Query 008042
Match_columns 579
No_of_seqs 347 out of 1733
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 18:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 5.2E-15 1.1E-19 138.6 11.6 82 345-427 31-116 (144)
2 KOG0144 RNA-binding protein CU 99.6 1.8E-15 3.8E-20 159.9 4.9 151 272-432 54-213 (510)
3 KOG0153 Predicted RNA-binding 99.6 1.1E-14 2.4E-19 150.7 10.7 76 346-424 226-302 (377)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1E-13 2.2E-18 144.5 10.9 79 348-427 269-351 (352)
5 KOG0149 Predicted RNA-binding 99.5 3.6E-14 7.9E-19 140.8 7.0 76 347-424 11-90 (247)
6 KOG0148 Apoptosis-promoting RN 99.4 1.6E-13 3.4E-18 138.5 8.1 142 272-429 82-242 (321)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 4.2E-13 9E-18 139.9 10.8 80 347-427 2-85 (352)
8 KOG0125 Ataxin 2-binding prote 99.4 2.8E-13 6E-18 139.6 8.9 80 345-425 93-174 (376)
9 PF00076 RRM_1: RNA recognitio 99.4 4.2E-13 9.1E-18 107.0 8.1 67 351-418 1-70 (70)
10 TIGR01659 sex-lethal sex-letha 99.4 3.9E-13 8.4E-18 142.5 9.3 81 347-428 192-278 (346)
11 TIGR01645 half-pint poly-U bin 99.4 4.2E-13 9.2E-18 150.6 9.7 79 347-426 203-285 (612)
12 TIGR01628 PABP-1234 polyadenyl 99.4 4.4E-13 9.5E-18 149.3 8.9 84 346-430 283-369 (562)
13 TIGR01659 sex-lethal sex-letha 99.4 1.2E-12 2.7E-17 138.7 10.4 81 345-426 104-188 (346)
14 PLN03120 nucleic acid binding 99.4 1.6E-12 3.5E-17 132.1 10.5 76 348-425 4-80 (260)
15 TIGR01628 PABP-1234 polyadenyl 99.3 2.5E-12 5.3E-17 143.3 10.5 83 345-428 175-264 (562)
16 KOG0113 U1 small nuclear ribon 99.3 8E-12 1.7E-16 127.7 10.4 87 337-424 90-180 (335)
17 KOG0111 Cyclophilin-type pepti 99.3 1.7E-12 3.6E-17 128.0 4.3 80 346-426 8-91 (298)
18 PLN03213 repressor of silencin 99.3 8.3E-12 1.8E-16 134.0 9.5 79 346-425 8-88 (759)
19 PF14259 RRM_6: RNA recognitio 99.3 2.2E-11 4.8E-16 98.4 8.2 67 351-418 1-70 (70)
20 TIGR01645 half-pint poly-U bin 99.2 1.9E-11 4.1E-16 137.4 10.4 78 346-424 105-186 (612)
21 smart00362 RRM_2 RNA recogniti 99.2 5E-11 1.1E-15 93.1 9.7 70 350-420 1-72 (72)
22 PLN03121 nucleic acid binding 99.2 3.9E-11 8.4E-16 120.7 10.6 77 346-424 3-80 (243)
23 KOG0148 Apoptosis-promoting RN 99.2 2E-11 4.2E-16 123.5 8.0 80 348-428 62-145 (321)
24 KOG4205 RNA-binding protein mu 99.2 1.4E-11 3.1E-16 128.6 6.1 153 272-431 26-182 (311)
25 KOG0107 Alternative splicing f 99.2 5.2E-11 1.1E-15 114.1 8.1 78 347-426 9-86 (195)
26 COG0724 RNA-binding proteins ( 99.2 9.9E-11 2.1E-15 112.3 10.1 76 348-424 115-194 (306)
27 TIGR01622 SF-CC1 splicing fact 99.2 9.9E-11 2.1E-15 126.7 11.0 78 346-424 184-265 (457)
28 smart00360 RRM RNA recognition 99.2 1.4E-10 3E-15 90.1 8.5 67 353-420 1-71 (71)
29 KOG0122 Translation initiation 99.2 8.2E-11 1.8E-15 117.7 8.8 78 347-425 188-269 (270)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.6E-10 3.5E-15 126.6 11.9 79 346-425 293-375 (509)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.5E-10 3.3E-15 127.4 11.1 80 345-426 272-352 (481)
32 TIGR01648 hnRNP-R-Q heterogene 99.1 1.7E-10 3.6E-15 129.4 11.2 77 346-427 231-309 (578)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.9E-10 4.1E-15 126.7 10.8 76 347-425 1-78 (481)
34 KOG4207 Predicted splicing fac 99.1 7E-11 1.5E-15 115.8 6.4 78 346-424 11-92 (256)
35 KOG0131 Splicing factor 3b, su 99.1 5.7E-11 1.2E-15 114.5 5.5 76 347-423 8-87 (203)
36 TIGR01622 SF-CC1 splicing fact 99.1 3.2E-10 6.8E-15 122.8 11.6 78 346-425 87-168 (457)
37 TIGR01648 hnRNP-R-Q heterogene 99.1 1.9E-10 4E-15 129.1 10.1 77 347-424 57-137 (578)
38 cd00590 RRM RRM (RNA recogniti 99.1 6.6E-10 1.4E-14 87.2 9.7 71 350-421 1-74 (74)
39 PF13893 RRM_5: RNA recognitio 99.1 4.3E-10 9.2E-15 88.0 8.1 56 366-422 1-56 (56)
40 KOG0117 Heterogeneous nuclear 99.0 5E-10 1.1E-14 119.6 7.5 80 344-428 255-334 (506)
41 KOG0126 Predicted RNA-binding 99.0 9.9E-11 2.1E-15 112.9 -0.3 79 343-422 30-112 (219)
42 KOG0108 mRNA cleavage and poly 99.0 1.8E-09 3.9E-14 117.4 9.2 81 345-426 14-99 (435)
43 KOG4205 RNA-binding protein mu 98.9 4.9E-10 1.1E-14 117.2 4.4 81 347-429 5-89 (311)
44 smart00361 RRM_1 RNA recogniti 98.9 2.7E-09 5.8E-14 87.7 7.8 57 363-419 2-69 (70)
45 KOG0114 Predicted RNA-binding 98.9 3.8E-09 8.2E-14 94.0 8.6 79 346-425 16-95 (124)
46 KOG0147 Transcriptional coacti 98.9 1.1E-09 2.3E-14 119.6 6.1 154 270-429 197-362 (549)
47 KOG0124 Polypyrimidine tract-b 98.9 7.1E-10 1.5E-14 115.9 4.2 175 348-525 113-307 (544)
48 KOG0127 Nucleolar protein fibr 98.9 3E-09 6.6E-14 115.9 8.6 82 348-430 117-201 (678)
49 KOG0121 Nuclear cap-binding pr 98.9 2.9E-09 6.2E-14 97.9 6.7 76 346-422 34-113 (153)
50 KOG0117 Heterogeneous nuclear 98.9 6.4E-09 1.4E-13 111.3 9.8 77 346-423 81-162 (506)
51 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.5E-08 3.3E-13 111.2 9.9 75 345-423 172-258 (509)
52 KOG0145 RNA-binding protein EL 98.8 1.7E-08 3.7E-13 102.0 8.5 82 346-428 39-124 (360)
53 KOG0109 RNA-binding protein LA 98.8 7.8E-09 1.7E-13 105.8 6.0 76 345-425 75-150 (346)
54 KOG0127 Nucleolar protein fibr 98.8 5.6E-08 1.2E-12 106.3 12.7 79 349-428 293-381 (678)
55 KOG0105 Alternative splicing f 98.7 1.6E-08 3.5E-13 98.0 6.9 79 346-425 4-83 (241)
56 KOG0130 RNA-binding protein RB 98.7 1.2E-08 2.5E-13 94.7 5.6 77 350-427 74-154 (170)
57 KOG0132 RNA polymerase II C-te 98.7 1.8E-08 3.9E-13 113.5 7.5 80 347-429 420-499 (894)
58 KOG0145 RNA-binding protein EL 98.7 4E-08 8.8E-13 99.4 8.8 75 350-425 280-358 (360)
59 KOG0109 RNA-binding protein LA 98.7 2.1E-08 4.5E-13 102.8 6.2 77 349-430 3-79 (346)
60 KOG0123 Polyadenylate-binding 98.7 3.5E-08 7.5E-13 105.9 7.8 77 351-429 79-157 (369)
61 KOG0144 RNA-binding protein CU 98.7 4.1E-08 8.9E-13 104.9 8.1 82 346-428 32-120 (510)
62 KOG0131 Splicing factor 3b, su 98.6 3.2E-08 6.9E-13 95.8 5.2 83 346-429 94-181 (203)
63 KOG4206 Spliceosomal protein s 98.6 1.1E-07 2.4E-12 94.6 8.0 85 347-432 8-97 (221)
64 KOG0123 Polyadenylate-binding 98.6 7E-08 1.5E-12 103.6 6.3 148 272-429 96-250 (369)
65 KOG0146 RNA-binding protein ET 98.5 6.8E-08 1.5E-12 98.1 4.8 84 343-427 280-367 (371)
66 KOG0415 Predicted peptidyl pro 98.5 1.3E-07 2.8E-12 99.0 6.6 81 343-424 234-318 (479)
67 KOG0146 RNA-binding protein ET 98.5 2E-07 4.3E-12 94.7 6.8 88 344-432 15-108 (371)
68 KOG4212 RNA-binding protein hn 98.4 5.2E-07 1.1E-11 96.6 8.3 76 346-422 42-121 (608)
69 KOG4208 Nucleolar RNA-binding 98.4 5.5E-07 1.2E-11 88.7 7.0 79 346-425 47-130 (214)
70 KOG0124 Polypyrimidine tract-b 98.3 9.6E-07 2.1E-11 92.9 6.8 76 348-424 210-289 (544)
71 KOG0110 RNA-binding protein (R 98.3 1.3E-06 2.8E-11 98.2 7.9 73 350-423 517-596 (725)
72 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.1E-06 2.3E-11 96.7 6.5 75 348-423 405-483 (940)
73 KOG0110 RNA-binding protein (R 98.2 1.1E-06 2.4E-11 98.8 4.6 79 348-427 613-695 (725)
74 KOG0116 RasGAP SH3 binding pro 98.2 3.9E-06 8.5E-11 91.3 7.8 74 349-424 289-366 (419)
75 KOG0151 Predicted splicing reg 98.2 6.5E-06 1.4E-10 92.6 9.2 78 345-423 171-255 (877)
76 KOG4454 RNA binding protein (R 98.1 8.9E-07 1.9E-11 88.1 2.1 78 345-423 6-85 (267)
77 KOG0106 Alternative splicing f 98.0 3.8E-06 8.1E-11 84.1 4.1 71 349-424 2-72 (216)
78 KOG4212 RNA-binding protein hn 98.0 1E-05 2.2E-10 87.1 6.9 73 346-421 534-607 (608)
79 KOG0533 RRM motif-containing p 97.8 4.9E-05 1.1E-09 77.5 8.3 78 346-424 81-161 (243)
80 KOG2135 Proteins containing th 97.8 4.6E-05 9.9E-10 82.8 8.4 78 346-426 370-447 (526)
81 KOG4209 Splicing factor RNPS1, 97.7 3.3E-05 7E-10 78.3 5.2 78 346-425 99-180 (231)
82 KOG0226 RNA-binding proteins [ 97.7 3.7E-05 8.1E-10 78.1 4.0 78 347-425 189-270 (290)
83 KOG4660 Protein Mei2, essentia 97.6 4.4E-05 9.5E-10 84.3 4.0 74 343-418 70-143 (549)
84 KOG1190 Polypyrimidine tract-b 97.5 0.00045 9.7E-09 74.3 9.0 77 348-425 297-373 (492)
85 PF00642 zf-CCCH: Zinc finger 97.4 2.7E-05 5.9E-10 53.3 -0.1 23 192-214 3-26 (27)
86 KOG1457 RNA binding protein (c 97.3 0.0011 2.3E-08 66.7 8.6 86 346-432 32-125 (284)
87 KOG1548 Transcription elongati 97.2 0.0011 2.3E-08 70.2 7.8 75 348-423 134-219 (382)
88 KOG4211 Splicing factor hnRNP- 97.1 0.0016 3.4E-08 71.5 8.6 77 346-425 8-86 (510)
89 smart00356 ZnF_C3H1 zinc finge 97.0 0.00039 8.4E-09 46.6 1.7 22 193-214 5-26 (27)
90 PF04059 RRM_2: RNA recognitio 97.0 0.0039 8.4E-08 55.4 8.2 77 349-426 2-88 (97)
91 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0033 7.1E-08 49.7 5.9 52 349-404 2-53 (53)
92 KOG1855 Predicted RNA-binding 96.8 0.0012 2.5E-08 71.5 3.9 124 284-409 161-308 (484)
93 KOG0147 Transcriptional coacti 96.7 0.00076 1.7E-08 74.7 2.2 74 348-423 179-256 (549)
94 KOG0106 Alternative splicing f 96.7 0.0011 2.3E-08 66.7 3.0 69 348-421 99-167 (216)
95 PF08777 RRM_3: RNA binding mo 96.5 0.0031 6.7E-08 56.6 4.6 56 350-408 3-58 (105)
96 KOG4210 Nuclear localization s 96.5 0.0016 3.6E-08 68.0 2.8 80 347-428 183-267 (285)
97 COG5175 MOT2 Transcriptional r 96.5 0.0062 1.3E-07 64.4 6.9 78 348-425 114-203 (480)
98 KOG1548 Transcription elongati 96.5 0.019 4E-07 61.1 10.4 93 332-425 250-352 (382)
99 KOG4211 Splicing factor hnRNP- 96.5 0.0081 1.8E-07 66.2 8.0 75 347-423 102-180 (510)
100 KOG0120 Splicing factor U2AF, 96.3 0.0055 1.2E-07 68.3 6.0 192 347-556 288-493 (500)
101 PF11608 Limkain-b1: Limkain b 96.3 0.015 3.2E-07 50.7 7.0 69 349-424 3-76 (90)
102 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.019 4.2E-07 51.3 7.6 69 350-423 8-90 (100)
103 KOG0120 Splicing factor U2AF, 96.2 0.012 2.6E-07 65.7 7.6 61 364-424 424-491 (500)
104 KOG0129 Predicted RNA-binding 95.9 0.028 6.1E-07 62.4 8.8 78 344-423 366-452 (520)
105 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0041 8.9E-08 39.4 1.4 19 194-214 1-19 (19)
106 KOG4206 Spliceosomal protein s 95.8 0.034 7.3E-07 56.1 8.2 79 343-423 141-220 (221)
107 KOG0129 Predicted RNA-binding 95.8 0.021 4.6E-07 63.3 7.2 59 346-406 257-325 (520)
108 KOG2185 Predicted RNA-processi 95.6 0.0044 9.6E-08 66.8 1.2 27 191-217 139-165 (486)
109 KOG1995 Conserved Zn-finger pr 95.5 0.017 3.8E-07 61.5 4.9 83 345-428 63-157 (351)
110 smart00517 PolyA C-terminal do 95.4 0.016 3.5E-07 47.9 3.4 51 8-61 11-61 (64)
111 PF00658 PABP: Poly-adenylate 95.4 0.01 2.2E-07 50.1 2.2 50 8-60 22-71 (72)
112 KOG1457 RNA binding protein (c 95.0 0.025 5.5E-07 57.2 4.2 66 346-412 208-273 (284)
113 PF08952 DUF1866: Domain of un 95.0 0.1 2.2E-06 49.7 8.0 77 342-423 21-105 (146)
114 KOG4849 mRNA cleavage factor I 94.9 0.023 5E-07 60.4 3.8 73 350-423 82-160 (498)
115 KOG3152 TBP-binding protein, a 94.7 0.018 3.8E-07 59.1 2.3 69 347-416 73-157 (278)
116 KOG2314 Translation initiation 94.7 0.038 8.2E-07 62.0 4.9 73 349-423 59-142 (698)
117 KOG1456 Heterogeneous nuclear 94.5 0.14 3.1E-06 55.1 8.5 79 346-425 285-363 (494)
118 KOG1190 Polypyrimidine tract-b 94.0 0.13 2.8E-06 55.9 6.9 78 345-423 411-489 (492)
119 KOG1677 CCCH-type Zn-finger pr 93.9 0.025 5.4E-07 59.6 1.4 27 188-214 173-200 (332)
120 KOG4307 RNA binding protein RB 93.8 0.07 1.5E-06 61.1 4.8 81 345-426 431-515 (944)
121 KOG2202 U2 snRNP splicing fact 93.5 0.033 7.1E-07 57.2 1.4 59 364-422 83-145 (260)
122 KOG1996 mRNA splicing factor [ 93.1 0.21 4.6E-06 52.4 6.6 61 363-423 300-365 (378)
123 KOG0112 Large RNA-binding prot 92.9 0.21 4.5E-06 58.8 6.8 85 344-431 451-537 (975)
124 KOG2891 Surface glycoprotein [ 91.9 0.14 3.1E-06 53.2 3.5 39 345-383 146-195 (445)
125 KOG4676 Splicing factor, argin 89.9 0.51 1.1E-05 51.3 5.4 74 349-424 8-88 (479)
126 KOG4307 RNA binding protein RB 89.4 1.1 2.4E-05 51.9 7.8 72 348-420 867-942 (944)
127 PF10309 DUF2414: Protein of u 89.1 1.8 3.8E-05 35.7 6.8 55 348-407 5-62 (62)
128 PF04847 Calcipressin: Calcipr 89.1 1.1 2.5E-05 44.2 6.9 62 362-425 8-71 (184)
129 KOG2193 IGF-II mRNA-binding pr 89.0 0.36 7.7E-06 52.9 3.5 80 349-431 2-82 (584)
130 KOG1365 RNA-binding protein Fu 88.4 0.26 5.6E-06 53.4 2.0 71 350-422 163-240 (508)
131 KOG4285 Mitotic phosphoprotein 88.4 0.98 2.1E-05 47.7 6.1 62 362-426 209-271 (350)
132 KOG1039 Predicted E3 ubiquitin 88.3 0.17 3.6E-06 54.5 0.5 22 193-214 9-30 (344)
133 PF15023 DUF4523: Protein of u 87.7 2.2 4.8E-05 40.9 7.5 75 344-422 82-159 (166)
134 KOG0112 Large RNA-binding prot 87.1 0.15 3.3E-06 59.9 -0.7 79 345-424 369-450 (975)
135 KOG2068 MOT2 transcription fac 87.0 0.26 5.6E-06 52.5 1.0 77 349-425 78-163 (327)
