 262 DAGLYVLAISET----GVCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKSQKSATAAIFA--AKLQDIV 323 (579)
Q Consensus 262 ~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~i~~--~~~~~~~ 323 (579)
||++.+++.... ..|.+|| ..+++...... .....+. ....++++++ .++. +..++
T Consensus 262 pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~g-- 335 (719)
T 1z68_A 262 TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI----SYYKIFSDKDG-- 335 (719)
T ss_dssp SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS----CEEEEEECTTS--
T ss_pred CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC----eEEEEEEccCC--
Confidence 998877775433 2588899 87776554331 1111111 0123567766 3332 22222
Q ss_pred cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc----eecccceeee
Q 008041 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ 380 (579)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~----d~~~~~w~~~ 380 (579)
...++...-.. .....+..+...+..+.++ ||..+.++++. ++..++|.+.
T Consensus 336 ---~~~l~~~~~~~--~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 336 ---YKHIHYIKDTV--ENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp ---CEEEEEESSCS--TTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ---ceEEEEEECCC--CceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 22333332111 1133455566667788878 88877455554 4778889874
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.7e-15 Score=146.53 Aligned_cols=239 Identities=8% Similarity=0.087 Sum_probs=167.0
Q ss_pred CcccceEEEEccCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEecc-Ccccccccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFAD-IASTETTSLYGNR 58 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~d------------------------g~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~ 58 (579)
+.+ ..++|+|+|+++++...+ ++|.+||..+++....+.. +-..+
T Consensus 24 ~~v--~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p-------- 93 (329)
T 3fvz_A 24 GQV--SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP-------- 93 (329)
T ss_dssp SCE--EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE--------
T ss_pred CCc--eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc--------
Confidence 456 445999999999888777 4799999998988765531 11111
Q ss_pred ccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEec--------CCCCCCEEEEEEcc-C
Q 008041 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-H 128 (579)
Q Consensus 59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~--------~~h~~~V~~l~~~~-~ 128 (579)
..+++.+. +.++++.+.++.|++||..... .+..+- .++.....+++|+| +
T Consensus 94 ----------~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 94 ----------HGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp ----------EEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT
T ss_pred ----------eEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC
Confidence 22333321 6677777778999999986552 333332 24555799999999 7
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCceeeEeecCC----------CCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEE
Q 008041 129 GSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 129 ~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~ 194 (579)
|..+++.+ .++.|++|| .+++.+..+.... ..+..++++|+ |.++++.. +.|++||..+++.+.+
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 87777775 699999999 5787777764322 24899999998 66666655 7999999998988888
Q ss_pred ee--cCCCCEEEEEEecCCCEEEEEe------cCCCeEEEEEcCCCccccceeeeeee---cCceeEEeEEecCCcccCC
Q 008041 195 FS--GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLAME---HPAVFMDCRCIDNGGVDDA 263 (579)
Q Consensus 195 ~~--~h~~~v~~l~~s~~~~~l~s~~------~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 263 (579)
+. .+...+..++|+| +..+.+.+ ..+..|++|+..+++.. ..+. ........++++ |+
T Consensus 234 ~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~~p~~ia~~-----~d 302 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----DVFKPVRKHFDMPHDIVAS-----ED 302 (329)
T ss_dssp ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----EEECCSSSCCSSEEEEEEC-----TT
T ss_pred EeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----EEEcCCCCccCCeeEEEEC-----CC
Confidence 74 4566788999999 43333222 13458999999887643 2221 223334566777 99
Q ss_pred CcEEEEEEcCCeEEEEEcCC
Q 008041 264 GLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~ 283 (579)
|..+++...+++|++|++..
T Consensus 303 G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCc
Confidence 98778888899999998753
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=1.9e-16 Score=168.68 Aligned_cols=265 Identities=10% Similarity=-0.031 Sum_probs=172.4
Q ss_pred cccceEEeeecccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcE
Q 008041 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMV 141 (579)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v 141 (579)
.++..+.+.+. +..|++++. +|.+.||++.+++.. ++...+...+.++.|+|| +.+++++. +...
T Consensus 22 ~~~~~~~~~~D---------G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 22 VEKYSLQGVVD---------GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp SCEEEEEEEET---------TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred cchheeecCCC---------CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 34555555553 677888776 999999999777664 444444468999999999 77777765 4555
Q ss_pred EEEeCCC---CceeeEeecCCCCeeEEEEccCCCE--EEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008041 142 CEIDPLT---GSLLGKFRASTKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 142 ~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~g~~--l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
.+|.+.. +... .+... ..+...+|+|+|+. ++++. +.+.+||+.+++.......+ . .++.|+|||++++
T Consensus 91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la 165 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIA 165 (582)
T ss_dssp EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEE
T ss_pred EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEE
Confidence 5654432 3332 33322 23456788888864 44444 66779999998765544433 3 7899999999999
Q ss_pred EEecCC----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC--eEEEEEcCCceeecc
Q 008041 216 SSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRN 289 (579)
Q Consensus 216 s~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~ 289 (579)
+++ .| +.|++||+.+++.. .+..+........|+ |||++|+++..+| .|++||+.+++.. .
T Consensus 166 ~~~-~~~~~~~~i~~~d~~~g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 166 GLG-FFGGGRVSLFTSNLSSGGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEE-EEETTEEEEEEEETTTCCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred EEE-EcCCCCeEEEEEcCCCCCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 776 35 67999999887643 233444455777887 9999999888888 8999999988765 3
Q ss_pred cCCeeEEeeeccC--------CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008041 290 TKATKILSSSEDV--------NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (579)
Q Consensus 290 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (579)
.......+.. .. ++++++ .+++++.++.++++. . |. .. ..+...+.+++|+ ||
T Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~spdg~----~~~~~~~~g~~~l~~-----~-g~----~~---~~~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 233 LELPSKDFSS-YRPTAITWLGYLPDGR----LAVVARREGRSAVFI-----D-GE----RV---EAPQGNHGRVVLW-RG 293 (582)
T ss_dssp CCCSCSHHHH-HCCSEEEEEEECTTSC----EEEEEEETTEEEEEE-----T-TE----EE---CCCSSEEEEEEEE-TT
T ss_pred ccCCCcChhh-hhhccccceeEcCCCc----EEEEEEcCCcEEEEE-----E-CC----ee---ccCCCceEEEEec-CC
Confidence 2222111111 12 567764 677777766443322 1 21 11 1334567899999 99
Q ss_pred ceeeccccceec---ccceee
Q 008041 362 VLLPMSQSLLKS---KRGRYV 379 (579)
Q Consensus 362 ~~l~~s~s~d~~---~~~w~~ 379 (579)
+++ ++++.+.+ +++|+.
T Consensus 294 ~~l-~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 294 KLV-TSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEE-EEEEETTEEEEEEEETT
T ss_pred EEE-EEEcCCCCCCeEEEEcC
Confidence 998 66665533 445544
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=5.3e-15 Score=160.12 Aligned_cols=249 Identities=9% Similarity=0.037 Sum_probs=159.5
Q ss_pred CcccceEEEEccCCCEEEEE--eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeee-ccccc
Q 008041 4 SNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKK 80 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~ 80 (579)
..|+ .++|++++-++++. +.+++..||....+.....+..+...+..... ........|.. ++
T Consensus 24 ~~~~--~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~SPD--- 89 (662)
T 3azo_A 24 GRPA--CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVF---------EYSGFPWAGVPRPA--- 89 (662)
T ss_dssp SCCE--EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGG---------GTCCCCEEEECCSS---
T ss_pred Cccc--eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccccccc---------ccCCccceeeeecC---
Confidence 4453 44899887777776 55888999986544444555544322221000 00111233441 22
Q ss_pred ccccCCcE-EEEEEC-CCeEEEEEcc--C-CeEEEEecCC----CCCCEEEEEEccCCCEEEEEeCC----------CcE
Q 008041 81 KRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GMV 141 (579)
Q Consensus 81 ~~~~~~~~-l~~~~~-~g~i~iwd~~--~-~~~~~~~~~~----h~~~V~~l~~~~~~~~l~s~~~d----------~~v 141 (579)
+.. |+.++. +..|++|++. + ++.. .+... |...+.+++|+|||+.|++++.| ..|
T Consensus 90 -----g~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 90 -----GGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp -----SSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred -----CCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 454 554443 5667777776 3 4432 33221 66788999999999999988877 589
Q ss_pred EEEeCCC------CceeeEee-cCCCCeeEEEEccCCCEEEEEC----------CeEEEEECC-CC---eeeEEeecCCC
Q 008041 142 CEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA----------GQLKTFNCS-DH---KKMQKFSGHPG 200 (579)
Q Consensus 142 ~iwd~~~------~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~-~~---~~~~~~~~h~~ 200 (579)
++||+.+ ++. ..+. .+...+..++|+|||+.|+.++ ..|++||+. ++ +......+|..
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 9999987 544 4444 5556788899999999998765 279999999 57 44444455678
Q ss_pred CEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeeeeeecCcee--------EEeEEecCCcccCCCcEEEEE
Q 008041 201 AVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 201 ~v~~l~~s~~~~~l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~ 270 (579)
.+..+.|+|||++++++. .++ .|.+||+.+++.. . ...++... ...+.++ |++++++++
T Consensus 243 ~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~---~--l~~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~~ 311 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT---Q--LCRREEEFAGPLWTPGMRWFAPL-----ANGLIAVVH 311 (662)
T ss_dssp CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE---E--SSCCSSBSSCCCCSTTCCSEEEC-----TTSCEEEEE
T ss_pred eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee---e--cccccccccCccccccCceEeEe-----CCCEEEEEE
Confidence 899999999999666554 677 5666666555422 1 11111111 2345555 889999999
Q ss_pred EcCCeEEEE--EcCCce
Q 008041 271 SETGVCYIW--YGQNIE 285 (579)
Q Consensus 271 ~~dg~i~iw--d~~~~~ 285 (579)
+. |.+++| |..+++
T Consensus 312 ~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 312 GK-GAAVLGILDPESGE 327 (662)
T ss_dssp BS-SSCEEEEEETTTTE
T ss_pred Ec-CccEEEEEECCCCc
Confidence 88 999998 555554
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=2.3e-14 Score=140.98 Aligned_cols=242 Identities=12% Similarity=0.107 Sum_probs=162.6
Q ss_pred CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 1 ~~~~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
|++..|..+ +|+|++..++..+.++.++.| .+.....+..+... ...+.|.+.
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~---- 55 (333)
T 2dg1_A 3 MSQQDLPTL--FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQ------------------LEGLNFDRQ---- 55 (333)
T ss_dssp ---CCCCBC--CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCC------------------EEEEEECTT----
T ss_pred cccccccee--eecCCccceeEEeecccCccc---ccceeEEEeccCcc------------------ccCcEECCC----
Confidence 456678555 999999888877888899999 34444444332222 234455431
Q ss_pred ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEee
Q 008041 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~ 156 (579)
+.++++++.++.|.+||..+++..... ..+...+.+++|+|+|+.+++...+ +.|.+||..++.....+.
T Consensus 56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 666677788899999999988765333 2456789999999999877777666 689999988776543332
Q ss_pred --cCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 157 --~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
.+...+.+++++|+|+++++.. +.|+.||..+++.. .+..+...+..++|+|++++++.+...++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 2345789999999999888765 35666666555433 333334557899999999877665546789999
Q ss_pred EEcCCC-ccccc---eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 227 WRTDGV-KKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 227 wd~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
|++... ..... ....... .......++++ ++|+..++...++.|.+||.+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFT-GHEGPDSCCID-----SDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEB-----TTCCEEEEEETTTEEEEECTT
T ss_pred EEecCCCcCcccccceEEEecC-CCCCCCceEEC-----CCCCEEEEEcCCCEEEEECCC
Confidence 999642 21100 0011111 11345567776 889887777778999999873
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=2.4e-14 Score=144.08 Aligned_cols=218 Identities=13% Similarity=0.093 Sum_probs=152.9
Q ss_pred EEEECCCCeEEEEeccCcccccc-----ccccccccccccccccceEEeeecccccccccCCcEEEEEEC-CC--eEEEE
Q 008041 30 KIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG--DVLAL 101 (579)
Q Consensus 30 ~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g--~i~iw 101 (579)
..+|..+|.....+..+...... ..|+++ +..|+.++. +| .|.+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~ 65 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLL 65 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEE
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEE
Confidence 34577788888777765533332 334443 677777776 66 49999
Q ss_pred EccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE--EccCCCEEEEE--
Q 008041 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA-- 177 (579)
Q Consensus 102 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~--~~p~g~~l~~~-- 177 (579)
|+.+++... +..++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++|+|+.++..
T Consensus 66 d~~~g~~~~-lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 144 (388)
T 3pe7_A 66 DLNTQVATQ-LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEI 144 (388)
T ss_dssp ETTTCEEEE-CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred eCCCCceEE-eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccc
Confidence 999988763 4455665666778999999999999999999999999988777766665554444 48999998742
Q ss_pred --------------------C--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecC-----CCeEEEEEc
Q 008041 178 --------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRT 229 (579)
Q Consensus 178 --------------------~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~~-----d~~i~vwd~ 229 (579)
. +.|++||+.+++.. .+..+...+..+.|+| ||+.++.++.. +..|.+++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 1 57999999998654 4455677899999999 99988877632 236888887
Q ss_pred CCCccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEEc-CC----eEEEEEcCCcee
Q 008041 230 DGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEE 286 (579)
Q Consensus 230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~ 286 (579)
...... .+ ..+. ...+....|+ |||+.|+..+. ++ .|++||+.+++.
T Consensus 224 ~~~~~~---~l--~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 224 DGTNMR---KV--KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TSCCCE---ES--CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCceE---Ee--eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 765422 11 1122 1344556677 99998766554 22 399999987753
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=3.4e-14 Score=141.36 Aligned_cols=291 Identities=11% Similarity=0.034 Sum_probs=184.1
Q ss_pred cCCCEEEEEe------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 15 pdg~~lasg~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++++++.... .|+.|.+||..+++.+..+.....+ .+.|+++ +.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~ 63 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK 63 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence 4677666554 3789999999999988777543322 3444444 677
Q ss_pred EEEEEC----------CCeEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCce
Q 008041 89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (579)
Q Consensus 89 l~~~~~----------~g~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~ 151 (579)
++++.. ++.|.+||+.+++.+.++... +......++|+|||++++++.. +++|.+||+.+++.
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 777763 567999999998887665321 2345678999999999998864 68999999999988
Q ss_pred eeE-eecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCC-CeeeEE------eecCCCCEEEEEEecCCCEEEEEecC
Q 008041 152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 ~~~-~~~~~~~v~~l~~~p~g-~~l~~~~--~~i~vwd~~~-~~~~~~------~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
+.. +... ....+.+.|++ ..+++.+ |.+.+|+... ++.... +..+..++ .+.+++++..++..+ .
T Consensus 144 ~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~ 219 (361)
T 2oiz_A 144 VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y 219 (361)
T ss_dssp EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence 877 5532 22335677876 3444433 8888888865 554422 22222332 344578887777776 6
Q ss_pred CCeEEEEEcCCCccccceeeeeee-------cCc---eeEEeEEecCCcccCCCcEEEEEEc-----------CCeEEEE
Q 008041 221 ERYIALWRTDGVKKQSASCVLAME-------HPA---VFMDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIW 279 (579)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iw 279 (579)
++.+.++|+...... ...... ... .....+.++ |+++.++++.. .+.|.+|
T Consensus 220 ~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 220 YGNVYSADFSGDEVK---VDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp TSEEEEEECSSSSCE---EEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CCeEEEEEecCCCce---ecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 899999999765422 111110 000 001124555 89888877654 3489999
Q ss_pred EcCCceeecccCCeeEEeeeccCCcccccccchhhhhccccceecCCceEEEEEeCCCCC--ceeEEEecCCCCcEEEee
Q 008041 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNC 357 (579)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~~~~ 357 (579)
|..+++.+..+.... .... .++++++ .+++++. +.+.. .+ .... .....+..+...-..+++
T Consensus 292 D~~t~~~v~~i~~~~--p~~i-a~spdg~----~l~v~n~-~~v~v-------~D-~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD--ALSM-TIDQQRN----LMLTLDG-GNVNV-------YD-ISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp ETTTTEEEEEEECTT--CCEE-EEETTTT----EEEEECS-SCEEE-------EE-CSSSSCEEEEEETTSCSSEEEEEE
T ss_pred ECCCCcEEEEEecCC--eeEE-EECCCCC----EEEEeCC-CeEEE-------EE-CCCCcceeeEEeccCCCCcEEEEe
Confidence 999998887654333 1211 2577777 6666554 32222 22 2223 444455455556788999
Q ss_pred cCCcc
Q 008041 358 SQDGV 362 (579)
Q Consensus 358 s~dg~ 362 (579)
+|||.
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99986
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=1.2e-14 Score=159.30 Aligned_cols=194 Identities=13% Similarity=0.079 Sum_probs=135.0
Q ss_pred EEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccc
Q 008041 11 TSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (579)
Q Consensus 11 ~~fspdg~~lasg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (579)
.+|||||++|++++.+ +.+.+||+.+++... +..+...+.. ..|.|.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~------------------~~~SPd----- 122 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQW------------------VTWSPV----- 122 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEE------------------EEECSS-----
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCccee------------------eEECCC-----
Confidence 4889999999998875 566799999998653 4333333333 344432
Q ss_pred cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----------------EEEEEccCCCEEEEEeCCC-----
Q 008041 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGADG----- 139 (579)
Q Consensus 82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~~~l~s~~~d~----- 139 (579)
+..|+.+ .+++|++|++.+++.......++...+ .++.|+|||+.|+.++.|.
T Consensus 123 ----G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 123 ----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp ----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred ----CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 6667776 568999999999886544434444433 3489999999998875332
Q ss_pred -------------------------------cEEEEeCCC---Cc--eeeEee------cCCCCeeEEEEccCCCEEEEE
Q 008041 140 -------------------------------MVCEIDPLT---GS--LLGKFR------ASTKGISCMAVSSDGKMLATA 177 (579)
Q Consensus 140 -------------------------------~v~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~p~g~~l~~~ 177 (579)
+|++||+.+ ++ ....+. ++...+..++|+|||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 488899988 73 222333 266789999999999976665
Q ss_pred C------CeEEEEECCCCe----e--eEEe--ecCCCCEE-----EEEEecCCCEEE-EEecCCC--eEEEEEcCCCc
Q 008041 178 A------GQLKTFNCSDHK----K--MQKF--SGHPGAVR-----FMTFSDNGKYVL-SSAVGER--YIALWRTDGVK 233 (579)
Q Consensus 178 ~------~~i~vwd~~~~~----~--~~~~--~~h~~~v~-----~l~~s~~~~~l~-s~~~~d~--~i~vwd~~~~~ 233 (579)
. ..|++||+.+++ + +.++ .+|...|. .+.|+|||+.++ ..+..+| .|++||+.+++
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 3 379999999887 2 2222 45665554 789999999877 6654444 68888888765
No 173
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.5e-13 Score=130.87 Aligned_cols=213 Identities=10% Similarity=0.099 Sum_probs=157.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 15 pdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
..+++|++++.|+.|.+||.++|+.+.++..+. ..+....+.++ +++++ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---------------------------G~ilv--s 53 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---------------------------GEILF--S 53 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---------------------------SCEEE--E
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---------------------------CCEEE--e
Confidence 346799999999999999999999999887543 12222222222 56566 5
Q ss_pred CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecC------CCCeeEEE
Q 008041 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAS------TKGISCMA 166 (579)
Q Consensus 94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~------~~~v~~l~ 166 (579)
.++.|+.||. +++.++++..++...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+... ......++
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 6788999999 899998885444457899999999999999887 888888885 78887776521 12455678
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+.++|+++++.. +.|.+||.+ |+.+.++..+ ..+.++.+.++|+.+++++ .++.|..+|..+++.. ....
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~-----w~~~ 203 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV-----RRVN 203 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE-----EEEE
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE-----EEec
Confidence 899999999887 899999988 9999888764 3456778889999888776 5778999999987643 3332
Q ss_pred cC------ceeEEeEEecCCcccCCCcEEEEEE
Q 008041 245 HP------AVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 245 ~~------~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
.. -......... ++|..+++..
T Consensus 204 ~~~~~~~~l~~~~~~~~~-----~~G~i~v~~~ 231 (276)
T 3no2_A 204 ANDIEGVQLFFVAQLFPL-----QNGGLYICNW 231 (276)
T ss_dssp GGGSBSCCCSEEEEEEEC-----TTSCEEEEEE
T ss_pred CCCCCCccccccccceEc-----CCCCEEEEec
Confidence 11 1223444444 7888877764
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=3.4e-13 Score=141.08 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=164.4
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 13 fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
.+|.+.++++...+++|.++|..+++.+.++.... .+..+.|+++ +.+++++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpD---------------------------Gr~lyv~ 214 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVI 214 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCC---------------------------CCEEEEE
Confidence 34545566677778999999999999988775322 1223334443 7889999
Q ss_pred ECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEc----cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------
Q 008041 93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------- 158 (579)
Q Consensus 93 ~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~------- 158 (579)
+.++.|.+||+. +++.+.++..+ .....++|+ |||+++++++ .+++|.++|..+.+.+..+...
T Consensus 215 ~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred cCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence 999999999996 77777666432 347899999 6999987766 5699999999999888876532
Q ss_pred ----CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 159 ----~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
...+..+..++++..++... |.|.++|..+.+.+ ..+ ........+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 12678899999877666553 89999998875432 222 234456788999999999888767899999999
Q ss_pred CCCccccceee-eeeecCceeEEeEEecCCcccCCCcEEEEEE--cCCeEEEEEcCC
Q 008041 230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQN 283 (579)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 283 (579)
.+++......+ ....|+..... ++. |++..+.+.+ .++.|.++|..+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence 98864421111 11223322222 244 7755554444 368999999887
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=1.4e-13 Score=136.93 Aligned_cols=237 Identities=13% Similarity=0.100 Sum_probs=161.3
Q ss_pred EEEEccCCCEEEEEeC----------CCcEEEEECCCCeEEEEeccCc------cccccccccccccccccccccceEEe
Q 008041 10 LTSFSPALDYFAICSG----------DARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 10 ~~~fspdg~~lasg~~----------dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
.++|||||+++++++. ++.|.+||..+++.+.++.... ..+..+.++++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd--------------- 118 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD--------------- 118 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence 4599999999988862 6789999999999888775321 12222333333
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCC-
Q 008041 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT- 148 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~- 148 (579)
+++++++.. ++.|.+||+.+++.+.. +. + .....+.+.|++ ..+++.+.||.+..|++..
T Consensus 119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTA--A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGG--G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEec--C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 777888774 57899999999998876 52 2 233446677876 5688889999999999865
Q ss_pred Cceee------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeec------C----CCCEEEEEEe
Q 008041 149 GSLLG------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG------H----PGAVRFMTFS 208 (579)
Q Consensus 149 ~~~~~------~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~--~~~~~~------h----~~~v~~l~~s 208 (579)
++... .+.....+ ..+.++|++..++..+ +.++++|+..... +..+.- + ......++|+
T Consensus 184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 55442 22222222 2334467777666655 8999999875532 222211 0 0112237899
Q ss_pred cCCCEEEEEec----------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041 209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 209 ~~~~~l~s~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (579)
|+++.++++.. .++.|.+||+.+.+.. ..+..+. ...+.++ |||++|++++. +.|.+
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence 99888877642 1348999999987643 3444444 5666777 99999998887 99999
Q ss_pred EEcCCc--eeeccc
Q 008041 279 WYGQNI--EELRNT 290 (579)
Q Consensus 279 wd~~~~--~~~~~~ 290 (579)
||..++ +.+..+
T Consensus 330 ~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQPEPKLLRTI 343 (361)
T ss_dssp EECSSSSCEEEEEE
T ss_pred EECCCCcceeeEEe
Confidence 999999 877654
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=3.5e-13 Score=146.86 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=159.8
Q ss_pred eEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
-.++|||||++||.++.++ .|++||+.+|+........ .....+.|.+.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------------------~~~~~~~wspD------- 181 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------------------VKFSCMAWTHD------- 181 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------------------ECSCCEEECTT-------
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------------------cccceEEEEeC-------
Confidence 3459999999999876533 8999999999876532110 01234566553
Q ss_pred cCCcEEEEEECCCe----------------EEEEEccCCeEE--EEe-cCCCCCCEEEEEEccCCCEEEEEeC-----CC
Q 008041 84 LGSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DG 139 (579)
Q Consensus 84 ~~~~~l~~~~~~g~----------------i~iwd~~~~~~~--~~~-~~~h~~~V~~l~~~~~~~~l~s~~~-----d~ 139 (579)
+..|+.++.++. |++|++.++... ..+ ...|...+.++.|+|||++|+.++. +.
T Consensus 182 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 --GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp --SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred --CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 667888777655 999999887621 111 1235566889999999999887764 56
Q ss_pred cEEEEeCCC------Cc-eeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe--eeEEeecCCC--CE
Q 008041 140 MVCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AV 202 (579)
Q Consensus 140 ~v~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~--~~~~~~~h~~--~v 202 (579)
.|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+ +.|.+||+.+++ ....+..|.. .+
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 899999976 43 45566666665554 5889998777654 379999998874 2345555544 67
Q ss_pred EEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEE-E---cCCeE
Q 008041 203 RFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVC 276 (579)
Q Consensus 203 ~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~---~dg~i 276 (579)
..+.|++++..+++.. .|+. |.+|++.+++.. ..+..+...+..+.++ |++..++.. + ..+++
T Consensus 339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp EEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEE
T ss_pred EEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEE
Confidence 8899987776666665 5774 566676555422 2233334445555665 788766544 2 25799
Q ss_pred EEEEcCCce
Q 008041 277 YIWYGQNIE 285 (579)
Q Consensus 277 ~iwd~~~~~ 285 (579)
+.||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998876
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=2.2e-13 Score=129.50 Aligned_cols=238 Identities=8% Similarity=-0.050 Sum_probs=155.9
Q ss_pred eEEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~la-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
..++++|+|++++ +.+.++.|.+||..++........... ....+.+.+. +.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------~p~~i~~~~~---------g~ 79 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY------------------QPQGLAVDGA---------GT 79 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCC------------------SCCCEEECTT---------CC
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcC------------------CcceeEECCC---------CC
Confidence 4558999999777 446788999999765543221111101 1223333321 44
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (579)
++++..++.|.+||..++... .+.......+.++++.++|+.+++...++.|.+|+..+.............+.++++
T Consensus 80 -l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 80 -VYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp -EEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred -EEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 455555889999998876543 232233367899999999987777777889999986555433322223346789999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeec
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
+|+|+++++.. +.|.+||............+...+..++++++|..+++.. .++.|.+|+....... .....
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~-----~~~~~ 231 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST-----VLPFT 231 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE-----ECCCC
T ss_pred eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce-----eeccC
Confidence 99999777765 7999999887655433333446788999999997666554 6889999998765322 11111
Q ss_pred CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
.......++++ ++|+.+++...+++|++|+....+.
T Consensus 232 ~~~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 GLNTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp SCSCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence 11334566676 8999888888899999999876554
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=1.8e-13 Score=134.48 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=151.5
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEee---------cCCCCeeEE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM 165 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~---------~~~~~v~~l 165 (579)
+.|.+||..+++.......++...+.+++++|+|+.+++...++.|++||..... .+..+. .+...+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 4799999999998766655566789999999999988888889999999975332 455552 333478999
Q ss_pred EEcc-CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 166 ~~~p-~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h----------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
+++| +|.++++.+ +.|++|| .+++.+..+... -.....++++|++..++++...++.|++|+..+
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 9999 888888873 7999999 567777766422 234789999999444444445789999999986
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEE-------EEcCCeEEEEEcCCceeecccCCeeEEeeeccCCc
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-------ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (579)
++.. ..............+.++ | +..+++ ...+++|++||..+++.+....+
T Consensus 228 G~~~---~~~~~~~~~~~~~~~~~~-----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------ 286 (329)
T 3fvz_A 228 KEFV---REIKHASFGRNVFAISYI-----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------ 286 (329)
T ss_dssp CCEE---EEECCTTTTTCEEEEEEE-----T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------
T ss_pred CcEE---EEEeccccCCCcceeeec-----C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------
Confidence 6532 111112222233345555 6 333332 23344788888776654432110
Q ss_pred ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008041 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (579)
...+......++++|||.++ ++.+.++.|++|++.
T Consensus 287 ----------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 287 ----------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT 321 (329)
T ss_dssp ----------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred ----------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence 01233457889999999777 888888999999874
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.59 E-value=1.1e-13 Score=139.44 Aligned_cols=249 Identities=10% Similarity=0.056 Sum_probs=151.0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccc---ccccccccccccccccceEEeeecccccccccCCc
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT---SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+.|||||++|++++.++.|.+||+.+++....+..+...... +.|... ............|.+. +.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~~spd---------g~ 154 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVGIEILKRDWQPL---------TS 154 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCC---------CS
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--CccccccccccccCCC---------Cc
Confidence 479999999999999999999999988876555433221100 111100 0000000000112111 22
Q ss_pred EEEEE-----ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceeeEe
Q 008041 88 LLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 88 ~l~~~-----~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d------~~v~iwd~~~~~~~~~~ 155 (579)
.++.+ ..+..|++||+.+++..... .+...+..+.|+| +++.++.++.+ ..|.+||+..++.....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 23332 34567999999988765333 4667899999999 78877766543 46889998765543333
Q ss_pred ecC-CCCeeEEEEccCCCEEEEEC-----Ce--EEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEec-------
Q 008041 156 RAS-TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV------- 219 (579)
Q Consensus 156 ~~~-~~~v~~l~~~p~g~~l~~~~-----~~--i~vwd~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~------- 219 (579)
... ...+..++|+|||+.|+.++ .. |++||+.+++...... ... .. +.|+| +|+++++++.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeec
Confidence 321 23578899999999877764 24 9999998886543222 222 33 89999 9998877541
Q ss_pred --------CCCeEEEEEcCCCccccceeeeeeecCce----------eEEeEEecCCcccCCCcEEEEEEc-CCeEEEE-
Q 008041 220 --------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW- 279 (579)
Q Consensus 220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iw- 279 (579)
.+..|++||+.+++.. .+. .+... ......|+ |+|+.|+.++. ++...+|
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~---~l~--~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQ---KLC--KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCC---EEE--ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTTSSCEEEE
T ss_pred cccccccCCCCcEEEEecccCceE---Ecc--CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCCCCceEEE
Confidence 2478999999877533 111 11111 12234565 99998887765 5554444
Q ss_pred -EcCCce
Q 008041 280 -YGQNIE 285 (579)
Q Consensus 280 -d~~~~~ 285 (579)
++.+++
T Consensus 380 ~~~~~~~ 386 (396)
T 3c5m_A 380 ADVPESY 386 (396)
T ss_dssp EECCTTC
T ss_pred EEEcccc
Confidence 554443
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=6.2e-13 Score=128.43 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=152.4
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+|+ +++++..++.|..||..++ ...+..+...+. .+.+.+. +.+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------~l~~~~d---------g~l 82 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQN------------------GHCLNKQ---------GHL 82 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEE------------------EEEECTT---------CCE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcc------------------eeeECCC---------CcE
Confidence 458999998 6777788899999999887 444543332222 3333321 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEec--C-CCCCCEEEEEEccCCCEEEEE----e-------------CCCcEEEEeCCC
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLS--D-CHPGGVSAISFATHGSCIYSA----G-------------ADGMVCEIDPLT 148 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~--~-~h~~~V~~l~~~~~~~~l~s~----~-------------~d~~v~iwd~~~ 148 (579)
+++...++.|.+||..+++...... . .....+.+++++|+|+++++. + ..+.|..++..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 5555556889999998887643221 1 112356789999999987773 2 13467777754
Q ss_pred CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008041 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (579)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~ 222 (579)
++ +..+..+...+..++|+|+|+.+++.. +.|++|++. +++. ...+..+...+..++++++|+.+++. ++
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 44 344455566789999999999986555 799999987 4544 23333345567789999999866554 67
Q ss_pred eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
.|.+|+.. ++. ...+..+.. ...+.|. .|+++.|++++.+ .+.-++.++.+.
T Consensus 238 ~v~~~~~~-g~~-----~~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLTPD-GDE-----LGRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECTT-SCE-----EEEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred eEEEECCC-CCE-----EEEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence 89999986 332 223333333 4555562 1888989888875 455666665543
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.57 E-value=1.6e-12 Score=124.74 Aligned_cols=181 Identities=13% Similarity=0.205 Sum_probs=129.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEec-----CCCCCCEEEEEE-ccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec-
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-----DCHPGGVSAISF-ATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA- 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-----~~h~~~V~~l~~-~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~- 157 (579)
+.++++.+.++.|.+||.. ++.+..+. .+|...+.++++ .++++.+++... ++.|++|| .+++.+..+..
T Consensus 41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~ 118 (286)
T 1q7f_A 41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT 118 (286)
T ss_dssp CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT
T ss_pred CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc
Confidence 5666666788999999987 55544442 134567899999 467765555533 88999999 67777776643
Q ss_pred CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
+...+.+++++|+|+++++.. +.|++||. .++.+..+. ++...+..++++|+|+.+++.. .++.|++|+.....
T Consensus 119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~ 196 (286)
T 1q7f_A 119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAHCVKVFNYEGQY 196 (286)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGTEEEEEETTCCE
T ss_pred cCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CCCEEEEEcCCCCE
Confidence 335789999999999888765 79999996 455666664 4456789999999998666654 68899999975432
Q ss_pred cccceeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCC-eEEEEEc
Q 008041 234 KQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG 281 (579)
Q Consensus 234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~ 281 (579)
+..+... ......++++ ++|+++++...++ .|.+||.
T Consensus 197 ------~~~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 197 ------LRQIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ------EEEESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECT
T ss_pred ------EEEEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECC
Confidence 1222222 1345567776 8998888887776 9999984
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=1.4e-12 Score=128.84 Aligned_cols=213 Identities=10% Similarity=0.081 Sum_probs=137.6
Q ss_pred EEccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 12 ~fspdg~~lasg~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
++ ||+++|... .++.|.+||+.+++... + ..+. ...|.|.
T Consensus 21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~------------------~~~~SpD------ 69 (347)
T 2gop_A 21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENAT------------------MPRISPD------ 69 (347)
T ss_dssp EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCE------------------EEEECTT------
T ss_pred eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCC------------------CeEECCC------
Confidence 56 899888753 25679999999887543 2 1222 3344432
Q ss_pred ccCCcEEEEEECC---C--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-------------------
Q 008041 83 KLGSSLLVLGTGG---G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------- 138 (579)
Q Consensus 83 ~~~~~~l~~~~~~---g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------------------- 138 (579)
+..|+.++.+ + .|++||+.+++..... . +.. +.++.|+|||+.|+.++.+
T Consensus 70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred ---CCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 6667666643 3 3888899888765333 2 223 9999999999998887643
Q ss_pred --------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C--------eEEEEECCCCeeeEEeecCCCC
Q 008041 139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA 201 (579)
Q Consensus 139 --------~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~--------~i~vwd~~~~~~~~~~~~h~~~ 201 (579)
..|++||+.+++.+..+.. . .+..++|+||| +++++. . ...+|.+.+++. ..+..+ ..
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~ 218 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS 218 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence 5799999988877455554 4 78899999999 777663 1 234443335543 444444 55
Q ss_pred EEEEEEecCCCEEEEEecCC-------CeEEEEEcCCCccccceeeeeeecCceeEEe-EEecCCcccCCCcEEEEEEcC
Q 008041 202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 202 v~~l~~s~~~~~l~s~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d 273 (579)
+..+ +|||++|+..+..+ ..|.+|| +++.. .........+.. ..|+ ++ .+++++.+
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-----~l~~~~~~~~~~~~~~s------dg-~~~~~~~~ 282 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-----GILDEVDRGVGQAKIKD------GK-VYFTLFEE 282 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-----ESSTTCCSEEEEEEEET------TE-EEEEEEET
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-----eccccCCcccCCccEEc------Cc-EEEEEecC
Confidence 5554 99999888776322 3677787 33311 112222333442 5553 66 88888999
Q ss_pred CeEEEEEcCC
Q 008041 274 GVCYIWYGQN 283 (579)
Q Consensus 274 g~i~iwd~~~ 283 (579)
|.+++| +.+
T Consensus 283 ~~~~l~-~~~ 291 (347)
T 2gop_A 283 GSVNLY-IWD 291 (347)
T ss_dssp TEEEEE-EES
T ss_pred CcEEEE-EcC
Confidence 999999 763
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=4.3e-12 Score=124.65 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=146.6
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|+|+|++++++..++.|.+||..+++.......+.. .+.++.|.+. +.++
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~~~~i~~~~d---------g~l~ 101 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA------------------NPAAIKIHKD---------GRLF 101 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS------------------SEEEEEECTT---------SCEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCC------------------CcceEEECCC---------CcEE
Confidence 458999999888888899999999988876554322222 2233444332 5555
Q ss_pred EEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecC
Q 008041 90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 90 ~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~ 158 (579)
++...+ +.|.+||..++.....+. ..+...+.++.++|+|+.+++... .+.|..+|..+++... +...
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 555555 589999998877642222 234567999999999987776653 3567777766554433 3233
Q ss_pred CCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE--------eecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 159 ~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~~~~--------~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
...+..++|+|+|+.++.+. +.|++||..+ ++.+.. +.++ ..+..++++++|+.+++.. .++.|.+
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~ 258 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV 258 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence 34678999999998665543 7999999964 333221 1222 4678899999998777665 5789999
Q ss_pred EEcCCCccccceeeeeeecCce------eEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 227 WRTDGVKKQSASCVLAMEHPAV------FMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
||.. ++.. ..+..+.. ....++|+ |++..|++++.+|
T Consensus 259 ~d~~-g~~~-----~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPI-----GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEE-----EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred ECCC-CCEE-----EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence 9984 3321 22222221 34566676 8887777666654
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=1.4e-12 Score=127.89 Aligned_cols=234 Identities=9% Similarity=0.044 Sum_probs=159.7
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
+++ +++.+++...++.|.+||..+++.+.++... ..+ ..+.+.+. + .+++
T Consensus 50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~p------------------~~i~~~~~---------g-~lyv 99 (328)
T 3dsm_A 50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TSP------------------RYIHFLSD---------E-KAYV 99 (328)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SSE------------------EEEEEEET---------T-EEEE
T ss_pred EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CCC------------------cEEEEeCC---------C-eEEE
Confidence 553 3445555556799999999999998877421 111 12333221 4 4566
Q ss_pred EE-CCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 92 ~~-~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+. .++.|.+||+.+++....+..+. ......+++ ++..++.+. .++.|.+||+.+++.+..+... .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~ 176 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS 176 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence 66 78999999999999876553322 114566777 345555555 4889999999999988887653 35678
Q ss_pred EEEccCCCEEEEECC------------eEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 165 l~~~p~g~~l~~~~~------------~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
++++|+|++++++.+ .|.+||..+++....+... ......++|+|++++++++. +.|.+||..+
T Consensus 177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t 253 (328)
T 3dsm_A 177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEA 253 (328)
T ss_dssp CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES---SSEEEEETTC
T ss_pred eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc---cEEEEEECCC
Confidence 999999998777652 6999999999887776532 23678999999999888764 2899999988
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCC-CcEEEEE----EcCCeEEEEEcCCceeeccc
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAI----SETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~----~~dg~i~iwd~~~~~~~~~~ 290 (579)
++.... . ...........+.++ |+ +...++. ..++.|.+||.. ++.+..+
T Consensus 254 ~~~~~~-~--~~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 254 DRVPVR-P--FLEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SSCCSS-C--SBCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred Cceeee-e--eecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 764210 1 111112345566776 74 5555554 468899999988 7766544
No 185
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=1.9e-13 Score=147.89 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=149.0
Q ss_pred EEc--cCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 12 ~fs--pdg~~-lasg~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.|+ |||++ |+.++. +..|.+|+.. + +. ...+..... .........+.|.|.
T Consensus 83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD-------- 140 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE-------- 140 (662)
T ss_dssp EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence 455 99998 887664 5667777765 2 43 233332100 000122334556553
Q ss_pred CCcEEEEEECC----------CeEEEEEccC------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--------c
Q 008041 85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------M 140 (579)
Q Consensus 85 ~~~~l~~~~~~----------g~i~iwd~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--------~ 140 (579)
++.|++++.+ ..|++||+.+ ++.. .+...+...+..++|+|||++|+.++.++ .
T Consensus 141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 6678777766 5799999988 5543 34314556788999999999998877553 7
Q ss_pred EEEEeCC-CC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--C--eEEEEECCCCeeeEEeecCCCC--------EEE
Q 008041 141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF 204 (579)
Q Consensus 141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~--~i~vwd~~~~~~~~~~~~h~~~--------v~~ 204 (579)
|++||+. ++ +.......+...+..++|+|||+++++++ + .|++||+.+++.......+... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444455577899999999999777776 4 7888887777654333333222 567
Q ss_pred EEEecCCCEEEEEecCCCeEEEE--EcCCCccccceeeeeeecCceeEEeE-EecCCcccCCCcEEEEEEcCC--eEEEE
Q 008041 205 MTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCR-CIDNGGVDDAGLYVLAISETG--VCYIW 279 (579)
Q Consensus 205 l~~s~~~~~l~s~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg--~i~iw 279 (579)
++|+|++++++++. . +.+++| |+.+++. ..+..+...+..+ .++ ++...+++++.+. .|++|
T Consensus 299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 299 FAPLANGLIAVVHG-K-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVS-----GTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEECTTSCEEEEEB-S-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEE
T ss_pred EeEeCCCEEEEEEE-c-CccEEEEEECCCCcE------EEecCCCCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEE
Confidence 89999999888876 6 888898 5444432 2333333333433 332 2323333444454 56666
Q ss_pred EcCCcee
Q 008041 280 YGQNIEE 286 (579)
Q Consensus 280 d~~~~~~ 286 (579)
|..+++.
