Query 008047
Match_columns 579
No_of_seqs 149 out of 230
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 18:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03763 Remorin_C: Remorin, C 100.0 1.8E-34 4E-39 256.5 13.0 108 462-570 2-109 (111)
2 PF03763 Remorin_C: Remorin, C 96.6 0.023 5.1E-07 51.6 10.8 79 485-564 3-81 (111)
3 PRK09174 F0F1 ATP synthase sub 85.8 13 0.00028 37.1 12.0 37 501-537 102-138 (204)
4 PRK13454 F0F1 ATP synthase sub 78.6 18 0.00038 35.2 9.7 31 513-543 114-144 (181)
5 PF14738 PaaSYMP: Solute carri 75.6 82 0.0018 30.6 13.4 96 459-555 48-145 (154)
6 PRK06569 F0F1 ATP synthase sub 70.7 82 0.0018 30.7 11.9 60 483-543 42-101 (155)
7 PRK13455 F0F1 ATP synthase sub 68.4 45 0.00097 32.1 9.7 31 513-543 110-140 (184)
8 KOG1103 Predicted coiled-coil 67.8 29 0.00064 38.2 9.1 59 480-538 140-211 (561)
9 PRK14475 F0F1 ATP synthase sub 66.8 52 0.0011 31.3 9.7 17 526-542 106-122 (167)
10 PRK00247 putative inner membra 66.2 49 0.0011 36.9 10.6 6 510-515 342-347 (429)
11 cd03404 Band_7_HflK Band_7_Hfl 65.2 39 0.00084 33.8 8.9 32 529-561 208-239 (266)
12 PTZ00121 MAEBL; Provisional 64.7 52 0.0011 42.0 11.2 7 439-445 1263-1269(2084)
13 PRK13455 F0F1 ATP synthase sub 63.1 1.5E+02 0.0032 28.6 12.5 37 501-537 76-112 (184)
14 PF10376 Mei5: Double-strand r 62.8 46 0.001 33.9 8.9 56 487-543 129-184 (221)
15 PRK13460 F0F1 ATP synthase sub 60.7 1.6E+02 0.0035 28.2 12.5 34 510-543 96-129 (173)
16 CHL00019 atpF ATP synthase CF0 60.6 1.7E+02 0.0036 28.4 12.0 16 528-543 122-137 (184)
17 KOG4661 Hsp27-ERE-TATA-binding 59.7 23 0.0005 41.1 6.7 67 475-541 624-703 (940)
18 PRK06231 F0F1 ATP synthase sub 59.4 1.9E+02 0.0042 28.8 12.5 7 413-419 31-37 (205)
19 PRK13428 F0F1 ATP synthase sub 59.3 1.2E+02 0.0026 33.7 12.0 16 528-543 99-114 (445)
20 PF10211 Ax_dynein_light: Axon 59.0 1.4E+02 0.0029 29.6 11.2 77 480-558 96-179 (189)
21 TIGR01069 mutS2 MutS2 family p 58.5 1E+02 0.0022 36.5 12.0 17 473-489 509-525 (771)
22 PRK06231 F0F1 ATP synthase sub 58.4 82 0.0018 31.4 9.7 13 530-542 148-160 (205)
23 PRK00409 recombination and DNA 58.4 94 0.002 36.9 11.7 11 135-145 145-155 (782)
24 PF09755 DUF2046: Uncharacteri 58.0 1.5E+02 0.0032 32.1 12.0 75 463-538 80-154 (310)
25 KOG0163 Myosin class VI heavy 58.0 1E+02 0.0022 37.4 11.5 27 511-537 949-975 (1259)
26 PF10186 Atg14: UV radiation r 57.5 1.9E+02 0.004 28.8 12.1 7 511-517 98-104 (302)
27 PRK13460 F0F1 ATP synthase sub 57.5 96 0.0021 29.7 9.7 33 505-537 69-101 (173)
28 PTZ00121 MAEBL; Provisional 57.3 87 0.0019 40.2 11.2 34 522-555 1318-1351(2084)
29 KOG3540 Beta amyloid precursor 57.0 69 0.0015 36.7 9.7 120 439-564 242-388 (615)
30 TIGR03319 YmdA_YtgF conserved 56.9 1.5E+02 0.0033 33.5 12.6 9 488-496 75-83 (514)
31 PRK13453 F0F1 ATP synthase sub 56.9 1.9E+02 0.0041 27.8 12.5 30 514-543 102-131 (173)
32 PRK07353 F0F1 ATP synthase sub 56.1 1.6E+02 0.0035 26.8 10.5 30 514-543 89-118 (140)
33 TIGR03319 YmdA_YtgF conserved 55.4 2.2E+02 0.0047 32.4 13.4 7 508-514 80-86 (514)
34 PF04012 PspA_IM30: PspA/IM30 54.7 2.2E+02 0.0047 27.9 12.5 85 475-560 51-153 (221)
35 PRK10698 phage shock protein P 54.0 2.1E+02 0.0045 29.0 11.8 23 475-497 52-74 (222)
36 COG0711 AtpF F0F1-type ATP syn 53.6 1.2E+02 0.0026 29.0 9.6 39 502-540 56-94 (161)
37 KOG2412 Nuclear-export-signal 52.7 75 0.0016 36.7 9.2 50 495-544 219-269 (591)
38 PRK00409 recombination and DNA 52.6 1.6E+02 0.0035 35.0 12.3 14 521-534 572-585 (782)
39 KOG2129 Uncharacterized conser 52.1 53 0.0011 37.0 7.8 73 462-535 102-174 (552)
40 KOG1962 B-cell receptor-associ 52.1 73 0.0016 32.8 8.3 40 498-538 152-191 (216)
41 PRK13454 F0F1 ATP synthase sub 51.9 2.4E+02 0.0051 27.5 12.1 37 502-538 81-117 (181)
42 KOG0577 Serine/threonine prote 51.6 69 0.0015 38.0 8.8 81 469-551 815-900 (948)
43 PRK14475 F0F1 ATP synthase sub 51.5 2.2E+02 0.0048 27.1 12.5 21 511-531 113-133 (167)
44 PRK14474 F0F1 ATP synthase sub 50.1 1.6E+02 0.0035 30.2 10.5 25 506-530 77-101 (250)
45 PRK08476 F0F1 ATP synthase sub 50.1 2.2E+02 0.0048 26.6 12.1 10 528-537 94-103 (141)
46 TIGR01144 ATP_synt_b ATP synth 49.9 1.7E+02 0.0036 26.9 9.7 28 516-543 81-108 (147)
47 TIGR00570 cdk7 CDK-activating 49.5 1.6E+02 0.0035 31.7 10.7 25 463-487 116-140 (309)
48 COG5269 ZUO1 Ribosome-associat 49.2 91 0.002 33.7 8.7 60 479-538 233-292 (379)
49 KOG4552 Vitamin-D-receptor int 48.4 96 0.0021 32.3 8.4 59 498-557 68-137 (272)
50 PRK08476 F0F1 ATP synthase sub 47.9 2.4E+02 0.0052 26.4 12.4 34 506-539 61-94 (141)
51 COG2433 Uncharacterized conser 46.8 2.1E+02 0.0044 33.8 11.5 66 477-543 424-498 (652)
52 PF05103 DivIVA: DivIVA protei 46.3 12 0.00025 33.4 1.5 42 501-543 43-84 (131)
53 PF11559 ADIP: Afadin- and alp 45.7 53 0.0011 30.5 5.8 31 488-518 117-147 (151)
54 KOG0163 Myosin class VI heavy 45.5 2E+02 0.0043 35.1 11.3 11 370-380 658-668 (1259)
55 PRK01194 V-type ATP synthase s 45.5 3.1E+02 0.0066 26.9 11.4 20 506-525 33-52 (185)
56 PRK06568 F0F1 ATP synthase sub 44.6 1.8E+02 0.0038 28.3 9.2 17 510-526 80-96 (154)
57 PRK09174 F0F1 ATP synthase sub 44.2 3.5E+02 0.0075 27.2 12.4 42 511-553 134-175 (204)
58 PRK12705 hypothetical protein; 43.6 2.8E+02 0.006 31.8 11.9 10 466-475 52-61 (508)
59 cd07663 BAR_SNX5 The Bin/Amphi 43.6 1.7E+02 0.0036 30.1 9.3 37 462-500 122-161 (218)
60 TIGR01069 mutS2 MutS2 family p 42.3 2.8E+02 0.006 33.1 12.1 36 502-537 548-583 (771)
61 PRK10930 FtsH protease regulat 42.0 1.4E+02 0.0031 33.1 9.2 47 513-560 261-307 (419)
62 cd07630 BAR_SNX_like The Bin/A 42.0 3.3E+02 0.0072 27.2 11.0 21 523-543 154-175 (198)
63 KOG4326 Mitochondrial F1F0-ATP 41.0 92 0.002 27.5 6.0 26 481-506 31-56 (81)
64 PTZ00491 major vault protein; 40.8 1.9E+02 0.0042 35.1 10.5 48 464-511 703-750 (850)
65 KOG2072 Translation initiation 40.7 3.1E+02 0.0068 33.6 12.0 22 192-213 284-313 (988)
66 COG3064 TolA Membrane protein 40.6 4.1E+02 0.0089 29.4 12.0 39 466-504 151-189 (387)
67 PRK14471 F0F1 ATP synthase sub 40.4 3.2E+02 0.007 25.7 11.8 24 520-543 98-121 (164)
68 PF09731 Mitofilin: Mitochondr 40.0 4.3E+02 0.0094 29.7 12.7 24 506-529 309-332 (582)
69 KOG3654 Uncharacterized CH dom 39.8 65 0.0014 37.1 6.3 40 494-544 397-438 (708)
70 KOG4848 Extracellular matrix-a 39.8 2.4E+02 0.0053 29.1 9.6 39 472-510 132-170 (225)
71 PRK13428 F0F1 ATP synthase sub 39.1 5.9E+02 0.013 28.4 13.8 25 510-534 103-127 (445)
72 PF11875 DUF3395: Domain of un 38.6 1E+02 0.0022 29.5 6.6 40 510-550 8-47 (151)
73 KOG0996 Structural maintenance 37.7 2.8E+02 0.0062 35.0 11.4 66 505-574 557-622 (1293)
74 PRK11637 AmiB activator; Provi 37.5 4.6E+02 0.01 28.5 12.1 38 500-538 71-108 (428)
75 PF15392 Joubert: Joubert synd 37.3 1.2E+02 0.0027 32.9 7.5 68 483-553 51-128 (329)
76 PF05529 Bap31: B-cell recepto 36.7 2.5E+02 0.0055 27.1 9.1 68 475-543 118-185 (192)
77 TIGR02977 phageshock_pspA phag 36.1 4.5E+02 0.0098 26.2 12.8 65 476-541 53-135 (219)
78 TIGR03321 alt_F1F0_F0_B altern 35.6 4.9E+02 0.011 26.4 12.5 20 511-530 108-127 (246)
79 PF06034 DUF919: Nucleopolyhed 34.7 78 0.0017 26.9 4.5 41 487-527 20-61 (62)
80 PF05010 TACC: Transforming ac 34.1 5.2E+02 0.011 26.3 11.3 60 478-537 93-161 (207)
81 PF09731 Mitofilin: Mitochondr 33.7 7.4E+02 0.016 27.9 13.7 24 509-532 331-354 (582)
82 PHA02562 46 endonuclease subun 33.6 5.3E+02 0.012 28.4 12.0 8 571-578 285-292 (562)
83 PF05957 DUF883: Bacterial pro 33.1 3.2E+02 0.007 23.6 8.8 35 503-537 4-38 (94)
84 KOG2264 Exostosin EXT1L [Signa 32.6 3.5E+02 0.0076 32.1 10.5 71 483-554 79-149 (907)
85 PF12128 DUF3584: Protein of u 32.5 4.5E+02 0.0097 32.8 12.2 40 476-515 657-696 (1201)
86 KOG4715 SWI/SNF-related matrix 32.1 6E+02 0.013 28.2 11.6 48 483-531 222-272 (410)
87 PRK02292 V-type ATP synthase s 31.7 3.2E+02 0.007 26.2 8.9 21 509-529 36-56 (188)
88 cd07663 BAR_SNX5 The Bin/Amphi 31.6 5.5E+02 0.012 26.5 10.8 59 485-543 126-193 (218)
89 PF06409 NPIP: Nuclear pore co 31.6 2.3E+02 0.005 29.9 8.2 21 464-485 81-101 (265)
90 TIGR03185 DNA_S_dndD DNA sulfu 31.1 5.7E+02 0.012 29.5 12.1 12 297-308 152-163 (650)
91 PF10147 CR6_interact: Growth 31.0 5.7E+02 0.012 26.5 10.8 70 477-549 126-202 (217)
92 KOG0742 AAA+-type ATPase [Post 30.7 5.9E+02 0.013 29.5 11.6 36 509-544 164-199 (630)
93 PRK08475 F0F1 ATP synthase sub 30.6 5E+02 0.011 25.0 12.0 20 510-529 98-117 (167)
94 KOG0338 ATP-dependent RNA heli 30.6 2.2E+02 0.0048 33.4 8.5 51 464-516 551-606 (691)
95 KOG3756 Pinin (desmosome-assoc 30.1 7.1E+02 0.015 27.5 11.7 12 482-493 153-164 (340)
96 PF12127 YdfA_immunity: SigmaW 29.4 1.2E+02 0.0026 32.7 5.9 43 497-543 229-271 (316)
97 KOG3859 Septins (P-loop GTPase 28.9 6.4E+02 0.014 27.9 11.1 64 476-543 327-390 (406)
98 KOG2129 Uncharacterized conser 28.9 2.4E+02 0.0051 32.2 8.2 93 435-528 116-210 (552)
99 PRK14471 F0F1 ATP synthase sub 28.5 5.1E+02 0.011 24.4 12.5 19 511-529 111-129 (164)
100 TIGR01554 major_cap_HK97 phage 28.2 2.8E+02 0.0061 29.4 8.5 6 490-495 28-33 (378)
101 PF12777 MT: Microtubule-bindi 28.2 3.5E+02 0.0077 28.7 9.2 40 499-539 17-56 (344)
102 cd03404 Band_7_HflK Band_7_Hfl 28.1 5.3E+02 0.012 25.8 10.1 15 529-543 221-235 (266)
103 PF02841 GBP_C: Guanylate-bind 28.0 7E+02 0.015 25.9 11.6 16 482-497 211-226 (297)
104 COG4942 Membrane-bound metallo 27.9 9.2E+02 0.02 27.4 12.5 33 510-543 223-255 (420)
105 PTZ00266 NIMA-related protein 27.7 1.3E+03 0.028 29.0 15.1 7 196-202 202-208 (1021)
106 PF11554 DUF3232: Protein of u 27.4 1.8E+02 0.004 28.5 6.3 59 478-539 51-109 (152)