136 KOG0128 RNA-binding protein SA 87.0 0.081 1.8E-06 61.8 -2.9 72 349-421 668-743 (881)
137 KOG0105 Alternative splicing f 86.9 3 6.4E-05 41.6 8.1 68 350-421 117-186 (241)
138 KOG1595 CCCH-type Zn-finger pr 85.9 0.49 1.1E-05 53.2 2.5 35 180-214 224-258 (528)
139 KOG0128 RNA-binding protein SA 85.6 0.39 8.5E-06 56.4 1.5 76 348-424 736-814 (881)
140 KOG1456 Heterogeneous nuclear 83.9 2.7 5.8E-05 45.8 6.7 77 348-425 120-199 (494)
141 KOG2416 Acinus (induces apopto 83.6 1.3 2.8E-05 50.5 4.4 77 344-423 440-520 (718)
142 KOG1365 RNA-binding protein Fu 82.8 1.2 2.6E-05 48.4 3.6 75 348-423 280-360 (508)
143 PF10650 zf-C3H1: Putative zin 82.5 0.68 1.5E-05 31.0 1.1 19 194-213 2-21 (23)
144 KOG0115 RNA-binding protein p5 82.3 1.2 2.5E-05 46.2 3.2 74 349-423 32-112 (275)
145 KOG2253 U1 snRNP complex, subu 80.9 3.2 6.8E-05 47.9 6.2 98 315-422 11-108 (668)
146 PF12872 OST-HTH: OST-HTH/LOTU 80.7 2.2 4.7E-05 34.9 3.7 68 243-321 2-72 (74)
147 KOG2494 C3H1-type Zn-finger pr 77.8 0.8 1.7E-05 48.8 0.4 23 192-214 37-60 (331)
148 PF03880 DbpA: DbpA RNA bindin 76.5 6.6 0.00014 32.8 5.5 59 359-422 11-74 (74)
149 PF08675 RNA_bind: RNA binding 75.5 12 0.00025 33.0 6.7 55 348-408 9-63 (87)
150 KOG1763 Uncharacterized conser 74.8 1.2 2.5E-05 47.0 0.6 21 194-214 94-114 (343)
151 KOG1040 Polyadenylation factor 73.8 1.6 3.6E-05 46.7 1.4 22 193-214 106-128 (325)
152 COG5084 YTH1 Cleavage and poly 72.8 1.7 3.7E-05 45.8 1.2 24 192-215 134-158 (285)
153 KOG1492 C3H1-type Zn-finger pr 69.9 1.9 4.1E-05 43.9 0.8 22 193-214 207-229 (377)
154 KOG4210 Nuclear localization s 64.2 3.8 8.2E-05 43.1 1.7 78 347-425 87-168 (285)
155 KOG1677 CCCH-type Zn-finger pr 62.9 3.5 7.5E-05 43.5 1.2 27 188-214 128-156 (332)
156 PF03467 Smg4_UPF3: Smg-4/UPF3 62.7 8 0.00017 37.9 3.5 67 348-415 7-83 (176)
157 KOG1040 Polyadenylation factor 59.5 4 8.6E-05 43.9 0.9 26 189-214 74-99 (325)
158 KOG2591 c-Mpl binding protein, 54.0 26 0.00056 40.2 6.0 65 350-418 177-245 (684)
159 PF07576 BRAP2: BRCA1-associat 48.8 1.1E+02 0.0024 27.9 8.3 66 348-414 13-81 (110)
160 COG5152 Uncharacterized conser 47.1 7.7 0.00017 39.0 0.6 23 192-214 141-164 (259)
161 COG5084 YTH1 Cleavage and poly 43.9 12 0.00025 39.7 1.3 25 190-214 102-126 (285)
162 KOG4574 RNA-binding protein (c 43.5 17 0.00038 43.3 2.7 78 344-424 294-373 (1007)
163 KOG2494 C3H1-type Zn-finger pr 43.4 11 0.00024 40.4 1.1 30 184-214 63-92 (331)
164 KOG4454 RNA binding protein (R 41.1 5.4 0.00012 40.8 -1.5 67 348-415 80-153 (267)
165 KOG1492 C3H1-type Zn-finger pr 39.9 11 0.00024 38.5 0.4 23 192-215 261-283 (377)
166 COG5063 CTH1 CCCH-type Zn-fing 36.0 18 0.0004 38.5 1.4 26 189-214 271-297 (351)
167 PF15513 DUF4651: Domain of un 35.2 58 0.0013 27.1 3.8 19 364-382 9-27 (62)
168 COG5252 Uncharacterized conser 34.2 15 0.00033 37.9 0.4 22 193-214 86-107 (299)
169 KOG2202 U2 snRNP splicing fact 27.6 28 0.00061 36.3 1.0 27 188-214 148-174 (260)
170 KOG0804 Cytoplasmic Zn-finger 26.5 1.6E+02 0.0035 33.2 6.6 66 348-414 74-142 (493)
171 KOG2333 Uncharacterized conser 24.6 48 0.001 37.7 2.2 22 195-216 117-139 (614)
172 KOG1039 Predicted E3 ubiquitin 23.7 36 0.00079 37.0 1.1 26 189-214 246-273 (344)
173 PF11767 SET_assoc: Histone ly 23.5 4.4E+02 0.0095 22.0 7.7 56 359-419 10-65 (66)
174 KOG4019 Calcineurin-mediated s 23.4 45 0.00097 33.3 1.5 75 350-426 12-91 (193)
175 KOG2318 Uncharacterized conser 21.4 2.7E+02 0.0059 32.5 7.2 73 345-418 171-299 (650)
176 KOG4660 Protein Mei2, essentia 20.4 1.1E+02 0.0023 35.3 3.9 62 350-412 390-456 (549)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=5.2e-15 Score=138.60 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
....++|||++| ++.+||++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|+|+
T Consensus 31 ~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999 899999999999999999999999986 689999999999999999999999999999999999
Q ss_pred ecccccc
Q 008042 421 PYREKSR 427 (579)
Q Consensus 421 ~A~~K~k 427 (579)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9987654
No 2
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.8e-15 Score=159.93 Aligned_cols=151 Identities=23% Similarity=0.367 Sum_probs=114.8
Q ss_pred HHHhhccccccccccccccccccCCchhHHHHHHhhhccccccCCCCcchhhhccccc---cccccCCCCCCCCCCCCCC
Q 008042 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVP---KYLEYSGEKSDPGGIVAGS 348 (579)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkN~ir~idr~~GQ~~vvl~ed~~---k~~~~R~~r~d~~~~~~~~ 348 (579)
+||+||.+.+...++.++++ ..+||+|.++-.|. ..++.+.-.|.+-.+- +..-+ ||.+ +++ ......
T Consensus 54 lFe~yg~V~einl~kDk~t~-~s~gcCFv~~~trk-~a~~a~~Alhn~ktlp-G~~~pvqvk~Ad--~E~----er~~~e 124 (510)
T KOG0144|consen 54 LFEKYGNVYEINLIKDKSTG-QSKGCCFVKYYTRK-EADEAINALHNQKTLP-GMHHPVQVKYAD--GER----ERIVEE 124 (510)
T ss_pred HHHHhCceeEEEeecccccC-cccceEEEEeccHH-HHHHHHHHhhcccccC-CCCcceeecccc--hhh----hccccc
Confidence 79999999999888877776 55689988887665 4455555555443221 11111 2222 122 112557
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCc-eE--cCeEEEEeec
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPH-FV--CGARVLVKPY 422 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~-~I--~Gr~V~Vk~A 422 (579)
+|||||-| +..+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+. .+ |...+.|+||
T Consensus 125 ~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 125 RKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred hhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 89999999 889999999999999999999999996 89999999999999999999999984 34 5578999999
Q ss_pred cccccchhhh
Q 008042 423 REKSRLVDRK 432 (579)
Q Consensus 423 ~~K~k~~~r~ 432 (579)
.+++.+..++
T Consensus 204 Dtqkdk~~~~ 213 (510)
T KOG0144|consen 204 DTQKDKDGKR 213 (510)
T ss_pred ccCCCchHHH
Confidence 8877666554
No 3
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=150.72 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhC-CCceEcCeEEEEeeccc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG-NPHFVCGARVLVKPYRE 424 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~m-n~~~I~Gr~V~Vk~A~~ 424 (579)
...++||||+| ...++|.+|+++|.+||+|+.|++.. .+++|||+|.+.++|+.|.++. |...|+|.+|+|.|..+
T Consensus 226 ~~I~tLyIg~l-~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGL-NDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEeccc-ccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45679999999 67999999999999999999999998 8889999999999999999885 77889999999999887
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.49 E-value=1e-13 Score=144.47 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
..+|||+|| ++++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|+..|||..|+||.|+|.++.
T Consensus 269 ~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 457999999 889999999999999999999999986 689999999999999999999999999999999999998
Q ss_pred cccc
Q 008042 424 EKSR 427 (579)
Q Consensus 424 ~K~k 427 (579)
.|.+
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 8764
No 5
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=3.6e-14 Score=140.79 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...|||||+| .|+++.|+|++||++||+|+++.|+.| ++||||||||.+.|.|.+|++. ...+|+||+..|+.|
T Consensus 11 ~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 4579999999 899999999999999999999999997 8999999999999999999999 678899999999887
Q ss_pred cc
Q 008042 423 RE 424 (579)
Q Consensus 423 ~~ 424 (579)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 53
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.6e-13 Score=138.52 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=107.8
Q ss_pred HHHhhccccccccccccccccccCCchhHHHHHHhhhccccccCCCCcchhhhccccccccccCCCCCCC----------
Q 008042 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDP---------- 341 (579)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkN~ir~idr~~GQ~~vvl~ed~~k~~~~R~~r~d~---------- 341 (579)
-|.+||++-.+..+..- .-.+.+||+|..+--+. +.-+.|+...|| |++.|.-|..+
T Consensus 82 aF~pFGevS~akvirD~-~T~KsKGYgFVSf~~k~-dAEnAI~~MnGq-----------WlG~R~IRTNWATRKp~e~n~ 148 (321)
T KOG0148|consen 82 AFAPFGEVSDAKVIRDM-NTGKSKGYGFVSFPNKE-DAENAIQQMNGQ-----------WLGRRTIRTNWATRKPSEMNG 148 (321)
T ss_pred HhccccccccceEeecc-cCCcccceeEEeccchH-HHHHHHHHhCCe-----------eeccceeeccccccCccccCC
Confidence 37788888665543322 22344589888776666 555677766664 34333322211
Q ss_pred ---------CCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceE
Q 008042 342 ---------GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (579)
Q Consensus 342 ---------~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I 412 (579)
....+.+.+||||++ ..-+||+++|+.|+.||+|.+|||-+ -+||+||.|++.|.|.+||..||+..|
T Consensus 149 ~~ltfdeV~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei 225 (321)
T KOG0148|consen 149 KPLTFDEVYNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEI 225 (321)
T ss_pred CCccHHHHhccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCcee
Confidence 233466789999999 56799999999999999999999998 789999999999999999999999999
Q ss_pred cCeEEEEeeccccccch
Q 008042 413 CGARVLVKPYREKSRLV 429 (579)
Q Consensus 413 ~Gr~V~Vk~A~~K~k~~ 429 (579)
.|..|+|.|-++-....
T Consensus 226 ~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 226 GGQLVRCSWGKEGDDGI 242 (321)
T ss_pred CceEEEEeccccCCCCC
Confidence 99999999988765433
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=4.2e-13 Score=139.86 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...+|||++| +.++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 2 ~~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3579999999 899999999999999999999999986 68999999999999999999999999999999999998
Q ss_pred ccccc
Q 008042 423 REKSR 427 (579)
Q Consensus 423 ~~K~k 427 (579)
+++..
T Consensus 81 ~~~~~ 85 (352)
T TIGR01661 81 RPSSD 85 (352)
T ss_pred ccccc
Confidence 87653
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.8e-13 Score=139.63 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
....++|+|.|| ++.+.|.||+.+|++||+|.||.|+.+ -+||||||||++.++|++|-+++++..|.||+|+|+.|
T Consensus 93 ~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344679999999 999999999999999999999999996 68999999999999999999999999999999999999
Q ss_pred ccc
Q 008042 423 REK 425 (579)
Q Consensus 423 ~~K 425 (579)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 876
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4.2e-13 Score=106.99 Aligned_cols=67 Identities=21% Similarity=0.474 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 351 IyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
|||+|| +..+|+++|+++|++||+|..+.++.+ +++|||||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 899999999999999999999999884 7899999999999999999999999999999885
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.42 E-value=3.9e-13 Score=142.55 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEe
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVK 420 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~G--r~V~Vk 420 (579)
...+|||++| ++.+||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.||++.+.| +.|.|+
T Consensus 192 ~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 4568999999 899999999999999999999999986 568999999999999999999999999977 689999
Q ss_pred eccccccc
Q 008042 421 PYREKSRL 428 (579)
Q Consensus 421 ~A~~K~k~ 428 (579)
++.++.+.
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 99876554
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.41 E-value=4.2e-13 Score=150.57 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
..++|||+|| +.++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999999 899999999999999999999999986 68999999999999999999999999999999999998
Q ss_pred cccc
Q 008042 423 REKS 426 (579)
Q Consensus 423 ~~K~ 426 (579)
..+.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8643
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.40 E-value=4.4e-13 Score=149.26 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
....+|||+|| ++++|+++|+++|++||.|.+|+|+.| ++||||||+|.+.++|.+|+..||+..|+|+.|.|.+|
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44668999999 899999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccccchh
Q 008042 423 REKSRLVD 430 (579)
Q Consensus 423 ~~K~k~~~ 430 (579)
..|..+..
