Query 008045
Match_columns 579
No_of_seqs 130 out of 974
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 18:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 1.8E-91 3.9E-96 728.6 48.7 509 1-566 67-583 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 3.2E-81 6.9E-86 698.3 43.6 497 1-564 44-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 1.7E-76 3.8E-81 595.7 41.9 471 1-566 66-547 (549)
4 KOG1302 Vacuolar sorting prote 100.0 2.6E-75 5.6E-80 609.8 38.5 489 2-564 80-599 (600)
5 COG5158 SEC1 Proteins involved 100.0 1.1E-72 2.4E-77 600.4 44.0 500 1-570 68-580 (582)
6 KOG1301 Vesicle trafficking pr 100.0 9.9E-71 2.2E-75 560.6 37.6 499 1-570 84-617 (621)
7 PF14071 YlbD_coat: Putative c 61.1 10 0.00022 33.2 3.5 14 221-234 32-45 (124)
8 PRK05581 ribulose-phosphate 3- 51.0 20 0.00044 34.6 4.3 44 520-567 171-214 (220)
9 PRK08883 ribulose-phosphate 3- 43.7 32 0.00069 33.6 4.3 44 519-566 167-210 (220)
10 PLN02334 ribulose-phosphate 3- 39.4 33 0.00072 33.6 3.8 44 520-567 175-218 (229)
11 cd00564 TMP_TenI Thiamine mono 38.4 37 0.0008 31.7 3.8 45 519-567 150-194 (196)
12 PRK00043 thiE thiamine-phospha 33.6 46 0.001 31.8 3.7 43 520-566 161-203 (212)
13 TIGR01163 rpe ribulose-phospha 29.5 74 0.0016 30.2 4.4 44 520-567 166-209 (210)
14 PRK10039 hypothetical protein; 28.1 1.2E+02 0.0025 26.9 4.7 41 525-565 80-125 (127)
15 TIGR00693 thiE thiamine-phosph 27.7 75 0.0016 30.0 4.0 42 520-565 153-194 (196)
16 PTZ00170 D-ribulose-5-phosphat 24.9 83 0.0018 30.8 3.8 44 519-566 173-216 (228)
17 PF12327 FtsZ_C: FtsZ family, 24.3 1.3E+02 0.0028 25.1 4.3 37 516-552 35-76 (95)
18 PRK08745 ribulose-phosphate 3- 23.2 1.3E+02 0.0028 29.5 4.7 45 518-566 170-214 (223)
19 TIGR03128 RuMP_HxlA 3-hexulose 22.1 1.2E+02 0.0025 29.0 4.1 43 519-565 158-200 (206)
20 cd00429 RPE Ribulose-5-phospha 21.8 1.3E+02 0.0029 28.4 4.5 43 520-566 167-209 (211)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-91 Score=728.60 Aligned_cols=509 Identities=42% Similarity=0.679 Sum_probs=437.1
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCCc
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 80 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~p 80 (579)
|+|||||+||.+||++++.||+...|+|+.+||||+..||+.+++.+.+ ..+...|+++++++++|+|+|+++|+++.|
T Consensus 67 meaIY~i~pt~~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~ 145 (593)
T KOG1300|consen 67 MEAIYFITPTEESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSP 145 (593)
T ss_pred ceeEEEecCchhhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecCh
Confidence 7899999999999999999997667899999999999999999999974 456788999999999999999999999999
Q ss_pred chhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcC
Q 008045 81 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 160 (579)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~ 160 (579)
++|..+|.+. +......+++.+|++|++||.++|++|.|||++.....|+ .+|+++|+++++.++.|+.+..
T Consensus 146 ~~~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as-------~l~~~va~~l~~~~~~~~~~~~ 217 (593)
T KOG1300|consen 146 DAFLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNAS-------ELAQKVAAKLWDAYKAYKPSIG 217 (593)
T ss_pred hhHHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHH-------HHHHHHHHHHHHHHHhcccccC
Confidence 9999999976 5666788999999999999999999999999988655542 6899999999999999987667
Q ss_pred CCCCCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcchHHH
Q 008045 161 NFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIAD 240 (579)
Q Consensus 161 ~~~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~ 240 (579)
++|+.+++.|||+||++|+++|+||+||||||+||+++|++|+|.++.+...|++ +|+++|+++|++|.++||+||++
T Consensus 218 ~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIad 295 (593)
T KOG1300|consen 218 NGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIAD 295 (593)
T ss_pred CCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHH
Confidence 7888789999999999999999999999999999999999999999987665533 78899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhH
Q 008045 241 ASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQ 320 (579)
Q Consensus 241 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq 320 (579)
|.+.|.+.+++|.++++.... ..+..++.|+.+||++||+|+++..+++.|++||++|++.++. .|.+++.+||
T Consensus 296 vse~l~~~~k~f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQ 369 (593)
T KOG1300|consen 296 VSERLTKKMKNFSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQ 369 (593)
T ss_pred HHHHHHHHHHHHHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999998764433 2335789999999999999999999999999999999999988 9999999999
Q ss_pred hhhcCC-CchHHHH-------HHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 008045 321 DLVFGD-AGFKDVI-------KFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGG 392 (579)
Q Consensus 321 ~i~~~~-~~~~~~~-------e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~~lg~ 392 (579)
++++|. ...+.+. +.+. ...+...||+|++++|.+. .+|+.+..+.+|+++.|++.++...+.++..+|.
