Query 008047
Match_columns 579
No_of_seqs 149 out of 230
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 83.2 14 0.00049 38.7 13.5 70 498-569 517-586 (597)
2 3mq7_A Bone marrow stromal ant 68.3 39 0.0013 30.7 10.0 62 491-552 35-104 (121)
3 3oja_A Leucine-rich immune mol 56.2 1.1E+02 0.0038 31.4 12.4 61 478-543 413-473 (487)
4 3na7_A HP0958; flagellar bioge 55.8 1.4E+02 0.0049 28.8 12.5 14 564-577 191-205 (256)
5 2zuo_A MVP, major vault protei 55.4 99 0.0034 35.9 12.7 46 465-510 709-754 (861)
6 2eqb_B RAB guanine nucleotide 54.1 1.1E+02 0.0039 26.7 11.4 39 495-533 38-76 (97)
7 1cii_A Colicin IA; bacteriocin 47.6 1.4E+02 0.0047 32.9 11.6 76 462-543 341-423 (602)
8 3ni0_A Bone marrow stromal ant 46.2 1E+02 0.0034 27.2 8.6 52 491-542 28-90 (99)
9 3viq_A SWI5-dependent recombin 42.9 93 0.0032 27.9 8.2 63 497-560 7-69 (122)
10 3ljm_A Coil Ser L9C; de novo d 41.0 30 0.001 24.4 3.6 23 493-515 2-26 (31)
11 3oja_A Leucine-rich immune mol 40.0 89 0.0031 32.1 8.7 25 498-522 450-474 (487)
12 3vkg_A Dynein heavy chain, cyt 36.4 1.9E+02 0.0065 38.2 12.4 63 479-543 1917-1979(3245)
13 3mq9_A Bone marrow stromal ant 35.4 2.2E+02 0.0076 29.0 10.8 33 511-543 432-467 (471)
14 1f5n_A Interferon-induced guan 33.8 2.6E+02 0.0091 30.6 11.6 6 194-199 66-71 (592)
15 2ocy_A RAB guanine nucleotide 27.6 3.8E+02 0.013 25.0 11.2 40 494-533 69-108 (154)
16 2qag_B Septin-6, protein NEDD5 26.3 14 0.00048 39.1 0.0 43 474-516 325-367 (427)
17 2dfs_A Myosin-5A; myosin-V, in 24.8 4.2E+02 0.015 31.1 11.8 17 501-517 981-997 (1080)
18 2b5u_A Colicin E3; high resolu 24.2 6.6E+02 0.023 27.8 12.2 51 492-543 308-359 (551)
19 3lvh_D LCB, clathrin light cha 23.4 1.2E+02 0.004 29.8 5.7 49 469-517 102-150 (205)
20 2y7c_A Type-1 restriction enzy 23.1 2.4E+02 0.0083 27.7 8.2 44 475-526 376-419 (464)
21 3f1i_H Hepatocyte growth facto 22.9 2.2E+02 0.0076 25.0 6.8 48 505-558 49-96 (98)
22 3rk3_E Complexin-1; snare prot 21.5 3.1E+02 0.011 22.4 6.9 26 500-525 26-51 (63)
23 3vkg_A Dynein heavy chain, cyt 21.4 7.1E+02 0.024 33.2 13.6 7 389-395 1784-1790(3245)
24 3bas_A Myosin heavy chain, str 20.8 3.7E+02 0.013 22.4 8.3 20 534-554 60-79 (89)
25 2zuo_A MVP, major vault protei 20.7 8.4E+02 0.029 28.5 12.7 43 483-525 705-755 (861)
26 4efa_E V-type proton ATPase su 20.7 4.3E+02 0.015 24.9 9.1 58 477-537 36-93 (233)
27 2qag_C Septin-7; cell cycle, c 20.0 22 0.00075 37.1 0.0 18 478-495 340-357 (418)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.16 E-value=14 Score=38.69 Aligned_cols=70 Identities=6% Similarity=0.053 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhcccCCCCC
Q 008047 498 QKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVSFRRTRQMGS 569 (579)
Q Consensus 498 QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~kiR~TGkiPs 569 (579)
+.++.+.+.++.+..++.++ +..+++.+++..++++-++++...++.++..+.. .++....+.++.+-|+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~-~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQ-KETEDLEQENIALEKQLDNKRAKQAELRQETSLK-RQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTC----
T ss_pred hhhhhHHHHHHHHHhhhhhh-cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHhcCCCc
Confidence 33344444444444443333 2346666777788888888777776343333322 2344455556655554
No 2
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.30 E-value=39 Score=30.71 Aligned_cols=62 Identities=18% Similarity=0.318 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Q 008047 491 ITAWENLQKAKAEAA-----IRKLEMKLEKRRSS---SMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVA 552 (579)
Q Consensus 491 I~AWEN~QKAKAEAe-----mrKlE~KLEKKRA~---a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~ 552 (579)
-++||.+..+.|+|. +..|-.-|+++++. -++++..+|....++-+++-+.+|+-++..+.+
T Consensus 35 TqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 35 TEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 468999999988876 45556667777766 367788899999998888888888444444433
No 3
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.22 E-value=1.1e+02 Score=31.45 Aligned_cols=61 Identities=5% Similarity=-0.018 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 478 TKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 478 aK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.+...+|+.+.++++. .+.+++..++++..++++.|. -.++++..|..+..+-+++++...