T Consensus 362 ~~k~~~~~ 369 (562)
T TIGR01628 362 QRKEQRRA 369 (562)
T ss_pred cCcHHHHH
Confidence 98765543
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.2e-12 Score=138.71 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
....++|||++| ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||+..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 356789999999 899999999999999999999999986 689999999999999999999999999999999999
Q ss_pred eccccc
Q 008042 421 PYREKS 426 (579)
Q Consensus 421 ~A~~K~ 426 (579)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.6e-12 Score=132.14 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
.++|||+|| ++.+||++|+++|+.||+|++|+|+.| .++|||||+|.++++|+.|+. ||+..|+|+.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 899999999999999999999999998 478999999999999999996 7999999999999997643
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.35 E-value=2.5e-12 Score=143.31 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEE
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARV 417 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~----Gr~V 417 (579)
....++|||+|| +.++|+++|+++|++||+|.+|.|+.+ ++||||||+|.+.++|.+|++.+++..|. |+.+
T Consensus 175 ~~~~~~l~V~nl-~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNL-DPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 345679999999 889999999999999999999999986 67999999999999999999999999999 9999
Q ss_pred EEeeccccccc
Q 008042 418 LVKPYREKSRL 428 (579)
Q Consensus 418 ~Vk~A~~K~k~ 428 (579)
.|.+++.+.+.
T Consensus 254 ~v~~a~~k~er 264 (562)
T TIGR01628 254 YVGRAQKRAER 264 (562)
T ss_pred EeecccChhhh
Confidence 99999877655
No 16
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=8e-12 Score=127.69 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 008042 337 EKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (579)
Q Consensus 337 ~r~d~~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I 412 (579)
...|....+.+.+||||+.| +++++|..|++.|+.||+|..|+|++| ++||||||+|+++-++..|++..++..|
T Consensus 90 P~~dp~a~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCcccCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 45566788889999999999 899999999999999999999999997 8999999999999999999999999999
Q ss_pred cCeEEEEeeccc
Q 008042 413 CGARVLVKPYRE 424 (579)
Q Consensus 413 ~Gr~V~Vk~A~~ 424 (579)
+|++|.|..-..
T Consensus 169 dgrri~VDvERg 180 (335)
T KOG0113|consen 169 DGRRILVDVERG 180 (335)
T ss_pred cCcEEEEEeccc
Confidence 999999976443
No 17
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.7e-12 Score=127.97 Aligned_cols=80 Identities=26% Similarity=0.405 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...+|||||+| ..++||.-|...|-.||.|.+|.||.| ++||||||+|+..|+|.+|+..||..+++||.|+|+.
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34689999999 678999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred ccccc
Q 008042 422 YREKS 426 (579)
Q Consensus 422 A~~K~ 426 (579)
|+|..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98754
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=8.3e-12 Score=134.00 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCH--HHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFA--ETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~--E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
....+|||||| .+.+|+++|+..|++||.|.+|.|++...||||||+|... ..+.+|++.||+..+.||.|+|..|+
T Consensus 8 ~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34569999999 9999999999999999999999999877799999999987 78999999999999999999999987
Q ss_pred cc
Q 008042 424 EK 425 (579)
Q Consensus 424 ~K 425 (579)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 63
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.25 E-value=2.2e-11 Score=98.45 Aligned_cols=67 Identities=36% Similarity=0.568 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 351 IyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
|||+|| ++.+++++|+++|+.||.|..|++..+ +.+|+|||+|.+.++|++|++..++..|+|+.|+
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 889999999999999999999999986 3589999999999999999999988999999885
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.9e-11 Score=137.45 Aligned_cols=78 Identities=19% Similarity=0.365 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...++|||||| ++.++|++|+++|++||+|.+|+|+.| ++||||||+|.+.++|++|++.||+..|+||+|+|.+
T Consensus 105 ~~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34579999999 899999999999999999999999986 7899999999999999999999999999999999986
Q ss_pred ccc
Q 008042 422 YRE 424 (579)
Q Consensus 422 A~~ 424 (579)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=5e-11 Score=93.09 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
+|||+++ +..+++++|+++|.+||+|.++++..+ ..+|+|||+|.+.+.|+.|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 889999999999999999999999885 367999999999999999999999999999999874
No 22
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.9e-11 Score=120.66 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
+...+|||+|| ++.+||++|+++|+.||+|++|+|++| +.+|||||+|.+++.|+.|+. |++..|.++.|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 34579999999 899999999999999999999999997 678999999999999999995 599999999999988654
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2e-11 Score=123.54 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
.--+|||.| ...++.|+||+.|.+||+|.+++|++| ++||||||.|-+.++|+.||..||++.|.+|.|+-+||.
T Consensus 62 hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 448999999 889999999999999999999999998 899999999999999999999999999999999999998
Q ss_pred ccccc
Q 008042 424 EKSRL 428 (579)
Q Consensus 424 ~K~k~ 428 (579)
.|...
T Consensus 141 RKp~e 145 (321)
T KOG0148|consen 141 RKPSE 145 (321)
T ss_pred cCccc
Confidence 87743
No 24
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.20 E-value=1.4e-11 Score=128.64 Aligned_cols=153 Identities=22% Similarity=0.328 Sum_probs=103.8
Q ss_pred HHHhhccccccccccccccccccCCchhHHHHHHhhhccccccCCCCcchhhhccccccccccCCCCCCCCCCCCCCcEE
Q 008042 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQI 351 (579)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkN~ir~idr~~GQ~~vvl~ed~~k~~~~R~~r~d~~~~~~~~rtI 351 (579)
||..||.++++-....... .-..||+|..+...---.-.+..+.|--.-..+ |..+.+ .|.+.... ......++|
T Consensus 26 yf~~~Gev~d~~vm~d~~t-~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~v--e~k~av-~r~~~~~~-~~~~~tkki 100 (311)
T KOG4205|consen 26 YFSQFGEVTDCVVMRDPST-GRSRGFGFVTFATPEGVDAVLNARTHKLDGRSV--EPKRAV-SREDQTKV-GRHLRTKKI 100 (311)
T ss_pred HhcccCceeeEEEeccCCC-CCcccccceecCCCcchheeecccccccCCccc--cceecc-Cccccccc-ccccceeEE
Confidence 7788999988765554433 234477766554222111122233322110000 000000 11111111 112257799
Q ss_pred EEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccccc
Q 008042 352 YLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSR 427 (579)
Q Consensus 352 yVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K~k 427 (579)
|||+| +..++|+++++||.+||.|.++-+++| +.||||||+|..++.+++++.. ..|.|+|+.|.|+.|.+|..
T Consensus 101 FvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 101 FVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred EecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchhh
Confidence 99999 899999999999999999999999997 7899999999999999999998 89999999999999999976
Q ss_pred chhh
Q 008042 428 LVDR 431 (579)
Q Consensus 428 ~~~r 431 (579)
....
T Consensus 179 ~~~~ 182 (311)
T KOG4205|consen 179 MQST 182 (311)
T ss_pred cccc
Confidence 6543
No 25
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=5.2e-11 Score=114.12 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccccc
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K~ 426 (579)
..++|||||| ...+++.+|...|+.||+|..|.|-. ...|||||+|+++.+|+.|+..|++..|||.+|.|....-+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4679999999 89999999999999999999999987 689999999999999999999999999999999998876443
No 26
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=9.9e-11 Score=112.27 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=72.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
..+|||+|| ++.+|+++|+++|.+||+|..|+|+.| +.||||||+|.+.+.|..|++.+++..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999 899999999999999999999999886 789999999999999999999999999999999999966
Q ss_pred c
Q 008042 424 E 424 (579)
Q Consensus 424 ~ 424 (579)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.17 E-value=9.9e-11 Score=126.73 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
+..++|||+|| +..+|+++|+++|++||.|..|.|+.+ +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 45789999999 889999999999999999999999975 6799999999999999999999999999999999999
Q ss_pred ccc
Q 008042 422 YRE 424 (579)
Q Consensus 422 A~~ 424 (579)
+..
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 874
No 28
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1.4e-10 Score=90.08 Aligned_cols=67 Identities=28% Similarity=0.406 Sum_probs=61.6
Q ss_pred EcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 353 LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 353 Vg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
|++| +..+++++|+++|++||.|..+.|..+ +++|||||+|.+.++|..|+..+++..+.|++|.|.
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5788 788999999999999999999999885 348999999999999999999999999999999873
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=8.2e-11 Score=117.67 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...+|-|.|| +.+++|++|+++|..||.|..|.|.+| .+||||||+|.+.++|.+|++.|||+-+++-.|.|.|+
T Consensus 188 D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4668999999 899999999999999999999999997 78999999999999999999999999999999999999
Q ss_pred ccc
Q 008042 423 REK 425 (579)
Q Consensus 423 ~~K 425 (579)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=1.6e-10 Score=126.59 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...++|||+|| ++.+|+++|+++|++||.|..+.|+.+ +++|||||+|.+.+.|..|++.||+..|.|+.|.|.+
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999 899999999999999999999999885 5899999999999999999999999999999999999
Q ss_pred cccc
Q 008042 422 YREK 425 (579)
Q Consensus 422 A~~K 425 (579)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.5e-10 Score=127.41 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
.+...+|||+|| ++ .+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|..|+..||++.|.|+.|+|.+++
T Consensus 272 ~~~~~~l~v~nL-~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGL-HQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCC-CCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 356789999999 65 7999999999999999999999986 58999999999999999999999999999999999886
Q ss_pred ccc
Q 008042 424 EKS 426 (579)
Q Consensus 424 ~K~ 426 (579)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 543
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.14 E-value=1.7e-10 Score=129.44 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcC--CCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF--GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqF--G~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
...++|||+|| ++.+||++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999 8999999999999999 999999885 5799999999999999999999999999999999998
Q ss_pred cccc
Q 008042 424 EKSR 427 (579)
Q Consensus 424 ~K~k 427 (579)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 8654
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.13 E-value=1.9e-10 Score=126.69 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHh--CCCceEcCeEEEEeeccc
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAK--GNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~--mn~~~I~Gr~V~Vk~A~~ 424 (579)
++++|||+|| ++.+||++|+++|++||+|.+|.|+. +||||||+|.+.++|++|++. +++..|.|+.|.|.++..
T Consensus 1 ps~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 3689999999 89999999999999999999999998 789999999999999999996 478999999999999875
Q ss_pred c
Q 008042 425 K 425 (579)
Q Consensus 425 K 425 (579)
+
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 4
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=7e-11 Score=115.79 Aligned_cols=78 Identities=26% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
....+|-|-|| .+.++.++|+..|++||.|-||.|+.| ++||||||.|.+..+|+.|++.|++..|+|+.|.|..
T Consensus 11 ~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34568999999 899999999999999999999999998 7899999999999999999999999999999999987
Q ss_pred ccc
Q 008042 422 YRE 424 (579)
Q Consensus 422 A~~ 424 (579)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 753
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.12 E-value=5.7e-11 Score=114.49 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...||||||| +..++++.|+++|-+.|+|.+++|++| .++|||||+|.++|+|+-|++.||...+.||+|+|+.+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3569999999 899999999999999999999999997 68999999999999999999999999999999999988
Q ss_pred c
Q 008042 423 R 423 (579)
Q Consensus 423 ~ 423 (579)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=3.2e-10 Score=122.84 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...++|||+|| +..+|+++|+++|++||+|.+|+|+.| +++|||||+|.+.++|++|+. |++..+.|+.|.|..
T Consensus 87 ~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 34679999999 899999999999999999999999986 679999999999999999997 599999999999988
Q ss_pred cccc
Q 008042 422 YREK 425 (579)
Q Consensus 422 A~~K 425 (579)
....
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 6543
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.11 E-value=1.9e-10 Score=129.09 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~-Gr~V~Vk~A 422 (579)
...+|||++| +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4579999999 899999999999999999999999986 78999999999999999999999998885 788878766
Q ss_pred cc
Q 008042 423 RE 424 (579)
Q Consensus 423 ~~ 424 (579)
..
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 54
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.10 E-value=6.6e-10 Score=87.18 Aligned_cols=71 Identities=30% Similarity=0.407 Sum_probs=65.9
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCC---CCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQ---KRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~dr---sRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
+|||++| +..+++++|+++|..||+|..+.+..+. .+|+|||+|.+.+.|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999 8889999999999999999999998863 489999999999999999999999999999999864
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=4.3e-10 Score=88.02 Aligned_cols=56 Identities=29% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 366 VSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 366 Lr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
|+++|++||+|.+|.+..+. +++|||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998843 599999999999999999999999999999999875
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=5e-10 Score=119.60 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
.....+-|||.|| ..++|||.|++.|++||.|+.|..++| ||||.|...++|.+|++.||+..|+|..|.|..|+
T Consensus 255 ~ms~VKvLYVRNL-~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 255 TMSKVKVLYVRNL-MESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred hhhheeeeeeecc-chhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4456789999999 889999999999999999999998865 99999999999999999999999999999999999
Q ss_pred ccccc
Q 008042 424 EKSRL 428 (579)
Q Consensus 424 ~K~k~ 428 (579)
|-.+.
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 85543
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=9.9e-11 Score=112.87 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
..-..+.-||||+| ++++||.||-..|++||+|++|.+++| +++||||+.|++..+--.|+..+||..|.||.|+
T Consensus 30 ~~YkdsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred hhcccceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 34455678999999 999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred Eeec
Q 008042 419 VKPY 422 (579)
Q Consensus 419 Vk~A 422 (579)
|...
T Consensus 109 VDHv 112 (219)
T KOG0126|consen 109 VDHV 112 (219)
T ss_pred eeec
Confidence 9643
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=1.8e-09 Score=117.44 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=75.4
Q ss_pred CCCC-cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008042 345 VAGS-RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (579)
Q Consensus 345 ~~~~-rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~V 419 (579)
.+.. +.||||++ +++++|++|.++|++.|+|.++++++| +.|||||++|.+.++|..|++.+|+..+.||+|+|
T Consensus 14 ~~~~~~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 14 SPGLSSSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred CcccccceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 3444 89999999 899999999999999999999999997 88999999999999999999999999999999999
Q ss_pred eeccccc
Q 008042 420 KPYREKS 426 (579)
Q Consensus 420 k~A~~K~ 426 (579)
.++....
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 9987544
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=4.9e-10 Score=117.23 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...+||||+| +|.+++|.|++||++||+|.+|.|++| ++|||+||+|++.+.+.+++.. ..|.|+|+.|.++.|
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5679999999 999999999999999999999999997 8999999999999999999988 789999999999999
Q ss_pred cccccch
Q 008042 423 REKSRLV 429 (579)
Q Consensus 423 ~~K~k~~ 429 (579)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 9876443
No 44
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=2.7e-09 Score=87.74 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=51.3
Q ss_pred HHHHHHHhh----cCCCEEEEE-eecC------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008042 363 EQDVSNYFS----KFGPVQDVR-IPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (579)
Q Consensus 363 EedLr~~Fs----qFG~V~~Vr-I~~d------rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~V 419 (579)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|+..||+..++|+.|.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 5443 57999999999999999999999999999999986
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=3.8e-09 Score=94.03 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
..++-|||.|| ++.+|.|++-++|++||.|..|||=.. .-||-|||.|++..+|++|++.|++..++++-+.|-.+++
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34788999999 899999999999999999999999664 6899999999999999999999999999999999988765
Q ss_pred c
Q 008042 425 K 425 (579)
Q Consensus 425 K 425 (579)
-
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.92 E-value=1.1e-09 Score=119.60 Aligned_cols=154 Identities=20% Similarity=0.268 Sum_probs=105.9
Q ss_pred hhHHHhhcccccccccccc-ccccccCCch------hHHHHHHhhhccccccCCCCcchhhhccccccccc-cCCCCCCC
Q 008042 270 MMYYEKYGKTLQAEGYLTE-SQRHGKAGYS------LTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLE-YSGEKSDP 341 (579)
Q Consensus 270 ~~y~ek~G~~l~~~~~~~e-sqR~gk~Gys------~~k~l~~lkN~ir~idr~~GQ~~vvl~ed~~k~~~-~R~~r~d~ 341 (579)
..+|...|++.-+..+... ++|.++.+|- -+-+..-|. -.+..|+..++...+++|-.. .-..-.+.