T Consensus 370 DLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~ 447 (593)
T KOG1300|consen 370 DLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGV 447 (593)
T ss_pred HHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCC
Confidence 999994 3333333 3333 4678999999999999998 5899999999999999999999999999999998
Q ss_pred cccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCCCCCC
Q 008045 393 ALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSAL 472 (579)
Q Consensus 393 ~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~ 472 (579)
.... +.|...|. .+.++++. .+.+|.+|||+|.++.|+|++++++||++.|||+++++....|.
T Consensus 448 ~~~~-----~~~~~k~~-----~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~----- 511 (593)
T KOG1300|consen 448 PVTK-----DSFLLKFD-----PPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS----- 511 (593)
T ss_pred cccc-----CcccccCC-----CCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC-----
Confidence 7652 23333222 22255664 78899999999999999999999999999999998775211111
Q ss_pred CCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccC
Q 008045 473 TNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSS 552 (579)
Q Consensus 473 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT 552 (579)
...++|++.|.+++... .+...++++||||+||+||+|+|++|+++++.+++|+||||
T Consensus 512 --------~~~Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~ 569 (593)
T KOG1300|consen 512 --------AATSARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSD 569 (593)
T ss_pred --------ccccccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCc
Confidence 11223334555433321 12357899999999999999999999999999999999999
Q ss_pred cccChhHHHHHHhc
Q 008045 553 SLDDPPQFITKLKM 566 (579)
Q Consensus 553 ~i~~~~~fl~~l~~ 566 (579)
+|+||.+||+.|+.
T Consensus 570 ~iltP~~fL~~lk~ 583 (593)
T KOG1300|consen 570 HILTPTKFLDDLKL 583 (593)
T ss_pred ccCCHHHHHHHHhh
Confidence 99999999999993
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=3.2e-81 Score=698.27 Aligned_cols=497 Identities=30% Similarity=0.538 Sum_probs=372.6
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCCc
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 80 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~p 80 (579)
++|||||+|+.+|+++|++|+++ |.|++|||+|++.+++..++.|++ .++.++|.++.|+++||+|+|+|+|+|++|
T Consensus 44 ~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~~~~~~~~~~l~~-~~~~~~i~~i~e~~~~~~pld~d~fsl~~~ 120 (564)
T PF00995_consen 44 MDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTPRVSESLLEILAE-SGVLGRIKSIKEFNLDFIPLDSDLFSLEIP 120 (564)
T ss_dssp SEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS---HHHHHHHHH-SCGGGGEEEEEETT--SEEECTTEEEES-T
T ss_pred cceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEehhhhhHHHHhhhh-cCccceecccccceeEEEEccchhhhhccc
Confidence 47999999999999999999976 899999999999999999999986 558899988999999999999999999999
Q ss_pred chhhhhcC-CCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHh----
Q 008045 81 RALEELFG-DEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKY---- 155 (579)
Q Consensus 81 ~~~~~l~~-~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~---- 155 (579)
++|..+|. +.+ .+.++.+|++|+++|.++|.+|.|||+|+. .|+++|+.+.+.+.+.
T Consensus 121 ~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~~p~I~~~g~~-------------~a~~v~~~l~~~~~~~~~~~ 182 (564)
T PF00995_consen 121 NSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGEIPNIRYKGNS-------------NAKRVAELLQKKLQENEDNF 182 (564)
T ss_dssp CHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT---EEEE-TTC-------------HHHHHHHHHHHHHHHHHTTH
T ss_pred chHHHHhccccc-----hhHHHHHHHHHHHHHHHhCCCCeEEEeCch-------------hHHHHHHHHHHHhhhccccc
Confidence 99999998 665 789999999999999999999999999882 3455666665555542
Q ss_pred hhhcCCCC---CCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHH
Q 008045 156 KQTIQNFP---MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVE 232 (579)
Q Consensus 156 ~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~ 232 (579)
....+.++ ..++++|||+||++|++||||||||||||+||+|||++|.|+++.+...+ ..++++.|+++|++|++
T Consensus 183 ~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~ 260 (564)
T PF00995_consen 183 SSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNE 260 (564)
T ss_dssp CHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHH
T ss_pred cccccccCCccccCCceEEEecccccccchhhcCceeeeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHH
Confidence 22223332 12358999999999999999999999999999999999999998754332 12478999999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008045 233 LRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGL 312 (579)
Q Consensus 233 ~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l 312 (579)
+||+||++|+..|.++++++++++ .. ...+..++++|+++|++||+++++++.+++|++|+++|++.+++++|
T Consensus 261 ~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l 333 (564)
T PF00995_consen 261 IRHLHFSEVGEKLNKKAKELKEEY-EK------SRSKSKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNL 333 (564)
T ss_dssp HTTSBCHHHHHHHHHHHHHHHHHC-H----------STTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhCHHHHHHHHHHHHHHHHHhh-cc------ccchhhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999653 10 13467899999999999999999999999999999999999999999
Q ss_pred hHHHHHhHhhhcCCCch----HHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCch---HHHHHHHHcCCCHHHHHHHH
Q 008045 313 RELGQLEQDLVFGDAGF----KDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGE---KGLNLMKLAKLTADDMTAVN 385 (579)
Q Consensus 313 ~~~~~~Eq~i~~~~~~~----~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~---~~~~l~q~~g~~~~~~~~l~ 385 (579)
.+++++||++++|.+.. +.+.++|. +...+..++|||+|||+++. |++.. .+++++.+.|++.+++.++.