T Consensus 366 d~~~g~~ 372 (662)
T 3azo_A 366 DTVTGRA 372 (662)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 7666653
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.2e-12 Score=140.59 Aligned_cols=193 Identities=9% Similarity=-0.008 Sum_probs=132.7
Q ss_pred CcEEEEEECC-C----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc----------------EEEE
Q 008041 86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM----------------VCEI 144 (579)
Q Consensus 86 ~~~l~~~~~~-g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~----------------v~iw 144 (579)
+..|+.+... | .|++||+.+++........ ..+.+++|+|||+.|+.++.++. |++|
T Consensus 136 g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 213 (710)
T 2xdw_A 136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (710)
T ss_dssp SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence 6667766554 3 7999999999876543322 22678999999999999888766 9999
Q ss_pred eCCCCce--eeEeec--CCCCeeEEEEccCCCEEEEEC-------CeEEEEECCC------Ce-eeEEeecCCCCEEEEE
Q 008041 145 DPLTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------HK-KMQKFSGHPGAVRFMT 206 (579)
Q Consensus 145 d~~~~~~--~~~~~~--~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~------~~-~~~~~~~h~~~v~~l~ 206 (579)
++.+++. ...+.. +...+..+.|+|||++|+.+. ..|++||+.+ +. ....+..+...+.. .
T Consensus 214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-E
T ss_pred ECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-E
Confidence 9988763 222333 345678999999999888764 3799999986 43 45667767666655 5
Q ss_pred EecCCCEEEEEecCC---CeEEEEEcCCCccccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCCe--EEEEE
Q 008041 207 FSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWY 280 (579)
Q Consensus 207 ~s~~~~~l~s~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd 280 (579)
|+|+|+.|+..+..+ ..|.+||+.++....... ...+.. ..+..+.+. +++.++++...||. |++|+
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~~~~~-----~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACV-----RSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCEEEEEEEE-----TTTEEEEEEEETTEEEEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee--ccCCCCCCeEEEEEEE-----cCCEEEEEEEECCEEEEEEEE
Confidence 889999887776333 369999998764211111 122323 355556665 67788888888884 56677
Q ss_pred cCCceeec
Q 008041 281 GQNIEELR 288 (579)
Q Consensus 281 ~~~~~~~~ 288 (579)
+.+++.+.
T Consensus 366 ~~~g~~~~ 373 (710)
T 2xdw_A 366 LATGALLK 373 (710)
T ss_dssp TTTCCEEE
T ss_pred CCCCCEEE
Confidence 76665443
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=6.6e-13 Score=131.28 Aligned_cols=218 Identities=10% Similarity=0.023 Sum_probs=140.2
Q ss_pred eEEEEccCCCEEEEEeCC---C--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~lasg~~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++|||||++||+++.+ + .|.+||+.+++......... +..+.|.|.
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------------~~~~~wspd------- 114 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--------------------IRSLEWNED------- 114 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--------------------EEEEEECTT-------
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--------------------ccceeECCC-------
Confidence 345999999999988754 3 37888998887655433211 334455443
Q ss_pred cCCcEEEEEEC---------------------------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe
Q 008041 84 LGSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG 136 (579)
Q Consensus 84 ~~~~~l~~~~~---------------------------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~ 136 (579)
+..|+.++. ...|++||+.+++.+..+.. . .+..+.|+||| .+++++
T Consensus 115 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 115 --SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp --SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred --CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence 555665553 25699999999887434433 2 78899999999 777776
Q ss_pred CCC-------cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCC
Q 008041 137 ADG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHP 199 (579)
Q Consensus 137 ~d~-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~~~~~~~~~~~h~ 199 (579)
.++ ...+|.+.+++. ..+..+ ..+..+ +|||+.++.++ ..|++|| +++......+|.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~ 262 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD 262 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence 542 334443335544 334334 455444 99999887654 2688888 555444445567
Q ss_pred CCEEE-EEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeE-E
Q 008041 200 GAVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-Y 277 (579)
Q Consensus 200 ~~v~~-l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-~ 277 (579)
..+.. +.|+ ++ .+++++ .++.+++| +.+++. .....+ ...+..+.++ | ..+++++.++.. .
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~ 325 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLRE 325 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCE
T ss_pred cccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHH
Confidence 77886 8999 88 777766 68999999 874321 122223 4455666776 6 677777777654 6
Q ss_pred EEEcC
Q 008041 278 IWYGQ 282 (579)
Q Consensus 278 iwd~~ 282 (579)
+|.++
T Consensus 326 l~~~~ 330 (347)
T 2gop_A 326 LFTWD 330 (347)
T ss_dssp EEEES
T ss_pred heEeC
Confidence 77664
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=1.6e-12 Score=123.83 Aligned_cols=188 Identities=12% Similarity=0.124 Sum_probs=145.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~ 164 (579)
+++|++++.++.|.+||..+|+.++++..+....+.++.+.|+|+.++ +.++.|+.||. +|+.+..+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 678999999999999999999999888543225789999999999888 45788999998 899999988753 47889
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
+.+.|+|+++++.+ +.|..+|. +++.+.++.. +......+.+.++|+++++.. .++.|..||.. ++..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence 99999999999875 46666664 7777777642 223455678899999998876 79999999988 6633
Q ss_pred cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
........... .... ++|..+++++.+++|..||.++++.+...
T Consensus 159 -----w~~~~~~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 159 -----NSVKLSGTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp -----EEEECSSCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred -----EEEECCCCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 33333322222 3344 89999999888889999999999887554
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=8.4e-12 Score=130.58 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=148.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~v~ 163 (579)
+.++++...++.|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+... ....
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~ 243 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR 243 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence 34566666778999999999999877743 3457899999999999999999999999995 78888887753 3468
Q ss_pred EEEEc----cCCCEEEEEC---CeEEEEECCCCeeeEEeec----------CC-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HP-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 164 ~l~~~----p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~----------h~-~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
.++|+ |||++++++. ++|.++|..+.+.+.++.. |. ..+..+.+++++..++.....+|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 7999999887 8999999999998877652 11 25788899998877666666789999
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeecc
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 289 (579)
++|....+.. .+..+.. ........|+ |+|+++++++ .+++|.++|..+++.+..
T Consensus 324 ~vd~~~~~~~---~v~~i~~-~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 324 LVDYTDLNNL---KTTEISA-ERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EEETTCSSEE---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEecCCCccc---eeeeeec-cccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 9998876422 1222222 2334455676 9999987776 488999999999886543
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=9.5e-12 Score=120.03 Aligned_cols=189 Identities=8% Similarity=-0.018 Sum_probs=131.6
Q ss_pred ceEEeeecccccccccCCc-EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 69 TCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~-~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
....|.+. ++ ++++++.++.|+.||..++ ...+ ..+...+.+++++|+|+.+++...++.|.+||..
T Consensus 31 eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 31 EGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred cCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 35666654 44 7888888999999999988 3333 3466789999999999987777667899999998
Q ss_pred CCceeeEeecC----CCCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEE
Q 008041 148 TGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (579)
Q Consensus 148 ~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-------------------~~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (579)
+++........ ...+..++++|+|+++++.. +.|+.++.. ++ +..+..+......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence 88754433221 13567899999999888621 356666654 43 4455566777899
Q ss_pred EEEecCCCEEEEEecCCCeEEEEEcC-CCcc-ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 205 MTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 205 l~~s~~~~~l~s~~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
++|+|+++.+++. ..++.|.+|++. .+.. . ....+ .........++++ ++|++.++. ++.|.+||.+
T Consensus 177 i~~s~dg~~lv~~-~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 177 LAFLPSGNLLVSD-TGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEECTTSCEEEEE-TTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECTT
T ss_pred EEECCCCCEEEEe-CCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECCC
Confidence 9999999988544 468899999997 3332 1 01122 2222334556676 888866655 7889999864
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=1.3e-12 Score=141.97 Aligned_cols=236 Identities=9% Similarity=-0.004 Sum_probs=151.2
Q ss_pred eEEEEccCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDYFAIC-----SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~lasg-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++|||||++||.+ +.+..|++||+.+|+... ..+.. ......+.|.+.
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~----------------~~~~~~~~wspD------- 178 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIE----------------GGKYATPKWTPD------- 178 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBS----------------CCTTCCCEECTT-------
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccC----------------cccccceEEecC-------
Confidence 455999999999943 345689999999987531 10000 001134566654
Q ss_pred cCCcEEEEEECCCe-------------EEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEE
Q 008041 84 LGSSLLVLGTGGGD-------------VLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVC 142 (579)
Q Consensus 84 ~~~~~l~~~~~~g~-------------i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~----~v~ 142 (579)
+..|+.++.+.. |++|++.++. ++.. ...|...+.++.|+|||++++.++.++ .|+
T Consensus 179 --g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 179 --SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp --SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred --CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 667888877655 9999998876 2222 234556899999999999988877666 677
Q ss_pred EEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee--eEEeecC--CCCEEEEEEecCCCE
Q 008041 143 EIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKFSGH--PGAVRFMTFSDNGKY 213 (579)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~~--~~~~~~h--~~~v~~l~~s~~~~~ 213 (579)
+||..+++ ...+..+...+....+ |+|.+++.+. +.|.+||+.+++. ...+..| ...+..+.|+ ++..
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 78765554 3445555556666666 5666545443 5899999987753 2334333 4567888888 5556
Q ss_pred EEEEecCCCeEEEEEcCC-CccccceeeeeeecC-ceeEEeEEecCCcccCCCcEEEEEE----cCCeEEEEEcCCcee
Q 008041 214 VLSSAVGERYIALWRTDG-VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS----ETGVCYIWYGQNIEE 286 (579)
Q Consensus 214 l~s~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 286 (579)
+++.. .|+..++|.+.. ++. ...+..+ ...+..+.++ |++..++... ..++|++||+.+++.
T Consensus 333 v~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 333 SLEYL-KDATSEVRVATLKGKP-----VRTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEE-ETTEEEEEEEETTCCE-----EEECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEE-ECCEEEEEEEeCCCCe-----eEEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66655 688888886652 221 1222222 3334444454 7887766433 357899999988753
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=3.3e-12 Score=138.80 Aligned_cols=236 Identities=10% Similarity=-0.006 Sum_probs=146.3
Q ss_pred EccCCCEEEEEeCCC---cEEEE--ECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 13 fspdg~~lasg~~dg---~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+|+|++++....++ .-.+| +...+.....+.. . .+..+| ........|.|. +.
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~-~----------~~a~~~-~~~~~~~~~SPD---------G~ 133 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDP-N----------GWSKDG-TVSLGTWAVSWD---------GK 133 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECG-G----------GSSSSS-CEEEEEEEECTT---------SS
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEch-H----------HhccCC-CEEEEEEEECCC---------CC
Confidence 458999998877643 33444 4444443222211 0 001122 123445556543 56
Q ss_pred EEEEEEC-C----CeEEEEEccCCeEEEEecCCCCCCE--EEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008041 88 LLVLGTG-G----GDVLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAGADGM-------------VCEIDPL 147 (579)
Q Consensus 88 ~l~~~~~-~----g~i~iwd~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~d~~-------------v~iwd~~ 147 (579)
+|+.+.. + ..|++||+.+++.+. ..+...+ .+++|+|||+.|+.++.|.. |++|++.
T Consensus 134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~ 210 (695)
T 2bkl_A 134 KVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG 210 (695)
T ss_dssp EEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT
T ss_pred EEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC
Confidence 6664332 3 469999999998641 1122222 68899999999999988776 9999998
Q ss_pred CCc----eeeEeecCCCCeeEEEEccCCCEEEEEC--C----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008041 148 TGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (579)
Q Consensus 148 ~~~----~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~----~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 217 (579)
++. .+.....+...+.++.|+|||++++.+. + .|++|+..+++ ...+..+...+....+ ++|. ++..
T Consensus 211 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~ 287 (695)
T 2bkl_A 211 TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVL 287 (695)
T ss_dssp SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEE
T ss_pred CCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEE
Confidence 876 2223333445788999999999888765 4 77888766554 4455556666666666 6666 5555
Q ss_pred ec---CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 218 AV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 218 ~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
+. .++.|.+||+.+++......+ ...++...+..+.+. ++..+++...||..++|...
T Consensus 288 s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 288 TDEGAPRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp ECTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 43 247899999977643111111 112224445555554 56788888999988888654
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=1.8e-11 Score=119.02 Aligned_cols=237 Identities=14% Similarity=0.119 Sum_probs=154.2
Q ss_pred EEEEccCCCEEEE-------EeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 10 ~~~fspdg~~las-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
.++|+++|+++++ +..++.|.+||..+++....... . ..++ ......+.+.+.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~------------~~~~-~~~~~~i~~~~~------ 81 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-E------------VNGY-GGIPAGCQCDRD------ 81 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-E------------ETTE-ECCEEEEEECSS------
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-c------------cCCC-CCCCceEEEecC------
Confidence 4589999988887 56788999999888876432110 0 0001 112233444332
Q ss_pred ccCCcEEEEEECCCeEEEEEccCCeEEEEecCC----CCCCEEEEEEccCCCEEEEEeCC---------------CcEEE
Q 008041 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD---------------GMVCE 143 (579)
Q Consensus 83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~----h~~~V~~l~~~~~~~~l~s~~~d---------------~~v~i 143 (579)
+..+++++..+.|.+||.. ++........ ....+.+++++++|+.+++...+ +.|..
T Consensus 82 ---~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ---ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp ---SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred ---CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence 1456777766689999998 7654220211 12358899999999877776555 57888
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEc----cCCCEEEEE-C--CeEEEEECC-CCe-----eeEEeecCC-CCEEEEEEec
Q 008041 144 IDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFSD 209 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~----p~g~~l~~~-~--~~i~vwd~~-~~~-----~~~~~~~h~-~~v~~l~~s~ 209 (579)
||.. ++..... .+......++++ |+|+.++.+ . +.|++||.. +++ ....+.++. ..+..+++++
T Consensus 158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 8865 5543332 233456889999 999765554 3 799999986 454 233344443 5678899999
Q ss_pred CCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 210 ~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 283 (579)
+|+.+++.. .++.|.+||..+++.. .....+......+.++ |+++.|++++ .++.|..|+...
T Consensus 236 ~G~l~v~~~-~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEc-CCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence 998877765 5789999998865432 1223333445666676 8999665554 568999998764
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=2.1e-11 Score=119.51 Aligned_cols=223 Identities=10% Similarity=0.022 Sum_probs=151.4
Q ss_pred CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008041 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (579)
Q Consensus 25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~ 104 (579)
.++.|.+||..+++....+..... . ..+......+... ++.+.++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n---~---------~~lg~~~~~i~~~----------~~~lyv~~~~~~~v~viD~~ 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN---G---------FKLGDVAQSMVIR----------DGIGWIVVNNSHVIFAIDIN 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH---S---------SCCBSCEEEEEEE----------TTEEEEEEGGGTEEEEEETT
T ss_pred CCceEEEEECCCCEEhhhhHhhhc---C---------cccCccceEEEEE----------CCEEEEEEcCCCEEEEEECc
Confidence 478999999999987654321000 0 0001111122221 14445555567889999999
Q ss_pred CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCC-----CCeeEEEEccCCCEEEEE-
Q 008041 105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA- 177 (579)
Q Consensus 105 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~g~~l~~~- 177 (579)
+++.+.++. .......+++++++ .++.+. .++.|.+||..+++....+.... .....+++ .+++++++.
T Consensus 73 t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred ccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence 999987773 34678999999998 455554 79999999999998887776433 14567777 455555554
Q ss_pred --CCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeeeeeec
Q 008041 178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH 245 (579)
Q Consensus 178 --~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~ 245 (579)
++.|.+||..+++.+.++.... ....+.++|+|++++++. .+ +.|.+||..+.+.. .......
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~ 223 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL 223 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred CCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence 2789999999999888876433 457889999998766654 44 78999999887533 1122211
Q ss_pred CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
......++++ |++++|+++.. .|.+||..+++.
T Consensus 224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence 1234567776 89999888765 899999877654
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=2.1e-10 Score=110.28 Aligned_cols=231 Identities=8% Similarity=-0.027 Sum_probs=153.5
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.+++++++|+++++...++.|.+||.. +...... ..... ....+.+.+. +.
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~------------------~~~~i~~~~~---------g~ 69 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDA------------------KVMCLTISSD---------GE 69 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTC------------------CEEEEEECTT---------SC
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccC------------------ceeeEEECCC---------CC
Confidence 455999999987776667899999988 6543221 11111 1222333221 55
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA 166 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~ 166 (579)
+.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||. +++.... .......+.+++
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEE
Confidence 55555557889999986 44322222234567999999999987777777889999998 5654432 222345789999
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeee
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (579)
++|+|+++++.. +.|..||. +++.... +..+...+..++++++|+.+++.. .++.|.+|+. +++.. ....
T Consensus 148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~ 220 (299)
T 2z2n_A 148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----EFKI 220 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEEC
T ss_pred EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----EEEC
Confidence 999998888775 79999998 6654432 333456688999999998766553 5789999998 54422 1222
Q ss_pred ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.........+.++ ++|...++...++.|..||.
T Consensus 221 ~~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 221 PTPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp SSTTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred CCCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence 2233445566676 88886665557889999987
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=1.6e-10 Score=111.47 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=131.4
Q ss_pred eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008041 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (579)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~ 149 (579)
...|.+.+ +.++++...++.|+.||..+++.. .+ .....+.+++++++|++++ +. ++.|.+||..++
T Consensus 17 gp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 17 SPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQ 83 (297)
T ss_dssp EEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTT
T ss_pred CCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCC
Confidence 55666543 556777777889999999988763 22 2446799999999999544 44 567999999877
Q ss_pred ceeeEeecC----CCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC
Q 008041 150 SLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 150 ~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~ 212 (579)
+........ ...++.++++|+|+++++.. +.|+.++.. ++. ..+..+....+.++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCC
Confidence 654333221 23578899999999777652 244444432 333 23333445568999999999
Q ss_pred EEEEEecCCCeEEEEEcC--CCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 213 YVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 213 ~l~s~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.++.+...++.|.+|++. ++..........+.........++++ ++|++.++....+.|..||.++++.+
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 877666567899999974 44321111222222223345666776 88987777777889999998777654
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=3.9e-11 Score=131.30 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=147.6
Q ss_pred EEEEccCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 10 LTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fspdg~~lasg~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
..+|||||++||.++.+ ..|++||+.+|+.+.... . ......+.|.+.
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~------------------~~~~~~~~wspD-------- 219 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-K------------------WVKFSGLAWLGN-------- 219 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-E------------------EEESCCCEESTT--------
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-C------------------CceeccEEEECC--------
Confidence 45999999999987653 359999999998754311 0 001234556553
Q ss_pred CCcEEEEEECCC--------------eEEEEEccCCeE--EEEe-cCCCCCCEEEEEEccCCCEEEEEeCCC-----cEE
Q 008041 85 GSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MVC 142 (579)
Q Consensus 85 ~~~~l~~~~~~g--------------~i~iwd~~~~~~--~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d~-----~v~ 142 (579)
..|+.++.++ .|++|++.++.. ...+ ...+...+.++.|+|||++++..+.++ .|+
T Consensus 220 --~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 --DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp --SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred --CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 2355555443 399999987652 1111 123334589999999999988777544 899
Q ss_pred EEeCCCC--ceeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCC--eeeEEeecCCCCEEEEEEecCCC
Q 008041 143 EIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 143 iwd~~~~--~~~~~~~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~ 212 (579)
+||+.++ +....+..+...+... ++|+|+.|+..+ +.|++||+.++ +....+..+...+..+.++ ++.
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~ 375 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR 375 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE
T ss_pred EEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE
Confidence 9999877 3145555555555554 348888877664 46999999875 3333445555566677777 444
Q ss_pred EEEEEecCCCeEEEEEcC-CCccccceeeeeeec-CceeEEeEEecCCcccCCCcEEEEE-E---cCCeEEEEEcCCcee
Q 008041 213 YVLSSAVGERYIALWRTD-GVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIEE 286 (579)
Q Consensus 213 ~l~s~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~~ 286 (579)
.+++.. .|+..++|.+. .++. ...+.. ....+..+.++ |++..|+.. + ..++|++||+.+++.
T Consensus 376 lv~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 376 LFASYI-HDAKSQVLAFDLDGKP-----AGAVSLPGIGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEE-ETTEEEEEEEETTSCE-----EEECBCSSSCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEE-ECCEEEEEEEeCCCCc-----eeeccCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 555554 68887777654 2221 122322 23344555665 777755533 2 357999999988763
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.40 E-value=4.9e-10 Score=107.71 Aligned_cols=233 Identities=8% Similarity=0.024 Sum_probs=147.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++++|+++++...++.|..||.. ++. ..+.... . ......+.+.+. +.+
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---------------~-~~~~~~i~~~~~---------g~l 112 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN---------------P-DSAPYGITEGPN---------GDI 112 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---------------c-CCCceeeEECCC---------CCE
Confidence 445899999988877768889999976 443 2222100 0 011122333221 455
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|.+||. +++........+...+.++++.++|+.+++...++.|..||. +++.... .......+.++++
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 190 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK 190 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence 555556788999998 665543333345567999999999987777666789999998 6665432 2333457889999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+++|+++++.. +.|.+||. +++.... ...+...+.+++++++|+.+++.. .++.|..||.. +... .+...
T Consensus 191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~ 263 (299)
T 2z2n_A 191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQ 263 (299)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECS
T ss_pred CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCC
Confidence 99999877774 79999998 6654322 233456789999999998666543 57899999983 3211 12222
Q ss_pred cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
........+.+ ++|...++.+ .+.+..++.++.
T Consensus 264 ~~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence 22223333333 3666555544 677888876654
No 199
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=4.7e-10 Score=113.14 Aligned_cols=233 Identities=11% Similarity=0.026 Sum_probs=149.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|+|+|+++++...++.|++||..++........... . ++.|.+. +..
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-------------------~-~ia~~~~---------g~~ 184 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-------------------G-KPAVTKD---------KQR 184 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-------------------C-BCEECTT---------SSE
T ss_pred eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-------------------C-ceeEecC---------CCc
Confidence 4569999999777777789999999998887655432110 1 1334332 566
Q ss_pred EEEEECCC--eEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE----eecCC
Q 008041 89 LVLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAST 159 (579)
Q Consensus 89 l~~~~~~g--~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~ 159 (579)
++++..++ .|.+|+...+.....+ ...+...+.+++++|++..|+.+..++.|+.||..++..... ..++.
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 77777765 7999998876543222 122446678999999655666677889999999887753222 12222
Q ss_pred CC--eeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCC---------------CCEEEEEEecCCCEEEEEec
Q 008041 160 KG--ISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 160 ~~--v~~l~~~p~-g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~---------------~~v~~l~~s~~~~~l~s~~~ 219 (579)
.. ...++|+|+ +.++++-. +.|+.|+.... +..+.++. .....++++|+|+.+++ ..
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva-d~ 341 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV-DG 341 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE-ET
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE-eC
Confidence 22 139999995 55554444 79999987643 33444432 34789999999985554 44
Q ss_pred -CCCeEEEEEcCCCccccceeeeeeec------------CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 220 -GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 220 -~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.++.|+.|++..+... .+..... .-.....++++ ++|.++++-..+++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence 5789999997666422 1111000 01224556666 77777777777788887764
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=9.5e-10 Score=109.29 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=152.5
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccc
Q 008041 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (579)
Q Consensus 11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 80 (579)
++|||||++++.+. .++.|.+||..+++.+.++....... .........+.|.+.
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-----------~~~g~~p~~~~~spD---- 135 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----------FDVGPYSWMNANTPN---- 135 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-----------cccCCCccceEECCC----
Confidence 48999999998876 36789999999988887764320000 000001112333332
Q ss_pred ccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 81 ~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
+++++++.. ++.|.++| .+++.+.. +.. .. ++.+.|+++ .+++.+.||.+..+|. +++......
T Consensus 136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 677888774 47799999 99988766 421 12 244556553 4667778999999999 887764322
Q ss_pred -----cCCCC-eeEEEEccCCCEEE-EEC-CeEEEEECCCCe--eeEEeec----------CCCCEEEEEEecCCCEEEE
Q 008041 157 -----ASTKG-ISCMAVSSDGKMLA-TAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 157 -----~~~~~-v~~l~~~p~g~~l~-~~~-~~i~vwd~~~~~--~~~~~~~----------h~~~v~~l~~s~~~~~l~s 216 (579)
....+ .....+.+++..++ ... +.+.+.|+.++. .+..+.- .......+.++|+++.+++
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence 11122 12345666655433 333 899999987652 2233321 1223445789999988877
Q ss_pred Eec---------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEE-cCCeEEEEEcCCce
Q 008041 217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 217 ~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~ 285 (579)
+.. .++.|.++|+.+.+.. ..+.... ....+.++ |||+ .++++. .++.|.+||..+++
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~~i~~g~-~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEE-----EEEECCC-CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 642 1357999999887643 2333222 23456666 9999 777777 48999999999998
Q ss_pred eecc
Q 008041 286 ELRN 289 (579)
Q Consensus 286 ~~~~ 289 (579)
.+..
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 8755
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.37 E-value=1.6e-09 Score=107.64 Aligned_cols=186 Identities=8% Similarity=-0.103 Sum_probs=123.3
Q ss_pred EEccCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCC
Q 008041 12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (579)
Q Consensus 12 ~fspdg~~lasg~~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (579)
...|+++++..... .. +|.+||..+++.+.++.....+ .+.++++ +
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD---------------------------g 77 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS---------------------------G 77 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC---------------------------C
Confidence 45688887776653 22 8899999999988776533221 4444444 6
Q ss_pred cEEEEEE----------CCCeEEEEEccCCeEEEEecCC------CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCC
Q 008041 87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT 148 (579)
Q Consensus 87 ~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~ 148 (579)
..++++. .++.|.+||+.+.+.+.++.-+ +......+.|+|||+++++++. ++.|.++| .+
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 6777775 3577999999998877655322 0123568999999999998874 57899999 99
Q ss_pred CceeeE-eecCCCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEee-----cCCCCE-EEEEEecCCCEEEEEe
Q 008041 149 GSLLGK-FRASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFS-----GHPGAV-RFMTFSDNGKYVLSSA 218 (579)
Q Consensus 149 ~~~~~~-~~~~~~~v~~l~~~p~g~~-l~~~~--~~i~vwd~~~~~~~~~~~-----~h~~~v-~~l~~s~~~~~l~s~~ 218 (579)
++.+.. +.... |+.+.|+++. +++.. |.+.++|. +++.+.... ....++ ....+.+++..++..+
T Consensus 157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 988877 65322 3556666643 23332 89999999 877663321 112222 2346677766555544
Q ss_pred cCCCeEEEEEcCCCc
Q 008041 219 VGERYIALWRTDGVK 233 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (579)
.++.+.+.|+....
T Consensus 232 -~~~~v~vid~~~~~ 245 (373)
T 2mad_H 232 -YSGKILQADISAAG 245 (373)
T ss_pred -CCceEEEEeccCCc
Confidence 57889999987653
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=7e-11 Score=129.23 Aligned_cols=184 Identities=12% Similarity=0.016 Sum_probs=120.7
Q ss_pred CcEEEEEECC-C----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc--------------EEEEeC
Q 008041 86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--------------VCEIDP 146 (579)
Q Consensus 86 ~~~l~~~~~~-g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~--------------v~iwd~ 146 (579)
++.|+.+..+ | .|++||+.+++.+.... +...+.+++|+|| +.|+.++.|+. |++|++
T Consensus 174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l 250 (741)
T 1yr2_A 174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL 250 (741)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence 6667666543 3 59999999998764321 1112357899999 98888876654 899999
Q ss_pred CCCce--eeEeec--CCCCeeEEEEccCCCEEEEEC--C-----eEEEEECCCC--eeeEEeecCCCCEEEEEEecCCCE
Q 008041 147 LTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 147 ~~~~~--~~~~~~--~~~~v~~l~~~p~g~~l~~~~--~-----~i~vwd~~~~--~~~~~~~~h~~~v~~l~~s~~~~~ 213 (579)
.++.. ...+.. +...+..+.|+|||++++... + .|++||+.++ +....+..+...+.... +|+|+.
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence 87752 223333 223588999999999887765 2 8999999887 31455665655555553 488888
Q ss_pred EEEEecC---CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 214 VLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 214 l~s~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
|+..+.. ++.|.+|++.+.. .. ......+....+..+.+. ++..+++...||..++|..+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 8877632 3459999987742 10 111223344445444553 55778888889987777543
No 203
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=1e-10 Score=126.77 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=149.3
Q ss_pred EEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 10 LTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 10 ~~~fspdg~~lasg~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.++|||||++||.+. .+..|+|||+.+|+.+.... . ......+.|. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~------------------~~k~~~~~Ws-D-------- 184 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-K------------------DVKFSGISWL-G-------- 184 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E------------------EEESCCCEEE-T--------
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-C------------------CceeccEEEe-C--------
Confidence 348999999999643 23579999999998654210 0 0012344565 3
Q ss_pred CCcEEEEEECCC-------------eEEEEEccCCeE----EEEecCC-CCCCEEEEEEccCCCEEEEEeC----CCcEE
Q 008041 85 GSSLLVLGTGGG-------------DVLALAVSAGQL----KWRLSDC-HPGGVSAISFATHGSCIYSAGA----DGMVC 142 (579)
Q Consensus 85 ~~~~l~~~~~~g-------------~i~iwd~~~~~~----~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~----d~~v~ 142 (579)
+..|+.++.+. .|++|++.++.. +... .. |...+.++.|+|||++++.... +..|+
T Consensus 185 -g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 185 -NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp -TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred -CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 55577776663 399999987642 2111 23 4556789999999998754432 35899
Q ss_pred EEeCCCCc-eeeEeecCCCCeeEEEEccCCCEEEE-EC-----CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCE
Q 008041 143 EIDPLTGS-LLGKFRASTKGISCMAVSSDGKMLAT-AA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKY 213 (579)
Q Consensus 143 iwd~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~~-~~-----~~i~vwd~~~~~~--~~~~~~h~~~v~~l~~s~~~~~ 213 (579)
++|+.++. ....+..+....... ++++|..|+. +. +.|..+|+.++.. ...+..|...+. .|++++++
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 99998764 445566566555554 6666665554 33 5799999988754 355666766655 89999998
Q ss_pred EEEEecCCC--eEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC----CeEEEEEcCCce
Q 008041 214 VLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIE 285 (579)
Q Consensus 214 l~s~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~ 285 (579)
|+.....++ .|++|++..+... ...+.... .+....++ +++..++....+ ++++.||+.+++
T Consensus 340 lv~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~-~~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 340 LFAEYMVDATARVEQFDYEGKRVR----EVALPGLG-SVSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEE----EECCSSSS-EEEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEEECCeeEEEEEECCCCeeE----EeecCCCc-eEEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 888775555 6888888754321 11222222 23333333 677766665544 799999988765
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.36 E-value=3.3e-10 Score=111.20 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=157.5
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCc-------cccccccccccccccccccccceEEe
Q 008041 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
+++||||++++.++ .++.|.+||..+++.+.++.... .....+.++++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD--------------- 147 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD--------------- 147 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence 49999999887765 36789999999999988775321 12333444444
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cc
Q 008041 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS 150 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~ 150 (579)
+.+++++.. ++.|.++|+.+++.+.++.-. .. ...+....+.+++.+.||.+.+.++.+ ++
T Consensus 148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 777887764 678999999999998777321 12 223333455677888999999999876 55
Q ss_pred eeeEeecC----CCCe-eEEEEc-cCCCEEEEEC-CeEEEEECCCCe--eeEEee----------cCCCCEEEEEEecCC
Q 008041 151 LLGKFRAS----TKGI-SCMAVS-SDGKMLATAA-GQLKTFNCSDHK--KMQKFS----------GHPGAVRFMTFSDNG 211 (579)
Q Consensus 151 ~~~~~~~~----~~~v-~~l~~~-p~g~~l~~~~-~~i~vwd~~~~~--~~~~~~----------~h~~~v~~l~~s~~~ 211 (579)
...+...+ ..++ ....|. ++|++++... |.+++.|..++. .+..+. ........+++++++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 43322111 1222 224664 7887766665 999999997653 333222 012234457889999
Q ss_pred CEEEEEecC---------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEEc-CCeEEEEE
Q 008041 212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISE-TGVCYIWY 280 (579)
Q Consensus 212 ~~l~s~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-dg~i~iwd 280 (579)
+.++..-.. .+.|.+.|+.+.+.. ..+.-.. ....+.++ +|++ +|++.+. ++.|.++|
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~-----~~i~vg~-~~~~lavs-----~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMGH-EIDSINVS-----QDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEE-----EEEECCC-CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence 888776421 257999999998754 2222222 23445666 8986 6777654 89999999
Q ss_pred cCCceeecccC
Q 008041 281 GQNIEELRNTK 291 (579)
Q Consensus 281 ~~~~~~~~~~~ 291 (579)
..+++.+...+
T Consensus 361 ~~t~k~~~~i~ 371 (386)
T 3sjl_D 361 AESGEELRSVN 371 (386)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCcEEEEec
Confidence 99998876654
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=5.4e-10 Score=108.46 Aligned_cols=191 Identities=9% Similarity=0.075 Sum_probs=124.6
Q ss_pred CcEEEE-------EECCCeEEEEEccCCeEEEEec---CCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~-------~~~~g~i~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
+.++++ ++.++.|.+||..+++...... .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI 106 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence 555555 4778899999998887643221 124467999999999 65 4444445579999987 765433
Q ss_pred -eec----CCCCeeEEEEccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEe----
Q 008041 155 -FRA----STKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---- 208 (579)
Q Consensus 155 -~~~----~~~~v~~l~~~p~g~~l~~~~-----------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s---- 208 (579)
... ....+.+++++|+|+++++.. +.|..||.. ++.. .+..+......++|+
T Consensus 107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d 184 (314)
T 1pjx_A 107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTT
T ss_pred EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccC
Confidence 221 123588999999999888775 256677765 5443 333344556889999
Q ss_pred cCCCEEEEEecCCCeEEEEEcC-CCccccceeeeeeecCc-eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 209 ~~~~~l~s~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
|+++.++.+...++.|.+|++. .++.............. .....++++ ++|+..++...++.|.+||.++++
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 9997766665467899999986 33211111112222221 334556676 889888887788999999876553
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=1.8e-09 Score=103.75 Aligned_cols=232 Identities=10% Similarity=0.037 Sum_probs=151.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.+++++++|+++++...++.|.+||.. ++... +.... . ......+.+.+. +.+
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l 75 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---------------P-DAKVMCLIVSSL---------GDI 75 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---------------C-CCcceeEEECCC---------CCE
Confidence 445899999988777678999999987 65543 21100 0 011222333221 454
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.++++
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 4544457889999988 655322223344679999999999877777668899999987 655422 2323457899999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+|+|+++++.. +.|..||. +++.... ...+...+..+.++++|..+++.. ..+.|.+|+. .++.. .....
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 226 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIP 226 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECC
Confidence 99999777765 78999998 5554331 223445688999999998766553 5678999998 33321 12222
Q ss_pred cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
........+.++ ++|+..++...++.|..||.
T Consensus 227 ~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 TPNARPHAITAG-----KNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence 223344566676 78886666556789999986
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.32 E-value=8.3e-11 Score=111.55 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=130.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++++++|+++++.. ++.|.+||..++... .+.... ......+.+.+. +.++
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~-----------------~~~p~~i~~~~~---------g~l~ 122 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDG-----------------LNYPEGLAVDTQ---------GAVY 122 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCS-----------------CSSEEEEEECTT---------CCEE
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCC-----------------cCCCcceEECCC---------CCEE
Confidence 449999999666655 889999998765432 221100 011223333321 5555
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (579)
++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||...+........+...+.++++++
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 201 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence 55566788999976655443222 23334678999999998777766788999999876654433333336789999999
Q ss_pred CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 170 ~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
+|.++++.. +.|.+||............+...+.+++++++|+.+++.. .++.|+++++...+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence 998777775 7899999876544332223446789999999998666655 78999999987764
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=2.3e-11 Score=120.00 Aligned_cols=183 Identities=8% Similarity=0.077 Sum_probs=126.6
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
+++.+ ++++...++++|+.+ .++||++.+.+... ...... +.+..... ... ++.+.| +
T Consensus 39 ~~nlL--ais~~~gll~a~~~~-~l~v~~~~~l~~~~--~~~~~~-----~~~~~~~~-lp~-V~~l~f---d------- 96 (388)
T 1xip_A 39 SLQNL--DISNSKSLFVAASGS-KAVVGELQLLRDHI--TSDSTP-----LTFKWEKE-IPD-VIFVCF---H------- 96 (388)
T ss_dssp CCBCE--EEETTTTEEEEEETT-EEEEEEHHHHHHHH--HSSSCC-----CCCSEEEE-CTT-EEEEEE---E-------
T ss_pred cccEE--EEcCCCCEEEEeCCC-EEEEEEhhHhhhhh--cccccc-----ccceEEee-CCC-eeEEEE---C-------
Confidence 45445 999999999999988 46779875433000 000000 00000001 112 556666 2
Q ss_pred CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+..++++ .+|.|++||+.+....... ..|..++.++.+.+. .+++++.||.|.+||+.++.... +...|+|
T Consensus 97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 6778888 8899999999876543332 457778998887764 38889999999999999887653 3458999
Q ss_pred EEEccCCCEEEEECCeEEEEECCCCee--eEEe------e---cCCCCEEEEEEecCCCEEEEEe
Q 008041 165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~~~i~vwd~~~~~~--~~~~------~---~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
++|+|+|..+..+.|.+++|+...++. ..++ . +|...|.+|.|.+++.++++-+
T Consensus 168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999943333339999999888775 5566 2 4788999999999999888744
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=3.1e-09 Score=103.85 Aligned_cols=183 Identities=14% Similarity=0.023 Sum_probs=121.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG 161 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~ 161 (579)
+.++++...++.|..||..+++..... ....+.++.|+|+|+++++. .+ .|.+||..+++........ ...
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~---~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~ 135 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR 135 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEE---CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCC
Confidence 456677777889999999988754221 34679999999999876654 44 4999999888754332211 236
Q ss_pred eeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--C
Q 008041 162 ISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--G 231 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~--~ 231 (579)
+..++++|+|+++++.. +.|+.++ +++.. .+..+......++|+|+++.++.+...++.|.+|++. +
T Consensus 136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~ 212 (326)
T 2ghs_A 136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART 212 (326)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc
Confidence 88999999999777653 3566666 45433 3333344578899999999876665567899999986 4
Q ss_pred C-ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 232 V-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
+ ..........+.........+.++ ++|.+.++...++.|..||.
T Consensus 213 Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 213 GLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp CCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred CCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence 4 321111222222222344556666 78887766666788888876
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=3.6e-09 Score=101.62 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=146.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++++++|+++++...++.|..||.. ++.. .+.... . ......+...+. +.+
T Consensus 65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l 117 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDI 117 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCE
Confidence 445889999877776667889999987 6553 222110 0 011223333221 555
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (579)
.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||. +++.... ...+...+.++++
T Consensus 118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 195 (300)
T 2qc5_A 118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS 195 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE
Confidence 5555557889999988 66543223334567899999999996666656788999998 5654432 2223457899999
Q ss_pred ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee
Q 008041 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (579)
Q Consensus 168 ~p~g~~l~~~~--~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (579)
+++|++.++.. +.|.+||. +++.... +..+...+.+++++++|+.+++.. .++.|..|+.. ++.. .+...
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~-g~~~----~~~~~ 268 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRITND-NTIQ----EYQLQ 268 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECTT-SCEE----EEECC
T ss_pred CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEECCC-CcEE----EEECC
Confidence 99998877765 68999998 5544332 334456788999999998666543 57899999983 3211 12222
Q ss_pred cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
........+.++ ++|...++.. . .|..+|.
T Consensus 269 ~~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 269 TENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred ccCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence 222334555565 7887555544 4 7777764
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=3.3e-09 Score=102.13 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=136.2
Q ss_pred EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
..|+|++. ++++...++.|..||..++... .+. ... ...++.+.+. +. +
T Consensus 18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~------------------~~~~i~~~~d---------G~-l 67 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDA------------------PVSSVALRQS---------GG-Y 67 (297)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSS------------------CEEEEEEBTT---------SS-E
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCC------------------ceEEEEECCC---------CC-E
Confidence 47899655 4555556889999999887653 222 111 2233444332 45 4
Q ss_pred EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEe
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKF 155 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s~~~-----------d~~v~iwd~~~~~~~~~~ 155 (579)
+++. ++.|.+||..+++...... .+ ....+.+++++|+|+++++... .+.|+.+|. .++... +
T Consensus 68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-~ 144 (297)
T 3g4e_A 68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-DHHVKK-Y 144 (297)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-TSCEEE-E
T ss_pred EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-CCCEEE-E
Confidence 5555 5679999999887642221 11 1235889999999996665432 234555553 244333 3
Q ss_pred ecCCCCeeEEEEccCCCEEEEEC---CeEEEEEC--CCCee-----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~--~~~~~-----~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
.......+.++|+|+++.++.+. +.|.+|++ .++.. +..+..+......++++++|++.++.. .++.|.
