RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008044
(579 letters)
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Length = 429
Score = 225 bits (576), Expect = 7e-68
Identities = 129/439 (29%), Positives = 220/439 (50%), Gaps = 38/439 (8%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
++ F+ E+R++ T ++ VI R+G IP+PG + + +D+L GSV L D
Sbjct: 3 EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 260
G +L+ F LG+ P I ASI+MQ+L +PSL +L KE G G KI Y +++L
Sbjct: 62 FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121
Query: 261 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
A ++++ +A + S + + +++T LV G M + WI D I+E G
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181
Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 375
G G+SLII GI+ + + + ++ + +L ++ + + + V V E R
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPL-TLLLIIALIIAIIVGIVYVQEAER 240
Query: 376 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 431
++ +QY G +L + + Y+P INP+G+ P++ LL PS L +
Sbjct: 241 RIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIPSTLLNF 291
Query: 432 LGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMG 488
+ +PF + + ++ P Y +Y F+ F F A N P E+A+ L+K G
Sbjct: 292 VQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYFYTAVLIN-PVELAENLHKAG 344
Query: 489 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 548
A IP V+PG+ T++YL +I F+G L LS++A ++ + N F G T+ L
Sbjct: 345 AFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTAL 401
Query: 549 IIVGSIIELRRSYQAYNVM 567
I+VG ++ R + Y +
Sbjct: 402 IVVGVALDTFRQIETYLIQ 420
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, prote transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y
Length = 434
Score = 223 bits (572), Expect = 3e-67
Identities = 110/439 (25%), Positives = 185/439 (42%), Gaps = 37/439 (8%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
A S + E+R+R+ T +++ R+G FIP PG D I Q++L G V + +
Sbjct: 3 KAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKI-QEFLRTAQGGVFGIINL 61
Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLG 261
G + S F LGI P I A+I+MQ+L +VP+L +L KEG +G I Y +
Sbjct: 62 FSGGNFERFSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIA 121
Query: 262 FAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFG 316
+ +A + + S V V G + W+ + I+E G G
Sbjct: 122 LGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIG 181
Query: 317 QGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 376
G+SLII GI+ + + + + + V F L L + V + R+
Sbjct: 182 NGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAF-LFFLAFIVLAFAGMAAVQQAERR 240
Query: 377 VKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL 432
+ +QY G ++ YIP +N +G+ P++ +L P LA+
Sbjct: 241 IPVQYARKVVGGRVYGGQAT---------YIPIKLNAAGVIPIIFAAAILQIPIFLAAPF 291
Query: 433 G-SPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMG 488
+P Q + NP I V LF A + PK IA+ L + G
Sbjct: 292 QDNPVLQGIANFFNPTR------PSGLFIEVLLVILFTYVYTAVQFD-PKRIAESLREYG 344
Query: 489 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 548
IP ++PG+ T+++L I + WG L L ++ I+ + + +L
Sbjct: 345 GFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTG--IHSIAFSGIGLL 402
Query: 549 IIVGSIIELRRSYQAYNVM 567
I+VG ++ R ++ ++
Sbjct: 403 IVVGVALDTLRQVESQLML 421
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP-binding membrane,
nucleotide-binding, protein transport; HET: ADP; 4.50A
{Thermotoga maritima MSB8}
Length = 431
Score = 220 bits (562), Expect = 8e-66
Identities = 104/441 (23%), Positives = 206/441 (46%), Gaps = 47/441 (10%)
Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
A ++ FK E+R R+ T + +++ R+G +IP+PG + + ++ + G
Sbjct: 3 QAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAW-GEIFRRIAETAGVAGIL 61
Query: 205 --------GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIW 256
GA + S F + ++P I ASI++Q+L ++PSL ++ +EG +G +K Y
Sbjct: 62 SFYDVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTR 121
Query: 257 WISLGFAILEAVIVACY---SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISES 313
++L +A V+ S P + + ++ +++ ++ G M + W+ + I+E
Sbjct: 122 RLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEK 181
Query: 314 GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEG 373