T Consensus 334 ~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~d~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~ 410 (564)
T PF00995_consen 334 DELIELEQDIASGEDSDGELLQYIEELIN-SRKISIEDKLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLN 410 (564)
T ss_dssp HHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHHHHHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHH
T ss_pred HHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHHHHHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHH
Confidence 99999999999987543 24888885 46899999999999999993 55543 45666666666669999999
Q ss_pred HHHHhcccccccCccCCCCccchhhhhhcccc------cccCCCCCcccccccchHHHHHHHHHHhcCCCC-CCCCCCcc
Q 008045 386 NMRLLGGALESKKSTIGAFSLKFDIHKKKRAA------RKDRSGGEETWQLSRFYPMIEELVEKLGKNELS-KDDYPCMN 458 (579)
Q Consensus 386 ~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~------~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~-~~~~p~i~ 458 (579)
+|+++|+...+.++ ..|... ++.++.+ .....+.+.+|+|+||+|+++|+|+.+.+++++ ++.||++.
T Consensus 411 ~L~~~g~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~ 485 (564)
T PF00995_consen 411 NLEKLGLLKSKDNS--SNFQSI---RKKLNLISKFNDKNDKNNPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLD 485 (564)
T ss_dssp HGGGGTHHCBSHTT--S--CTT---C-TT---HHTTCCCSSSSCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSS
T ss_pred HHHHhcchhhccCc--cchhhh---cccccccccccccccccccccccchhcccccHHHHHHHHHhhccCCccccccccc
Confidence 99999998764210 012111 1222221 111246789999999999999999999999997 88999986
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHH
Q 008045 459 DPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHK 538 (579)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~ 538 (579)
.......|. ..++++.+ +.|.+.. ....+.+++||||||||||+|+|+||+
T Consensus 486 ~~~~~~~~~-----------~~~~~~~~-~~~~~~~-----------------~~~~~~~~viVf~vGGvTy~Ei~~l~~ 536 (564)
T PF00995_consen 486 PKPKNLNGS-----------SFSLRSSK-PSRSKTQ-----------------PSNKPRKRVIVFFVGGVTYSEIRALRE 536 (564)
T ss_dssp TCC-----S-----------SSSSS-------------------------------S-SSEEEEEEETEBEHHHHHHHHH
T ss_pred ccccccCCC-----------Cccccccc-ccccccc-----------------cccCCCCEEEEEEEcCCcHHHHHHHHH
Confidence 543111111 01222211 1111100 011457889999999999999999999
Q ss_pred HHhhCC--CeEEEccCcccChhHHHHHH
Q 008045 539 LTAKLN--REVVLGSSSLDDPPQFITKL 564 (579)
Q Consensus 539 l~~~~~--~~i~igsT~i~~~~~fl~~l 564 (579)
++++.+ ++|+||||+|+||++||++|
T Consensus 537 l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 537 LSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp HHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred HHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 999988 99999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-76 Score=595.71 Aligned_cols=471 Identities=25% Similarity=0.436 Sum_probs=384.0
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCCc
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 80 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~p 80 (579)
+.||+|||||++||+.+++++++ |+|..|||||||.+|+..++.||+ ++...-|+.|+|+++||+++++++|||+.|
T Consensus 66 LkcvvfiRPT~eniq~L~~ELrn--Pry~~Y~lyFsN~i~ks~le~LAe-sD~~E~V~eVqE~y~Df~~~n~~Lfsln~p 142 (549)
T KOG1299|consen 66 LKCVVFIRPTPENIQLLIEELRN--PRYGEYHLYFSNIISKSDLERLAE-SDEQEVVREVQEIYLDFFKVNPDLFSLNIP 142 (549)
T ss_pred ceEEEEeccChHHHHHHHHHhcC--CcceeEEEEEeccCCHHHHHHHHh-cchHHHHHHHHHHHHhhhccCCceeecCCc
Confidence 47999999999999999999965 999999999999999999999996 445777889999999999999999999999
Q ss_pred chhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcC
Q 008045 81 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 160 (579)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~ 160 (579)
++|..... |....++++.+||.+++.+++..|.|||++++ ..|+++|+.+...|.+ +.+..
