Query 008045
Match_columns 579
No_of_seqs 130 out of 974
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 1.2E-94 4.1E-99 800.5 44.3 506 1-571 71-589 (594)
2 2xhe_A UNC18; exocytosis, exoc 100.0 7.9E-92 2.7E-96 789.1 49.2 535 1-571 68-619 (650)
3 3puk_A Syntaxin-binding protei 100.0 3.7E-93 1.3E-97 788.4 36.2 501 1-575 75-590 (592)
4 1epu_A S-SEC1; parallel beta-s 100.0 1.2E-91 4.1E-96 782.3 46.2 509 1-569 68-590 (591)
5 3c98_A Syntaxin-binding protei 100.0 4.5E-91 1.5E-95 779.4 44.3 506 1-571 83-601 (606)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 2E-81 6.7E-86 706.6 35.8 508 1-572 101-666 (671)
7 1y9j_A SEC1 family domain cont 99.3 9E-13 3.1E-17 119.6 4.8 64 1-66 93-159 (159)
8 3he4_B Synzip5; heterodimeric 47.4 53 0.0018 21.3 5.3 33 271-303 3-35 (46)
9 1tqx_A D-ribulose-5-phosphate 24.1 50 0.0017 31.0 3.4 38 519-560 173-210 (227)
10 1y0e_A Putative N-acetylmannos 23.3 66 0.0023 29.5 4.2 45 519-567 175-220 (223)
11 1h1y_A D-ribulose-5-phosphate 21.2 37 0.0013 31.7 1.9 38 519-560 173-210 (228)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1.2e-94 Score=800.54 Aligned_cols=506 Identities=28% Similarity=0.525 Sum_probs=412.3
Q ss_pred CcEEEEecCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCC
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDD 79 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~ 79 (579)
|+|||||+||.+||++|++||++ ..|+|++|||+|++.+|+.+++.||+ .++.+.|++|.|+++||+|+|+++|||++
T Consensus 71 ~~aIYfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~ 149 (594)
T 1dn1_A 71 LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDS 149 (594)
T ss_dssp SEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCC
T ss_pred CceEEEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecC
Confidence 68999999999999999999974 23799999999999999999999996 56889999999999999999999999999
Q ss_pred cchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhc
Q 008045 80 ERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTI 159 (579)
Q Consensus 80 p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~ 159 (579)
|++|..+|.++.+ .+....++.+|++|+++|.++|.+|.|||+|+. ..|+++|+.|++.|.++...+
T Consensus 150 p~~f~~l~~~~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~ 216 (594)
T 1dn1_A 150 ADSFQSFYSPHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADD 216 (594)
T ss_dssp TTHHHHHHCGGGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHhCCccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccC
Confidence 9999999995432 234789999999999999999999999998773 246789999998898876554
Q ss_pred CCCC---CCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcc
Q 008045 160 QNFP---MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236 (579)
Q Consensus 160 ~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~ 236 (579)
+.++ ..++++|||+||++|++|||+||||||||+||+|||++|.|+++.+. .+..++|++.|+++|++|.++||+
T Consensus 217 ~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~ 294 (594)
T 1dn1_A 217 PTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHK 294 (594)
T ss_dssp TTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTS
T ss_pred ccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhcc
Confidence 4432 23478999999999999999999999999999999999999998632 122346889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG 316 (579)
Q Consensus 237 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~ 316 (579)
||++|+..|.+++++|+++++.. ..+..+++||++||++||+++++++.+++|++||++|++.+++ .|++++
T Consensus 295 ~f~~v~~~l~~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~ 366 (594)
T 1dn1_A 295 HIAEVSQEVTRSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLC 366 (594)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999875421 0235677899999999999999999999999999999999987 899999
Q ss_pred HHhHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045 317 QLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 388 (579)
Q Consensus 317 ~~Eq~i~~~~~~--------~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~ 388 (579)
++||++++|.+. .+.+.++|. +..++..|||||+|||++++ +|++++++.+|++++|++++++.++.||+
T Consensus 367 e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~ 444 (594)
T 1dn1_A 367 RVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMA 444 (594)
T ss_dssp HHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGG
T ss_pred HHHHHHHcCCCcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999998642 134566776 57899999999999999997 69999999999999999999999999999
Q ss_pred HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045 389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468 (579)
Q Consensus 389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~ 468 (579)
++|+...++.. . .|.+.+.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+
T Consensus 445 ~lG~~~~~~~~-------~---~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~-- 511 (594)
T 1dn1_A 445 HLGVPIVTDST-------L---RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS-- 511 (594)
T ss_dssp GGTCCCBCCCG-------G---GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------
T ss_pred HhCCccccccc-------c---ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc--
Confidence 99987543211 0 11222333332 57899999999999999999999999999999999765421100
Q ss_pred CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhC-CCeE
Q 008045 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREV 547 (579)
Q Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~-~~~i 547 (579)
.+..+.|+|+|++.+.+.+ ..+++++||||+||+||+|+|++|++++.. |++|
T Consensus 512 -----------~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~V 565 (594)
T 1dn1_A 512 -----------TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEV 565 (594)
T ss_dssp ----------------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEE
T ss_pred -----------ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceE
Confidence 1112334578987543221 135789999999999999999999999986 4899
Q ss_pred EEccCcccChhHHHHHHhccCCCC
Q 008045 548 VLGSSSLDDPPQFITKLKMLTAHE 571 (579)
Q Consensus 548 ~igsT~i~~~~~fl~~l~~l~~~~ 571 (579)
+||||+|+||.+||++|+.|+++.