G G G S++I GI+ Y + + L + L+ V I ++V +
Sbjct: 182 GIGNGISILIFAGIVARYPSYIRQAYLGGLN-----LLEWIFLIAVALITIFGIILVQQA 236
Query: 374 CRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 429
R++ +QY G ++ A Y+P +N G+ P++ + +++ PS +A
Sbjct: 237 ERRITIQYARRVTGRRVYGGAST---------YLPIKVNQGGVIPIIFASAIVSIPSAIA 287
Query: 430 SILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNK 486
SI + ++ + ++Y IY VF F F + P+EI++ + K
Sbjct: 288 SITNNETLKN---LFRAGG------FLYLLIYGLLVFFFTYFYSVVIFD-PREISENIRK 337
Query: 487 MGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTS 546
G IP ++PG++T +YL ++ F G + L ++A ++ + IG TS
Sbjct: 338 YGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAI---KVNVWIGGTS 394
Query: 547 VLIIVGSIIELRRSYQAYNVM 567
LI VG +++ + + + VM
Sbjct: 395 ALIAVGVALDIIQQMETHMVM 415
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
nucleotide-binding, PR biosynthesis, translation,
zinc-finger, 70S ribosome, ribos translocon; 7.10A
{Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Length = 435
Score = 218 bits (559), Expect = 2e-65
Identities = 113/430 (26%), Positives = 194/430 (45%), Gaps = 38/430 (8%)
Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF---GAELKLS 211
E++RRL +++ RIG FIP+PG D ++ L G++ E+ + GA + S
Sbjct: 11 ELKRRLLFVIGALIVFRIGSFIPIPGIDAAVL-AKLLEQQRGTIIEMFNMFSGGALSRAS 69
Query: 212 FFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVA 271
F LGI P I ASI++Q+L + P+L +++KEG G KI Y + +L AI +++ +A
Sbjct: 70 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIA 129
Query: 272 CYSLPYSIYAA---SHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGIL 328
+ LV G M + W+ + I+E G G G S+II GI+
Sbjct: 130 TGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIV 189
Query: 329 TGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY----YGF 384
G + + Q + + L + + VT + V V G R++ + Y G
Sbjct: 190 AGLPPAIAHTIEQARQGDLHFLVL-LLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGR 248
Query: 385 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS----PFWQHV 440
++ +A ++P +N +G+ P + + ++ FP+ +AS G + +
Sbjct: 249 RVYAAQST---------HLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTI 299
Query: 441 KEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMGARIPNVKPG 497
L P +Y +YA + F F A N P+E AD L K GA +P ++PG
Sbjct: 300 SLYLQPGQ------PLYVLLYASAIIFFCFFYTALVFN-PRETADNLKKSGAFVPGIRPG 352
Query: 498 KATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 557
+ T +Y+ K+ G L ++ + + + F G TS+LI+V I++
Sbjct: 353 EQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAM---KVPFYFGGTSLLIVVVVIMDF 409
Query: 558 RRSYQAYNVM 567
Q +
Sbjct: 410 MAQVQTLMMS 419
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 167 bits (425), Expect = 4e-46
Identities = 69/443 (15%), Positives = 135/443 (30%), Gaps = 66/443 (14%)
Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
+ + +L T +++V+ I I + ++ F A +
Sbjct: 20 EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI--PAIFEFWQT-------ITASRIGTL 70
Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
LGI P + A I+MQ+L + ++Q+ + + +S+ +EAV+
Sbjct: 71 ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFV- 127
Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTG-- 330
+ + + + G++ + ++ + +S+ G G G L I G+
Sbjct: 128 ----GAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 183
Query: 331 ----YTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 386
E L V ++ ++G IV + V ++ L + K
Sbjct: 184 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTI-IVFLMVVYAECMRVEIPLAHGRIKG 242
Query: 387 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL------------GS 434
A P PV+ L A + L G
Sbjct: 243 AVG------------KYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 290
Query: 435 PFWQHVKEILNPETSVGA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLN 485
+ L+ + + VY +F IF + PK +A +
Sbjct: 291 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIG 350
Query: 486 KMGARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 544
+G I + + IE+ L + + LAT + + G G
Sbjct: 351 SLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGG 401
Query: 545 TSVLIIVGSIIELRRSYQAYNVM 567
T VL+ V + +
Sbjct: 402 TGVLLTVSIVYRMYEQLLRERTS 424