T Consensus 143 ~~~~~~~~------w~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lF 203 (549)
T KOG1299|consen 143 HIFESSLN------WDPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLF 203 (549)
T ss_pred hhhccccc------cChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhc
Confidence 99876422 12678899999999999999999999998873 4688899988888876 45567
Q ss_pred CCCCCC-CeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecC-CCchHHHHhhcchH
Q 008045 161 NFPMSE-TCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLE-EHDPIWVELRHAHI 238 (579)
Q Consensus 161 ~~~~~~-~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~-~~D~i~~~~R~~~~ 238 (579)
+|+.++ .|+|||+||+.|++||||+|||||||+||++||++|.|.+... .+.+.+.++++|+ .+|+||+..++.+|
T Consensus 204 dfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~~--~~~~kd~~evvLS~~~D~Ff~~nmy~Nf 281 (549)
T KOG1299|consen 204 DFRRTDSPPLLLILDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSKV--PSIPKDLEEVVLSSEQDPFFKNNMYANF 281 (549)
T ss_pred ccccCCCCCeEEEEecCCCCCchhhhHHHHHHHHHHHhccccCEEeeccC--CCCccccceeeeccccchHHHhhhhhhH
Confidence 777644 6899999999999999999999999999999999999999762 2333445677776 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 008045 239 ADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQL 318 (579)
Q Consensus 239 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~ 318 (579)
+|++..|++.+.+|+.+.+ .+.+..++.||+.|+..+|+++++...++.|+.+..++++..+.++|.+++|+
T Consensus 282 gEiG~~IK~lv~~fq~k~~--------~~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEv 353 (549)
T KOG1299|consen 282 GEIGSNIKQLVSEFQFKTK--------TNSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEV 353 (549)
T ss_pred HHHHHHHHHHHHHHHHhhh--------hchhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999987432 13456799999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCCch---HHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHH---cCCCHHHHHHHHHHHHhcc
Q 008045 319 EQDLVFGDAGF---KDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKL---AKLTADDMTAVNNMRLLGG 392 (579)
Q Consensus 319 Eq~i~~~~~~~---~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~---~g~~~~~~~~l~~L~~lg~ 392 (579)
||+++++.+.. .++.++|. +.+++..|++||+|||+|.| +..++.+..++++. -|- ..-..+..|.++++
T Consensus 354 EQ~l~c~~~~~~~~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~-e~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G 429 (549)
T KOG1299|consen 354 EQNLACNGDHGADFNDIKKLLQ-NEKVSEIDRLRLVALYALRY-ERHPPNELRQLPQILREQGP--KKPELVPFLLKYAG 429 (549)
T ss_pred HHHHHhcCcchhhHHHHHHHHc-CCcccHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcC
Confidence 99999976543 45666777 57899999999999999998 45666677666544 332 12233444445555
Q ss_pred cccccCccCCCCccc--hhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCCCC
Q 008045 393 ALESKKSTIGAFSLK--FDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPS 470 (579)
Q Consensus 393 ~~~~~~~~~~~~~~~--f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~ 470 (579)
...+.. --|+.. +.+. ++.. +..++.++. |.+|.|+++++++++.+|+|++..||++....
T Consensus 430 ~~~R~~---dlf~~~~~v~i~--R~~~-kglkgvENV--ytQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~--------- 492 (549)
T KOG1299|consen 430 LHVRQG---DLFGPNDLVPIA--RRFI-KGLKGVENV--YTQHQPLLKSTLEDLFRGRLKEIDYPFLGSQT--------- 492 (549)
T ss_pred cccccc---cccCcchhHHHH--HHHh-hccCcchhh--hhccCHHHHHHHHHHHhcccccCCCccccccc---------
Confidence 443221 122221 1111 1111 222344454 57999999999999999999988899885210
Q ss_pred CCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHh-hCCCeEEE
Q 008045 471 ALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTA-KLNREVVL 549 (579)
Q Consensus 471 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~-~~~~~i~i 549 (579)
...+++.|||||+||+||+|.|.++++.. ..|.+|++
T Consensus 493 ------------------------------------------s~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvL 530 (549)
T KOG1299|consen 493 ------------------------------------------SRDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVL 530 (549)
T ss_pred ------------------------------------------ccCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEE
Confidence 01357899999999999999999999975 46899999
Q ss_pred ccCcccChhHHHHHHhc
Q 008045 550 GSSSLDDPPQFITKLKM 566 (579)
Q Consensus 550 gsT~i~~~~~fl~~l~~ 566 (579)
|+|.|+|.+.|++.+..
T Consensus 531 gGttvlntk~f~~di~~ 547 (549)
T KOG1299|consen 531 GGTTVLNTKSFIDEIMA 547 (549)
T ss_pred cceEEechHHHHHHHhc
Confidence 99999999999999864
No 4
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-75 Score=609.83 Aligned_cols=489 Identities=19% Similarity=0.322 Sum_probs=391.4
Q ss_pred cEEEEecCCHHHHHHHHHhhcC--CCCCcceEEEEecCCCCH--HHHHHHHhCCCcccccceeEEEecceeecCCCceEe
Q 008045 2 EAIYFIQPTKENVVAFLSDMSG--KSPLYKKAFVFFSSPISR--ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVT 77 (579)
Q Consensus 2 ~aIY~i~Pt~~si~~i~~d~~~--~~~~Y~~~~l~Ft~~~~~--~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL 77 (579)
..|||+||+.++++.|+.++++ +...-+.||++| +|+ .+++.+.++.++++.+ .+.|+.++++|+|.|++||
T Consensus 80 ~~vy~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSl 155 (600)
T KOG1302|consen 80 QVVYFVRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSL 155 (600)
T ss_pred eEEEEEcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhc
Confidence 4799999999999999999975 335688999999 665 3578888889999888 8999999999999999999
Q ss_pred CCcchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhh
Q 008045 78 DDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ 157 (579)
Q Consensus 78 ~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~ 157 (579)
+.|++|.++|.++| .+.+..+|++|.+++.++|.+|.|+..|+ .|+++++++.+..+
T Consensus 156 El~~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~ 212 (600)
T KOG1302|consen 156 ELPNSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLER 212 (600)
T ss_pred cchHHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhh
Confidence 99999999999988 78899999999999999999999999988 45666666665544
Q ss_pred hcC--CCCC-CCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCC----CC----CCCcceeEecCCC
Q 008045 158 TIQ--NFPM-SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSK----TD----GPPEKKEVLLEEH 226 (579)
Q Consensus 158 ~~~--~~~~-~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~----~g----~~~~~k~~~l~~~ 226 (579)
+.. +.+. ++.++||++||++|++||||||+||+||+||+|||.+|.|+++.+.. .| +....+.+.++..
