BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008045
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 162/582 (27%), Positives = 290/582 (49%), Gaps = 74/582 (12%)
Query: 1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
+EA+Y I PT+E+V ++D +P Y+ A +FF+ EL + K ST I
Sbjct: 68 LEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKT 126
Query: 60 LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 119
L+E+N+ + +SQ F D + ++ + +Q A +IAT+ A+L E+P
Sbjct: 127 LKEINIAFLPYESQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPS 185
Query: 120 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRS 176
VRYR+ +A +F LV KL A Y+ T+ P + +LLILDR
Sbjct: 186 VRYRSDFDENA----SFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRG 233
Query: 177 VDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236
D I+P++HE T+ A+ +DLL +E + Y + V + + PE KEVLL+E D +WVE+RH
Sbjct: 234 FDPISPLLHELTFQAMAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEMRHQ 291
Query: 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLH 296
HIA S+ + +K+ F + + + + +DL ++++ +PQY +++ K S H
Sbjct: 292 HIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTH 345
Query: 297 VEIAGKINRIIRETGLRELGQLEQDLVFG-DAG-------FKDVIKFLTAKEDITRENKL 348
+ +A + ++ + +L ++EQDL G DA ++++ L ++ I+ +K+
Sbjct: 346 LHLAEDCMKQYQQH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQK-ISAYDKI 403
Query: 349 RLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKF 408
R++++ I+ E L++ A + A++ +N+M+ LG + G +
Sbjct: 404 RIILLYI-IHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG---GRRKIPQ 459
Query: 409 DIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468
H R R+ + T+Q+SR+ P +++++E +++L YP +N P
Sbjct: 460 PYHTHNRKERQ----ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR----- 510
Query: 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGT 528
P+ S R W + D G +S K G R+ +F+VGG
Sbjct: 511 --------PSCQQPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGI 547
Query: 529 TRSELRVCHKL--TAKLNREVVLGSSSLDDPPQFITKLKMLT 568
+ SE+R +++ TAK N EV+LGS+ + P + L+ ++
Sbjct: 548 SYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 156/580 (26%), Positives = 287/580 (49%), Gaps = 78/580 (13%)
Query: 1 MEAIYFIQPTKENVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
+EA+Y I P++++V + +SD + Y+ A VFF+ L + K S I
Sbjct: 71 LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKT 129
Query: 60 LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 119
L E+N+ + +SQ + D + + + ++ K + L +A +IAT+ A+L+E+P
Sbjct: 130 LTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMK-NPILERLAEQIATLCATLKEYPA 188
Query: 120 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRS 176
VRYR +A+ LA + + L YK T+ P +LLILDR
Sbjct: 189 VRYRGEYKDNAL------------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRG 236
Query: 177 VDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236
D +P++HE T+ A+ +DLL +E + Y +E + G KEVLL+E D +W+ LRH
Sbjct: 237 FDPSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHK 294
Query: 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLH 296
HIA+ S+ + + F S + G + RDL ++++ +PQY +++ K S H
Sbjct: 295 HIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTH 347
Query: 297 VEIAGKINRIIRETGLRELGQLEQDLVFG-DA---GFKDVIKFLTA---KEDITRENKLR 349
+ +A + + T + +L ++EQDL G DA KD ++ + +++ +K+R
Sbjct: 348 LHLAEDCMKHYQGT-VDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 406
Query: 350 LLMIVASIYPEKFEGEKGLN-LMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKF 408
++++ I+ + E+ LN L++ A++ +D + NM LG + + +
Sbjct: 407 IILLY--IFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST--------- 455