107 PRK08404 V-type ATP synthase s 27.0 4.5E+02 0.0098 23.7 8.4 14 528-541 56-69 (103)
108 PF05266 DUF724: Protein of un 26.9 6.5E+02 0.014 25.2 10.6 37 482-519 110-146 (190)
109 cd07630 BAR_SNX_like The Bin/A 26.6 6.1E+02 0.013 25.4 10.0 43 460-507 104-149 (198)
110 KOG4055 Uncharacterized conser 26.2 2.7E+02 0.0058 28.6 7.4 17 510-526 113-129 (213)
111 PRK05759 F0F1 ATP synthase sub 25.5 5.4E+02 0.012 23.7 12.4 11 523-533 97-107 (156)
112 PRK14161 heat shock protein Gr 25.3 5.4E+02 0.012 25.5 9.3 25 506-530 53-77 (178)
113 cd07662 BAR_SNX6 The Bin/Amphi 25.2 4E+02 0.0087 27.6 8.6 72 471-545 134-216 (218)
114 PF07767 Nop53: Nop53 (60S rib 25.0 2.9E+02 0.0064 29.7 8.1 75 488-567 276-350 (387)
115 KOG1029 Endocytic adaptor prot 24.6 6.4E+02 0.014 31.1 11.0 34 129-171 31-65 (1118)
116 PF10602 RPN7: 26S proteasome 24.5 3E+02 0.0065 26.6 7.3 28 492-519 2-29 (177)
117 cd07664 BAR_SNX2 The Bin/Amphi 24.4 7.1E+02 0.015 25.6 10.2 81 462-543 122-209 (234)
118 PF01086 Clathrin_lg_ch: Clath 24.4 1.6E+02 0.0034 29.9 5.5 53 468-520 113-165 (225)
119 PF11875 DUF3395: Domain of un 24.3 3.2E+02 0.007 26.2 7.4 26 501-526 10-35 (151)
120 PF10168 Nup88: Nuclear pore c 24.0 3.4E+02 0.0074 32.3 8.9 27 518-544 631-657 (717)
121 PF12925 APP_E2: E2 domain of 23.9 4.3E+02 0.0092 26.9 8.4 62 485-549 41-103 (193)
122 PRK03963 V-type ATP synthase s 23.7 2.7E+02 0.0059 26.8 6.8 25 502-526 19-43 (198)
123 KOG0718 Molecular chaperone (D 23.7 1.9E+02 0.0041 33.3 6.5 27 494-520 400-426 (546)
124 COG1842 PspA Phage shock prote 23.6 8.2E+02 0.018 25.2 13.0 92 475-566 52-160 (225)
125 PF08232 Striatin: Striatin fa 23.5 2.3E+02 0.0049 26.7 6.1 51 470-522 21-71 (134)
126 PF10211 Ax_dynein_light: Axon 23.5 7.3E+02 0.016 24.6 12.0 7 413-419 34-40 (189)
127 PF06936 Selenoprotein_S: Sele 23.4 5.6E+02 0.012 25.9 9.1 9 560-568 160-168 (190)
128 CHL00118 atpG ATP synthase CF0 23.4 6.3E+02 0.014 23.8 13.7 33 511-543 103-135 (156)
129 PTZ00491 major vault protein; 23.2 5.4E+02 0.012 31.5 10.3 55 483-537 700-762 (850)
130 COG0711 AtpF F0F1-type ATP syn 23.1 5.8E+02 0.013 24.4 8.8 21 485-505 66-86 (161)
131 PRK11637 AmiB activator; Provi 22.9 9.2E+02 0.02 26.3 11.3 6 563-568 303-308 (428)
132 COG1390 NtpE Archaeal/vacuolar 22.8 4.4E+02 0.0095 26.4 8.2 54 506-560 12-65 (194)
133 PF07798 DUF1640: Protein of u 22.8 7E+02 0.015 24.1 11.9 47 479-525 55-101 (177)
134 PF10186 Atg14: UV radiation r 22.6 7.7E+02 0.017 24.5 11.7 6 524-529 124-129 (302)
135 PF07888 CALCOCO1: Calcium bin 22.3 9.8E+02 0.021 28.0 11.8 51 480-530 218-270 (546)
136 KOG2668 Flotillins [Intracellu 22.2 8.6E+02 0.019 27.4 10.8 68 476-543 241-312 (428)
137 PF03938 OmpH: Outer membrane 22.2 6.2E+02 0.013 23.2 10.7 19 525-543 86-104 (158)
138 cd07665 BAR_SNX1 The Bin/Amphi 22.0 8.9E+02 0.019 25.0 11.8 83 461-543 121-209 (234)
139 PF05529 Bap31: B-cell recepto 22.0 3.4E+02 0.0073 26.3 7.1 18 498-515 155-172 (192)
140 PRK08404 V-type ATP synthase s 22.0 5.9E+02 0.013 22.9 9.9 43 501-543 51-93 (103)
141 PF06295 DUF1043: Protein of u 21.9 6.4E+02 0.014 23.5 8.6 44 497-540 25-68 (128)
142 COG1579 Zn-ribbon protein, pos 21.7 9.4E+02 0.02 25.2 10.7 43 524-566 115-159 (239)
143 TIGR00570 cdk7 CDK-activating 21.5 6.1E+02 0.013 27.6 9.4 13 488-500 119-131 (309)
144 PF07352 Phage_Mu_Gam: Bacteri 21.5 1.7E+02 0.0037 27.5 4.9 32 502-533 15-46 (149)
145 PRK09173 F0F1 ATP synthase sub 20.9 7E+02 0.015 23.4 12.5 17 513-529 107-123 (159)
146 PF05604 DUF776: Protein of un 20.6 86 0.0019 31.4 2.8 26 269-294 75-100 (178)
147 cd07665 BAR_SNX1 The Bin/Amphi 20.4 9.3E+02 0.02 24.9 10.2 51 488-540 126-180 (234)
148 PRK13665 hypothetical protein; 20.3 2.7E+02 0.0058 30.1 6.4 43 497-543 234-276 (316)
149 PF06428 Sec2p: GDP/GTP exchan 20.0 4.7E+02 0.01 23.9 7.1 39 495-533 6-44 (100)
150 PF04888 SseC: Secretion syste 20.0 4.1E+02 0.009 27.4 7.7 53 504-565 3-56 (306)
No 1
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=100.00 E-value=1.8e-34 Score=256.54 Aligned_cols=108 Identities=42% Similarity=0.651 Sum_probs=105.4
Q ss_pred hhhhhhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008047 462 KKAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSS 541 (579)
Q Consensus 462 k~~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAa 541 (579)
++.+++++++||++|++|+++||+|++++|++|||+||+|||++|+|+|++||+||+.++|||+|+|+.||++||++|++
T Consensus 2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHHHHHHHHHhcccCCCCCc
Q 008047 542 VVAANQDHQVARTSHKAVSFRRTRQMGSL 570 (579)
Q Consensus 542 AE~Arr~ee~~K~~EKA~kiR~TGkiPs~ 570 (579)
++ +++++++++++++|.+||+||++|+.
T Consensus 82 ae-a~r~~~~~k~~ekA~~~R~tG~~P~~ 109 (111)
T PF03763_consen 82 AE-ARRGEEIAKAEEKAAKIRATGKVPSK 109 (111)
T ss_pred HH-HHHhhHHHhHHHHHHHHHhCCCCCcc
Confidence 99 99999999999999999999999943
No 2
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=96.63 E-value=0.023 Score=51.62 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhccc
Q 008047 485 KREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRT 564 (579)
Q Consensus 485 qREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~kiR~T 564 (579)
+..+++|.+||..+++|+....++.|.++.-==..--.|..-+|..++.+.|.+|+.+. .+-.+++..+..+|.-.|..
T Consensus 3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~-ek~~nkia~~~~~Aee~Ra~ 81 (111)
T PF03763_consen 3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKAL-EKMKNKIARAHKKAEEKRAA 81 (111)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999776421111112333456667778888888888 77777777777777766653
No 3
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=85.82 E-value=13 Score=37.07 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 501 KAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 501 KAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
+|+..+...|.+|.+-|.++.+-+.+-...++..+++
T Consensus 102 eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~ 138 (204)
T PRK09174 102 EADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEA 138 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333333333333
No 4
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=78.56 E-value=18 Score=35.16 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=13.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 513 LEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 513 LEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.+..+..+.+.....++.++..-+..|..+.
T Consensus 114 ~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~ 144 (181)
T PRK13454 114 LDVAIAKADAEIAAKAAESEKRIAEIRAGAL 144 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 5
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=75.56 E-value=82 Score=30.60 Aligned_cols=96 Identities=10% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHhhhhhhhhhhcccch-hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008047 459 DWRKKAADAQTSAWDIT-ESTKTISKIKREELRITAWENLQKAKAEAAIRKLE-MKLEKRRSSSMDKIMNKLRSAQKRAQ 536 (579)
Q Consensus 459 e~kk~~~eSkA~AWEEA-EkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE-~KLEKKRA~a~EKm~NKLA~a~rkAE 536 (579)
++.-.+..-.--+||.+ ....-...+++--.-|.+||-.+=+.=|.+|+++. +.||-.+.-..++=++.=.....+-+
T Consensus 48 Eve~IeRaR~KRawEa~Lpp~~d~~~~~kRr~mme~~E~~EW~~RE~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle 127 (154)
T PF14738_consen 48 EVEMIERAREKRAWEAALPPLDDEASLEKRRKMMEEMEWKEWAFREEEIQELQERRLELLKKMLQEREKEQEEANEQRLE 127 (154)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445677765 22333344455555677888888888888888873 34443333333222222222223333
Q ss_pred HHHHhhHHHhhhhHHHHHH
Q 008047 537 EMRSSVVAANQDHQVARTS 555 (579)
Q Consensus 537 EkRAaAE~Arr~ee~~K~~ 555 (579)
..+...+ ..+...+.++.
T Consensus 128 ~~~~~~~-~~k~~~i~ki~ 145 (154)
T PF14738_consen 128 RLWQKKQ-KEKERKIEKIE 145 (154)
T ss_pred HHHHHHH-HHHHHHHHHHH
Confidence 3344444 44444444443
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=70.68 E-value=82 Score=30.75 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 483 KIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 483 RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
|.++-...|..=|+ .|++|++.....|..|.+-|.++.+-.....+.+...|+..|+.++
T Consensus 42 R~~~I~~~L~~Ae~-~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~e 101 (155)
T PRK06569 42 RQTNIQDNITQADT-LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLE 101 (155)
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333 3344445555555555555555554444445555555555555555
No 7
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=68.37 E-value=45 Score=32.13 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 513 LEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 513 LEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.++.+..+.+.....++.++...+..|..+.
T Consensus 110 ~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~ 140 (184)
T PRK13455 110 AEQAKADLEASIARRLAAAEDQIASAEAAAV 140 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 8
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=67.83 E-value=29 Score=38.24 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHH
Q 008047 480 TISKIKREELRI---TAWENLQKAKAEAAIRKLEMKLEKRRSSSM----------DKIMNKLRSAQKRAQEM 538 (579)
Q Consensus 480 ~~~RyqREEAKI---~AWEN~QKAKAEAemrKlE~KLEKKRA~a~----------EKm~NKLA~a~rkAEEk 538 (579)
+..-.++|...+ ..+|-.+|.|||-+-+|+|+.||..|.+-. .|+.+|++....||++.