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~ 223 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVI 223 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEE
Confidence 33344568999999999776554 78999987 45532 223333445678999999998776655 578899
Q ss_pred EEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (579)
.||..+++.. ..+..+...+.+++|. -|+++.|++++.
T Consensus 224 ~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~ 261 (297)
T 3g4e_A 224 RLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA 261 (297)
T ss_dssp EECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred EEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence 9999877633 3344444445566664 156676666654
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1.6e-09 Score=106.29 Aligned_cols=276 Identities=14% Similarity=0.016 Sum_probs=164.1
Q ss_pred CcEEEEEEC-----CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008041 86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~-----~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~ 150 (579)
+..+++... ++.|.++|..+++.+.++..+.. + . +.++|||+++++++ .++.|.+||..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 566777765 57899999999999887754433 4 4 99999999988875 36789999999999
Q ss_pred eeeEeecCC-------CCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008041 151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 151 ~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
.+.++.... .....++++|||++++++. +.|.++|+.+++.+.++.-.. . ...+....+.+++.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~- 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC- 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence 988875432 2467899999999888764 689999999999998885321 1 223333445566665
Q ss_pred CCCeEEEEEcCC-Cccccceeeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce--eecccC----
Q 008041 220 GERYIALWRTDG-VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK---- 291 (579)
Q Consensus 220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~---- 291 (579)
.||.+.+.++.. ++... .....+. ..........|. .++|++++ .+.+|+|+++|..+.. .+....
T Consensus 197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred CCCCEEEEECCCCCeEEE-eecceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 688888888876 33210 0000000 001111111221 16776555 6668999999986653 221111
Q ss_pred -----CeeEEeeeccCCcccccccchhhhhcccc---ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-
Q 008041 292 -----ATKILSSSEDVNSKSQKSATAAIFAAKLQ---DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV- 362 (579)
Q Consensus 292 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~- 362 (579)
.....-.....+.++++ .++.+..+ +.-+.....+++.+-. .+....++..-. ....+++++||+
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg~-~~~~lavs~D~~~ 344 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMGH-EIDSINVSQDEKP 344 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEE-EECEEEECSSSSC
T ss_pred ccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECCC-CcceEEECCCCCe
Confidence 00000000000122222 23332211 1111112456666543 334444443322 678999999997
Q ss_pred eeeccccceecccceeee
Q 008041 363 LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 363 ~l~~s~s~d~~~~~w~~~ 380 (579)
.|.++...++++.+.+..
T Consensus 345 ~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 553445557888888774
No 213
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.26 E-value=7e-10 Score=119.44 Aligned_cols=240 Identities=16% Similarity=0.193 Sum_probs=157.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccC-cccc-ccccccccccccccccccceEEeeecccccccccCCcEEEEEE
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (579)
++..++.++.|+.|..+|..+|+.+..+... .... .....++ +.. +..+++++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-------------~v~------------~g~v~vg~ 174 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-------------RVV------------NGKVVIGN 174 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-------------EEE------------TTEEEECC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-------------EEE------------CCEEEEEe
Confidence 4567888889999999999999999887642 1100 0000000 000 34455554
Q ss_pred C------CCeEEEEEccCCeEEEEecCCC-C-----------------------------CCEEEEEEccCCCEEEEEeC
Q 008041 94 G------GGDVLALAVSAGQLKWRLSDCH-P-----------------------------GGVSAISFATHGSCIYSAGA 137 (579)
Q Consensus 94 ~------~g~i~iwd~~~~~~~~~~~~~h-~-----------------------------~~V~~l~~~~~~~~l~s~~~ 137 (579)
. +|.|+.||..+|+.++++.... . .....+++.|++..++.++.
T Consensus 175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~ 254 (689)
T 1yiq_A 175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG 254 (689)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence 3 6889999999999988764211 0 01125788898889999887
Q ss_pred CCc-------------------EEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEE
Q 008041 138 DGM-------------------VCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTF 184 (579)
Q Consensus 138 d~~-------------------v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--~~i~vw 184 (579)
++. |..||..+|+.+..++.. . .++.......+|+ .++.++ |.++++
T Consensus 255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence 764 999999999999887642 1 1222223334665 677776 899999
Q ss_pred ECCCCeeeEEeecCC-C--------------------------------------CEEEEEEecCCCEEEEEecC-----
Q 008041 185 NCSDHKKMQKFSGHP-G--------------------------------------AVRFMTFSDNGKYVLSSAVG----- 220 (579)
Q Consensus 185 d~~~~~~~~~~~~h~-~--------------------------------------~v~~l~~s~~~~~l~s~~~~----- 220 (579)
|.++|+.+....-.. . .-..++|+|+...+++...+
T Consensus 335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 414 (689)
T 1yiq_A 335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY 414 (689)
T ss_dssp ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence 999999874332110 0 01236888988877765311
Q ss_pred ---------------------------------------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCccc
Q 008041 221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (579)
Q Consensus 221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (579)
++.|..||+.+++.. .....+....... +.
T Consensus 415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~----- 483 (689)
T 1yiq_A 415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-----WEVPYVTIFNGGT-LS----- 483 (689)
T ss_dssp ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----
T ss_pred eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-----eEccCCCCccCcc-ce-----
Confidence 377999999998744 3333333222222 22
Q ss_pred CCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 262 DAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+..+++++.||.++.||.++|+.+...+
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 467789999999999999999999986554
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.26 E-value=1.8e-09 Score=107.89 Aligned_cols=237 Identities=13% Similarity=0.123 Sum_probs=157.5
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccC-------ccccccccccccccccccccccceEEe
Q 008041 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
++|||||++++.+. .++.|.++|..+++.+.++.-. ......+.++++
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD--------------- 187 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD--------------- 187 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 48999999888775 3678999999999998877532 122334444444
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc
Q 008041 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS 150 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~v~iwd~~~~~ 150 (579)
+.+++++.. ++.|.+.|+.+++.+.++.-+. . ....|++ +.+++.+.||.+.+.+..+++
T Consensus 188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 777888774 5789999999999987764321 1 2334443 556777788888888886665
Q ss_pred eeeE----eecCCCC-eeEEEEccCCCEEEEEC--CeEEEEECCCCeee--EEeec----------CCCCEEEEEEecCC
Q 008041 151 LLGK----FRASTKG-ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSG----------HPGAVRFMTFSDNG 211 (579)
Q Consensus 151 ~~~~----~~~~~~~-v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~--~~~~~----------h~~~v~~l~~s~~~ 211 (579)
.... +.....+ ...+.+.+++..++... +.+.+.|....... ..+.- .......++++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 5422 2222222 12456789888766655 89999998765321 11110 01122236899999
Q ss_pred CEEEEEec---------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCc-EEEEEE-cCCeEEEEE
Q 008041 212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (579)
Q Consensus 212 ~~l~s~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd 280 (579)
+.++++.. .++.|.++|+.+.+.. ..+.-.. ....+.++ |||+ ++++.. .++.|.++|
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~-~P~gia~s-----pDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGH-EIDSINVS-----QDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCC-CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence 87777642 1357999999998744 2222222 23455666 9999 888888 499999999
Q ss_pred cCCceeeccc
Q 008041 281 GQNIEELRNT 290 (579)
Q Consensus 281 ~~~~~~~~~~ 290 (579)
..+++.+..+
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999887654
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=1.3e-08 Score=99.47 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=135.1
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..+|+|++. ++++...++.|.+||..+++... +.. ...+.++.|.+. +.
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~d---------g~- 102 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISD---------SK- 102 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEET---------TE-
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCC---------Ce-
Confidence 348999865 44555567899999998876532 211 112345556542 44
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecC--CC-CCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~--~h-~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
+++++.+ .|.+||..+++....... +. ...+.++.++|+|+++++... .+.|+.+| +++.. .+....
T Consensus 103 l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 103 QLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 4445544 499999988876422211 11 235899999999987665432 24566666 45443 333333
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECC--CC-e-----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-K-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~-~-----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
.....++|+|+|+.++.+. +.|.+||+. ++ + .+..+.........+.+.++|.+.++.. .++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 4678999999998776554 789999986 55 3 2223333445678899999998776654 568899999
Q ss_pred cCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (579)
.. ++. +..+..+...+.+++|. .+++..|++++.
T Consensus 258 ~~-g~~-----~~~i~~~~~~~~~~af~----g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 TD-GNH-----IARYEVPGKQTTCPAFI----GPDASRLLVTSA 291 (326)
T ss_dssp TT-CCE-----EEEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred CC-CCE-----EEEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence 84 332 12333344445566663 156666655554
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1.4e-09 Score=116.90 Aligned_cols=241 Identities=17% Similarity=0.225 Sum_probs=161.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccC-ccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
++..++.++.|+.|..+|..+|+.+..+... .........+.+ +. .+..+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p------------~v------------~~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP------------RV------------FKGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC------------EE------------ETTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc------------EE------------ECCEEEEEec
Confidence 4567888888999999999999999887643 110000000000 00 0445666654
Q ss_pred ------CCeEEEEEccCCeEEEEecCCCCC-------------------------------CEEEEEEccCCCEEEEEeC
Q 008041 95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA 137 (579)
Q Consensus 95 ------~g~i~iwd~~~~~~~~~~~~~h~~-------------------------------~V~~l~~~~~~~~l~s~~~ 137 (579)
+|.|+.||..+|+.++++...... ....++++|++..++.++.
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 688999999999998877432111 1135788899999888876
Q ss_pred CC-------------------cEEEEeCCCCceeeEeecCC---------CCeeEEEEccCC---CEEEEEC--CeEEEE
Q 008041 138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF 184 (579)
Q Consensus 138 d~-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g---~~l~~~~--~~i~vw 184 (579)
++ .|..+|..+|+.+..++... .....+....+| +.++.++ |.++++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 59999999999988876421 123333444577 5677776 899999
Q ss_pred ECCCCeeeEEeecCCCC-----------E------------------------EEEEEecCCCEEEEEecC---------
Q 008041 185 NCSDHKKMQKFSGHPGA-----------V------------------------RFMTFSDNGKYVLSSAVG--------- 220 (579)
Q Consensus 185 d~~~~~~~~~~~~h~~~-----------v------------------------~~l~~s~~~~~l~s~~~~--------- 220 (579)
|.++|+.+..+.-...+ + ..++|+|++..+++....
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 99999988766422100 1 156889988887775420
Q ss_pred ---------------------------------CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEE
Q 008041 221 ---------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (579)
Q Consensus 221 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (579)
.+.|..||+.+++.. ....+........ +. .++..+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----~~g~~v 491 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----WSVEHVSPWNGGT-LT-----TAGNVV 491 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----eecCCCCCCcCcc-eE-----eCCCEE
Confidence 267999999988743 3333332222222 22 467788
Q ss_pred EEEEcCCeEEEEEcCCceeecccC
Q 008041 268 LAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
++++.||.+++||..+++.+..+.
T Consensus 492 ~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEECCCCceeeeee
Confidence 889999999999999999886654
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.18 E-value=2.8e-08 Score=100.14 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=123.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEe----ecCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST 159 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~----~~~~ 159 (579)
+.++++...++.|++||+.++...... ... .... ++|+|+++.++++..++ .|..|+...+.....+ ....
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 555555566688999999988775433 222 2233 99999999999888766 7999998766544343 2144
Q ss_pred CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE----eecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~----~~~h~~~v--~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
..+.+++++|++..|+++. +.|+.||..++..... ..++...- ..++|+|++..|+.+...++.|+.|+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 5778999999444444455 7899999987754322 22222222 39999996555555555788999998765
Q ss_pred CccccceeeeeeecC--------------ceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCce
Q 008041 232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 285 (579)
... . . .... -.....++++ ++|.++++-+ .+++|+.|+..+++
T Consensus 299 ~~~----~-~-~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 299 ECE----W-F-CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CEE----E-E-EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEE----E-E-EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCE
Confidence 311 1 1 1111 1224556676 8999777777 78899999977665
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.17 E-value=8.7e-09 Score=101.74 Aligned_cols=232 Identities=11% Similarity=-0.024 Sum_probs=144.8
Q ss_pred EEc--cCCCEEEEEe-CCCcEEEEECCCC----eEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 12 ~fs--pdg~~lasg~-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.++ +++++|...+ .+++|.|+|+.+. +...++... .+. .. .+. +.+. .+...+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~----~~---~g~-s~Ph-~~~~~p--------- 147 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVK----KV---SGY-SRLH-TVHCGP--------- 147 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHH----HH---HCE-EEEE-EEEECS---------
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcc----cc---cCC-Cccc-ceeECC---------
Confidence 457 8888877654 6889999999765 555555200 000 00 000 0000 000011
Q ss_pred CCcEEEEEECC------CeEEEEEccCCeEEEEecCC-CC-CCEEEEEEccCCCEEEEEe-------------------C
Q 008041 85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A 137 (579)
Q Consensus 85 ~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~s~~-------------------~ 137 (579)
++ +++++..+ |.|.++|..+++.+.+...+ .. .--..+.|+|+++.+++.. .
T Consensus 148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 13 45554444 67999999999998777533 22 2234688899999888874 3
Q ss_pred CCcEEEEeCCCCceeeEeecCC--CCeeEEEE--ccCCCEEEEEC--------CeEEEEECCCCee--eEE--eecC---
Q 008041 138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQK--FSGH--- 198 (579)
Q Consensus 138 d~~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--~p~g~~l~~~~--------~~i~vwd~~~~~~--~~~--~~~h--- 198 (579)
+.+|.+||+.+++.+.++.... .....+.| +|+|+++.++. ++|.+|..+.++. ... +...
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 6899999999998888877531 24556666 99999776643 5787766554432 111 1110
Q ss_pred -------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc----------e----eEE
Q 008041 199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA----------V----FMD 251 (579)
Q Consensus 199 -------------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----------~----~~~ 251 (579)
......|.+++||++|+++....+.|.+||+...... +.+..+.... . .-.
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~--~lv~~I~tGG~~~~~~~~~G~~~~ggPr 384 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP--VLTGKVKLGGIFHRADHPAGHKLTGAPQ 384 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--EEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEEEEeCCeeccccccccccCCCCCC
Confidence 2346789999999999998877899999998643221 1222222110 0 135
Q ss_pred eEEecCCcccCCCcEEEEEE
Q 008041 252 CRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~ 271 (579)
.+.++ |||++|+++.
T Consensus 385 ~~~lS-----pDGk~LyVaN 399 (462)
T 2ece_A 385 MLEIS-----RDGRRVYVTN 399 (462)
T ss_dssp CEEEC-----TTSSEEEEEC
T ss_pred EEEEc-----CCCCEEEEEc
Confidence 56666 9999999998
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.15 E-value=2.2e-11 Score=121.22 Aligned_cols=222 Identities=9% Similarity=0.012 Sum_probs=117.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..+++++.||.|..||..+|+....+.. ..+....+.. ++..+++++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~---------------------------~g~~~v~~s~d 58 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV---------------------------EEPAFLPDPND 58 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc---------------------------CCCEEEEeCCC
Confidence 578899999999999999999999988764 2111110100 14456777899
Q ss_pred CeEEEEEccCCeEEEEecCCCCC-CEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPG-GVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~-~V~-~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~ 173 (579)
|.|+.||..+|+.++.... +.. .+. +..+. ++..+++++.|+.|+.||..+|+.+..+..+. ...++|++..
T Consensus 59 g~l~a~d~~tG~~~w~~~~-~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~ 132 (369)
T 2hz6_A 59 GSLYTLGSKNNEGLTKLPF-TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL 132 (369)
T ss_dssp CCEEEC-----CCSEECSC-CHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred CEEEEEECCCCceeeeeec-cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence 9999999999987665521 211 110 00111 34567888889999999999999888776543 2345677777
Q ss_pred EEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccccceeeeeeecCce
Q 008041 174 LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (579)
Q Consensus 174 l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (579)
+++++ +.|+.||.++|+.+..+..+. .....+.++. ..+++++ .|+.|..||..+++.. ........
T Consensus 133 v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~-----W~~~~~~p 204 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL-----WIQNYASP 204 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE-----EEEECSSC
T ss_pred EEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE-----EEecCCCc
Confidence 77776 899999999998876654221 1223333331 3455555 6999999999988743 33333333
Q ss_pred eEEeEEecCCcccCCCcEEEE--EEcCCeEEEEEcCCce
Q 008041 249 FMDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE 285 (579)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~ 285 (579)
......++ ++|...+. ...++.++.+|..+|+
T Consensus 205 v~~~~~~~-----~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 205 VVAFYVWQ-----REGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp EEEEEECT-----TSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred eEEEEEec-----CCceEeccceeecccceeeeehhcCC
Confidence 33333343 45432110 0113455666665555
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.14 E-value=8.2e-09 Score=103.19 Aligned_cols=274 Identities=12% Similarity=-0.004 Sum_probs=165.3
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008041 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~ 150 (579)
+..+++.... +.|.++|+.+++.+.++..+. .+ .+.++|||++++.+. .++.|.++|..+++
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 4556666553 689999999999988875443 34 899999999988876 36789999999999
Q ss_pred eeeEeecC-------CCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEe
Q 008041 151 LLGKFRAS-------TKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA 218 (579)
Q Consensus 151 ~~~~~~~~-------~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~ 218 (579)
.+.++.-. ......+.++|||++++++. +.|.++|+.+++.+.++.-.. . ....|++ +.+++.+
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~ 236 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNC 236 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEc
Confidence 98887532 23456789999999988864 689999999999988886321 1 2334443 4444444
Q ss_pred cCCCeEEEEEcCCCccccce-eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccCCee---
Q 008041 219 VGERYIALWRTDGVKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK--- 294 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 294 (579)
.||.+.+.+...++..... ..+..... .......+. +++..++..+..|.+.+.|........ ..+..
T Consensus 237 -~dG~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~-----~dg~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~~~~ 308 (426)
T 3c75_H 237 -RDGSLARVDFADGETKVTNTEVFHTEDE-LLINHPAFS-----LRSGRLVWPTYTGKIFQADLTAEGATF-RAPIEALT 308 (426)
T ss_dssp -TTSSEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEEC-----TTTCEEEEEBTTSEEEEEEECSSCEEE-CCCEESSC
T ss_pred -CCCCEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeec-----CCCCEEEEEeCCCcEEEEeccCCceEE-eeeeeecc
Confidence 6888887787444321000 00111111 111112334 788888778888999999986543211 00000
Q ss_pred -------EEeee--ccCCcccccccchhhhhccccc---eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc
Q 008041 295 -------ILSSS--EDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (579)
Q Consensus 295 -------~~~~~--~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (579)
..... ...++++++ .++.+...+ .-+...+.+.+.+- .......++.... ....++|+|||+
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~----rlyVa~~~~~~gthk~~s~~VsVID~-~T~kvv~~I~vg~-~P~gia~spDg~ 382 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSD----RIYLLVDQRDEWKHKAASRFVVVLNA-ETGERINKIELGH-EIDSINVSQDAE 382 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGT----EEEEEEEECCTTCTTSCEEEEEEEET-TTCCEEEEEEEEE-EECEEEECCSSS
T ss_pred ccccccccccCCceeeEEcCCCC----EEEEEecccccccccCCCCEEEEEEC-CCCeEEEEEECCC-CcCeEEEccCCC
Confidence 00000 001233333 233322110 00011345666553 2334444444332 478899999999
Q ss_pred -eeeccccceecccceeee
Q 008041 363 -LLPMSQSLLKSKRGRYVQ 380 (579)
Q Consensus 363 -~l~~s~s~d~~~~~w~~~ 380 (579)
++.++...++++.+.|..
T Consensus 383 ~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp CEEEEEETTTTEEEEEETT
T ss_pred EEEEEEcCCCCeEEEEECC
Confidence 773444358888888874
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.13 E-value=1.3e-09 Score=107.29 Aligned_cols=239 Identities=9% Similarity=0.072 Sum_probs=140.3
Q ss_pred EEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++++|+|+++++... ++.++||.+.+++.. .+..... . ..+++. ....+.+.+. +.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~---------~-~~~~~~-~p~gv~~d~~---------g~ 79 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSG---------N-AIITFD-TVLGIKSDGN---------GI 79 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCS---------S-CCCCCS-CEEEEEECSS---------SE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCccc---------C-ccccee-EeeEEEEcCC---------Cc
Confidence 3489999999888642 343556655456532 2321100 0 011111 2223334331 44
Q ss_pred EEEEEEC-----CCeEEEEEccCCeEEEEecC-----CCCCCEEEEEEccCCCEEE-EEe---CCCcEEEEeCCCCceee
Q 008041 88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIY-SAG---ADGMVCEIDPLTGSLLG 153 (579)
Q Consensus 88 ~l~~~~~-----~g~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~-s~~---~d~~v~iwd~~~~~~~~ 153 (579)
+.++-+. ++.|.+||+.+++.+..+.- .+...+.++++++++..++ +.. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 4444333 47899999999986654421 1234568999998655554 444 57899999998887666
Q ss_pred EeecCC-----------------------------CCeeEEEEccCCCEEEEEC---CeEEEEECC---CC-----eeeE
Q 008041 154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DH-----KKMQ 193 (579)
Q Consensus 154 ~~~~~~-----------------------------~~v~~l~~~p~g~~l~~~~---~~i~vwd~~---~~-----~~~~ 193 (579)
.+.+|. ..+..|+|+|+|+.|+.+. +.++.++.. .+ +...
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 553321 2358899999999888776 466666532 11 0000
Q ss_pred --EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041 194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 194 --~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
...++......++++++|..+++.. .++.|.+||..+++.. .+.... .......+++. +++.++++.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~ 309 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN 309 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence 1223445567799999998777765 6889999998444321 122211 13345566776 7777777766
Q ss_pred cCCeEEEE
Q 008041 272 ETGVCYIW 279 (579)
Q Consensus 272 ~dg~i~iw 279 (579)
..+.+.+|
T Consensus 310 ~~~~~~~f 317 (343)
T 2qe8_A 310 QLHHSAPL 317 (343)
T ss_dssp CGGGSGGG
T ss_pred cccccccc
Confidence 55544444
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=2.7e-08 Score=107.06 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=127.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+..+............... .... .... .+..+++++.+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~g~v~v~~~dg 131 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCD----AVNR--GVAV------------WKGKVYVGVLDG 131 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------ETTEEEEECTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccccccc----CCCC--ccEE------------ECCEEEEEccCC
Confidence 456777788899999999999999988643221100000000 0000 0000 156789999999
Q ss_pred eEEEEEccCCeEEEEecCC-CCCCEEEEEEcc---CCCEEEEEe------CCCcEEEEeCCCCceeeEeecCC-------
Q 008041 97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST------- 159 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~---~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~------- 159 (579)
.|+.+|..+|+.+++.... +......+..+| ++ .++.++ .++.|+.||..+|+.+..+....
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 9999999999998877543 211111111112 44 444443 37899999999999988765211
Q ss_pred ------------------------CCeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEE
Q 008041 160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (579)
Q Consensus 160 ------------------------~~v~~l~~~p~g~~l~~~~--~-------------------~i~vwd~~~~~~~~~ 194 (579)
.....++++|++.+++.+. + .|..||.++|+.+..
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0112578899888888876 3 399999999999887
Q ss_pred eec--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 195 ~~~--h~-------~~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
++. |. .++.......+|+ .++.++ .+|.++++|..+++..
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL 342 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence 764 21 2222223334665 566655 7999999999998754
No 223
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.10 E-value=1.6e-08 Score=93.87 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=133.5
Q ss_pred EEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fspdg~~lasg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++|+|||.++++.+. ++.|+++|..+++.+..+.-... .| . .-+.+. ++.+
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-----~f---------g---eGi~~~----------g~~l 78 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-----YF---------G---EGLTLL----------NEKL 78 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-----CC---------E---EEEEEE----------TTEE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-----cc---------e---EEEEEe----------CCEE
Confidence 389998755555443 57999999999999887642110 00 0 001111 1333
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS 163 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~ 163 (579)
.++.-.++.+.++|..+.+.+.++..+ ... ...+++||+.++.+..+++|.++|..+.+.+..+.... ..++
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 444445688999999999988777433 111 23355688888877788999999999998888766422 1467
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
.+.|. +|..++... +.|.+.|..+++.+.++.-. ....+.|+|+|+++.+++++...+.+.+.+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 776666554 89999999999998887521 135689999999987777776778888888
Q ss_pred cCCC
Q 008041 229 TDGV 232 (579)
Q Consensus 229 ~~~~ 232 (579)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7654
No 224
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=2e-08 Score=102.72 Aligned_cols=240 Identities=9% Similarity=0.018 Sum_probs=155.6
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcEEEEE
Q 008041 15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (579)
Q Consensus 15 pdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (579)
+||+++..+.. +++|.+.|+.+.++...+.-.. ..+..+.+ ... + ++.+++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~------------------~~~-p------~~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRP------------------QKW-P------RSNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEE------------------CCS-S------BCSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceee------------------eec-C------CCcEEEEe
Confidence 48888887765 5679999999999888553221 11111111 100 0 15555555
Q ss_pred E------------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---------------
Q 008041 93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------------- 139 (579)
Q Consensus 93 ~------------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~--------------- 139 (579)
+ .++.+.+.|..+.+..+++.-+- ....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 3 23469999999999888875432 346677999999988887543
Q ss_pred -----------------------cEEEEeCCC--Cce-eeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe
Q 008041 140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK 190 (579)
Q Consensus 140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~ 190 (579)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ ++|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 477788776 544 445543 23568899999999999988 799999998653
Q ss_pred ------------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc------cccceeeeeeecCceeEEe
Q 008041 191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK------KQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 191 ------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~ 252 (579)
.+.+.. -......++|+|+| +++++..-|+.|.+||+.... .. ...+..+.-+-..-..
T Consensus 311 ~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yqpGh~ 387 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQPGHL 387 (595)
T ss_dssp HHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSCEEEE
T ss_pred cccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccccccc
Confidence 233333 22456889999999 777777789999999987621 10 1133333333222111
Q ss_pred EEecCCcccCCCcEEEEEEc-C-CeE-----------EEEEcCCce
Q 008041 253 RCIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE 285 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~-d-g~i-----------~iwd~~~~~ 285 (579)
........+|||++|++.+. . .++ .++|+..++
T Consensus 388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 11122334599999999965 1 234 889985543
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.10 E-value=1.5e-09 Score=107.03 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=114.8
Q ss_pred CcEEEEEECCCeEEEEEccCCe---------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
..++++|+.+ .+.+|++.... ........+.. |+.++| |+++++++ .++.|++||+.+........
T Consensus 49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~ 123 (388)
T 1xip_A 49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT 123 (388)
T ss_dssp TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE
T ss_pred CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc
Confidence 6677777776 55569976433 11111123666 999999 89999998 88999999998877666677
Q ss_pred cCCCCeeEEEEccCCCEEEEE-C-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 157 ASTKGISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 157 ~~~~~v~~l~~~p~g~~l~~~-~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
.+...+.++.+.+.. ++++ . |.|.+||+.+++... +...|++++|+|+| ++.+. .||.+++|+......
T Consensus 124 ~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 124 SFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KDRSFQSFAWRNGEM 194 (388)
T ss_dssp ECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TTSCEEEEEEETTEE
T ss_pred eeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cCCcEEEEcCCCccc
Confidence 777888888877653 4444 3 999999999887643 44689999999999 45565 799999998877652
Q ss_pred ccceeeeee------e---cCceeEEeEEecCCcccCCCcEEEEE
Q 008041 235 QSASCVLAM------E---HPAVFMDCRCIDNGGVDDAGLYVLAI 270 (579)
Q Consensus 235 ~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (579)
.. ...+ . .+...+..+.|. +++.++++=
T Consensus 195 ~~---k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y 231 (388)
T 1xip_A 195 EK---QFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVF 231 (388)
T ss_dssp EE---EEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEE
T ss_pred cc---cceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEE
Confidence 10 1112 1 134555666666 777877753
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=120.61 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=103.1
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-Cee-
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS- 163 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~v~- 163 (579)
+..+++++.+|.|+.||..+|+.++++.. +++.+..+..++..+++++.|+.|+.||..+|+.+..+..+.. .+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 77899999999999999999999988743 4555555666787788888999999999999988766653321 110
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+..+. ++..+++++ +.++.||.++|+.+.++..+. ...++|++..+++++ .|+.|+.||..+++..- .+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W---~~ 156 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELRW---NA 156 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCCC---EE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEEE---eE
Confidence 11111 233455544 899999999999888776553 234567778888877 68999999999887541 11
Q ss_pred eeecCceeEEeEEecCCcccCCC---cEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
... . .....+. ++. ..+++++.||.++.||..+++.+...
T Consensus 157 ~~~--~--~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 157 TYF--D--YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEE--E--ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred ecc--c--ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 111 1 1111111 221 45777899999999999999876543
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=8.7e-09 Score=99.58 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=131.9
Q ss_pred EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fspdg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.+|+|+|+ +++++..++.|..|+. ++.. ..+..+...+ ..+.|.+. +.++
T Consensus 50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~------------------~gl~~d~d---------G~l~ 100 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFT------------------NGNAVDAQ---------QRLV 100 (305)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCE------------------EEEEECTT---------SCEE
T ss_pred CeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCcc------------------ceeeECCC---------CCEE
Confidence 47999999 4556666889999998 4543 2333222222 22333321 5544
Q ss_pred EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCC
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPLTG 149 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s----~~~-------------d~~v~iwd~~~~ 149 (579)
+....++.|.+|+.. ++...... .+ ....+.++++.|+|+.+++ |.. .+.|+.||..++
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g 179 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS 179 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence 443445789999986 55421111 11 1234678999999997775 321 256888887777
Q ss_pred ceeeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCee--eEEe-ecCCCCEEEEEEecCCCEEEEEe
Q 008041 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~--~~~~-~~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
+..... .......++|+|||+.|+.+. +.|++|++..+.. ...+ ....+....+.++++|++.++ +
T Consensus 180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~ 256 (305)
T 3dr2_A 180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-S 256 (305)
T ss_dssp CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-C
T ss_pred cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-c
Confidence 654433 344678899999999776654 3799999876541 1112 112344567899999985443 3
Q ss_pred cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
.+ .|.+|+..... ...+..+. ....++|. ++++.|..++.++
T Consensus 257 -~~-gv~~~~~~g~~------~~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~ 298 (305)
T 3dr2_A 257 -GT-GVCVFDSDGQL------LGHIPTPG-TASNCTFD-----QAQQRLFITGGPC 298 (305)
T ss_dssp -SS-EEEEECTTSCE------EEEEECSS-CCCEEEEC-----TTSCEEEEEETTE
T ss_pred -CC-cEEEECCCCCE------EEEEECCC-ceeEEEEe-----CCCCEEEEEcCCe
Confidence 34 49999985332 12233333 24556676 8888888887754
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.08 E-value=5.4e-08 Score=97.01 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=143.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..+..++.++.|..+|..+|+....+........ ... .... +...+.. .+..+++++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~~-----~~~~---~~~~~~~-------~~~~v~v~~~~ 112 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FSK-----EPAL---LSGGVTV-------SGGHVYIGSEK 112 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CSC-----CCCC---EEEEEEE-------ETTEEEEEETT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----ccc-----cCcc---cccCceE-------eCCEEEEEcCC
Confidence 356777888899999999999998877653221000 000 0000 0000000 15678899999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~ 170 (579)
+.|..+|..+|+..++.... ......... .+..++.++.++.|..+|..+|+.+..+....... ...... +
T Consensus 113 g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVA-GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEECS-SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred CEEEEEECCCCCEEEEEeCC-CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence 99999999999988776422 111111122 24478888899999999999999888766432211 222222 4
Q ss_pred CCEEEEEC--CeEEEEECCCCeeeEEeecCCCC----------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 171 g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~~~----------v-~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
+ .++.+. +.+..+|..+++.+......... + ..... .+..++.++ .++.+..+|..+++..
T Consensus 189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence 4 445554 89999999999887766532110 1 11111 234566665 6899999999988643
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
....... ..... .++..+++++.+|.+..+|..+++.+...
T Consensus 263 ---w~~~~~~--~~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 263 ---WKRELGS--VNDFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ---EEECCCC--EEEEE-------EETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred ---eeccCCC--CCCce-------EECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 2222211 11122 24567888889999999999999876443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=8.6e-08 Score=102.97 Aligned_cols=199 Identities=11% Similarity=0.099 Sum_probs=128.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+.++..............+ ... ..... .+..+++++.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~---~~~a~-----------~~~~v~v~~~dg 138 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD----VVN---RGVAL-----------WKGKVYVGAWDG 138 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC----SCC---CCCEE-----------ETTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccc----CCC---CCceE-----------ECCEEEEEcCCC
Confidence 445667777899999999999999888643221100000000 000 00000 156789999999
Q ss_pred eEEEEEccCCeEEEEecCCCC----CCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC-----
Q 008041 97 DVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG----- 161 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~----- 161 (579)
.|+.+|..+|+.++++..... ..+.+--.- .+..++.++. ++.|+.||..+|+.+..+......
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 999999999999888743201 112111011 2345555543 799999999999998877642211
Q ss_pred ---------------------------eeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeE
Q 008041 162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ 193 (579)
Q Consensus 162 ---------------------------v~~l~~~p~g~~l~~~~--~-------------------~i~vwd~~~~~~~~ 193 (579)
...++++|++..++.+. + .|..+|.++|+.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 13578899888888776 2 49999999999988
Q ss_pred Eeec--CC-------CCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccc
Q 008041 194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 194 ~~~~--h~-------~~v~~l~~s~~~---~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.++. |. .....+....+| +.++.++ .+|.++++|..+++..
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence 7753 21 122233444577 5666665 7999999999998754
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.04 E-value=6e-08 Score=96.67 Aligned_cols=224 Identities=16% Similarity=0.135 Sum_probs=143.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECC
Q 008041 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (579)
Q Consensus 16 dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (579)
++..+..++.++.|..+|..+|+....+...... .+.+ . . .+..+++++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~p------------~-~-----------~~~~v~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-----LSRP------------V-V-----------SDGLVLIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-----CSCC------------E-E-----------ETTEEEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-----EcCC------------E-E-----------ECCEEEEEcCC
Confidence 4567778888999999999999988776532210 0000 0 0 04568889999
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCE------EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-------- 161 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V------~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-------- 161 (579)
|.|..+|..+|+.+++.... .++ ..... .+..++.++.++.+..+|..+|+.+..+......
T Consensus 153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--C-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 99999999999988776421 111 11122 2456788888999999999999988776532110
Q ss_pred --eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 162 --ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 162 --v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
+.......++.+++.+. +.+..+|.++++.+.... ......+... +..++.++ .++.+..+|..+++..
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~--~~~l~~~~-~~g~l~~~d~~tG~~~--- 300 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVD--GNRIYLVD-QNDRVMALTIDGGVTL--- 300 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEE--TTEEEEEE-TTCCEEEEETTTCCEE---
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEE--CCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 11111111444444443 899999999998876654 2334444443 45666666 6889999999988643
Q ss_pred eeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecc
Q 008041 239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (579)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (579)
.... ........... .+..|++++.+|.++.||..+++.+..
T Consensus 301 --w~~~~~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 301 --WTQSDLLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp --EEECTTTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred --EeecccCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 2222 11111111111 346788899999999999999987654
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.03 E-value=7.1e-08 Score=93.13 Aligned_cols=180 Identities=13% Similarity=0.060 Sum_probs=113.4
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v 162 (579)
.+++++..++.|..|+. +++.. .+ ..+...+.+++++++|+.+++...++.|..||.. ++........ ...+
T Consensus 58 ~l~~~d~~~~~i~~~~~-~g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWRE-DGTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP 133 (305)
T ss_dssp EEEEEETTTTEEEEEET-TSCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred EEEEEECCCCEEEEEeC-CCCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence 36777778889999998 45432 22 2355679999999999866655566889999975 6533222111 1356
Q ss_pred eEEEEccCCCEEEE----EC---------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC---
Q 008041 163 SCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--- 220 (579)
Q Consensus 163 ~~l~~~p~g~~l~~----~~---------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~--- 220 (579)
..++++|+|+++++ |. +.|+.||..+++..... .......++|+||++.|+.+...
T Consensus 134 ~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 78999999998886 21 46788887666644332 34556889999999987776533
Q ss_pred --CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 221 --ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 221 --d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
++.|.+|++...... ....+. .........+.++ ++|++ .+++.+ .|.+|+.
T Consensus 212 ~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~l-wv~~~~-gv~~~~~ 265 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWL-WSSSGT-GVCVFDS 265 (305)
T ss_dssp -CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCE-EECCSS-EEEEECT
T ss_pred CCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCE-EEecCC-cEEEECC
Confidence 268999998765311 011111 1111222344554 77774 333433 4777765
No 232
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=4.3e-08 Score=105.19 Aligned_cols=240 Identities=19% Similarity=0.235 Sum_probs=154.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC--
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-- 94 (579)
+..++.++.|+.|..+|..+|+.+..+............+.+ +. .+..++++..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v------------~~~~v~vg~~~~ 172 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP------------RV------------VKGKVIIGNGGA 172 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC------------EE------------ETTEEEECCBCT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC------------EE------------ECCEEEEeCCCC
Confidence 457778888999999999999999887642211000000000 00 0344566654
Q ss_pred ----CCeEEEEEccCCeEEEEecCC--CC----------------------------CCEEEEEEccCCCEEEEEeCCC-
Q 008041 95 ----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG- 139 (579)
Q Consensus 95 ----~g~i~iwd~~~~~~~~~~~~~--h~----------------------------~~V~~l~~~~~~~~l~s~~~d~- 139 (579)
+|.|+.+|..+|+.++++... .. .....+++.|++..++.++.++
T Consensus 173 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred CcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 488999999999998877421 10 0112467888888888887766
Q ss_pred ------------------cEEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEEECC
Q 008041 140 ------------------MVCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTFNCS 187 (579)
Q Consensus 140 ------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--~~i~vwd~~ 187 (579)
.|..+|..+|+.+..++.. . .++....+..+|+ .++.++ |.++++|..
T Consensus 253 ~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~ 332 (668)
T 1kv9_A 253 PWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT 332 (668)
T ss_dssp SSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred ccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC
Confidence 3999999999998887642 1 2233333444675 566666 899999999
Q ss_pred CCeeeEEeecCCC------------C------------------------EEEEEEecCCCEEEEEe-------------
Q 008041 188 DHKKMQKFSGHPG------------A------------------------VRFMTFSDNGKYVLSSA------------- 218 (579)
Q Consensus 188 ~~~~~~~~~~h~~------------~------------------------v~~l~~s~~~~~l~s~~------------- 218 (579)
+|+.+........ + -..++++|+...++...
T Consensus 333 tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 412 (668)
T 1kv9_A 333 NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKD 412 (668)
T ss_dssp TCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGG
T ss_pred CCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccc
Confidence 9998744322110 0 01267788766655421
Q ss_pred ----------------------cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeE
Q 008041 219 ----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (579)
Q Consensus 219 ----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 276 (579)
..++.|..||+.+++.. ............... ..+..+++++.||.+
T Consensus 413 ~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~vf~g~~dg~l 481 (668)
T 1kv9_A 413 FVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGGTLS------TAGNLVFQGTAAGQM 481 (668)
T ss_dssp CCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCCEEE------ETTTEEEEECTTSEE
T ss_pred cccccccccCccccccCCCCCCCccceEEEEeCCCCcEE-----EEccCCCCCcCceeE------eCCCEEEEECCcccc
Confidence 12478999999988743 232222222211211 456788889999999
Q ss_pred EEEEcCCceeecccC
Q 008041 277 YIWYGQNIEELRNTK 291 (579)
Q Consensus 277 ~iwd~~~~~~~~~~~ 291 (579)
+.||.++++.+...+
T Consensus 482 ~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 482 HAYSADKGEALWQFE 496 (668)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred hhhhhhcChhheEec
Confidence 999999999886553
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.99 E-value=6.8e-09 Score=102.05 Aligned_cols=231 Identities=10% Similarity=-0.003 Sum_probs=143.4
Q ss_pred EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccCc-------cccccccccccccccccccccceEEe
Q 008041 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (579)
Q Consensus 11 ~~fspdg~~lasg~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w 73 (579)
++|||||++++.+. .++.|.+||..+++.+.++.... .....+.++++
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD--------------- 134 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS--------------- 134 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT---------------
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 48999999888876 36889999999999999886331 12333444444
Q ss_pred eecccccccccCCcEEEEEEC--CCeEEE--EEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC
Q 008041 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLA--LAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT 148 (579)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~i--wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~ 148 (579)
+.+++++.. +..|.+ +|+.+ +.++.-+.. ..+.|+|+ .+++.+.|+.+...|+.+
T Consensus 135 ------------Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 135 ------------SACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp ------------SSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred ------------CCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 667788775 356888 99887 333321111 12335443 355666788888889876
Q ss_pred -----Cceee----EeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe--eeEEeec-------C---CCCEEEEE
Q 008041 149 -----GSLLG----KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK--KMQKFSG-------H---PGAVRFMT 206 (579)
Q Consensus 149 -----~~~~~----~~~~~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~--~~~~~~~-------h---~~~v~~l~ 206 (579)
++... .+.....+. . .+++..++..+ +.+.+.|..+.. .+..+.- + ......+.