T Consensus 566 ilG~t~il~p~~Fl~~l~~l~~~~ 589 (594)
T 1dn1_A 566 LIGSTHILTPQKLLDTLKKLNKTD 589 (594)
T ss_dssp EEEESSEECHHHHHHHHTTTTSCS
T ss_pred EEeeCCcCCHHHHHHHHHHhCCCc
Confidence 999999999999999999998765
No 2
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=7.9e-92 Score=789.14 Aligned_cols=535 Identities=23% Similarity=0.448 Sum_probs=410.3
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCCc
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 80 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~p 80 (579)
++|||||+||.+||++|++||+...|+|+.|||+|++.+|+.++|++|+. ++.+.|++|.|+++||+|+|+|+|||++|
T Consensus 68 ~~aIyfv~Pt~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~ 146 (650)
T 2xhe_A 68 FHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEP 146 (650)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCT
T ss_pred CCEEEEEcCCHHHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCc
Confidence 58999999999999999999975448999999999999999999999974 47888989999999999999999999999
Q ss_pred chhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcC
Q 008045 81 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 160 (579)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~~ 160 (579)
++|..+|.+.. ....++.+|++|+++|.++|.+|.|||+|+.+ ..|+++|+.+++.|.. ..+..
T Consensus 147 ~~~~~l~~~~~----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~-----------~~a~~la~~l~~~l~~-~~~~~ 210 (650)
T 2xhe_A 147 HGLVQYYGSRS----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTST-----------PGTERMAMQLQKEIDM-SVSQG 210 (650)
T ss_dssp THHHHHHSTTG----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCC-----------HHHHHHHHHHHHHHHH-HHTTT
T ss_pred hHHHHhcCCcc----chHHHHHHHHHHHHHHHHcCCCCEEEecCCCc-----------hHHHHHHHHHHHHHHh-hccCC
Confidence 99999996321 15679999999999999999999999988731 2577788888777765 22222
Q ss_pred CC---CCCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcch
Q 008045 161 NF---PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAH 237 (579)
Q Consensus 161 ~~---~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~ 237 (579)
.+ +..++++|||+||++|++|||+||||||||+||+|||++|.|+++.+.. ++..++|++.|+++|+||.++||+|
T Consensus 211 ~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~ 289 (650)
T 2xhe_A 211 LINAREGKLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLH 289 (650)
T ss_dssp SCCCCCCSSCCEEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSB
T ss_pred cccCCCCCCCCEEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccC
Confidence 21 2345789999999999999999999999999999999999999987432 2335568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhc-CCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045 238 IADASERLHEKMTGFVSKNKAAQIQN-GSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG 316 (579)
Q Consensus 238 ~~~v~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~ 316 (579)
|++|+..|.+++++|+++++. .++ ....++..+++||++||++||+|+++++++++|++||++|++.+++ +|++++
T Consensus 290 f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~ 366 (650)
T 2xhe_A 290 ISEVFRKVKSSFDEFCVSARR--LQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCT 366 (650)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999987653 221 0011246789999999999999999999999999999999999999 999999
Q ss_pred HHhHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045 317 QLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 388 (579)
Q Consensus 317 ~~Eq~i~~~~~~--------~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~ 388 (579)
++||++++|.+. .+.+.++|. +...+..|||||+|||++++ +|+++++++++++.||++++++.+|.||+
T Consensus 367 ~~EQ~l~~g~d~~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~ 444 (650)
T 2xhe_A 367 KAEQNIVTEEEQDGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLE 444 (650)
T ss_dssp HHHHHHHHSBCSSCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGG
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999988642 135667776 46889999999999999998 68999999999999999999999999999
Q ss_pred HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045 389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468 (579)
Q Consensus 389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~ 468 (579)
++|+...+.... .+.....+++ ...+|+||||+|+++||||.+++++++++.||++.++.....+.+
T Consensus 445 ~lgl~~~~~~~~----------~~~~~~~rk~---~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~ 511 (650)
T 2xhe_A 445 MLGATVVADRRG----------RKPKTMKRIE---RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKR 511 (650)
T ss_dssp GGTCCCBGGGCC----------CCCCCCCCCC---CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC-
T ss_pred HhCCcccccccc----------cccccccccc---cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccc
Confidence 999986533110 0011111122 223899999999999999999999999999999975432211110
Q ss_pred CCCCCCCCcccccccCCCCCCccCCCCCCCC----CCccccccccc-cccccCCceEEEEEEcCCCHHHHHHHHHHHhhC
Q 008045 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDG----YSSDSVLKHAS-SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL 543 (579)
Q Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~~~~s~~~~~~-~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~ 543 (579)
...+....++..+.++.+.|+|++.+.+... ..+++..+... .+...+++++||||||||||+|+|+||+|+++.