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 164 bits (418), Expect = 8e-45
Identities = 81/487 (16%), Positives = 153/487 (31%), Gaps = 84/487 (17%)
Query: 133 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 191
+ I L + +R R T V +++ + IP+ G R+ QDY
Sbjct: 2 GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI--QDYF 59
Query: 192 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 251
F+ A S LGI P + A I++Q+L + +++L +
Sbjct: 60 QFLRV-------VLAGRNGSILTLGIGPIVTAGIILQLL--VGSEIIKLDLANPEDRRFY 110
Query: 252 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311
++ S+ EA + + + ++ L G + + + + +S
Sbjct: 111 QALQRVFSVFMCFFEAAVWI-LGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVS 169
Query: 312 ESGFGQGSSLIICVGILTG---------------------------YTETLYKMLSQLLG 344
+ G G G SL I G+ + +L L
Sbjct: 170 KWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLW 229
Query: 345 SSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIP 404
++ +L V + ++ +VV +V++ L V P
Sbjct: 230 GAIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIP-----LGYRGVT------VRGSYP 278
Query: 405 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI--------------LNPETSV 450
P++ T L A + A +L + + P ++
Sbjct: 279 IRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNI 338
Query: 451 GA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMGARIPNVKPGKATI 501
+ R VY + F LF + + IA L + G +IP + T+
Sbjct: 339 FSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTL 398
Query: 502 E-YLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRS 560
E L + FWG L ++++A + L G T +L+ VG +
Sbjct: 399 EKVLQRYIPYVTFWGSLTVALIAVLADFL---------GALGTGTGILLTVGILYRFYEE 449
Query: 561 YQAYNVM 567
+
Sbjct: 450 IAREQIT 456
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 134 bits (338), Expect = 4e-34
Identities = 68/477 (14%), Positives = 147/477 (30%), Gaps = 75/477 (15%)
Query: 133 RFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYL 191
+FL I+ +L + K + + ++ TA+ + I + IPL G +
Sbjct: 4 KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 192 SFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKI 251
A + + +LGISP + + ++MQ+L V +
Sbjct: 64 WMRV--------ILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD---RALF 112
Query: 252 KSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311
+ I ++++ + + ++ L + + + + +
Sbjct: 113 NGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLIT--IQLFVAGLIVLLLDELLQ 170
Query: 312 ES-GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVV 370
+ G G G SL I I + + G + + ++ L + T +
Sbjct: 171 KGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRAL 230
Query: 371 TEGCRKVKLQYYGFKLASAA-----------REDSPIT-----EVEPYIPFNINPSGMQP 414
E + L +A+ R D PI P + + P
Sbjct: 231 REAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIP 290
Query: 415 VLTTTYLLAFPSILASILGSPFWQH-------------------------VKEILNPETS 449
++ + L++ +++ +L + F + + L+P S
Sbjct: 291 IILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPES 350
Query: 450 VGA------RPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMGARIPNVKPGKAT 500
G+ VY F+ I K++A L + + +
Sbjct: 351 FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS-M 409
Query: 501 IEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 557
+ L + + +GGL + L+ + L G T +L+ V I +
Sbjct: 410 VHELNRYIPTAAAFGGLCIGALSVLADFL---------GAIGSGTGILLAVTIIYQY 457
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 120 bits (301), Expect = 3e-29
Identities = 72/507 (14%), Positives = 154/507 (30%), Gaps = 84/507 (16%)
Query: 129 MYKNRFLNFIR-LSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIP 187
M R ++ ++ + +L F K ++ T +I PL G +P
Sbjct: 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVG-----LP 54
Query: 188 QDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDG 247
+ V+ + L + + G+ P I + +++Q+L ++++ +
Sbjct: 55 KATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLA--GLKVIKVNFKIQSD 112
Query: 248 HEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWIC 307
E +S ++ ++ I + SV + + F LV + + +
Sbjct: 113 RELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTLLA 168
Query: 308 DTISES-GFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMW 366
+ I + GF G+ +I V I T + + +G L+ + +