T Consensus 197 ~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLs-----Gqrllg~pv~vq~sEaeknr~a~~s~a~~~ 271 (549)
T KOG0147|consen 197 EEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALS-----GQRLLGVPVIVQLSEAEKNRAANASPALQG 271 (549)
T ss_pred HHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhc-----CCcccCceeEecccHHHHHHHHhccccccc
Confidence 3467778888776655433 4554555552 011111121 123445555555555554321 11111222
Q ss_pred CCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 008042 342 GGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (579)
Q Consensus 342 ~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V 417 (579)
+...-+.+.+||||| .+++||++|+.+|+.||+|+.|.++.| +++|||||+|.+.+.|++|+++||+.+|-||.|
T Consensus 272 k~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~i 350 (549)
T KOG0147|consen 272 KGFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLI 350 (549)
T ss_pred cccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceE
Confidence 222333344999999 999999999999999999999999987 899999999999999999999999999999999
Q ss_pred EEeeccccccch
Q 008042 418 LVKPYREKSRLV 429 (579)
Q Consensus 418 ~Vk~A~~K~k~~ 429 (579)
+|....++.+..
T Consensus 351 kV~~v~~r~~~~ 362 (549)
T KOG0147|consen 351 KVSVVTERVDTK 362 (549)
T ss_pred EEEEeeeecccc
Confidence 999887765543
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=7.1e-10 Score=115.92 Aligned_cols=175 Identities=17% Similarity=0.293 Sum_probs=116.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
..+||||.+ .+++.|+.||..|..||+|.+|.+..| ++||||||+|+-+|.|+.|++.||+..++||.|+|.+-.
T Consensus 113 McRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 357999999 999999999999999999999999887 899999999999999999999999999999999998543
Q ss_pred cccc---chhhhhhhhhcCC-CCCCCCCCCC-cccccccccccCcHHHHhhhHHHHH--HHHHHHHHHHHhhhcccCCCC
Q 008042 424 EKSR---LVDRKYVEKMQHP-MFCSLHFTDG-DTELHTMPRACNNSRLLRKQLMEEH--EQAIELERRRLSEMQLACKPM 496 (579)
Q Consensus 424 ~K~k---~~~r~~~~~~~~~-~~~~p~~~~~-D~~l~~~~r~~~ne~mlrrq~~Ee~--~q~lE~qrr~l~~~q~~~k~~ 496 (579)
.-.. ..+.-+.+...+. .|-..-+.|. +.++.+++.-++ ++++.++...- .-..-..--|+.++|..+..+
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 2221 1111111111111 1222222232 556666655555 34455543211 011222333566777777778
Q ss_pred CCCCCCCCCcccccccC---------CCCCCCCCCchh
Q 008042 497 NHHSYFGYSMDELQVSE---------APAEQGDFPSAE 525 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 525 (579)
..++-||+...-++|.- .|....-+|+++
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aa 307 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAA 307 (544)
T ss_pred hhcchhhcccceEecccccCCCchhcCCCCcccCchHH
Confidence 88888888877777653 344455555543
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3e-09 Score=115.90 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
.-+|.|.|| +|.+.+.+|+.+|++||.|.+|.||+. +-.|||||+|....+|..|++.+|++.|+||.|-|.||.+
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 558999999 999999999999999999999999983 5679999999999999999999999999999999999999
Q ss_pred cccchh
Q 008042 425 KSRLVD 430 (579)
Q Consensus 425 K~k~~~ 430 (579)
|.....
T Consensus 196 Kd~ye~ 201 (678)
T KOG0127|consen 196 KDTYED 201 (678)
T ss_pred cccccc
Confidence 875543
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.9e-09 Score=97.92 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
..+.||||||| ++.+|||+|.++|++.|+|..|-|=.| ..-||+||.|-..++|+.|+.-+++..++.+.|.|.|
T Consensus 34 r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45789999999 899999999999999999999977666 4579999999999999999999999999999999987
Q ss_pred c
Q 008042 422 Y 422 (579)
Q Consensus 422 A 422 (579)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=6.4e-09 Score=111.28 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceE-cCeEEEEe
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV-CGARVLVK 420 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I-~Gr~V~Vk 420 (579)
+.-.-||||.| +.++.|++|.-+|++-|+|-++|||.| .+||||||+|.+.+.|+.|++.+|+++| -|+.|.|+
T Consensus 81 ~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 55679999999 899999999999999999999999997 7899999999999999999999999987 68888887
Q ss_pred ecc
Q 008042 421 PYR 423 (579)
Q Consensus 421 ~A~ 423 (579)
...
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 544
No 51
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.80 E-value=1.5e-08 Score=111.17 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcC------------CCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceE
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKF------------GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqF------------G~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I 412 (579)
....++|||||| ++.+|+++|+++|.+| +.|..+.+.. .+|||||+|.+.++|..||+ ||+..|
T Consensus 172 ~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345689999999 8999999999999975 4666776655 79999999999999999995 899999
Q ss_pred cCeEEEEeecc
Q 008042 413 CGARVLVKPYR 423 (579)
Q Consensus 413 ~Gr~V~Vk~A~ 423 (579)
.|+.|+|.+..
T Consensus 248 ~g~~l~v~r~~ 258 (509)
T TIGR01642 248 SNVFLKIRRPH 258 (509)
T ss_pred eCceeEecCcc
Confidence 99999997654
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.7e-08 Score=102.05 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
.....|.|.-| +..+|++++|.+|+..|+|++|++++| ++-|||||.|.++++|++|+..+|+..+..+.|+|.+
T Consensus 39 ~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44557888888 899999999999999999999999997 7899999999999999999999999999999999999
Q ss_pred ccccccc
Q 008042 422 YREKSRL 428 (579)
Q Consensus 422 A~~K~k~ 428 (579)
|+|-...
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9986543
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=7.8e-09 Score=105.83 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
...+.||+|||+ ..+++..+||..|.+||+|.+|.|+ |+|+||.|+..++|..|+..||+..++|++++|.....
T Consensus 75 sk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCC-CccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 456789999999 8899999999999999999999996 46999999999999999999999999999999987765
Q ss_pred c
Q 008042 425 K 425 (579)
Q Consensus 425 K 425 (579)
+
T Consensus 150 r 150 (346)
T KOG0109|consen 150 R 150 (346)
T ss_pred c
Confidence 4
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=5.6e-08 Score=106.27 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=72.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhC-----CC-ceEcCeEEE
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKG-----NP-HFVCGARVL 418 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~m-----n~-~~I~Gr~V~ 418 (579)
++|||.|| ++++||+.|.++|++||+|..+.|+.+ +++|.|||.|.+..+|..||+.. .+ ..|+||.|+
T Consensus 293 ~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 293 KTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred ceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 69999999 999999999999999999999999885 89999999999999999999985 33 789999999
Q ss_pred Eeeccccccc
Q 008042 419 VKPYREKSRL 428 (579)
Q Consensus 419 Vk~A~~K~k~ 428 (579)
|..|..+.+.
T Consensus 372 v~~Av~RkeA 381 (678)
T KOG0127|consen 372 VTLAVTRKEA 381 (678)
T ss_pred eeeccchHHH
Confidence 9999887654
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.6e-08 Score=98.01 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
...++|||||| +.++.|.+++++|.+||.|.+|.+--- ....||||.|+++.+|+.|+.--++..++|.+++|.++..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35679999999 889999999999999999999988442 3467999999999999999999999999999999998765
Q ss_pred c
Q 008042 425 K 425 (579)
Q Consensus 425 K 425 (579)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 56
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.2e-08 Score=94.72 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccc
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
-|||+++ ....||+++.+.|..||+|..+.+-.| ..+|||.|.|++.+.|++|++.+|+..|-|..|.|.|+--+
T Consensus 74 Ii~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 7999999 889999999999999999999999887 46999999999999999999999999999999999998755
Q ss_pred cc
Q 008042 426 SR 427 (579)
Q Consensus 426 ~k 427 (579)
+.
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 54
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.73 E-value=1.8e-08 Score=113.49 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccccc
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKS 426 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K~ 426 (579)
-++|||||+| +..++|.||++.|+.||+|++|.++. .||+|||+.....+|.+|+.+|+.+.+.++.|+|.|+.-++
T Consensus 420 ~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 3789999999 89999999999999999999999988 99999999999999999999999999999999999999887
Q ss_pred cch
Q 008042 427 RLV 429 (579)
Q Consensus 427 k~~ 429 (579)
-..
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 655
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=4e-08 Score=99.39 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=70.5
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccc
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
-|||-|| ..+.+|..|+.+|++||.|+.|+|++| +.||||||+..+.++|..|+..+|+..+.+|.+.|.+-..|
T Consensus 280 ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 280 CIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 8999999 888999999999999999999999998 88999999999999999999999999999999999875443
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=2.1e-08 Score=102.76 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccccccc
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K~k~ 428 (579)
-++||||| +..+++.+|+.+|++||+|.+|.|++ .||||..++...++.|+..|++..|+|..|.|+.++.|.+.
T Consensus 3 ~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNL-PREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCC-CcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 47999999 88999999999999999999999975 59999999999999999999999999999999999888554
Q ss_pred hh
Q 008042 429 VD 430 (579)
Q Consensus 429 ~~ 430 (579)
..
T Consensus 78 st 79 (346)
T KOG0109|consen 78 ST 79 (346)
T ss_pred cc
Confidence 43
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.5e-08 Score=105.90 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=72.5
Q ss_pred EEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccccccc
Q 008042 351 IYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREKSRL 428 (579)
Q Consensus 351 IyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K~k~ 428 (579)
|||.|| +..++..+|.+.|+.||+|.+|++..+ .++|| ||.|++++.|++|++.||+..+.|+.|.|..+..+.++
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999 899999999999999999999999997 68999 99999999999999999999999999999988876654
Q ss_pred h
Q 008042 429 V 429 (579)
Q Consensus 429 ~ 429 (579)
.
T Consensus 157 ~ 157 (369)
T KOG0123|consen 157 E 157 (369)
T ss_pred c
Confidence 4
No 61
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=4.1e-08 Score=104.87 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCc-eE--cCeEEE
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPH-FV--CGARVL 418 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~-~I--~Gr~V~ 418 (579)
...-|+|||-+ +..++|.|||++|++||.|.+|.|++| +++||+||+|.+.++|.+|+..++.. .| ....|.
T Consensus 32 ~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34559999999 899999999999999999999999998 68999999999999999999998554 34 346788
Q ss_pred Eeeccccccc
Q 008042 419 VKPYREKSRL 428 (579)
Q Consensus 419 Vk~A~~K~k~ 428 (579)
|++|....++
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9988654443
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.63 E-value=3.2e-08 Score=95.78 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEE-EeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDV-RIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~V-rI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
....++||||| +..++|..|.+.|+.||.+... .|++| .++|||||.|++.|.+.+|++.||++.+++++|.|.
T Consensus 94 ~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 34579999999 7799999999999999998764 45554 789999999999999999999999999999999999
Q ss_pred eccccccch
Q 008042 421 PYREKSRLV 429 (579)
Q Consensus 421 ~A~~K~k~~ 429 (579)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 998776554
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.60 E-value=1.1e-07 Score=94.63 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCCHHHHHH----HhhcCCCEEEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 347 GSRQIYLTFPAESTFTEQDVSN----YFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~----~FsqFG~V~~VrI~~d-rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
.+.||||.|| ...+..++|++ +|++||+|.+|....- +.||=|||.|.+.+.|-.|+..|+|-.+.|+.++|.+
T Consensus 8 pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3449999999 78899999998 9999999999977654 7899999999999999999999999999999999999
Q ss_pred ccccccchhhh
Q 008042 422 YREKSRLVDRK 432 (579)
Q Consensus 422 A~~K~k~~~r~ 432 (579)
|+.+.....+.
T Consensus 87 A~s~sdii~~~ 97 (221)
T KOG4206|consen 87 AKSDSDIIAQA 97 (221)
T ss_pred ccCccchhhcc
Confidence 99988776553
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=7e-08 Score=103.58 Aligned_cols=148 Identities=20% Similarity=0.382 Sum_probs=104.6
Q ss_pred HHHhhccccccccccccccccccCCchhHHHHHHhhhccccccCCCCcchhhhccccccccccCCCCCC---C-CCCCCC
Q 008042 272 YYEKYGKTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSD---P-GGIVAG 347 (579)
Q Consensus 272 y~ek~G~~l~~~~~~~esqR~gk~Gys~~k~l~~lkN~ir~idr~~GQ~~vvl~ed~~k~~~~R~~r~d---~-~~~~~~ 347 (579)
.|..||++|.+..- ....|-.|| |..+..-. -.-..|+..+| ++..+...|++.-..+.. . ......
T Consensus 96 ~f~~~g~ilS~kv~---~~~~g~kg~-FV~f~~e~-~a~~ai~~~ng----~ll~~kki~vg~~~~~~er~~~~~~~~~~ 166 (369)
T KOG0123|consen 96 TFSEFGNILSCKVA---TDENGSKGY-FVQFESEE-SAKKAIEKLNG----MLLNGKKIYVGLFERKEEREAPLGEYKKR 166 (369)
T ss_pred HHHhhcCeeEEEEE---EcCCCceee-EEEeCCHH-HHHHHHHHhcC----cccCCCeeEEeeccchhhhcccccchhhh
Confidence 57889999987643 333445566 54432211 11123333344 334444445543222211 1 112334
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
...+||.+. ..+++++.|.++|++||+|..+.++.+ +++|||||.|.++++|..|++.|++....+..+.|.+++.
T Consensus 167 ~t~v~vk~~-~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 167 FTNVYVKNL-EEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred hhhhheecc-ccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 568999999 789999999999999999999999996 6899999999999999999999999999999999999988
Q ss_pred cccch
Q 008042 425 KSRLV 429 (579)
Q Consensus 425 K~k~~ 429 (579)
+.+..
T Consensus 246 k~e~~ 250 (369)
T KOG0123|consen 246 KSERE 250 (369)
T ss_pred chhhH
Confidence 55443
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=6.8e-08 Score=98.09 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
..+|....|||-.| +.++.+.+|-..|-.||.|++.+|-.| ++|.||||.|+++.+|+.||..|||..|+-+|++
T Consensus 280 reGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 280 REGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 45678899999999 889999999999999999999999876 8999999999999999999999999999999999
Q ss_pred Eeecccccc
Q 008042 419 VKPYREKSR 427 (579)
Q Consensus 419 Vk~A~~K~k 427 (579)
|..-++|..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 988776653
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-07 Score=99.04 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
.+.|+..-|||--| ..-+|++||.-+|+.||+|..|.|++| -+-.||||.|++.+++++|+-+|++..|+.|+|.
T Consensus 234 d~~PPeNVLFVCKL-NPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKL-NPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEec-CCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 55688899999999 778899999999999999999999998 3567999999999999999999999999999999
Q ss_pred Eeeccc
Q 008042 419 VKPYRE 424 (579)
Q Consensus 419 Vk~A~~ 424 (579)
|.+.+.