T Consensus 140 lt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei 211 (561)
T KOG1103|consen 140 LTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEI 211 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 333444443333 468899999999999999999986664421 46778888888888774
No 9
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=66.80 E-value=52 Score=31.32 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008047 526 NKLRSAQKRAQEMRSSV 542 (579)
Q Consensus 526 NKLA~a~rkAEEkRAaA 542 (579)
..++.++...+..|..+
T Consensus 106 ~~~~~A~~~I~~e~~~a 122 (167)
T PRK14475 106 RRAEMAERKIAQAEAQA 122 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 10
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=66.15 E-value=49 Score=36.89 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.3
Q ss_pred HHHHHH
Q 008047 510 EMKLEK 515 (579)
Q Consensus 510 E~KLEK 515 (579)
|.|.+|
T Consensus 342 ~~k~~~ 347 (429)
T PRK00247 342 EAKARK 347 (429)
T ss_pred HHHHHH
Confidence 333333
No 11
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=65.17 E-value=39 Score=33.79 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHh
Q 008047 529 RSAQKRAQEMRSSVVAANQDHQVARTSHKAVSF 561 (579)
Q Consensus 529 A~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~ki 561 (579)
+.|+..|+.++..++ +.+..+.++++-.|..|
T Consensus 208 ~~A~~ea~~~~~~A~-a~~~~~~~~ae~~a~~~ 239 (266)
T cd03404 208 PKARGEAARIIQEAE-AYKEEVIAEAQGEAARF 239 (266)
T ss_pred HHhHhHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 444444444555555 44444444444444333
No 12
>PTZ00121 MAEBL; Provisional
Probab=64.74 E-value=52 Score=42.00 Aligned_cols=7 Identities=0% Similarity=0.596 Sum_probs=3.3
Q ss_pred ecccccc
Q 008047 439 TRWSKKH 445 (579)
Q Consensus 439 arWSkke 445 (579)
+.|+.|.
T Consensus 1263 a~~A~r~ 1269 (2084)
T PTZ00121 1263 AHFARRQ 1269 (2084)
T ss_pred HHHHHHh
Confidence 4455544
No 13
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=63.12 E-value=1.5e+02 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 501 KAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 501 KAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
+|+..+...|.+|++-|.++.+.+.+-.+.+++.+++
T Consensus 76 eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~ 112 (184)
T PRK13455 76 EAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQ 112 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333333
No 14
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=62.76 E-value=46 Score=33.93 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=49.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 487 EELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 487 EEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
++-+++.|+. +|++.+.+++..+..|.+.+...+.+++|.+..++..-++||...+
T Consensus 129 ~~~~~~el~~-ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q 184 (221)
T PF10376_consen 129 EELKQQELEE-EKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQ 184 (221)
T ss_pred chhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 3567778877 6789999999999999999999999999999999999999998777
No 15
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=60.67 E-value=1.6e+02 Score=28.19 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=16.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 510 EMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+...+..++.+.+.....+..++...+..|..+.
T Consensus 96 ~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~ 129 (173)
T PRK13460 96 LKLKNKLLEETNNEVKAQKDQAVKEIELAKGKAL 129 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555554444444444
No 16
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=60.65 E-value=1.7e+02 Score=28.36 Aligned_cols=16 Identities=0% Similarity=-0.072 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHhhH
Q 008047 528 LRSAQKRAQEMRSSVV 543 (579)
Q Consensus 528 LA~a~rkAEEkRAaAE 543 (579)
++.++...+..+..+.
T Consensus 122 ~~~a~~~ie~Ek~~a~ 137 (184)
T CHL00019 122 ENYKNETIRFEQQRAI 137 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 17
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=59.73 E-value=23 Score=41.11 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=41.1
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 008047 475 TESTKTISKIKREELRITAWENLQKAKAEAAIRKLE-------------MKLEKRRSSSMDKIMNKLRSAQKRAQEMRSS 541 (579)
Q Consensus 475 AEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE-------------~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAa 541 (579)
.|+..+..+-.+|+-.-.+||-..++..++++-+|| +.||++|.+.++.-...-.+||++-++.|-+
T Consensus 624 eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERLEreRM~ve~eRr~eqeRihreReelRrq 703 (940)
T KOG4661|consen 624 EERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERLERERMKVEEERRDEQERIHREREELRRQ 703 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHhhc
Confidence 366677777778888888999888888777776666 2334444444444444444455444444433
No 18
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=59.37 E-value=1.9e+02 Score=28.78 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.9
Q ss_pred chhhhcc
Q 008047 413 PIAEIQS 419 (579)
Q Consensus 413 ~i~el~~ 419 (579)
++.||++
T Consensus 31 ~~~~~~~ 37 (205)
T PRK06231 31 NVEELKS 37 (205)
T ss_pred ChhhcCH
Confidence 3444443
No 19
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.29 E-value=1.2e+02 Score=33.66 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhhH
Q 008047 528 LRSAQKRAQEMRSSVV 543 (579)
Q Consensus 528 LA~a~rkAEEkRAaAE 543 (579)
++.++...+..|..+.
T Consensus 99 ~~~a~~~Ie~ek~~a~ 114 (445)
T PRK13428 99 KVQGARQVQLLRAQLT 114 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 20
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.96 E-value=1.4e+02 Score=29.60 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Q 008047 480 TISKIKREELRITAWENLQKAKA-------EAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVA 552 (579)
Q Consensus 480 ~~~RyqREEAKI~AWEN~QKAKA-------EAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~ 552 (579)
..++|+..-....++-..+...+ +.+|..++.+++.... -+..+.+++..+++..++.++..+ .++.+++.
T Consensus 96 ~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~-~~~~l~~~~e~~ek~~~e~~~~~~-k~~~~ei~ 173 (189)
T PF10211_consen 96 TLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEK-QVQELKNKCEQLEKREEELRQEEE-KKHQEEID 173 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34455554444444433333333 3344444443333322 234566778888888888887777 77766665
Q ss_pred HHHHHH
Q 008047 553 RTSHKA 558 (579)
Q Consensus 553 K~~EKA 558 (579)
..+..-
T Consensus 174 ~lk~~~ 179 (189)
T PF10211_consen 174 FLKKQN 179 (189)
T ss_pred HHHHHH
Confidence 544433
No 21
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.49 E-value=1e+02 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.022 Sum_probs=7.3
Q ss_pred cchhhhhhHHHHHHHHH
Q 008047 473 DITESTKTISKIKREEL 489 (579)
Q Consensus 473 EEAEkaK~~~RyqREEA 489 (579)
++.+..++..+.+++..
T Consensus 509 ~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 509 FKEEINVLIEKLSALEK 525 (771)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 22
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=58.45 E-value=82 Score=31.38 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHhh
Q 008047 530 SAQKRAQEMRSSV 542 (579)
Q Consensus 530 ~a~rkAEEkRAaA 542 (579)
.++...+..++.+
T Consensus 148 ~A~~~Ie~Ek~~a 160 (205)
T PRK06231 148 QARQEIEKERREL 160 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 23
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.44 E-value=94 Score=36.90 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=4.6
Q ss_pred ccchhhhhHHH
Q 008047 135 ARNSFSQSLKE 145 (579)
Q Consensus 135 ~~~~~~~~~~e 145 (579)
.++.+|--|.+
T Consensus 145 i~d~aS~eL~~ 155 (782)
T PRK00409 145 VKDSASEKLRG 155 (782)
T ss_pred ECCCCCHHHHH
Confidence 33444444443
No 24
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=58.05 E-value=1.5e+02 Score=32.14 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=51.3
Q ss_pred hhhhhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008047 463 KAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEM 538 (579)
Q Consensus 463 ~~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEk 538 (579)
+.+-.++.+ -+.|+..+..+|++||.-++-==..+-.+...+--.+|..||+.....+.||+.+|..+.+.-..+
T Consensus 80 N~LlKkl~~-l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~ 154 (310)
T PF09755_consen 80 NTLLKKLQQ-LKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAK 154 (310)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555 455677788899999988884434444455555556678888888888888888888886544333
No 25
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=57.99 E-value=1e+02 Score=37.35 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=17.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 511 MKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 511 ~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
+..|++|+++.-.++.|++..+++|++
T Consensus 949 e~ee~k~~k~e~e~kRK~eEeqr~~qe 975 (1259)
T KOG0163|consen 949 EEEEKKRAKAEMETKRKAEEEQRKAQE 975 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666666667777777776654
No 26
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.53 E-value=1.9e+02 Score=28.81 Aligned_cols=7 Identities=57% Similarity=0.790 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 008047 511 MKLEKRR 517 (579)
Q Consensus 511 ~KLEKKR 517 (579)
.+|+.++
T Consensus 98 ~~l~~~~ 104 (302)
T PF10186_consen 98 ESLEQRR 104 (302)
T ss_pred HHHHHHH
Confidence 3333333
No 27
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=57.47 E-value=96 Score=29.67 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 505 AIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 505 emrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
.+...|.+|+.-+.++.+-+.+-...+.+..++
T Consensus 69 ~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~ 101 (173)
T PRK13460 69 LLKDYEARLNSAKDEANAIVAEAKSDALKLKNK 101 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333333333333
No 28
>PTZ00121 MAEBL; Provisional
Probab=57.33 E-value=87 Score=40.22 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHH
Q 008047 522 DKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTS 555 (579)
Q Consensus 522 EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~ 555 (579)
|-.+.+...+.++|++.|-.+|+|+...++.+++
T Consensus 1318 ee~~kkae~~~kka~~~~k~~e~~kk~~e~~~~~ 1351 (2084)
T PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351 (2084)
T ss_pred HHHHHhHHHHHhhhHHHHhhHHHHHhHHHhhhhh
Confidence 3344555555666666666665555555554444
No 29
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=56.96 E-value=69 Score=36.71 Aligned_cols=120 Identities=14% Similarity=0.281 Sum_probs=68.5
Q ss_pred eccccccccccCCCCchhhHHHhhhhhhhhhhcccchhh---------hhhHHHHHHHHHhHHHHH----HHHHHHHHHH
Q 008047 439 TRWSKKHRTRTSGKSSEIVDDWRKKAADAQTSAWDITES---------TKTISKIKREELRITAWE----NLQKAKAEAA 505 (579)
Q Consensus 439 arWSkkee~~~s~k~s~~v~e~kk~~~eSkA~AWEEAEk---------aK~~~RyqREEAKI~AWE----N~QKAKAEAe 505 (579)
++|...|... .+....+++-..+.+..-...|+++|. .-++.+||+. +.+-| +.++.-.|..
T Consensus 242 ~n~TnEH~~F--~kAkmrleekhr~rmd~VmkEW~~ae~qaKnPKAekqalnqhFQ~~---v~sLEee~a~erqqlvetH 316 (615)
T KOG3540|consen 242 ANFTNEHADF--QKAKMRLEEKHRKRMDKVMKEWEEAETQAKNPKAEKQALNQHFQKT---VSSLEEEAARERQQLVETH 316 (615)
T ss_pred hhccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3554444322 222333444445556666677777653 3334444433 33333 2334456677
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH----HHHH---------HHHHHHhhHHHhhhhHHHHHH-HHHHHhccc
Q 008047 506 IRKLEMKLEKRRSSSMDKIMNKLRS----AQKR---------AQEMRSSVVAANQDHQVARTS-HKAVSFRRT 564 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~NKLA~----a~rk---------AEEkRAaAE~Arr~ee~~K~~-EKA~kiR~T 564 (579)
+.+.|.-|--+|.-++|-|..-|+. .|+. ||+|-.+-. -++-++++++- +||+.||.+
T Consensus 317 ~~RV~AmlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HT-lrhyqHv~~vDpkkAaqmk~q 388 (615)
T KOG3540|consen 317 EARVEAMLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHT-LRHYQHVLAVDPKKAAQMKSQ 388 (615)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHH
Confidence 8888888888888888888776653 3443 444444444 56677777664 788888754
No 30
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.93 E-value=1.5e+02 Score=33.55 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=4.4
Q ss_pred HHhHHHHHH
Q 008047 488 ELRITAWEN 496 (579)
Q Consensus 488 EAKI~AWEN 496 (579)
+.+|+..|+
T Consensus 75 e~rL~qrE~ 83 (514)
T TIGR03319 75 RNELQRLER 83 (514)
T ss_pred HHHHHHHHH
Confidence 444544444
No 31
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=56.86 E-value=1.9e+02 Score=27.82 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 514 EKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 514 EKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+...+.+.+.....++.++...+..+..+.
T Consensus 102 ~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~ 131 (173)
T PRK13453 102 EQIIHEANVRANGMIETAQSEINSQKERAI 131 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443333
No 32
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=56.12 E-value=1.6e+02 Score=26.79 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 514 EKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 514 EKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+.+++.+.+.....+..++...+..+..+.