T Consensus 512 ~~~~~~~~~~~~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~ 591 (650)
T 2xhe_A 512 ASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSS 591 (650)
T ss_dssp --------------------------------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 0000000000011123345789875432211 00011111000 001135678999999999999999999999999
Q ss_pred CCeEEEccCcccChhHHHHHHhccCCCC
Q 008045 544 NREVVLGSSSLDDPPQFITKLKMLTAHE 571 (579)
Q Consensus 544 ~~~i~igsT~i~~~~~fl~~l~~l~~~~ 571 (579)
|++|+||||+|+||++||++|..|+.++
T Consensus 592 ~~~viigsT~Iln~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 592 GYEVYIGAHNIATPAEFVELVSLLDKAD 619 (650)
T ss_dssp SSEEEEEEEEECCHHHHHHHHHTTTC--
T ss_pred CCEEEEeeCCcCCHHHHHHHHHHcCCCc
Confidence 9999999999999999999999998765
No 3
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=3.7e-93 Score=788.36 Aligned_cols=501 Identities=28% Similarity=0.456 Sum_probs=403.8
Q ss_pred CcEEEEecCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCC
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDD 79 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~ 79 (579)
|+|||||+||.+||++|++||+. ..++|++|||+|++.+|+.+++.| + .++.+.|++|.|+++||+|+|+++|||++
T Consensus 75 ~~aIYfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~ 152 (592)
T 3puk_A 75 MKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDV 152 (592)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECC
T ss_pred CcEEEEEeCCHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecC
Confidence 68999999999999999999974 235999999999999999999999 3 57889999999999999999999999999
Q ss_pred cchhhhhcCCCCC-hhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHH-hhh
Q 008045 80 ERALEELFGDEES-SQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMK-YKQ 157 (579)
Q Consensus 80 p~~~~~l~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~-~~~ 157 (579)
|++|..+|.++.+ ..+....++++|++|+++|.++|.+|.|||+|+... -|+++|+.+++.|.+ +..
T Consensus 153 p~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~-----------~a~~lA~~l~~~l~~~~~~ 221 (592)
T 3puk_A 153 PDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLD-----------NASKLAQLVEKKLEDYYKI 221 (592)
T ss_dssp TTHHHHHSCCSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSS-----------HHHHHHHHHHHHHHHSSSS
T ss_pred CchHHHHcCCcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchH-----------HHHHHHHHHHHHHHHHHhc
Confidence 9999999997542 245678999999999999999999999999987421 256788888888877 443
Q ss_pred hcCCCCC-CCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcc
Q 008045 158 TIQNFPM-SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236 (579)
Q Consensus 158 ~~~~~~~-~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~ 236 (579)
..+.++. .++++|||+||++|++|||+||||||||+||+|||++|.|+++.+ | ++|++.|+++|++|.++||+
T Consensus 222 ~~~~~~~~~~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~~---g---~~k~~~L~~~D~~~~~~r~~ 295 (592)
T 3puk_A 222 DEKGLIKGKTQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKTD---G---KEKEAVLEEDDDLWVRVRHR 295 (592)
T ss_dssp CSSCSCCSCCSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCSS---S---SCCEEECSTTSSSTTTTTTS
T ss_pred cCCCcCCCCCCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecCC---C---ceeEEecCCCCHHHHHHhcc
Confidence 2333322 458999999999999999999999999999999999999998741 2 46789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG 316 (579)
Q Consensus 237 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~ 316 (579)
||++|+..|.+++++|+++++. ..+..+++||++||++||+++++++.+++|++|+++|++.+++ +|++++
T Consensus 296 ~f~~v~~~l~~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~ 366 (592)
T 3puk_A 296 HIAVVLEEIPKLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLC 366 (592)
T ss_dssp BHHHHHTTSCSCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 9999999999999999876531 1235688999999999999999999999999999999999987 899999