Query: 409 DIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468
+ ++ + RK+R E+T+QLSR+ P+I++++E +++L YP ++ S TT
Sbjct: 456 -LRRRSKPERKERI-SEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTT 513
Query: 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGT 528
S R W + ++ + S G R+ +FI+GG
Sbjct: 514 AV-------------SARYGHWHKNKAPGEYRS---------------GPRLIIFILGGV 545
Query: 529 TRSELRVCHKLT-AKLNREVVLGSSSLDDPPQFITKLKML 567
+ +E+R +++T A EV++GS+ + P + + LK L
Sbjct: 546 SLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 585
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 156/580 (26%), Positives = 287/580 (49%), Gaps = 78/580 (13%)
Query: 1 MEAIYFIQPTKENVVAFLSDMSGK-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
+EA+Y I P++++V + +SD + Y+ A VFF+ L + K S I
Sbjct: 83 LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKT 141
Query: 60 LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 119
L E+N+ + +SQ + D + + + ++ K + L +A +IAT+ A+L+E+P
Sbjct: 142 LTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMK-NPILERLAEQIATLCATLKEYPA 200
Query: 120 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRS 176
VRYR +A+ LA + + L YK T+ P +LLILDR
Sbjct: 201 VRYRGEYKDNAL------------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRG 248
Query: 177 VDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236
D +P++HE T+ A+ +DLL +E + Y +E + G KEVLL+E D +W+ LRH
Sbjct: 249 FDPSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHK 306
Query: 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLH 296
HIA+ S+ + + F S + G + RDL ++++ +PQY +++ K S H
Sbjct: 307 HIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTH 359
Query: 297 VEIAGKINRIIRETGLRELGQLEQDLVFG-DA---GFKDVIKFLTA---KEDITRENKLR 349
+ +A + + T + +L ++EQDL G DA KD ++ + +++ +K+R
Sbjct: 360 LHLAEDCMKHYQGT-VDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIR 418
Query: 350 LLMIVASIYPEKFEGEKGLN-LMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKF 408
++++ I+ + E+ LN L++ A++ +D + NM LG + + +
Sbjct: 419 IILLY--IFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST--------- 467
Query: 409 DIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468
+ ++ + RK+R E+T+QLSR+ P+I++++E +++L YP ++ S TT
Sbjct: 468 -LRRRSKPERKERI-SEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTT 525
Query: 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGT 528
S R W + ++ + S G R+ +FI+GG
Sbjct: 526 AV-------------SARYGHWHKNKAPGEYRS---------------GPRLIIFILGGV 557
Query: 529 TRSELRVCHKLT-AKLNREVVLGSSSLDDPPQFITKLKML 567
+ +E+R +++T A EV++GS+ + P + + LK L
Sbjct: 558 SLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 597
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 160/578 (27%), Positives = 275/578 (47%), Gaps = 66/578 (11%)
Query: 1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
+EA+Y I PT+E+V +D +P Y+ A +FF+ EL + K ST I
Sbjct: 68 LEAVYLITPTEESVKCLXADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKT 126
Query: 60 LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPL 119
L+E+N+ + +SQ F D + ++ + +Q A +IAT+ A+L E+P
Sbjct: 127 LKEINIAFLPYESQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPS 185
Query: 120 VRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQ 179
VRYR+ +A +F LV KL A T P + +LLILDR D
Sbjct: 186 VRYRSDFDENA----SFAQLVQQKLDA-----YRADDPTXGEGPQKDRSQLLILDRGFDP 236
Query: 180 IAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIA 239
I+P++HE T+ A +DLL +E + Y + V + + PE KEVLL+E D +WVE RH HIA
Sbjct: 237 ISPLLHELTFQAXAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEXRHQHIA 294
Query: 240 DASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEI 299