T Consensus 89 ~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~ 118 (140)
T PRK07353 89 AEALAEAQAEAQASKEKARREIEQQKQAAL 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333333
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=55.41 E-value=2.2e+02 Score=32.39 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 008047 508 KLEMKLE 514 (579)
Q Consensus 508 KlE~KLE 514 (579)
+.|.+|+
T Consensus 80 qrE~rL~ 86 (514)
T TIGR03319 80 RLERRLL 86 (514)
T ss_pred HHHHHHH
Confidence 3333333
No 34
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.72 E-value=2.2e+02 Score=27.92 Aligned_cols=85 Identities=16% Similarity=0.320 Sum_probs=42.0
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008047 475 TESTKTISKIKREELRITAWENLQKA------------------KAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQ 536 (579)
Q Consensus 475 AEkaK~~~RyqREEAKI~AWEN~QKA------------------KAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAE 536 (579)
+...++..+|..-+..|..|+..=+. ..+.++..++..++.-. ...++|++.|..+..+-+
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~-~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAE-AQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34456667888888888888864222 22222333333333222 234455555555555555
Q ss_pred HHHHhhHHHhhhhHHHHHHHHHHH
Q 008047 537 EMRSSVVAANQDHQVARTSHKAVS 560 (579)
Q Consensus 537 EkRAaAE~Arr~ee~~K~~EKA~k 560 (579)
+++...+...-....+++..++..
T Consensus 130 e~k~k~~~l~ar~~~a~a~~~~~~ 153 (221)
T PF04012_consen 130 ELKSKREELKARENAAKAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444433333334444444443
No 35
>PRK10698 phage shock protein PspA; Provisional
Probab=54.03 E-value=2.1e+02 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.435 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHH
Q 008047 475 TESTKTISKIKREELRITAWENL 497 (579)
Q Consensus 475 AEkaK~~~RyqREEAKI~AWEN~ 497 (579)
+....+..+|...+..|..|+..
T Consensus 52 A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888888763
No 36
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=53.65 E-value=1.2e+02 Score=29.04 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008047 502 AEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRS 540 (579)
Q Consensus 502 AEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRA 540 (579)
|++.+.+.|.+|++-|..+.+-+.+--+.+...+++.+.
T Consensus 56 a~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~ 94 (161)
T COG0711 56 AQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKA 94 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444333
No 37
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=52.69 E-value=75 Score=36.75 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHhhHH
Q 008047 495 ENLQKAKAEAAIRKLEMKLEKRRSSSMD-KIMNKLRSAQKRAQEMRSSVVA 544 (579)
Q Consensus 495 EN~QKAKAEAemrKlE~KLEKKRA~a~E-Km~NKLA~a~rkAEEkRAaAE~ 544 (579)
+..++-.||.+-++-|+.+-+|+-.-++ +++.+++.++.|+|++|..+++
T Consensus 219 ~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekqeee~ke~e~ 269 (591)
T KOG2412|consen 219 SEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQEEERKEAEE 269 (591)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333222 3466777777788888888874
No 38
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.63 E-value=1.6e+02 Score=35.00 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 008047 521 MDKIMNKLRSAQKR 534 (579)
Q Consensus 521 ~EKm~NKLA~a~rk 534 (579)
.+++..-|+.+.+.
T Consensus 572 ~~~a~~~l~~a~~~ 585 (782)
T PRK00409 572 EKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 39
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.15 E-value=53 Score=37.02 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=45.9
Q ss_pred hhhhhhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008047 462 KKAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRA 535 (579)
Q Consensus 462 k~~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkA 535 (579)
.+++..++-||.+.. .-.---|++||.-++-=-..+-.+..-+-=++|+-||+.+.-...|+||||+..+-+.
T Consensus 102 sntLlkkiqal~kek-etla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t 174 (552)
T KOG2129|consen 102 SNTLLKKIQALFKEK-ETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKT 174 (552)
T ss_pred HHHHHHHHHHhhccc-cccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 346667778886543 3333457777654443333333344444446788888888888889998888776654
No 40
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.12 E-value=73 Score=32.75 Aligned_cols=40 Identities=28% Similarity=0.495 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008047 498 QKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEM 538 (579)
Q Consensus 498 QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEk 538 (579)
+.++..+++.|+|.+||+ +...+|+..++.....+.+|+.
T Consensus 152 ~~~~~~~~~~kL~~el~~-~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEK-KQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 346677777777777776 4455666666666666666654
No 41
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=51.88 E-value=2.4e+02 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008047 502 AEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEM 538 (579)
Q Consensus 502 AEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEk 538 (579)
|+..+.++|.+|++-|.++.+.+.+-.+.+.+..++.
T Consensus 81 A~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~ 117 (181)
T PRK13454 81 AVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA 117 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333333
No 42
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.59 E-value=69 Score=38.00 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=60.8
Q ss_pred hhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHH-HHHHHHhhH
Q 008047 469 TSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLE----KRRSSSMDKIMNKLRSAQKR-AQEMRSSVV 543 (579)
Q Consensus 469 A~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLE----KKRA~a~EKm~NKLA~a~rk-AEEkRAaAE 543 (579)
.+.|.++|..-+....+.|..-+.|.++.-|+.+|++.++.-.+|| -.|+-+.+||-.+++.++.. +|..| ...
T Consensus 815 lde~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele~rvslrra~lEqkieeE~~~~~~~Rserir-~l~ 893 (948)
T KOG0577|consen 815 LDEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELEQRVSLRRALLEQKIEEELAQLQTERSERIR-SLL 893 (948)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccchHHHH-HHh
Confidence 4679999999999999999999999999999999887766544444 56888888888888877653 34444 344
Q ss_pred HHhhhhHH
Q 008047 544 AANQDHQV 551 (579)
Q Consensus 544 ~Arr~ee~ 551 (579)
.++..++
T Consensus 894 -er~~~e~ 900 (948)
T KOG0577|consen 894 -ERHAREI 900 (948)
T ss_pred -hhhHHHH
Confidence 3444443
No 43
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=51.55 E-value=2.2e+02 Score=27.10 Aligned_cols=21 Identities=5% Similarity=0.075 Sum_probs=9.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 008047 511 MKLEKRRSSSMDKIMNKLRSA 531 (579)
Q Consensus 511 ~KLEKKRA~a~EKm~NKLA~a 531 (579)
.++++.|..+++.+++.+..+
T Consensus 113 ~~I~~e~~~a~~el~~e~~~l 133 (167)
T PRK14475 113 RKIAQAEAQAAADVKAAAVDL 133 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 44
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=50.15 E-value=1.6e+02 Score=30.18 Aligned_cols=25 Identities=4% Similarity=0.217 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 008047 506 IRKLEMKLEKRRSSSMDKIMNKLRS 530 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~NKLA~ 530 (579)
+.+...+.++.|.+++++.+.+++.
T Consensus 77 i~~A~~eA~~~~~~il~~A~~ea~~ 101 (250)
T PRK14474 77 MAQAQEAADEQRQHLLNEAREDVAT 101 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 45
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=50.10 E-value=2.2e+02 Score=26.62 Aligned_cols=10 Identities=0% Similarity=0.205 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 008047 528 LRSAQKRAQE 537 (579)
Q Consensus 528 LA~a~rkAEE 537 (579)
++.++..++.
T Consensus 94 ~~~A~~~~~~ 103 (141)
T PRK08476 94 IEAKKAELES 103 (141)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 46
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=49.95 E-value=1.7e+02 Score=26.87 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=11.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 516 RRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 516 KRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
....+.+.....+..++...+..+..+.
T Consensus 81 ~~~~a~~e~~~~~~~a~~~i~~e~~~a~ 108 (147)
T TIGR01144 81 AKAEAREEREKIKAQARAEIEAEKEQAR 108 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443
No 47
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.50 E-value=1.6e+02 Score=31.74 Aligned_cols=25 Identities=0% Similarity=0.080 Sum_probs=17.6
Q ss_pred hhhhhhhhcccchhhhhhHHHHHHH
Q 008047 463 KAADAQTSAWDITESTKTISKIKRE 487 (579)
Q Consensus 463 ~~~eSkA~AWEEAEkaK~~~RyqRE 487 (579)
...++++..|++..+..|...-.++
T Consensus 116 ~~te~~l~~y~~~n~~~I~~n~~~~ 140 (309)
T TIGR00570 116 ENTKKKIETYQKENKDVIQKNKEKS 140 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5588889999988777776543333
No 48
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=49.20 E-value=91 Score=33.66 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008047 479 KTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEM 538 (579)
Q Consensus 479 K~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEk 538 (579)
|...--++++.+|..||-+.-|.+++.....-..-++.|+...-+-.--++.+.++|.|.
T Consensus 233 K~fkEqeK~~k~~rkWereagar~~a~aa~k~kae~k~kae~ea~a~asa~a~kkkaKE~ 292 (379)
T COG5269 233 KSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEV 292 (379)
T ss_pred hhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHhHHHH
Confidence 444455678889999998877765554433322223555655555555556666666553
No 49
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=48.45 E-value=96 Score=32.27 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHhhHHHhh----hhHHHHHHHH
Q 008047 498 QKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKR-------AQEMRSSVVAANQ----DHQVARTSHK 557 (579)
Q Consensus 498 QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rk-------AEEkRAaAE~Arr----~ee~~K~~EK 557 (579)
..+|.|..|+.||.++|| |-+-++++++.|..+..+ |.+|-+++++|++ -++..|.+++
T Consensus 68 eq~k~e~~m~~Lea~VEk-rD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyAHr 137 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEK-RDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYAHR 137 (272)
T ss_pred hHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 346789999999999997 888899999998887765 4455455544444 2445554433
No 50
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=47.94 E-value=2.4e+02 Score=26.40 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008047 506 IRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMR 539 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkR 539 (579)
....|..|..-|.++.+.+..-++.++..+++++
T Consensus 61 ~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~ 94 (141)
T PRK08476 61 EHEIETILKNAREEANKIRQKAIAKAKEEAEKKI 94 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333444444444333
No 51
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.79 E-value=2.1e+02 Score=33.82 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHhhH
Q 008047 477 STKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDK---------IMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 477 kaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EK---------m~NKLA~a~rkAEEkRAaAE 543 (579)
..++..+.++.+..|..-+..= ...++++.+||.+|+..|.+.-.+ +.++|....++-++++..++
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~-ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 424 IKKLEETVERLEEENSELKREL-EELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433221 122355666666666666554433 45556666666666655555
No 52
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=46.29 E-value=12 Score=33.43 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 501 KAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 501 KAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.++.++..++.+|..-+. ..+.+.+.|..+++.++++.+.|+
T Consensus 43 ~L~~~~~~l~~~l~~~~~-~~~~l~~~l~~aq~~a~~~~~~A~ 84 (131)
T PF05103_consen 43 ELKEEIEELQAQLEELRE-EEESLQRALIQAQETADEIKAEAE 84 (131)
T ss_dssp HHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHhhhhhhhh-HHHHHHHhhhhhhhhHHHHHHHHH
Confidence 344444444444444332 244555556666666666555554
No 53
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.71 E-value=53 Score=30.55 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008047 488 ELRITAWENLQKAKAEAAIRKLEMKLEKRRS 518 (579)
Q Consensus 488 EAKI~AWEN~QKAKAEAemrKlE~KLEKKRA 518 (579)
..+...|-...+++.+.+|||.|.++++++.
T Consensus 117 ~~klk~~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 117 LQKLKNQLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555544444444443
No 54
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.55 E-value=2e+02 Score=35.07 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=5.6
Q ss_pred ccCCCcccccc
Q 008047 370 KDAATDVSRTI 380 (579)
Q Consensus 370 kD~~T~~~rsV 380 (579)
..-+|.-+|+|
T Consensus 658 ~stGt~FiRCi 668 (1259)
T KOG0163|consen 658 ESTGTHFIRCI 668 (1259)
T ss_pred HhcCCeeEEee
Confidence 33455555555
No 55
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=45.48 E-value=3.1e+02 Score=26.93 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 008047 506 IRKLEMKLEKRRSSSMDKIM 525 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~ 525 (579)
++..+.++++.+..+.+|..
T Consensus 33 ~~ea~~~a~~~~~~~~~k~~ 52 (185)
T PRK01194 33 EKECDSKIQSIKEYYEKKMR 52 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444
No 56
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=44.60 E-value=1.8e+02 Score=28.31 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=6.6
Q ss_pred HHHHHHHhhHHHHHHHH
Q 008047 510 EMKLEKRRSSSMDKIMN 526 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~N 526 (579)
+..-++.+..+.++...
T Consensus 80 ~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 80 NEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444443333
No 57
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=44.17 E-value=3.5e+02 Score=27.17 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=22.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Q 008047 511 MKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVAR 553 (579)
Q Consensus 511 ~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K 553 (579)
...+..+..+.+.+...++.+++..+..|..+. ..-...+..
T Consensus 134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~-~el~~~a~e 175 (204)
T PRK09174 134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAM-ADVGSIAEE 175 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344455555666666666666666555555555 433333333
No 58
>PRK12705 hypothetical protein; Provisional
Probab=43.61 E-value=2.8e+02 Score=31.82 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.5
Q ss_pred hhhhhcccch
Q 008047 466 DAQTSAWDIT 475 (579)
Q Consensus 466 eSkA~AWEEA 475 (579)
++...++++.