Q ss_pred HHhHhhhcCCCch--------HHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045 317 QLEQDLVFGDAGF--------KDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 388 (579)
Q Consensus 317 ~~Eq~i~~~~~~~--------~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~ 388 (579)
++||++++|.+.. +.++++|. +..++..|||||+|||++++ +|++++++.++++++|+++ +..++.||+
T Consensus 367 e~EQ~l~~g~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~ 443 (592)
T 3puk_A 367 KTEQDLALGTDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWS 443 (592)
T ss_dssp HHHHHHHSSSCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGG
T ss_pred HHHHHHHhCCCccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHH
Confidence 9999999986421 23344555 56799999999999999997 7999999999999999987 889999999
Q ss_pred HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045 389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468 (579)
Q Consensus 389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~ 468 (579)
.+|+...++. . ..++.++. .+.++.|.+|||+|++++++|++++|+|+++.|||+.+++....+
T Consensus 444 ~lg~~~~~~~-----~--------~~~~~rk~-~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~-- 507 (592)
T 3puk_A 444 HLGVPIVPPS-----Q--------QAKPLRKD-RSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG-- 507 (592)
T ss_dssp GGTCCSSSSB-----S--------SCCCCCCC-CCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC------------
T ss_pred HhCCccccCc-----c--------ccCccccc-CCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC--
Confidence 9998754221 0 11122232 357899999999999999999999999999999999765421100
Q ss_pred CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhCC-CeE
Q 008045 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REV 547 (579)
Q Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~~-~~i 547 (579)
.+..+.|+|+| +.+.+.. ..+++++||||+||+||+|+|++|++++..+ ++|
T Consensus 508 -----------~~~~s~r~~~w-~~~~~~~---------------~~~~~riiVFivGGvTysE~r~~~els~~~~~~~v 560 (592)
T 3puk_A 508 -----------SGAVSARQKPR-TNYLELD---------------RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEV 560 (592)
T ss_dssp ---------------------C-CCCCCCC---------------CSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEE
T ss_pred -----------Ccccccccccc-ccCcccc---------------ccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceE
Confidence 00113345789 4333111 1357899999999999999999999999875 899
Q ss_pred EEccCcccChhHHHHHHhccCCC--CCCcc
Q 008045 548 VLGSSSLDDPPQFITKLKMLTAH--ELSLD 575 (579)
Q Consensus 548 ~igsT~i~~~~~fl~~l~~l~~~--~~~~~ 575 (579)
+||||+|+||++||++|+.|+.+ .|+|.
T Consensus 561 ilG~T~i~np~~fl~~l~~l~~~~~~~~~~ 590 (592)
T 3puk_A 561 IIGSTHILTPRKLLDDIKMLNKSKDKVSFK 590 (592)
T ss_dssp EEEESSEECHHHHHHHHSSTTSCCC-----
T ss_pred EEeeCCcCCHHHHHHHHHHhCCcccccCCC
Confidence 99999999999999999999854 44443
No 4
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.2e-91 Score=782.25 Aligned_cols=509 Identities=28% Similarity=0.488 Sum_probs=405.6
Q ss_pred CcEEEEecCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCC
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDD 79 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~ 79 (579)
++|||||+||.+||++|++||+. ..|+|++|||+|++.+|+.+++.+|+. ++.+.|++|.|+++||+|+|+|+|||++
T Consensus 68 ~~aIy~v~Pt~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~ 146 (591)
T 1epu_A 68 LEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDS 146 (591)
T ss_dssp EEEEEEECCCHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCC
T ss_pred CCeEEEecCCHHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCC
Confidence 57999999999999999999975 248999999999999999999999975 5788888999999999999999999999
Q ss_pred cchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhc
Q 008045 80 ERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTI 159 (579)
Q Consensus 80 p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~ 159 (579)
|++|..+|.+.. ..+....++++|++|+++|.++|.+|.|||+|+. ..|+++|+.+++.|.++..+.
