BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008047
(579 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
GN=At3g61260 PE=1 SV=1
Length = 212
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 471 AWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRS 530
AW+ +E +K +K +++ + AWEN +KA EA ++K+E +LEK+++ +++ NK+ +
Sbjct: 109 AWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAA 168
Query: 531 AQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQM-GSLSGCF 574
K A+E R +++ A + V + A +R T + + GCF
Sbjct: 169 IHKEAEE-RRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212
>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
Length = 198
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 471 AWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRS 530
AW+ +E +K +K +++ I AWEN +KA EA ++K+E +LEK+++ +K+ NK+
Sbjct: 95 AWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIAL 154
Query: 531 AQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRT 564
K A+E R +++ A + + + A +R T
Sbjct: 155 LHKEAEEKR-AMIEAKRGEDLLKAEELAAKYRAT 187
>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
Length = 190
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 456 IVDDWRKKAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEK 515
I+ D K+ + AW+ +E +K ++ +++ + AWEN +KA EA +RK+E KLEK
Sbjct: 72 ILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEK 131
Query: 516 RRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQM-GSLSGCF 574
+++ +K+ NK+ + K A+E R ++V A + ++ + +R T + + GCF
Sbjct: 132 KKAQYGEKMKNKVAAIHKLAEEKR-AMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190
>sp|Q09G60|ATPF_PLAOC ATP synthase subunit b, chloroplastic OS=Platanus occidentalis
GN=atpF PE=3 SV=1
Length = 184
Score = 34.7 bits (78), Expect = 1.9, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 479 KTISKIKR-EELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKI----MNKLRSAQK 533
+ +S I+ EELR A E L+KA+A +RK+EM+ ++ R + +I +N + S K
Sbjct: 59 RILSTIRNSEELRGGAIEQLEKARAR--LRKVEMEADEFRVNGYSEIEREKLNLINSTYK 116
Query: 534 ---RAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQMGSLSGCF 574
R + ++ + Q + + + R +G+L+ C
Sbjct: 117 NLERLENYKNETIQFEQQRAINQVRQRVFQQALQRALGTLNSCL 160
>sp|P11823|SHUT_ADE40 Shutoff protein OS=Human adenovirus F serotype 40 GN=L4 PE=2 SV=2
Length = 770
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 116 AQKEDSVATAEDDNRTLDSARNS--FSQSLKECQERRLRAEALSRRRPASLDLNNATFIS 173
A E + EDD AR S ++LKEC + L E LSR A+L
Sbjct: 55 ALSEPNYLGGEDDVLLKHIARQSTIVREALKECTQTPLTVEELSRAYEANL--------F 106
Query: 174 SPRLGAMKK---SSNLSRKTGTFPSPGTPNYRNASVGMHKGWSSERVPLQTTGNRRQVGA 230
SPR+ K+ + + + +P P A H + ++R+PL NR + G
Sbjct: 107 SPRVPPKKQPNGTCETNPRLNFYPVFAVP---EALATYHIFFKNQRIPLSCRANRTR-GD 162
Query: 231 ALLPFNNGRTLP 242
LL G +P
Sbjct: 163 GLLHLKAGAHIP 174
>sp|A6MM22|ATPF_BUXMI ATP synthase subunit b, chloroplastic OS=Buxus microphylla GN=atpF
PE=3 SV=1
Length = 184
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 479 KTISKIKR-EELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKI----MNKLRSAQK 533
+ +S I+ EELR+ A E L+KA+A +RK+EM+ ++ R + +I +N + S K
Sbjct: 59 RILSTIRNSEELRVGAIEQLEKARAR--LRKVEMEADEFRVNGYSEIEREKLNLINSTYK 116
Query: 534 ---RAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQMGSLSGCF 574
R + ++ + Q + + + +G+L+ C
Sbjct: 117 NLERLENYKNETIHFEQQRAINQVRQRVFQQALQGALGTLNSCL 160
>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=drs1 PE=3 SV=1
Length = 821
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 456 IVDDWRKKAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAE 503
+ D W KKAAD + ++ E KT ++ + E+++T ENL K +AE
Sbjct: 684 VADQWAKKAADLEEEINEVLEEEKTEKQLAQAEMQVTKGENLIKHEAE 731
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.124 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,217,918
Number of Sequences: 539616
Number of extensions: 8204160
Number of successful extensions: 23332
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 23146
Number of HSP's gapped (non-prelim): 375
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)