T Consensus 213 e~~t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~ 292 (600)
T KOG1302|consen 213 EEATENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSS 292 (600)
T ss_pred ccccccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcH
Confidence 321 2222 45789999999999999999999999999999999999999876321 11 2234566777899
Q ss_pred chHHHHhhcchHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHH
Q 008045 227 DPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRI 306 (579)
Q Consensus 227 D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~ 306 (579)
|+||+++|++||+.|+..+++++++++..++. +.+.++++||++||++||.++++++.++.|+++|+.+++.
T Consensus 293 deIy~eiR~k~f~~v~~~lsk~ak~l~~~~~~--------r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~ 364 (600)
T KOG1302|consen 293 DEIYAEIRNKHFNAVGPLLSKKAKELQAQYET--------RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQH 364 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886642 3568899999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHhHhhhcCCCchHHHHHHhhh--cCCCChhhHHHHHHHHHHhCCCCCCchHH----HHHHHHcCCCHHH
Q 008045 307 IRETGLRELGQLEQDLVFGDAGFKDVIKFLTA--KEDITRENKLRLLMIVASIYPEKFEGEKG----LNLMKLAKLTADD 380 (579)
Q Consensus 307 ~~~~~l~~~~~~Eq~i~~~~~~~~~~~e~i~~--~~~~~~~dklRLl~L~~l~~~~g~~~~~~----~~l~q~~g~~~~~ 380 (579)
+....|.+++.+||+++.|.+..++ .++|++ ....+...+|||+||.|++. +|++++++ +.++|.||+ ++
T Consensus 365 v~~~~f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--eh 440 (600)
T KOG1302|consen 365 VKNEDFRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EH 440 (600)
T ss_pred HhhHHHHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HH
Confidence 9999999999999999999876544 444433 34789999999999999997 79998765 568999999 99
Q ss_pred HHHHHHHHHhcccccccCccC-------CCCccchhhhhhcccccc---cCCCCCcccccccchHHHHHHHHHHhcCCCC
Q 008045 381 MTAVNNMRLLGGALESKKSTI-------GAFSLKFDIHKKKRAARK---DRSGGEETWQLSRFYPMIEELVEKLGKNELS 450 (579)
Q Consensus 381 ~~~l~~L~~lg~~~~~~~~~~-------~~~~~~f~~~k~~~~~~~---~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~ 450 (579)
+.+|.||+++|++..+...+. ..|+.+ .+..+++.. +.+|+|++|+||||+|+++||+|++++...-
T Consensus 441 l~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~---~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w 517 (600)
T KOG1302|consen 441 LLTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTW---ANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGW 517 (600)
T ss_pred HHHHHHHHHcCCcccccCCCcchhhHHHHHHHHH---HhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccch
Confidence 999999999999987542210 022222 233333332 3369999999999999999999999998533
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCH
Q 008045 451 KDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTR 530 (579)
Q Consensus 451 ~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy 530 (579)
++.|-.+..-+ |..+.. .+|.+.. .. .++-++ ...+.++|||+||+||
T Consensus 518 ~~~~~~i~~l~----g~~~e~----------------~~~~~~~-----~~----~~~~~~---g~~R~~lVff~GG~T~ 565 (600)
T KOG1302|consen 518 QELYSKIRNLP----GPHFEE----------------VTWTPSD-----IA----SKNNSP---GALRVTLVFFLGGCTY 565 (600)
T ss_pred hhhHHHHccCC----CCchhh----------------cccChhh-----hc----ccccCC---CCcceEEEEEECCccH
Confidence 33443232111 111100 1121110 00 000001 1467899999999999
Q ss_pred HHHHHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 008045 531 SELRVCHKLTAKLNREVVLGSSSLDDPPQFITKL 564 (579)
Q Consensus 531 ~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l 564 (579)
+||||+|+|++..|++|+|+||+++|+.++|+.+
T Consensus 566 ~EIAalr~l~~~~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 566 AEIAALRFLAKLEGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred HHHHHHHHHHhhcCceEEEEeccccchHHHHHhh
Confidence 9999999999999999999999999999999976
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-72 Score=600.41 Aligned_cols=500 Identities=25% Similarity=0.401 Sum_probs=386.1
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCCc
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 80 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~p 80 (579)
++|||||+||.+|++.|++|+.+..|.|..||+.|++.+...+++.+++ .+....|..|.++++||+++|+++|++++|
T Consensus 68 ~~aiy~v~pt~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p 146 (582)
T COG5158 68 LPAIYFVRPTKENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLP 146 (582)
T ss_pred CCEEEEEcCchHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCc
Confidence 4799999999999999999998656899999999999999988888875 677888999999999999999999999999
Q ss_pred chhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcC
Q 008045 81 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 160 (579)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~ 160 (579)
..|..++.+.. ...+..++.+|+++|.++|.+|.|||.+++ .|.++|+.+-..+........