T Consensus 52 ~~~~~~~~~~ 61 (508)
T PRK12705 52 AALLEAKELL 61 (508)
T ss_pred HHHHHHHHHH
Confidence 3344445543
No 59
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=43.56 E-value=1.7e+02 Score=30.09 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=22.6
Q ss_pred hhhhhhhhh---cccchhhhhhHHHHHHHHHhHHHHHHHHHH
Q 008047 462 KKAADAQTS---AWDITESTKTISKIKREELRITAWENLQKA 500 (579)
Q Consensus 462 k~~~eSkA~---AWEEAEkaK~~~RyqREEAKI~AWEN~QKA 500 (579)
|..+..++. .||.++++-...|++ ..+|..||..++.
T Consensus 122 K~ll~rR~ral~~~e~A~~~L~KaR~k--~kev~~aE~~~~e 161 (218)
T cd07663 122 KDLLYRRARALADYENSNKALDKARLK--SKDVKQAEAHQQE 161 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 444444544 467777776666653 4556777777664
No 60
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.25 E-value=2.8e+02 Score=33.12 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 502 AEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 502 AEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
.|.+.++++.+-++...++.++...-|..+.+.+++
T Consensus 548 l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 548 LEQEMEELKERERNKKLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444433333
No 61
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=41.98 E-value=1.4e+02 Score=33.11 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHH
Q 008047 513 LEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVS 560 (579)
Q Consensus 513 LEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~k 560 (579)
.|+.+.++...-...+..|+..|+...+.|+ |.+.+.+++++-.|+.
T Consensus 261 ~~~~i~eAeayan~iip~A~gea~~ii~~Ae-Ayr~~~i~~AeGda~r 307 (419)
T PRK10930 261 EQQYIREAEAYTNEVQPRANGQAQRILEEAR-AYKAQTILEAQGEVAR 307 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHH
Confidence 3344444444444455566666666666666 6666666666554443
No 62
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.96 E-value=3.3e+02 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=11.0
Q ss_pred HHHHHHHHHHH-HHHHHHHhhH
Q 008047 523 KIMNKLRSAQK-RAQEMRSSVV 543 (579)
Q Consensus 523 Km~NKLA~a~r-kAEEkRAaAE 543 (579)
-|+++|.+-++ ++.+++..+.
T Consensus 154 ~~k~EL~rF~~~Rv~~fk~~l~ 175 (198)
T cd07630 154 LAKKELERFHRQRVLELQSALV 175 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554443 5666666555
No 63
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=41.00 E-value=92 Score=27.53 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008047 481 ISKIKREELRITAWENLQKAKAEAAI 506 (579)
Q Consensus 481 ~~RyqREEAKI~AWEN~QKAKAEAem 506 (579)
.++....+++|..|+.++||++.|+.
T Consensus 31 ~~~l~~~~e~~Rei~a~eKav~da~~ 56 (81)
T KOG4326|consen 31 LRQLREYHEDIREIDAHEKAVADAEE 56 (81)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 34667778999999999999988754
No 64
>PTZ00491 major vault protein; Provisional
Probab=40.83 E-value=1.9e+02 Score=35.12 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=37.8
Q ss_pred hhhhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008047 464 AADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEM 511 (579)
Q Consensus 464 ~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~ 511 (579)
++++...|=|-+-.+|..++.+-|-+.|.+=-+.+.|+.+|+-.+||.
T Consensus 703 el~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~ 750 (850)
T PTZ00491 703 ELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEA 750 (850)
T ss_pred HHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhh
Confidence 556777788888888888888888888888888888877777777763
No 65
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=40.69 E-value=3.1e+02 Score=33.59 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=12.4
Q ss_pred CCCCCCCCCcccC--------ccccCCCCC
Q 008047 192 TFPSPGTPNYRNA--------SVGMHKGWS 213 (579)
Q Consensus 192 ~FpSPGtPnY~~~--------~~~~qKGWs 213 (579)
+|---|-|-|+-. .--|+|--.
T Consensus 284 VF~~sgn~LfHAaAw~k~f~l~k~~~K~~T 313 (988)
T KOG2072|consen 284 VFWKSGNPLFHAAAWLKLFKLYKNMNKNLT 313 (988)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHhccccc
Confidence 5666676666432 124666666
No 66
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=40.65 E-value=4.1e+02 Score=29.38 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=17.3
Q ss_pred hhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 008047 466 DAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEA 504 (579)
Q Consensus 466 eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEA 504 (579)
+.++.+=+|+++.|...-.+++-..+.-=+..-++|||+
T Consensus 151 ~a~aka~aEA~k~Ka~aeAkkkAe~a~kA~eeAkaKAe~ 189 (387)
T COG3064 151 AAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEA 189 (387)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555455444444433333333333444444
No 67
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=40.37 E-value=3.2e+02 Score=25.73 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 520 SMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 520 a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+.+.....++.++...+..+..+.
T Consensus 98 A~~ea~~~~~~a~~~i~~ek~~a~ 121 (164)
T PRK14471 98 AQVEGDKMIEQAKASIESEKNAAM 121 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 68
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.98 E-value=4.3e+02 Score=29.72 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 008047 506 IRKLEMKLEKRRSSSMDKIMNKLR 529 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~NKLA 529 (579)
.+++..++++.+.+..++|..+|.
T Consensus 309 ~~~~~~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 309 EEELREEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 69
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=39.83 E-value=65 Score=37.10 Aligned_cols=40 Identities=35% Similarity=0.450 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008047 494 WENLQKAKAEAAIRK--LEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVA 544 (579)
Q Consensus 494 WEN~QKAKAEAemrK--lE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~ 544 (579)
.|..|+-.-||..|| +|.+.|+||.+ +.|+|||-|+-.|+
T Consensus 397 lekqqrraeear~rkqqleae~e~kree-----------arrkaeeer~~kee 438 (708)
T KOG3654|consen 397 LEKQQRRAEEARRRKQQLEAEKEQKREE-----------ARRKAEEERAPKEE 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHhhhcchhh
Confidence 355555555666665 46666666654 56777777777664
No 70
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=39.77 E-value=2.4e+02 Score=29.06 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=21.0
Q ss_pred ccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008047 472 WDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLE 510 (579)
Q Consensus 472 WEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE 510 (579)
.-+++++|++.||-...++.++=--.+-++|.|++.++|
T Consensus 132 ~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~e 170 (225)
T KOG4848|consen 132 FREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLE 170 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence 345666777777666555554444444444444444444
No 71
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.11 E-value=5.9e+02 Score=28.38 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Q 008047 510 EMKLEKRRSSSMDKIMNKLRSAQKR 534 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~NKLA~a~rk 534 (579)
+.++|+.|..+++.+++++...--.
T Consensus 103 ~~~Ie~ek~~a~~elr~ei~~lAv~ 127 (445)
T PRK13428 103 ARQVQLLRAQLTRQLRLELGHESVR 127 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666554443
No 72
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=38.58 E-value=1e+02 Score=29.55 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhH
Q 008047 510 EMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQ 550 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee 550 (579)
+.++++.|....+.|..+.+.|....+.|+..++ .++..|
T Consensus 8 ~~~~~~~r~~~~~~~~~~r~eA~~~~~lm~~~a~-r~~~~E 47 (151)
T PF11875_consen 8 KREIEEQREKNKEEIAEKRAEAESAIELMKETAE-RKQRKE 47 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3344444444555555555555555566666666 444433
No 73
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.67 E-value=2.8e+02 Score=35.02 Aligned_cols=66 Identities=17% Similarity=0.341 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhcccCCCCCccccc
Q 008047 505 AIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQMGSLSGCF 574 (579)
Q Consensus 505 emrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~kiR~TGkiPs~~gCF 574 (579)
++++++.+|+++|..... +...+.....+++|++++....+-..++++ ....+...|++|++.|=.
T Consensus 557 e~~~~~k~l~~~~~e~~~-~~~~~~~~rqrveE~ks~~~~~~s~~kVl~---al~r~kesG~i~Gf~GRL 622 (1293)
T KOG0996|consen 557 ELKEKEKELPKLRKEERN-LKSQLNKLRQRVEEAKSSLSSSRSRNKVLD---ALMRLKESGRIPGFYGRL 622 (1293)
T ss_pred HHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcCCCCcccccc
Confidence 444445555555544332 333445677778888876652444555443 455667899999887643
No 74
>PRK11637 AmiB activator; Provisional
Probab=37.53 E-value=4.6e+02 Score=28.51 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008047 500 AKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEM 538 (579)
Q Consensus 500 AKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEk 538 (579)
.+++.+|+.++.+|+... ..++.+..+|+.++...+..
T Consensus 71 ~~~~~~l~~l~~qi~~~~-~~i~~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 71 ASLLAQLKKQEEAISQAS-RKLRETQNTLNQLNKQIDEL 108 (428)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665542 23333444444444443333
No 75
>PF15392 Joubert: Joubert syndrome-associated
Probab=37.33 E-value=1.2e+02 Score=32.92 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=41.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Q 008047 483 KIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDK----------IMNKLRSAQKRAQEMRSSVVAANQDHQVA 552 (579)
Q Consensus 483 RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EK----------m~NKLA~a~rkAEEkRAaAE~Arr~ee~~ 552 (579)
|-++|..+|++|=.. |-...|...-.+|+.+|..-..= --++|+..+|+-+||..........+.++
T Consensus 51 RtekERrEIq~WMkR---KrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdRllLseH~s~Rvs 127 (329)
T PF15392_consen 51 RTEKERREIQAWMKR---KRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDRLLLSEHYSRRVS 127 (329)
T ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999543 33445555555566666543322 25788888888888876555233333333
Q ss_pred H
Q 008047 553 R 553 (579)
Q Consensus 553 K 553 (579)
.
T Consensus 128 Q 128 (329)
T PF15392_consen 128 Q 128 (329)
T ss_pred H
Confidence 3
No 76
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.73 E-value=2.5e+02 Score=27.10 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=36.8
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 475 TESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 475 AEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.-.-.+..++-+.++++.+....-+...++..+- +.+-+++-..-+++++++|+.++.-.+.++.+++
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKL-LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666665555444333322221 2223334455667777777777777777776666
No 77
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=36.13 E-value=4.5e+02 Score=26.20 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 476 ESTKTISKIKREELRITAWENLQKA------------------KAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 476 EkaK~~~RyqREEAKI~AWEN~QKA------------------KAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
.......+|...+..|..||+.=+. ..+..+..++..++..+ ..++++..+|...+++-++
T Consensus 53 ~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~-~~v~~l~~~l~~L~~ki~~ 131 (219)
T TIGR02977 53 DKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE-ETLAKLQEDIAKLQAKLAE 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3445566788888888888874332 22333444444444432 3445566666666655555
Q ss_pred HHHh
Q 008047 538 MRSS 541 (579)
Q Consensus 538 kRAa 541 (579)
.|+.
T Consensus 132 ~k~k 135 (219)
T TIGR02977 132 ARAR 135 (219)
T ss_pred HHHH
Confidence 5443
No 78
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.62 E-value=4.9e+02 Score=26.40 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 008047 511 MKLEKRRSSSMDKIMNKLRS 530 (579)
Q Consensus 511 ~KLEKKRA~a~EKm~NKLA~ 530 (579)
..+|..+..+++.+++++..
T Consensus 108 ~~ie~E~~~a~~~l~~ei~~ 127 (246)
T TIGR03321 108 EALRREQAALSDELRRRTGA 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 79
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=34.68 E-value=78 Score=26.85 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=33.7
Q ss_pred HHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 008047 487 EELRITAWENLQKA-KAEAAIRKLEMKLEKRRSSSMDKIMNK 527 (579)
Q Consensus 487 EEAKI~AWEN~QKA-KAEAemrKlE~KLEKKRA~a~EKm~NK 527 (579)
.+.+++-||-++|. |=-.+++.++.+|.++|...++-.-++
T Consensus 20 l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~FLn~~v~~ 61 (62)
T PF06034_consen 20 LTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNFLNFGVNN 61 (62)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788889998875 666789999999999999988876654
No 80
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=34.13 E-value=5.2e+02 Score=26.35 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHhHHHH-HHH---HHH--HHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHH
Q 008047 478 TKTISKIKREELRITAW-ENL---QKA--KAEAAIRKLEMKLEKRRSSSMDKIMN---KLRSAQKRAQE 537 (579)
Q Consensus 478 aK~~~RyqREEAKI~AW-EN~---QKA--KAEAemrKlE~KLEKKRA~a~EKm~N---KLA~a~rkAEE 537 (579)
+.+..||++....|..+ .|. ++. -.++.+++.+.+.+.+++++.+||.+ +|+.+++.++.
T Consensus 93 sdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~ 161 (207)
T PF05010_consen 93 SDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQA 161 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35566999998888887 443 222 23567888889999999999998853 55555555443
No 81
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=33.67 E-value=7.4e+02 Score=27.93 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=13.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Q 008047 509 LEMKLEKRRSSSMDKIMNKLRSAQ 532 (579)
Q Consensus 509 lE~KLEKKRA~a~EKm~NKLA~a~ 532 (579)
|+.+|++....+.+++.|.|....