S+ + +K+ F + + + + +DL + ++ PQY +++ K S H+ +
Sbjct: 295 VVSQNVTKKLKQFADEKRXGTAADKA------GIKDLSQXLKKXPQYQKELSKYSTHLHL 348
Query: 300 AGKINRIIRETGLRELGQLEQDLVFG-DAGFKDV------IKFLTAKEDITRENKLRLLM 352
A + ++ + +L ++EQDL G DA + + I + + I+ +K+R+++
Sbjct: 349 AEDCXKQYQQH-VDKLCKVEQDLAXGTDADGEKIRDHXRNIVPILLDQKISAYDKIRIIL 407
Query: 353 IVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHK 412
+ I+ E L++ A + A++ +N+ + LG + G + H
Sbjct: 408 LYI-IHKGGISEENLAKLVQHAHIPAEEKWIINDXQNLGVPIIQDG---GRRKIPQPYHT 463
Query: 413 KKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSAL 472
R R+ + T+Q SR+ P +++ E +++L YP +N P
Sbjct: 464 HNRKERQ----ADHTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNGGGPR--------- 510
Query: 473 TNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSE 532
P+ S R W + D G +S K G R+ +F+VGG + SE
Sbjct: 511 ----PSCQQPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSE 551
Query: 533 LRVCHKL--TAKLNREVVLGSSSLDDPPQFITKLKMLT 568
R +++ TAK N EV+LGS+ + P + L+ ++
Sbjct: 552 XRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 135/591 (22%), Positives = 279/591 (47%), Gaps = 50/591 (8%)
Query: 3 AIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALRE 62
+YFI+PT+EN+ + D + ++P Y+ A +FF SP+ L+ + V + L+E
Sbjct: 70 GVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAV-KYVKTLKE 128
Query: 63 MNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRY 122
+N + + + F ++ L + +G SS D + R++T+ ++ P+VRY
Sbjct: 129 INTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNIDH----LVRRLSTLCTTMNVAPIVRY 184
Query: 123 RAAKS--LDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQI 180
+ + + M + ++ + ++ G+ N ++ + LILDR+VD
Sbjct: 185 SSTSTPGTERMAMQLQKE-IDMSVSQGLINAREGKLKS----------QFLILDRAVDLK 233
Query: 181 APIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD 240
+P++HE TY A +DLLN+E + Y + G ++++V+L E D IW+++RH HI++
Sbjct: 234 SPLVHELTYQAAAYDLLNIENDIYSYST-VDAGGREQQRQVVLGEDDDIWLQMRHLHISE 292
Query: 241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIA 300
++ F + Q S+ G L+++++ LPQ+ EQ+ K SLH++++
Sbjct: 293 VFRKVKSSFDEFCVSARRLQGLRDSQQGEG-GAGALKQMLKDLPQHREQMQKYSLHLDMS 351
Query: 301 GKINRIIRETGLRELGQLEQDLVFGDA-------GFKDVIKFLTAKEDITRENKLRLLMI 353
IN T + + EQ++V + F + + ++ E+KLR LM+
Sbjct: 352 NAINMAFSST-IDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLML 410
Query: 354 VASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKK 413
+ + NL+ A + +A+ N+ +LG + + + K
Sbjct: 411 CV-LAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRG----------RKP 459
Query: 414 KRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALT 473
K R +R + + LSR+ P++++L+E + +L + YP + D S
Sbjct: 460 KTMKRIER---DMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSV 516
Query: 474 NEVPAAHSMRSRRTPTWARPRSSDDGYSSD----SVLKHASSDFKKMGQ-RIFVFIVGGT 528
E + +R+ WA+ + ++ S +V + ++ + + ++FVFI G
Sbjct: 517 EEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTV 576
Query: 529 TRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI 579
+ +E+R ++++ EV +G+ ++ P +F+ + +L + D+Q+
Sbjct: 577 SYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKAD---QDVQV 624
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 160/578 (27%), Positives = 275/578 (47%), Gaps = 81/578 (14%)
Query: 1 MEAIYFIQPTKENVVAFLSDMSGKS-PLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGA 59
M+A+YFI PT ++V FL D KS YK A+++F+ L IK ++ I
Sbjct: 75 MKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIK--ASCSKSIRR 132
Query: 60 LREMNLEYFAVDSQGFVTDDERALEELFG-DEESSQKADACLNVMATRIATVFASLREFP 118
+E+N+ + +SQ + D A + D ++ + + + MA +I TV A+L E P
Sbjct: 133 CKEINISFIPQESQVYTLDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENP 192