T Consensus 147 ~~~~~~~~~~~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~ 208 (582)
T COG5158 147 ESFLESSLPST-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINF 208 (582)
T ss_pred hhhhhhcCCCc-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhc
Confidence 99988887653 234448999999999999999999998763 345555555444443322222
Q ss_pred CCC---CCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcch
Q 008045 161 NFP---MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAH 237 (579)
Q Consensus 161 ~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~ 237 (579)
++. .+.+++|||+||+.|++|||+|+||||||+||++++++|.|+++.....| ++++...++.+|+||.++||+|
T Consensus 209 ~~~~~~~~~~~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~ 286 (582)
T COG5158 209 DGVVSKNPLRPILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLN 286 (582)
T ss_pred ccccccCCCCceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCc
Confidence 221 12478999999999999999999999999999999999999998655544 4456566678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 008045 238 IADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQ 317 (579)
Q Consensus 238 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~ 317 (579)
|++|++.|.+.+++|+.+++ ... .....++.+|++||.+||++++.++.|.+|++|+++|++.+++++|+++.+
T Consensus 287 f~~v~e~l~~~~~~l~~~~~--~~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~e 360 (582)
T COG5158 287 FGEVGEKLKKLAKELKTKAQ--LRH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSE 360 (582)
T ss_pred hhhHHHHHHHHHHHHHHHHh--hhh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764 222 123479999999999999999999999999999999999999999999999
Q ss_pred HhHhhhcCCCchHHHHHHhhhc-CCCChhhHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 008045 318 LEQDLVFGDAGFKDVIKFLTAK-EDITRENKLRLLMIVASIYPEKF-EGEKGLNLMKLAKLTADDMTAVNNMRLLGGALE 395 (579)
Q Consensus 318 ~Eq~i~~~~~~~~~~~e~i~~~-~~~~~~dklRLl~L~~l~~~~g~-~~~~~~~l~q~~g~~~~~~~~l~~L~~lg~~~~ 395 (579)
+||++.++.+...++.++|... ......+||||+|||+++. +|+ .+.+..+++..-|++.+++..+..|+.+|....
T Consensus 361 IEq~l~~~~~~~~~i~Dli~~l~~~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~ 439 (582)
T COG5158 361 IEQNLSTGNDVKSDISDLIELLESGVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTL 439 (582)
T ss_pred HHHhhhcCCcchhhHHHHHHHHhcCchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhh
Confidence 9999999875443444444431 1222236999999999997 564 233445666667888899999999999988743
Q ss_pred ccCccC----CC---CccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045 396 SKKSTI----GA---FSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468 (579)
Q Consensus 396 ~~~~~~----~~---~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~ 468 (579)
+..... +. .+.+|+ ....-+..+...+..++|++|.|..+++...++.+++.+..+..+..
T Consensus 440 ~~~~~~s~~~g~~d~l~~~~n---~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~--------- 507 (582)
T COG5158 440 KDSKTISLKRGDKDSLFQWFN---TYSLSREHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQ--------- 507 (582)
T ss_pred hcccccccccCCcccccCccc---ccccccccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhcc---------
Confidence 221100 11 111111 01110011245667889999999999999999998865444432220
Q ss_pred CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhCC-CeE
Q 008045 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REV 547 (579)
Q Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~~-~~i 547 (579)
+.+..+ +.| +.+. . ...+.++++|||+||+||.|++++++++++.+ ++|
T Consensus 508 ------------s~~~~~-~k~-~~~~---------~-------~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~i 557 (582)
T COG5158 508 ------------SLRLSR-PKG-RSRS---------N-------KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRI 557 (582)
T ss_pred ------------ceeecc-ccc-cccc---------c-------cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeE
Confidence 112111 122 1111 0 01367899999999999999999999999988 999
Q ss_pred EEccCcccChhHHHHHHhccCCC
Q 008045 548 VLGSSSLDDPPQFITKLKMLTAH 570 (579)
Q Consensus 548 ~igsT~i~~~~~fl~~l~~l~~~ 570 (579)
++|||.|+||.+||+++..++..
T Consensus 558 i~Gst~iltp~e~l~~v~~~~~~ 580 (582)
T COG5158 558 IYGSTEILTPAEFLDEVKRLGGS 580 (582)
T ss_pred EEcCCceecHHHHHHHHHHhccc
Confidence 99999999999999999988643
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-71 Score=560.59 Aligned_cols=499 Identities=23% Similarity=0.368 Sum_probs=390.9
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHh---CCCcccccceeEEEecceeecCCCceEe
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLEYFAVDSQGFVT 77 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~---~~~~~~~i~~i~e~~~dfipld~~lfsL 77 (579)
++|||||+||.||+++|++|+++ .+|.+||++|++++|+..+|.||. +.|...+|++|.+.+++|+.+++|+|+|
T Consensus 84 VPAVYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL 161 (621)
T KOG1301|consen 84 VPAVYFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSL 161 (621)
T ss_pred CCeEEEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhh
Confidence 58999999999999999999975 799999999999999999999985 4688889999999999999999999999
Q ss_pred CCcchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhh
Q 008045 78 DDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ 157 (579)
Q Consensus 78 ~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~ 157 (579)
.++++|..+..++..+...+..++.||++|+++|.++|.+|.|||-.+ .+ .++||++|-+++++.+-..++
T Consensus 162 ~~~~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g--~a-------AEmvA~kL~qKLRd~l~d~k~ 232 (621)
T KOG1301|consen 162 GMQNSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKG--GA-------AEMVARKLDQKLRDNLRDTKN 232 (621)
T ss_pred cccccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCC--CH-------HHHHHHHHHHHHHHHhHhhcc
Confidence 999999888887777778889999999999999999999999998322 22 278999999999998876554
Q ss_pred hcCCCC----CCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHh
Q 008045 158 TIQNFP----MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVEL 233 (579)
Q Consensus 158 ~~~~~~----~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~ 233 (579)
...... .-++|+|+|+||++|++||+.|.||||||+||+|+.+.|.|+++.+.. ...+|.+.|+.+|+||...