T Consensus 147 ~~~~~~~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~a~~lA~~l~~~l~~~~~~~ 213 (591)
T 1epu_A 147 PDTFQVYYNPSR-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADD 213 (591)
T ss_dssp THHHHHHHCGGG-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHhcCCcc-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCC------------cHHHHHHHHHHHHHHHHHhcC
Confidence 999999998631 1223788999999999999999999999998873 257889999998888876655
Q ss_pred CCCCC---CCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcc
Q 008045 160 QNFPM---SETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236 (579)
Q Consensus 160 ~~~~~---~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~ 236 (579)
+.|+. .++++|||+||++|++|||+||||||||+||+|||++|.|+++.+. ++..+++++.|+++|+||.++||+
T Consensus 214 ~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~ 291 (591)
T 1epu_A 214 PTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNTG--GNEVPEKEVLLDEKDDLWVEMRHQ 291 (591)
T ss_dssp TTTTCHHHHTSCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTS
T ss_pred CCCCCCCCCCCceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEecC--CCCccceEEeCCCCChHHHHHhcc
Confidence 55532 3478999999999999999999999999999999999999997531 223456789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG 316 (579)
Q Consensus 237 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~ 316 (579)
||++|+..|.+++++|+++++..+ .++..+++||++||++||+++++++.+++|++||++|++.+++ +|++++
T Consensus 292 ~f~~v~~~l~~~~~~~~~~~~~~~------~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~ 364 (591)
T 1epu_A 292 HIAVVSQNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLC 364 (591)
T ss_dssp BHHHHHHHHHHHHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccc------cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999998754211 0134678899999999999999999999999999999999999 999999
Q ss_pred HHhHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045 317 QLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 388 (579)
Q Consensus 317 ~~Eq~i~~~~~~--------~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~ 388 (579)
++||++++|.+. .+.++++|. +...+..|||||+|||++++ +|++++++.++++.+|++++++.++.+|+
T Consensus 365 ~~EQ~l~~g~d~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~ 442 (591)
T 1epu_A 365 KVEQDLAMGTDADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQ 442 (591)
T ss_dssp HHHHHHHHSBCTTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGG
T ss_pred HHHHHHhcCCCccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999998742 125677776 46789999999999999998 68999999999999999989999999999
Q ss_pred HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045 389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468 (579)
Q Consensus 389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~ 468 (579)
++|+...+...+...|...+ .+. ++. .+.+.+|+||||+|+++++||.+++++++++.||+++++.....
T Consensus 443 ~~g~~~~~~~~~~~~~~~~~--~~~----~~~-~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~--- 512 (591)
T 1epu_A 443 NLGVPIIQDGGRRKIPQPYH--THN----RKE-RQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPS--- 512 (591)
T ss_dssp GGTCCCBSCTTSCCCCCTTS--GGG----SCC-CCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------
T ss_pred HcCCccccCCcccccccccc--ccc----ccc-CCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccc---
Confidence 99987654321111121100 000 111 35678899999999999999999999999999999975432100
Q ss_pred CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHh--hCCCe
Q 008045 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTA--KLNRE 546 (579)
Q Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~--~~~~~ 546 (579)
.+ ..++.+++.|++.+.+.. ...++++|||||||+||+|+|+||+|++ ..|++
T Consensus 513 -------~~---~~~s~~~~~~~~~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~ 567 (591)
T 1epu_A 513 -------CQ---QPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWE 567 (591)
T ss_dssp ----------------------------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCE
T ss_pred -------cC---CccccccCcccCCCCccc---------------cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCe
Confidence 00 112234468876443211 1235679999999999999999999998 56899
Q ss_pred EEEccCcccChhHHHHHHhccCC
Q 008045 547 VVLGSSSLDDPPQFITKLKMLTA 569 (579)
Q Consensus 547 i~igsT~i~~~~~fl~~l~~l~~ 569 (579)
|+||||+|+||++||++|..|+.