T Consensus 413 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQS----VQNNAIRDWDMYQHKETQLAE-ENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HhhcchhhhhhhhhHHHHHHH-HhhhhhhhhhhhhhhhHhcccHHH
Confidence 3444445444444333 333355555555555554444 344555556666666666666555
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.77 E-value=1.4e+02 Score=28.77 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.8
Q ss_pred cCCCCC-cccccccC
Q 008047 564 TRQMGS-LSGCFTCH 577 (579)
Q Consensus 564 TGkiPs-~~gCF~ch 577 (579)
+|-+|- ---|-+||
T Consensus 191 ~avv~v~~~~C~GC~ 205 (256)
T 3na7_A 191 TSIVTIKKQACGGCF 205 (256)
T ss_dssp GSEEECBTTBCTTTC
T ss_pred ceEEEeeCCccCCCC
Confidence 344452 33466666
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=55.37 E-value=99 Score=35.86 Aligned_cols=46 Identities=24% Similarity=0.222 Sum_probs=25.8
Q ss_pred hhhhhhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008047 465 ADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLE 510 (579)
Q Consensus 465 ~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE 510 (579)
+++...|=|..-.+|..++.+-|.+.|.+=-+.+.||.+|+-.+||
T Consensus 709 l~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~ 754 (861)
T 2zuo_A 709 LEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhh
Confidence 3444455555555555555556666665555555555555555554
No 6
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.07 E-value=1.1e+02 Score=26.72 Aligned_cols=39 Identities=33% Similarity=0.366 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008047 495 ENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQK 533 (579)
Q Consensus 495 EN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~r 533 (579)
|..++..||.+..+|+.+||-.=+.+++.-.+-++.+++
T Consensus 38 E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~ 76 (97)
T 2eqb_B 38 ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARK 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999987776666643
No 7
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=47.62 E-value=1.4e+02 Score=32.90 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=43.4
Q ss_pred hhhhhhhhhcccchhhhhhHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Q 008047 462 KKAADAQTSAWDITESTKTISKIKREELRITAWENL------QKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKR- 534 (579)
Q Consensus 462 k~~~eSkA~AWEEAEkaK~~~RyqREEAKI~AWEN~------QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rk- 534 (579)
|+-.-+-++.|+ ++..||.+..++|..=|+- +.-....+.+..|..|+.+. +..+.+.|.++.+.++
T Consensus 341 Kki~naevae~~-----~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~-kek~~~~n~~a~~~~Ki 414 (602)
T 1cii_A 341 KKIYNAEVAEWD-----KLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALL-KEKENIRNQLSGINQKI 414 (602)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHH
Confidence 444455555665 3445566555555555432 33344556667777777655 3445578888888775
Q ss_pred HHHHHHhhH
Q 008047 535 AQEMRSSVV 543 (579)
Q Consensus 535 AEEkRAaAE 543 (579)
||++|...|
T Consensus 415 AE~KrK~dE 423 (602)
T 1cii_A 415 AEEKRKQDE 423 (602)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhH
Confidence 444544444
No 8
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=46.25 E-value=1e+02 Score=27.18 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHhh
Q 008047 491 ITAWENLQKAKAEAA-----IRKLEMKLEKRRSSS------MDKIMNKLRSAQKRAQEMRSSV 542 (579)
Q Consensus 491 I~AWEN~QKAKAEAe-----mrKlE~KLEKKRA~a------~EKm~NKLA~a~rkAEEkRAaA 542 (579)
-+||+.+..+.|+|. +..|-.-|+++++.. ++++..+|....++-++++..-
T Consensus 28 T~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 28 TRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999998886 445566777777765 5667777777777776666443
No 9
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=42.88 E-value=93 Score=27.92 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHH
Q 008047 497 LQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKAVS 560 (579)
Q Consensus 497 ~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA~k 560 (579)
.++++.+++|+.++.+|+..+....=+-.|+.+.++..-+.||.+.. .--.+=...+.+++..