T Consensus 331 L~~eL~~~~~~~~~~l~~~l~~~~ 354 (582)
T PF09731_consen 331 LRQELKRQEEAHEEHLKNELREQA 354 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666655433
No 82
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.65 E-value=5.3e+02 Score=28.38 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=5.6
Q ss_pred ccccccCC
Q 008047 571 SGCFTCHA 578 (579)
Q Consensus 571 ~gCF~cha 578 (579)
-.|.+||.
T Consensus 285 ~~Cp~C~~ 292 (562)
T PHA02562 285 GVCPTCTQ 292 (562)
T ss_pred CCCCCCCC
Confidence 36888874
No 83
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=33.13 E-value=3.2e+02 Score=23.60 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 503 EAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 503 EAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
+.+|+.+...++.......++..+++..+..++++
T Consensus 4 ~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~ 38 (94)
T PF05957_consen 4 KAELEQLRADLEDLARSAADLAGEKADEARDRAEE 38 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444444444
No 84
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=32.64 E-value=3.5e+02 Score=32.12 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHH
Q 008047 483 KIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVART 554 (579)
Q Consensus 483 RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~ 554 (579)
|.-+|...|.+=-.+.-...|++-+++..++|+.+-+ +|.++..|-..+..-+..+-.+|||++..++++.
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k-iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTK-IEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777777766666666666666666666665544 3445555555555555555556655555554443
No 85
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.50 E-value=4.5e+02 Score=32.79 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008047 476 ESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEK 515 (579)
Q Consensus 476 EkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEK 515 (579)
+...+.+..+..+.+|..|-...+.+++.++..++..+++
T Consensus 657 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 696 (1201)
T PF12128_consen 657 DLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQ 696 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667777777777777777777766644443
No 86
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=32.05 E-value=6e+02 Score=28.17 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHH
Q 008047 483 KIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSM---DKIMNKLRSA 531 (579)
Q Consensus 483 RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~---EKm~NKLA~a 531 (579)
|.+-.+..+++---+| .|.||+|..||.+-+.++.+.+ +-|+|+|.++
T Consensus 222 RMqvlkrQv~SL~~HQ-~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~ 272 (410)
T KOG4715|consen 222 RMQVLKRQVQSLMVHQ-RKLEAELLQIEERHQEKKRKFLESTDSFNNELKRL 272 (410)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 5566666677776666 4788888888888875554433 4566666653
No 87
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=31.67 E-value=3.2e+02 Score=26.19 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=8.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 008047 509 LEMKLEKRRSSSMDKIMNKLR 529 (579)
Q Consensus 509 lE~KLEKKRA~a~EKm~NKLA 529 (579)
.+.+.++.+..+.++......
T Consensus 36 a~~~a~~i~~~~~~~a~~e~~ 56 (188)
T PRK02292 36 AEADAEEILEDREAEAEREIE 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333333
No 88
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=31.59 E-value=5.5e+02 Score=26.45 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHH-------HHHHHHHHH-HHHHHHHhhH
Q 008047 485 KREELRITAWENLQKAKAEAAIRKLEMK-LEKRRSSSMDKI-------MNKLRSAQK-RAQEMRSSVV 543 (579)
Q Consensus 485 qREEAKI~AWEN~QKAKAEAemrKlE~K-LEKKRA~a~EKm-------~NKLA~a~r-kAEEkRAaAE 543 (579)
.+---..+.|||.+++-.++.+++.++. .|.+-..+.+++ +.+|.+-+. +...+|....
T Consensus 126 ~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lv 193 (218)
T cd07663 126 YRRARALADYENSNKALDKARLKSKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLI 193 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567899999998887777776654 566555554443 444444332 3444554443
No 89
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=31.58 E-value=2.3e+02 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=9.6
Q ss_pred hhhhhhhcccchhhhhhHHHHH
Q 008047 464 AADAQTSAWDITESTKTISKIK 485 (579)
Q Consensus 464 ~~eSkA~AWEEAEkaK~~~Ryq 485 (579)
.++.....|.-.| +|...+.+
T Consensus 81 gled~~t~~r~~e-akvraei~ 101 (265)
T PF06409_consen 81 GLEDLFTLWRHME-AKVRAEIR 101 (265)
T ss_pred cHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444554443 44444444
No 90
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.12 E-value=5.7e+02 Score=29.51 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=8.9
Q ss_pred cccCcccccccc
Q 008047 297 MFDGGNFVNFMA 308 (579)
Q Consensus 297 ~~d~~~v~~~~a 308 (579)
+|||..+..+..
T Consensus 152 fFDGE~I~~la~ 163 (650)
T TIGR03185 152 FFDGEKIEALAN 163 (650)
T ss_pred cccHHHHHHHhc
Confidence 788888777654
No 91
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=30.95 E-value=5.7e+02 Score=26.47 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 008047 477 STKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSM-------DKIMNKLRSAQKRAQEMRSSVVAANQDH 549 (579)
Q Consensus 477 kaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~-------EKm~NKLA~a~rkAEEkRAaAE~Arr~e 549 (579)
+++.+++|....+++.+=...+++++.++-.+.|.-+|..|-+.- ++++.-|+ ++..|+++..-+ +++..
T Consensus 126 Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~--~kEkeeKKk~K~-aKkk~ 202 (217)
T PF10147_consen 126 IAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQ--EKEKEEKKKKKE-AKKKE 202 (217)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHH--HHHHHHHHHHHH-HHHHH
Confidence 333444444443333333334445555555555555555553321 22222222 445556655555 44433
No 92
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=5.9e+02 Score=29.52 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008047 509 LEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVA 544 (579)
Q Consensus 509 lE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~ 544 (579)
.|.++|..|-...|-++..-+.+.++-+-+|+..|+
T Consensus 164 ~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~ 199 (630)
T KOG0742|consen 164 YEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQ 199 (630)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHH
Confidence 344444444444454444555666666666666663
No 93
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=30.61 E-value=5e+02 Score=24.99 Aligned_cols=20 Identities=0% Similarity=-0.081 Sum_probs=8.1
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 008047 510 EMKLEKRRSSSMDKIMNKLR 529 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~NKLA 529 (579)
..+.++.+..++++.+++..
T Consensus 98 ~~eAe~~~~~ii~~A~~ea~ 117 (167)
T PRK08475 98 KKEAYILTQKIEKQTKDDIE 117 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333
No 94
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.55 E-value=2.2e+02 Score=33.38 Aligned_cols=51 Identities=27% Similarity=0.167 Sum_probs=36.4
Q ss_pred hhhhhhhcccchhhhhhHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 008047 464 AADAQTSAWDITESTKTISKIKREELRITAWEN-----LQKAKAEAAIRKLEMKLEKR 516 (579)
Q Consensus 464 ~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN-----~QKAKAEAemrKlE~KLEKK 516 (579)
.+-.+.-.|+. ..|+.++++.+|-.|++--. .+-.+||++|+|-|..||..
T Consensus 551 klk~R~i~~~~--Iek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g 606 (691)
T KOG0338|consen 551 KLKNRNIPPEV--IEKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHG 606 (691)
T ss_pred chhhcCCCHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Confidence 34445556765 45788899999998887544 34458899999999888654
No 95
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=30.07 E-value=7.1e+02 Score=27.46 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=8.3
Q ss_pred HHHHHHHHhHHH
Q 008047 482 SKIKREELRITA 493 (579)
Q Consensus 482 ~RyqREEAKI~A 493 (579)
.||++|+.+-+.
T Consensus 153 ~KFkqE~kr~t~ 164 (340)
T KOG3756|consen 153 QKFKQESKRATE 164 (340)
T ss_pred HHHHHHHHHHHH
Confidence 477777777666
No 96
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=29.44 E-value=1.2e+02 Score=32.70 Aligned_cols=43 Identities=37% Similarity=0.441 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 497 LQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 497 ~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+|-.+|||.++-.+.|.|++|+-+.-.=+.-. -+.|||||.+-
T Consensus 229 Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~----A~vqe~rAkvV 271 (316)
T PF12127_consen 229 LQTDQAEADKRIAQAKAEERRAMAVAREQEMK----AKVQEMRAKVV 271 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHhe
Confidence 67778888888888888888877654433222 23455665543
No 97
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.92 E-value=6.4e+02 Score=27.88 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 476 ESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 476 EkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.+..+..-++|+|..+..-=-.+.-.-|++|++.|..|--| .++++..-..-.+|-|++|.+.+
T Consensus 327 Kr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~k----f~~lkr~h~eEk~kle~~rr~Le 390 (406)
T KOG3859|consen 327 KRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEK----FDRLKRLHQEEKKKLEEKRKQLE 390 (406)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566665554433333344577777777665433 23333333333445555555555
No 98
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.90 E-value=2.4e+02 Score=32.17 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=51.4
Q ss_pred ccceeccccccccccCCCCchhhHHHh--hhhhhhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008047 435 KVTVTRWSKKHRTRTSGKSSEIVDDWR--KKAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMK 512 (579)
Q Consensus 435 kvtiarWSkkee~~~s~k~s~~v~e~k--k~~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~K 512 (579)
+.|++.--.+|++.++..-+.++.+.+ |-.+|-..---.|--..|+++|++|.|.+-..=.|.- -+...++=.+|.+
T Consensus 116 ketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~l-eQLRre~V~lent 194 (552)
T KOG2129|consen 116 KETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTL-EQLRREAVQLENT 194 (552)
T ss_pred ccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhH-HHHHHHHHHHhhH
Confidence 455555555666666766666666555 3344544444445566777777777776654322200 1233444455666
Q ss_pred HHHHhhHHHHHHHHHH
Q 008047 513 LEKRRSSSMDKIMNKL 528 (579)
Q Consensus 513 LEKKRA~a~EKm~NKL 528 (579)
||+.-..+.-++.++|
T Consensus 195 lEQEqEalvN~LwKrm 210 (552)
T KOG2129|consen 195 LEQEQEALVNSLWKRM 210 (552)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555554444
No 99
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.49 E-value=5.1e+02 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=7.9
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 008047 511 MKLEKRRSSSMDKIMNKLR 529 (579)
Q Consensus 511 ~KLEKKRA~a~EKm~NKLA 529 (579)
.+++..+..+++.++..+.
T Consensus 111 ~~i~~ek~~a~~~l~~~i~ 129 (164)
T PRK14471 111 ASIESEKNAAMAEIKNQVA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 100
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=28.17 E-value=2.8e+02 Score=29.41 Aligned_cols=6 Identities=33% Similarity=0.252 Sum_probs=2.2
Q ss_pred hHHHHH
Q 008047 490 RITAWE 495 (579)
Q Consensus 490 KI~AWE 495 (579)
++.+|+
T Consensus 28 ~~~~~~ 33 (378)
T TIGR01554 28 ELTAAA 33 (378)
T ss_pred HHHHHH
Confidence 333333
No 101
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.17 E-value=3.5e+02 Score=28.74 Aligned_cols=40 Identities=10% Similarity=0.364 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008047 499 KAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMR 539 (579)
Q Consensus 499 KAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkR 539 (579)
.++.+.+|...+.+|+++...+ ++++++|..-+.+|++.+
T Consensus 17 V~~m~~~L~~~~~~L~~k~~e~-e~ll~~i~~~~~~a~~~~ 56 (344)
T PF12777_consen 17 VEEMQEELEEKQPELEEKQKEA-EELLEEIEKEQEEAEKKK 56 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544322 344444443333444333
No 102
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=28.06 E-value=5.3e+02 Score=25.80 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhhH
Q 008047 529 RSAQKRAQEMRSSVV 543 (579)
Q Consensus 529 A~a~rkAEEkRAaAE 543 (579)
+.+.+.++..++.++
T Consensus 221 A~a~~~~~~~~ae~~ 235 (266)
T cd03404 221 AEAYKEEVIAEAQGE 235 (266)
T ss_pred HHHHHHhHHHHHHHH
Confidence 333344444444444
No 103
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=27.99 E-value=7e+02 Score=25.90 Aligned_cols=16 Identities=19% Similarity=0.109 Sum_probs=7.1
Q ss_pred HHHHHHHHhHHHHHHH
Q 008047 482 SKIKREELRITAWENL 497 (579)
Q Consensus 482 ~RyqREEAKI~AWEN~ 497 (579)
.|++..+.....|+..
T Consensus 211 ~k~e~~e~e~~~l~e~ 226 (297)
T PF02841_consen 211 AKAEAAEKEKEKLEEK 226 (297)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.86 E-value=9.2e+02 Score=27.35 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=18.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 510 EMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+.+||..+++ ...+.+.|+++...|...|..++
T Consensus 223 q~~l~eL~~~-~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 223 QKKLEELRAN-ESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333 34677778887754445555554
No 105
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=27.68 E-value=1.3e+03 Score=28.96 Aligned_cols=7 Identities=57% Similarity=0.938 Sum_probs=4.9
Q ss_pred CCCCCcc
Q 008047 196 PGTPNYR 202 (579)
Q Consensus 196 PGtPnY~ 202 (579)
.|||.|.
T Consensus 202 vGTp~Ym 208 (1021)
T PTZ00266 202 VGTPYYW 208 (1021)
T ss_pred CCCcccc
Confidence 5788773
No 106
>PF11554 DUF3232: Protein of unknown function (DUF3232); InterPro: IPR021618 This bacterial family of proteins has no known function. ; PDB: 2RDC_A.