T Consensus 568 viigsT~i~n~~~fl~~l~~l~~ 590 (591)
T 1epu_A 568 VILGSTHILTPEGLLRDLRKISN 590 (591)
T ss_dssp EEEEESSBCCHHHHHHHHHTTSC
T ss_pred EEEecCCcCCHHHHHHHHHHhcC
Confidence 99999999999999999999875
No 5
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=4.5e-91 Score=779.36 Aligned_cols=506 Identities=28% Similarity=0.528 Sum_probs=408.7
Q ss_pred CcEEEEecCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeecCCCceEeCC
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDD 79 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsL~~ 79 (579)
|+|||||+||.+||++|++||++ ..++|++|||||++.+|+.+++.||+ .+..+.|++|.|+++||+|+|+|+|||++
T Consensus 83 ~~aIyfv~Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~ 161 (606)
T 3c98_A 83 LEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDS 161 (606)
T ss_dssp SCEEEEECCCHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCC
T ss_pred CCEEEEEcCCHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecC
Confidence 68999999999999999999974 23589999999999999999999996 55688999999999999999999999999
Q ss_pred cchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhc
Q 008045 80 ERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTI 159 (579)
Q Consensus 80 p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~~~ 159 (579)
|++|..+|.++. ..+....++++|++|+++|.++|.+|.|||+|+. ..|+.+|+.+++.++.+.+++
T Consensus 162 ~~~~~~l~~~~~-~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~ 228 (606)
T 3c98_A 162 ADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADD 228 (606)
T ss_dssp TTHHHHHHCGGG-TTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHhcCCcc-cccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcC
Confidence 999999998543 2223678999999999999999999999998874 246678889999888887665
Q ss_pred CCC---CCCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCCCCcceeEecCCCchHHHHhhcc
Q 008045 160 QNF---PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 236 (579)
Q Consensus 160 ~~~---~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~ 236 (579)
+.+ +..++++|||+||++|++|||+||||||||+||+|||++|.|+++.+.. +..+.+++.++++|+||.++||+
T Consensus 229 ~~~~~~~~~~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~--~~~~~k~~~l~~~D~~~~~~r~~ 306 (606)
T 3c98_A 229 PTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHK 306 (606)
T ss_dssp TTTTCSTTTTSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESS--SSEEEEEEECSTTCHHHHHHTTS
T ss_pred CcccCCCCCCCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCCC--CCccceEeecCCCchhHHHHhcc
Confidence 544 2345789999999999999999999999999999999999999986422 23446789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 008045 237 HIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELG 316 (579)
Q Consensus 237 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~ 316 (579)
||++|+..|.+++++|+++++. ..++..+++||++||++||+++++++.+++|++|+++|++.++ ++|++++
T Consensus 307 ~f~~v~~~l~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~ 378 (606)
T 3c98_A 307 HIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLC 378 (606)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999876531 1223557889999999999999999999999999999999995 6899999
Q ss_pred HHhHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCCHHHHHHHHHHH
Q 008045 317 QLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMR 388 (579)
Q Consensus 317 ~~Eq~i~~~~~~--------~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~l~q~~g~~~~~~~~l~~L~ 388 (579)
++||++++|.+. .+.++++|. +..++..|||||+|||++++ +|++++++.++++..|++.++..++.+|+
T Consensus 379 e~EQ~l~~~~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~ 456 (606)
T 3c98_A 379 RVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMA 456 (606)
T ss_dssp HHHHHHHHSBCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGG
T ss_pred HHHHHHHhCCCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999988542 246777777 57899999999999999998 69999999999999999999999999999
Q ss_pred HhcccccccCccCCCCccchhhhhhcccccccCCCCCcccccccchHHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCC
Q 008045 389 LLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTT 468 (579)
Q Consensus 389 ~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~ 468 (579)
.+|+...+... ... ......+. .+.+.+|+||||+|++++++|.+++++|++..||++..+.....+
T Consensus 457 ~lg~~~~~~~~----~~~------~~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~-- 523 (606)
T 3c98_A 457 HLGVPIVTDST----LRR------RSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS-- 523 (606)
T ss_dssp GGTCCCBCCCT----TTC------CCCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------
T ss_pred HhCCccccccc----ccc------ccchhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc--
Confidence 99987653211 100 01111111 356788999999999999999999999999999999754322110
Q ss_pred CCCCCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhC-CCeE
Q 008045 469 PSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREV 547 (579)
Q Consensus 469 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~-~~~i 547 (579)
.+..+.+.+.|.+.+.++. ..+++++|||||||+||+|+|+||+|+++. +++|
T Consensus 524 -----------~~~~~~~~~~~~~~~~~~~---------------~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~v 577 (606)
T 3c98_A 524 -----------TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEV 577 (606)
T ss_dssp ----------------------------------------------CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEE
T ss_pred -----------ccccccccCCccccCCCCC---------------CCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEE
Confidence 1112223467766443221 135678999999999999999999998865 4799
Q ss_pred EEccCcccChhHHHHHHhccCCCC
Q 008045 548 VLGSSSLDDPPQFITKLKMLTAHE 571 (579)
Q Consensus 548 ~igsT~i~~~~~fl~~l~~l~~~~ 571 (579)
+||||+|+||++||++|++|++.+
T Consensus 578 iiGsT~Iln~~~fl~~L~~L~k~~ 601 (606)
T 3c98_A 578 LIGSTHILTPQKLLDTLKKLNKTD 601 (606)
T ss_dssp EEEESSEECHHHHHHHHTTTTSCC
T ss_pred EEEeCCeeCHHHHHHHHHHhCCCc
Confidence 999999999999999999998754
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=2e-81 Score=706.56 Aligned_cols=508 Identities=19% Similarity=0.302 Sum_probs=373.6
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHhC---CCcccccceeEEEecceeecCCCceEe
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAVDSQGFVT 77 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~~---~~~~~~i~~i~e~~~dfipld~~lfsL 77 (579)
++|||||+||.+||++|++||+. |+|++|||+|++.+|+.+++++|+. .++.+.|++|.|+++||+|+|+|+|+|
T Consensus 101 ~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple~dlfsL 178 (671)
T 1mqs_A 101 VPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSL 178 (671)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTTEEEC
T ss_pred ceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeeccCCEEEe
Confidence 57999999999999999999975 8999999999999999999999973 678899999999999999999999999
Q ss_pred CCcchhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHcCCCcEEEEccCCccchhhhhcccchhHHHHHHHHHHHHHHhhh
Q 008045 78 DDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ 157 (579)
Q Consensus 78 ~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~ 157 (579)
++|++|..+|.+..++......++++|++|+++|.++|.+|.|||..+. .|+++|+.+...+..+..