Sbjct: 169 EVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDD-QTEAQGALINLIQGLRSK 227
Query: 367 AVVVTEGCRKVKLQYYGFKLASA---------------AREDSPIT-----EVEPYIPFN 406
G + Y L + R + PI P
Sbjct: 228 HKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIK 287
Query: 407 INPSGMQPVLTTTYLLAFPSILASILGSPF-------------------------WQHVK 441
+ +G VL + +L + I A +L
Sbjct: 288 LLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPL 347
Query: 442 EILNPETSVGARPW---VYYTIYAFFVFLFNIF------DIANL-PKEIADYLNKMGARI 491
+L P TS + + Y+ F+ + I+ I+ +++A G +
Sbjct: 348 SLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITL 407
Query: 492 PNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIV 551
+ + + L K+ G +LS++ L G +++ +
Sbjct: 408 MGRRE-QNVAKELNKVIPIAAVTGASVLSLITVIGESL---------GLKGKAAGIVVGI 457
Query: 552 GSIIEL----RRSYQAYNVMPSLSKAL 574
L YQ +L++ L
Sbjct: 458 AGGFSLLEVITIEYQQSGGQSALNQVL 484
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 1e-11
Identities = 110/661 (16%), Positives = 192/661 (29%), Gaps = 239/661 (36%)
Query: 1 MEATLL---SSHHFTPQL---FT----------------TTPVKLGG---GHVLADNRFC 35
+E LL +S QL F TTP +L G G+V +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---SSLV 72
Query: 36 HPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRAN-----------------KRYSV--- 75
P F V L +L + K +
Sbjct: 73 EPSKVGQFDQVLNLCLTE-------FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 76 -YSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDS------QGLRDVTDNETF---RS 125
++ + + +++SAL AV + QG ++ F R
Sbjct: 126 YITARIMAKRPFDKKSNSAL---FRAVG---EGNAQLVAIFGGQG----NTDDYFEELRD 175
Query: 126 KPKMYKNRFLNFIRLSS-VLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRR 184
+ Y + I+ S+ L+ + +E ++F T L ++ + P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAE---KVF-TQGLNILEWLENPSNTP----- 226
Query: 185 LIPQDYL--SFVSG---SVDELGDFGAELKLSFFQLGISPQIVASILMQVLCH----IVP 235
+DYL +S V +L + K LG +P + S L H +
Sbjct: 227 --DKDYLLSIPISCPLIGVIQLAHYVVTAK----LLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 236 SLVQLRKEGLDGHEKIKSYI---WWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVT 292
+ ++ I ++I G EA SLP SI S + +
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAY--PNTSLPPSILEDSLENNEGVPS 336
Query: 293 AFLLVCGAMTMSWICDTISE--SGFGQGSSLIICV--G----ILTGYTETLYKMLSQLLG 344
L + +T + D +++ S G + I + G +++G ++LY + L
Sbjct: 337 PMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-- 393
Query: 345 SSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIP 404
RK K A + + S IP
Sbjct: 394 ------------------------------RKAK--------APSGLDQSR-------IP 408
Query: 405 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH------VKEILNPETSVGARPW--- 455
F S + + +L P + SPF H +++N + +
Sbjct: 409 F----SERKLKFSNRFL---P------VASPF--HSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 456 -----VYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQAS 510
VY T F+ D+ L I++ + R+P V
Sbjct: 454 DIQIPVYDT--------FDGSDLRVLSGSISERIVDCIIRLP-V---------------- 488
Query: 511 TRFWGGLLLSILATSST-ILD----------HYLRRINEGFSIGFTSVLIIVGSIIELRR 559
W + +T ILD R +G T V +IV +++
Sbjct: 489 --KWE----TTTQFKATHILDFGPGGASGLGVLTHRNKDG-----TGVRVIVAGTLDINP 537
Query: 560 S 560
Sbjct: 538 D 538
Score = 35.8 bits (82), Expect = 0.043
Identities = 39/166 (23%), Positives = 54/166 (32%), Gaps = 48/166 (28%)
Query: 425 PSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF--VFLFNIFDI----ANLPK 478
P+ A ++G F +V ++ P VG V F +L DI A L +
Sbjct: 54 PTTPAELVGK-FLGYVSSLVEPS-KVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKLLQ 110
Query: 479 EIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINE 538
E L K I N Y+T + R S++ L R + E
Sbjct: 111 ENDTTLVKTKELIKN---------YITARIMAKR-------PFDKKSNSAL---FRAVGE 151
Query: 539 G----FSI--GFTSVLIIVGSII----ELRRSYQAYNVMPSLSKAL 574
G +I G G+ ELR YQ Y L L
Sbjct: 152 GNAQLVAIFGGQ-------GNTDDYFEELRDLYQTY---HVLVGDL 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 3e-07
Identities = 90/629 (14%), Positives = 183/629 (29%), Gaps = 170/629 (27%)
Query: 9 HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSR 68
HH F T + +L+ FV + + V + + LS+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFE-------DAFVD------NFDCKDVQDMPKSILSK 48