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 43321 122222333 3 55555554444 899999986542 2222211 0 11122268
Q ss_pred EecCCCEEEEEec---C-----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcE-EEEEE-cCCeE
Q 008041 207 FSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAIS-ETGVC 276 (579)
Q Consensus 207 ~s~~~~~l~s~~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~dg~i 276 (579)
|+|+++.++.+.. . ++.+.++|+.+.+.. ..+.-.. ....+.++ |||++ +++.. .++.|
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-----~~i~vg~-~p~gi~~s-----~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-----GPISNGH-DSDAIIAA-----QDGASDNYANSAGTEVL 339 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-----ECCEEEE-EECEEEEC-----CSSSCEEEEEETTTTEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE-----EEEECCC-CcceEEEC-----CCCCEEEEEccCCCCeE
Confidence 9999998887642 1 235669999998744 2222221 24556676 89985 55555 49999
Q ss_pred EEEEcCCceeecccC
Q 008041 277 YIWYGQNIEELRNTK 291 (579)
Q Consensus 277 ~iwd~~~~~~~~~~~ 291 (579)
.++|..+++.+..++
T Consensus 340 sVID~~t~kvv~~I~ 354 (368)
T 1mda_H 340 DIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEESSSCEEEEECC
T ss_pred EEEECCCCcEEEEEE
Confidence 999999999887654
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.98 E-value=2.5e-07 Score=94.72 Aligned_cols=189 Identities=9% Similarity=0.051 Sum_probs=132.8
Q ss_pred CcEEEEEECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEE-c-cCCCEEEEEe------------------CCCcEEEE
Q 008041 86 SSLLVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------ADGMVCEI 144 (579)
Q Consensus 86 ~~~l~~~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~-~-~~~~~l~s~~------------------~d~~v~iw 144 (579)
+.++++...++ .|.+.|+.+.++...+.-.......++++ + |+++++++++ .++.+.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 66777766654 59999999999876332233456889998 5 9999998884 34579999
Q ss_pred eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------------------------------------eEEEE
Q 008041 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------------------------------------QLKTF 184 (579)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~---------------------------------------~i~vw 184 (579)
|..+.+...++.-.. ....++++|+|+++++++ + .|.+.
T Consensus 181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 999998888877533 457788999999888776 2 26667
Q ss_pred ECCC--Cee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccce-eeeeeecCceeEEeEE
Q 008041 185 NCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSAS-CVLAMEHPAVFMDCRC 254 (579)
Q Consensus 185 d~~~--~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~~~~~ 254 (579)
|.++ ++. +..++.. ....++.++|||+++++++..+.+|.++|+.+.+. .... ......- ..-.....
T Consensus 260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~a 337 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTA 337 (595)
T ss_dssp ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEE
T ss_pred eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEE
Confidence 7776 444 4455432 24577999999999999888889999999986531 0001 1122222 22334566
Q ss_pred ecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041 255 IDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 255 ~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 283 (579)
|+ |+| ++.+.. .|++|.+||+++
T Consensus 338 F~-----~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 338 FD-----GRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EC-----TTS-EEEEEETTTTEEEEEEHHH
T ss_pred EC-----CCC-eEEEEEecCCcEEEEEhhH
Confidence 76 999 555554 499999999877
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.93 E-value=6.4e-08 Score=95.60 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=130.9
Q ss_pred CcEEEEEECCCeEEEEEccCC----eEEEEec------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~----~~~~~~~------~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~ 149 (579)
..+++.+..++.|+++|+.+. +....+. +........+...|+| .++++..+ +.|.++|..++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 445666777788999999765 5554441 1011245667888999 77776655 78999999999
Q ss_pred ceeeEeecCCC---CeeEEEEccCCCEEEEE---------------------CCeEEEEECCCCeeeEEeecC-C-CCEE
Q 008041 150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR 203 (579)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~~~---------------------~~~i~vwd~~~~~~~~~~~~h-~-~~v~ 203 (579)
+.+.++..... --+.+.|+|+++.+++. +++|.+||+.+++.+.++.-. . ....
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 99998874322 23457889999999988 379999999999888887642 1 2345
Q ss_pred EEEE--ecCCCEEEEEec-----CCCeEEEEEcCCCccccceeeeeeecC----------------ceeEEeEEecCCcc
Q 008041 204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV 260 (579)
Q Consensus 204 ~l~~--s~~~~~l~s~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 260 (579)
.+.| +|+++++++++. .+++|.+|....++... ..+..+... ......+.++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---- 329 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA-EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS---- 329 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE-EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE-EEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence 6666 999999988886 67789887776543211 011101100 1223445565
Q ss_pred cCCCcEEEEEEc-CCeEEEEEcC
Q 008041 261 DDAGLYVLAISE-TGVCYIWYGQ 282 (579)
Q Consensus 261 ~~~~~~l~~~~~-dg~i~iwd~~ 282 (579)
+||++|.++.. .+.|.+||+.
T Consensus 330 -~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 330 -LDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp -TTSCEEEEEETTTTEEEEEECS
T ss_pred -CCCCEEEEEeCCCCEEEEEEec
Confidence 99999998876 7899999985
No 236
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.90 E-value=4.1e-07 Score=95.53 Aligned_cols=245 Identities=13% Similarity=0.104 Sum_probs=151.5
Q ss_pred EEccCCCE----EEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 12 ~fspdg~~----lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
+++|.+.. ++.++.|+.|.-+|..+|+.+...............+.+ +.. +.
T Consensus 112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP------------~v~------------~g 167 (599)
T 1w6s_A 112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YVV------------KD 167 (599)
T ss_dssp EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TT
T ss_pred EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC------------EEE------------CC
Confidence 55554444 778888999999999999998876532211000001111 000 34
Q ss_pred EEEEEEC------CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEE
Q 008041 88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS 124 (579)
Q Consensus 88 ~l~~~~~------~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~ 124 (579)
.+++++. +|.|+.+|..+|+.++++...... .+ ...+
T Consensus 168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a 247 (599)
T 1w6s_A 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (599)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence 4666653 789999999999998876432110 01 1345
Q ss_pred EccCCCEEEEEeCC----------------CcEEEEeCCCCceeeEeecCCC---------CeeEEEEc-cCC---CEEE
Q 008041 125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDG---KMLA 175 (579)
Q Consensus 125 ~~~~~~~l~s~~~d----------------~~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~-p~g---~~l~ 175 (579)
+.++...++.+..+ +.|..+|..+|+.+..++.... ...-+... .+| +.++
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~ 327 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT 327 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence 66777788877665 3799999999999888765321 11112222 567 4566
Q ss_pred EEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEE
Q 008041 176 TAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYV 214 (579)
Q Consensus 176 ~~~--~~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~s~~~~~l 214 (579)
.++ |.++++|.++|+.+....-.. .++ ..++++|+...+
T Consensus 328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~ 407 (599)
T 1w6s_A 328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF 407 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence 665 899999999999877654211 111 245677776665
Q ss_pred EEEec--------------------------------------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEec
Q 008041 215 LSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256 (579)
Q Consensus 215 ~s~~~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (579)
++... .++.|..||+.+++.. ...............
T Consensus 408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~~~- 481 (599)
T 1w6s_A 408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGTMA- 481 (599)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE-
T ss_pred EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-----eEecCCCCccCcceE-
Confidence 55320 2367888888877643 222221111111111
Q ss_pred CCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
..+..++.++.||.++.||.++|+.+...+
T Consensus 482 -----tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 -----TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp -----ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -----ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 256777789999999999999999886553
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=1.7e-07 Score=85.96 Aligned_cols=173 Identities=8% Similarity=0.077 Sum_probs=119.8
Q ss_pred EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fspdg~~lasg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|+ ++.++.+.+.+| .|+++|.++|+....+..... .|.. . +... +..+
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~Fge---------G---it~~-----------g~~l 99 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YFGE---------G---ISDW-----------KDKI 99 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CCEE---------E---EEEE-----------TTEE
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----ccee---------E---EEEe-----------CCEE
Confidence 677 676666777665 899999999999887752110 0100 0 0000 3334
Q ss_pred EEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008041 90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS 163 (579)
Q Consensus 90 ~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~ 163 (579)
+..+ .++.+.+||..+.+.+.++..+..+ ++++ ++++.++.+..++.|.++|..+.+.+.++.... ..++
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 4444 5788999999999998777532211 3343 577777777667889999999999888866422 2345
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEe
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~s~~~~~l~s~~ 218 (579)
.+.|. +|++.+..- +.|.+.|.++++.+..+.-. ....+.|+|+|+++.|+.+|
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 67776 787666554 89999999999998887532 13468999999988887776
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.89 E-value=4.8e-07 Score=95.00 Aligned_cols=240 Identities=15% Similarity=0.135 Sum_probs=150.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC--
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-- 94 (579)
+..++.++.|+.|..+|..+|+.+..+............+.+ +. .+..+++++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v------------~~g~v~vg~~~~ 170 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FV------------AKDTVLMGCSGA 170 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EE------------ETTEEEEECBCG
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC------------EE------------ECCEEEEEecCC
Confidence 557777888999999999999998876532210000000000 00 0345666665
Q ss_pred ----CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEEEccCCCEEE
Q 008041 95 ----GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAISFATHGSCIY 133 (579)
Q Consensus 95 ----~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~~~~~~~~l~ 133 (579)
+|.|+.+|..+|+.++++...... .+ ..+++.++...++
T Consensus 171 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy 250 (571)
T 2ad6_A 171 ELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY 250 (571)
T ss_dssp GGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE
T ss_pred ccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE
Confidence 789999999999998876422110 00 1356667666777
Q ss_pred EEeCC----------------CcEEEEeCCCCceeeEeecCC---------CCeeEEEEccCCC---EEEEEC--CeEEE
Q 008041 134 SAGAD----------------GMVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKT 183 (579)
Q Consensus 134 s~~~d----------------~~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g~---~l~~~~--~~i~v 183 (579)
.++.+ +.|..+|..+|+.+..++... ....-+...++|+ .++.++ |.+++
T Consensus 251 ~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~ 330 (571)
T 2ad6_A 251 YGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYT 330 (571)
T ss_dssp EECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEE
T ss_pred EECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEE
Confidence 66532 359999999999988876421 1111223335774 556666 89999
Q ss_pred EECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEEEEEec-----
Q 008041 184 FNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV----- 219 (579)
Q Consensus 184 wd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~s~~~~~l~s~~~----- 219 (579)
+|..+|+.+..+.-.. .++ ..++|+|++..+++.+.
T Consensus 331 lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 410 (571)
T 2ad6_A 331 LNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMD 410 (571)
T ss_dssp EETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE
T ss_pred EECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccc
Confidence 9999999877654221 111 24578888777766541
Q ss_pred -------------------------------CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEE
Q 008041 220 -------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (579)
Q Consensus 220 -------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (579)
.++.|..||+.+++.. ............... ..+..++
T Consensus 411 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~v~ 479 (571)
T 2ad6_A 411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLVW 479 (571)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEEE
T ss_pred ccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-----EEecCCCCccceeEE------ECCCEEE
Confidence 2478889998887643 222222211111111 2456777
Q ss_pred EEEcCCeEEEEEcCCceeecccC
Q 008041 269 AISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
+++.||.++.||.++++.+..++
T Consensus 480 ~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 480 YATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCeEEEEECCCCCEEEEEe
Confidence 79999999999999999876543
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.88 E-value=9.4e-08 Score=103.48 Aligned_cols=186 Identities=12% Similarity=0.047 Sum_probs=120.7
Q ss_pred CcEEEEEE-CCC----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008041 86 SSLLVLGT-GGG----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~-~~g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-------------v~iwd~~ 147 (579)
+++++.+. ..| .|++||+.+++.+.....+. ...+++|+ ||+.|+.++.+.. |++|++.
T Consensus 140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg 216 (693)
T 3iuj_A 140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG 216 (693)
T ss_dssp SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence 56566543 233 59999999998754322211 12567899 9999988887743 9999998
Q ss_pred CCce--eeEee--c-CCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEE
Q 008041 148 TGSL--LGKFR--A-STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVL 215 (579)
Q Consensus 148 ~~~~--~~~~~--~-~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~ 215 (579)
++.. ...+. . +...+.++.|+|||++++... +.|+++|+.++. ....+..+....... ++++|..|+
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY 295 (693)
T ss_dssp SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence 7643 22333 2 344578899999999886543 489999998763 455666666665555 667776666
Q ss_pred EEecCC---CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CC--eEEEEEcCCce
Q 008041 216 SSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIE 285 (579)
Q Consensus 216 s~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~ 285 (579)
..+..+ +.|..|++.++....... ...+....+ .++ +++++|+.... +| .|++|++..+.
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~---~~s-----~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQVL---TVH-----SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCE---EEE-----EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCEE---EEE-----EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 555333 579999998765321111 123333333 455 77887777665 44 78999987543
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=1.6e-07 Score=91.55 Aligned_cols=249 Identities=16% Similarity=0.199 Sum_probs=157.4
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc--ccccceEEeeeccccccccc-----
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL--SVDYTCMKWLSVDRKKKRKL----- 84 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~----- 84 (579)
.++.+|. +..++.++.|..|| .+++....+......+.......+ +.+ .... ...+.+ +.+.....
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~---g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKD---GTIYFGSDK-VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTT---TEECCSSCE-EEEECC-CGGGGGGSCC---
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecC---CcEEEecCc-EEEECC-CCcEEEEEECCCC
Confidence 4555664 55566788899999 888877655433222222222211 111 0011 222222 21111111
Q ss_pred -------CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 85 -------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 85 -------~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
.+..+.+++.++.|..+|.. ++..+... .+...+.++...+++. ++.++.++.|..+|.. ++....+..
T Consensus 99 ~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 99 IVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp --CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred cccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 14568888889999999998 77766553 2344566667777776 6667788999999988 887777776
Q ss_pred CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
....+.++.+.++|.+.+.. +.|..|| .+++.+..+......+.++...++|...+ ++ .++.+..++... +..
T Consensus 175 ~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-~~~gl~~~~~~g-~~~-- 247 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TS-LDGHLYAINPDG-TEK-- 247 (330)
T ss_dssp SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EE-TTTEEEEECTTS-CEE--
T ss_pred CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-Ec-CCCeEEEECCCC-CEe--
Confidence 66678888888899887777 9999999 78877777765666788888988886554 44 578888887433 211
Q ss_pred eeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
................ +++ .|.+++.+|.+..||. +++.+.
T Consensus 248 ---~~~~~~~~~~~~~~~~-----~~g-~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 248 ---WRFKTGKRIESSPVIG-----NTD-TIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp ---EEEECSSCCCSCCEEC-----TTS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred ---EEeeCCCCccccceEc-----CCC-eEEEecCCCCEEEECC-CCcEEE
Confidence 2222222222223332 344 5777888989999995 565543
No 241
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=9.9e-08 Score=93.77 Aligned_cols=125 Identities=10% Similarity=-0.040 Sum_probs=91.6
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCceeeEeecC-------C
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS-------T 159 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~-------~ 159 (579)
.|.++|..+++.+.++..+.. + .+.|+|||++++++. .++.|.+||+.+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 789999999999988865553 5 799999999998886 3788999999999999998644 1
Q ss_pred CCeeEEEEccCCCEEEEEC----CeEEE--EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~----~~i~v--wd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
.....++++|||++++++. +.+.+ +|..+ +.++.-- +. ..+.|+++..+.+.+.|+.+.+.++..
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 2467899999999998874 47888 88877 4444311 11 123455543333333688888888876
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=4.2e-07 Score=88.48 Aligned_cols=216 Identities=18% Similarity=0.231 Sum_probs=139.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..+..++.++.|..+|.. |+....+......+...... ....+.+++.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~----------------------------~~g~l~vgt~~~ 157 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS----------------------------EDGTIYVGSNDN 157 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC----------------------------TTSCEEEECTTS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc----------------------------CCCEEEEEcCCC
Confidence 3455566667778888877 66655544222111111100 033477888889
Q ss_pred eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008041 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~ 176 (579)
.|..||.. ++..+... .....+.++.+.+++.. +.++ +.|..+| .+++....+......+.++...++|.+.+.
T Consensus 158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~ 231 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFK-TNDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT 231 (330)
T ss_dssp EEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred EEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence 99999999 77765553 23455677777777764 4454 8899999 788877777666667889999999888777
Q ss_pred EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEe
Q 008041 177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (579)
Q Consensus 177 ~~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (579)
.. +.+..+| .+++.+..+......+..+.+.+++.. ..++ .++.|..+|. +++.. .........+.....
T Consensus 232 t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~ 302 (330)
T 3hxj_A 232 SLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTI-YFGS-YDGHLYAINP-DGTEK-----WNFETGSWIIATPVI 302 (330)
T ss_dssp ETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCE-EEEC-TTCEEEEECT-TSCEE-----EEEECSSCCCSCCEE
T ss_pred cCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeE-EEec-CCCCEEEECC-CCcEE-----EEEEcCCccccceEE
Confidence 76 8888887 466666666655444555666667754 4454 5778999985 44322 222233333444444
Q ss_pred cCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 256 DNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
. ++|. |..++.+|.+++...+
T Consensus 303 d-----~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 303 D-----ENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp C-----TTCC-EEEECTTSCEEEEEC-
T ss_pred c-----CCCE-EEEEcCCCeEEEEecc
Confidence 3 4555 6678899999988654
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.85 E-value=2.6e-07 Score=90.78 Aligned_cols=188 Identities=10% Similarity=0.110 Sum_probs=117.1
Q ss_pred eEEEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 9 l~~~fspdg~~lasg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..++|+++|+++++-.. ++.|.+||..+++.+..+........ + ......+.+.+.
T Consensus 70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~-----------~-~~~~~~v~vd~~------- 130 (343)
T 2qe8_A 70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITL-----------S-NSFVNDLAVDLI------- 130 (343)
T ss_dssp EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSC-----------T-TCCCCEEEEETT-------
T ss_pred eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcc-----------c-ccccceEEEecC-------
Confidence 55699999986665433 57899999999997776643211000 0 001122333321
Q ss_pred cCCcEEEEEE----CCCeEEEEEccCCeEEEEecCCCC-----------------------------CCEEEEEEccCCC
Q 008041 84 LGSSLLVLGT----GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGS 130 (579)
Q Consensus 84 ~~~~~l~~~~----~~g~i~iwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~~~~~~ 130 (579)
+..++++. .++.|.+||+.+++....+ .+|. ..+.+++|+|+|+
T Consensus 131 --~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~ 207 (343)
T 2qe8_A 131 --HNFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE 207 (343)
T ss_dssp --TTEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred --CCEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence 23344443 4678999999888765333 2221 2368999999999
Q ss_pred EEEEEeCCC-cEEEEeCC---CCc-----eee--EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008041 131 CIYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (579)
Q Consensus 131 ~l~s~~~d~-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~ 197 (579)
.++.+..++ .++.++.. .+. ... ...++......++++++|.++++.. +.|.+||..+++.......
T Consensus 208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~ 287 (343)
T 2qe8_A 208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD 287 (343)
T ss_dssp EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence 988887666 55555531 111 001 1112334567899999998888776 7999999866664332221
Q ss_pred -CCCCEEEEEEecCCCEEEEEe
Q 008041 198 -HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 198 -h~~~v~~l~~s~~~~~l~s~~ 218 (579)
+...+.+++|.++++.+++.+
T Consensus 288 ~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 288 EKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp GGGSCEEEEEECTTSCEEEEEC
T ss_pred CceecCCeeEECCCCcEEEEeC
Confidence 245688999999988777665
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=4.7e-06 Score=78.44 Aligned_cols=190 Identities=9% Similarity=-0.023 Sum_probs=117.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++++-...+.|..+++..+... .+.........++++++++..++.+ ...+.|.++++..................
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~ 126 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG 126 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEECCCCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE
Confidence 334444445678999999876543 2222233568999999976666555 45678999998643322222222246789
Q ss_pred EEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 165 MAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 165 l~~~p~g~~l~~~~-----~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
++++|++..+..+. +.|..++.... ....+. ........+++++++..|+.+....+.|.++++......
T Consensus 127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--- 202 (267)
T 1npe_A 127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--- 202 (267)
T ss_dssp EEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred EEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE---
Confidence 99999655544433 47888887643 233332 233457899999988877776667789999998764322
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceeeccc
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 290 (579)
... ...... ..++. ++..|.++. ..+.|..+|..+++.+..+
T Consensus 203 ~~~--~~~~~P-~gi~~-------d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 203 KVL--EGLQYP-FAVTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEE--ECCCSE-EEEEE-------ETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEe--cCCCCc-eEEEE-------eCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 111 111112 22232 345555555 4689999999988776544
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=2e-06 Score=78.09 Aligned_cols=174 Identities=10% Similarity=0.145 Sum_probs=119.4
Q ss_pred EEccCCCEEEEEeCC--CcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 12 ~fspdg~~lasg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.|++ +.++.+.+.+ ..|+++|..+|+....+.-... .|.. .. ... ++.+.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-----~fge---------Gi---~~~----------~~~ly 78 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-----YFGA---------GI---VAW----------RDRLI 78 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-----CCEE---------EE---EEE----------TTEEE
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-----ccee---------EE---EEe----------CCEEE
Confidence 6776 5555566654 4899999999999887742211 0100 00 000 13444
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (579)
.+.-.++.+.+||..+.+.+.++..+.. =++++ ++++.++.+..++.|.++|..+.+.+.++.... ..++.
T Consensus 79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTPRARFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCcEEEEEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 5555678899999999999887753322 24554 467777777778899999999998888776432 24566
Q ss_pred EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008041 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 165 l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~~~~l~s~~ 218 (579)
+.+. +|+.++..- +.|.+.|.++++.+..+.-. ....+.|+++|+++.|+.+|
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 7766 777666653 89999999999998877511 13568899999888777766
No 246
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=1.9e-06 Score=90.57 Aligned_cols=244 Identities=18% Similarity=0.141 Sum_probs=147.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc-EEEEEEC-
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG- 94 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~~~~- 94 (579)
+..++.++.|+.|.-+|..+|+....+............+.+ +... +.. ++. .+++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP------------~v~~--~~~-----~G~~~v~vg~~~ 177 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP------------TIVK--DGK-----TGKVLLIHGSSG 177 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC------------EEEE--CTT-----TCCEEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC------------EEeC--CCc-----CCcEEEEEeccc
Confidence 456777888999999999999998877533211000000111 0000 000 011 5666653
Q ss_pred -----CCeEEEEEccCCeEEEEecCCCCCCE-----------------------------------------EEEEEccC
Q 008041 95 -----GGDVLALAVSAGQLKWRLSDCHPGGV-----------------------------------------SAISFATH 128 (579)
Q Consensus 95 -----~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------------------------------~~l~~~~~ 128 (579)
+|.|+.+|..+|+.++..... ...+ ..+++.|+
T Consensus 178 ~e~~~~g~v~alD~~tG~~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~ 256 (582)
T 1flg_A 178 DEFGVVGRLFARDPDTGEEIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE 256 (582)
T ss_dssp GGGCCBCEEEEECTTTCCEEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT
T ss_pred cccCCCCEEEEEECCCCCEEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC
Confidence 688999999999988765321 0000 13456677
Q ss_pred CCEEEEEeC--------------------C----CcEEEEeCCCCceeeEeec--CCC-------CeeEEEEc-cCCC--
Q 008041 129 GSCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRA--STK-------GISCMAVS-SDGK-- 172 (579)
Q Consensus 129 ~~~l~s~~~--------------------d----~~v~iwd~~~~~~~~~~~~--~~~-------~v~~l~~~-p~g~-- 172 (579)
...++.+.. | +.|..+|..+|+.+..++. |.. ...-+... .+|+
T Consensus 257 ~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~ 336 (582)
T 1flg_A 257 TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIV 336 (582)
T ss_dssp TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEE
T ss_pred CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEE
Confidence 777776653 2 5899999999999888754 211 11112222 4674
Q ss_pred -EEEEEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------------EE
Q 008041 173 -MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------------RF 204 (579)
Q Consensus 173 -~l~~~~--~~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~ 204 (579)
.++.++ |.++++|.++|+.+..+.... .++ ..
T Consensus 337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 416 (582)
T 1flg_A 337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP 416 (582)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence 666676 899999999999887664321 000 13
Q ss_pred EEEecCCCEEEEEec--------------------------------CCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041 205 MTFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 205 l~~s~~~~~l~s~~~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (579)
++++|+...+++... .++.|..||+.+++.. ............
T Consensus 417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g 491 (582)
T 1flg_A 417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-----WEHKEHLPLWAG 491 (582)
T ss_dssp CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-----EEEEESSCCCSC
T ss_pred ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-----EEecCCCCCccc
Confidence 456666555544321 2578889999888743 222222111111
Q ss_pred EEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
... ..+..++.++.||.++.||.++|+.+...+
T Consensus 492 ~~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 492 VLA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CEE------ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceE------eCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 111 245678889999999999999999886554
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.72 E-value=1e-06 Score=80.74 Aligned_cols=173 Identities=9% Similarity=0.080 Sum_probs=119.1
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
.|+ ++.++.+.+.+|.|+++|.++|+.+..+ -.. . .|... +.. . ++.+..+
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~----~FgeG------------it~--~--------g~~Ly~l 111 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-N----IFAEG------------LAS--D--------GERLYQL 111 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T----CCEEE------------EEE--C--------SSCEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C----cceeE------------EEE--e--------CCEEEEE
Confidence 666 3556667777889999999999987765 111 0 01100 000 0 1344444
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeEEE
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISCMA 166 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~v~~l~ 166 (579)
.-.++.+.+||..+.+.+.++..+ ..-++++ ++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.
T Consensus 112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 456788999999999998777532 2224444 578888887779999999999999888766422 1456777
Q ss_pred EccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008041 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 167 ~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~~~~l~s~~ 218 (579)
|. +|++++..- +.|.+.|.++++.+.++.-. ....+.|+++|+++.|+.+|
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 77 787666554 89999999999998877421 13568999999877666665
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.71 E-value=7.2e-06 Score=79.58 Aligned_cols=249 Identities=14% Similarity=0.085 Sum_probs=136.1
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccc--ccccccccccceEEeeecccccccccCCcE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
++++++|+++.++..++.|..||..++.... +............... ............+.+.+. ...
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g~ 93 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NNQ 93 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCC---------CCc
Confidence 4899999977788888999999987765432 2210000000000000 000000001123333321 334
Q ss_pred EEEEECCCeEEEEEccCCeEEEEe--cCC-CCCCEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCC
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDPL 147 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~--~~~-h~~~V~~l~~~~-~~~~l~s~~~-----------------d~~v~iwd~~ 147 (579)
|+++...+.|..+|..++...... ..+ ......++++.+ +|+..++-.. ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 677766666888988766432111 111 123578999999 8976665432 3679999987
Q ss_pred CCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecC--
Q 008041 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-- 220 (579)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-- 220 (579)
+++...... .......++++|+|+.++.+. +.|++|++.... ....+....+ ...+++.++|++.++.. .
T Consensus 174 ~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~-~~~ 250 (322)
T 2fp8_A 174 TKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS-EEL 250 (322)
T ss_dssp TTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE-EET
T ss_pred CCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec-Ccc
Confidence 665433222 223457899999999766664 799999987521 1122221223 78899999998766653 2
Q ss_pred --------CCeEEEEEcCCCccccceeeeeeecC--ceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 221 --------ERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 221 --------d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
.+.|..+|.. ++.. ..+..... ......+.+ .++...++...++.|..+++.
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence 3567777764 3211 11221111 122333333 355555555567788888764
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=1e-05 Score=86.79 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=126.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCC
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (579)
+..++.++.++.|.-+|..+|+.+.++............... .... .... .+..+++++.+|
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~~~v~v~~~dg 127 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD----AVNR--GVAL------------WGDKVYVGTLDG 127 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------EBTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcccccccccc----CCcc--ceEE------------ECCEEEEEcCCC
Confidence 446777778899999999999999887643221110000000 0000 0000 156788999999
Q ss_pred eEEEEEccCCeEEEEecCCCC---CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCC------
Q 008041 97 DVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTK------ 160 (579)
Q Consensus 97 ~i~iwd~~~~~~~~~~~~~h~---~~V~~-l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~------ 160 (579)
.|+.+|..+|+.+++...... ..+.+ ..+ .++ .++.++. +|.|+.+|..+|+.+..+.....
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 999999999999887743211 11111 011 134 5555543 58999999999999888753110
Q ss_pred -------------------------CeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEE
Q 008041 161 -------------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (579)
Q Consensus 161 -------------------------~v~~l~~~p~g~~l~~~~--~-------------------~i~vwd~~~~~~~~~ 194 (579)
....++++|++..++.+. + .|..+|.++|+.+..
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 112478888888877775 3 399999999999887
Q ss_pred eec--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 195 ~~~--h~-------~~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
++. |. .+.....+..+|+ .++.++ .+|.++++|..+++..
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence 764 22 3333334445675 466655 7999999999998754
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.65 E-value=3.2e-05 Score=72.65 Aligned_cols=194 Identities=9% Similarity=-0.056 Sum_probs=117.0
Q ss_pred EEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++|+|+++.|..+. .++.|.+++..++.....+..... ....+.+.+.. +.+
T Consensus 40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~------------------~p~~ia~d~~~--------~~l 93 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG------------------SPEGIALDHLG--------RTI 93 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC------------------CEEEEEEETTT--------TEE
T ss_pred EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC------------------CccEEEEEecC--------CeE
Confidence 458898776666554 467899999876543322211000 11233333221 333
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (579)
+++-...+.|.++++...... .+..........++++|++..++.+.. .+.|..+++. +.....+. ........
T Consensus 94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence 444445677999998754332 222222246789999997767666654 3688888875 43333332 23346789
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
++++|++..|..+. +.|.++|.........+.+ ......+++. +..++.+....+.|.++|..+++.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 99999887766665 7999999976544333333 2334566654 456666654678999999987763
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=1.4e-05 Score=74.13 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=123.6
Q ss_pred EEEEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCee
Q 008041 88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGIS 163 (579)
Q Consensus 88 ~l~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~v~ 163 (579)
.++.++. ++.|.++|+.+++.+..+.-+......++++. ++.++.+. .++.+.++|..+++.+.++..... .
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~ 108 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--D 108 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--S
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--C
Confidence 4666654 46799999999998877642222233455554 55655554 688999999999999998864311 2
Q ss_pred EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
...+++||+.++++. +.|.++|..+.+.+.++.-.. ..++.+.|. +|. +++....++.|.+.|+.+++...
T Consensus 109 g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 109 GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLG 186 (266)
T ss_dssp CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEE
T ss_pred eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEE
Confidence 244667888777766 899999999998887775221 236788888 674 44544457899999999987541
Q ss_pred ceeeeeee-----------cCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCc
Q 008041 237 ASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNI 284 (579)
Q Consensus 237 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 284 (579)
...+. ........+.++ |+++.+++++ ..+++.+.++...
T Consensus 187 ---~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 187 ---WILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ---EEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ---EEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence 12221 112355777887 8887665555 5788888886543
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.60 E-value=2.5e-05 Score=81.96 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=120.1
Q ss_pred CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC
Q 008041 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (579)
Q Consensus 17 g~~lasg~~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (579)
+..+..++. ++.|.-+|. .+|+.+.++............... .... .... .+..+++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~~~v~v~~~ 123 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----VVDR--GLAY------------GAGQIVKKQA 123 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------ETTEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccc----cccc--ccEE------------ECCEEEEEeC
Confidence 345666666 889999999 999999887533211000000000 0000 0000 1567889999
Q ss_pred CCeEEEEEccCCeEEEEecCCC-C--CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC---
Q 008041 95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG--- 161 (579)
Q Consensus 95 ~g~i~iwd~~~~~~~~~~~~~h-~--~~V~~-l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~--- 161 (579)
++.+..+|..+|+.+++..... . ..+.+ ... .++ .++.++. ++.|+.+|..+|+.+.++......
T Consensus 124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 9999999999999988764221 0 01111 111 134 5666654 799999999999988876542210
Q ss_pred -----------------------------------eeEEEEccCCCEEEEECC------------------eEEEEECCC
Q 008041 162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD 188 (579)
Q Consensus 162 -----------------------------------v~~l~~~p~g~~l~~~~~------------------~i~vwd~~~ 188 (579)
...++++++...+..+.+ .|..+|.++
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 023567776666665541 599999999
Q ss_pred CeeeEEeec--CC--------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041 189 HKKMQKFSG--HP--------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 189 ~~~~~~~~~--h~--------~~v~~l~~s~~~~---~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
|+.+..++. |. .++. +...++|+ .++.++ .+|.++++|..+++..
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI 339 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence 998877753 21 2221 23335774 445554 7899999999988744
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=6.2e-06 Score=75.51 Aligned_cols=157 Identities=12% Similarity=0.061 Sum_probs=103.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEE
Q 008041 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK 194 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~ 194 (579)
.-..++.|+ ++..+.+.+.+|.|+.+|+.+++.+..+ -. .........++++.+.... +.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345789987 3556677778899999999999988887 32 3333333334455554444 8999999999999999
Q ss_pred eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCce---eEEeEEecCCcccCCCcEEEEEE
Q 008041 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 195 ~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
+.-... ...+++|++.|+.+. .++.|.++|..+.+... ......... .+.-+.+ .+|+..+..-
T Consensus 132 i~~~~e---GwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~---~I~V~~~g~~v~~lNeLe~------~dG~lyanvw 198 (268)
T 3nok_A 132 TRYSGE---GWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG---AVQVKLRGQPVELINELEC------ANGVIYANIW 198 (268)
T ss_dssp EECSSC---CCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE------ETTEEEEEET
T ss_pred EeCCCc---eeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE---EEEeCCCCcccccccccEE------eCCEEEEEEC
Confidence 874322 234446788887775 58899999999876542 111111111 2233344 2665444444
Q ss_pred cCCeEEEEEcCCceeeccc
Q 008041 272 ETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~ 290 (579)
.++.|.+.|.++++.+..+
T Consensus 199 ~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp TCSEEEEECTTTCBEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEE
Confidence 5789999999999876544
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.49 E-value=6.2e-06 Score=75.54 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=106.2
Q ss_pred CCCC--EEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC
Q 008041 116 HPGG--VSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD 188 (579)
Q Consensus 116 h~~~--V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~ 188 (579)
|... ..++.|+ ++..+.+++.+| .|+.+|+.+++.+..+.-.. .+....+.++++.+.... +.+.+||..+
T Consensus 39 hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 39 HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 5443 5899998 666666777766 89999999999998876543 333433444455555554 8999999999
Q ss_pred CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc---eeEEeEEecCCcccCCCc
Q 008041 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDDAGL 265 (579)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 265 (579)
.+.+.++.-.. ....+++|++.|+.+. .++.|.++|..+.+... ........ ..+.-+.+. +|+
T Consensus 117 ~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---~I~V~~~g~~~~~lNELe~~------~G~ 183 (262)
T 3nol_A 117 LRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---TITVTAHGEELPELNELEWV------DGE 183 (262)
T ss_dssp CCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---EEECEETTEECCCEEEEEEE------TTE
T ss_pred CcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---EEEeccCCccccccceeEEE------CCE
Confidence 99999987432 2244556787777765 57889999999876442 11121111 122223442 565
Q ss_pred EEEEEEcCCeEEEEEcCCceeeccc
Q 008041 266 YVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 266 ~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
..+..-.++.|.+.|.++++.+..+
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEE
Confidence 4444445889999999999876544
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.47 E-value=8.2e-05 Score=71.45 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=122.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
.++|+|+|+++++-..+++|..||..++ ....+.. .. ....+.+.+. +.++
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~------------------~p~gia~~~d---------G~l~ 86 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EG------------------KVSGLAFTSN---------GDLV 86 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SS------------------EEEEEEECTT---------SCEE
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CC------------------CceeEEEcCC---------CcEE
Confidence 3489999987666667889999987654 3322221 11 1122333221 4544
Q ss_pred EEEECC-C-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eeEee---------c
Q 008041 90 VLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR---------A 157 (579)
Q Consensus 90 ~~~~~~-g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~---------~ 157 (579)
++.... + .|..+|..+++...............++..+++..+++-..++.|+.+|...++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 433332 2 4777888887754222112223345666666554444444688999999765431 11110 1
Q ss_pred CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 158 ~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
.-...+.+ +|+++.++.+. +.|+.|++.. ++. ...+.. ......++++++|+++++.. ..+.|.+++..
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~- 241 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD- 241 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-
Confidence 11234555 88888776665 7999999875 322 122221 13456789999998766544 57889999875
Q ss_pred CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC
Q 008041 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (579)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 273 (579)
++.. .+...........+++|... .|++..|++++..
T Consensus 242 G~~~---~~~~~~~~~~~p~~~a~~g~--~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 RSTT---IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG 278 (306)
T ss_dssp CCEE---EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred CCEE---EEeecccccCCceEEEEecc--cCCCCEEEEECCC
Confidence 3321 11122222233455555310 0466666666543
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.47 E-value=0.00028 Score=68.00 Aligned_cols=231 Identities=7% Similarity=-0.036 Sum_probs=131.3
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCeE
Q 008041 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (579)
Q Consensus 19 ~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i 98 (579)
+|+.+.. ..|+..|+.++.....+... .....+.|.+.. +.++++-...+.|
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~-------------------~~p~g~~~d~~~--------~~ly~~D~~~~~I 54 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVAS--------NRIYWSDLSQRMI 54 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSC-------------------SSEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCC-------------------CceEEEEEEeCC--------CEEEEEECCCCcE
Confidence 4444443 46888898877654433211 112244554432 3344444456789
Q ss_pred EEEEccC---CeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008041 99 LALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (579)
Q Consensus 99 ~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l 174 (579)
..+++.+ +.....+.........++++.+.+..++ +-...+.|.++|+........+.........++++|.+..+
T Consensus 55 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134 (316)
T ss_dssp EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred EEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE
Confidence 9999876 1222222222224567899987555554 44567899999986443333333334577999999966555
Q ss_pred EEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCcee
Q 008041 175 ATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (579)
Q Consensus 175 ~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (579)
..+. +.|..++... .....+ ...-.....+++++++..|+.+-...+.|..+|+...... .+.........
T Consensus 135 y~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~ 210 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAH 210 (316)
T ss_dssp EEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSS
T ss_pred EEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCC
Confidence 4443 5788888753 333333 2234567899999988777776656789999998754322 22221111111
Q ss_pred EEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
...+++. .+..+++-...+.|..++..+++.+
T Consensus 211 P~giav~------~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 211 PFSLAVF------EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cEEEEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence 2233332 3455555556788999987776543
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=5.6e-05 Score=82.30 Aligned_cols=191 Identities=11% Similarity=0.029 Sum_probs=107.3
Q ss_pred EEEEc-cCCCEEEEEeC-CC----cEEEEECCCC-eEEEEeccCccccccccccccccccccccccceEEeeeccccccc
Q 008041 10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (579)
Q Consensus 10 ~~~fs-pdg~~lasg~~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (579)
..+|| |||++||.+.. +| +|+++|+.+| +.+.. .+........|.+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~~~~~~~~WspD------ 231 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVSGTNGEIVWGPD------ 231 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEEEECSCCEECSS------
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------cccCceeeEEEecC------
Confidence 45899 99999986653 23 4999999988 52110 00011234556553
Q ss_pred ccCCcEEEEEECC-----CeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-e
Q 008041 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-L 151 (579)
Q Consensus 83 ~~~~~~l~~~~~~-----g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~v~iwd~~~~~-~ 151 (579)
+..|+....+ ..|+++++.++.. ...+...+.....++.|+|||++|+..+. ...|+++|+.++. .
T Consensus 232 ---g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 ---HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp ---TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred ---CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 4445555543 2588898877642 11111123345678899999999776553 3468889987752 2
Q ss_pred e--eEe-ecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCC
Q 008041 152 L--GKF-RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 152 ~--~~~-~~~~~~v~~l~~~p~g~~l~~~~------~~i~vwd~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~~d 221 (579)
. ..+ ........++.|+.++.+++... ..|..+|+.++..... +..|...+.--.+++.+..|+.....+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~ 388 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA 388 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence 2 333 33344555666554444444433 3788888875322222 333444333233444566666655567
Q ss_pred Ce--EEEEEc
Q 008041 222 RY--IALWRT 229 (579)
Q Consensus 222 ~~--i~vwd~ 229 (579)
+. |.++++
T Consensus 389 g~~~l~~~dl 398 (751)
T 2xe4_A 389 GLTRIWTMMA 398 (751)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 75 455564
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.40 E-value=3.1e-05 Score=70.34 Aligned_cols=158 Identities=11% Similarity=0.022 Sum_probs=103.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee
Q 008041 118 GGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM 192 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~ 192 (579)
.-..++.|++ +..+.+.+.+| .|+.+|+.+++.+..+.-... +......++++.+.... +.+.+||.++.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4477999986 55556666654 899999999999988764433 33333334455555544 89999999999999
Q ss_pred EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCc---eeEEeEEecCCcccCCCcEEEE
Q 008041 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 193 ~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~ 269 (579)
.+++.... ...++++++.|+.+. .++.|.++|..+.+... ........ ..+.-+.+ .+|+..+.