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq-~aaeeLf~~~~~rv~r 69 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQ-QAAEVLFKPMAERIRL 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 35678888999999999998888877788888888888888887766 2222222334444443
No 10
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=41.00 E-value=30 Score=24.39 Aligned_cols=23 Identities=48% Similarity=0.754 Sum_probs=13.7
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHH
Q 008047 493 AWENLQK--AKAEAAIRKLEMKLEK 515 (579)
Q Consensus 493 AWEN~QK--AKAEAemrKlE~KLEK 515 (579)
.||.+.| |..|.+++-+|.|||-
T Consensus 2 ewealekkcaalesklqalekklea 26 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666655 3456666666666653
No 11
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.02 E-value=89 Score=32.11 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Q 008047 498 QKAKAEAAIRKLEMKLEKRRSSSMD 522 (579)
Q Consensus 498 QKAKAEAemrKlE~KLEKKRA~a~E 522 (579)
++++.+-.|+++..+++++++.+.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHHHH
Confidence 4444444444444444444444443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.40 E-value=1.9e+02 Score=38.18 Aligned_cols=63 Identities=6% Similarity=0.098 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 479 KTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 479 K~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
.-.+||+.=..||..= +.|.++.+.++..++.+|++|..+ .++++.+|..-+..|+++++.++
T Consensus 1917 ~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~e-a~~~l~~i~~~~~~ae~~k~~v~ 1979 (3245)
T 3vkg_A 1917 EEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQ-ANQKLKQMVQDQQAAEIKQKDAR 1979 (3245)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555432 345666667777777778776554 45567777777778888776665
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.42 E-value=2.2e+02 Score=29.02 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHhhH
Q 008047 511 MKLEKRRSSSMDKI---MNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 511 ~KLEKKRA~a~EKm---~NKLA~a~rkAEEkRAaAE 543 (579)
.-||+|.+..+.|+ -++|....++-++.+|.++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555543332 2344444444444454444
No 14
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.81 E-value=2.6e+02 Score=30.65 Aligned_cols=6 Identities=17% Similarity=-0.119 Sum_probs=2.5
Q ss_pred CCCCCC
Q 008047 194 PSPGTP 199 (579)
Q Consensus 194 pSPGtP 199 (579)
+-|||+
T Consensus 66 ~~~~tt 71 (592)
T 1f5n_A 66 SLGSTV 71 (592)
T ss_dssp CCCCSS
T ss_pred ccCCCC
Confidence 444443
No 15
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.57 E-value=3.8e+02 Score=25.01 Aligned_cols=40 Identities=33% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 008047 494 WENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQK 533 (579)
Q Consensus 494 WEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~r 533 (579)
=|..++..||.+..++|.+||-.=+.+++.-.+=++.+++
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~ 108 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARK 108 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999987776666544
No 16
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=26.27 E-value=14 Score=39.06 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008047 474 ITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKR 516 (579)
Q Consensus 474 EAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKK 516 (579)
+.++..+..+++++|+.+..==..|.+.-|.++++.|.+|..+
T Consensus 325 ~~~~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~ 367 (427)
T 2qag_B 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEK 367 (427)
T ss_dssp -------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666655555444444445555555555555443
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.83 E-value=4.2e+02 Score=31.13 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008047 501 KAEAAIRKLEMKLEKRR 517 (579)
Q Consensus 501 KAEAemrKlE~KLEKKR 517 (579)
+++++++.+|.++++.+
T Consensus 981 ~~~~~v~~L~~e~~~l~ 997 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLR 997 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555554444433
No 18
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=24.17 E-value=6.6e+02 Score=27.81 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008047 492 TAW-ENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVV 543 (579)
Q Consensus 492 ~AW-EN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE 543 (579)
+.| -++--..||+++.++..+|+.- -+.+++++.+++.+.+.-.+.|+.+.
T Consensus 308 qew~~~hp~~~Aer~~e~a~ael~~a-~k~~a~~~er~~~t~~~~~~~~~~~~ 359 (551)
T 2b5u_A 308 QEWDATHPVEAAERNYERARAELNQA-NEDVARNQERQAKAVQVYNSRKSELD 359 (551)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344 2333444555555444444433 44555555566666666666666655
No 19
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=23.40 E-value=1.2e+02 Score=29.81 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=32.4
Q ss_pred hhcccchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008047 469 TSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRR 517 (579)
Q Consensus 469 A~AWEEAEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKR 517 (579)
|..|-|..+..+..|-..++.+-+.|...-|.-.+-.-+....++||-+
T Consensus 102 IRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~k 150 (205)
T 3lvh_D 102 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 150 (205)
T ss_dssp HHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557666667777777777777777766666556666666666666544
No 20
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=23.13 E-value=2.4e+02 Score=27.70 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008047 475 TESTKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMN 526 (579)
Q Consensus 475 AEkaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~N 526 (579)
.|..++.++.....++|.. .++++++...+|+..|..++.++..