T Consensus 233 ~lft~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~~---~~~~k~yDld~~D~fW~~n 309 (621)
T KOG1301|consen 233 NLFTMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESESK---RKKKKSYDLDPNDKFWRRN 309 (621)
T ss_pred cceeccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeecccc---CCCCccccCCCccHHHHhc
Confidence 321111 125899999999999999999999999999999999999999987432 2346789999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHhhhHhhhhc--CCC------CCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHH
Q 008045 234 RHAHIADASERLHEKMTGFVSKNKAAQIQN--GSR------DGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINR 305 (579)
Q Consensus 234 R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~ 305 (579)
.+..|++|++.|.+++.+|+.+. +++++ |.. .+...+...+++.|+.||++.++++.+.+|++||.++++
T Consensus 310 ~~~pFP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~ 387 (621)
T KOG1301|consen 310 KGSPFPEVAENVEEELESYKNEE--AEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLE 387 (621)
T ss_pred CCCCCchHHHHHHHHHHHHHhhH--HHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999999998764 46653 211 111233448999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHhHhhhcCCCchHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHH---HHHHHHcCCCHHHHH
Q 008045 306 IIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKG---LNLMKLAKLTADDMT 382 (579)
Q Consensus 306 ~~~~~~l~~~~~~Eq~i~~~~~~~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~---~~l~q~~g~~~~~~~ 382 (579)
.++++.|+.++++|+++.+ ....+.+++.+.+....+++||||++++|.++.. -.+.+++ +..++..|++.+.+.
T Consensus 388 ~IkeR~lD~ff~~E~~~~~-~~l~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~e-t~~~s~le~~e~al~e~~~d~~Al~ 465 (621)
T KOG1301|consen 388 QIKERKLDDFFEVEKKIMS-TTLDRSLLDILEDGEAGTPEDKLRLFIIYYLSTE-TVPQSDLEAVENALTEAGCDLNALK 465 (621)
T ss_pred HHHHhhhhHHHHHhccccc-ccccHHHHHHHhcccCCChHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhcCCchHHHH
Confidence 9999999999999999988 3334578888876567899999999999999973 4445554 456777899877777
Q ss_pred HHHHHHHhcccccccCccCC---CCc----------cchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCC
Q 008045 383 AVNNMRLLGGALESKKSTIG---AFS----------LKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNEL 449 (579)
Q Consensus 383 ~l~~L~~lg~~~~~~~~~~~---~~~----------~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l 449 (579)
.+.+++.+.-.........+ .+- ..|-+..-++++.+..+ . .+.++||.+..++-
T Consensus 466 yvkr~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~q~-----l-------PvT~iveal~~~~s 533 (621)
T KOG1301|consen 466 YVKRLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKKQN-----L-------PVTRIVEALMDPKS 533 (621)
T ss_pred HHHHHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcCccccc-----C-------cHHHHHHHhhCCCC
Confidence 77776554332221111001 110 11111112222222111 1 37889999987653
Q ss_pred --CCCCCCCccCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcC
Q 008045 450 --SKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGG 527 (579)
Q Consensus 450 --~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGG 527 (579)
..++|.|++ |+..-+|. +++.. ...+.+.+|||||||
T Consensus 534 n~etddYl~~D-Pk~~k~~~------------~~~~~----------------------------~r~~f~eaIVFvVGG 572 (621)
T KOG1301|consen 534 NPETDDYLYFD-PKLSKGGS------------SSLPI----------------------------KRQPFQEAIVFVVGG 572 (621)
T ss_pred CccccceEeec-cccccCCC------------ccccc----------------------------cccchhheEEEEEcC
Confidence 356688885 54321110 01110 113578899999999
Q ss_pred CCHHHHHHHHHHHhhC--CCeEEEccCcccChhHHHHHHhccCCC
Q 008045 528 TTRSELRVCHKLTAKL--NREVVLGSSSLDDPPQFITKLKMLTAH 570 (579)
Q Consensus 528 vTy~Ei~~l~~l~~~~--~~~i~igsT~i~~~~~fl~~l~~l~~~ 570 (579)
.+|-|+..|.+++++. .++|++|+|.|+||.+|++++..||.+
T Consensus 573 GNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~ 617 (621)
T KOG1301|consen 573 GNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLK 617 (621)
T ss_pred cCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhccc
Confidence 9999999999998864 489999999999999999999998854
No 7
>PF14071 YlbD_coat: Putative coat protein
Probab=61.10 E-value=10 Score=33.24 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=12.5
Q ss_pred EecCCCchHHHHhh
Q 008045 221 VLLEEHDPIWVELR 234 (579)
Q Consensus 221 ~~l~~~D~i~~~~R 234 (579)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 46789999999999
No 8
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=51.01 E-value=20 Score=34.57 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=33.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 008045 520 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 567 (579)
Q Consensus 520 iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~l 567 (579)
..|.+.||+|-..++.+.. .|.++++.++.|++.++....++.+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677889999976666655 6899999999999776665554433
No 9
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=43.72 E-value=32 Score=33.64 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 008045 519 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 566 (579)
Q Consensus 519 ~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~ 566 (579)
.+.|.+.||+|-..++.+.+ .|.++++.++.|+..+++-+.++.