T Consensus 179 ~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~~l~~~~~ 245 (671)
T 1mqs_A 179 EISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGTKLRDFVI 245 (671)
T ss_dssp CCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHHHHHHHHh
Confidence 9999999999977655556689999999999999999999999985442 244555555555544322
Q ss_pred hc--CCC------CCCCCeeEEEecCCCCcccchhhhhhhhHHhhhhccccCCeEEEeecCCCCC-------CCcceeEe
Q 008045 158 TI--QNF------PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDG-------PPEKKEVL 222 (579)
Q Consensus 158 ~~--~~~------~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~-------~~~~k~~~ 222 (579)
.. ..| +...+++|||+||++|++|||+||||||||+||+|||++|.|+++.+...++ ..++|++.
T Consensus 246 ~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~ 325 (671)
T 1mqs_A 246 NTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYD 325 (671)
T ss_dssp TTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEEC
T ss_pred hccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEe
Confidence 11 123 1235789999999999999999999999999999999999999976322110 13458899
Q ss_pred cCCCchHHHHhhcchHHHHHHHHHHHHHHHHHhhhHhhhhc--CCC------CCCCCCHHHHHHHHHHchhhHHHHHHHH
Q 008045 223 LEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQN--GSR------DGSNLSTRDLQKLVQALPQYSEQIDKLS 294 (579)
Q Consensus 223 l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~v~~lp~~~~~~~~l~ 294 (579)
|+++|+||.++||+||++|+..|.+++++|+++++ ++++ +.. +....++++|++||++||+|++++++++
T Consensus 326 L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~ 403 (671)
T 1mqs_A 326 IEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAA--EITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTID 403 (671)
T ss_dssp CCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHH--HHHHHC--------------------CCCCSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--HHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999998764 3332 100 1224678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhhcCCCchHHHHHHhhhcCCCChhhHHHHHHHHHHhCCC-CCCchHH---HHH
Q 008045 295 LHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPE-KFEGEKG---LNL 370 (579)
Q Consensus 295 ~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~e~i~~~~~~~~~dklRLl~L~~l~~~~-g~~~~~~---~~l 370 (579)
+|++||++|++.+++++|++++++||+++ +....++++++|.+....+..|||||+|||++++ + |++++++ ++.
T Consensus 404 ~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~-~~g~~~~~~~~l~~~ 481 (671)
T 1mqs_A 404 THMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTS-TTGLPKDFVQNVENY 481 (671)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHC-SSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 99999999999999999999999999997 4334457888887422359999999999999998 5 8988774 556
Q ss_pred HHHcCCCHHHHHHHHHHHHhcccc---c-ccC----c-c---CCC-CccchhhhhhcccccccCCCCCcccccc-----c
Q 008045 371 MKLAKLTADDMTAVNNMRLLGGAL---E-SKK----S-T---IGA-FSLKFDIHKKKRAARKDRSGGEETWQLS-----R 432 (579)
Q Consensus 371 ~q~~g~~~~~~~~l~~L~~lg~~~---~-~~~----~-~---~~~-~~~~f~~~k~~~~~~~~~~~~~~~y~~s-----~ 432 (579)
++.+|++...+..+.++..++... . .+. + . .+. |+..+. +-....+.... .......+ .
T Consensus 482 l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~--~~~~~~v~n~~P~~ 558 (671)
T 1mqs_A 482 FKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIY-GLTEGKLQGGV--GSLISGIKKLLPEK 558 (671)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------C-HHHHHTTTSSC--SSSHHHHHHTCCCC
T ss_pred HHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHH-HHHHHHhccch--hhHHHhHHhhCCCc
Confidence 678999755566665555443211 0 000 0 0 011 221110 00001110000 00011122 3
Q ss_pred chHHHHHHHHHHhcC-----C--CCCCCCCCccCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCCCCcccc
Q 008045 433 FYPMIEELVEKLGKN-----E--LSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSV 505 (579)
Q Consensus 433 y~P~i~~lve~~~~~-----~--l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~ 505 (579)
+.|.+.++++.+.++ + ++.++||+++ |.....+ ++...