T Consensus 99 ~ti~~~~~---Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~---~I~V~~~g~~~~~lNeLe~------~~G~lyan 165 (243)
T 3mbr_X 99 ARFRYPGE---GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVG---SIKVTAGGRPLDNLNELEW------VNGELLAN 165 (243)
T ss_dssp EEEECSSC---CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE------ETTEEEEE
T ss_pred EEEeCCCC---ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEE---EEEEccCCcccccceeeEE------eCCEEEEE
Confidence 99874322 234456777777665 58899999999876442 11111111 12222333 25665544
Q ss_pred EEcCCeEEEEEcCCceeeccc
Q 008041 270 ISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.-.+..|.+.|.++++.+..+
T Consensus 166 vw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEE
Confidence 446789999999999876543
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.38 E-value=8e-05 Score=78.20 Aligned_cols=195 Identities=12% Similarity=0.106 Sum_probs=117.2
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEECCCe
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (579)
..++.++.++.|.-+|..+|+.+.++............. .... .... .+..+++++.++.
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~------~~~~--g~a~------------~~~~v~~~t~dg~ 128 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCD------VVNR--GAAI------------YGDKVFFGTLDAS 128 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSC------SCCC--CCEE------------ETTEEEEEETTTE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccc------cCCC--ccEE------------ECCEEEEEeCCCE
Confidence 345555654458999999999998876432211000000 0000 0000 1567889999999
Q ss_pred EEEEEccCCeEEEEecCCC--------CCCEEEEEEc-cCCC-EEEEEe------CCCcEEEEeCCCCceeeEeecCCCC
Q 008041 98 VLALAVSAGQLKWRLSDCH--------PGGVSAISFA-THGS-CIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~~~h--------~~~V~~l~~~-~~~~-~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
|..+|..+|+.+++..... ..++. .=. .+|+ .+++++ .++.|+.+|..+|+.+.........
T Consensus 129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v--~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~ 206 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTI--VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGH 206 (582)
T ss_dssp EEEEESSSCCEEEEEECSCGGGTCBCCSCCEE--EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTC
T ss_pred EEEEECCCCCEEeeecCCCCCcCcccccCCEE--eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccc
Confidence 9999999999988764221 11221 100 1233 566654 3789999999999988765432100
Q ss_pred e-----------------------------------------eEEEEccCCCEEEEEC----------------------
Q 008041 162 I-----------------------------------------SCMAVSSDGKMLATAA---------------------- 178 (579)
Q Consensus 162 v-----------------------------------------~~l~~~p~g~~l~~~~---------------------- 178 (579)
+ ..++++|+..+++.+.
T Consensus 207 ~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d 286 (582)
T 1flg_A 207 MGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYD 286 (582)
T ss_dssp EEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCC
T ss_pred cccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccC
Confidence 0 2356667666666433
Q ss_pred ----CeEEEEECCCCeeeEEeec--CCC----CEEE-EEEe---cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008041 179 ----GQLKTFNCSDHKKMQKFSG--HPG----AVRF-MTFS---DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 179 ----~~i~vwd~~~~~~~~~~~~--h~~----~v~~-l~~s---~~~~---~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
+.|..+|.++|+.+..++. |.. .+.. +.+. .+|+ .++.++ .+|.++++|..+++..
T Consensus 287 ~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 287 SLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp CTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEe
Confidence 4799999999999887753 321 1111 2222 4674 555555 7999999999988744
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.33 E-value=0.00019 Score=69.46 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=115.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEec-C---------C--------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-D---------C--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~---------~--------h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~ 147 (579)
+.+++++..++.|..|+..+++...... . + ....+.++++.+++..|+.+...+.|..+|..
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence 5567888889999999988765431110 0 0 01357899999833356666555668899976
Q ss_pred CCceeeEeec-----CCCCeeEEEEcc-CCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCE
Q 008041 148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV 202 (579)
Q Consensus 148 ~~~~~~~~~~-----~~~~v~~l~~~p-~g~~l~~~~-------------------~~i~vwd~~~~~~~~~~~~h~~~v 202 (579)
++.. ..+.. ....+..+++.| +|++.++.. +.|..||..+++....... ....
T Consensus 110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p 187 (322)
T 2fp8_A 110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVP 187 (322)
T ss_dssp CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCC
T ss_pred CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccC
Confidence 5532 22221 113578899999 998877642 4688899877764322222 2334
Q ss_pred EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc----------
Q 008041 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------- 272 (579)
Q Consensus 203 ~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------- 272 (579)
..++|+|++++|+.+....+.|.+|++............. ... ...++++ ++|.+.++...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence 6799999998776664457899999987643211111111 122 4556666 88886666544
Q ss_pred CCeEEEEEc
Q 008041 273 TGVCYIWYG 281 (579)
Q Consensus 273 dg~i~iwd~ 281 (579)
.+.|..+|.
T Consensus 259 ~~~v~~~d~ 267 (322)
T 2fp8_A 259 DPKGIKFDE 267 (322)
T ss_dssp EEEEEEECT
T ss_pred ccEEEEECC
Confidence 356777765
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0011 Score=66.03 Aligned_cols=192 Identities=8% Similarity=-0.057 Sum_probs=114.2
Q ss_pred cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.++.+-...+.|+.+++.... ....+.........++++.+.+..|+ +-...+.|.+.++........+.......
T Consensus 125 ~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P 204 (400)
T 3p5b_L 125 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 204 (400)
T ss_dssp EEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCE
T ss_pred ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCc
Confidence 333444456778888887521 11122233445688999988555554 44567889999986554443444344568
Q ss_pred eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
..|+++|.+..|+.+. +.|...++............-.....|++++++..|+.+-...+.|..+|+......
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~--- 281 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--- 281 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---
Confidence 9999999665555544 578888886543333333334567899999988877776656788999998765422
Q ss_pred eeeeee-cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
.+.... ....... +.+. .+..+.+-...+.|..+|..+++.+.
T Consensus 282 ~~~~~~~~l~~P~g-l~v~------~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 282 TILEDEKRLAHPFS-LAVF------EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEEECSSTTSSEEE-EEEE------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEEeCCCCCCCCEE-EEEe------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 222211 1122222 2222 33444555567789999977775543
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.29 E-value=0.0015 Score=63.83 Aligned_cols=189 Identities=6% Similarity=-0.079 Sum_probs=112.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++++-...+.|+.+++..+...... ........++++.+.+..|+ +-...+.|.+.++........+...-.....
T Consensus 85 ~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ 163 (349)
T 3v64_C 85 ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred cEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence 334444446677999998876543222 22234467889987655554 4456778999997644333233333456799
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
++++|.+..|..+. +.|..+++.... ...+ ...-...+.|+++|++..|+.+-...+.|..+++...... .
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~---~ 239 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---A 239 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE---E
Confidence 99999666555554 568888876432 2333 2233457899999887777776656788999998764322 1
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
+.. ...... ..+.+. ++...++-...+.|..++..+++..
T Consensus 240 ~~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 240 VIS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEe-CCCCCc-eEEEEE------CCEEEEecCCCCeEEEEEccCCCcc
Confidence 111 111111 223332 3344444445778888886666543
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.28 E-value=0.00017 Score=75.57 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=97.1
Q ss_pred CcEEEEEECCC----------------eEEEEEccCCeEEEEecCCCC---------CCEEEEEEc-cCC---CEEEEEe
Q 008041 86 SSLLVLGTGGG----------------DVLALAVSAGQLKWRLSDCHP---------GGVSAISFA-THG---SCIYSAG 136 (579)
Q Consensus 86 ~~~l~~~~~~g----------------~i~iwd~~~~~~~~~~~~~h~---------~~V~~l~~~-~~~---~~l~s~~ 136 (579)
..++++++.++ .|..+|..+|+.++.+...|. .++. +... .+| ..++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 56777777653 799999999999988754432 2232 2222 467 4677788
Q ss_pred CCCcEEEEeCCCCceeeEeecCC------------C-Ce--------------------------eEEEEccCCCEEEEE
Q 008041 137 ADGMVCEIDPLTGSLLGKFRAST------------K-GI--------------------------SCMAVSSDGKMLATA 177 (579)
Q Consensus 137 ~d~~v~iwd~~~~~~~~~~~~~~------------~-~v--------------------------~~l~~~p~g~~l~~~ 177 (579)
.+|.++++|..+|+.+....... + ++ ..++++|+..++++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999999887654211 0 11 235666665554431
Q ss_pred ----------------------------------------C-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041 178 ----------------------------------------A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 178 ----------------------------------------~-~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 216 (579)
. |.|..||+.+++.+.+... ..+...-.....+..++.
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFY 489 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEE
Confidence 2 5788999999988777642 222221112334556777
Q ss_pred EecCCCeEEEEEcCCCccc
Q 008041 217 SAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~ 235 (579)
++ .|+.++.||.++++..
T Consensus 490 gt-~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 490 GT-LDGYLKARDSDTGDLL 507 (599)
T ss_dssp EC-TTSEEEEEETTTCCEE
T ss_pred EC-CCCeEEEEECCCCCEE
Confidence 66 7999999999999854
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.00057 Score=67.86 Aligned_cols=190 Identities=6% Similarity=-0.086 Sum_probs=114.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++++-...+.|+.+++..+.....+ ........++++.+.+..|+ +-...+.|.+.++........+...-.....
T Consensus 128 ~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~g 206 (386)
T 3v65_B 128 ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 206 (386)
T ss_dssp TEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcE
Confidence 344444456677999998876543333 22233457888987655554 4445678998887644333333333357799
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
++++|.+..|..+. +.|+.++.............-.....|+|+|++..|+.+-...+.|..+++...... .+
T Consensus 207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~ 283 (386)
T 3v65_B 207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AV 283 (386)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EE
T ss_pred EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EE
Confidence 99999776666554 578888876543322223334457899999877777776656788999998754322 11
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.. ...... ..+.+. .+..+++-...+.|..++..+++..
T Consensus 284 ~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 284 IS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EE-CCCCCc-eEEEEE------CCEEEEeeCCCCeEEEEECCCCcce
Confidence 11 111112 223332 3444555555778888886666543
No 265
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.24 E-value=0.0013 Score=72.31 Aligned_cols=246 Identities=8% Similarity=0.127 Sum_probs=146.2
Q ss_pred CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccc
Q 008041 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (579)
Q Consensus 4 ~~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (579)
..| .++..+++|.+- .|+.++-|..|+..++.... +..... . .+-....+.++....
T Consensus 310 ~~i--~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~~-~----------~~l~~~~V~~i~~d~-------- 366 (795)
T 4a2l_A 310 RSV--RSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKN-IRNIPY-K----------NSLSDNVVSCIVEDK-------- 366 (795)
T ss_dssp SCE--EEEEECTTSCEE-EEESSSCEEEECGGGGSSEE-ECCCTT-S----------SSCSCSSEEEEEECT--------
T ss_pred CcE--EEEEEeCCcCEE-EEECCCCeEEeCCCcccceE-EcCCCC-C----------CCCCCCeeEEEEECC--------
Confidence 346 344778888644 46666668888866554322 211000 0 000011222332221
Q ss_pred cCCcEEEEEECCCeEEEEEccCCeEEEEecC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
...+.+|+.++-|..||..++....-... -....|.++...++|+.+..|+.++-|..||..+++......
T Consensus 367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 34478899988899999988765432211 123579999998888757777777779999988776433221
Q ss_pred ----cCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008041 157 ----ASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (579)
Q Consensus 157 ----~~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l~s~~~~d~~i~v 226 (579)
.....|.++...++|++.+...+-+.+||..+++....... ....|.++...++|+..+. + . +-+..
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t-~-~Gl~~ 521 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-G-E-EGLSV 521 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-E-S-SCEEE
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-e-C-CceEE
Confidence 12357899999999987776667789999887754322111 2357899999999886654 3 3 45888
Q ss_pred EEcCCCccccceee-eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 227 WRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 227 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
|+..+.+. ..... .....+...+.++..+ ++|...+ ++.. -+..||.++.+
T Consensus 522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp EEEETTEE-EECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTTE
T ss_pred EeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCCc
Confidence 98876542 00000 0001122345556555 6777544 4444 57889877654
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.20 E-value=0.00011 Score=78.79 Aligned_cols=242 Identities=10% Similarity=0.028 Sum_probs=126.3
Q ss_pred ceEEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeee
Q 008041 8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (579)
Q Consensus 8 ~l~~~fsp-dg~~lasg~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 75 (579)
...+++.| +|+.++.|+.+. .+.+||..+++....-... ......+.......
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------------~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------------TKHDMFCPGISMDG 252 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------------CSCCCSSCEEEECT
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------------CCCCCccccccCCC
Confidence 34567888 888888887543 4778888776532110000 00000010111111
Q ss_pred cccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEe-CC-----CcEEEEeCC
Q 008041 76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAG-AD-----GMVCEIDPL 147 (579)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~-~d-----~~v~iwd~~ 147 (579)
++.++++|+. ++.+.+||+.+++....- ..+... -.++++.++|+.++.|+ .+ ..+.+||..
T Consensus 253 ---------~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 253 ---------NGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp ---------TSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ---------CCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 1667777774 457999999988654221 112221 13455667899988888 34 569999988
Q ss_pred CCceeeEe----ecCCCCeeEEEEccCCCEEEEE----------C-CeEEEEECCCCeeeEEeecCCC---------CEE
Q 008041 148 TGSLLGKF----RASTKGISCMAVSSDGKMLATA----------A-GQLKTFNCSDHKKMQKFSGHPG---------AVR 203 (579)
Q Consensus 148 ~~~~~~~~----~~~~~~v~~l~~~p~g~~l~~~----------~-~~i~vwd~~~~~~~~~~~~h~~---------~v~ 203 (579)
+++-...- ......-....+..+++.++.+ . ..+..||..+.........+.. .-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 76532210 0000000001112344444444 2 5688999987764433322211 223
Q ss_pred EEEEec-CCCEEEEEecCCC-----------eEEEEEcCCCccccceeee--eeecCceeEEeEEecCCcccCCCcEEEE
Q 008041 204 FMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (579)
Q Consensus 204 ~l~~s~-~~~~l~s~~~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (579)
++.|.. +++.++.+|. ++ .+.+||..+.... .+. .+...... .....- |+++.++.
T Consensus 403 av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~R~~-~~~~~l-----~~g~i~v~ 472 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFARTF-HTSVVL-----PDGSTFIT 472 (656)
T ss_dssp EEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSCCBS-CEEEEC-----TTSCEEEE
T ss_pred eEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCCccc-CCeEEC-----CCCCEEEE
Confidence 444543 6666666653 22 5777887765422 111 11122111 222232 78999999
Q ss_pred EEcC-----------CeEEEEEcCCc
Q 008041 270 ISET-----------GVCYIWYGQNI 284 (579)
Q Consensus 270 ~~~d-----------g~i~iwd~~~~ 284 (579)
|+.+ ..+.+||..+.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCcccCcCcCCCCcccceEEEcCCCC
Confidence 8764 46788887654
No 267
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.20 E-value=0.0012 Score=63.57 Aligned_cols=190 Identities=6% Similarity=-0.078 Sum_probs=112.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++.+-...+.|..+++..+.....+.........++++.+.+..| ++-...+.|.++++........+.........
T Consensus 47 ~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 126 (318)
T 3sov_A 47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 126 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccE
Confidence 34444555567799999877632111111222356788998755554 44456788999997643322223334457789
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008041 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~ 239 (579)
++++|.+..|..+. +.|..++..... ...+ ...-...+.|+++|++..|+.+-...+.|..+++...... .
T Consensus 127 iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~ 202 (318)
T 3sov_A 127 IALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ---A 202 (318)
T ss_dssp EEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E
T ss_pred EEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE---E
Confidence 99999655544443 578888876432 2233 2233456899999987777776656789999998754322 1
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
+.. ...... ..+++. .+..+.+-...+.|..++..+++..
T Consensus 203 ~~~-~~~~~P-~glav~------~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 203 VVK-GSLPHP-FALTLF------EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEC-SCCSCE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred Eec-CCCCCc-eEEEEe------CCEEEEEecCCCeEEEEECCCCCce
Confidence 111 111122 223332 2344444445788999998777653
No 268
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.19 E-value=0.0012 Score=60.77 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=126.2
Q ss_pred ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008041 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (579)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~ 146 (579)
..+-++|.+.. +.+.++...++.|...|.. ++.+.++.-+-....-++++.+++.++++.-.++.+.++++
T Consensus 28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 35566666542 5567778888889999998 77776653233356889999998877666557788999987
Q ss_pred CCCce---eeEee------cCCCCeeEEEEccCCCEEEEEC--C--eEEEEEC-CCCeeeEEee-------cCCCCEEEE
Q 008041 147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNC-SDHKKMQKFS-------GHPGAVRFM 205 (579)
Q Consensus 147 ~~~~~---~~~~~------~~~~~v~~l~~~p~g~~l~~~~--~--~i~vwd~-~~~~~~~~~~-------~h~~~v~~l 205 (579)
..... +.... .....+..++|+|+++.|+++. . .|+.|+- .....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 22221 1234678999999997777766 3 5555551 0111222221 123457899
Q ss_pred EEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecC-------ceeEEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008041 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------AVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (579)
Q Consensus 206 ~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (579)
+++|....++..+..++.+.++|.... .. ....+... -.....+++. ++|+ |...++-+.++.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~-lyIvsE~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGN-IYIVSEPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCC-EEEEETTTEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCC-EEEEcCCceEEE
Confidence 999987777777768889999997754 22 12222211 1234667777 8887 555588888888
Q ss_pred EEc
Q 008041 279 WYG 281 (579)
Q Consensus 279 wd~ 281 (579)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 754
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.14 E-value=0.0025 Score=69.88 Aligned_cols=239 Identities=12% Similarity=0.056 Sum_probs=142.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++..+++|++. .|+.++-|..||..++....-......... +-....+.++...+ ++.+
T Consensus 360 ~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~---------~g~~ 419 (795)
T 4a2l_A 360 SCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESAR----------GIGSNNIKAVYVDE---------KKSL 419 (795)
T ss_dssp EEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEET---------TTTE
T ss_pred EEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCccc----------CCCCccEEEEEEcC---------CCCE
Confidence 444778888754 466676789999887765432211000000 00011222222221 1444
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec------CC
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST 159 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~------~~ 159 (579)
|.+|+.++-|..||..+++...-... .....|.++...++|...+ |+.+ -+..||..+++....... ..
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCC
Confidence 78899888899999998876422210 1345799999988887544 4454 488999877654332211 23
Q ss_pred CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee-------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
..|.++...++|++.+...+-+..||..+++. .+. .....|.++...++|...+++ .. -+..||..+.
T Consensus 498 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT--RE-GFYCFNEKDK 572 (795)
T ss_dssp CCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE--SS-CEEEEETTTT
T ss_pred ceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe--CC-CceeECCCCC
Confidence 57899999999987776667788999887765 332 123568899999999866554 24 5888998765
Q ss_pred ccccceeeeee--ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 233 KKQSASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
+.. .+.. .-+...+..+..+ ++|...+++ ++-|..||.++.+
T Consensus 573 ~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 573 QIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE--TTEEEEEETTTTE
T ss_pred cEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc--CCceEEEcCCCCc
Confidence 422 1111 1122334455554 667655544 3567788877654
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.12 E-value=0.0017 Score=62.05 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=108.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C-cEEEEeCCCCceeeEeec-CCCCe
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRA-STKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~-~v~iwd~~~~~~~~~~~~-~~~~v 162 (579)
+.++++-..++.|..||...+... ... ....+.++++.++|+.+++.... + .|..+|..+++....... .....
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 555555557888999998764332 221 23468999999999865554332 2 477788777765433221 12234
Q ss_pred eEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEee---------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008041 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~--~~i~vwd~~~~~~-~~~~~---------~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~ 230 (579)
..++..+++..+++-. +.|+.+|..+++. +.... +.-...+.+ +|++++|+.+....+.|..|++.
T Consensus 120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 5566666666555553 8999999876531 21111 111234555 88888777776678899999987
Q ss_pred C-CccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
. ++.......... .....++++ ++|++.++....+.|.+||..
T Consensus 198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECCC
Confidence 5 322111111111 122345555 788776666667788888753
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0032 Score=60.49 Aligned_cols=181 Identities=12% Similarity=0.051 Sum_probs=111.7
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCC---CceeeE-eecCCCCeeEE
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLT---GSLLGK-FRASTKGISCM 165 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~---~~~~~~-~~~~~~~v~~l 165 (579)
+-+....|+..|+.+++....+ . ....+.+++|+++++.++.+ ..++.|+.+++.. +..... +...-..+..+
T Consensus 5 l~~~~~~I~~i~~~~~~~~~~~-~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 5 FFTNRHEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 82 (316)
T ss_dssp EEECBSSEEEEETTSCCCEEEE-C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred EEECCCeEEEEECCCcceEehh-c-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence 3344467999999887654333 2 34568999999876665555 4568999999875 122222 32223456889
Q ss_pred EEccCCCEEEEE-C--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeee
Q 008041 166 AVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 166 ~~~p~g~~l~~~-~--~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-~~i~vwd~~~~~~~~~~~~~ 241 (579)
++++.+..|..+ . +.|.+++.........+.........++++|.+..++.+.... +.|...++...... . .
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~---~-~ 158 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---S-L 158 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE---E-E
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE---E-E
Confidence 999755555444 3 7999999875433322333345678999999777666654333 67888887654321 1 1
Q ss_pred eeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 283 (579)
....-.....++++ +++..|..+. ..+.|..+|.+.
T Consensus 159 -~~~~~~~P~gla~d-----~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 -VTENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp -ECSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred -EECCCCCceEEEEe-----ccCCEEEEEECCCCeEEEEecCC
Confidence 11222334566676 7777776665 467899999763
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.00084 Score=67.63 Aligned_cols=148 Identities=13% Similarity=0.120 Sum_probs=85.8
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 10 ~~~fsp-dg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
.++++| ++..|..+...+.|+.+|..++....... ....+ ..++|.+. +..
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P------------------~~ia~d~~---------G~~ 192 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKV------------------RTICWTHE---------ADS 192 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCE------------------EEEEECTT---------SSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCc------------------ceEEEeCC---------CCE
Confidence 458998 45556666555889999998776554332 11111 22333322 554
Q ss_pred EEEEECC-C----eEEEEEccCCeE-EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-CCC
Q 008041 89 LVLGTGG-G----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK 160 (579)
Q Consensus 89 l~~~~~~-g----~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~ 160 (579)
++++... + .+..++...... ...+. ......+++++| +|..+++-..++.|+.++...+.....+.. ...
T Consensus 193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 5555542 2 244444332211 01111 123456788999 666555555778999999876654232222 223
Q ss_pred CeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008041 161 GISCMAVSSDGKMLATAA---GQLKTFNCS 187 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---~~i~vwd~~ 187 (579)
....++|+|+|++|..+. +.|+.++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 578999999999665554 789998765
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.002 Score=63.87 Aligned_cols=195 Identities=11% Similarity=-0.042 Sum_probs=112.0
Q ss_pred eEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 9 l~~~fspdg~~lasg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
..++|++.+..|.... ..+.|..++...+.....+......+. .++..+.. +.
T Consensus 119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~------------------glavd~~~--------g~ 172 (386)
T 3v65_B 119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG------------------GLAVDWVH--------DK 172 (386)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC------------------CEEEETTT--------TE
T ss_pred EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc------------------EEEEEeCC--------Ce
Confidence 3457887655555444 467788888776544332221111111 11221111 33
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCeeE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGISC 164 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-~~v~iwd~~~~~~~~~~-~~~~~~v~~ 164 (579)
++++-...+.|.+.++...... .+.........++++.|.+..++.+. .. +.|..+++. |.....+ ...-.....
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~PnG 250 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNG 250 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred EEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCeee
Confidence 4444445567888887654432 22233345679999999777666554 34 688888875 4333333 233346789
Q ss_pred EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 165 l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
|+++|++..|..+. +.|..+|+........+.........+++. .+ .++.+....+.|..++..+++
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCc
Confidence 99998777777665 789999987543332333334456778883 34 344444467888888865554
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.07 E-value=0.0025 Score=62.20 Aligned_cols=144 Identities=11% Similarity=-0.035 Sum_probs=89.2
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCe
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-~~v~iwd~~~~~~~~~~-~~~~~~v 162 (579)
+.+.++-...+.|.+.++...... .+.........++++.|.+..++.+. .. +.|..+++. |.....+ ...-...
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~P 205 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWP 205 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESCCSSCSCE
T ss_pred CeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCc
Confidence 344444445677888888755432 22233345679999999666655544 44 789889875 4333333 2233467
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
+.++++|++..|..+. +.|..+|+........+.........+++. .+ .++.+....+.|..++..+++
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence 8999999777777665 789999987543332233334456777773 34 444444467788888865554
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.06 E-value=0.0026 Score=58.53 Aligned_cols=189 Identities=7% Similarity=0.059 Sum_probs=112.4
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fspdg~~l-asg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
++|+|++..| ++...++.|...|.. ++....+.-. +. .....+++... +.++
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g~--~D~EGIa~~~~---------g~~~ 84 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------FV--KDLETIEYIGD---------NQFV 84 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------SC--SSEEEEEECST---------TEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------CC--CChHHeEEeCC---------CEEE
Confidence 4999987655 456678889999987 8877766311 10 11222333321 4434
Q ss_pred EEEECCCeEEEEEccCCeE---EEEec-----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEee--
Q 008041 90 VLGTGGGDVLALAVSAGQL---KWRLS-----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFR-- 156 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~---~~~~~-----~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~~~~~~~~~-- 156 (579)
++.-.++.+.++++..... ..... ...+...-+++|+|+++.|+++.......+|.+. ....+..+.
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 4444566788888765432 11111 1245567999999999888877765554555443 111222221
Q ss_pred -----cCCCCeeEEEEccCCCEEEE-EC--CeEEEEECCCCeeeEEeecC---------CCCEEEEEEecCCCEEEEEec
Q 008041 157 -----ASTKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGH---------PGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 157 -----~~~~~v~~l~~~p~g~~l~~-~~--~~i~vwd~~~~~~~~~~~~h---------~~~v~~l~~s~~~~~l~s~~~ 219 (579)
.+...+.+++++|....+.+ .. +.+..+|.+ ++.+..+.-. -.....|+|.++|+.+++ +
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E-
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c-
Confidence 12336789999996554444 44 789999965 5555444211 125688999999985554 5
Q ss_pred CCCeEEEEEc
Q 008041 220 GERYIALWRT 229 (579)
Q Consensus 220 ~d~~i~vwd~ 229 (579)
+-+.++.+..
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 5666666654
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.0087 Score=57.22 Aligned_cols=203 Identities=14% Similarity=0.201 Sum_probs=118.5
Q ss_pred ceEEeeec-ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC----CCE--E-EEEe-C--
Q 008041 69 TCMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GSC--I-YSAG-A-- 137 (579)
Q Consensus 69 ~~~~w~~~-~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~----~~~--l-~s~~-~-- 137 (579)
....|..+ ++. .++++.....+-+.+||+ .|+.+..+.. +.++.+..-|+ |+. + ++.. .
T Consensus 28 dpavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~ 97 (355)
T 3amr_A 28 DPAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEG 97 (355)
T ss_dssp EEEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred CccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence 44678743 333 455666667788999999 7877766522 56777776663 222 2 3333 3
Q ss_pred CCcEEEEeC--CCCceeeEeec------CC-CCeeEEEE--ccC-CC-EEEEEC--CeEEEEECC-------CCeeeEEe
Q 008041 138 DGMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNCS-------DHKKMQKF 195 (579)
Q Consensus 138 d~~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--~p~-g~-~l~~~~--~~i~vwd~~-------~~~~~~~~ 195 (579)
+++|.+|++ .++. +..+.. .. ..+..+++ +|. ++ ++++.. |.+..|++. +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999966 3333 444421 11 45677777 774 54 344444 888888772 34667777
Q ss_pred ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeee--cCceeEEeEEecCCcccCCCc-EEEEEEc
Q 008041 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGL-YVLAISE 272 (579)
Q Consensus 196 ~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 272 (579)
.- .+.+..+...+....|+.+- ++.-|..++.+.........+.... +-...+..+..-. .++++ +|+++++
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQ 251 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQ 251 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEG
T ss_pred cC-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcC
Confidence 64 45788899998888888875 6766666664432211111222221 1111233333310 04555 7777774
Q ss_pred -CCeEEEEEcC-Cceee
Q 008041 273 -TGVCYIWYGQ-NIEEL 287 (579)
Q Consensus 273 -dg~i~iwd~~-~~~~~ 287 (579)
+++..+||.+ +.+.+
T Consensus 252 G~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 252 GNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp GGTEEEEEESSTTCCEE
T ss_pred CCCEEEEEECCCCCcEE
Confidence 7799999986 44443
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.94 E-value=0.0033 Score=63.31 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=104.8
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCc
Q 008041 10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (579)
Q Consensus 10 ~~~fspd--g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (579)
.++|+|+ +..|..+...+.|+.+|..++....... ....+ ..+++.+. +.
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P------------------~giavd~d---------G~ 194 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQC------------------ADVNFTLN---------GD 194 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCE------------------EEEEECTT---------CC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCc------------------cEEEECCC---------CC
Confidence 4589985 3445555444899999998887765432 11111 22333221 44
Q ss_pred EEEEEECCC----e-EEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-ecC-C
Q 008041 88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAS-T 159 (579)
Q Consensus 88 ~l~~~~~~g----~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~-~ 159 (579)
|+++...+ . +...+...+........ ......+++++| +|..+++-..++.|+.+|..++.....+ ... .
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444322 1 33333322211001111 123456788999 6655555556788999998877663332 221 1
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeecC---------------CCCEEEEEE---------e
Q 008041 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S 208 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s 208 (579)
.....++|+|+|+.|..+. +.|+.++.. ++.. ...+.+. -.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 2334799999999666655 789998865 3321 1222221 123567888 5
Q ss_pred cCCCEEEEEecCCCeEEEEEc
Q 008041 209 DNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 209 ~~~~~l~s~~~~d~~i~vwd~ 229 (579)
++|..+++- ...+.|+.++.
T Consensus 353 ~~g~lyvaD-~~n~~I~~~~~ 372 (433)
T 4hw6_A 353 DEYDFYFCD-RDSHTVRVLTP 372 (433)
T ss_dssp CCEEEEEEE-TTTTEEEEECT
T ss_pred CCCcEEEEE-CCCCEEEEECC
Confidence 666555544 36778988885
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.92 E-value=0.0077 Score=65.18 Aligned_cols=190 Identities=9% Similarity=-0.054 Sum_probs=111.2
Q ss_pred cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCe
Q 008041 87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGI 162 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v 162 (579)
.++++-...+.|+.+++.... ....+.........+|++.+.++.|+.+ ...+.|.+.++........+.......
T Consensus 437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P 516 (791)
T 3m0c_C 437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 516 (791)
T ss_dssp EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCc
Confidence 334444455678888876531 1112223234567789998877665554 467899999986443333333344568
Q ss_pred eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008041 163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~ 238 (579)
..|+++|.+..|+.+. +.|...++........+...-.....|++++.+..|+.+-...+.|...++......
T Consensus 517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~--- 593 (791)
T 3m0c_C 517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--- 593 (791)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---
T ss_pred ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE---
Confidence 9999999755555544 578888886544333333334568899999877777776556778999998765432
Q ss_pred eeeeee-cCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCceee
Q 008041 239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEEL 287 (579)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~ 287 (579)
.+.... .....+.+..+ . .+|+.+. ..+.|...|..+++.+
T Consensus 594 ~v~~~~~~l~~P~glav~-------~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 594 TILEDEKRLAHPFSLAVF-------E-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEECTTTTSSEEEEEEE-------T-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEecCCCccCCCCEEEEe-------C-CEEEEEECCCCEEEEEeCCCCcce
Confidence 221110 11122222222 2 3444444 4678888887666543
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.91 E-value=0.002 Score=61.66 Aligned_cols=189 Identities=13% Similarity=0.226 Sum_probs=116.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEEEEC--
Q 008041 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (579)
Q Consensus 17 g~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-- 94 (579)
..+++....++-+.|||+ +|+.++.+.. ..++.+-..+.+ ....+ .-.++++...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~---------------~l~g~-----~~dla~as~R~~ 96 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDF---------------PLNGK-----KVDIAAASNRSE 96 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEE---------------EETTE-----EEEEEEEEECST
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccc---------------ccCCc-----eEeEEEEeCCCC
Confidence 345555566778999999 7888887753 122222111110 00000 0112333333
Q ss_pred -CCeEEEEEc--cCCeEEEEecC---C--CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceeeE
Q 008041 95 -GGDVLALAV--SAGQLKWRLSD---C--HP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLGK 154 (579)
Q Consensus 95 -~g~i~iwd~--~~~~~~~~~~~---~--h~-~~V~~l~~--~~~-~~-~l~s~~~d~~v~iwd~~-------~~~~~~~ 154 (579)
++.|.+|++ .++. +..+.. . .. ..+..+++ +|. +. +++....+|.+..|++. +++.+++
T Consensus 97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 466999976 4444 323311 0 11 55777888 664 44 57778889999999883 3466777
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-----CCeeeEEee-cC-CCCEEEEEEe--cCCC-EEEEEecCCC
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGER 222 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~-----~~~~~~~~~-~h-~~~v~~l~~s--~~~~-~l~s~~~~d~ 222 (579)
|.- .+.+..+.+.+....|..+. .-|..|+.+ +++.+..+. ++ ...+..|++. ++++ ||++++..++
T Consensus 176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 774 45788999998888888887 347777755 345565542 22 2468888884 5555 7888776788
Q ss_pred eEEEEEcC
Q 008041 223 YIALWRTD 230 (579)
Q Consensus 223 ~i~vwd~~ 230 (579)
+..+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999986
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.0045 Score=62.27 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=92.1
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C----cEEEEeCCCCcee--eEeecCC
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST 159 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~----~v~iwd~~~~~~~--~~~~~~~ 159 (579)
..|+++...+.|+.+|+.++...... . .......++|+++|++++.+... + .+..++. .+... ..+.. .
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~-~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~ 225 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVY-S-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-G 225 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEE-C-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-C
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEe-c-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-C
Confidence 34666666678999999887764332 2 44568999999999976666542 2 3444443 33222 22322 2
Q ss_pred CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 160 ~~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
.....++++| +|.++++-. +.|+.|+..++....... +.......++|+|+|++|+.+....+.|..++...
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 3567889999 666665543 799999998775422222 12234678999999997666655678999988764
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.90 E-value=0.00062 Score=74.05 Aligned_cols=183 Identities=10% Similarity=0.089 Sum_probs=103.7
Q ss_pred CcEEEEEEC-CC----eEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce--e
Q 008041 86 SSLLVLGTG-GG----DVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL--L 152 (579)
Q Consensus 86 ~~~l~~~~~-~g----~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~--~ 152 (579)
+..|+.+.. +| .|+++|+.++ +.+..... ....++.|+|||+.|+....| ..|+.+++.++.. .
T Consensus 186 G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~ 262 (751)
T 2xe4_A 186 HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV 262 (751)
T ss_dssp TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE
T ss_pred CCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE
Confidence 555665443 33 3999999998 63211111 113467899999988777665 3688889877642 2
Q ss_pred eEeec-CCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCe-ee--EEe-ecCCCCEEEEEEecCCCEEEEEecCC-
Q 008041 153 GKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK-KM--QKF-SGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (579)
Q Consensus 153 ~~~~~-~~~~v~~l~~~p~g~~l~~~~-----~~i~vwd~~~~~-~~--~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d- 221 (579)
..+.. .......+.|+|||++|+... ..|+++|+.++. .. ..+ .+......++.|+. |+.|+..+..+
T Consensus 263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~ 341 (751)
T 2xe4_A 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG 341 (751)
T ss_dssp EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence 33332 223567889999999888654 478999998752 12 333 33445555666554 55554444333
Q ss_pred ---CeEEEEEcCCCcccccee-eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCe--EEEEEc
Q 008041 222 ---RYIALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWYG 281 (579)
Q Consensus 222 ---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~ 281 (579)
..|..+++.+.... .. +.. ......+..+.+. ++..+++...+|. |+++++
T Consensus 342 a~~~~L~~~d~~~~~~~--~~~li~-~~~~~~l~~~~~~------~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 342 AVNHKLLIAPRGQPSDW--SHVLVD-HSEDVFMESIAVR------SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CTTCEEEEEETTSTTCC--CCEEEC-CCSSEEEEEEEEC------SSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEcCCCcccc--eeeEEC-CCCCcEEEEEEEE------CCEEEEEEEeCCEEEEEEEec
Confidence 35677776542111 11 111 1222233333332 3455666677885 555564
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.84 E-value=0.01 Score=56.90 Aligned_cols=145 Identities=10% Similarity=-0.038 Sum_probs=90.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEe-ecCCCCe
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI 162 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~-~~~~~~v 162 (579)
+.++++-...+.|.++++...... .+.........++++.|.+..++.+. ..+.|...++. |.....+ ...-...
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~P 168 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWP 168 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCc
Confidence 344444445677888888754332 22223445679999999766666665 35788888875 4433333 2233467
Q ss_pred eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 163 ~~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
+.++++|++..|..+. +.|..+|+..........+.......+++..+ .++.+....+.|..++..+++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence 8999999777777765 79999998743322222323445567777533 3443344678899998876653
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.81 E-value=0.017 Score=57.38 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=115.4
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC----ceeeEeecCCCCee
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG----SLLGKFRASTKGIS 163 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~----~~~~~~~~~~~~v~ 163 (579)
+++-+....|+..++......... .....+.+++|++.+..|+.+. ..+.|+.+++... .....+........
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEeccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344445578999998876654333 2446789999998766665554 5688999998642 22233333345778
Q ss_pred EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-CCeEEEEEcCCCcccccee
Q 008041 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVKKQSASC 239 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-d~~i~vwd~~~~~~~~~~~ 239 (579)
.+++++.+..|+.+. +.|.+.+++.......+.........|++.|.+.+|+.+... .+.|...++...... .
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~---~ 239 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---S 239 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE---E
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE---E
Confidence 999998555555444 799999987654443344344557899999976666665322 367888888764322 1
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcCC
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 283 (579)
+ ....-.....++++ +++..|..+.. .+.|..+|++.
T Consensus 240 ~--~~~~l~~P~glavd-----~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 240 L--VTENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp E--ECSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred E--EECCCCceEEEEEE-----eCCCEEEEEECCCCEEEEEeCCC
Confidence 1 11222334566676 77777777654 67899998754
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.0053 Score=67.14 Aligned_cols=185 Identities=10% Similarity=0.114 Sum_probs=117.6
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCC
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKG 161 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~ 161 (579)
..+.+|+.++-|..||..++....-.. ......|.++...++|. +..|+.++-+..+|..+++.. .+.. ....
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~ 451 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLD 451 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCC
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCe
Confidence 447888877889999987665431100 12346799999887776 555777677999998766543 3321 3457
Q ss_pred eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC-----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008041 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~ 236 (579)
|.++...++|.+.+...+-+..||..+++........ ...|.++...++|...+.+ .++-+..|+..+.+..
T Consensus 452 v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~~- 528 (781)
T 3v9f_A 452 VRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT--FGGGVGIYTPDMQLVR- 528 (781)
T ss_dssp EEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE--SSSCEEEECTTCCEEE-
T ss_pred EEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE--cCCCEEEEeCCCCeEE-
Confidence 9999999988876666677999998876543322222 3578999999999866554 3344788887765422
Q ss_pred ceeeeee--ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 237 ASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 237 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
. +.. ..+...+.++... ++|...+ ++.+|.+..||.++++
T Consensus 529 --~-~~~~~~l~~~~i~~i~~d-----~~g~lWi-~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 529 --K-FNQYEGFCSNTINQIYRS-----SKGQMWL-ATGEGLVCFPSARNFD 570 (781)
T ss_dssp --E-ECTTTTCSCSCEEEEEEC-----TTSCEEE-EETTEEEEESCTTTCC
T ss_pred --E-ccCCCCCCCCeeEEEEEC-----CCCCEEE-EECCCceEEECCCCCc
Confidence 1 110 1123344555554 6666544 4556665888877654
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.80 E-value=0.0036 Score=63.05 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=88.5
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCce-eeEeecCCC
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK 160 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~-~~~~~~~~~ 160 (579)
..|+++...+.|+.+|+.++...... .......+++|+++|+ |+.+...+ .+...+...+.. ...+. ...
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~ 228 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR 228 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence 44666655588999999888775332 2445689999999999 55554321 233333322211 01222 234
Q ss_pred CeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 161 ~v~~l~~~p-~g~~l~~~~--~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
....++++| +|.++++-. +.|+.+|..++.....+. +....-..++|+|++++|+.+....+.|..+++..
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 557789999 666555543 789999998776533332 11222346999999997666655678999988764
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.79 E-value=0.00053 Score=73.42 Aligned_cols=227 Identities=5% Similarity=-0.083 Sum_probs=121.7
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 11 ~~fspdg~~lasg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+++.++|++++.|+. ++.+.+||..+++-...-. .. ...........+ ++.++
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-----~~------------~~R~~~s~~~~~---------dg~iy 301 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-----MQ------------VARGYQSSATMS---------DGRVF 301 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-----CS------------SCCSSCEEEECT---------TSCEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-----CC------------ccccccceEEec---------CCeEE
Confidence 477889999999985 5689999988775432110 00 000011111111 16677
Q ss_pred EEEE-CC-----CeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCc
Q 008041 90 VLGT-GG-----GDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPLTGS 150 (579)
Q Consensus 90 ~~~~-~~-----g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d---------~~v~iwd~~~~~ 150 (579)
++|+ .+ .++.+||+.+++....- ....... ....+..++..++.++.+ ..+..||..+..