Query: 69 ANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN-----ETF 123
+ + S D V + L L + + + + LR N
Sbjct: 49 EEIDHIIMSKD-------AVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPI 98
Query: 124 RSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDR 183
+++ + +I L N + F K + R + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------L 145
Query: 184 RLIPQDYLSFVSG------SV---DELGDFGAELKLSF--FQLGI----SPQIVASILMQ 228
L P + + G + D + + K+ F F L + SP+ V +L Q
Sbjct: 146 ELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-Q 203
Query: 229 VLCH-IVPSLVQLR-------------KEGLDGHEKIKSY---------IW--WISLGFA 263
L + I P+ + L K K Y +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------ 257
Query: 264 ILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLII 323
A ++C L + + VT FL A T + I
Sbjct: 258 AWNAFNLSCKILLTTRFKQ--------VTDFL---SAATTTHISLDHHSMTLTPDEVK-- 304
Query: 324 CVGILTGYTETLYKML-SQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYY 382
+L Y + + L ++L ++ P L ++ + ++
Sbjct: 305 --SLLLKYLDCRPQDLPREVLTTN----PRRLSIIA--------ESIRDGLATWDNWKHV 350
Query: 383 GFKLASAAREDSPITEVEP------YIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF 436
+ E S + +EP + ++ P + P+IL S++
Sbjct: 351 NCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSA-HI---------PTILLSLI---- 395
Query: 437 WQHVKE-----ILNP--ETSVGARPWVYYTIY---AFFVFLFNIFDIANLPKEIADYLNK 486
W V + ++N + S+ + TI + + + L + I D+ N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 487 MGARIPNVKPGKATIEY--------LTKIQASTRFWGGLLLSILATSSTILD-HYLRR-- 535
+ +Y L I+ R L ++ LD +L +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM---TLFRMV-----FLDFRFLEQKI 507
Query: 536 INEGFSIGFTSVLIIVGSIIELRRSYQAY 564
++ + + ++ ++ +L+ Y+ Y
Sbjct: 508 RHDSTAWNASGSIL--NTLQQLKF-YKPY 533
Score = 35.6 bits (81), Expect = 0.058
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 51/168 (30%)
Query: 405 FNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFF 464
FN+ + +LTT + + A+ H L P+ + +
Sbjct: 262 FNL---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--------LLLKY 310
Query: 465 VFLFNIFDIANLPKEIAD----YLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLS 520
+ + +LP+E+ L+ + I + G AT + + L +
Sbjct: 311 L---DC-RPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNWKHVNCDK------LTT 357
Query: 521 ILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP 568
I+ +S +L+ E R+ + +V P
Sbjct: 358 IIESSLNVLEPA-----------------------EYRKMFDRLSVFP 382
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.15
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 7/26 (26%)
Query: 484 LNKMGARI----PNVKPG---KATIE 502
L K+ A + + P KAT+E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 31.0 bits (70), Expect = 1.1
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 465 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 507
V L ++IA + L+++G R+ G A + +
Sbjct: 206 VNLIGEYNIAGEFWHVLPLLDELGLRVLCTLAGDARYREVQTM 248
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Length = 573
Score = 31.1 bits (70), Expect = 1.3
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 131 KNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDY 190
K+ + L AES + R LI+ G F PL GF + DY
Sbjct: 11 KDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMN---GGFSPLEGFMNQ---ADY 64
Query: 191 LS 192
Sbjct: 65 DR 66
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG,
heme, hydrogen peroxide, iron, metal-binding, organic
radical; HET: HEM; 2.0A {Mycobacterium tuberculosis}
SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Length = 740
Score = 30.8 bits (70), Expect = 1.3
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367
+ L + + +++ +S WWP G G I W
Sbjct: 74 DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWH 108
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A
{Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Length = 731
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 371
E + L +L+ SS WWP G G I W T
Sbjct: 62 EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGT 100
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 30.3 bits (68), Expect = 2.1
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 465 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 507