T Consensus 559 ~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~-p~~~~~~-------------~~~~~--------------------- 603 (671)
T 1mqs_A 559 KTIPITNVVDAIMDPLNSSQKNLETTDSYLYID-PKITRGS-------------HTRKP--------------------- 603 (671)
T ss_dssp CCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEEC-TTSSSCS-------------SSCCC---------------------
T ss_pred ccchHHHHHHHHHhccccccccCCCccCceeeC-CCCcCCC-------------CCCCc---------------------
Confidence 556789999999998 3 5667899986 3211000 00000
Q ss_pred ccccccccccCCceEEEEEEcCCCHHHHHHHHHHHhhC---CCeEEEccCcccChhHHHHHHhccCCCCC
Q 008045 506 LKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL---NREVVLGSSSLDDPPQFITKLKMLTAHEL 572 (579)
Q Consensus 506 ~~~~~~~~~~~~~~iiVfviGGvTy~Ei~~l~~l~~~~---~~~i~igsT~i~~~~~fl~~l~~l~~~~~ 572 (579)
...+.+++|||||||+||+|+++||+|+++. |++|+||||+|+||++||++|..|++...
T Consensus 604 -------~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~~ 666 (671)
T 1mqs_A 604 -------KRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNS 666 (671)
T ss_dssp -------CCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHTT
T ss_pred -------ccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCcccc
Confidence 0124689999999999999999999999883 79999999999999999999999986653
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.31 E-value=9e-13 Score=119.63 Aligned_cols=64 Identities=27% Similarity=0.520 Sum_probs=57.8
Q ss_pred CcEEEEecCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHHHHHHHHh---CCCcccccceeEEEecc
Q 008045 1 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 66 (579)
Q Consensus 1 ~~aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~l~Ft~~~~~~~le~la~---~~~~~~~i~~i~e~~~d 66 (579)
|+|||||+||.+||++|++||++ |+|++|||||++.+|+.++++||+ +.+..+.|++|.|+++|
T Consensus 93 ~~aIYfv~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 93 VPAVYFVMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp SCCEEEECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred CCEEEEecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 68999999999999999999975 899999999999999999999997 35678888888888765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.43 E-value=53 Score=21.33 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHchhhHHHHHHHHHHHHHHHHH
Q 008045 271 LSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKI 303 (579)
Q Consensus 271 ~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i 303 (579)
.++.++++++..|.+-....+++.-|+..+.+-
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfakae 35 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKAE 35 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 478899999998888888888888888776543
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=24.14 E-value=50 Score=31.01 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHH
Q 008045 519 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQF 560 (579)
Q Consensus 519 ~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~f 560 (579)
.+.|.|.||++-.-+..+.+ .|.+++|.++.|+..++.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGAd~~V~GsaIf~~~d~ 210 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISAS----HGANIIVAGTSIFNAEDP 210 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHH----HTCCEEEESHHHHTCSSH
T ss_pred CCeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCH
Confidence 56789999999876665544 489999999999975433
No 10
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=23.33 E-value=66 Score=29.53 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=36.4
Q ss_pred eEEEEEEcCC-CHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 008045 519 RIFVFIVGGT-TRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 567 (579)
Q Consensus 519 ~iiVfviGGv-Ty~Ei~~l~~l~~~~~~~i~igsT~i~~~~~fl~~l~~l 567 (579)
.+-|+..||+ |...+..+.. .|.+.++.++.++.|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~----~Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMD----LGVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHH----TTCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHH----cCCCEEEEChHHcCcHHHHHHHHHH
Confidence 4678999999 8888877765 3788888889999998888887643
No 11
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=21.15 E-value=37 Score=31.65 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=27.9
Q ss_pred eEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHH
Q 008045 519 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQF 560 (579)
Q Consensus 519 ~iiVfviGGvTy~Ei~~l~~l~~~~~~~i~igsT~i~~~~~f 560 (579)
.+-|++.||++-.-+..+.. .|.++++.++.|+..++.
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~----aGaD~vvvGsai~~~~d~ 210 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAAS----AGANCIVAGSSIFGAAEP 210 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHH----HTCCEEEESHHHHTSSCH
T ss_pred CCCEEEECCcCHHHHHHHHH----cCCCEEEECHHHHCCCCH
Confidence 44689999999865544433 289999999999976443
Done!