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence 7777 33 45999999988754220 0000000 001122345555555444 356788887665
Q ss_pred eeeEeecCC---------CCeeEEEEcc-CCCEEEEEC--C-----------eEEEEECCCCeeeEEe--ecCCCC-EEE
Q 008041 151 LLGKFRAST---------KGISCMAVSS-DGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGA-VRF 204 (579)
Q Consensus 151 ~~~~~~~~~---------~~v~~l~~~p-~g~~l~~~~--~-----------~i~vwd~~~~~~~~~~--~~h~~~-v~~ 204 (579)
......... ..-.++.+.. ++++++.|+ + .|.+||..+.+..... ..+... -.+
T Consensus 381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 460 (656)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence 333222111 1223444433 777888776 1 6888888776544332 112222 234
Q ss_pred EEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041 205 MTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 205 l~~s~~~~~l~s~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (579)
....|+++.++.+|..+ ..+.+||..+.+-. .+.....+.....+.... |+|+.++.|+.
T Consensus 461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG~ 530 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGGG 530 (656)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEECC
T ss_pred eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCCC
Confidence 56678999988887421 46899998776422 111222222222333343 78998888875
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.007 Score=57.35 Aligned_cols=152 Identities=9% Similarity=0.045 Sum_probs=101.9
Q ss_pred ceEEeeecccccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCC----CC--CCEEEEEE---ccCCCEEEEEe--
Q 008041 69 TCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG-- 136 (579)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~----h~--~~V~~l~~---~~~~~~l~s~~-- 136 (579)
.+..|... ...+++++ ..|.|..||+..+........+ .. ..+.++.| .|+++++++..
T Consensus 16 E~~~wd~~---------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 16 EDTIYDRT---------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp SCEEEETT---------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCccCcCC---------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 35667654 34456666 7899999999866543333222 11 14689999 68877766543
Q ss_pred -----------CCCcEEEEeCC---CCceeeEee--c-----------CCCCeeEEEEccCCCEEEEEC---CeEEEEEC
Q 008041 137 -----------ADGMVCEIDPL---TGSLLGKFR--A-----------STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (579)
Q Consensus 137 -----------~d~~v~iwd~~---~~~~~~~~~--~-----------~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~ 186 (579)
.+..|..||+. +++.+.... . ....+..++..++|+..++++ +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999998 787765543 1 112578999999999999876 45666665
Q ss_pred CCCeeeEEee-c-----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 187 SDHKKMQKFS-G-----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 187 ~~~~~~~~~~-~-----h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
... .+..+. . .....+.|+++|+|..|++... .+.+..+|+..
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 433 333221 1 1123679999999999988874 89999999884
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=0.00014 Score=78.09 Aligned_cols=192 Identities=8% Similarity=-0.051 Sum_probs=106.7
Q ss_pred EEEEE-ECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008041 88 LLVLG-TGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (579)
Q Consensus 88 ~l~~~-~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 161 (579)
.|+.+ ...+.|+.+++.+ .... .+.........++++.+.+..| ++-...+.|.++++........+......
T Consensus 419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~ 497 (699)
T 1n7d_A 419 RIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK 497 (699)
T ss_dssp EEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC
T ss_pred eEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC
Confidence 34444 3456788888875 2211 1211122345678887655444 44456788999998644433333333346
Q ss_pred eeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008041 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (579)
Q Consensus 162 v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~ 237 (579)
...|+++|.+..|+.+. +.|+.+++........+...-...+.|+|+|++..|+.+-...+.|.++++......
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-- 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-- 575 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--
Confidence 68899999766555544 577777765332221222223445789999987666665556788999998754322
Q ss_pred eeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
.+..... ...... +.+. .+ ..+++....+.|..++..+++.+..+
T Consensus 576 -~~~~~~~~~~~P~g-lavd-----~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 576 -TILEDEKRLAHPFS-LAVF-----ED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp -EECCCSSSCSSCCC-CEEE-----TT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred -EEEecCCcCCCceE-eEEE-----CC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 1111110 111112 2222 22 34444455789999998888766544
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.011 Score=59.76 Aligned_cols=152 Identities=11% Similarity=0.152 Sum_probs=85.1
Q ss_pred EEEEcc-CCC-EEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEe-------eeccccc
Q 008041 10 LTSFSP-ALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK 80 (579)
Q Consensus 10 ~~~fsp-dg~-~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-------~~~~~~~ 80 (579)
.++|+| ++. ++++-...+.|++.|..++............ ......+.| .+.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~---------------~~~p~~ia~~~~~~~~d~~---- 203 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP---------------TNRIRSIAFNKKIEGYADE---- 203 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS---------------CSBEEEEEECCCBTTTBCT----
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc---------------cCCCcEEEEeecccccCCC----
Confidence 459998 344 4444444567999999888776544321100 001223333 221
Q ss_pred ccccCCcEEEEEECCC-------eEEEEEccC-CeEE-----EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeC
Q 008041 81 KRKLGSSLLVLGTGGG-------DVLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDP 146 (579)
Q Consensus 81 ~~~~~~~~l~~~~~~g-------~i~iwd~~~-~~~~-----~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~v~iwd~ 146 (579)
+..++++...+ .|.+++... +... ..+. . -....+++++|++.. +++-..++.|+.+|+
T Consensus 204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 55566665554 266666443 2221 1111 1 123457788995555 445557788999998
Q ss_pred C-------CCce-----------eeE-eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008041 147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS 187 (579)
Q Consensus 147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~ 187 (579)
. ++.. ... +.. .......|+|+|+|+.|..+. +.|+.++..
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 7 4543 112 222 233568999999999666654 788886543
No 290
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.012 Score=64.20 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=115.2
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~ 160 (579)
..|.+|+.++-+..+|..+++...... ......|.++...++|. +..|+. +-+..||..+++........ ..
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLEN 495 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccc
Confidence 346778887889999998887642211 11346799999888775 555555 55899998776543322222 35
Q ss_pred CeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008041 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~ 235 (579)
.|.++...++|.+.+... +-+..||..+++. ..+.. ....|.++...++|...++ + .+|.+..||..+.+..
T Consensus 496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T-~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-T-GEGLVCFPSARNFDYQ 572 (781)
T ss_dssp CEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-E-TTEEEEESCTTTCCCE
T ss_pred eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-E-CCCceEEECCCCCcEE
Confidence 789999999998877775 6688899877653 33321 1356889998888886654 3 3565488888766422
Q ss_pred cceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCce
Q 008041 236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (579)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (579)
.+... -+...+..+... ++|...+ ++.+| |..|+.++.+
T Consensus 573 ----~~~~~~gl~~~~i~~i~~d-----~~g~lW~-~t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 573 ----VFQRKEGLPNTHIRAISED-----KNGNIWA-STNTG-ISCYITSKKC 613 (781)
T ss_dssp ----EECGGGTCSCCCCCEEEEC-----SSSCEEE-ECSSC-EEEEETTTTE
T ss_pred ----EccccCCCCCceEEEEEEC-----CCCCEEE-EcCCc-eEEEECCCCc
Confidence 11111 122233444444 5666544 44555 7777776543
No 291
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.66 E-value=0.036 Score=52.00 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=120.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecCC----C
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~----~ 160 (579)
...+++-. ...+.++|+.+.+.+.... ...+|.--.|-.+... +-.+ +..|+-|++.. ..+++.|.-|. .
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~~L-~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~ 152 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTV-ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 152 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSSEE-EEEE-SSEEEEEESSTTCCCEEEEECCGGGTTC
T ss_pred ccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCCCeE-EEEc-CCcEEEEcccCCCCCceeeecchhcccc
Confidence 45566655 6779999999998776653 3467887788655443 3332 56799999874 35666676554 3
Q ss_pred CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEec--CCCEEEEEec---CCCeEEE
Q 008041 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--NGKYVLSSAV---GERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~---~d~~i~v 226 (579)
.|..-..+++.++++..+ |.+.+|..+.+. -..+.||...-..+.+.. ....|++-+. ..+.+++
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhI 231 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 231 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 788888899999887654 789999987653 445677765443333221 1112222221 1257889
Q ss_pred EEcCCC---ccc-cceee---eeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 227 WRTDGV---KKQ-SASCV---LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 227 wd~~~~---~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
-++... ... ..+.+ +.-+......-.+..+ +.-..+...+.-|.+++||++|+..+...
T Consensus 232 iEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs-----~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 232 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCCCCCCCcccccceeeCCccccCCceEEEEec-----ccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 888543 111 00111 1111223333444444 56677888899999999999999887543
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.66 E-value=0.015 Score=62.91 Aligned_cols=143 Identities=8% Similarity=-0.078 Sum_probs=89.4
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeE-eecCCCCee
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGK-FRASTKGIS 163 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~v~ 163 (579)
.++++-...+.|.+.++...... .+.........+|++.|.+.+|+.+.. .+.|...++. |..... +...-....
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN 561 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCce
Confidence 44445555677999988765433 232334456899999998666666542 3689999985 444443 333335789
Q ss_pred EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.|++++.+..|+.+. +.|..+++........+... -.....|++. +.+|+.+-...+.|...+..+++
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 999998777777765 68999998654433333322 2234456653 33555554456777777766654
No 293
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.63 E-value=0.0079 Score=57.13 Aligned_cols=183 Identities=10% Similarity=0.085 Sum_probs=92.8
Q ss_pred CcEEEEEECC-----CeEEEEEccCCe---EEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce
Q 008041 86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~ 151 (579)
+.+++.|+.+ ..+.+||+.+++ ...... .........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 5566666654 359999998876 321110 111111222222 56666666643 3588999877643
Q ss_pred ee--EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC
Q 008041 152 LG--KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 ~~--~~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
.. .+........++. -++++++.|+ ..+.+||..+.+-... ++...... ++.. -+++.++.+|..
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~ 216 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGGFD 216 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBC
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeCCC
Confidence 22 2221111222222 2677777775 4689999988754322 11111111 2222 256666666532
Q ss_pred ----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041 221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 284 (579)
-..+.+||+.+.+-. .+..+........++. -+++.++.|+.+ ..+.+||.++.
T Consensus 217 ~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 246889999876532 2212222211112222 255666666654 35677777654
No 294
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.59 E-value=0.015 Score=56.28 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=82.1
Q ss_pred EEEEEEC---CCeEEEEEccCC--eE--EEEecCCCCCCEEEEEEccCCCEEEEEe-----------------CCCcEEE
Q 008041 88 LLVLGTG---GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCE 143 (579)
Q Consensus 88 ~l~~~~~---~g~i~iwd~~~~--~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-----------------~d~~v~i 143 (579)
.|+++.. +..|.+|++..+ .. +..+....-...+++.+.++|.+.++.. ..|.|+.
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 3444443 345777776643 22 2233222234689999999998666543 1245666
Q ss_pred EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEec-CCCEEEE
Q 008041 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLS 216 (579)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~s~-~~~~l~s 216 (579)
+|. ++. ..+...-...+.++|+||++.+..+. +.|+.|++.. ++. ...+ ...+..-.+++.+ +|++.++
T Consensus 208 ~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 208 YSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp ECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEE
T ss_pred EEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEE
Confidence 664 332 22222234678999999999888876 7999999863 322 2233 2345567888888 5887665
Q ss_pred EecCC-CeEEEEEcC
Q 008041 217 SAVGE-RYIALWRTD 230 (579)
Q Consensus 217 ~~~~d-~~i~vwd~~ 230 (579)
+. .+ +.|..|+..
T Consensus 284 ~~-~~g~~v~~~~P~ 297 (355)
T 3sre_A 284 CH-PNGMRIFFYDAE 297 (355)
T ss_dssp EE-SCHHHHHSCCTT
T ss_pred ec-CCceEEEEECCC
Confidence 54 33 344444443
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.51 E-value=0.059 Score=52.67 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=121.4
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecCC----C
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~----~ 160 (579)
...|++-. ...+.++|+.+...+.... ...+|.--.|-.+. .++-. .+..|+-|++.. ..+++.|.-|. .
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccc
Confidence 34455554 6779999999988776553 23456666775544 34433 366799999864 35666676554 3
Q ss_pred CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEEEecC---CCeEEE
Q 008041 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG---ERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~~---d~~i~v 226 (579)
.|..-..+++.++++..+ |.+.+|..+.+ .-..+.||...-..+.+..+ ...+++-+.. .+.+++
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 788888899999888654 68999998765 34566788655444433211 1123332212 268999
Q ss_pred EEcCCCc-c-cc--cee---eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeeccc
Q 008041 227 WRTDGVK-K-QS--ASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (579)
Q Consensus 227 wd~~~~~-~-~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (579)
-++.... . .. ... .+.-+......-.+..+ +.-..+...+.-|.+++||++|+..+...
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeeeee
Confidence 9985531 0 00 000 11111223344444554 66678888999999999999999887543
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.47 E-value=0.074 Score=56.08 Aligned_cols=183 Identities=13% Similarity=0.029 Sum_probs=109.8
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (579)
+|+. +..+.|+..++.+......+.-..-..+.+++|++.+..++.+ ..++.|+.+++........+......+..++
T Consensus 8 ~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 3444 4678899999987654333322234568999999976666554 4678999999865443333333334678899
Q ss_pred EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCccccceeeee
Q 008041 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 167 ~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
+++.+..|..+. +.|.+.++........+...-.....|++.|...+|+.+-. ..+.|...++...... .+.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l~- 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TLV- 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE-
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EEE-
Confidence 998766555554 78999998754332222233455789999986556665531 2467877777665422 111
Q ss_pred eecCceeEEeEEecCCcccCCCcEEEEEEc-CCeEEEEEcC
Q 008041 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 282 (579)
..-.....+.++ +++..|..+.. .+.|..+|+.
T Consensus 163 --~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 163 --PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp --CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETT
T ss_pred --CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCC
Confidence 122223445554 55555554433 4566666654
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.42 E-value=0.0086 Score=56.72 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=101.8
Q ss_pred EEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeE-eec----CC--CCeeEEEE---ccCCCEEEEEC----------
Q 008041 120 VSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK-FRA----ST--KGISCMAV---SSDGKMLATAA---------- 178 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~-~~~----~~--~~v~~l~~---~p~g~~l~~~~---------- 178 (579)
.-++.|++....|+.++ ..++|..||...+..... +.. .. ..+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678988667777776 789999999875644333 221 11 14689999 68988887532
Q ss_pred -----CeEEEEECC---CCeeeEEee--c-----------CCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCcccc
Q 008041 179 -----GQLKTFNCS---DHKKMQKFS--G-----------HPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQS 236 (579)
Q Consensus 179 -----~~i~vwd~~---~~~~~~~~~--~-----------h~~~v~~l~~s~~~~~l~s~~~~d-~~i~vwd~~~~~~~~ 236 (579)
+.+..||+. +++.+.... . -......++..++|+..++.+. - +.|...+.......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~pdG~~~~- 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSADGKTVS- 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECTTSCCEE-
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeCCCCEEe-
Confidence 468999999 787765442 1 1134789999999998887763 5 66666665543211
Q ss_pred ceeeeeeec----CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 237 ASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 237 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
.+.... ...-...+.+. |+|..|++....|.+..||+.
T Consensus 173 ---~~~~~~~~~~~~~G~nGIv~~-----pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 173 ---TFAWESGNGGQRPGYSGITFD-----PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ---EEEECCCCSSSCCSCSEEEEE-----TTTTEEEEESSSSSEEEEECS
T ss_pred ---eeeecCCCcccccCcceEEEe-----CCCCEEEEEcCCCeEEEEcCC
Confidence 111111 11123455665 999998888779999999987
No 298
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.42 E-value=0.037 Score=52.40 Aligned_cols=183 Identities=11% Similarity=0.077 Sum_probs=93.1
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeeE
Q 008041 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~ 154 (579)
+.+++.|+.++ .+.+||+.+++-..... .........+.+ ++..++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55666666443 48999998877532211 111111222222 566777777553 578889876643222
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC-
Q 008041 155 --FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG- 220 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~- 220 (579)
+....... +++. -++++++.|+ ..+.+||..+.+-... ++...... ++.. -+++.++.+|..
T Consensus 140 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 140 APMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDG 215 (302)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSS
T ss_pred CCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCC
Confidence 22111122 2222 2677777775 2488999988754322 22111111 2222 256666666532
Q ss_pred ---CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (579)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 284 (579)
...+.+||+.+.+-. .+..+........++. -+++.++.|+.++ .+.+||..+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVCA-------VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEe---eCCCCCCccccCeEEE-------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 136889998876532 1112221111111222 2556667776543 4788887654
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.42 E-value=0.044 Score=57.72 Aligned_cols=186 Identities=9% Similarity=0.013 Sum_probs=107.1
Q ss_pred EEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008041 88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (579)
Q Consensus 88 ~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (579)
.|+.+. ..+.|..+++........+.........++++.+.++.++.+ ...+.|.+.++.. .....+. ..-.....
T Consensus 53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~ 131 (619)
T 3s94_A 53 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRA 131 (619)
T ss_dssp EEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCC
T ss_pred EEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCce
Confidence 344444 456688888876532122222233568999999866655554 4678999999864 3333332 34456789
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
|+++|.+..|..++ +.|...++............-.....|++++++..|+.+-...+.|...++....... ..
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~ 209 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VV 209 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--EE
Confidence 99999755555444 4677777654332222223345678999999877777765567789999887654321 11
Q ss_pred e-eeecCceeEEeEEecCCcccCCCcEEEEE-EcCCeEEEEEcCCceee
Q 008041 241 L-AMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEEL 287 (579)
Q Consensus 241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 287 (579)
. .+.++ . .+.+. .+ .|+.+ ...+.|...|..+++..
T Consensus 210 ~~~~~~P---~-gi~~~-----~~--~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 210 KGSLPHP---F-ALTLF-----ED--ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp ------C---C-CEEES-----SS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred eCCCCCc---e-EEEEe-----CC--EEEEecCCCCEEEEEECCCCccc
Confidence 1 12222 1 22232 23 45544 45778999998777543
No 300
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.42 E-value=0.032 Score=53.97 Aligned_cols=136 Identities=11% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCCeEEEEEccCC--eEEE-EecC----CCCCCEEEEEEcc--CCC-EEEEEe-C--CCcEEEEeCCCC-c---eeeEee
Q 008041 94 GGGDVLALAVSAG--QLKW-RLSD----CHPGGVSAISFAT--HGS-CIYSAG-A--DGMVCEIDPLTG-S---LLGKFR 156 (579)
Q Consensus 94 ~~g~i~iwd~~~~--~~~~-~~~~----~h~~~V~~l~~~~--~~~-~l~s~~-~--d~~v~iwd~~~~-~---~~~~~~ 156 (579)
.+|.|.++|+.+. +... .+.. .......++.+.+ +|. +|+.+. . +.+|.+|++..+ . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999999742 3211 1211 1234678888876 454 455553 2 467778776543 2 223343
Q ss_pred cCC-CCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008041 157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 157 ~~~-~~v~~l~~~p~g~~l~~~~-------------------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 216 (579)
+.. ...+.+.+.++|.+.++.. |.|+-+|. ++ +..+...-...+.++|+||++.++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 322 3688999999999877753 34555554 33 2223223345689999999998888
Q ss_pred EecCCCeEEEEEcCCC
Q 008041 217 SAVGERYIALWRTDGV 232 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~~ 232 (579)
+....+.|..|++...
T Consensus 238 adt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 238 AELLAHKIHVYEKHAN 253 (355)
T ss_dssp EEGGGTEEEEEEECTT
T ss_pred EeCCCCeEEEEEECCC
Confidence 7667789999998753
No 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.41 E-value=0.038 Score=52.48 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=94.0
Q ss_pred CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE
Q 008041 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~ 154 (579)
+.+++.|+.+ ..+.+||+.+++....-. .........+.+ +++.++.|+.+ ..+.+||+.+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 5566666654 569999999886532211 111111222222 66677777655 4689999887643222
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEec
Q 008041 155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~-----------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
+....... +++. -++++++.|+ ..+.+||..+.+-... +...... .++.. -+++.++.+|.
T Consensus 134 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~ 209 (306)
T 3ii7_A 134 PSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVF-VKDKIFAVGGQ 209 (306)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCE
T ss_pred CCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEE-ECCEEEEEeCC
Confidence 21111111 2222 3677777775 2388999988754322 1111111 12222 25666666553
Q ss_pred CC----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041 220 GE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 220 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 284 (579)
.. ..+.+||+.+.+-. .+..+........++. -+++.++.|+.+ ..+.+||..+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAA-------VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEE-------ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEE-------ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 21 35889998876532 1112222222222222 255677777643 46777887654
No 302
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.35 E-value=0.087 Score=50.59 Aligned_cols=178 Identities=11% Similarity=0.150 Sum_probs=97.3
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE-EeCCCCceeeEe-ecCCCCeeEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE-IDPLTGSLLGKF-RASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~i-wd~~~~~~~~~~-~~~~~~v~~l~ 166 (579)
+++++.+|.|+. ....|+.-.....++...+.++.+.+++.+++.+ .+|.++. +|- .+..-..+ ......+..+.
T Consensus 135 ~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~ 211 (327)
T 2xbg_A 135 AEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMG 211 (327)
T ss_dssp EEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEE
T ss_pred EEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeE
Confidence 444445565432 2222332222223456679999999988877665 4555544 342 12222222 22345788999
Q ss_pred EccCCCEEEEEC-CeEEEEECCCCeeeEEee-c---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeee
Q 008041 167 VSSDGKMLATAA-GQLKTFNCSDHKKMQKFS-G---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (579)
Q Consensus 167 ~~p~g~~l~~~~-~~i~vwd~~~~~~~~~~~-~---h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (579)
+.|++++++.+. |.+++.+.+.++.-..+. . +...+..+.+.+++..++++ .++.+ .+..+.++.- ..+.
T Consensus 212 ~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g--~~g~i-~~S~DgG~tW--~~~~ 286 (327)
T 2xbg_A 212 FTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG--GAGAL-LCSQDGGQTW--QQDV 286 (327)
T ss_dssp ECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE--STTCE-EEESSTTSSC--EECG
T ss_pred ECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe--CCCeE-EEeCCCCccc--EEcC
Confidence 999999888877 888776533344332222 1 22358889999888766654 46766 4555544322 1111
Q ss_pred ee-ecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEc
Q 008041 242 AM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (579)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (579)
.. ..+.. +..+.+. ++ ..+++++.+|.|.-++-
T Consensus 287 ~~~~~~~~-~~~v~~~-----~~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 287 DVKKVPSN-FYKILFF-----SP-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp GGTTSSSC-CCEEEEE-----ET-TEEEEECSTTEEEEECC
T ss_pred ccCCCCCC-eEEEEEE-----CC-CceEEEcCCceEEEEcC
Confidence 00 01222 2334443 33 44667778898877653
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.25 E-value=0.0011 Score=71.20 Aligned_cols=143 Identities=8% Similarity=-0.064 Sum_probs=83.0
Q ss_pred cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008041 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS 163 (579)
Q Consensus 87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~-~~~~~~v~ 163 (579)
.++++-...+.|.++++...... .+.........++++.|.+.+|+.+.. .+.|..+++. |.....+ ...-...+
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN 543 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSCSSCC
T ss_pred cEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCCCCcc
Confidence 33444445677888888765443 232222345678899997666555442 2678888864 3333332 22234567
Q ss_pred EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008041 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (579)
Q Consensus 164 ~l~~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~ 233 (579)
.|+|+|++..|+.+. +.|..+++........+. ........|++..+ .++.+....+.|..++..+++
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence 899999876666655 689999986433222222 11122345555443 444444456788888877654
No 304
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.20 E-value=0.044 Score=52.13 Aligned_cols=183 Identities=7% Similarity=0.004 Sum_probs=91.3
Q ss_pred CcEEEEEEC----C-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008041 86 SSLLVLGTG----G-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~----~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~ 150 (579)
+.+++.|+. + ..+.+||+.+++...... .........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 455566554 2 358999998876532110 111111222223 56666666533 468889987664
Q ss_pred eeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEec
Q 008041 151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 151 ~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
-... +........++.+ ++++++.|+ +.+.+||..+.+-.. .+....... ++... +++.++.+|.
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~ 224 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGY 224 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCB
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCC
Confidence 3221 2211112222222 677777776 368999998775322 111111111 22222 5666666653
Q ss_pred C----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041 220 G----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 220 ~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 284 (579)
. -..+.+||+.+.+-. .+..+........++. -+++.++.|+.+ ..+.+||..+.
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWT---FVAPMKHRRSALGITV-------HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCccceEEEEeCCCCcEE---ECCCCCCCccceEEEE-------ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 146899998876532 1112222111112222 245666666643 35677776654
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.13 E-value=0.036 Score=54.16 Aligned_cols=147 Identities=13% Similarity=0.188 Sum_probs=94.8
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe-----------
Q 008041 127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK----------- 190 (579)
Q Consensus 127 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~~----------- 190 (579)
.+|..++.+ .++.||.-++.....-+.++.. ...+..+..+|+|++||..+ ..|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 455555555 4577887777644444444433 22678899999999999998 899998887321
Q ss_pred -eeEEeec------CCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccc-----eeeeeeecCceeEEeEEe
Q 008041 191 -KMQKFSG------HPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRCI 255 (579)
Q Consensus 191 -~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 255 (579)
..+.+.- ...+|..+.|+|- +..|++-. .|+.|++||+......+. ...+........+..++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1223321 2577999999995 34677776 699999999987432211 011122222345667778
Q ss_pred cCCcccCCCcEEEEEE--cCCeEEEEE
Q 008041 256 DNGGVDDAGLYVLAIS--ETGVCYIWY 280 (579)
Q Consensus 256 ~~~~~~~~~~~l~~~~--~dg~i~iwd 280 (579)
. +++-.|.+.+ ..|.|+-..
T Consensus 188 g-----~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 188 S-----KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp C-----TTSSCEEEEECTTSCEEEEES
T ss_pred c-----CCCcEEEEEecCCCCCEEEEC
Confidence 7 5676676655 778887654
No 306
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.11 E-value=0.11 Score=49.42 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=72.9
Q ss_pred CcEEEEEEC-----C------CeEEEEEccCCeEEEEecCCCCCC---EEEEEEccCCCEEEEEeCC--------CcEEE
Q 008041 86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHPGG---VSAISFATHGSCIYSAGAD--------GMVCE 143 (579)
Q Consensus 86 ~~~l~~~~~-----~------g~i~iwd~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~l~s~~~d--------~~v~i 143 (579)
+.+++.|+. . ..+..||+.+++-.. + ..-..+ ...+.+ ++..++.|+.+ ..+.+
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M-PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C-CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C-CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence 566677763 1 128889998877532 1 111111 112222 56666666632 45889
Q ss_pred EeCCCCceee--EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCC
Q 008041 144 IDPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNG 211 (579)
Q Consensus 144 wd~~~~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~ 211 (579)
||+.+++-.. .+...... .+++ .-++++++.|+ +.+.+||..+.+-.. .++..... .++.. -++
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~ 197 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATV-HDG 197 (315)
T ss_dssp EETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETT
T ss_pred ECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEE-ECC
Confidence 9987764221 12111111 1222 24677777775 368999998775322 11111111 12222 356
Q ss_pred CEEEEEecCCC----eEEEEEcCCCc
Q 008041 212 KYVLSSAVGER----YIALWRTDGVK 233 (579)
Q Consensus 212 ~~l~s~~~~d~----~i~vwd~~~~~ 233 (579)
+.++.+|..+. .+.+||+.+.+
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEEeccCCCCccceEEEEECCCCe
Confidence 77777764322 58888988765
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.07 E-value=0.41 Score=50.42 Aligned_cols=185 Identities=5% Similarity=-0.028 Sum_probs=111.5
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC 164 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (579)
+.++.+-..++.|+.+++........+ ........++++.+.+..|+.+ ...+.|.+.++........+...-.....
T Consensus 49 ~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~ 127 (628)
T 4a0p_A 49 NRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA 127 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEE
T ss_pred CEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCccc
Confidence 334444455677888888765433222 2222456789998766665544 45678999998644322223233456799
Q ss_pred EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceee
Q 008041 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (579)
Q Consensus 165 l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~ 240 (579)
|+++|....|..+. +.|...++..... ..+...-.....|+++++++.|+.+-...+.|..+++...... .+
T Consensus 128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v~ 203 (628)
T 4a0p_A 128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---VI 203 (628)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EE
T ss_pred EEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---Ee
Confidence 99999544444443 5788888765433 3333344567899999987777777667789999999765422 11
Q ss_pred eeeecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCCce
Q 008041 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (579)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 285 (579)
. ........ +++. . + .|+... ..+.|...|..+++
T Consensus 204 ~--~~l~~P~g-lav~-----~-~-~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 204 A--DDLPHPFG-LTQY-----Q-D-YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp E--ECCSCEEE-EEEE-----T-T-EEEEEETTTTEEEEEETTTCC
T ss_pred e--ccCCCceE-EEEE-----C-C-EEEEecCCCCEEEEEECCCCC
Confidence 1 11222222 3332 2 3 444444 47888888876664
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.06 E-value=0.085 Score=50.65 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCC
Q 008041 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDH 189 (579)
Q Consensus 115 ~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~g~~l~~~~-~~i~vwd~~~~ 189 (579)
.....+..+.+.+++..+ .++.+|.++..+...|+....+.. ....+.++.+.|++.+++++. +.| .+..+.+
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG 279 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence 345678999999988655 555788888775333443333321 123588999999888888887 766 4455556
Q ss_pred eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 190 ~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
+.-..+. .+...+..+.|.++++ +++++ .+|.|.-++-
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILLRYVT 320 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEEEECC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEEEEcC
Confidence 5444443 2345678899987665 44555 5887776653
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.05 E-value=0.25 Score=47.92 Aligned_cols=197 Identities=11% Similarity=0.144 Sum_probs=95.1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|.|||+++++ ..+|.|.+++ ++... .+.... .+... ......+++.+.-.. +..
T Consensus 34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~-~~~~~~------v~~~g------~~~p~gia~~pdf~~------~g~ 91 (352)
T 2ism_A 34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLS-TYAELS------VYHRG------ESGLLGLALHPRFPQ------EPY 91 (352)
T ss_dssp EEEEECTTSCEEEE-ETTTEEEEEE--TTEEE-EEEECC------CCCST------TCSEEEEEECTTTTT------SCE
T ss_pred eEEEEcCCCeEEEE-eCCCeEEEEE--CCCcc-Eeecce------EeecC------CCCceeEEECCCCCC------CCE
Confidence 35699999985554 5679999998 45432 111110 00000 011223444432110 234
Q ss_pred EEEEECC------CeEEEEEccCCe-----EEEE-ec--CCCCCCEEEEEEccCCCEEEEEeC-------------CCcE
Q 008041 89 LVLGTGG------GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMV 141 (579)
Q Consensus 89 l~~~~~~------g~i~iwd~~~~~-----~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~~~-------------d~~v 141 (579)
|+++... +.|..|+...+. .+.. +. .+.......++|.|||..+++.+. .|.|
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I 171 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKI 171 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEE
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEE
Confidence 4444432 568888876542 1211 21 111112368999999976555432 2566
Q ss_pred EEEeCCCCc-------------eeeEe-ecCCCCeeEEEEcc-CCCEEEEEC--CeE------EEEECCCCe--------
Q 008041 142 CEIDPLTGS-------------LLGKF-RASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK-------- 190 (579)
Q Consensus 142 ~iwd~~~~~-------------~~~~~-~~~~~~v~~l~~~p-~g~~l~~~~--~~i------~vwd~~~~~-------- 190 (579)
.-++.. ++ ....+ .++ .....++|+| +|.++++-. +.+ .+.-+..+.
T Consensus 172 ~ri~~d-G~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 172 LRLTPE-GEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp EEECTT-SSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred EEEcCC-CCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 666654 21 11111 122 2356789999 566555433 231 132222222
Q ss_pred ----------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 191 ----------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 191 ----------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+..+..| .....++| .+|..+++. ...+.|...++...
T Consensus 250 g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~-~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 250 GRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAG-LRGQALLRLVLEGE 298 (352)
T ss_dssp SCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEE-TTTTEEEEEEEEEE
T ss_pred CCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEE-CCCCEEEEEEECCC
Confidence 22233222 34567777 456555443 35677777776643
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.05 E-value=0.16 Score=53.40 Aligned_cols=185 Identities=10% Similarity=0.036 Sum_probs=106.6
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCce-eeEeecCCCCeeEEE
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL-LGKFRASTKGISCMA 166 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~v~iwd~~~~~~-~~~~~~~~~~v~~l~ 166 (579)
++.-.....|+..++........+.......+.+++|++.+..++.+. ..+.|..+++..... ...+...-..+..++
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlA 90 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 90 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEE
Confidence 455556788999988765321122223445688999999777766554 467899999865432 223333335788999
Q ss_pred EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-CCeEEEEEcCCCccccceeeee
Q 008041 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVKKQSASCVLA 242 (579)
Q Consensus 167 ~~p~g~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~-d~~i~vwd~~~~~~~~~~~~~~ 242 (579)
+++.+..++.+. +.|.+.+++.......+...-.....|++.|.+.+|+.+... .+.|...++...... .+.
T Consensus 91 vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~---~l~- 166 (619)
T 3s94_A 91 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---III- 166 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE-
T ss_pred EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE---EEE-
Confidence 999666666554 799999987543322222344556789999976666655311 356777776654322 111
Q ss_pred eecCceeEEeEEecCCcccCCCcEEEEEE-cCCeEEEEEcCC
Q 008041 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN 283 (579)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 283 (579)
...-.....+.++ +++..|..+. ..+.|..+|++.
T Consensus 167 -~~~~~~P~Glald-----~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 167 -NSEIYWPNGLTLD-----YEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp -CSSCSSEEEEEEE-----TTTTEEEEEETTTCCEEEESSSC
T ss_pred -eCCCCCCcEEEEE-----ccCCEEEEEeCCCCeEEEecCCC
Confidence 1122233455565 6555555554 356777777654
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.04 E-value=0.032 Score=56.43 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=89.6
Q ss_pred EEEEEEC-CCeEEEEEccCCeEEEEecCC--CCCCEEEEEE-------ccCCCEEEEEeCCC-------cEEEEeCCC-C
Q 008041 88 LLVLGTG-GGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-G 149 (579)
Q Consensus 88 ~l~~~~~-~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~-------~~~~~~l~s~~~d~-------~v~iwd~~~-~ 149 (579)
.|+++.. .+.|++.|+.++.+......+ .......++| +++|++++.+...+ .|.+++... +
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G 232 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG 232 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence 3444444 466999999988876433221 2335899999 99999777776544 266776433 2
Q ss_pred cee-----eEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-------CCee-----------eEEe-e-cCCCC
Q 008041 150 SLL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQKF-S-GHPGA 201 (579)
Q Consensus 150 ~~~-----~~~~~~~~~v~~l~~~p~g~~l~~~~---~~i~vwd~~-------~~~~-----------~~~~-~-~h~~~ 201 (579)
... ..+.. ......++++|++..|..+. +.|+.+|+. ++.. ...+ . +....
T Consensus 233 ~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~ 311 (496)
T 3kya_A 233 TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW 311 (496)
T ss_dssp CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence 221 22222 22456789999555555444 789999987 5543 1122 1 22344
Q ss_pred EEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008041 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 202 v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
...|+|+|+|++|+.+-...+.|+.++...
T Consensus 312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 578999999996666555678899877644
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.00 E-value=0.29 Score=47.48 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=98.7
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (579)
..++|.|||++++ +..+|+|++++ .+++ ..+.... + +.. + .....-+++.+.-.. +..
T Consensus 32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~ 89 (354)
T 3a9g_A 32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSW 89 (354)
T ss_dssp EEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCE
T ss_pred eEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCE
Confidence 4569999998555 45569999997 4555 2222110 0 000 0 011223344332111 234
Q ss_pred EEEEEC----C----CeEEEEEccCC-------eEEEE-ec--CCCCCCEEEEEEccCCCEEEEEeC-------------
Q 008041 89 LVLGTG----G----GDVLALAVSAG-------QLKWR-LS--DCHPGGVSAISFATHGSCIYSAGA------------- 137 (579)
Q Consensus 89 l~~~~~----~----g~i~iwd~~~~-------~~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~~~------------- 137 (579)
|+++.. + +.|..|+...+ +.+.. +. ..|. ...+.|.|||.++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCC
Confidence 444443 2 45777777654 11111 11 1233 467999999986665432
Q ss_pred CCcEEEEeCCCCce--------eeEe-ecCCCCeeEEEEcc-CCCEEEEECC-----eEEEEECCCCe------------
Q 008041 138 DGMVCEIDPLTGSL--------LGKF-RASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSDHK------------ 190 (579)
Q Consensus 138 d~~v~iwd~~~~~~--------~~~~-~~~~~~v~~l~~~p-~g~~l~~~~~-----~i~vwd~~~~~------------ 190 (579)
.|.|..++.. ++. ...+ .++. ....++|+| +|.++++-.+ .|.+.. .+.
T Consensus 168 ~G~I~ri~~d-G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 168 AGKILRVDEE-GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAG 243 (354)
T ss_dssp SSEEEEECTT-SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCC
T ss_pred CeEEEEEcCC-CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCC
Confidence 2456666653 321 1111 2232 356899999 6766665442 344432 221
Q ss_pred ------eeEEeecCCCCEEEEEEe-------cCCCEEEEEecCCCeEEEEEcCCC
Q 008041 191 ------KMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 191 ------~~~~~~~h~~~v~~l~~s-------~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+..+.........+.|. .+|.++++. ...+.|...++...
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN 297 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence 223331122356788884 466665554 35677888887753
No 313
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.83 E-value=0.55 Score=53.18 Aligned_cols=140 Identities=13% Similarity=0.162 Sum_probs=87.0
Q ss_pred CcEEEEEE----------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008041 86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (579)
Q Consensus 86 ~~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~- 154 (579)
..++++|+ ..|.|++|++..++..........++|++++-- +| ++++| ....|++|++...+.++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence 57889988 357799999986665433333456889998743 45 45444 357899999976654441
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC--CeEEE--EECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~--~~i~v--wd~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~ 229 (579)
.... ..+..+.....++++++|+ ..|.+ |+...++....- ..+...++++.|-.++ .++.+ +.+|.+.+...
T Consensus 921 ~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~a-D~~gNl~vl~~ 997 (1158)
T 3ei3_A 921 CNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGA-ENAFNLFVCQK 997 (1158)
T ss_dssp EEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEE-ETTSEEEEEEE
T ss_pred eecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEE-cCCCcEEEEec
Confidence 1111 1233334434578899998 55544 555555433222 2245678888887665 44444 47899998876
Q ss_pred CC
Q 008041 230 DG 231 (579)
Q Consensus 230 ~~ 231 (579)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 55
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.81 E-value=0.17 Score=47.70 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=74.7
Q ss_pred CcEEEEEECC-----CeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeeE
Q 008041 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~ 154 (579)
+.+++.|+.+ ..+.+||+.+++-...- .......-.++.+ +++.++.|+.+ ..+.+||+.+.+-...
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 5556666543 35899999887643211 1111111222222 66667777654 4688999877643222
Q ss_pred --eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC--
Q 008041 155 --FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE-- 221 (579)
Q Consensus 155 --~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d-- 221 (579)
+........++. -++++++.|+ +.+.+||..+.+-... +....... ++. .-+++.++.+|..+
T Consensus 191 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~ 266 (301)
T 2vpj_A 191 TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GAT-VLRGRLYAIAGYDGNS 266 (301)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSS
T ss_pred CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEE-EECCEEEEEcCcCCCc
Confidence 211111222222 2677777776 3689999988754322 11111111 222 23566666665322
Q ss_pred --CeEEEEEcCCCc
Q 008041 222 --RYIALWRTDGVK 233 (579)
Q Consensus 222 --~~i~vwd~~~~~ 233 (579)
..+.+||+.+.+
T Consensus 267 ~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 267 LLSSIECYDPIIDS 280 (301)
T ss_dssp BEEEEEEEETTTTE
T ss_pred ccccEEEEcCCCCe
Confidence 357888887765
No 315
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.78 E-value=0.28 Score=46.65 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred EEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCceeeE--eecCCCCeeEEEE
Q 008041 98 VLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLGK--FRASTKGISCMAV 167 (579)
Q Consensus 98 i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~--~~~~~~~v~~l~~ 167 (579)
+..||+.+++-...-. .........+.+ ++..++.|+.+ ..+.+||+.+.+-... +...... .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE
Confidence 7889988876532110 111111122222 56677777654 3578889876643221 1111111 12222
Q ss_pred ccCCCEEEEEC--------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCc
Q 008041 168 SSDGKMLATAA--------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVK 233 (579)
Q Consensus 168 ~p~g~~l~~~~--------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d----~~i~vwd~~~~~ 233 (579)
.++++++.|+ +.+.+||..+.+-... +...... .++.. -+++.++.+|..+ ..+.+||+.+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 4677777775 2589999988754322 1111111 12222 3566666666322 247788888765
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.011 Score=56.57 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=105.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecC---
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRAS--- 158 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~--- 158 (579)
+.++++++.||.|+-+|..+|+..+++......++....- .+.+..++.+ +.||.|+.+|..+|.....+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 5689999999999999999999999885432233332211 0112244444 58999999999888554443321
Q ss_pred -CCCeeE---EEE-c----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC--CC-----EEEEEEe-----cCCCEEE
Q 008041 159 -TKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL 215 (579)
Q Consensus 159 -~~~v~~---l~~-~----p~g~~l~~~~--~~i~vwd~~~~~~~~~~~~h~--~~-----v~~l~~s-----~~~~~l~ 215 (579)
..++.. ..+ . ..+..+++|+ |.++..|.++|+.+.++.... +. ..|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 112211 001 0 0344555565 899999999999998885321 11 1111110 1124555
Q ss_pred EEecCCCeEEEEEcCCCccccceeeee-eecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeec
Q 008041 216 SSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (579)
Q Consensus 216 s~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (579)
.+. .+..+.+.+ ++++ . ....+. .......... ...-....|+.+ +.++.||.|.-+|..+|+.+.