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 987654
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=2e-07 Score=94.75 Aligned_cols=88 Identities=16% Similarity=0.253 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCc-eEcC--eEE
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPH-FVCG--ARV 417 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~-~I~G--r~V 417 (579)
.+...|+||||-| ...-.||||+..|..||+|++|.+.++ .+||++||.|.+.-+|+.||..+++. .+-| ..+
T Consensus 15 rg~~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 3446789999999 788899999999999999999999985 79999999999999999999998763 3333 468
Q ss_pred EEeeccccccchhhh
Q 008042 418 LVKPYREKSRLVDRK 432 (579)
Q Consensus 418 ~Vk~A~~K~k~~~r~ 432 (579)
.||++...+++..|+
T Consensus 94 VVK~ADTdkER~lRR 108 (371)
T KOG0146|consen 94 VVKFADTDKERTLRR 108 (371)
T ss_pred EEEeccchHHHHHHH
Confidence 899987666665554
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.43 E-value=5.2e-07 Score=96.64 Aligned_cols=76 Identities=28% Similarity=0.314 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~Fs-qFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...|.+||+|+ ++++.-.+|+++|. +-|+|+.|.+..| +.||+|.|+|+++|.+++|++.||.+.+.||.|.||-
T Consensus 42 ~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 33567999999 89999999999996 5999999999997 8999999999999999999999999999999999985
Q ss_pred c
Q 008042 422 Y 422 (579)
Q Consensus 422 A 422 (579)
-
T Consensus 121 d 121 (608)
T KOG4212|consen 121 D 121 (608)
T ss_pred c
Confidence 3
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.40 E-value=5.5e-07 Score=88.74 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcC-CCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKF-GPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqF-G~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
....-+||+.+ +.-+.|..+..||.+| |.|..+++.+. .+||||||.|++++.|+-|.+.||+..+.|+.+.|.
T Consensus 47 ~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 34557899999 8889999999999998 88889988774 799999999999999999999999999999999997
Q ss_pred ecccc
Q 008042 421 PYREK 425 (579)
Q Consensus 421 ~A~~K 425 (579)
.--+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 75544
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=9.6e-07 Score=92.93 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
..+|||..+ ..+++|+||+..|+.||+|..|.+.++ .+||||||+|.+......|+..||-..++|.-++|..+.
T Consensus 210 fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 457999999 889999999999999999999999886 799999999999999999999999999999999997764
Q ss_pred c
Q 008042 424 E 424 (579)
Q Consensus 424 ~ 424 (579)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 3
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=98.18 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-------rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
+|||.|| .+++|.+++...|...|.|.++.|..- .+.|||||.|.+.++|+.|+..|+++.|+|+.|.|+.+
T Consensus 517 ~lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3999999 899999999999999999999999773 24499999999999999999999999999999999988
Q ss_pred c
Q 008042 423 R 423 (579)
Q Consensus 423 ~ 423 (579)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=1.1e-06 Score=96.65 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
.+.+||.+| ...+...||+++|++||+|+-.+|+.+ --|.|||||..+.+.|.++|+.|+...|.|+.|.|..++
T Consensus 405 gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 579999999 788888999999999999999999996 468999999999999999999999999999999998775
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=1.1e-06 Score=98.77 Aligned_cols=79 Identities=23% Similarity=0.419 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
..+|.|.|+ ++..+-.+|+.+|..||.|.+|+||.. .+||||||+|.++..|..|+..+...-+.||++.+.||.
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 569999999 899999999999999999999999983 679999999999999999999999999999999999998
Q ss_pred cccc
Q 008042 424 EKSR 427 (579)
Q Consensus 424 ~K~k 427 (579)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 74
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.17 E-value=3.9e-06 Score=91.34 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=66.4
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~----drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
.+|||++| +.++++.+|++.|.+||+|+..+|.. ++...||||+|.+.+.++.|+.+ +...|+|+++.|+--+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 46999999 89999999999999999999999866 34449999999999999999999 79999999999976544
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=6.5e-06 Score=92.64 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEE
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARV 417 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-------rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V 417 (579)
.|.++.+||+|| +..++|+.|-..|+.||+|..|+|+.- +.+-+|||.|-+..+|++|++.|++.++.++.+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 466889999999 889999999999999999999999882 678999999999999999999999999999999
Q ss_pred EEeecc
Q 008042 418 LVKPYR 423 (579)
Q Consensus 418 ~Vk~A~ 423 (579)
++.|.+
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999984
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=8.9e-07 Score=88.05 Aligned_cols=78 Identities=22% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
.+..+||||+|+ ...++||-|.++|-+-|+|..|.|+.+ ...-||||.|.++-.+..|++.||+..+.++.+.|++-
T Consensus 6 ae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 355789999999 899999999999999999999999885 33339999999999999999999999999999999875
Q ss_pred c
Q 008042 423 R 423 (579)
Q Consensus 423 ~ 423 (579)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=3.8e-06 Score=84.06 Aligned_cols=71 Identities=25% Similarity=0.480 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
.++|||++ ++.+.+.+|..+|..||.|.+|.+ +.|||||.|++.-+|..|+-.+|+.+|+|.++.|.++..
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 46899999 899999999999999999999988 679999999999999999999999999999988888774
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.01 E-value=1e-05 Score=87.06 Aligned_cols=73 Identities=22% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
+..++|||.|| ++++|-..|++-|.+||.|..+.|+.. +++| .|.|.++++|+.|+..||+..++||.|+|.+
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999 899999999999999999999999663 6676 8999999999999999999999999999975
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.84 E-value=4.9e-05 Score=77.51 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
....+|+|.|| ++.++++||+++|.+||.+..+-|-+| ++.|.|=|+|...++|..|++.+++.-++|+.+++...
T Consensus 81 ~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44579999999 899999999999999999999999887 77899999999999999999999999999999988765
Q ss_pred cc
Q 008042 423 RE 424 (579)
Q Consensus 423 ~~ 424 (579)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 43
No 80
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.84 E-value=4.6e-05 Score=82.85 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
...+.+-+.-.+..--|-++|..+|.+||+|+.|.|-+ .---|.|||.+..+|-.|... .+..|+||.|+|.|..+-
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEEEecCC
Confidence 33444444444233447799999999999999998866 444699999999999888777 889999999999998874
Q ss_pred c
Q 008042 426 S 426 (579)
Q Consensus 426 ~ 426 (579)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.75 E-value=3.3e-05 Score=78.34 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...+.+|||++ ++.+|-+++..+|+.||.|..|.|++| +.|||+||.|.+.+.++.|+. ||+..|.|+.+.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45678999999 898888889999999999999999997 579999999999999999999 799999999999987
Q ss_pred cccc
Q 008042 422 YREK 425 (579)
Q Consensus 422 A~~K 425 (579)
.+-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6544
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.66 E-value=3.7e-05 Score=78.11 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
..-+||-|.| .-+++++.|.+.|.+|=.-...++++| +++|||||.|.+..++..|+.+||+..++.|.|+....
T Consensus 189 ~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3459999999 788999999999999999999999997 89999999999999999999999999999999987654
Q ss_pred ccc
Q 008042 423 REK 425 (579)
Q Consensus 423 ~~K 425 (579)
..|
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 433
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=4.4e-05 Score=84.34 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
......++|+|-+| +.++++++|+..|+.||+|..|+.-. .++|-.||.|-|.-+|++|++.+++..|.|++++
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34566889999999 89999999999999999999988755 3899999999999999999999999999999998
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.46 E-value=0.00045 Score=74.28 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
+..|.|.+|....+|.+-|-.+|+-||.|.+|+|.+.+ +--|.|.|.+...|+.|++.++++.|.|++|+|...+-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 67899999988999999999999999999999999964 478999999999999999999999999999999887643
No 85
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.45 E-value=2.7e-05 Score=53.32 Aligned_cols=23 Identities=43% Similarity=1.246 Sum_probs=18.2
Q ss_pred ccccccccc-ccCCCCCCCccCCC
Q 008042 192 VKVCHYFNK-GFCKHGNNCRYFHG 214 (579)
Q Consensus 192 ~kpC~YFar-G~Ck~GssCrF~Hg 214 (579)
-++|.+|.+ |.|++|++|+|.|+
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSS
T ss_pred cccChhhccCCccCCCCCcCccCC
Confidence 468999988 99999999999997
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.27 E-value=0.0011 Score=66.73 Aligned_cols=86 Identities=13% Similarity=0.206 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec-CC----CCceEEEEECCHHHHHHHHHhCCCceE---cCeEE
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC-QQ----KRMFGFVTFVFAETVKQILAKGNPHFV---CGARV 417 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~-dr----sRGfGFVtF~~~E~A~~Al~~mn~~~I---~Gr~V 417 (579)
...|||||.+| +.++.-.+|..+|..|---+...|-+ ++ .+-+|||+|.+...|.+|+..+||..+ ++..+
T Consensus 32 ~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34789999999 89999999999999987666665543 22 246999999999999999999999988 57889
Q ss_pred EEeeccccccchhhh
Q 008042 418 LVKPYREKSRLVDRK 432 (579)
Q Consensus 418 ~Vk~A~~K~k~~~r~ 432 (579)
++..|+...|+..++
T Consensus 111 hiElAKSNtK~kr~k 125 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRK 125 (284)
T ss_pred EeeehhcCcccccCC
Confidence 999988776655443
No 87
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.17 E-value=0.0011 Score=70.16 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEE--------EEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~--------VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~ 416 (579)
+..|||.|| +.++|-+++.++|+++|-|.. |+|-++ +-+|=|.++|-..|++..|+..|++..+.|+.
T Consensus 134 Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 556999999 899999999999999998764 344443 67999999999999999999999999999999
Q ss_pred EEEeecc
Q 008042 417 VLVKPYR 423 (579)
Q Consensus 417 V~Vk~A~ 423 (579)
|+|..|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9998876
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.10 E-value=0.0016 Score=71.52 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
+...-|-+.+| +|++|++||.+||+-++ |+.+.+++. +..|=|||+|.++|++++|+++ +...+..|-|.|..+.
T Consensus 8 ~~~~~vr~rGL-Pwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGL-PWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCC-CccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34456777899 99999999999999995 888888884 8899999999999999999999 8999999999998875
Q ss_pred cc
Q 008042 424 EK 425 (579)
Q Consensus 424 ~K 425 (579)
.+
T Consensus 85 ~~ 86 (510)
T KOG4211|consen 85 GA 86 (510)
T ss_pred Cc
Confidence 44
No 89
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.98 E-value=0.00039 Score=46.64 Aligned_cols=22 Identities=32% Similarity=1.234 Sum_probs=20.5
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008042 193 KVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 193 kpC~YFarG~Ck~GssCrF~Hg 214 (579)
.+|.+|..|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999996
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.95 E-value=0.0039 Score=55.44 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=63.8
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhc--CCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEc----CeEEE
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVC----GARVL 418 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~Fsq--FG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~----Gr~V~ 418 (579)
.||-|.|+ |...|.++|.+++.. .|...-+.+|.| -..|||||.|.+++.|.+-.+..+++.+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 48899999 788999999988865 577788888887 46999999999999999999999988775 55677
Q ss_pred Eeeccccc
Q 008042 419 VKPYREKS 426 (579)
Q Consensus 419 Vk~A~~K~ 426 (579)
|.+|+-.+
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 77775443
No 91
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.81 E-value=0.0033 Score=49.71 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHH
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQIL 404 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al 404 (579)
+.|-|.+. +.. ..+.+..+|.+||+|+++.+.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf-~~~-~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPD-LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-Cch-HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 46778777 333 4577888999999999999974 6779999999999999985
No 92
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.75 E-value=0.0012 Score=71.51 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=79.6
Q ss_pred cccccccccccCCchhHHHHHHhhhccccccCCCCcchhhhcccc-------ccccccCCCCCCCCCCCCCCcEEEEcCC
Q 008042 284 GYLTESQRHGKAGYSLTKLLARLKNSIRLIDRPHGQHSVILAEDV-------PKYLEYSGEKSDPGGIVAGSRQIYLTFP 356 (579)
Q Consensus 284 ~~~~esqR~gk~Gys~~k~l~~lkN~ir~idr~~GQ~~vvl~ed~-------~k~~~~R~~r~d~~~~~~~~rtIyVg~L 356 (579)
.++.+--|.-+.||-.+++++.. .+|+.+-|-+.+-+.+|.... .|=+.+-..-.++....-..++|.+.+|
T Consensus 161 ~fLlkhvrrnkeGyVpv~~vaSF-KKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenL 239 (484)
T KOG1855|consen 161 AFLLKHVRRNKEGYVPVKLVASF-KKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENL 239 (484)
T ss_pred HHHHHHHhcCCCCceeeehhhhH-HHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecC
Confidence 34444456667899766666655 344444444333332332211 1111111111222233346899999999
Q ss_pred CCCCCCHHHHHHHhhcCCCEEEEEeec------C-----------CCCceEEEEECCHHHHHHHHHhCCC
Q 008042 357 AESTFTEQDVSNYFSKFGPVQDVRIPC------Q-----------QKRMFGFVTFVFAETVKQILAKGNP 409 (579)
Q Consensus 357 ~~~~~tEedLr~~FsqFG~V~~VrI~~------d-----------rsRGfGFVtF~~~E~A~~Al~~mn~ 409 (579)
+.+-.-+.|.++|+.+|.|..|+|.. + +.+-+|+|+|+..+.|.+|.+.||.
T Consensus 240 -P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 240 -PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred -CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 66666799999999999999999966 1 1366799999999999999999854
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.71 E-value=0.00076 Score=74.72 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
.+|+|+-.+ .-..++-+|.++|+.+|+|.+|+|+.| +++|.|||.|.+.+.+..|+.- .|+-+.|..|.|....
T Consensus 179 ~Rtvf~~ql-a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQL-ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHH-hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 568999888 578999999999999999999999998 7899999999999999999965 9999999999998754
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.0011 Score=66.75 Aligned_cols=69 Identities=26% Similarity=0.304 Sum_probs=61.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...+.|.++ ...+...+|.++|..||++..+.+ .++++||.|...++|..|++.+++..+.|+.|.|..
T Consensus 99 ~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 457888888 677888999999999999966655 578999999999999999999999999999999943
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.54 E-value=0.0031 Score=56.59 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=37.3
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCC
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn 408 (579)
-|.|.++ ...++.++|++.|++||+|..|.+.. .---|+|-|.+.+.|++|++.+.
T Consensus 3 il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHH
Confidence 3667777 67788999999999999999999987 55579999999999999999863
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.48 E-value=0.0016 Score=67.99 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=71.4
Q ss_pred CCcEEE-EcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 347 GSRQIY-LTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 347 ~~rtIy-Vg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
...++| |+++ ++.+++++|+.+|..+|.|..++++.+ ..+|||+|.|.....+..++.. ..+.+.++.+.+..
T Consensus 183 ~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 183 PSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred ccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 345677 9999 999999999999999999999999885 7899999999999999999998 88999999999988
Q ss_pred ccccccc
Q 008042 422 YREKSRL 428 (579)
Q Consensus 422 A~~K~k~ 428 (579)
..++.+.
T Consensus 261 ~~~~~~~ 267 (285)
T KOG4210|consen 261 DEPRPKS 267 (285)
T ss_pred CCCCccc
Confidence 7776554
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.47 E-value=0.0062 Score=64.38 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=60.4
Q ss_pred CcEEEEcCCCCCCCCHH---HH--HHHhhcCCCEEEEEeecC-----CCCc-eE-EEEECCHHHHHHHHHhCCCceEcCe
Q 008042 348 SRQIYLTFPAESTFTEQ---DV--SNYFSKFGPVQDVRIPCQ-----QKRM-FG-FVTFVFAETVKQILAKGNPHFVCGA 415 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEe---dL--r~~FsqFG~V~~VrI~~d-----rsRG-fG-FVtF~~~E~A~~Al~~mn~~~I~Gr 415 (579)
..-+||-+|++.-..|+ -| .+||+|||+|..|-|-+. ---+ +| ||||...|+|.+++.+.++..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999955555555 33 389999999999977552 0112 33 9999999999999999999999999
Q ss_pred EEEEeecccc
Q 008042 416 RVLVKPYREK 425 (579)
Q Consensus 416 ~V~Vk~A~~K 425 (579)
.|+..+...|
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9998765433
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.47 E-value=0.019 Score=61.09 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=69.7
Q ss_pred cccCCCCCCCCCCCCCCcEEEEcCCCC---CCCC-------HHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHH
Q 008042 332 LEYSGEKSDPGGIVAGSRQIYLTFPAE---STFT-------EQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVK 401 (579)
Q Consensus 332 ~~~R~~r~d~~~~~~~~rtIyVg~L~~---~~~t-------EedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~ 401 (579)
.+.+.++ +........++|.+.|+-. +..+ .++|++--++||+|..|.|--....|.+-|+|.+.+.|.