+ + ++I E+ L K+G + G AT E +
Sbjct: 209 INVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYEKVQNA 251
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 29.9 bits (66), Expect = 3.0
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 18/173 (10%)
Query: 206 AELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAIL 265
+ SF+ S IL L +P L +L Y SL F +L
Sbjct: 73 DKSTFSFWSGLYSETEGTLIL---LFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLL 129
Query: 266 EAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICV 325
+ A LP+S+Y + L ++ D I + +
Sbjct: 130 ATLFSALAGLPWSLYNTFVIEEKHGFNQQTL------GFFMKDAIKK---------FVVT 174
Query: 326 GILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVK 378
+ +L + ++ G + ++ L+ +VT++A + K
Sbjct: 175 QCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFT 227
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM;
2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3
Length = 720
Score = 29.7 bits (67), Expect = 3.2
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 335 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367
L + L L+ S WWP G G I W
Sbjct: 62 LKQDLQALMTDSQDWWPADWGHYGGLMIRLTWH 94
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and
degradation of murein sacculus and peptidog infectious
diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Length = 454
Score = 28.6 bits (65), Expect = 6.0
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 3/16 (18%)
Query: 479 EI---ADYLNKMGARI 491
EI A++LN+MGAR+
Sbjct: 215 EIVDLANFLNQMGARV 230
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 28.6 bits (64), Expect = 6.4
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 465 VFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKI 507
V + ++I L +MG R G +I +
Sbjct: 223 VAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGDGSISEIELT 265
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase,
fosfomyc binding, transferase; 2.50A {Streptomyces
tendae}
Length = 479
Score = 28.7 bits (65), Expect = 6.7
Identities = 4/16 (25%), Positives = 7/16 (43%), Gaps = 3/16 (18%)
Query: 479 EI---ADYLNKMGARI 491
++ L +GA I
Sbjct: 220 DVTDMVTVLRDLGADI 235
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 28.0 bits (63), Expect = 6.8
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 221 IVASILMQVLCHIVP----SLVQLRKEGLDGHEKIKSYIWWISLGFAILEA 267
+ + VL I P ++++ +E ++ EK I+ GF LE
Sbjct: 99 VNYQAMSIVLSGIQPHQNLAVIRYIEEKINVEEKTAWVNNAITKGFTALEK 149
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 28.5 bits (64), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 473 IANLPKEIADYLNKMGARIPNVKPGKATI 501
I+NL K++A L + R+ V PGK T+
Sbjct: 136 ISNLAKDLARSLAVISVRVVEVIPGKTTV 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 28.4 bits (64), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 473 IANLPKEIADYLNKMGARIPNVKPGKATI 501
I+NL +++A L+ + R+ V PGK +
Sbjct: 89 ISNLSRDLARSLSTVAVRVVEVIPGKPYV 117
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan,
structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex
aeolicus} PDB: 3swg_A*
Length = 425
Score = 28.2 bits (64), Expect = 8.5
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 479 EI---ADYLNKMGARI 491
E+ + L KMGA +
Sbjct: 198 EVMDLIEVLKKMGAHV 213
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase;
inside-OUT alpha/beta barrel; 1.55A {Enterobacter
cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A*
3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A
1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A*
1uae_A* 3kqj_A* 3kr6_A* ...
Length = 419
Score = 28.2 bits (64), Expect = 8.6
Identities = 7/16 (43%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
Query: 479 EI---ADYLNKMGARI 491
EI A++L +GA+I
Sbjct: 190 EIVDTANFLVALGAKI 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,900,346
Number of extensions: 540993
Number of successful extensions: 1215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 36
Length of query: 579
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 480
Effective length of database: 3,937,614
Effective search space: 1890054720
Effective search space used: 1890054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)