Probab=27.35 E-value=1.8e+02 Score=28.54 Aligned_cols=59 Identities=14% Similarity=0.255 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008047 478 TKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMR 539 (579)
Q Consensus 478 aK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkR 539 (579)
.++..+.-++|..|+.|-+..- -++.|-+-++|+|-|..+++-+...+.-+.|.|+..-
T Consensus 51 ~~Y~~~V~~mE~~l~t~rfrle---geeYRd~vE~LDr~RtnaH~a~ISd~kIlNR~aek~~ 109 (152)
T PF11554_consen 51 KEYVLIVYRMEDQLQTWRFRLE---GEEYRDLVEELDRTRTNAHNAAISDCKILNRMAEKEN 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCTS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667788899999999987654 3578999999999999999999988888888877543
No 107
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=26.97 E-value=4.5e+02 Score=23.68 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHh
Q 008047 528 LRSAQKRAQEMRSS 541 (579)
Q Consensus 528 LA~a~rkAEEkRAa 541 (579)
|..+++.++..|..
T Consensus 56 le~Ak~eie~Ek~~ 69 (103)
T PRK08404 56 IEKKKKEGEEEAKK 69 (103)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344433333333
No 108
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.91 E-value=6.5e+02 Score=25.18 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 482 SKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSS 519 (579)
Q Consensus 482 ~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~ 519 (579)
..-++.|.+|..= ...+.+.|.+|.++|.||...+..
T Consensus 110 e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 110 EERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444444433 335567888888888888776654
No 109
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.60 E-value=6.1e+02 Score=25.37 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=22.7
Q ss_pred Hhhhhhhhhhhc---ccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008047 460 WRKKAADAQTSA---WDITESTKTISKIKREELRITAWENLQKAKAEAAIR 507 (579)
Q Consensus 460 ~kk~~~eSkA~A---WEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemr 507 (579)
.-|..+..+..+ |+.++++-- | +.+.|+..||..++. |+.+-.
T Consensus 104 a~K~~l~~R~~~~~~~~~a~k~l~--K--ar~~k~~~ae~~~~~-a~~~fe 149 (198)
T cd07630 104 SEKDMLFRRTCKLIEFENASKALE--K--AKPQKKEQAEEAKKK-AETEFE 149 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H--hHHhhHHHHHHHHHH-HHHHHH
Confidence 345566666665 454543333 2 224466678877764 444433
No 110
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.21 E-value=2.7e+02 Score=28.56 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=7.4
Q ss_pred HHHHHHHhhHHHHHHHH
Q 008047 510 EMKLEKRRSSSMDKIMN 526 (579)
Q Consensus 510 E~KLEKKRA~a~EKm~N 526 (579)
..+||+.+-.+.||-.+
T Consensus 113 q~r~ek~~kaaEeKTaK 129 (213)
T KOG4055|consen 113 QIRLEKNQKAAEEKTAK 129 (213)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 111
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.52 E-value=5.4e+02 Score=23.75 Aligned_cols=11 Identities=18% Similarity=0.006 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 008047 523 KIMNKLRSAQK 533 (579)
Q Consensus 523 Km~NKLA~a~r 533 (579)
.....+..++.
T Consensus 97 ea~~~~~~a~~ 107 (156)
T PRK05759 97 EAARIKAQAQA 107 (156)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 112
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.27 E-value=5.4e+02 Score=25.55 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 008047 506 IRKLEMKLEKRRSSSMDKIMNKLRS 530 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~NKLA~ 530 (579)
-|+.+.+.+..+..+.+++...|=-
T Consensus 53 rkR~~ke~~~~~~~a~~~~~~~LLp 77 (178)
T PRK14161 53 RKRLEKARDEAKDYAIATFAKELLN 77 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777666543
No 113
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=25.18 E-value=4e+02 Score=27.56 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred cccchhhhhhHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 008047 471 AWDITESTKTISKIKREELRITAWENLQK----------AKAEAAIRKLE-MKLEKRRSSSMDKIMNKLRSAQKRAQEMR 539 (579)
Q Consensus 471 AWEEAEkaK~~~RyqREEAKI~AWEN~QK----------AKAEAemrKlE-~KLEKKRA~a~EKm~NKLA~a~rkAEEkR 539 (579)
.||.|+++--..|-+. ..|..||+.++ ..|+-+|.+.+ ..+.-+|..+.+-+--.|..|.-..+=.|
T Consensus 134 ~~enA~k~L~KaR~~~--kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~ 211 (218)
T cd07662 134 DYENANKALDKARAKN--KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHH
Q 008047 540 SSVVAA 545 (579)
Q Consensus 540 AaAE~A 545 (579)
..+. +
T Consensus 212 ~~~~-~ 216 (218)
T cd07662 212 SCLA-V 216 (218)
T ss_pred HHHH-h
No 114
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=24.99 E-value=2.9e+02 Score=29.71 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhcccCCC
Q 008047 488 ELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQM 567 (579)
Q Consensus 488 EAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~kiR~TGki 567 (579)
+-|-.+.-|.++...+++....+.|.++++..-+++|..=.+.+.+..++.....+ .+. .+...+....++-|+.
T Consensus 276 kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i~~l~~i~~ei~~~e~~~~~~~~-~r~----~~~~~~~~~~~rlgk~ 350 (387)
T PF07767_consen 276 KKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQIDRLKEIAKEIEKEEEEREKRRE-RRK----RKKEKKKLKPKRLGKH 350 (387)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HhhhhhhccccccCcc
Confidence 33444555555555555555556666666655555554433333333322222222 211 3344455556666654
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.59 E-value=6.4e+02 Score=31.12 Aligned_cols=34 Identities=32% Similarity=0.085 Sum_probs=19.1
Q ss_pred ccccccccchhhhhHHHHHHHHhhhHH-hhhcCCccccCCCCCc
Q 008047 129 NRTLDSARNSFSQSLKECQERRLRAEA-LSRRRPASLDLNNATF 171 (579)
Q Consensus 129 ~~~~~~~~~~~~~~~~ecq~~r~r~~a-~~~~rpasld~~~~~~ 171 (579)
-..+|.|||-|..+- +-. ||.|==|--||+++|-
T Consensus 31 fitg~qArnfflqS~---------LP~~VLaqIWALsDldkDGr 65 (1118)
T KOG1029|consen 31 FITGDQARNFFLQSG---------LPTPVLAQIWALSDLDKDGR 65 (1118)
T ss_pred ccchHhhhhhHHhcC---------CChHHHHHHHHhhhcCcccc
Confidence 345677888876531 111 3333446668888763
No 116
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=24.53 E-value=3e+02 Score=26.61 Aligned_cols=28 Identities=32% Similarity=0.518 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 492 TAWENLQKAKAEAAIRKLEMKLEKRRSS 519 (579)
Q Consensus 492 ~AWEN~QKAKAEAemrKlE~KLEKKRA~ 519 (579)
.+|-+..++++++++.+||.+|+.-+..
T Consensus 2 ~~w~~~~~~~~~~~~~~Le~elk~~~~n 29 (177)
T PF10602_consen 2 EEWIEETKAKNAEELEKLEAELKDAKSN 29 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999875543
No 117
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.43 E-value=7.1e+02 Score=25.61 Aligned_cols=81 Identities=15% Similarity=0.300 Sum_probs=44.9
Q ss_pred hhhhhhhhhcccchhhhhhHH-HHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHH-H
Q 008047 462 KKAADAQTSAWDITESTKTIS-KIKREELRITAWE--NLQKAKAEAAIRKLEMKLEK---RRSSSMDKIMNKLRSAQK-R 534 (579)
Q Consensus 462 k~~~eSkA~AWEEAEkaK~~~-RyqREEAKI~AWE--N~QKAKAEAemrKlE~KLEK---KRA~a~EKm~NKLA~a~r-k 534 (579)
+..+..++.+|.....+.-.- |.+-.++|.. |- ..|-..++.+++.+|.+.+. .=...-+.|+++|.+-++ +
T Consensus 122 K~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~-~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er 200 (234)
T cd07664 122 KGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQ-YANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKER 200 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766544322211 1111233331 11 12444566666666655543 334556777888888755 7
Q ss_pred HHHHHHhhH
Q 008047 535 AQEMRSSVV 543 (579)
Q Consensus 535 AEEkRAaAE 543 (579)
.+++|..++
T Consensus 201 ~~dfk~~l~ 209 (234)
T cd07664 201 VKDFKTVII 209 (234)
T ss_pred HHHHHHHHH
Confidence 888888777
No 118
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=24.37 E-value=1.6e+02 Score=29.90 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=34.1
Q ss_pred hhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008047 468 QTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSS 520 (579)
Q Consensus 468 kA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a 520 (579)
.+..|.+.....|..|=+.++.+.+.|-..-+.-.+-..++.+.++|+.+...
T Consensus 113 ~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~n 165 (225)
T PF01086_consen 113 AIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQN 165 (225)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777765555555555555666666655443
No 119
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=24.28 E-value=3.2e+02 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008047 501 KAEAAIRKLEMKLEKRRSSSMDKIMN 526 (579)
Q Consensus 501 KAEAemrKlE~KLEKKRA~a~EKm~N 526 (579)
+.+...++++..+.++|+++.+.+.-
T Consensus 10 ~~~~~r~~~~~~~~~~r~eA~~~~~l 35 (151)
T PF11875_consen 10 EIEEQREKNKEEIAEKRAEAESAIEL 35 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677777777776665443
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.02 E-value=3.4e+02 Score=32.27 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008047 518 SSSMDKIMNKLRSAQKRAQEMRSSVVA 544 (579)
Q Consensus 518 A~a~EKm~NKLA~a~rkAEEkRAaAE~ 544 (579)
+.+..+|+++|..++.+-+.+++.+++
T Consensus 631 S~AEr~~~~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 631 SEAEREFKKELERMKDQLQDLKASIEQ 657 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666664
No 121
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=23.93 E-value=4.3e+02 Score=26.93 Aligned_cols=62 Identities=13% Similarity=0.281 Sum_probs=42.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhh
Q 008047 485 KREELRITAWENLQKAKAEAAIRKLE-MKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDH 549 (579)
Q Consensus 485 qREEAKI~AWEN~QKAKAEAemrKlE-~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~e 549 (579)
+|+-.-+..|+....--- .|++.+ .+.|.+|...+++|+.++......+...|-..+ +-+.+
T Consensus 41 ~r~~~VmkeW~eaE~~~~--~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~-~~H~q 103 (193)
T PF12925_consen 41 ERMTKVMKEWSEAEERYK--ELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLV-ETHQQ 103 (193)
T ss_dssp HHHHHHHHHHHHHHHTTT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--hchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 444555677876554322 344554 788889999999999999999888777776666 44333
No 122
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=23.70 E-value=2.7e+02 Score=26.81 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 008047 502 AEAAIRKLEMKLEKRRSSSMDKIMN 526 (579)
Q Consensus 502 AEAemrKlE~KLEKKRA~a~EKm~N 526 (579)
|+.-+...+.+.++....+.++...
T Consensus 19 a~~il~~A~~~a~~i~~~a~~~a~~ 43 (198)
T PRK03963 19 IEYILEEAQKEAEKIKEEARKRAES 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 123
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=1.9e+02 Score=33.27 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008047 494 WENLQKAKAEAAIRKLEMKLEKRRSSS 520 (579)
Q Consensus 494 WEN~QKAKAEAemrKlE~KLEKKRA~a 520 (579)
|+..||.+++..++|++..++.||.+|
T Consensus 400 ~~~~k~~~~~~~~ek~~~~~~~Kk~eA 426 (546)
T KOG0718|consen 400 LLKRKKRERLLRREKLKDSVEAKKVEA 426 (546)
T ss_pred HHhhHhHHHHHHHHHhhhHHHHHHHHH
Confidence 566677788888888888888777654
No 124
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.56 E-value=8.2e+02 Score=25.16 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=54.0
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHH
Q 008047 475 TESTKTISKIKREELRITAWENLQKA-----------KAEAAIRKLEMKLEKRRS------SSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 475 AEkaK~~~RyqREEAKI~AWEN~QKA-----------KAEAemrKlE~KLEKKRA------~a~EKm~NKLA~a~rkAEE 537 (579)
+....+..+|.+....+..||+.=+. +|=.++..+|..++-.++ ...++|+..|...+.+-.+
T Consensus 52 a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 52 ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566788888888888875332 223344445544444443 3456777777777777777
Q ss_pred HHHhhHHHhhhhHHHHHHHHHHHhcccCC
Q 008047 538 MRSSVVAANQDHQVARTSHKAVSFRRTRQ 566 (579)
Q Consensus 538 kRAaAE~Arr~ee~~K~~EKA~kiR~TGk 566 (579)
.|+..+...-.....++.++...+...+.
T Consensus 132 ~~~~~~~l~ar~~~akA~~~v~~~~~~~s 160 (225)
T COG1842 132 LRAKKEALKARKAAAKAQEKVNRSLGGGS 160 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66665544445555666666665554443
No 125
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.50 E-value=2.3e+02 Score=26.73 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=38.0
Q ss_pred hcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008047 470 SAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMD 522 (579)
Q Consensus 470 ~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~E 522 (579)
.+||. |++...+|+-..|....+.||+++.- ...|+-||-.|-+.|+++..