T Consensus 376 ~EQ~~Iv~~l~~~~~~id~--------l~~~~~~~~~~l~~lk~sLL~~af~ 419 (464)
T 2y7c_A 376 KEQAEIVRRVEQLFAYADT--------IEKQVNNALARVNNLTQSILAKAFR 419 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555533 3334445556677788888888753
No 21
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.88 E-value=2.2e+02 Score=25.03 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHH
Q 008047 505 AIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQEMRSSVVAANQDHQVARTSHKA 558 (579)
Q Consensus 505 emrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEEkRAaAE~Arr~ee~~K~~EKA 558 (579)
++-+.-.++|.+|. +.|.++.||+.|+ +.|++.. +-|.++..|..+.|
T Consensus 49 ~Ll~~i~~~ee~R~-~yE~LQDkL~qi~----eAR~ALd-aLR~eH~~Klrr~a 96 (98)
T 3f1i_H 49 QLLELLNQLDERRL-YYEGLQDKLAQIR----DARGALS-ALREEHREKLRRAA 96 (98)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHh
Confidence 34444456666554 4578888888775 6788888 77766666655544
No 22
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=21.54 E-value=3.1e+02 Score=22.35 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008047 500 AKAEAAIRKLEMKLEKRRSSSMDKIM 525 (579)
Q Consensus 500 AKAEAemrKlE~KLEKKRA~a~EKm~ 525 (579)
.+-.++-+|+|.+-|+||..+-+||-
T Consensus 26 e~Rk~Kh~kME~ERE~mRQ~IRdKY~ 51 (63)
T 3rk3_E 26 EERKAKYAKMEAEREAVRQGIRDKYG 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445667888888888888777763
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.38 E-value=7.1e+02 Score=33.16 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=4.2
Q ss_pred cCCCCCC
Q 008047 389 MSPESGS 395 (579)
Q Consensus 389 MTP~~S~ 395 (579)
|+|++..
T Consensus 1784 mSPvg~~ 1790 (3245)
T 3vkg_A 1784 MNPASPD 1790 (3245)
T ss_dssp ECTTSTT
T ss_pred ECCCCHH
Confidence 6666654
No 24
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.81 E-value=3.7e+02 Score=22.38 Aligned_cols=20 Identities=5% Similarity=0.131 Sum_probs=10.3
Q ss_pred HHHHHHHhhHHHhhhhHHHHH
Q 008047 534 RAQEMRSSVVAANQDHQVART 554 (579)
Q Consensus 534 kAEEkRAaAE~Arr~ee~~K~ 554 (579)
-||++++... +++.+-..++
T Consensus 60 eaEe~~~~L~-~~K~eLE~~l 79 (89)
T 3bas_A 60 QLEDKVEELL-SKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHH
Confidence 4566666665 5544433333
No 25
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.74 E-value=8.4e+02 Score=28.50 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH----HHH----HHHHHHhhHHHHHHH
Q 008047 483 KIKREELRITAWENLQKAKAEAAIR----KLE----MKLEKRRSSSMDKIM 525 (579)
Q Consensus 483 RyqREEAKI~AWEN~QKAKAEAemr----KlE----~KLEKKRA~a~EKm~ 525 (579)
..-..++...+=|..-.|||||+-+ +|| .+..+.|+++++...
T Consensus 705 ~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~ 755 (861)
T 2zuo_A 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET 755 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhhh
Confidence 3344455556666666666665443 444 333455555555443
No 26
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=20.70 E-value=4.3e+02 Score=24.91 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008047 477 STKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRSAQKRAQE 537 (579)
Q Consensus 477 kaK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~a~rkAEE 537 (579)
.+|....|+.+..+|. ...+.+++..+.|.+.++|..+....-.+.|+.+..-..|.+
T Consensus 36 ~~kAeeE~~~ek~~~v---~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~ 93 (233)
T 4efa_E 36 QLKADQEYEIEKTNIV---RNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSARE 93 (233)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 27
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.02 E-value=22 Score=37.13 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhHHHHH
Q 008047 478 TKTISKIKREELRITAWE 495 (579)
Q Consensus 478 aK~~~RyqREEAKI~AWE 495 (579)
..+..+.+.+|.+...||
T Consensus 340 ~~f~~~v~~~~~~~~~~e 357 (418)
T 2qag_C 340 QVFEMKVKEKVQKLKDSE 357 (418)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
Done!