T Consensus 170 ig~-~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~--~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGK-TIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPL--ALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEE-EEEECEECC-TTSC-C-CCCEEEEEECCTTTHHH--HTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred Eec-ceEEEEEEC-CCCC-e-EEEeccccccccccccc--ccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 554 466666666 3332 1 111000 0000000000 000000134566 457899999999999888764
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.012 Score=56.40 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=73.8
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeccCc-cccccccccccccccccccccceEEeeecccccccccCCcEEEEE-ECC
Q 008041 18 DYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGG 95 (579)
Q Consensus 18 ~~lasg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~-~~~ 95 (579)
..++.++.||.|.-.|..+|+....++... .++.. .. +. .. . .++..++.. +.|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~---~~----~~-~~-----------~-----~~~~~~vv~p~~d 66 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE---IQ----EP-SR-----------L-----ETYETLIIEPFGD 66 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE---CC----CS-CT-----------T-----TSSEEEEECCSTT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE---ec----CC-cc-----------c-----cCCcEEEEEECCC
Confidence 478889999999999999999999886430 01100 00 00 00 0 012333343 689
Q ss_pred CeEEEEEccCCeEEEEecCC---CCCCEEE---EEE-----ccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 96 GDVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~---h~~~V~~---l~~-----~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
|.|+.++..+|...+.+... ..+++.. ... ...+..+++++.+|++...|+.+|+.+..+..
T Consensus 67 G~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 67 GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999988665443211 2233332 000 01355789999999999999999999998864
No 318
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.64 E-value=0.46 Score=44.67 Aligned_cols=234 Identities=12% Similarity=0.144 Sum_probs=137.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEE
Q 008041 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (579)
Q Consensus 11 ~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (579)
.-.+|..+.+|.=. ..++.|||+++.+.+..+.- ..++..-.|.+ .+.|+
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-------------------~e~VvfWkWis----------~~~L~ 121 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWIS----------LNTVA 121 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCEEEEEECS----------SSEEE
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-------------------CCccEEEEecC----------CCeEE
Confidence 34689888888766 57899999999988876541 22344555665 33455
Q ss_pred EEECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCC
Q 008041 91 LGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAST 159 (579)
Q Consensus 91 ~~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~~~~~~~~ 159 (579)
..+ +..|+.|++.......+.+.-| ...|..-..+++.++++..+ -.|.+.+|..+. +.-+.+.+|-
T Consensus 122 lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 199 (365)
T 2xzh_A 122 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 199 (365)
T ss_dssp EEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee
Confidence 544 4579999997643333333223 35678888889999866543 236788898754 4445677775
Q ss_pred CCeeEEEEcc---CCCEEEEEC-----CeEEEEECCCC---e------eeEEeec---CCCCEEEEEEecCCCEEEEEec
Q 008041 160 KGISCMAVSS---DGKMLATAA-----GQLKTFNCSDH---K------KMQKFSG---HPGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 160 ~~v~~l~~~p---~g~~l~~~~-----~~i~vwd~~~~---~------~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~ 219 (579)
.....+.+.- ..++++.+. +.+++-++... . .+..+.. ...-.-++..++.-..++.-.
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT- 278 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT- 278 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE-
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe-
Confidence 5443333221 112344433 58888887432 1 1111111 123345677777666666655
Q ss_pred CCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceee
Q 008041 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (579)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (579)
.-|.|++||+.++... ....+......+. ... .+..=+++....|.|.--.++..+.+
T Consensus 279 K~G~ihlyDleTgt~i---~~nrIS~d~iF~t-a~~------~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 279 KYGYIHLYDLETGTCI---YMNRISGETIFVT-APH------EATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp TTSEEEEEETTTCCEE---EEEECCSSCEEEE-EEE------GGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCcEEEEEEcccCcEE---EEeccCCCceEEe-ccc------CCCCcEEEEcCCCEEEEEEECcccEe
Confidence 6899999999999743 2222223332222 222 23344556667887776666555443
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.58 E-value=1.1 Score=50.63 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=101.9
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEE---ccC-CCEEEEEe----------CCCcEEEEeCCCCceeeEe-ecCCC
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISF---ATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKF-RASTK 160 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~---~~~-~~~l~s~~----------~d~~v~iwd~~~~~~~~~~-~~~~~ 160 (579)
+.|++.|..+.+.+..+.-.....+.+++. ..+ ..+++.|. ..|.|++|++..++..... ...++
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 458999999888765554334445555553 322 46777775 3578999998755432221 12356
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--CCccccce
Q 008041 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSAS 238 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~--~~~~~~~~ 238 (579)
+|++++-- +|+++++.++.|++|++...+.++.-..+...|..+.....+.+++.+-. -+.+.++..+ ..+..
T Consensus 887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~L~--- 961 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGNFE--- 961 (1158)
T ss_dssp CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTEEE---
T ss_pred cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCeEE---
Confidence 88888755 56666666799999999876544411111222333333334667777653 4456655443 33211
Q ss_pred eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
. ..-+.....+.++.+- +...++.+..+|.+.++..+.
T Consensus 962 ~-~a~D~~~~~vta~~~l------d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 962 E-IARDFNPNWMSAVEIL------DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp E-EEECCSCBCEEEEEEE------ETTEEEEEETTSEEEEEEECT
T ss_pred E-EEeecccccEEEEEEE------ccCcEEEEcCCCcEEEEecCC
Confidence 2 2222333334444442 235778889999999987543
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.56 E-value=0.16 Score=57.32 Aligned_cols=195 Identities=11% Similarity=0.097 Sum_probs=115.7
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecC----CC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAS----TK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~----~~ 160 (579)
...|++- ....+.|||+.+...+.... ...+|.--.|-.+... +-. .+..|+-|++.. ..+++.|.-| ..
T Consensus 77 ~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 77 SKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNTV-ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCCCee-EEE-cCCeEEEeccCCCCccHHHHhcchhcccC
Confidence 3444444 36779999999877654442 3456776677654433 333 256799999964 2454455544 34
Q ss_pred CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEe--cCCCEEEEEec---CCCeEEE
Q 008041 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL 226 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~---------~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~---~d~~i~v 226 (579)
.|..-..+++.++++..+ |.+.+|.++.+. -..+.||.+....+... +....+++-+. ..+.++|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 788888899999888654 789999886543 33456676554444332 11122333221 1267888
Q ss_pred EEcCCC-c--cc-cce---eeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCceeecccC
Q 008041 227 WRTDGV-K--KQ-SAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (579)
Q Consensus 227 wd~~~~-~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (579)
-++... . .. ... ..+.-.......-.+..+ +.-..+...+.-|.+++||+.|+..+...+
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence 888553 1 00 000 111111222333334444 566778888999999999999998876544
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.54 E-value=0.3 Score=46.11 Aligned_cols=142 Identities=10% Similarity=0.031 Sum_probs=74.4
Q ss_pred CcEEEEEECC------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCC
Q 008041 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTG 149 (579)
Q Consensus 86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~---------d~~v~iwd~~~~ 149 (579)
+.+++.|+.+ ..+.+||+.+++-...-. ........++.+ +++.++.|+. -..+.+||+.+.
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 5566666654 349999999886532211 111111122222 5666666653 345889998876
Q ss_pred ceeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEe
Q 008041 150 SLLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 150 ~~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
+-... +...... .++... ++++++.|+ ..+.+||..+.+-.. .++........+.+ +++.++.+|
T Consensus 180 ~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 255 (306)
T 3ii7_A 180 TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG 255 (306)
T ss_dssp EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence 43222 1111111 122222 677777776 368999998875322 12111111222222 566666666
Q ss_pred cC----CCeEEEEEcCCCc
Q 008041 219 VG----ERYIALWRTDGVK 233 (579)
Q Consensus 219 ~~----d~~i~vwd~~~~~ 233 (579)
.. -..+.+||+.+.+
T Consensus 256 ~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BCSSSBCCEEEEEETTTTE
T ss_pred cCCCeeeeeEEEEcCCCCe
Confidence 31 1468888888765
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.49 E-value=0.21 Score=47.09 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=74.2
Q ss_pred CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCcee
Q 008041 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLL 152 (579)
Q Consensus 86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~ 152 (579)
+.+++.|+.++ .+.+||+.+++-...-. ........++.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 56667776553 48899998876532211 111111122222 56666666542 45889998776432
Q ss_pred eE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC
Q 008041 153 GK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (579)
Q Consensus 153 ~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~~d 221 (579)
.. +....... +++. -++++++.|+ +.+.+||..+.+-... +...... .++. .-+++.++.+|...
T Consensus 187 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~-~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 187 YIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVC-AVNGLLYVVGGDDG 262 (302)
T ss_dssp EECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEECCBCS
T ss_pred ECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEE-EECCEEEEECCcCC
Confidence 21 22111122 2222 2677777776 3699999988754322 1111111 1222 23566666666321
Q ss_pred ----CeEEEEEcCCCc
Q 008041 222 ----RYIALWRTDGVK 233 (579)
Q Consensus 222 ----~~i~vwd~~~~~ 233 (579)
..+.+||+.+.+
T Consensus 263 ~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 263 SCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSBCCCEEEEETTTTE
T ss_pred CcccccEEEEcCCCCe
Confidence 248888888764
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.44 E-value=0.53 Score=45.51 Aligned_cols=189 Identities=11% Similarity=0.005 Sum_probs=89.5
Q ss_pred CcEEEEEEC----------CCeEEEEEccCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCC---------------
Q 008041 86 SSLLVLGTG----------GGDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGAD--------------- 138 (579)
Q Consensus 86 ~~~l~~~~~----------~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d--------------- 138 (579)
+.+++.|+. ..++.+||+.+++-....... ......++. .+++.++.|+.+
T Consensus 66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcC
Confidence 455666554 135999999988753211111 111222233 467777777754
Q ss_pred ------------------------CcEEEEeCCCCceee--EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEE
Q 008041 139 ------------------------GMVCEIDPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTF 184 (579)
Q Consensus 139 ------------------------~~v~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--------~~i~vw 184 (579)
..+.+||+.+.+-.. .+......-.+++.. ++++++.|+ ..+.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~ 222 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFEL 222 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEE
Confidence 578999987764322 222111111233333 667777765 257778
Q ss_pred EC--CCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCC---------------------CeEEEEEcCCCcccccee
Q 008041 185 NC--SDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------------------RYIALWRTDGVKKQSASC 239 (579)
Q Consensus 185 d~--~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~s~~~~d---------------------~~i~vwd~~~~~~~~~~~ 239 (579)
|+ .+.+-. ..+..........+...+++.++.+|..+ ..+.+||+.+.+-. .
T Consensus 223 d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~ 299 (357)
T 2uvk_A 223 DFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---K 299 (357)
T ss_dssp ECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---E
T ss_pred EecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---e
Confidence 77 443321 11111111111112334566666665211 24778998876532 2
Q ss_pred eeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC------eEEEEEcCCceee
Q 008041 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG------VCYIWYGQNIEEL 287 (579)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~ 287 (579)
+..+..+.....++. .+++.++.|+.++ .+.++++++.+.+
T Consensus 300 ~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 300 SGELSQGRAYGVSLP-------WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEECSSCCBSSEEEE-------ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred CCCCCCCcccceeEE-------eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 222322222212222 3567777777542 3555677666544
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.42 E-value=0.45 Score=45.13 Aligned_cols=181 Identities=8% Similarity=0.076 Sum_probs=92.0
Q ss_pred EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----C-------CcEEEEeCCCCceeeE--
Q 008041 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-------GMVCEIDPLTGSLLGK-- 154 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d-------~~v~iwd~~~~~~~~~-- 154 (579)
+++.|+ ..+.+||+.+++-...-...............++..++.|+. + ..+..||..+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344444 689999999988543222211122233333457777777773 1 1277889877643221
Q ss_pred eecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCC-
Q 008041 155 FRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (579)
Q Consensus 155 ~~~~~~~v~~l~~~p~g~~l~~~~----------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~d- 221 (579)
+....... +++.. ++++++.|+ +.+.+||..+.+-.. .++..... .++. ..+++.++.+|..+
T Consensus 85 ~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSD 160 (315)
T ss_dssp BSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTT
T ss_pred CCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCC
Confidence 11111111 22222 566777665 258999998875322 11111111 1222 24566666665312
Q ss_pred ----CeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-----eEEEEEcCCc
Q 008041 222 ----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (579)
Q Consensus 222 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 284 (579)
..+.+||+.+.+-. .+..+..+.....++. -+++.++.|+.++ .+.+||..+.
T Consensus 161 ~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWK---ELAPMQTARSLFGATV-------HDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp SCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CcccceEEEEeCCCCeEE---ECCCCCCchhceEEEE-------ECCEEEEEeccCCCCccceEEEEECCCC
Confidence 35888998876532 1112222221122222 2557777776644 5777887665
No 325
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.27 E-value=0.34 Score=42.77 Aligned_cols=137 Identities=10% Similarity=0.013 Sum_probs=79.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee------e
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------G 153 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------~ 153 (579)
..+|+....| +++.=.+..+.. ..++-++-=..+..++|+|+|.+.+. .+|.++-.+..+.... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4456666666 666555554431 11221111236789999998875444 7888888886552211 1
Q ss_pred Eeec-CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeee------EEee-cCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008041 154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM------QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (579)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~------~~~~-~h~~~v~~l~~s~~~~~l~s~~~~d~~i~ 225 (579)
.+-. .-....++.|.|+|.+.++..|.|+-++-.+...- .++. +-=..+..|.|.|+|...++. |+.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence 1110 11135889999999999996699988875332110 1111 111457899999999766553 66654
Q ss_pred EEE
Q 008041 226 LWR 228 (579)
Q Consensus 226 vwd 228 (579)
-+.
T Consensus 158 r~~ 160 (236)
T 1tl2_A 158 KAL 160 (236)
T ss_dssp EEC
T ss_pred ecC
Confidence 433
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.17 E-value=0.22 Score=47.14 Aligned_cols=183 Identities=10% Similarity=0.007 Sum_probs=91.9
Q ss_pred CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC----C-----CcEEEEeCCCCce
Q 008041 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~----d-----~~v~iwd~~~~~~ 151 (579)
+.+++.|+.+ ..+.+||+.+++....-. ......-..+.+ ++..++.|+. + ..+.+||+.+.+-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 5566666643 359999999887542110 101111122222 5666666665 2 4688999876642
Q ss_pred eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008041 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
... +........++.+ ++++++.|+ ..+.+||..+.+-.. .+.........+.+ +++.++.+|..
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 221 2211112222222 677777776 368999998775332 11111111122222 56666666532
Q ss_pred ----CCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcC-----CeEEEEEcCCc
Q 008041 221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (579)
Q Consensus 221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 284 (579)
-..+.+||+.+.+-. .+..+........++. -+++.++.|+.+ ..+.+||..+.
T Consensus 179 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCV-------LHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SSCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCcCceEEEEeCCCCeEe---eCCCCCCccccceEEE-------ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 145888998776532 1111112211112222 245666666554 45778887654
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.16 E-value=1.1 Score=43.92 Aligned_cols=234 Identities=13% Similarity=0.133 Sum_probs=137.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEE
Q 008041 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (579)
Q Consensus 10 ~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (579)
+.-.+|..+.+|.=. ..++.|||+++...+..+.- ..++..-.|.+. +.|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-------------------~e~VvfWkWis~----------~~l 119 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL----------NTV 119 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEEEET----------TEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-------------------CCCceEEEecCC----------CeE
Confidence 334688888888765 56899999999988776541 224455667764 334
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecC
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS 158 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~~~~~~~ 158 (579)
+..+ +..|+-|++.......+.+.-| ...|..-..+++.++++..+ -.|.+.+|..+.+ .-+.+.+|
T Consensus 120 ~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 120 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred EEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 4443 4679999997643333333323 35688888899999866443 2467889997544 44567777
Q ss_pred CCCeeEEEEccC---CCEEEEEC-----CeEEEEECCCC--------ee-eEEe-e--cCCCCEEEEEEecCCCEEEEEe
Q 008041 159 TKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH--------KK-MQKF-S--GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 159 ~~~v~~l~~~p~---g~~l~~~~-----~~i~vwd~~~~--------~~-~~~~-~--~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
-.....+.+.-+ .++++.+. +.+++.++... +. +..+ + ....-..++..++.-..++.-.
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT 277 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT 277 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence 665544443311 12334332 58888888542 11 1111 1 1123345677887766666665
Q ss_pred cCCCeEEEEEcCCCccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCcee
Q 008041 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (579)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (579)
.-|.|++||+.++... +.-.-....+=..+.. ....=+++....|.|.--.++..+.
T Consensus 278 -K~G~i~lyDleTgt~i-----~~nrIs~~~iF~t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 278 -KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp -TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTCEEEEEEECTTTH
T ss_pred -cCceEEEEecccceee-----eeecccCCceEEeccc-----CCCCcEEEEccCceEEEEEEccccc
Confidence 6899999999999743 3322222222222222 3334455566777776655554443
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.97 E-value=0.64 Score=44.06 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred CcEEEEEECC-------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCce
Q 008041 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSL 151 (579)
Q Consensus 86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------d~~v~iwd~~~~~~ 151 (579)
+.+++.|+.+ ..+.+||+.+++-...-. ......-.++. .+++.++.|+. -..+.+||+.+.+-
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 5566777653 248899998876542210 10001111222 36666666653 24589999887642
Q ss_pred eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCee
Q 008041 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK 191 (579)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------~~i~vwd~~~~~~ 191 (579)
... +...... .+++. -++++++.|+ ..+.+||..+.+-
T Consensus 188 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 188 KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 221 2111111 22222 2677777775 3688999887653
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.96 E-value=0.051 Score=53.10 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=78.0
Q ss_pred cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeeccccccccc
Q 008041 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (579)
Q Consensus 5 ~V~~l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (579)
.|+.+ ..||+|++||..+. ..|.|-.+-.+.....-.+....+....|...-........+..+.|+|....
T Consensus 67 ~i~ql--vlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~----- 138 (452)
T 3pbp_A 67 DTFHV--ISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR----- 138 (452)
T ss_dssp TTCEE--EECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-----
T ss_pred ceeEE--EECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-----
Confidence 45444 89999999998874 57888887633211000000011122222221001112456888999998766
Q ss_pred CCcEEEEEECCCeEEEEEccCCeE-EEEec--------CCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEe
Q 008041 85 GSSLLVLGTGGGDVLALAVSAGQL-KWRLS--------DCHPGGVSAISFATHGSCIYSAG--ADGMVCEID 145 (579)
Q Consensus 85 ~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~--------~~h~~~V~~l~~~~~~~~l~s~~--~d~~v~iwd 145 (579)
+..|++-+.|+.|++||+..... ...+. ......|.+++|.+++=.|+..+ ..|.|+-.-
T Consensus 139 -ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 139 -DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp -GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred -CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 78999999999999999986321 11111 12225688888888665566644 666665543
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.89 E-value=1.4 Score=42.64 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCe
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ 38 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~ 38 (579)
..++|.|||++|..+...|+|++++. .+.
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~ 49 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQA-GKG 49 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEET-TTE
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeC-CCc
Confidence 45699999994445566899999985 344
No 331
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.28 E-value=0.97 Score=43.67 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=61.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEee---cCCCCeeEEEEccC---CCEE-EEEC-------CeE
Q 008041 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFR---ASTKGISCMAVSSD---GKML-ATAA-------GQL 181 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~---~~~~~v~~l~~~p~---g~~l-~~~~-------~~i 181 (579)
...++++|.|+|+. +.+..+|.|++++ +++. +..+. ........|+++|+ +..| ++-. +.|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45789999999984 4556779999998 4442 11111 12347899999998 4444 4433 467
Q ss_pred EEEECCCCe-----ee-EEee---cCCCCEEEEEEecCCCEEEEEe
Q 008041 182 KTFNCSDHK-----KM-QKFS---GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 182 ~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
..|+...++ .+ ..+. +.......++|.|||..+++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 788876431 12 2233 1112346899999997666543
No 332
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.22 E-value=2.4 Score=40.93 Aligned_cols=127 Identities=13% Similarity=0.187 Sum_probs=73.4
Q ss_pred EEEEEECCCeEEEEEccCCe-EEEEe--cCCCCCCEEEEEEccC---CCEEEEEeC----C----CcEEEEeCCCC--c-
Q 008041 88 LLVLGTGGGDVLALAVSAGQ-LKWRL--SDCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S- 150 (579)
Q Consensus 88 ~l~~~~~~g~i~iwd~~~~~-~~~~~--~~~h~~~V~~l~~~~~---~~~l~s~~~----d----~~v~iwd~~~~--~- 150 (579)
.++++...|.|++++ ..++ .+..+ .........+++|+|+ +..|+.+.. + ..|..|+...+ .
T Consensus 41 ~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~ 119 (354)
T 3a9g_A 41 RYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKL 119 (354)
T ss_dssp EEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCE
T ss_pred eEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCc
Confidence 377778889999997 3444 22221 1122356899999997 556655543 3 57888886543 1
Q ss_pred ----ee-eEeec-CCCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCC---------eeeEEeecCCC
Q 008041 151 ----LL-GKFRA-STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSGHPG 200 (579)
Q Consensus 151 ----~~-~~~~~-~~~~v~~l~~~p~g~~l~~~~---------------~~i~vwd~~~~---------~~~~~~~~h~~ 200 (579)
.+ ..+.. .......++|.|||.++++.+ |.|.-++.... ..+. -.+|..
T Consensus 120 ~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn 198 (354)
T 3a9g_A 120 KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN 198 (354)
T ss_dssp EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC
T ss_pred CccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC
Confidence 11 11221 112346799999998777743 34555554321 0111 134443
Q ss_pred CEEEEEEec-CCCEEEEE
Q 008041 201 AVRFMTFSD-NGKYVLSS 217 (579)
Q Consensus 201 ~v~~l~~s~-~~~~l~s~ 217 (579)
...++|+| +++.+++-
T Consensus 199 -p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 199 -PQGIDWHRASGVMVATE 215 (354)
T ss_dssp -CCEEEECTTTCCEEEEE
T ss_pred -cceEEEeCCCCCEEEEe
Confidence 36799999 67655543
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.19 E-value=4.3 Score=43.77 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=105.8
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----cCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK 160 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~ 160 (579)
...|.+|+.+| +..||..+++... ........|.++.. .+| .+..++.+ -+..+|..+++.. .+. ....
T Consensus 73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~ 146 (758)
T 3ott_A 73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN 146 (758)
T ss_dssp TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence 45678888765 7899998876532 11112345777754 345 56666666 5888998765533 331 1234
Q ss_pred CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee--cC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008041 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~--~h----~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~ 234 (579)
.|.++...++|.+.+...+-+..|+..+++.. .+. .. ...|.++...+++..|..+. . +-+..++..+.+.
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeE
Confidence 68899888888877765566888888776542 221 11 12478888877776555554 2 4588888776542
Q ss_pred ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
. ....+ ....+..+... ++|... .|+. +-+.+++..+.
T Consensus 224 ~---~~~~l--~~~~i~~i~~d-----~~g~lW-igT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 K---QTEAF--HNNSIKSLALD-----GNGDLL-AGTD-NGLYVYHNDTT 261 (758)
T ss_dssp E---EEEEE--EEEEEEEEEEC-----TTCCEE-EEET-TEEEEECCTTS
T ss_pred E---eccCC--CCCeEEEEEEc-----CCCCEE-EEeC-CceeEEecCCC
Confidence 2 11111 12334445444 555544 4454 45778887654
No 334
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.91 E-value=2.8 Score=40.15 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=23.6
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~ 39 (579)
..++|.|||+++++--..|+|++++..++..
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 4569999999777655589999998766654
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.84 E-value=1.5 Score=46.86 Aligned_cols=147 Identities=8% Similarity=0.065 Sum_probs=80.1
Q ss_pred CcEEEEEECC----CeEEEEEccCCeEEEEe-c------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCC
Q 008041 86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~-~------~~h~~~V~~l~~~~~~~~l~s~~~d------~~v~iwd~~~ 148 (579)
+.+++.|+.+ .++.+||+.+++..... . ......-..+.+..+++.++.|+.+ ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5566666643 45999999988654222 1 1111112233332267677777643 3588899877
Q ss_pred Cceee--EeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-----ecCCCCEEEEEEecC-CCEEEE
Q 008041 149 GSLLG--KFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTFSDN-GKYVLS 216 (579)
Q Consensus 149 ~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~s~~-~~~l~s 216 (579)
.+-.. .+.... .-.+++...++++++.|+ +.+.+||..+.+-...- +........+.+..+ ++.++.
T Consensus 478 ~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 53221 122111 112333334788888887 27999999887543211 111122233555555 556666
Q ss_pred EecC-C-----CeEEEEEcCCCc
Q 008041 217 SAVG-E-----RYIALWRTDGVK 233 (579)
Q Consensus 217 ~~~~-d-----~~i~vwd~~~~~ 233 (579)
||.. + +.+.+||+.+..
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 6531 1 358899998876
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.62 E-value=1.5 Score=49.82 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=109.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccCccccccccccccccccccccccceEEeeecccccccccCCcEEEE
Q 008041 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (579)
Q Consensus 12 ~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (579)
-.+|..+.+|.=. ..++.|||+.+...+..+.- ..++..-.|.+. +.|+.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis~----------~~l~l 121 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISL----------NTVAL 121 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecCC----------CeeEE
Confidence 3577777777654 56788888887766544321 223445566653 33444
Q ss_pred EECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCCC
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
.+ +..|+.|++.......+.+.-| ...|..-..+++.++++..| -.|.+.+|..+.+ .-+.+.||-+
T Consensus 122 VT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~ 199 (1630)
T 1xi4_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (1630)
T ss_pred Ec-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence 43 4579999997544333333333 45677888889999866443 3478888887543 3344566655
Q ss_pred CeeEEEEc--c-CCCEEEEEC-----CeEEEEECCCC---ee------eEEe-ec--CCCCEEEEEEecCCCEEEEEecC
Q 008041 161 GISCMAVS--S-DGKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKYVLSSAVG 220 (579)
Q Consensus 161 ~v~~l~~~--p-~g~~l~~~~-----~~i~vwd~~~~---~~------~~~~-~~--h~~~v~~l~~s~~~~~l~s~~~~ 220 (579)
....+... + ..++++.+. +.++|-++... .. +..+ +. ...-..++..++.-..+...+ .
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it-k 278 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K 278 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe-c
Confidence 44333332 1 122333332 57888887542 11 1111 11 112233556666555555555 6
Q ss_pred CCeEEEEEcCCCccc
Q 008041 221 ERYIALWRTDGVKKQ 235 (579)
Q Consensus 221 d~~i~vwd~~~~~~~ 235 (579)
-|.|.+||+.++...
T Consensus 279 ~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCI 293 (1630)
T ss_pred CceEEEEecccchhh
Confidence 899999999998744
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.58 E-value=0.77 Score=40.53 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=78.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCce------eeEeecC--CCCeeEEEEccCCCEEEEECCeEEEEECCCCee------eEE
Q 008041 129 GSCIYSAGADGMVCEIDPLTGSL------LGKFRAS--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQK 194 (579)
Q Consensus 129 ~~~l~s~~~d~~v~iwd~~~~~~------~~~~~~~--~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~------~~~ 194 (579)
...|+....| +++.=...++.. ..++ +. -..+..++|+|+|.+.++.+|.++-.+..+.+. -..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccE
Confidence 3456666666 666655544431 1111 22 237789999999998888558887777655221 111
Q ss_pred eec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc--eeeeeeecCceeEEeEEecCCcccCCCcEEEEEE
Q 008041 195 FSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA--SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (579)
Q Consensus 195 ~~~-h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (579)
+-. --..-..+.|.|+|.+.++ + ||.|+-++..+...... .........-..+..+++. |+|...++.
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav-~--dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-----p~G~Lyav~- 152 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV-S--KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-----PNGYLYAVH- 152 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-----TTSCEEEEE-
T ss_pred ecccccccceEEEECCCCCEEEe-C--CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-----CCceEEEEe-
Confidence 110 0111478899999987665 3 69898887644332210 0011111122345778887 998877666
Q ss_pred cCCeEE
Q 008041 272 ETGVCY 277 (579)
Q Consensus 272 ~dg~i~ 277 (579)
||.++
T Consensus 153 -dg~ly 157 (236)
T 1tl2_A 153 -GQQFY 157 (236)
T ss_dssp -TTEEE
T ss_pred -CCcEE
Confidence 77754
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.20 E-value=3.7 Score=38.50 Aligned_cols=133 Identities=10% Similarity=0.134 Sum_probs=78.3
Q ss_pred CcEEEEEE----CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCCC
Q 008041 86 SSLLVLGT----GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK 160 (579)
Q Consensus 86 ~~~l~~~~----~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~ 160 (579)
+..|+... ....|+..++...... ++.. +.. ..|+++++.|+-.+. ...|+..++..+.....+. +
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~ 185 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C 185 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred CCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence 55566665 2344666666644332 3322 222 356778888876665 6788888987655443333 2
Q ss_pred CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCc
Q 008041 161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK 233 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~----~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-~d~~i~vwd~~~~~ 233 (579)
.. ...++|++..|+-.. ..|..-++..+. ...+.. ..+ ..|+|+++.|+.+.. ....|..-++....
T Consensus 186 ~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 186 NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 22 234669898888765 267777776544 333432 233 347888988877532 23567777776654
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.13 E-value=0.9 Score=43.82 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=44.4
Q ss_pred CcEEEEEECC-CeEEEEEccCCeEEEEecCCCC----CCEEEEEEccCCCEEEEEeC-C---------CcEEEEeCCCCc
Q 008041 86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA-D---------GMVCEIDPLTGS 150 (579)
Q Consensus 86 ~~~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~-d---------~~v~iwd~~~~~ 150 (579)
+.+++.|+.+ .++.+||+.+....+.....-. ..-.++.+ +++.++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4555555543 4599999975222222211111 11222222 5666666665 2 468899987764
Q ss_pred eee--EeecCCCCeeEEEEccCCCEEEEEC
Q 008041 151 LLG--KFRASTKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 151 ~~~--~~~~~~~~v~~l~~~p~g~~l~~~~ 178 (579)
-.. .+. ........+...++++++.|+
T Consensus 98 W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 98 WVKLMSHA-PMGMAGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp EEECSCCC-SSCCSSEEEEEETTEEEEEEC
T ss_pred EEECCCCC-CcccccceEEEECCEEEEEeC
Confidence 222 122 011111212225778888876
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.05 E-value=5.8 Score=40.23 Aligned_cols=250 Identities=10% Similarity=0.098 Sum_probs=134.2
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeccCcccccccccccccccccc----c----cccceEEeeecc-cc---cccccCCc
Q 008041 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL----S----VDYTCMKWLSVD-RK---KKRKLGSS 87 (579)
Q Consensus 20 lasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~w~~~~-~~---~~~~~~~~ 87 (579)
|.+|+..|.|+|+-+-+++.+..+.- |++....|-- + .....+.|.... ++ .....+++
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpV---------F~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr 143 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK 143 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECS---------SSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeec---------ccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE
Confidence 56788899999999999999887642 2211111100 0 000112222111 00 01112367
Q ss_pred EEEEEECC-CeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeC-------CCcEE---------E---Ee
Q 008041 88 LLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMVC---------E---ID 145 (579)
Q Consensus 88 ~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~-------d~~v~---------i---wd 145 (579)
++++-... ..|-..++..-++-..+.-.....+.+++|- |+..|++.++. ||... + .|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 77777744 4588888888776554544567889999996 78888887753 33211 1 12
Q ss_pred CCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C----------------eEEEEEC----------------------
Q 008041 146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNC---------------------- 186 (579)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-~----------------~i~vwd~---------------------- 186 (579)
..+.+....+.- .+....+...++|++.++.+ + .+.++++
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 111111111111 12223345566676666543 1 2455543
Q ss_pred ---CC----CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc-------ccceeeeeeecCceeEEe
Q 008041 187 ---SD----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 187 ---~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~ 252 (579)
+. +..+..+-.-......+.++|||+++++++.-+.++.++|++.-.. ....++........-..-
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 22 1111111111233467899999999999988889999999885321 111122111112222234
Q ss_pred EEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
..|+ ++|....+.--|..|.-|+++..
T Consensus 383 t~Fd-----~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFD-----GRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEC-----SSSEEEEEETTTTEEEEEEHHHH
T ss_pred EEEC-----CCCceEeeeeecceEEEEeccHH
Confidence 5565 78844444456999999998654
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.80 E-value=6 Score=39.54 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.9
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~ 39 (579)
..++|.|||+++++-...+.|++++..++..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 4569999999777654345788887655654
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.67 E-value=6.4 Score=41.90 Aligned_cols=147 Identities=8% Similarity=0.020 Sum_probs=79.1
Q ss_pred CcEEEEEECC------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeE--
Q 008041 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGK-- 154 (579)
Q Consensus 86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~-- 154 (579)
+.++++|+.+ .++.+||+.+++-...-. ...... .+++...++..++.|+.++ .+.+||..+..-...
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 5566776644 348999999876432110 101111 1223324778888887654 699999887642221
Q ss_pred ---eecCCCCeeEEEEccC-CCEEEEEC---------CeEEEEECCCCee-----eEEeec---CCCCEEEEEEecCCCE
Q 008041 155 ---FRASTKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKY 213 (579)
Q Consensus 155 ---~~~~~~~v~~l~~~p~-g~~l~~~~---------~~i~vwd~~~~~~-----~~~~~~---h~~~v~~l~~s~~~~~ 213 (579)
.........++.+..+ +++++.|+ +.+.+||+.+.+. ...+.. ....-.++....+++.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 1111122234555655 67777775 2588999988761 122211 1111123333444666
Q ss_pred EEEEecC-------CCeEEEEEcCCCc
Q 008041 214 VLSSAVG-------ERYIALWRTDGVK 233 (579)
Q Consensus 214 l~s~~~~-------d~~i~vwd~~~~~ 233 (579)
++.||.. ...+.+||+.+.+
T Consensus 611 yv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 611 LIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEECCccCCCCCCCCCeEEEEECCCCe
Confidence 6666631 2458888888764
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.58 E-value=5.4 Score=38.30 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=71.3
Q ss_pred CcEEEEEECCCeEEEEEccCCeEE---EE---ecCCCCCCEEEEEEccC---CCEEEEEeC--------CCcEEEEeCCC
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLK---WR---LSDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~---~~---~~~~h~~~V~~l~~~~~---~~~l~s~~~--------d~~v~iwd~~~ 148 (579)
+..++++...|.|++++.. +... .. ...........++|+|+ +..|+.+.. ...|..|++..
T Consensus 29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD 107 (353)
T ss_dssp TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence 4426677788999999853 3321 11 11112346789999996 555555432 23576676643
Q ss_pred C--c--eeeE-eec------CCCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCCe------------
Q 008041 149 G--S--LLGK-FRA------STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------ 190 (579)
Q Consensus 149 ~--~--~~~~-~~~------~~~~v~~l~~~p~g~~l~~~~---------------~~i~vwd~~~~~------------ 190 (579)
+ . .... +.. .......++|.|||.++++.+ |.|.-++....-
T Consensus 108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 187 (353)
T 2g8s_A 108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV 187 (353)
T ss_dssp TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence 3 1 1111 211 112246799999998777653 356666665320
Q ss_pred eeEEe-ecCCCCEEEEEEec-CCCEEEE
Q 008041 191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS 216 (579)
Q Consensus 191 ~~~~~-~~h~~~v~~l~~s~-~~~~l~s 216 (579)
....+ .+|. ....++|+| +|+.+++
T Consensus 188 ~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 188 RAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11112 2443 357899999 5655444
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.38 E-value=5.2 Score=37.47 Aligned_cols=157 Identities=10% Similarity=0.069 Sum_probs=88.9
Q ss_pred CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008041 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (579)
Q Consensus 96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g 171 (579)
+.|+..++..++.. .+.. .. +..|+++++.|+-.. .+..|+..++. |.....+..+.. .+++|+|
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEEC
Confidence 45788888776543 2212 22 236778888888765 34466667765 444444443332 4567888
Q ss_pred CEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeeeeeecCc
Q 008041 172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLAMEHPA 247 (579)
Q Consensus 172 ~~l~~~~---~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (579)
+.|.-.+ .+|++-++..+.....+. +... ..++|++.+|+-....+ ..|..-++...... .+....
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~------~Lt~~~ 226 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV------VLTEAN 226 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE------ECSCSC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE------EEeCCC
Confidence 8888665 688888887765443333 2222 34669999888765322 35666666655422 111111
Q ss_pred eeEEeEEecCCcccCCCcEEEEEEc--CCeEEEEEcC
Q 008041 248 VFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQ 282 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~ 282 (579)
+ .+++ |++.+|..++. .+.|..-+++
T Consensus 227 --~--~~~~-----~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 227 --I--EHYN-----VYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp --E--EEEE-----EETTEEEEEECSSSCEEEEEETT
T ss_pred --c--ceEE-----ECCCEEEEEECCCCcEEEEEECC
Confidence 1 2344 77777776533 2345444443
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.48 E-value=9.5 Score=38.11 Aligned_cols=101 Identities=10% Similarity=0.181 Sum_probs=61.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEeec------CCCCeeEEEEccC----CCEEEEEC-------
Q 008041 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFRA------STKGISCMAVSSD----GKMLATAA------- 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~------~~~~v~~l~~~p~----g~~l~~~~------- 178 (579)
...++++|.|+|+.+++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+.++-+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45789999999986665433347988886555432 22221 2356779999995 44444431
Q ss_pred -------CeEEEEECCCC-------eeeE-Eeec-CCCCEEEEEEecCCCEEEEEe
Q 008041 179 -------GQLKTFNCSDH-------KKMQ-KFSG-HPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 179 -------~~i~vwd~~~~-------~~~~-~~~~-h~~~v~~l~~s~~~~~l~s~~ 218 (579)
..|.-|+...+ +.+. .+.. .......|.|.|||.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 24555654321 1222 2221 123468899999998777765
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.15 E-value=1.1 Score=45.35 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCeeEEEEccCCCEEEEEC---CeEEEEECCCC------ee-------eEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008041 160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH------KK-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (579)
Q Consensus 160 ~~v~~l~~~p~g~~l~~~~---~~i~vwd~~~~------~~-------~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~ 223 (579)
.....+.++|||+++++++ .++.++|++.- +. +.... -.......+|.++| ..+++-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 3456789999999999998 69999998742 11 22222 22345678999999 56666668999
Q ss_pred EEEEEcCCC------ccccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEc
Q 008041 224 IALWRTDGV------KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (579)
Q Consensus 224 i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (579)
|--|++... +.. ...+..+.-+-..-.....-.....++|++|++.+.
T Consensus 401 vvkWni~~a~~~~~g~~~-~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKV-NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccC-CeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 999998653 111 113333333333333332223334488899888854
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.36 E-value=10 Score=36.19 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=64.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEe----ecCCCCeeEEEEccC----CCEEEEE---C-CeEE
Q 008041 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKF----RASTKGISCMAVSSD----GKMLATA---A-GQLK 182 (579)
Q Consensus 117 ~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~----~~~~~~v~~l~~~p~----g~~l~~~---~-~~i~ 182 (579)
-...++++|.|+|..+++--..|.|++++...++.. ..+ .........|+++|+ +.+.++- . +.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 356799999999987666544899999986655432 111 123457899999995 5444431 2 5676
Q ss_pred EEECCCC----------eee-EEee-cCCCCEEEEEEecCCCEEEEEe
Q 008041 183 TFNCSDH----------KKM-QKFS-GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 183 vwd~~~~----------~~~-~~~~-~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
-|....+ +.+ ..+. +....-..|.|.|||.++++.+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 6765541 222 2232 1122346799999998777755
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.99 E-value=23 Score=37.94 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=85.9
Q ss_pred CcEEEEEECCCeEEEEEccC------CeEE--EEe--cCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008041 86 SSLLVLGTGGGDVLALAVSA------GQLK--WRL--SDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~------~~~~--~~~--~~~-h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 154 (579)
...|.+|+..+-+.++|..+ +... ..+ ..+ ....|.++...++|...+.++..+-+..+|..+++....