T Consensus 250 ~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 250 LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEAD 328 (382)
T ss_pred cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHH
Confidence 4445555 3334456678999988711 1233 356667789999999995543357999999999999999
Q ss_pred HHHHhCCCceEcCeEEEEeecccc
Q 008042 402 QILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 402 ~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
.++..|+|..++||.|....+--+
T Consensus 329 ~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 329 QCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHhcCeeecceEEEEEEeCCc
Confidence 999999999999999988765443
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.47 E-value=0.0081 Score=66.15 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEE-EEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~-VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
....|-+.+| ++.+||+||.+||+--=.|.+ +.++.| ++-|=|||.|++.|.|++|+.. +...|..|=|+|..+
T Consensus 102 ~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3457888999 899999999999998766666 334544 7788999999999999999999 889999999999765
Q ss_pred c
Q 008042 423 R 423 (579)
Q Consensus 423 ~ 423 (579)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.34 E-value=0.0055 Score=68.32 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=121.7
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...+|||++| +..+++.++++....||++...+++.| -++||+|..|.+......|++.+|+..+.++++.|..|
T Consensus 288 ~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4569999999 889999999999999999999999886 68999999999999999999999999999999999988
Q ss_pred cccccchhhhhhhhhcCCCCCCCCCCCCcc---cccccccc------cCcHHHHhhhHHHHHHHHHHHHHHHHhhhcccC
Q 008042 423 REKSRLVDRKYVEKMQHPMFCSLHFTDGDT---ELHTMPRA------CNNSRLLRKQLMEEHEQAIELERRRLSEMQLAC 493 (579)
Q Consensus 423 ~~K~k~~~r~~~~~~~~~~~~~p~~~~~D~---~l~~~~r~------~~ne~mlrrq~~Ee~~q~lE~qrr~l~~~q~~~ 493 (579)
..-......-.. .....+...+. .....+.. +-.+..|+ ..++-+.-+|.-|.+..+--...
T Consensus 367 ~~g~~~~~~~~~-------~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLk--dd~EyeeIlEdvr~ec~k~g~v~ 437 (500)
T KOG0120|consen 367 IVGASNANVNFN-------ISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELK--DDEEYEEILEDVRTECAKFGAVR 437 (500)
T ss_pred hccchhccccCC-------ccccccccchhhhcccCCCcchhhhhhhcCCHHHhc--chHHHHHHHHHHHHHhcccCcee
Confidence 765433221111 00000111111 00000100 12222233 44556678888888777655543
Q ss_pred C-CCCCCCCCCCCcccccccCCCCCCCCCCchhhhhhhhhhccCCCCCccccccccCCCCcccc
Q 008042 494 K-PMNHHSYFGYSMDELQVSEAPAEQGDFPSAERFNYLLDVLNNGSTSEDQVSHISTHYNDQDS 556 (579)
Q Consensus 494 k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~d~d~ 556 (579)
+ -++++.+++.+.-+ ..-=..+|-+++.+.+++..| +|=-... +-|-+.|-|.|+
T Consensus 438 ~v~ipr~~~~~~~~~G-----~GkVFVefas~ed~qrA~~~L-~GrKF~n--RtVvtsYydeDk 493 (500)
T KOG0120|consen 438 SVEIPRPYPDENPVPG-----TGKVFVEFADTEDSQRAMEEL-TGRKFAN--RTVVASYYDEDK 493 (500)
T ss_pred EEecCCCCCCCCcCCC-----cccEEEEecChHHHHHHHHHc-cCceeCC--cEEEEEecCHHH
Confidence 2 22333233323222 223456777888888899887 4322222 234456666654
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.29 E-value=0.015 Score=50.69 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCCCHHHHH----HHhhcCC-CEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 349 RQIYLTFPAESTFTEQDVS----NYFSKFG-PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr----~~FsqFG-~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
..|||.|| +.+.+-..|+ .++..+| +|.+| ..+-|+|.|.+.+.|.+|.+.|++-.+.|++|.|.+..
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999 6666666655 4455654 88887 57899999999999999999999999999999998864
Q ss_pred c
Q 008042 424 E 424 (579)
Q Consensus 424 ~ 424 (579)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.20 E-value=0.019 Score=51.29 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=51.0
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEE-------------eecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeE
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVR-------------IPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 416 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~Vr-------------I~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~ 416 (579)
-|.|=+. +. -....|-++|++||.|.+.. ++. ...+--|+|+++.+|++||.+ ||..|.|..
T Consensus 8 wVtVFGf-p~-~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 8 WVTVFGF-PP-SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp EEEEE----G-GGHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred EEEEEcc-CH-HHHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3555555 22 26788899999999999885 343 678899999999999999999 999999864
Q ss_pred -EEEeecc
Q 008042 417 -VLVKPYR 423 (579)
Q Consensus 417 -V~Vk~A~ 423 (579)
|-|++..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4566664
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.19 E-value=0.012 Score=65.72 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCEEEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 364 QDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 364 edLr~~FsqFG~V~~VrI~~d-------rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
|+|+.-+++||.|..|.|+++ -.-|--||+|.+.+++++|++.|+|..+.||.|...++-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 455666789999999999885 3456679999999999999999999999999998887653
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.028 Score=62.35 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceE----cC
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV----CG 414 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~Fs-qFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I----~G 414 (579)
.....+|||||+| +.-+|.++|-.+|. -||-|.-|-|=.| ..+|-|=|||.+..+--+||++ -...| -.
T Consensus 366 ~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa-rFvql~h~d~~ 443 (520)
T KOG0129|consen 366 PIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA-RFVQLDHTDID 443 (520)
T ss_pred ccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-heEEEeccccc
Confidence 3456789999999 78899999999999 7999999999776 4699999999999999999997 33333 34
Q ss_pred eEEEEeecc
Q 008042 415 ARVLVKPYR 423 (579)
Q Consensus 415 r~V~Vk~A~ 423 (579)
++|.|++|.
T Consensus 444 KRVEIkPYv 452 (520)
T KOG0129|consen 444 KRVEIKPYV 452 (520)
T ss_pred eeeeeccee
Confidence 688999887
No 105
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.91 E-value=0.0041 Score=39.43 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=17.0
Q ss_pred cccccccccCCCCCCCccCCC
Q 008042 194 VCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 194 pC~YFarG~Ck~GssCrF~Hg 214 (579)
||+||.. |++|.+|.|.|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 6998877 999999999993
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.83 E-value=0.034 Score=56.07 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=66.9
Q ss_pred CCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEc-CeEEEEee
Q 008042 343 GIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC-GARVLVKP 421 (579)
Q Consensus 343 ~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~-Gr~V~Vk~ 421 (579)
...++...+|+.++ +..++.+.+..+|.+|.--.+|+++.. .++.|||+|.+...|..|...+.+-.|- ...+.|..
T Consensus 141 ~~~ppn~ilf~~ni-P~es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 141 QMAPPNNILFLTNI-PSESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred cCCCCceEEEEecC-CcchhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 34577889999999 788999999999999999999999774 5789999999999999999988776664 66777776
Q ss_pred cc
Q 008042 422 YR 423 (579)
Q Consensus 422 A~ 423 (579)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 54
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.021 Score=63.26 Aligned_cols=59 Identities=24% Similarity=0.404 Sum_probs=49.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-------CCCc---eEEEEECCHHHHHHHHHh
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRM---FGFVTFVFAETVKQILAK 406 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-------rsRG---fGFVtF~~~E~A~~Al~~ 406 (579)
.-+++||||+| +++++|+.|...|.+||.|. |..+.. ..+| |.|+.|+++..+++.+..
T Consensus 257 ~~S~KVFvGGl-p~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 257 RYSRKVFVGGL-PWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccceeecCC-CccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 44789999999 99999999999999999864 445521 4577 999999999999987776
No 108
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.64 E-value=0.0044 Score=66.77 Aligned_cols=27 Identities=41% Similarity=1.045 Sum_probs=24.7
Q ss_pred CcccccccccccCCCCCCCccCCCCCC
Q 008042 191 PVKVCHYFNKGFCKHGNNCRYFHGHPM 217 (579)
Q Consensus 191 ~~kpC~YFarG~Ck~GssCrF~Hg~~~ 217 (579)
..|||.||-.|.|+.|.+|||.||..+
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hhccchHhhccccccCcccccccCccc
Confidence 589999999999999999999999544
No 109
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.48 E-value=0.017 Score=61.47 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEE--------EEeecC----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD--------VRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~--------VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I 412 (579)
....-+|||-++ +..+++.++.++|.++|.|.. |.|-+| +.||=|-|+|+++-.|+.|++-.++..+
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 455679999999 788999999999999998753 223233 6899999999999999999999999999
Q ss_pred cCeEEEEeeccccccc
Q 008042 413 CGARVLVKPYREKSRL 428 (579)
Q Consensus 413 ~Gr~V~Vk~A~~K~k~ 428 (579)
+|..|+|..|..+..+
T Consensus 142 ~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTGV 157 (351)
T ss_pred cCCCchhhhhhhccCc
Confidence 9999999998877643
No 110
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.39 E-value=0.016 Score=47.86 Aligned_cols=51 Identities=33% Similarity=0.531 Sum_probs=38.8
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHHh
Q 008042 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMKL 61 (579)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~l 61 (579)
.-+|.+|++++|+.|.||-|+||= .+..|++.| +..+.+|.+-|.+|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~l-le~~~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHL-LESPELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHH-hcCHHHHHHHHHHHHHHH
Confidence 358999999999999999999985 455777777 455666667777765433
No 111
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.37 E-value=0.01 Score=50.06 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=40.4
Q ss_pred HHHHHhhhhcCCCchhhhhhhhhcccCCcchhHhhccCChHHHHHHHHHHHHH
Q 008042 8 KAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60 (579)
Q Consensus 8 ~~v~~riq~~~pe~a~ki~g~ll~qd~~e~~mirla~gpd~~~~~~i~~ak~~ 60 (579)
..+|.+|++++|++|.||-|+||= .+..|++.|=-.| .+|+.-|.+|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLLe--~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLLE--MDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT--SCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHhc--CCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 468999999999999999999984 5677888886554 6777888877653
No 112
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.03 E-value=0.025 Score=57.15 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceE
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV 412 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I 412 (579)
....|+||.|| ..++||++|+.+|+.|--...++|--......|||.|++.+.|..|+..+.|..|
T Consensus 208 ~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44669999999 8999999999999999877777775433455789999888888888888766554
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.00 E-value=0.1 Score=49.69 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=55.0
Q ss_pred CCCCCCCcEEEEcCCC-----CCCCCH---HHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEc
Q 008042 342 GGIVAGSRQIYLTFPA-----ESTFTE---QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVC 413 (579)
Q Consensus 342 ~~~~~~~rtIyVg~L~-----~~~~tE---edLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~ 413 (579)
+..+|+..||.|.-.. ...+.+ .+|-+.|.+||+|.=||.+- +-=+|||.+-+.|-+|+.. ++..|+
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~ 95 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVN 95 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEET
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEEC
Confidence 4678888899887772 123443 36677899999999998875 3579999999999999998 999999
Q ss_pred CeEEEEeecc
Q 008042 414 GARVLVKPYR 423 (579)
Q Consensus 414 Gr~V~Vk~A~ 423 (579)
|+.|+|+.-.
T Consensus 96 g~~l~i~LKt 105 (146)
T PF08952_consen 96 GRTLKIRLKT 105 (146)
T ss_dssp TEEEEEEE--
T ss_pred CEEEEEEeCC
Confidence 9999998643
No 114
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.91 E-value=0.023 Score=60.42 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=60.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCC--EEEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGP--VQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~--V~~VrI~~----drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
-+||||| -|.+|++||-+....-|- +.+++... +++||||.|...+...+++.++.+....|.|..-.|-.+.
T Consensus 82 ~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 6899999 899999999999887773 33333333 3899999999999999999999999999999887776554
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.75 E-value=0.018 Score=59.15 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---------CCCc-----e--EEEEECCHHHHHHHHHhCCCc
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---------QKRM-----F--GFVTFVFAETVKQILAKGNPH 410 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---------rsRG-----f--GFVtF~~~E~A~~Al~~mn~~ 410 (579)
...-||+++| +..+.-..||++|++||.|-.|.+..- +.+| | |+|.|.+-..|+.+.+.||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3457999999 788999999999999999999999662 1111 2 899999999999999999999
Q ss_pred eEcCeE
Q 008042 411 FVCGAR 416 (579)
Q Consensus 411 ~I~Gr~ 416 (579)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 116
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.71 E-value=0.038 Score=61.96 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=57.1
Q ss_pred cEEEEcCCCCCCCCH-------HHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEc-CeEE
Q 008042 349 RQIYLTFPAESTFTE-------QDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVC-GARV 417 (579)
Q Consensus 349 rtIyVg~L~~~~~tE-------edLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~-Gr~V 417 (579)
.-|+|.|+ + .+-+ .-|.+.|+++|+|+.+.+|.+ ..+||.|+.|.+..+|+.|++.+||+.|+ +.+.
T Consensus 59 ~vVvv~g~-P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGA-P-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCC-c-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 35666666 2 2222 345678999999999999975 78999999999999999999999998774 5667
Q ss_pred EEeecc
Q 008042 418 LVKPYR 423 (579)
Q Consensus 418 ~Vk~A~ 423 (579)
.|...+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 776543
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.52 E-value=0.14 Score=55.08 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecccc
Q 008042 346 AGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYREK 425 (579)
Q Consensus 346 ~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~K 425 (579)
....-+-|-+|....++-+.|-++|..||.|++|+.++- +-|-|.|+..+...+++|+..||+..+-|.+|.|+..+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 345678888995567888999999999999999999883 6889999999999999999999999999999999986543
No 118
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.95 E-value=0.13 Score=55.92 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEeecc
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYR 423 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr-~V~Vk~A~ 423 (579)
.|++.++.+.++ +.+++||++++.|.+-|-+.+...-..+.|-++.+.+.+.|.|-.|+..|+.|.+.+. -++|.+.+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 467789999999 8899999999999999988888776667888999999999999999999999999766 78888765
No 119
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.92 E-value=0.025 Score=59.59 Aligned_cols=27 Identities=48% Similarity=1.249 Sum_probs=25.0
Q ss_pred CCCCccccccccc-ccCCCCCCCccCCC
Q 008042 188 PEFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (579)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~GssCrF~Hg 214 (579)
....-++|.+|.+ |+||.|..|+|.|+
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~ 200 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHG 200 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCC
Confidence 4667899999999 99999999999999
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.83 E-value=0.07 Score=61.14 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEE-EEeec---CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQD-VRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~-VrI~~---drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
.....-|||..| +..+++.++-++|..--.|++ |.|.+ ++-++-|||.|..++++.+|+..-..+.+..|.|+|.
T Consensus 431 ~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344669999999 899999999999999888888 66544 5889999999999988888888778899999999997
Q ss_pred eccccc
Q 008042 421 PYREKS 426 (579)
Q Consensus 421 ~A~~K~ 426 (579)
...++.
T Consensus 510 si~~~~ 515 (944)
T KOG4307|consen 510 SIADYA 515 (944)
T ss_pred chhhHH
Confidence 655443
No 121
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.50 E-value=0.033 Score=57.17 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=49.8
Q ss_pred HHHHHHhh-cCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 364 QDVSNYFS-KFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 364 edLr~~Fs-qFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
++|-..|+ +||+|+++.|-.+ .-+|=.+|.|..+|+|++|++.+|+..+.|+.|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 9999999977653 56889999999999999999999999999999988654
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.13 E-value=0.21 Score=52.36 Aligned_cols=61 Identities=23% Similarity=0.234 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCCEEEEEeecC-----CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeecc
Q 008042 363 EQDVSNYFSKFGPVQDVRIPCQ-----QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYR 423 (579)
Q Consensus 363 EedLr~~FsqFG~V~~VrI~~d-----rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~ 423 (579)
|+++++-.++||.|..|-|..+ .-----||.|...+.|-+|+-.|||.+++||.|..+++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5678888999999999977553 112237999999999999999999999999999988875
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.92 E-value=0.21 Score=58.83 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEee
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKP 421 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~G--r~V~Vk~ 421 (579)
....++.++||+| .....-..|...|..||+|..|.+-. .--|++|.|++...++.|+..|-+..|.| +++.|.+
T Consensus 451 kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3455789999999 56678899999999999999987755 66799999999999999999998888865 7799998
Q ss_pred ccccccchhh
Q 008042 422 YREKSRLVDR 431 (579)
Q Consensus 422 A~~K~k~~~r 431 (579)
+.+-......