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d~~~~i~~ 210 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPDYKAVIDE 210 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHHH
Confidence 47788999999776666554 589999999999866555444443
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=39.36 E-value=33 Score=33.56 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.1
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 008045 520 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 567 (579)
Q Consensus 520 iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~l 567 (579)
+-|.++||+|-.-++.+.. .|.++++.++.|+..++.-+.++.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~----aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE----AGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH----cCCCEEEEChHHhCCCCHHHHHHHH
Confidence 4589999999887777665 5889999999999766655554433
No 11
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=38.44 E-value=37 Score=31.71 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 008045 519 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 567 (579)
Q Consensus 519 ~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~l 567 (579)
.+-|++.||++-..+..+.. .|.+.+..++.++...+....+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 35689999999866665554 4889999999898766666555544
No 12
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.62 E-value=46 Score=31.77 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.2
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 008045 520 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 566 (579)
Q Consensus 520 iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~ 566 (579)
+-|++.||+|-..++.+.. .|.+.+++++.|....+..+.+..
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d~~~~~~~ 203 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAEDPEAAARA 203 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCCHHHHHHH
Confidence 6789999999766665544 589999988999876555444433
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.48 E-value=74 Score=30.25 Aligned_cols=44 Identities=14% Similarity=0.370 Sum_probs=32.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 008045 520 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 567 (579)
Q Consensus 520 iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~l 567 (579)
+-|.+.||+|-.- +.++. +.|.+.++.++.|+++.+.-..++.+
T Consensus 166 ~~i~v~GGI~~en---v~~l~-~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDN---ARELA-EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHH---HHHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 5578999999644 44433 46899999999999887766665543
No 14
>PRK10039 hypothetical protein; Provisional
Probab=28.13 E-value=1.2e+02 Score=26.93 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=28.6
Q ss_pred EcCCCHHHHHHHHHHHhhCC----CeE-EEccCcccChhHHHHHHh
Q 008045 525 VGGTTRSELRVCHKLTAKLN----REV-VLGSSSLDDPPQFITKLK 565 (579)
Q Consensus 525 iGGvTy~Ei~~l~~l~~~~~----~~i-~igsT~i~~~~~fl~~l~ 565 (579)
=||.|--|.|+++|++...+ +.+ +...+.-++-++.++.++
T Consensus 80 EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 80 EGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 39999999999999987532 234 444444577677766654
No 15
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=27.66 E-value=75 Score=29.98 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.3
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 008045 520 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 565 (579)
Q Consensus 520 iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~ 565 (579)
+-|+.+||+|-..++.+. +.|.+.+.+++.|+..++-...++
T Consensus 153 ~pv~a~GGI~~~~~~~~~----~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL----AAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHH----HcCCCEEEEhHHhhCCCCHHHHHH
Confidence 458999999976666554 358999999999988766555444
No 16
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.86 E-value=83 Score=30.83 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 008045 519 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 566 (579)
Q Consensus 519 ~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~ 566 (579)
.+.|-|-||||-..+..+.. .|.+++|.++.|+..++..+.+..
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGad~iVvGsaI~~a~d~~~~~~~ 216 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----AGANVIVAGSSIFKAKDRKQAIEL 216 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----cCCCEEEEchHHhCCCCHHHHHHH
Confidence 36688999999987766654 488999999999866555444443
No 17
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=24.34 E-value=1.3e+02 Score=25.09 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=26.1
Q ss_pred CCceEEEEEEcC--CCHHHHHHHHHH-HhhC--CCeEEEccC
Q 008045 516 MGQRIFVFIVGG--TTRSELRVCHKL-TAKL--NREVVLGSS 552 (579)
Q Consensus 516 ~~~~iiVfviGG--vTy~Ei~~l~~l-~~~~--~~~i~igsT 552 (579)
.-+.++|-|.|| +|+.|+..+-+. .+.. +.+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 457899999998 789999877644 4543 578888865
No 18
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.24 E-value=1.3e+02 Score=29.48 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=33.4
Q ss_pred ceEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 008045 518 QRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 566 (579)
Q Consensus 518 ~~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~ 566 (579)
..+.|-|=|||+-.-++.+.+ .|.+++|+++.|+..++.-+.++.
T Consensus 170 ~~~~IeVDGGI~~eti~~l~~----aGaDi~V~GSaiF~~~d~~~~~~~ 214 (223)
T PRK08745 170 KPIRLEIDGGVKADNIGAIAA----AGADTFVAGSAIFNAPDYAQVIAQ 214 (223)
T ss_pred CCeeEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHH
Confidence 357899999999887766654 589999999999965554444433
No 19
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.06 E-value=1.2e+02 Score=28.96 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 008045 519 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 565 (579)
Q Consensus 519 ~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~ 565 (579)
.+.|.+.||+|..-+..+. +.|.+.++.++.|+..++.-+.++
T Consensus 158 ~~~i~v~GGI~~~n~~~~~----~~Ga~~v~vGsai~~~~d~~~~~~ 200 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI----KLGPDIVIVGGAITKAADPAEAAR 200 (206)
T ss_pred CCcEEEECCcCHHHHHHHH----HcCCCEEEEeehhcCCCCHHHHHH
Confidence 3456779999987766543 368898888888987554433333
No 20
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=21.84 E-value=1.3e+02 Score=28.44 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=31.6
Q ss_pred EEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 008045 520 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 566 (579)
Q Consensus 520 iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~ 566 (579)
+-|++.||+|-.-++.+. +.|.+.++.++.++...+.-..++.
T Consensus 167 ~pi~v~GGI~~env~~~~----~~gad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 167 LLIEVDGGINLETIPLLA----EAGADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred eEEEEECCCCHHHHHHHH----HcCCCEEEECHHHhCCCCHHHHHHH
Confidence 567899999975544433 3578999999999987776666554
Done!