BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008047
         (579 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 405

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 322 LAIQPGAHAGNFPVSMEPCMARSASVHGCTETLNPPSLPPQDEKINGLKDAATDVSRTIS 381
           L + PG H G F +  E    +   V+G   T   PSL  +   +   K A  D+ R I+
Sbjct: 243 LDLAPGGHLGRFVIWTESAFKKLEEVYG---TFEAPSLKKKGFILPRPKMANADLGRIIN 299

Query: 382 RRDMATQMSP 391
             ++ + + P
Sbjct: 300 SDEVQSVVKP 309


>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
          Length = 854

 Score = 29.3 bits (64), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 17/121 (14%)

Query: 448 RTSGKSSEIVDDWRKKAADAQTSA---WDITESTKTISKIKREELRIT----AWENLQKA 500
           R   K+ +++D+   +   A  SA    D  E  K   +I+RE L+      + E L+  
Sbjct: 376 RLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAI 435

Query: 501 KAEAA-----IRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTS 555
           +AE A     I KL  + E+ R     +I+ KLR AQ R  E+R  +  A + + + R +
Sbjct: 436 EAEIAKLTEEIAKLRAEWERER-----EILRKLREAQHRLDEVRREIELAERQYDLNRAA 490

Query: 556 H 556
            
Sbjct: 491 E 491


>pdb|1ZVO|C Chain C, Semi-Extended Solution Structure Of Human Myeloma
           Immunoglobulin D Determined By Constrained X-Ray
           Scattering
 pdb|1ZVO|D Chain D, Semi-Extended Solution Structure Of Human Myeloma
           Immunoglobulin D Determined By Constrained X-Ray
           Scattering
          Length = 512

 Score = 28.9 bits (63), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 351 TETLNPPSLPPQDEKINGLKDAATDVSRTISRRDMATQMSPESGSY-------SSPKRML 403
           T TLN PSLPPQ  ++  L++ A      +S   +A+   PE+ S+        SP  +L
Sbjct: 377 TCTLNHPSLPPQ--RLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNIL 434

Query: 404 L 404
           L
Sbjct: 435 L 435


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.124    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,085,843
Number of Sequences: 62578
Number of extensions: 488019
Number of successful extensions: 1048
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 10
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)