T Consensus 528 a~~~~~~Pqq 537 (975)
T KOG0112|consen 528 ASPPGATPQQ 537 (975)
T ss_pred ccCCCCChhh
Confidence 8876655443
No 124
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.89 E-value=0.14 Score=53.24 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCCCcEEEEcCCCC-C----------CCCHHHHHHHhhcCCCEEEEEeec
Q 008042 345 VAGSRQIYLTFPAE-S----------TFTEQDVSNYFSKFGPVQDVRIPC 383 (579)
Q Consensus 345 ~~~~rtIyVg~L~~-~----------~~tEedLr~~FsqFG~V~~VrI~~ 383 (579)
+....|||+.++|- | --+|+-|+..|..||.|..|.||.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34456899988832 1 146889999999999999999976
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.90 E-value=0.51 Score=51.28 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC-------CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ-------QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d-------rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
.-|-|.|| ...+|.++++.+|+-.|+|.+++|... -..-.+||.|.+...|..|--. -+..+-++-+.|-+
T Consensus 8 ~vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRP 85 (479)
T ss_pred ceeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEe
Confidence 37899999 888999999999999999999998762 2344899999999988877555 44445566666766
Q ss_pred ccc
Q 008042 422 YRE 424 (579)
Q Consensus 422 A~~ 424 (579)
|..
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 653
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=89.39 E-value=1.1 Score=51.87 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=62.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEE-EEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQ-DVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~-~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
.+-|-+.|. +++++-+||-+||.-|-.+- +|+|-++ .--|=+-|.|++.+.|.+|...++++.|.+|.|++.
T Consensus 867 p~V~~~~n~-Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNF-PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCC-CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 457788899 89999999999999998766 4555442 567889999999999999999999999999999875
No 127
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.08 E-value=1.8 Score=35.74 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcC---CCEEEEEeecCCCCceEEEEECCHHHHHHHHHhC
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKF---GPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKG 407 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqF---G~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~m 407 (579)
..+|+|.|+ .+++.+|++.||..| .....|..+-|. -+=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv--d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV--DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC--CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 457999999 568999999999999 134467777653 2567899999999999864
No 128
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.07 E-value=1.1 Score=44.18 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=47.6
Q ss_pred CHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEEEeecccc
Q 008042 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVLVKPYREK 425 (579)
Q Consensus 362 tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn--~~~I~Gr~V~Vk~A~~K 425 (579)
....|+++|..|+++....+.+ +-+=..|.|.+.+.|.+|...++ +..+.|..++|.+++.-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4588999999999999988877 65668999999999999999998 89999999999988543
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.02 E-value=0.36 Score=52.89 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=61.9
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCC-ceEcCeEEEEeecccccc
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNP-HFVCGARVLVKPYREKSR 427 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~-~~I~Gr~V~Vk~A~~K~k 427 (579)
.++|+||| ...++..||+..|..----..=..+ -+-||+||.+.+..-|.+|++.+++ ..+.|+++.|....+|..
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 47899999 8899999999999754100000111 2688999999999999999999876 578999999998887765
Q ss_pred chhh
Q 008042 428 LVDR 431 (579)
Q Consensus 428 ~~~r 431 (579)
+..+
T Consensus 79 rsrk 82 (584)
T KOG2193|consen 79 RSRK 82 (584)
T ss_pred Hhhh
Confidence 5544
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=88.42 E-value=0.26 Score=53.39 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=53.5
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcC----CCEEEEEee-c--CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKF----GPVQDVRIP-C--QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqF----G~V~~VrI~-~--drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
-|-..+| +++.|+.|+.+||..- |-++.|-.+ + ++--|=|||.|..+++|++||.+ +...|+-|-|.+.+.
T Consensus 163 ivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 3455789 8999999999999732 233333333 3 37889999999999999999999 777777776766543
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.40 E-value=0.98 Score=47.75 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=52.2
Q ss_pred CHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeE-EEEeeccccc
Q 008042 362 TEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR-VLVKPYREKS 426 (579)
Q Consensus 362 tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~-V~Vk~A~~K~ 426 (579)
.-.-|-..|++||+|++.... +.-.+=.|.|...-.|++||.+ |+.+|+|.. |-|++...|.
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 456788999999999998665 3777999999999999999999 999998864 5677766654
No 132
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.31 E-value=0.17 Score=54.51 Aligned_cols=22 Identities=45% Similarity=1.147 Sum_probs=21.3
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008042 193 KVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 193 kpC~YFarG~Ck~GssCrF~Hg 214 (579)
.+|+||.+|+|+.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999997
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.74 E-value=2.2 Score=40.93 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHH---HhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEe
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSN---YFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVK 420 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~---~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk 420 (579)
..++..||.|.-|...--..+|++. ..+.||+|.+|.+. .|.-|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4577889999888322233466654 46889999999765 577899999999999999998544 5567778887
Q ss_pred ec
Q 008042 421 PY 422 (579)
Q Consensus 421 ~A 422 (579)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 74
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.07 E-value=0.15 Score=59.92 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=65.7
Q ss_pred CCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec---CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 345 VAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~---drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
.-.++|||+|++ +..+++.+++..|..+|.|++|.|-. .+---||||.|.+...+-.|+..+-+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 455789999999 89999999999999999999998844 23455899999999999999999888777666666665
Q ss_pred ccc
Q 008042 422 YRE 424 (579)
Q Consensus 422 A~~ 424 (579)
..+
T Consensus 448 G~~ 450 (975)
T KOG0112|consen 448 GQP 450 (975)
T ss_pred ccc
Confidence 544
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.98 E-value=0.26 Score=52.47 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=59.1
Q ss_pred cEEEEcCCCCCCCCHHHHH--HHhhcCCCEEEEEeecCC----C---CceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008042 349 RQIYLTFPAESTFTEQDVS--NYFSKFGPVQDVRIPCQQ----K---RMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr--~~FsqFG~V~~VrI~~dr----s---RGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~V 419 (579)
+.+||-+|+.....|..|+ ++|++||.|..|.+-.+. + ---++|||...|+|..||...++..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4567777744455666665 799999999999887652 1 112799999999999999999999999998776
Q ss_pred eecccc
Q 008042 420 KPYREK 425 (579)
Q Consensus 420 k~A~~K 425 (579)
.....|
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 665544
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.95 E-value=0.081 Score=61.77 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=60.9
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~----drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
.++||.+| +..+.+++|+..|+.+|.|..|+|.. ++-||+|+|.|..++.+.+|+.....+.+....|-|.-
T Consensus 668 ~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 668 IKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 38999999 88999999999999999999998862 47899999999999999999999666666644444443
No 137
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=86.91 E-value=3 Score=41.63 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=56.8
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceE--cCeEEEEee
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV--CGARVLVKP 421 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I--~Gr~V~Vk~ 421 (579)
++.|.+| +.+-+-.||+++..+-|.|--..+.+ -|+|.|.|...|+.+-|+.+++.+.+ .|....+..
T Consensus 117 RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 117 RVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eEEEecC-CCCCchHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 8999999 77889999999999999999888765 56999999999999999999876655 444444433
No 138
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=85.94 E-value=0.49 Score=53.17 Aligned_cols=35 Identities=37% Similarity=0.863 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCcccccccccccCCCCCCCccCCC
Q 008042 180 TSRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 180 ~~rrs~s~~~~~~kpC~YFarG~Ck~GssCrF~Hg 214 (579)
..||.+.-.--..-||-=|.||.|++|.+|.|.||
T Consensus 224 ARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 224 ARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred cccCCcccccccCccCcccccCCCCCCCccccccc
Confidence 34666665566778999999999999999999999
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=85.55 E-value=0.39 Score=56.36 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=66.6
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec---CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeeccc
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC---QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPYRE 424 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~---drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A~~ 424 (579)
...++|.|+ ++..|.+.++.+++.+|.+.+++++. ++.+|.+||.|.++.++.+++..++...+.-+.+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 568999999 89999999999999999999999877 37899999999999999999999888888777777765443
No 140
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=83.85 E-value=2.7 Score=45.75 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=60.2
Q ss_pred CcEEEEcCCC-CCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcC--eEEEEeeccc
Q 008042 348 SRQIYLTFPA-ESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCG--ARVLVKPYRE 424 (579)
Q Consensus 348 ~rtIyVg~L~-~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~G--r~V~Vk~A~~ 424 (579)
++-|.++-|. -+.+|-+-|..+-...|+|.+|-|.+. .---|.|+|++.+.|++|.+.||+..|.. -.++|.+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 3444444442 478999999999999999999988872 33458999999999999999999988854 3567777776
Q ss_pred c
Q 008042 425 K 425 (579)
Q Consensus 425 K 425 (579)
.
T Consensus 199 ~ 199 (494)
T KOG1456|consen 199 T 199 (494)
T ss_pred c
Confidence 4
No 141
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=83.58 E-value=1.3 Score=50.48 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=62.7
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhh-cCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceE---cCeEEEE
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSNYFS-KFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFV---CGARVLV 419 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~Fs-qFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I---~Gr~V~V 419 (579)
.++.++-|||.|| -.-||.-+|+.+.+ ..|.|++..| |+-|--+||+|.+.+.|......|++..+ +++.|.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4556789999999 77899999999999 6778888733 44566799999999999999999998876 5666666
Q ss_pred eecc
Q 008042 420 KPYR 423 (579)
Q Consensus 420 k~A~ 423 (579)
.+..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6544
No 142
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=82.81 E-value=1.2 Score=48.45 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=63.1
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEE---EEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEee
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQD---VRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKP 421 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~---VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~ 421 (579)
..-|-+.+| ++..+-||+-+||..|-.-++ |.|+.+ +.-|=|||.|.+.|.|..|..+-.++...+|-|.|..
T Consensus 280 kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457888999 899999999999999874332 666663 7789999999999999999999777888899999987
Q ss_pred cc
Q 008042 422 YR 423 (579)
Q Consensus 422 A~ 423 (579)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 143
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.48 E-value=0.68 Score=31.02 Aligned_cols=19 Identities=32% Similarity=0.952 Sum_probs=17.0
Q ss_pred cccccccc-cCCCCCCCccCC
Q 008042 194 VCHYFNKG-FCKHGNNCRYFH 213 (579)
Q Consensus 194 pC~YFarG-~Ck~GssCrF~H 213 (579)
.|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 59999998 9987 8999988
No 144
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.26 E-value=1.2 Score=46.22 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=60.2
Q ss_pred cEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCC----CceEcCeEEEEee
Q 008042 349 RQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGN----PHFVCGARVLVKP 421 (579)
Q Consensus 349 rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn----~~~I~Gr~V~Vk~ 421 (579)
.-|||.|| ...++.+.+..-|+.||+|+..-+..| +.-+=++|.|...-.|.+|+...+ +...+++.+.|.+
T Consensus 32 a~l~V~nl-~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNL-MQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEec-chhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999 788999999999999999998766554 667788999999999999988753 2455777777765
Q ss_pred cc
Q 008042 422 YR 423 (579)
Q Consensus 422 A~ 423 (579)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 145
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.89 E-value=3.2 Score=47.94 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=74.7
Q ss_pred CCCCcchhhhccccccccccCCCCCCCCCCCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEE
Q 008042 315 RPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTF 394 (579)
Q Consensus 315 r~~GQ~~vvl~ed~~k~~~~R~~r~d~~~~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF 394 (579)
.|.-++..|++..++ | ..+--.+....+...++|||++ ...+..+-++.+...+|-|..+.... |||..|
T Consensus 11 ~P~~~~~~~~~~~~p-~---~~p~qp~~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f 80 (668)
T KOG2253|consen 11 MPMMPQVPMVGNGVP-Y---VVPIQPVFQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEF 80 (668)
T ss_pred CCCCCCCccccCCcc-c---ccCCcccccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccch
Confidence 344444555555554 2 2222233445566779999999 78888889999999999998887655 999999
Q ss_pred CCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 395 VFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 395 ~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
..+.....|+..+....++|..+.++.-
T Consensus 81 ~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 81 LKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred hhHHHHHHHHHHhcccCCCcchhhccch
Confidence 9999999999999999999998888764
No 146
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=80.68 E-value=2.2 Score=34.90 Aligned_cols=68 Identities=32% Similarity=0.554 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhhcCCC--CccccccchhHHHhhccccccccccccccccccCCc-hhHHHHHHhhhccccccCCCCc
Q 008042 243 SLERLEAEITELLKQRRGF--PISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGY-SLTKLLARLKNSIRLIDRPHGQ 319 (579)
Q Consensus 243 sle~le~ei~ell~~r~~~--p~~~~~lp~~y~ek~G~~l~~~~~~~esqR~gk~Gy-s~~k~l~~lkN~ir~idr~~GQ 319 (579)
+++.+..+|.+++.+.++. .+....++..|...| ..+..+. =|| +|..++..+.+.+.+.++.+|+
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~~~----------yG~~~l~~ll~~~~~~~~i~~~~~g~ 70 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDPRD----------YGFSSLSELLESLPDVVEIEERQHGG 70 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--TCC----------TTSSSHHHHHHT-TTTEEEEEEECCC
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCccc----------cCCCcHHHHHHhCCCeEEEeeeCCCC
Confidence 3567888999999776643 677778888887777 5554322 266 6888887777888887887776
Q ss_pred ch
Q 008042 320 HS 321 (579)
Q Consensus 320 ~~ 321 (579)
+.
T Consensus 71 ~~ 72 (74)
T PF12872_consen 71 QV 72 (74)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 147
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=77.78 E-value=0.8 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCC-CccCCC
Q 008042 192 VKVCHYFNKGFCKHGNN-CRYFHG 214 (579)
Q Consensus 192 ~kpC~YFarG~Ck~Gss-CrF~Hg 214 (579)
.-+|.=|.||.|+||.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 57899999999999988 999996
No 148
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.52 E-value=6.6 Score=32.76 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHhhcCC-----CEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 359 STFTEQDVSNYFSKFG-----PVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 359 ~~~tEedLr~~FsqFG-----~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
..++..+|-.++..-+ .|-+|+| ...|.||.- ..+.|+.+++.+++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev-~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEV-PEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEE-CHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888888888765 4456666 456999985 456889999999999999999999875
No 149
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=75.51 E-value=12 Score=33.00 Aligned_cols=55 Identities=24% Similarity=0.385 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCC
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN 408 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn 408 (579)
..-.||+++ .+....||.++|+.||.|.=--| .-.-|||.....+.|..|+..+.
T Consensus 9 dHVFhltFP--keWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFP--KEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE----TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCc--hHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 446788877 55688999999999999865544 45679999999999999988864
No 150
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=74.83 E-value=1.2 Score=46.97 Aligned_cols=21 Identities=38% Similarity=1.225 Sum_probs=20.3
Q ss_pred cccccccccCCCCCCCccCCC
Q 008042 194 VCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 194 pC~YFarG~Ck~GssCrF~Hg 214 (579)
.|-||-.|.|..|..|+|.|+
T Consensus 94 vCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHhccCCCCCCcccccch
Confidence 699999999999999999998
No 151
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=73.80 E-value=1.6 Score=46.73 Aligned_cols=22 Identities=41% Similarity=1.239 Sum_probs=11.9
Q ss_pred cccccccc-ccCCCCCCCccCCC
Q 008042 193 KVCHYFNK-GFCKHGNNCRYFHG 214 (579)
Q Consensus 193 kpC~YFar-G~Ck~GssCrF~Hg 214 (579)
++|.||.. |.|.+|..|.|.|+
T Consensus 106 rec~ff~~~g~c~~~~~c~y~h~ 128 (325)
T KOG1040|consen 106 RECKFFSLFGECTNGKDCPYLHG 128 (325)
T ss_pred ccccccccccccccccCCcccCC
Confidence 35555544 55555555555555
No 152
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=72.76 E-value=1.7 Score=45.80 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=21.7
Q ss_pred ccccccc-ccccCCCCCCCccCCCC
Q 008042 192 VKVCHYF-NKGFCKHGNNCRYFHGH 215 (579)
Q Consensus 192 ~kpC~YF-arG~Ck~GssCrF~Hg~ 215 (579)
.-||.|| .+|.|+.|+.|.|.|..