T Consensus 429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 45578888887889998763 1121 111 111 123599999988888655334445588899877654432
Q ss_pred eec---CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee--cC-CCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008041 155 FRA---STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GH-PGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (579)
Q Consensus 155 ~~~---~~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~~~~~~~~~--~h-~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd 228 (579)
... ....+.++....+|.+.+...+-+..||..+++.. .+. +- ...|.++... +|...+ ++ .+| |..++
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~lWi-~t-~~G-l~~~~ 583 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSIWV-ST-TNG-LWIID 583 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEEEE-EE-SSC-EEEEE
T ss_pred cCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEEC-CCCEEE-EC-CCC-eEEEc
Confidence 211 12367888888888887766666888887665432 121 11 2457777664 665444 44 355 88889
Q ss_pred cCCCc
Q 008041 229 TDGVK 233 (579)
Q Consensus 229 ~~~~~ 233 (579)
..+.+
T Consensus 584 ~~~~~ 588 (758)
T 3ott_A 584 RKTMD 588 (758)
T ss_dssp TTTCC
T ss_pred CCCce
Confidence 87764
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.24 E-value=19 Score=35.94 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=61.9
Q ss_pred CCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC---ceeeEee---------cCCCCeeEEEEccC----CCEEEEEC--
Q 008041 118 GGVSAISFATHGS-CIYSAGADGMVCEIDPLTG---SLLGKFR---------ASTKGISCMAVSSD----GKMLATAA-- 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~-~l~s~~~d~~v~iwd~~~~---~~~~~~~---------~~~~~v~~l~~~p~----g~~l~~~~-- 178 (579)
...+.|+|.|+|. .++.+...|.|++++.... ..+..+. .....+..|+++|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3568999999996 4666678999999975322 1122111 11457889999996 55444422
Q ss_pred ------------CeEEEEECCC----------CeeeEEee--cCCCCEEEEEEecCCCEEEEEe
Q 008041 179 ------------GQLKTFNCSD----------HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 179 ------------~~i~vwd~~~----------~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~ 218 (579)
..|.-|.+.. .+.+..+. .....-..|.|.|||.+.++.|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 1444465532 23343433 2223467899999998777766
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=79.66 E-value=37 Score=31.11 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=69.4
Q ss_pred EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008041 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (579)
Q Consensus 89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (579)
+++ . +|.|+.|-....-.+..- ..-...|..++...+ +.+.-. ||.|+.|=....-.+..-......|..++..
T Consensus 76 ~~l-~-~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G 149 (282)
T 3qhy_B 76 LAL-K-DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG 149 (282)
T ss_dssp EEE-E-TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred EEE-E-CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc
Confidence 444 5 899999986642211000 111246777776443 444445 9999999754322111111122356666665
Q ss_pred cCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008041 169 SDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (579)
Q Consensus 169 p~g~~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~ 232 (579)
.+-..+++ .|.++.|-......+..-..-...|..++..... .++. .|+.|+.|-....
T Consensus 150 ~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al---~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 150 VYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL---KDGKVIAWGDNRY 208 (282)
T ss_dssp SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE---ETTEEEEEECCTT
T ss_pred cCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE---ECCeEEEEECCCC
Confidence 44334444 6888888655322111111112457776664432 2332 2899999986554
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=76.51 E-value=46 Score=30.47 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=86.7
Q ss_pred ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008041 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (579)
Q Consensus 93 ~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~ 172 (579)
+ +|.|+.|-....-.+..- ......|..++...+- .++. . ||.|+.|-....-.+..-..-...|..++...+-.
T Consensus 40 ~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs 114 (282)
T 3qhy_B 40 K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS 114 (282)
T ss_dssp E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE
T ss_pred E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE
Confidence 5 999999986543211100 1112356677654332 2333 4 89999997543221111111124677787776666
Q ss_pred EEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeeeeeecCceeEEe
Q 008041 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (579)
Q Consensus 173 ~l~~~~~~i~vwd~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (579)
.+++ .|.|+.|-....-.+-........|..++...+ +.+.-. |+.|+.|-........ ........+..+
T Consensus 115 ~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~--~G~v~~wG~n~~gqlg----~p~~~~~~v~~i 185 (282)
T 3qhy_B 115 YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK--NGGVIAWGDNYFGQTT----VPAEAQSGVDDV 185 (282)
T ss_dssp EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE--TTEEEEEECCTTSTTS----CCGGGGSSEEEE
T ss_pred EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE--CCEEEEecCCCCCCCC----CceecCCCeEEE
Confidence 7777 889999976542211111112345666665433 333322 6889999876533221 001111222222
Q ss_pred EEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
.+ ...+.++. .||.|+.|-....
T Consensus 186 ~~--------G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 186 AG--------GIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp EE--------CSSEEEEE-ETTEEEEEECCTT
T ss_pred Ee--------cCCEEEEE-ECCeEEEEECCCC
Confidence 22 22333334 6999999975544
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=73.45 E-value=67 Score=30.91 Aligned_cols=134 Identities=10% Similarity=0.157 Sum_probs=82.4
Q ss_pred CeEEEEEccCC--eEEEEecCC-----CCCCEEEEEEc---cC----CCEEEEEe-CCCcEEEEeCCCCceeeEee----
Q 008041 96 GDVLALAVSAG--QLKWRLSDC-----HPGGVSAISFA---TH----GSCIYSAG-ADGMVCEIDPLTGSLLGKFR---- 156 (579)
Q Consensus 96 g~i~iwd~~~~--~~~~~~~~~-----h~~~V~~l~~~---~~----~~~l~s~~-~d~~v~iwd~~~~~~~~~~~---- 156 (579)
-+|.+||+.++ +.+.++.-. ..+.+..+.+. |+ +.+++.+. ..+-|.++|+.+++..+...
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35889999999 877665311 23457888887 22 33444443 46789999999887655432
Q ss_pred cC--------------CCCeeEEEEccC----CCEEEEEC-CeEEEEECCC-----C---eeeEEeecCC---CCEEEEE
Q 008041 157 AS--------------TKGISCMAVSSD----GKMLATAA-GQLKTFNCSD-----H---KKMQKFSGHP---GAVRFMT 206 (579)
Q Consensus 157 ~~--------------~~~v~~l~~~p~----g~~l~~~~-~~i~vwd~~~-----~---~~~~~~~~h~---~~v~~l~ 206 (579)
.. ...+..|+++|+ ++.|.... ..-++|.+.+ . ..+..+ |.. ..-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 10 137888999998 77777665 4445554432 1 122222 222 2334556
Q ss_pred Ee-cCCCEEEEEecCCCeEEEEEcCC
Q 008041 207 FS-DNGKYVLSSAVGERYIALWRTDG 231 (579)
Q Consensus 207 ~s-~~~~~l~s~~~~d~~i~vwd~~~ 231 (579)
+. .+|..+++- ...+.|..|+..+
T Consensus 282 ~D~~~G~ly~~~-~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAE-ANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEE-SSSSEEEEEETTS
T ss_pred EeCCCCeEEEEe-ccCCeEEEEeCCC
Confidence 75 566555554 4788999999876
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.27 E-value=44 Score=36.93 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=33.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
.+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999999888743
No 354
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.83 E-value=66 Score=29.33 Aligned_cols=188 Identities=14% Similarity=0.139 Sum_probs=103.7
Q ss_pred CcEEEEEECCCeEEE---EEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc------eeeEe
Q 008041 86 SSLLVLGTGGGDVLA---LAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS------LLGKF 155 (579)
Q Consensus 86 ~~~l~~~~~~g~i~i---wd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~v~iwd~~~~~------~~~~~ 155 (579)
...++.-+..|.++- |++..+.... ++ .....|.++.... +..+++..+.+|.++...+.... ....+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 445788888888554 5554433211 22 2345677665421 46789999999999999865432 22223
Q ss_pred ecCCCCeeEEEEccCC-CEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008041 156 RASTKGISCMAVSSDG-KMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (579)
Q Consensus 156 ~~~~~~v~~l~~~p~g-~~l~~~~-~~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~~d~~i 224 (579)
+. .+.+..+...... .+++... |.++.+.... |.....+.. ...|..+...+++.+++..+ ..|.+
T Consensus 113 ke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T-~~G~~ 189 (276)
T 3no0_A 113 TE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVIT-AKGRV 189 (276)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEE-TTSCE
T ss_pred CC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEe-CCCcE
Confidence 32 2345554444333 4444455 8877776532 222222332 24566655555566777776 68999
Q ss_pred EEEEcCCCcccc--ceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEE--EEcCCc
Q 008041 225 ALWRTDGVKKQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI--WYGQNI 284 (579)
Q Consensus 225 ~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i--wd~~~~ 284 (579)
+...+..-.... ...+..+......+.+... .+...++..+.+|.+.. ++...-
T Consensus 190 kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~------~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 190 KKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI------KEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE------SSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe------CCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 888875432111 1112222333444443333 23456777888888887 876543
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=68.80 E-value=85 Score=30.19 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=54.0
Q ss_pred cEEEEeCCCC--ceeeEeecC------CCCeeEEEEc---cC----CCEEEEEC---CeEEEEECCCCeeeEEeecC---
Q 008041 140 MVCEIDPLTG--SLLGKFRAS------TKGISCMAVS---SD----GKMLATAA---GQLKTFNCSDHKKMQKFSGH--- 198 (579)
Q Consensus 140 ~v~iwd~~~~--~~~~~~~~~------~~~v~~l~~~---p~----g~~l~~~~---~~i~vwd~~~~~~~~~~~~h--- 198 (579)
.|.+||+.++ +.++++.-. ...+..+.+. |+ +.++..++ +-|.|+|+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999988 888776532 2367888887 32 34555554 68999999998765544210
Q ss_pred ---------------CCCEEEEEEecC----CCEEEEEec
Q 008041 199 ---------------PGAVRFMTFSDN----GKYVLSSAV 219 (579)
Q Consensus 199 ---------------~~~v~~l~~s~~----~~~l~s~~~ 219 (579)
...+..|+.+|+ ++.|+....
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence 135778888887 677777653
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.86 E-value=81 Score=29.59 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=103.4
Q ss_pred CcEEEEEECCCeEEEEE---ccC------CeEEEEecC-CCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCc--
Q 008041 86 SSLLVLGTGGGDVLALA---VSA------GQLKWRLSD-CHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGS-- 150 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd---~~~------~~~~~~~~~-~h~~~V~~l~~~~---~~~~l~s~~~d~~v~iwd~~~~~-- 150 (579)
...+++-+..|.++-.. ++. |..+..+.. .....|.++..-+ +..+++.++.+|.++...+....
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~ 132 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN 132 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc
Confidence 56688888888866544 332 222111211 1234566654433 57789999999999998865422
Q ss_pred -----eeeEeecCCCCeeEE-EEccCCCEEEEEC-CeEEEEECC--C---------CeeeEEeecCCCCEEEEEEecCCC
Q 008041 151 -----LLGKFRASTKGISCM-AVSSDGKMLATAA-GQLKTFNCS--D---------HKKMQKFSGHPGAVRFMTFSDNGK 212 (579)
Q Consensus 151 -----~~~~~~~~~~~v~~l-~~~p~g~~l~~~~-~~i~vwd~~--~---------~~~~~~~~~h~~~v~~l~~s~~~~ 212 (579)
....++.. +.+..+ ..+.+..+++... |.+..+... . |.....+. ....|.++...+++.
T Consensus 133 ~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~ 210 (327)
T 3uc1_A 133 RSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT 210 (327)
T ss_dssp CSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC
T ss_pred ccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC
Confidence 22234433 344444 3444445555555 877777665 2 11112232 234566666555566
Q ss_pred EEEEEecCCCeEEEEEcCCCccccc--eee--eeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 213 YVLSSAVGERYIALWRTDGVKKQSA--SCV--LAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 213 ~l~s~~~~d~~i~vwd~~~~~~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
+++..+ ..|.++.-.+..-..... ..+ ..+.. .+..+.+... .+...++..+.+|.+.-|+....
T Consensus 211 ~ll~~T-~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~------~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 211 YLLVAT-SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIV------DDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEEEE-TTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEE------CTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEEe-CCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEe------CCCccEEEEcCCCeEEEEehhhc
Confidence 777776 689998887654321100 111 12222 3334443333 34456777788888888876543
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.03 E-value=10 Score=42.03 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=32.3
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~ 44 (579)
++++..++..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 677888888999999999999999999999988754
No 358
>3s6n_2 SurviVal of motor neuron protein-interacting PROT; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_A
Probab=63.18 E-value=14 Score=33.73 Aligned_cols=60 Identities=15% Similarity=0.321 Sum_probs=43.8
Q ss_pred HHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCCCChhHHHHHHHH
Q 008041 495 RATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYK 557 (579)
Q Consensus 495 ~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~~~l~~l~~ 557 (579)
-..+.+|+...+..||++++. |-........+.+||.+||..-...| .++....|+.|-+
T Consensus 180 l~~l~~ld~~~v~~LL~~~~~-wl~~~~~~~~~~~WlyaLLa~Ld~pL--~~~~~s~LR~LaR 239 (280)
T 3s6n_2 180 LSIVSRMNQATVTSVLEYLSN-WFGERDFTPELGRWLYALLACLEKPL--LPEAHSLIRQLAR 239 (280)
T ss_dssp HHHHTTSCHHHHHHHHHHHHH-GGGTSCCCHHHHHHHHHHHHHCCSSC--CHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHH
Confidence 456789999999999999995 65544456788899999999666655 4444445555444
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.71 E-value=37 Score=38.39 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=30.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008041 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (579)
Q Consensus 120 V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 156 (579)
+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4455666778899999999999999999999988744
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=60.59 E-value=1.2e+02 Score=29.08 Aligned_cols=193 Identities=14% Similarity=0.187 Sum_probs=95.4
Q ss_pred CcEEEEEECCCeEEEEEccCC-----------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----
Q 008041 86 SSLLVLGTGGGDVLALAVSAG-----------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~-----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~----- 149 (579)
....++-+.+|.|+.|-.... .....+.......+..++.+....+.+.-..||.|+.|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 445667788999999975421 0111111112234566677666667777788999999953211
Q ss_pred -c-----eeeEeecC-CCCeeEEEEccCCCEEEEECCeEEEEECCC-Ce---------ee-EEeec-CCCCEEEEEEecC
Q 008041 150 -S-----LLGKFRAS-TKGISCMAVSSDGKMLATAAGQLKTFNCSD-HK---------KM-QKFSG-HPGAVRFMTFSDN 210 (579)
Q Consensus 150 -~-----~~~~~~~~-~~~v~~l~~~p~g~~l~~~~~~i~vwd~~~-~~---------~~-~~~~~-h~~~v~~l~~s~~ 210 (579)
. ....+... ...|..++....-..+++..|.|+.|-... ++ .. ..+.. ....|..++....
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g 221 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCS
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCC
Confidence 0 11112111 125666665433223333338888886432 11 01 11111 1235666665432
Q ss_pred CCEEEEEecCCCeEEEEEcCCCccc------cceeeeeeec-Cc-eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcC
Q 008041 211 GKYVLSSAVGERYIALWRTDGVKKQ------SASCVLAMEH-PA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (579)
Q Consensus 211 ~~~l~s~~~~d~~i~vwd~~~~~~~------~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (579)
..+.++-. .|+.|+.|-....... .......+.. .. .+..+.+ ...+.++.+.||.|+.|-..
T Consensus 222 ~~~t~~l~-~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--------G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 222 DAQTLCLT-DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--------GSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp SCEEEEEE-TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--------ETTEEEEEETTSCEEEEECC
T ss_pred CcEEEEEc-cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--------CCCEEEEEeCCCeEEEEeCC
Confidence 23444444 6899999975432111 0000011111 11 1222222 23556667889999999765
Q ss_pred Cceee
Q 008041 283 NIEEL 287 (579)
Q Consensus 283 ~~~~~ 287 (579)
..-++
T Consensus 293 ~~GqL 297 (389)
T 3kci_A 293 DYHRL 297 (389)
T ss_dssp GGGTT
T ss_pred CCCCC
Confidence 43333
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.49 E-value=9.1 Score=43.40 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=31.8
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008041 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 9 l~~~fspdg~~lasg~~dg~i~vwd~~~~~~~~~~~ 44 (579)
++++..++..++++-+.|+++|||++.+++++.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 555778888999999999999999999999988764
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.87 E-value=1.3e+02 Score=28.81 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=48.9
Q ss_pred CcEEEEEECCCeEEEEEccC-Ce-EEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCC----cEEEEeCCCCceeeEeec-
Q 008041 86 SSLLVLGTGGGDVLALAVSA-GQ-LKWRLSDCHPGGVSAISFAT-HGSCIYSAGADG----MVCEIDPLTGSLLGKFRA- 157 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~-~~-~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~- 157 (579)
...|.+|+..| +.+++... +. ............|.++++.| +...++.++..| .|...+ ..|+....+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 45688888877 55565433 22 21110011235699999998 334455555555 454443 23332222211
Q ss_pred -------------CCCCeeEEEEcc---CCCEEEEEC-CeEEEE
Q 008041 158 -------------STKGISCMAVSS---DGKMLATAA-GQLKTF 184 (579)
Q Consensus 158 -------------~~~~v~~l~~~p---~g~~l~~~~-~~i~vw 184 (579)
....|.++++.| .+.+++.+. +.|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 112477889987 344444333 555544
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.74 E-value=42 Score=34.29 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=44.2
Q ss_pred CeeEEEEccCCCEEEEEC--------------CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEec
Q 008041 161 GISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAV 219 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~--------------~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~ 219 (579)
....|.|+++|.+.++.+ +.++.++..+++....+.+. ...++.++|+||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 566899999999888543 16777787778765555443 356899999999998887653
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=56.60 E-value=49 Score=33.80 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=43.8
Q ss_pred CCEEEEEEccCCCEEEEEeC------------CCcEEEEeCCCCceeeEeecC-CCCeeEEEEccCCCEEEEEC
Q 008041 118 GGVSAISFATHGSCIYSAGA------------DGMVCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA 178 (579)
Q Consensus 118 ~~V~~l~~~~~~~~l~s~~~------------d~~v~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~g~~l~~~~ 178 (579)
.....|.|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987663321 125777787778776666543 34789999999999887664
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.63 E-value=36 Score=35.09 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=12.0
Q ss_pred CEEEEEEccCCCEEEEE
Q 008041 119 GVSAISFATHGSCIYSA 135 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~ 135 (579)
..-.|+|+|.|++++.-
T Consensus 477 ~PDNL~fd~~G~LwI~e 493 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILT 493 (592)
T ss_dssp CEEEEEECTTCCEEEEE
T ss_pred CCcceEECCCCCEEEEe
Confidence 35678899998855543
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.17 E-value=1.4e+02 Score=27.57 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=99.7
Q ss_pred CcEEEEEECCCeEEEEEcc---C------CeEEEEecC-CCCCCEEEEEEc---cCCCEEEEEeCCCcEEEEeCCCC---
Q 008041 86 SSLLVLGTGGGDVLALAVS---A------GQLKWRLSD-CHPGGVSAISFA---THGSCIYSAGADGMVCEIDPLTG--- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~---~------~~~~~~~~~-~h~~~V~~l~~~---~~~~~l~s~~~d~~v~iwd~~~~--- 149 (579)
...++..+..|.++-+... . |..+..+.. .....|.++..- .++.+++..+.+|.++...+...
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 132 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 132 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc
Confidence 5668889999997666653 2 221111111 233456666442 35667889999999999876422
Q ss_pred ----ceeeEeecCCCCeeEEEE-ccCCCEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008041 150 ----SLLGKFRASTKGISCMAV-SSDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 150 ----~~~~~~~~~~~~v~~l~~-~p~g~~l~~~~-~~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~s~~~~~l 214 (579)
.....+..+ +.+..+.. ..+..+++... |.+..++... |.....+. ....|.++...+++..+
T Consensus 133 ~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~l 210 (307)
T 1zi0_A 133 RTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAI 210 (307)
T ss_dssp CTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEE
T ss_pred ccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEE
Confidence 122223333 44444433 44445555555 7777776532 11122232 23456565544455566
Q ss_pred EEEecCCCeEEEEEcCCCccc----cceeeeeeec-CceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 215 LSSAVGERYIALWRTDGVKKQ----SASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
+..+ ..|.++-.++..-... .......+.. ....+...... +...++..+.+|.+.-++...
T Consensus 211 l~~T-~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~------~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTAT-QNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVD------DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEE-TTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEEC------TTCEEEEEESSCCEEEEEGGG
T ss_pred EEEE-cCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeC------CCceEEEEcCCCcEEEEeccc
Confidence 6666 6899888877432211 0011112222 23344433332 345566777788777666544
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.32 E-value=55 Score=33.67 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=42.9
Q ss_pred CeeEEEEccCCCEEEEECC--------------eEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEe
Q 008041 161 GISCMAVSSDGKMLATAAG--------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSA 218 (579)
Q Consensus 161 ~v~~l~~~p~g~~l~~~~~--------------~i~vwd~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~ 218 (579)
..-.|+|+|.|.++++-++ .+.+.+..+++..+-+.++ ...++.+.|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 3467899999998887651 3566677777766555554 36799999999999887754
No 368
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=47.49 E-value=2.2e+02 Score=28.15 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred CCeeEEEEccCCC--EEEEEC-CeEEEEECCCC---eeeEEee---------cCCCCEEEEEEecC----CCEEEEEec-
Q 008041 160 KGISCMAVSSDGK--MLATAA-GQLKTFNCSDH---KKMQKFS---------GHPGAVRFMTFSDN----GKYVLSSAV- 219 (579)
Q Consensus 160 ~~v~~l~~~p~g~--~l~~~~-~~i~vwd~~~~---~~~~~~~---------~h~~~v~~l~~s~~----~~~l~s~~~- 219 (579)
.....|+|.|+|. ++++-- |.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3568999999996 666665 99999975422 1222221 11356788999996 443333221
Q ss_pred CC----------CeEEEEEcCCCc-----cccceeeeeee--cCceeEEeEEecCCcccCCCcEEEEEEcCC
Q 008041 220 GE----------RYIALWRTDGVK-----KQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (579)
Q Consensus 220 ~d----------~~i~vwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (579)
.+ ..|.-|.+.... ....+.++... ........+.|. |||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-----pDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-----PDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-----TTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-----CCCcEEEEeCCCC
Confidence 11 145556665321 11122333332 112234556676 8887666665433
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.90 E-value=23 Score=37.27 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=27.2
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 008041 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFA 44 (579)
Q Consensus 14 spdg~~lasg~~dg~i~vwd~~~~~~~~~~~ 44 (579)
..+..++++-+.|.++|+||+.+++++.+..
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4457899999999999999999999988764
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.62 E-value=2e+02 Score=26.85 Aligned_cols=142 Identities=15% Similarity=0.140 Sum_probs=79.2
Q ss_pred CcEEEEEECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--C----C---
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--T----G--- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~--~----~--- 149 (579)
...+++.+..|.|+.-.+..-. ....+ .. .+.+..+........++..+..|.+..+... . +
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~l-ke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNL-RD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBC-CT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEE-CC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 5789999999999998876422 11122 22 3456655555556678888899998888765 2 1
Q ss_pred --ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-------eeeE--EeecCCCCEEEEEEecCCCEEEE
Q 008041 150 --SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQ--KFSGHPGAVRFMTFSDNGKYVLS 216 (579)
Q Consensus 150 --~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--~~i~vwd~~~~-------~~~~--~~~~h~~~v~~l~~s~~~~~l~s 216 (579)
.....+. ....|.++...+++..++..+ |.++.-.+..- +-+. .+..-.+.+..+....+...++.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 1111222 234566666655555555544 77777665321 1122 22221334544444434444555
Q ss_pred EecCCCeEEEEEcCC
Q 008041 217 SAVGERYIALWRTDG 231 (579)
Q Consensus 217 ~~~~d~~i~vwd~~~ 231 (579)
.+ .+|.+.-++...
T Consensus 266 ~T-~~G~~ir~~~~~ 279 (327)
T 3uc1_A 266 VT-SGGGVIRTAARQ 279 (327)
T ss_dssp EE-GGGCEEEEEGGG
T ss_pred Ec-CCCeEEEEehhh
Confidence 55 467777776543
No 371
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=43.75 E-value=3.1e+02 Score=28.86 Aligned_cols=188 Identities=9% Similarity=-0.046 Sum_probs=95.1
Q ss_pred cEEEEEECCCe----EEEEEccCCeEEEEecC-CCCC------CEEEEEEccCCCEEEEEe-----------CCCcEEEE
Q 008041 87 SLLVLGTGGGD----VLALAVSAGQLKWRLSD-CHPG------GVSAISFATHGSCIYSAG-----------ADGMVCEI 144 (579)
Q Consensus 87 ~~l~~~~~~g~----i~iwd~~~~~~~~~~~~-~h~~------~V~~l~~~~~~~~l~s~~-----------~d~~v~iw 144 (579)
..++.-+.+|. ++++|+.+++.+..-+. .-.. ....++|..+ ..++.+. ....|+.|
T Consensus 143 ~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 221 (711)
T 4hvt_A 143 RYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYPNSLYIW 221 (711)
T ss_dssp EEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSBCEEEEE
T ss_pred EEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCCCEEEEE
Confidence 34444444554 99999999987632211 0000 0133477643 4444432 22468888
Q ss_pred eCCCCc--eeeEeecCCCCe-eEEEEccCCCE-----EEEEC-----CeEEEEECCC--CeeeEEeecCCCCEEEEEEec
Q 008041 145 DPLTGS--LLGKFRASTKGI-SCMAVSSDGKM-----LATAA-----GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSD 209 (579)
Q Consensus 145 d~~~~~--~~~~~~~~~~~v-~~l~~~p~g~~-----l~~~~-----~~i~vwd~~~--~~~~~~~~~h~~~v~~l~~s~ 209 (579)
.+.+.. -...|.+....+ .+...++++++ +++.+ ..+++.+... ++ +..+..... ..+..+.
T Consensus 222 ~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~~~~~ 298 (711)
T 4hvt_A 222 KRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--ATLQGSF 298 (711)
T ss_dssp ETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--CEEEEEE
T ss_pred ECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--ceEeeeE
Confidence 876542 233455443332 34556677762 44332 4667777653 43 223321121 1223445
Q ss_pred CCCEEEEEe---------cCCCeEEEEEcCCCcc-----ccceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCC-
Q 008041 210 NGKYVLSSA---------VGERYIALWRTDGVKK-----QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG- 274 (579)
Q Consensus 210 ~~~~l~s~~---------~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg- 274 (579)
++.+++... ...+.|...++..... .....++ .......+..+.+. .+..+++...+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~------~~~l~~~~~~~~~ 371 (711)
T 4hvt_A 299 KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT------KDRVFLATYDNVV 371 (711)
T ss_dssp TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC------SSCEEEEEEETTE
T ss_pred CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE------CCEEEEEEEECCE
Confidence 665555321 1356788888876421 1111112 23345556666664 346777777777
Q ss_pred -eEEEEEcCCce
Q 008041 275 -VCYIWYGQNIE 285 (579)
Q Consensus 275 -~i~iwd~~~~~ 285 (579)
.+++++..+++
T Consensus 372 ~~l~~~~~~~g~ 383 (711)
T 4hvt_A 372 AKVVTFTLENEQ 383 (711)
T ss_dssp EEEEEECEETTE
T ss_pred EEEEEEECCCCc
Confidence 46777766553
No 372
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.47 E-value=42 Score=35.30 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=29.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008041 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (579)
Q Consensus 119 ~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 157 (579)
.|.++.+ +..++++-+.|+++|+||+.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555555 467999999999999999999998877554
No 373
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.95 E-value=2.4e+02 Score=26.20 Aligned_cols=189 Identities=10% Similarity=0.017 Sum_probs=97.0
Q ss_pred CcEEEEEECCCeEEEEEccC---------CeEEEEecC-CCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC---
Q 008041 86 SSLLVLGTGGGDVLALAVSA---------GQLKWRLSD-CHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG--- 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~---------~~~~~~~~~-~h~~~V~~l~~~~---~~~~l~s~~~d~~v~iwd~~~~--- 149 (579)
...++..+..|.++-+.... |..+..... .....|.++..-+ ++.+++.++.+|.++...+...
T Consensus 50 ~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~ 129 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQ 129 (323)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCS
T ss_pred CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhc
Confidence 56688889999876666532 221111111 1234466553333 2567889999999999887422
Q ss_pred -----ceeeEeecCCCCeeEEEEc-cCCCEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCC-
Q 008041 150 -----SLLGKFRASTKGISCMAVS-SDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGK- 212 (579)
Q Consensus 150 -----~~~~~~~~~~~~v~~l~~~-p~g~~l~~~~-~~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~s~~~~- 212 (579)
.....+... +.+..+... ++..+++... |.+..+.... |.....+. ....|.++...+++.
T Consensus 130 ~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~ 207 (323)
T 1wp5_A 130 RYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDE 207 (323)
T ss_dssp CCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTC
T ss_pred cccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCc
Confidence 222233332 444444443 3444555555 8777776542 11122222 234466664444444
Q ss_pred EEEEEecCCCeEEEEEcCCCcccc--ceeeee---eecCc-eeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCC
Q 008041 213 YVLSSAVGERYIALWRTDGVKKQS--ASCVLA---MEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (579)
Q Consensus 213 ~l~s~~~~d~~i~vwd~~~~~~~~--~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (579)
.++..+ ..|..+..++..-.... ...+.. +.... ..+.+... .++..++..+.+|.+.-+++..
T Consensus 208 ~ll~vt-~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v------~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 208 SIVVAT-QRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVA------QDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEEE-TTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEE------CTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEEE-CCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEe------CCCCeEEEEeCCCeEEEEEhhh
Confidence 566666 68888887765421110 111111 11212 33333333 2345566777778776666543
No 374
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=38.00 E-value=17 Score=27.50 Aligned_cols=35 Identities=6% Similarity=0.053 Sum_probs=28.5
Q ss_pred Chh-hHHHHhhccChhhHHHHHHHHHHHHhcCCCCc
Q 008041 490 PVK-KMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524 (579)
Q Consensus 490 ~~~-~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~ 524 (579)
-++ .|..|+..||+..+..+|+.+-.-...+|.+.
T Consensus 37 ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~nP~~a 72 (109)
T 2l9b_A 37 TPAMMISSELAKKPKEVQLKFLQKFQEWTRAHPEDA 72 (109)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 367 99999999999999999999886555666543
No 375
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=37.85 E-value=42 Score=27.24 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=40.6
Q ss_pred eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcC-CCCcchhHHHHHHHHH
Q 008041 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSR-SYKGKNILQWIYFILV 536 (579)
Q Consensus 484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~-~~~~~~~~~wl~~ll~ 536 (579)
+++..+...+|.+.|.+|...+...|++||-.-+..- ...+..++.|=.-++.
T Consensus 82 ~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e 135 (152)
T 3dwl_G 82 DVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVE 135 (152)
T ss_dssp HHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHH
Confidence 5677788899999999999999999999999666533 1346677778665554
No 376
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=36.07 E-value=4.1e+02 Score=27.97 Aligned_cols=193 Identities=11% Similarity=0.129 Sum_probs=95.9
Q ss_pred EEccCCCEEEEEe----CC-CcEEEEECCCCeEEEEeccCccccccccccccccccc-cccccceEEeeecccccccccC
Q 008041 12 SFSPALDYFAICS----GD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH-LSVDYTCMKWLSVDRKKKRKLG 85 (579)
Q Consensus 12 ~fspdg~~lasg~----~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~ 85 (579)
+++||+++++.+- .| ..++++|+.+++.+.. + |.+....|. +....+.+.|...
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~--~---------~~~~~k~~~~~~~~~~~~~W~d~--------- 195 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN--G---------FEPITNSGKLLEGKFTYPTWINK--------- 195 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT--C---------SCCBCTTCCBCCEETCCEEEEET---------
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC--C---------cccccccccccccccceeeEECC---------
Confidence 4899999887542 22 4689999999987621 0 000000000 0112345577632
Q ss_pred CcEEEEEE--------CC---CeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCE-----EEEEeCC---CcEE
Q 008041 86 SSLLVLGT--------GG---GDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSC-----IYSAGAD---GMVC 142 (579)
Q Consensus 86 ~~~l~~~~--------~~---g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~-----l~s~~~d---~~v~ 142 (579)
..++.++ .. ..|+.|.+-+.. .+..- ....--.+...++++++ +++.+.+ ..++
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 272 (711)
T 4hvt_A 196 -DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEV--PKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNY 272 (711)
T ss_dssp -TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEEC--CTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEE
T ss_pred -CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEecc--CCCceEEEEEEecCCCceEEEEEEEEecccCceeEE
Confidence 2233332 11 348888876542 33222 12222334555667663 4444422 3456
Q ss_pred EEeCCC--CceeeEeecCCCCeeEEEEccCCCEEEEE-----------C-CeEEEEECCCCe-------eeEE-ee-cCC
Q 008041 143 EIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATA-----------A-GQLKTFNCSDHK-------KMQK-FS-GHP 199 (579)
Q Consensus 143 iwd~~~--~~~~~~~~~~~~~v~~l~~~p~g~~l~~~-----------~-~~i~vwd~~~~~-------~~~~-~~-~h~ 199 (579)
+.|... ++.+ .+..... ..+..++++.+++.. . +.|...|+.++. .... +. ...
T Consensus 273 ~~~~~~~~~~~~-~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (711)
T 4hvt_A 273 ILDTKYKNLKLQ-KINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN 349 (711)
T ss_dssp EEECSSSSCEEE-ECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT
T ss_pred EEcCCCCCCcce-EeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC
Confidence 666543 3322 2222222 123345566665532 2 678888887642 2233 32 223
Q ss_pred CCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCC
Q 008041 200 GAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGV 232 (579)
Q Consensus 200 ~~v~~l~~s~~~~~l~s~~~~d~~--i~vwd~~~~ 232 (579)
..+..+.+..+ ..+++.. .++. +.++++.++
T Consensus 350 ~~l~~~~~~~~-~l~~~~~-~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATY-DNVVAKVVTFTLENE 382 (711)
T ss_dssp EEEEEEEECSS-CEEEEEE-ETTEEEEEEECEETT
T ss_pred CeEEEEEEECC-EEEEEEE-ECCEEEEEEEECCCC
Confidence 45677888765 3444443 5654 667776554
No 377
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=35.73 E-value=49 Score=26.84 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=39.4
Q ss_pred eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHH
Q 008041 484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYK-GKNILQWIYFILV 536 (579)
Q Consensus 484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~-~~~~~~wl~~ll~ 536 (579)
+++..+...+|+..|..|...+...|++||-.-+..-... +..++.|-.-++.
T Consensus 81 ~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~~ 134 (151)
T 1k8k_G 81 KVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALA 134 (151)
T ss_dssp HHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcCCCcchHHHHHHHHHHH
Confidence 5677778889999999999999999999999666543322 3456666554443
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=33.10 E-value=2.9e+02 Score=25.43 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=103.6
Q ss_pred CcEEEEEECCCeEEEEEccCCeE-------EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---C------C
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQL-------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---T------G 149 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~---~------~ 149 (579)
...+++.+.+|.|+--.+..-+. +..+.-.-.+.+..+........++..+..|.++-+... . |
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 56688999999999887654321 111111122445555555556677777889987776542 1 1
Q ss_pred cee---eEeecCCCCeeEEEEcc---CCC-EEEEEC-CeEEEEECCC-------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008041 150 SLL---GKFRASTKGISCMAVSS---DGK-MLATAA-GQLKTFNCSD-------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 150 ~~~---~~~~~~~~~v~~l~~~p---~g~-~l~~~~-~~i~vwd~~~-------~~~~~~~~~h~~~v~~l~~s~~~~~l 214 (579)
..+ -.+.. ...|.++...+ ++. +++... |.++...+.. |.....+.. ...+..+....++..+
T Consensus 88 ~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 111 11222 23444443332 234 444444 8887776632 223333443 4455555555445556
Q ss_pred EEEecCCCeEEEEEcCCCccc----cceeeeeeecCceeEEeEEecCCcccCCCcEEEEEEcCCeEEEEEcCCc
Q 008041 215 LSSAVGERYIALWRTDGVKKQ----SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (579)
+..+ .+|.+..+....-... .......+...+..+.+... +++..+++.+..|..+.+++...
T Consensus 166 ~l~T-~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v------~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 166 ICLS-KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSV------KENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEE-TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEEC------TTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEe-CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEE------CCCCeEEEEECCCceEEEEHHHh
Confidence 6666 6898888887542111 11122334344455554444 34567888899999988876543
No 379
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=28.79 E-value=3.5e+02 Score=24.92 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=80.9
Q ss_pred CcEEEEEECCCeEEEEEccC---C------eEEEEec-CCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCC----
Q 008041 86 SSLLVLGTGGGDVLALAVSA---G------QLKWRLS-DCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLT---- 148 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~---~------~~~~~~~-~~h~~~V~~l~~~~---~~~~l~s~~~d~~v~iwd~~~---- 148 (579)
...+++.+..|.++-+.... . ..+.... -.....|.++...+ ++.+++..+.+|.++...+..
T Consensus 58 ~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~ 137 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 137 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-
T ss_pred CCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc
Confidence 55688889999977776542 1 1100010 11223455554333 466788889999999988743
Q ss_pred ---CceeeEeecCCCCeeEEEEc-cCCCEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEE
Q 008041 149 ---GSLLGKFRASTKGISCMAVS-SDGKMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYV 214 (579)
Q Consensus 149 ---~~~~~~~~~~~~~v~~l~~~-p~g~~l~~~~-~~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~s~~~~~l 214 (579)
|.....+.. .+.+..+... ++..+++... |.+..+.... |.....+.. ...|.++...+++..+
T Consensus 138 r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l 215 (312)
T 1suu_A 138 KSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYL 215 (312)
T ss_dssp ---CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEE
T ss_pred CCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeE
Confidence 222223443 3455554443 4444555555 8887777643 222223332 3455565555555666
Q ss_pred EEEecCCCeEEEEEcCC
Q 008041 215 LSSAVGERYIALWRTDG 231 (579)
Q Consensus 215 ~s~~~~d~~i~vwd~~~ 231 (579)
++.+ ..|..+...+..
T Consensus 216 ~~vt-~~G~~kr~~~~e 231 (312)
T 1suu_A 216 LIVS-ENGYGKRLNMSK 231 (312)
T ss_dssp EEEE-TTSEEEEEEGGG
T ss_pred EEEE-CCCceEEEEHHH
Confidence 6666 689988888754
No 380
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=24.44 E-value=2.2e+02 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=19.3
Q ss_pred EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE
Q 008041 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS 134 (579)
Q Consensus 92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 134 (579)
-..||.+.++|.. +..++............+...++|+.++.
T Consensus 57 l~~dGnLvL~d~~-~~~vWss~t~~~~~~~~l~L~ddGNlVly 98 (105)
T 4h3o_A 57 LQSDGNFVVYDSS-GRSLWASHSTRGSGNYILILQDDGNVIIY 98 (105)
T ss_dssp ECTTSCEEEECTT-CCEEEECCCCCCSSCEEEEECTTSCEEEE
T ss_pred EeCCccEEEECCC-cEEEEEecCCCCCCCEEEEEeCCCeEEEE
Confidence 3456666666643 33343332111222234455566665544
No 381
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=22.33 E-value=1.9e+02 Score=28.91 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=37.8
Q ss_pred CcEEEEEECCCeEEEEEcc-CCe-------EEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008041 86 SSLLVLGTGGGDVLALAVS-AGQ-------LKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~-~~~-------~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~v~i 143 (579)
...+++|+.+|.|+=.-.. .+. .+..+. .....+|..+.+++++.+|+.++.++.+++
T Consensus 421 ~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 421 YDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 5678999999985433322 211 111221 124578999999999999999988775554
No 382
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.19 E-value=2.6e+02 Score=21.10 Aligned_cols=82 Identities=9% Similarity=0.073 Sum_probs=45.0
Q ss_pred CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008041 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (579)
Q Consensus 86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (579)
+.+.+.-..||.+.+|+...+..++.........-..+.+..+|++++.- .++.+ +|.-.+.. . .....+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t~~-------~-~~~~~~ 93 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITD-DRLNT-VFVSNTVG-------Q-EGDYVL 93 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEEC-TTSCE-EEECSCCC-------S-SSCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEEC-CCCCE-EEECCCcC-------C-CCCEEE
Confidence 44556667888888887654566655432222222456777778766553 34443 67644321 1 112445
Q ss_pred EEccCCCEEEEE
Q 008041 166 AVSSDGKMLATA 177 (579)
Q Consensus 166 ~~~p~g~~l~~~ 177 (579)
.+.+||++++-.
T Consensus 94 ~L~~dGnlvly~ 105 (113)
T 3mez_B 94 ILQINGQAVVYG 105 (113)
T ss_dssp EECTTSCEEEEC
T ss_pred EEcCCceEEEec
Confidence 666777665543
No 383
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=22.15 E-value=2.7e+02 Score=21.29 Aligned_cols=43 Identities=7% Similarity=0.155 Sum_probs=22.1
Q ss_pred EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE
Q 008041 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY 133 (579)
Q Consensus 90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 133 (579)
+.-..+|.+.++|. .+..++............+.+.++|..++
T Consensus 65 l~l~~dGNLVl~d~-~~~~lW~S~~~~~~g~~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 65 AVLQPDGVLVVITN-ENVTVWQSPVAGKAGHYVLVLQPDRNVVI 107 (119)
T ss_dssp EEECTTSCEEEECT-TCCEEEECSCCCCSSCEEEEECTTSCEEE
T ss_pred EEEccCCEEEEEeC-CCcEEEcCCCCCCCCCEEEEEECCCcEEE
Confidence 44456677777763 34455554322222344556666666443
Done!