Query: 119 LVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSET-CELLILDRSV 177
VRY++ K LD + LV KL YK + +T +LLI+DR
Sbjct: 193 GVRYKS-KPLD--NASKLAQLVEKKLED-------YYKIDEKGLIKGKTQSQLLIIDRGF 242
Query: 178 DQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAH 237
D ++ ++HE T+ A+ +DLL +E + Y + KTDG ++KE +LEE D +WV +RH H
Sbjct: 243 DPVSTVLHELTFQAMAYDLLPIENDTYKY----KTDG--KEKEAVLEEDDDLWVRVRHRH 296
Query: 238 IADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHV 297
IA E + + M S KA + S L +L++ +P + +QI K +H+
Sbjct: 297 IAVVLEEIPKLMKEISSTKKATE--------GKTSLSALTQLMKKMPHFRKQISKQVVHL 348
Query: 298 EIAGK-INRIIRETGLRELGQLEQDLVFG-DAGFKDV----IKFLTAKEDITRENKLRLL 351
+A +N+ + + +L + EQDL G DA + V + L + +N ++
Sbjct: 349 NLAEDCMNKF--KLNIEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIR 406
Query: 352 MIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIH 411
++ I+ E+ L+ + DD + N LG +
Sbjct: 407 AVLLYIFGINGTTEENLDRLIHNVKIEDDSDMIRNWSHLGVPIVPP-------------S 453
Query: 412 KKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSA 471
++ + RKDRS EET+QLSR+ P I++++E N L ++P + ++G+
Sbjct: 454 QQAKPLRKDRS-AEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGS---- 508
Query: 472 LTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRS 531
A S R +PR++ + D +K G R+ +F++GG T S
Sbjct: 509 ------GAVSARQ-------KPRTN-----------YLELD-RKNGSRLIIFVIGGITYS 543
Query: 532 ELRVCHKLT-AKLNREVVLGSSSLDDPPQFITKLKMLT 568
E+R ++++ A + EV++GS+ + P + + +KML
Sbjct: 544 EMRCAYEVSQAHKSCEVIIGSTHILTPRKLLDDIKMLN 581
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 152/339 (44%), Gaps = 31/339 (9%)
Query: 3 AIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVL---PRIGA 59
AIYF+ PTKEN+ ++D+ KS Y + ++ F+S + R L+ + + ++ +I
Sbjct: 103 AIYFVSPTKENIDIIVNDL--KSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQ 160
Query: 60 LREMNLEYFAVDSQGFVTDDERALEELFGDEESSQK--ADACLNVMATRIATVFASLREF 117
+ + L++ + + F + A L D +++++ C N+ TV ++
Sbjct: 161 VYDQYLDFIVTEPELFSLEISNAYLTL-NDPKTTEEEITGLCANIADGLFNTVL-TINSI 218
Query: 118 PLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSV 177
P++R AAK A I + + TKL V N T+Q E L+ILDR++
Sbjct: 219 PIIR--AAKGGPAEIIA---EKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNI 273
Query: 178 DQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDG-------PPEKKEVLLEEHDPIW 230
D + H W Y D+ L N + SK +G P K+ +E +D W
Sbjct: 274 DFASXFSHSWIYQCXVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFW 333
Query: 231 VELRHAHIADASERLHEKMTGFVSKNKAAQI--QNGSRD------GSNLSTRDLQKLVQA 282
E H +A+E + + + K +AA+I + G + SN T +Q++V+
Sbjct: 334 XENSHLPFPEAAENVEAALNTY--KEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKK 391
Query: 283 LPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQD 321
LP+ + + + + H I + + L ++EQD
Sbjct: 392 LPELTAKKNTIDTHXNIFAALLSQLESKSLDTFFEVEQD 430
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 3 AIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISR 41
A+YF+ PT+EN+ D+ + LY+ ++ F S ISR
Sbjct: 95 AVYFVMPTEENIDRLCQDLRNQ--LYESYYLNFISAISR 131
>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1
pdb|4B8B|B Chain B, N-Terminal Domain Of The Yeast Not1
Length = 603
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 184 IHEWTYDAICHDLLNLEGNKYVHEVPSKT 212
+H+W+ C DLLN EG + V E T
Sbjct: 161 LHKWSVQNGCFDLLNAEGTRKVSETIPNT 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,482,269
Number of Sequences: 62578
Number of extensions: 676339
Number of successful extensions: 1725
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 12
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)