T Consensus 21 ~~Wei-ERaEmkarIa~LEGE~r~~e~l~~dL-~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 21 NQWEI-ERAEMKARIAFLEGERRGQENLKKDL-KRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 56753 56777888888888888888887754 56777788877777777654
No 126
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.48 E-value=7.3e+02 Score=24.57 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=2.8
Q ss_pred chhhhcc
Q 008047 413 PIAEIQS 419 (579)
Q Consensus 413 ~i~el~~ 419 (579)
++..|+.
T Consensus 34 dVi~L~e 40 (189)
T PF10211_consen 34 DVIQLQE 40 (189)
T ss_pred HHHHHHH
Confidence 4444433
No 127
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.38 E-value=5.6e+02 Score=25.88 Aligned_cols=9 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HhcccCCCC
Q 008047 560 SFRRTRQMG 568 (579)
Q Consensus 560 kiR~TGkiP 568 (579)
-+|..|.-|
T Consensus 160 ~lr~~~yNP 168 (190)
T PF06936_consen 160 PLRGSDYNP 168 (190)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 345555544
No 128
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.35 E-value=6.3e+02 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 511 MKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 511 ~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
...+..++.+.+.....++.++...+..|..+.
T Consensus 103 ~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~ 135 (156)
T CHL00118 103 EIVENELKQAQKYIDSLLNEATKQLEAQKEKAL 135 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 129
>PTZ00491 major vault protein; Provisional
Probab=23.23 E-value=5.4e+02 Score=31.55 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH----HHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 483 KIKREELRITAWENLQKAKAEAAI----RKLE----MKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 483 RyqREEAKI~AWEN~QKAKAEAem----rKlE----~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
+.=..+++..|=|..-.|||||+- .++| ++.-++|+++++-+.+-.-...+++.+
T Consensus 700 ~llel~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~~~~~~~~ 762 (850)
T PTZ00491 700 KLLELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQE 762 (850)
T ss_pred HHHHHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHHHHHHHHH
Confidence 444456666777777666665543 3444 444467777776665554444444433
No 130
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.06 E-value=5.8e+02 Score=24.44 Aligned_cols=21 Identities=43% Similarity=0.384 Sum_probs=9.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 008047 485 KREELRITAWENLQKAKAEAA 505 (579)
Q Consensus 485 qREEAKI~AWEN~QKAKAEAe 505 (579)
+.++++-++=+=...|+.+++
T Consensus 66 ~l~~Ar~~a~~Ii~~A~~~a~ 86 (161)
T COG0711 66 ELEEAREQASEIIEQAKKEAE 86 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 131
>PRK11637 AmiB activator; Provisional
Probab=22.94 E-value=9.2e+02 Score=26.27 Aligned_cols=6 Identities=17% Similarity=-0.291 Sum_probs=2.9
Q ss_pred ccCCCC
Q 008047 563 RTRQMG 568 (579)
Q Consensus 563 ~TGkiP 568 (579)
..|+++
T Consensus 303 ~~g~~~ 308 (428)
T PRK11637 303 PRGQAF 308 (428)
T ss_pred CCCCCc
Confidence 345553
No 132
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=22.80 E-value=4.4e+02 Score=26.43 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHH
Q 008047 506 IRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVS 560 (579)
Q Consensus 506 mrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~k 560 (579)
++..+.+++..+..+-+.+.+-.+.+.++++++...+. ..-..++.+..+++..
T Consensus 12 ~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~-~~~~~ea~~~~~~iis 65 (194)
T COG1390 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEIL-RKAEKEAERERQRIIS 65 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 133
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.78 E-value=7e+02 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008047 479 KTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIM 525 (579)
Q Consensus 479 K~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~ 525 (579)
.+...+......|+.=+..+-+...++..++..++|+.+.+..+.|.
T Consensus 55 ~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 55 LFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666667777777777777777777777777666553
No 134
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.62 E-value=7.7e+02 Score=24.51 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008047 524 IMNKLR 529 (579)
Q Consensus 524 m~NKLA 529 (579)
+.+.+.
T Consensus 124 ~~~~~~ 129 (302)
T PF10186_consen 124 LQNELE 129 (302)
T ss_pred HHHHHH
Confidence 333333
No 135
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.31 E-value=9.8e+02 Score=28.00 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008047 480 TISKIKREELRITAWENLQ--KAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRS 530 (579)
Q Consensus 480 ~~~RyqREEAKI~AWEN~Q--KAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~ 530 (579)
...|....|..|....... .-+...+++++..++|+..+...++++..+..
T Consensus 218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~ 270 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQ 270 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443322 12334445555566666665555555544333
No 136
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.19 E-value=8.6e+02 Score=27.40 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=39.4
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 476 ESTKTISKIKREELRITAWENLQ-KAKAEAAIRKLEMKLEK---RRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 476 EkaK~~~RyqREEAKI~AWEN~Q-KAKAEAemrKlE~KLEK---KRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.-+|+..++..++.+|.-=|-.| .|--|++|.+.+.+|+- +=+++.-....||+.+.+.--.|.+.||
T Consensus 241 qaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAE 312 (428)
T KOG2668|consen 241 QAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAE 312 (428)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777776544 34456677777766652 2244444455555555554444444444
No 137
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.18 E-value=6.2e+02 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 008047 525 MNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 525 ~NKLA~a~rkAEEkRAaAE 543 (579)
..+...+++.++......+
T Consensus 86 ~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 86 QQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 138
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.99 E-value=8.9e+02 Score=25.03 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=52.7
Q ss_pred hhhhhhhhhhcccchhhhhhHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH-H
Q 008047 461 RKKAADAQTSAWDITESTKTISKIKR-EELRITA-WENLQKAKAEAAIRKLEMKLEKRRS---SSMDKIMNKLRSAQK-R 534 (579)
Q Consensus 461 kk~~~eSkA~AWEEAEkaK~~~RyqR-EEAKI~A-WEN~QKAKAEAemrKlE~KLEKKRA---~a~EKm~NKLA~a~r-k 534 (579)
-+..+..++.+|.-...+.-.-.-+| .++|... =-..|-..|+.+++.+|.+++.-+. ..-+.|+.+|.+-++ +
T Consensus 121 VK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er 200 (234)
T cd07665 121 VRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEK 200 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888776544433222222 2333311 0123556788888888877766554 456788888888887 7
Q ss_pred HHHHHHhhH
Q 008047 535 AQEMRSSVV 543 (579)
Q Consensus 535 AEEkRAaAE 543 (579)
++++|..++
T Consensus 201 ~~Dfk~~v~ 209 (234)
T cd07665 201 SKDFKNHII 209 (234)
T ss_pred HHHHHHHHH
Confidence 889998877
No 139
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.99 E-value=3.4e+02 Score=26.27 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008047 498 QKAKAEAAIRKLEMKLEK 515 (579)
Q Consensus 498 QKAKAEAemrKlE~KLEK 515 (579)
+.++.+.++++++.+|++
T Consensus 155 ~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 333334444444444443
No 140
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=21.95 E-value=5.9e+02 Score=22.95 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 501 KAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 501 KAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+|+.-+.+....+|..|..+++.+++.++.+-..|+++...+-
T Consensus 51 eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~av 93 (103)
T PRK08404 51 EAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETAV 93 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466667888999999999999999999999888876554
No 141
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.90 E-value=6.4e+02 Score=23.47 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 008047 497 LQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRS 540 (579)
Q Consensus 497 ~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRA 540 (579)
.+.++.+.+|++.+.+|+.-|....+++......+...++.=|.
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~ 68 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQK 68 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999887776666666665443
No 142
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.68 E-value=9.4e+02 Score=25.19 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHH--HhhhhHHHHHHHHHHHhcccCC
Q 008047 524 IMNKLRSAQKRAQEMRSSVVA--ANQDHQVARTSHKAVSFRRTRQ 566 (579)
Q Consensus 524 m~NKLA~a~rkAEEkRAaAE~--Arr~ee~~K~~EKA~kiR~TGk 566 (579)
+++++..+....+..+..... ..-.+...++.+....++..|+
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444454444444444433330 1112223444566666666553
No 143
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.52 E-value=6.1e+02 Score=27.56 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.6
Q ss_pred HHhHHHHHHHHHH
Q 008047 488 ELRITAWENLQKA 500 (579)
Q Consensus 488 EAKI~AWEN~QKA 500 (579)
|++|..||..-++
T Consensus 119 e~~l~~y~~~n~~ 131 (309)
T TIGR00570 119 KKKIETYQKENKD 131 (309)
T ss_pred HHHHHHHHHHhHH
Confidence 4444444444333
No 144
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.46 E-value=1.7e+02 Score=27.49 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008047 502 AEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQK 533 (579)
Q Consensus 502 AEAemrKlE~KLEKKRA~a~EKm~NKLA~a~r 533 (579)
.++++.++|..++..-+.+.+++..+++..+.
T Consensus 15 l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~ 46 (149)
T PF07352_consen 15 LQREIARIEAEANDEIARIKEWYEAEIAPLQN 46 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443333333
No 145
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=20.87 E-value=7e+02 Score=23.37 Aligned_cols=17 Identities=0% Similarity=0.212 Sum_probs=6.8
Q ss_pred HHHHhhHHHHHHHHHHH
Q 008047 513 LEKRRSSSMDKIMNKLR 529 (579)
Q Consensus 513 LEKKRA~a~EKm~NKLA 529 (579)
+++.|..++..+++.+.
T Consensus 107 I~~ek~~a~~el~~~~~ 123 (159)
T PRK09173 107 IAQAETDAINAVRSSAV 123 (159)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 146
>PF05604 DUF776: Protein of unknown function (DUF776); InterPro: IPR008494 This family consists of several highly related Mus musculus and Homo sapiens proteins of unknown function.
Probab=20.60 E-value=86 Score=31.43 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCC
Q 008047 269 PQRRPKSKSGPLGPPGLAYYSLYSPA 294 (579)
Q Consensus 269 ~~RRPKSKSGPLgpPg~~~ys~~Spa 294 (579)
.|||-.|||-=|=||-+.|++.-.|+
T Consensus 75 tQRRRRSKSPVLhPPKFt~Cst~a~s 100 (178)
T PF05604_consen 75 TQRRRRSKSPVLHPPKFTHCSTKAPS 100 (178)
T ss_pred cccccccCCcccCCCcceeeccCCCC
Confidence 48999999998899988888876665
No 147
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.43 E-value=9.3e+02 Score=24.91 Aligned_cols=51 Identities=14% Similarity=0.313 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHHHHHHHHHH
Q 008047 488 ELRITAWENLQKAKAEAAIRKLEMKLEKRR-S---SSMDKIMNKLRSAQKRAQEMRS 540 (579)
Q Consensus 488 EAKI~AWEN~QKAKAEAemrKlE~KLEKKR-A---~a~EKm~NKLA~a~rkAEEkRA 540 (579)
...+.+|-+.+.+ +..|.|.+.+++|.. . .-+.-+..+|+.+++++++.+.
T Consensus 126 ~~R~k~~~~~~~~--~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~ 180 (234)
T cd07665 126 DQRMKTWQRWQDA--QAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYER 180 (234)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778777776 445566666666653 2 1222334556666666555544
No 148
>PRK13665 hypothetical protein; Provisional
Probab=20.33 E-value=2.7e+02 Score=30.12 Aligned_cols=43 Identities=37% Similarity=0.404 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 497 LQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 497 ~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+|-.+|||.++-.+.|.|++|+.+.-+=+.-. -+.|||||.+-
T Consensus 234 Lq~dQAEADk~iAqAkAEeRRAmAvA~EQEmk----A~v~emrAkvV 276 (316)
T PRK13665 234 LQTDQAEADKRIAQAKAEERRAMAVALEQEMK----AKVQEMRAKVV 276 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Confidence 56778888888888888888877664332221 23456666544
No 149
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.05 E-value=4.7e+02 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008047 495 ENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQK 533 (579)
Q Consensus 495 EN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~r 533 (579)
|..++.+||....+++.+||..=+.+++--.+-++.+++
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~ 44 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMVADARR 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999887766666554
No 150
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=20.02 E-value=4.1e+02 Score=27.39 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHhhHHHhhhhHHHHHHHHHHHhcccC
Q 008047 504 AAIRKLEMKLEKRRSSSMDKIMNKLRSAQK-RAQEMRSSVVAANQDHQVARTSHKAVSFRRTR 565 (579)
Q Consensus 504 AemrKlE~KLEKKRA~a~EKm~NKLA~a~r-kAEEkRAaAE~Arr~ee~~K~~EKA~kiR~TG 565 (579)
+.+.+|-.++.....+...+..+++...+. +.++ ..+++.+..+|+++.+++|
T Consensus 3 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---------~~~~~~e~~~kaeeaqK~G 56 (306)
T PF04888_consen 3 ALLAELISKSSEESLKSKKEQIERASEAQEKKAEE---------KAEEIEEAQEKAEEAQKAG 56 (306)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcC
Confidence 456666666666666666666666665555 1111 2223344556666666654
Done!