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 5589999 88999999999999983
No 153
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=69.92 E-value=1.9 Score=43.86 Aligned_cols=22 Identities=36% Similarity=1.118 Sum_probs=19.1
Q ss_pred cccccc-ccccCCCCCCCccCCC
Q 008042 193 KVCHYF-NKGFCKHGNNCRYFHG 214 (579)
Q Consensus 193 kpC~YF-arG~Ck~GssCrF~Hg 214 (579)
--|.|| +.|.|..|..|||+|.
T Consensus 207 vycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred eEEEEecCCCcccCCceeeeecc
Confidence 458887 6799999999999997
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=64.20 E-value=3.8 Score=43.14 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeec----CCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEEeec
Q 008042 347 GSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPC----QQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLVKPY 422 (579)
Q Consensus 347 ~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~----drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~Vk~A 422 (579)
...+.|+|.+ .+.+.+.+...++.++|.+.++.+.. +.++|++.|.|...+.+..|+...-...+.++.+..-..
T Consensus 87 ~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4679999999 88888888999999999888887766 278999999999999999999985445666666655444
Q ss_pred ccc
Q 008042 423 REK 425 (579)
Q Consensus 423 ~~K 425 (579)
..+
T Consensus 166 ~~~ 168 (285)
T KOG4210|consen 166 TRR 168 (285)
T ss_pred ccc
Confidence 333
No 155
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=62.94 E-value=3.5 Score=43.53 Aligned_cols=27 Identities=41% Similarity=1.024 Sum_probs=23.3
Q ss_pred CCCCccccccccc-ccCCC-CCCCccCCC
Q 008042 188 PEFPVKVCHYFNK-GFCKH-GNNCRYFHG 214 (579)
Q Consensus 188 ~~~~~kpC~YFar-G~Ck~-GssCrF~Hg 214 (579)
..+.-..|.+|.+ |.|+. |.+|+|.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 4566788999877 99999 999999888
No 156
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=62.69 E-value=8 Score=37.86 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=45.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhc-CCCE---EEEEeecC------CCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSK-FGPV---QDVRIPCQ------QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~Fsq-FG~V---~~VrI~~d------rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr 415 (579)
..+|.|.+| +..+||+++++..+. +|.- ..+.-..+ ..-.-|+|.|.+.+++..-...++|+.+.+.
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 459999999 889999999997776 6666 33321111 1233489999999999999999999777443
No 157
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=59.52 E-value=4 Score=43.89 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=23.6
Q ss_pred CCCcccccccccccCCCCCCCccCCC
Q 008042 189 EFPVKVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 189 ~~~~kpC~YFarG~Ck~GssCrF~Hg 214 (579)
..+-..|+||.+|.|+.|..|-|.|-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 45678999999999999999999986
No 158
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=53.97 E-value=26 Score=40.21 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=47.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHhhc--CCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCC--CceEcCeEEE
Q 008042 350 QIYLTFPAESTFTEQDVSNYFSK--FGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGN--PHFVCGARVL 418 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~Fsq--FG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn--~~~I~Gr~V~ 418 (579)
-|.+.-| +.++-+|+|+.+|.- +=++.+|..-. .- -=||||++..+|+.|+..+. -..|.|+.|.
T Consensus 177 IvilREI-pettp~e~Vk~lf~~encPk~iscefa~--N~-nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 177 IVILREI-PETTPIEVVKALFKGENCPKVISCEFAH--ND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred EEEEeec-CCCChHHHHHHHhccCCCCCceeeeeee--cC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3445667 788889999999975 67888887654 22 24999999999999988752 3455666553
No 159
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=48.78 E-value=1.1e+02 Score=27.94 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=49.2
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG-~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~G 414 (579)
...+.+..+ ++.++-++|..+.+.+- .|..++|++| ..|=.+.++|.+.+.|..-....||..++.
T Consensus 13 ~~~~~l~vp-~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVP-PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeC-cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334455555 67777778876666654 6778899997 456678999999999999999999876643
No 160
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=47.13 E-value=7.7 Score=39.04 Aligned_cols=23 Identities=30% Similarity=1.078 Sum_probs=18.7
Q ss_pred ccccccc-ccccCCCCCCCccCCC
Q 008042 192 VKVCHYF-NKGFCKHGNNCRYFHG 214 (579)
Q Consensus 192 ~kpC~YF-arG~Ck~GssCrF~Hg 214 (579)
--.|.=| ..|||--|.+|+|+|-
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred cccccchhhcccccCCchhhhhhh
Confidence 4467655 5599999999999996
No 161
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=43.88 E-value=12 Score=39.72 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=22.9
Q ss_pred CCcccccccccccCCCCCCCccCCC
Q 008042 190 FPVKVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 190 ~~~kpC~YFarG~Ck~GssCrF~Hg 214 (579)
-+--+|++|-+|-|+.|..|.|+|+
T Consensus 102 ~s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 102 SSSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred cCCcccchhccccCcCCCccccccC
Confidence 3566899999999999999999999
No 162
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=43.45 E-value=17 Score=43.35 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCce--EcCeEEEEee
Q 008042 344 IVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHF--VCGARVLVKP 421 (579)
Q Consensus 344 ~~~~~rtIyVg~L~~~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~--I~Gr~V~Vk~ 421 (579)
+-|...+.++.+. .-..+..-|..+|++||.|.+++..+ .-..|.|.|...+.|-.|++.+.|.. +.|-..+|..
T Consensus 294 v~plqp~~~~~nn-~v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 294 VFPLQPKQSLENN-AVNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred cccCcchhhhhcc-cccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 3455567777777 56788999999999999999999887 44569999999999999999987754 4677888877
Q ss_pred ccc
Q 008042 422 YRE 424 (579)
Q Consensus 422 A~~ 424 (579)
|+.
T Consensus 371 ak~ 373 (1007)
T KOG4574|consen 371 AKT 373 (1007)
T ss_pred ccc
Confidence 764
No 163
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=43.44 E-value=11 Score=40.40 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=24.0
Q ss_pred CCCCCCCCcccccccccccCCCCCCCccCCC
Q 008042 184 SPSLPEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 184 s~s~~~~~~kpC~YFarG~Ck~GssCrF~Hg 214 (579)
+.-++....-=|+=|.||.|.| .+|||+|.
T Consensus 63 ~~~V~~g~v~aC~Ds~kgrCsR-~nCkylHp 92 (331)
T KOG2494|consen 63 NCQVSNGRVIACFDSQKGRCSR-ENCKYLHP 92 (331)
T ss_pred CCCccCCeEEEEeccccCccCc-ccceecCC
Confidence 3344566677899999999999 55999998
No 164
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=41.06 E-value=5.4 Score=40.77 Aligned_cols=67 Identities=28% Similarity=0.350 Sum_probs=54.0
Q ss_pred CcEEEEcC----CCCCCCCHHHHHHHhhcCCCEEEEEeecC---CCCceEEEEECCHHHHHHHHHhCCCceEcCe
Q 008042 348 SRQIYLTF----PAESTFTEQDVSNYFSKFGPVQDVRIPCQ---QKRMFGFVTFVFAETVKQILAKGNPHFVCGA 415 (579)
Q Consensus 348 ~rtIyVg~----L~~~~~tEedLr~~FsqFG~V~~VrI~~d---rsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr 415 (579)
..|++-|+ | +..++++.+...|++-|+|+.+++..+ +.|-++||++.-...+-.++....+...--+
T Consensus 80 q~~~r~G~shapl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 80 QRTLRCGNSHAPL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hcccccCCCcchh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 44666666 6 678999999999999999999999985 7899999999888888888877554443333
No 165
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=39.85 E-value=11 Score=38.50 Aligned_cols=23 Identities=48% Similarity=1.096 Sum_probs=19.6
Q ss_pred cccccccccccCCCCCCCccCCCC
Q 008042 192 VKVCHYFNKGFCKHGNNCRYFHGH 215 (579)
Q Consensus 192 ~kpC~YFarG~Ck~GssCrF~Hg~ 215 (579)
..-|.||--|.|.+ -+|||+|=+
T Consensus 261 ipacryfllgkcnn-pncryvhih 283 (377)
T KOG1492|consen 261 IPACRYFLLGKCNN-PNCRYVHIH 283 (377)
T ss_pred cchhhhhhhccCCC-CCceEEEEe
Confidence 34599999999998 889999963
No 166
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=36.03 E-value=18 Score=38.55 Aligned_cols=26 Identities=35% Similarity=0.897 Sum_probs=23.5
Q ss_pred CCCccccccccc-ccCCCCCCCccCCC
Q 008042 189 EFPVKVCHYFNK-GFCKHGNNCRYFHG 214 (579)
Q Consensus 189 ~~~~kpC~YFar-G~Ck~GssCrF~Hg 214 (579)
.|.-+||.-+.+ |||.-|.-|.|.||
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred ccccCCccchhhcccCccccccccccC
Confidence 556699999887 99999999999999
No 167
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=35.19 E-value=58 Score=27.08 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCEEEEEee
Q 008042 364 QDVSNYFSKFGPVQDVRIP 382 (579)
Q Consensus 364 edLr~~FsqFG~V~~VrI~ 382 (579)
.+||++|++.|+|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999988773
No 168
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=34.22 E-value=15 Score=37.87 Aligned_cols=22 Identities=36% Similarity=0.964 Sum_probs=20.5
Q ss_pred ccccccccccCCCCCCCccCCC
Q 008042 193 KVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 193 kpC~YFarG~Ck~GssCrF~Hg 214 (579)
-.|-.|.-|.|..|..|+|.||
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3699999999999999999999
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=27.61 E-value=28 Score=36.29 Aligned_cols=27 Identities=26% Similarity=0.787 Sum_probs=23.7
Q ss_pred CCCCcccccccccccCCCCCCCccCCC
Q 008042 188 PEFPVKVCHYFNKGFCKHGNNCRYFHG 214 (579)
Q Consensus 188 ~~~~~kpC~YFarG~Ck~GssCrF~Hg 214 (579)
..+--.+|-.|-++.|.+|..|-|.|-
T Consensus 148 T~~rea~C~~~e~~~C~rG~~CnFmH~ 174 (260)
T KOG2202|consen 148 TDFREAICGQFERTECSRGGACNFMHV 174 (260)
T ss_pred CchhhhhhcccccccCCCCCcCcchhh
Confidence 455567899999999999999999996
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.47 E-value=1.6e+02 Score=33.22 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=55.5
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHhhcCC-CEEEEEeecC--CCCceEEEEECCHHHHHHHHHhCCCceEcC
Q 008042 348 SRQIYLTFPAESTFTEQDVSNYFSKFG-PVQDVRIPCQ--QKRMFGFVTFVFAETVKQILAKGNPHFVCG 414 (579)
Q Consensus 348 ~rtIyVg~L~~~~~tEedLr~~FsqFG-~V~~VrI~~d--rsRGfGFVtF~~~E~A~~Al~~mn~~~I~G 414 (579)
...|.|-.+ |-.+|-.||-.|...|= .|.+++|++| ..|=...|+|.+.++|..-++..||..++.
T Consensus 74 ~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 788999999 67789999998887754 6889999997 456567999999999999999999976643
No 171
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.63 E-value=48 Score=37.73 Aligned_cols=22 Identities=41% Similarity=1.026 Sum_probs=17.3
Q ss_pred cccc-ccccCCCCCCCccCCCCC
Q 008042 195 CHYF-NKGFCKHGNNCRYFHGHP 216 (579)
Q Consensus 195 C~YF-arG~Ck~GssCrF~Hg~~ 216 (579)
|-.| +.|+|..|-+|||+-++.
T Consensus 117 Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 117 CPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred cceeeccccCCccceeehhhccc
Confidence 5554 669999999999976643
No 172
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=36 Score=36.98 Aligned_cols=26 Identities=42% Similarity=0.930 Sum_probs=23.6
Q ss_pred CCCccccccccc--ccCCCCCCCccCCC
Q 008042 189 EFPVKVCHYFNK--GFCKHGNNCRYFHG 214 (579)
Q Consensus 189 ~~~~kpC~YFar--G~Ck~GssCrF~Hg 214 (579)
+.+.|.|.||.+ |.|..|+.|-|.|-
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~ 273 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHL 273 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccc
Confidence 567899999987 89999999999996
No 173
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=23.49 E-value=4.4e+02 Score=22.01 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCeEEEE
Q 008042 359 STFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 419 (579)
Q Consensus 359 ~~~tEedLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~V 419 (579)
-.++-++++.-+..|+-. +|+ .| .-|| ||.|.+.++|+++....++..+.+.++.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~--~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIR--DD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEE--ec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467899999999999853 332 22 3443 88999999999999999999988887754
No 174
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=23.40 E-value=45 Score=33.31 Aligned_cols=75 Identities=12% Similarity=0.001 Sum_probs=52.0
Q ss_pred EEEEcCCCCCCCCH----HHHHHHhhcCCCEEEEEeecCCCCceEEEEECCHHHHHHHHHhCCCceEcCe-EEEEeeccc
Q 008042 350 QIYLTFPAESTFTE----QDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGA-RVLVKPYRE 424 (579)
Q Consensus 350 tIyVg~L~~~~~tE----edLr~~FsqFG~V~~VrI~~drsRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr-~V~Vk~A~~ 424 (579)
++.+..+....+++ ....++|-+|-+..-.++.+ +.++--|.|.+++.|..|..++....+.|. .++...+++
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 34455553333333 33445666666665555554 666777899999999999999999999998 788887776
Q ss_pred cc
Q 008042 425 KS 426 (579)
Q Consensus 425 K~ 426 (579)
--
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 43
No 175
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=2.7e+02 Score=32.50 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=56.4
Q ss_pred CCCCcEEEEcCCCCC-CCCHHHHHHHhhcC----CCEEEEEeec---C---------C----------------------
Q 008042 345 VAGSRQIYLTFPAES-TFTEQDVSNYFSKF----GPVQDVRIPC---Q---------Q---------------------- 385 (579)
Q Consensus 345 ~~~~rtIyVg~L~~~-~~tEedLr~~FsqF----G~V~~VrI~~---d---------r---------------------- 385 (579)
+..+++|-|-|+ +| .+..+||--+|+.| |.|.+|.|.. + .
T Consensus 171 ~~~T~RLAVvNM-DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNM-DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEecc-ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456789999999 87 57789999888765 5888987754 1 0
Q ss_pred -----------------CCceEEEEECCHHHHHHHHHhCCCceEcCeEEE
Q 008042 386 -----------------KRMFGFVTFVFAETVKQILAKGNPHFVCGARVL 418 (579)
Q Consensus 386 -----------------sRGfGFVtF~~~E~A~~Al~~mn~~~I~Gr~V~ 418 (579)
.-=||.|+|.+.++|.++++.-+|..+...-..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 112699999999999999999999887654433
No 176
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=20.45 E-value=1.1e+02 Score=35.28 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCCHHHHHHHh-hcCCCEEEEEeecC----CCCceEEEEECCHHHHHHHHHhCCCceE
Q 008042 350 QIYLTFPAESTFTEQDVSNYF-SKFGPVQDVRIPCQ----QKRMFGFVTFVFAETVKQILAKGNPHFV 412 (579)
Q Consensus 350 tIyVg~L~~~~~tEedLr~~F-sqFG~V~~VrI~~d----rsRGfGFVtF~~~E~A~~Al~~mn~~~I 412 (579)
++-|.++ +...|-.-|.+.- ...|.=.-+.++.| ...|||||.|..++.+..+.++.|++.+
T Consensus 390 t~~ikni-pNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 390 TLMIKNI-PNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKW 456 (549)
T ss_pred hhHhhcc-CchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCch
Confidence 4555565 3344444444332 23677777788877 4689999999999999999999887654
Done!