Query 008047
Match_columns 579
No_of_seqs 149 out of 230
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 16:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008047.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008047hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d4ca1 a.238.1.1 (A:11-247) E 25.1 1.1E+02 0.008 25.5 8.0 50 479-528 150-199 (237)
2 d2e29a1 d.58.7.5 (A:8-92) ATP- 18.7 11 0.0008 30.2 -0.1 11 243-254 72-82 (85)
3 d2clyb1 f.53.1.1 (B:4-123) ATP 15.1 81 0.0059 26.0 4.6 20 499-518 101-120 (120)
4 d1gpja1 a.151.1.1 (A:303-404) 11.7 1.8E+02 0.013 22.2 5.6 51 478-530 3-53 (102)
5 d1gqea_ e.38.1.1 (A:) Polypept 9.9 5.2E+02 0.038 24.2 9.4 32 470-501 42-74 (362)
6 d1bbha_ a.24.3.2 (A:) Cytochro 8.3 1.2E+02 0.0088 24.4 3.4 6 572-577 120-125 (131)
7 d1eh1a_ d.67.3.1 (A:) Ribosome 8.1 3.3E+02 0.024 23.3 6.5 46 471-517 118-165 (185)
8 d1ek9a_ f.5.1.1 (A:) Integral 7.9 6.2E+02 0.045 21.9 10.4 13 556-568 396-408 (428)
9 d1k78a1 a.4.1.5 (A:19-81) Pax- 7.1 68 0.005 23.9 1.1 9 234-242 8-16 (63)
10 d1h32b_ a.3.1.1 (B:) Mono-heme 6.8 63 0.0046 25.5 0.7 8 572-579 41-48 (138)
No 1
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.10 E-value=1.1e+02 Score=25.50 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008047 479 KTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKL 528 (579)
Q Consensus 479 K~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKL 528 (579)
+...+|+.......++.+.....++.+++..+.++|..+..+...|.+=+
T Consensus 150 ~~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l~ 199 (237)
T d2d4ca1 150 HHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLL 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666788899999999999988888886643
No 2
>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.73 E-value=11 Score=30.24 Aligned_cols=11 Identities=55% Similarity=1.416 Sum_probs=8.5
Q ss_pred Cccccccccccc
Q 008047 243 SKWEDAERWILS 254 (579)
Q Consensus 243 SKWEDAERWI~S 254 (579)
.+|+|+ |||+|
T Consensus 72 ~~W~ds-r~~ls 82 (85)
T d2e29a1 72 AEWHDS-DWILS 82 (85)
T ss_dssp HHCCSS-SCEEE
T ss_pred HHhccc-ceEEe
Confidence 368898 89876
No 3
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.11 E-value=81 Score=26.02 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008047 499 KAKAEAAIRKLEMKLEKRRS 518 (579)
Q Consensus 499 KAKAEAemrKlE~KLEKKRA 518 (579)
++..+++|..+|.+||++++
T Consensus 101 ~~~s~~rI~~lekeLe~iks 120 (120)
T d2clyb1 101 LTQSKTRIQEYEKELEKMRN 120 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45566778889999998863
No 4
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=11.74 E-value=1.8e+02 Score=22.24 Aligned_cols=51 Identities=14% Similarity=0.233 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008047 478 TKTISKIKREELRITAWENLQKAKAEAAIRKLEMKLEKRRSSSMDKIMNKLRS 530 (579)
Q Consensus 478 aK~~~RyqREEAKI~AWEN~QKAKAEAemrKlE~KLEKKRA~a~EKm~NKLA~ 530 (579)
.|+..=.+.+-.+...|- +.-++.--|+.+-.++|..|..-++|..++|..
T Consensus 3 ~~AE~II~ee~~~F~~w~--~~~~~~p~I~~lr~~~e~ir~~Elekal~kl~~ 53 (102)
T d1gpja1 3 PKVEKLIEEELSTVEEEL--EKLKERRLVADVAKSLHEIKDRELERALRRLKT 53 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455667777788884 444567788888888999998888888888763
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=9.93 E-value=5.2e+02 Score=24.20 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=17.8
Q ss_pred hcccchhhhh-hHHHHHHHHHhHHHHHHHHHHH
Q 008047 470 SAWDITESTK-TISKIKREELRITAWENLQKAK 501 (579)
Q Consensus 470 ~AWEEAEkaK-~~~RyqREEAKI~AWEN~QKAK 501 (579)
.-|...++++ +..+|...+..|..|+.+++.-
T Consensus 42 ~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~l 74 (362)
T d1gqea_ 42 DVWNEPERAQALGKERSSLEAVVDTLDQMKQGL 74 (362)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3365544443 5556666666666666665443
No 6
>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]}
Probab=8.29 E-value=1.2e+02 Score=24.41 Aligned_cols=6 Identities=50% Similarity=1.536 Sum_probs=5.2
Q ss_pred cccccC
Q 008047 572 GCFTCH 577 (579)
Q Consensus 572 gCF~ch 577 (579)
.|..||
T Consensus 120 tCksCH 125 (131)
T d1bbha_ 120 ACKSCH 125 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 699998
No 7
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=8.09 E-value=3.3e+02 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=27.5
Q ss_pred cccchhhhhhHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008047 471 AWDITESTKTISKIKREEL--RITAWENLQKAKAEAAIRKLEMKLEKRR 517 (579)
Q Consensus 471 AWEEAEkaK~~~RyqREEA--KI~AWEN~QKAKAEAemrKlE~KLEKKR 517 (579)
+++..|.+|..-|--|.++ +|..+++.+ .--|-..+++|.++++.=
T Consensus 118 ~k~~~E~akv~iR~iR~~~~~~ikk~~k~~-~iseD~~k~~~~eiq~lt 165 (185)
T d1eh1a_ 118 VRQYAEEGRVAIRNIRREALDKLKKLAKEL-HLSEDETKRAEAEIQKIT 165 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHHHHH
Confidence 4567788888877777654 555444222 123566666666666543
No 8
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=6.2e+02 Score=21.85 Aligned_cols=13 Identities=0% Similarity=-0.143 Sum_probs=8.2
Q ss_pred HHHHHhcccCCCC
Q 008047 556 HKAVSFRRTRQMG 568 (579)
Q Consensus 556 EKA~kiR~TGkiP 568 (579)
..+...+.+|.+.
T Consensus 396 a~~~L~~~~G~L~ 408 (428)
T d1ek9a_ 396 NQLNIKSALGTLN 408 (428)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCC
Confidence 4556667777654
No 9
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.14 E-value=68 Score=23.95 Aligned_cols=9 Identities=67% Similarity=1.102 Sum_probs=0.0
Q ss_pred ccCCCCCCC
Q 008047 234 PFNNGRTLP 242 (579)
Q Consensus 234 PFnnGRtlP 242 (579)
+|.|||+||
T Consensus 8 ~~~~GrPls 16 (63)
T d1k78a1 8 VFVNGRPLP 16 (63)
T ss_dssp BCCTTSCCC
T ss_pred cccCCCcCC
No 10
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]}
Probab=6.76 E-value=63 Score=25.53 Aligned_cols=8 Identities=38% Similarity=1.294 Sum_probs=0.0
Q ss_pred cccccCCC
Q 008047 572 GCFTCHAF 579 (579)
Q Consensus 572 gCF~chaf 579 (579)
.|..||.+
T Consensus 41 ~C~aCH~~ 48 (138)
T d1h32b_ 41 NCIACHEV 48 (138)
T ss_dssp CGGGTCCC
T ss_pred CcccCCCC
Done!