BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008048
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase
pdb|3PFN|B Chain B, Crystal Structure Of Human Nad Kinase
pdb|3PFN|C Chain C, Crystal Structure Of Human Nad Kinase
pdb|3PFN|D Chain D, Crystal Structure Of Human Nad Kinase
Length = 365
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 37/335 (11%)
Query: 258 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES------ 311
L W P++V+++ K S+ ++ L E+ + +YVE +V + S
Sbjct: 32 LTWNKSPKSVLVIKKXRDASLLQPFKELCTHLXEENXI-VYVEKKVLEDPAIASDESFGA 90
Query: 312 ---SYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLG 368
+ +F + + D + ++D ++ LGGDGT+L+A+S+F+G VPP+ F LGSLG
Sbjct: 91 VKKKFCTFREDYDD------ISNQIDFIICLGGDGTLLYASSLFQGSVPPVXAFHLGSLG 144
Query: 369 FMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPI----------- 417
F+TPF E+++ + V+ G ++ LR+RL+ V+++ + + + +
Sbjct: 145 FLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLD 204
Query: 418 ----------LVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLA 467
VLNEV IDRG SSYL+N++ Y D +T VQGDG+I+ST +GSTAY+ A
Sbjct: 205 XDVGKQAXQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAA 264
Query: 468 AGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQL 527
AG S +HP VP I TPICPHSLSFRP+++P V L++ + +R+ AW SFDG+ R+++
Sbjct: 265 AGASXIHPNVPAIXITPICPHSLSFRPIVVPAGVELKIXLSPEARNTAWVSFDGRKRQEI 324
Query: 528 APGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGL 562
GD++ + + +P+P+ C D D+F S+ L
Sbjct: 325 RHGDSISITTSCYPLPSICVRDPVSDWFESLAQCL 359
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 166/297 (55%), Gaps = 23/297 (7%)
Query: 252 SSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTE 310
+SK SL W++P Q V I KP + S + + + L E ++N+ V+P V E+
Sbjct: 29 NSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEI--S 86
Query: 311 SSYFSFVQTWKDEKEILL------LHTKVDLVVTLGGDGTVLWAASIFKGP-VPPIVPFS 363
+ S ++ + IL + + DL+VTLGGDGT+L S+F VPP++ F+
Sbjct: 87 QDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFA 146
Query: 364 LGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 423
LG+LGF++PF + +K V+ R RL+CH+ + + + I +N++
Sbjct: 147 LGTLGFLSPFDFKEHKKVFQEVISSRAKCLHRTRLECHLKKKDSNSSIVTH----AMNDI 202
Query: 424 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFT 483
+ RG S +LTNL+ + D F+T DG+ L+T +GSTAYSL+AGGS+V P VP IL T
Sbjct: 203 FLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVSPLVPAILMT 262
Query: 484 PICPHSLSFRPLILPEHVTLRVQI-------PFNSRSPAWASFDGKDRKQLAPGDAL 533
PICP SLSFRPLILP +R++I P NS S DG ++ L GD +
Sbjct: 263 PICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSV--VKLSVDGIPQQDLDVGDEI 317
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
K DL V +GGDG +L AA + ++ + G+LGF+T ++ L VL G
Sbjct: 64 KADLAVVVGGDGNMLGAARVLARYDIKVIGVNRGNLGFLTDLDPDNALQQLSDVLEGEYL 123
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
R L+ HV R ++ I +NEV + G +++ E Y D+ F + D
Sbjct: 124 SEQRFLLETHVRRTNQQSRIST-----AINEVVLHPGKVAHMIEFEVYIDDRFAFSQRSD 178
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQ 506
GLI++T +GSTAYSL+AGG ++ P + I+ P+ PH+L+ RPL++ T+R++
Sbjct: 179 GLIIATPTGSTAYSLSAGGPILTPTLDAIVLVPMFPHTLTARPLVISSSSTIRLK 233
>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
Length = 292
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 5/175 (2%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
+ DL V +GGDG +L AA ++ + G+LGF+T ++ L VL G
Sbjct: 63 QADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRYI 122
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
R L+ V + + I +NEV + G +++ E Y D +F + D
Sbjct: 123 SEKRFLLEAQVCQQDRQKRIST-----AINEVVLHPGKVAHMIEFEVYIDETFAFSQRSD 177
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQ 506
GLI+ST +GSTAYSL+AGG ++ P + I P+ PH+LS RPL++ T+R++
Sbjct: 178 GLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLR 232
>pdb|1YT5|A Chain A, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|B Chain B, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|C Chain C, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|D Chain D, Crystal Structure Of Nad Kinase From Thermotoga Maritima
Length = 258
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISIT 393
DL+V +GGDGTVL AA P+V F G LGF+T + + +L+
Sbjct: 43 DLIVVVGGDGTVLKAAKK-AADGTPMVGFKAGRLGFLTSYTLDEIDRFLED--------- 92
Query: 394 LRNRLQCHVIRDAAKNEIEIEDPI---LVLNEVTIDRGISSYLTNLECYCDNSFVTCVQG 450
LRN R+ + I+IE + L LN+VT++R +S + +E ++
Sbjct: 93 LRN----WNFREETRWFIQIESELGNHLALNDVTLERDLSGKMVEIEVEVEHHSSMWFFA 148
Query: 451 DGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQ 506
DG+++ST +GSTAYSL+ GG ++ P+ + +PI P R +++P + + V+
Sbjct: 149 DGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVVVE 204
>pdb|1Y3H|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
pdb|1Y3H|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
Length = 307
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISIT 393
+LV+ LGGDGT L AA + + P++ +LG +GF+ +E L+ V+ +
Sbjct: 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136
Query: 394 LRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGL 453
R L V+R + I + LNEV++++G + + D V+ DG+
Sbjct: 137 DRLTLDV-VVRQGGR----IVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGV 191
Query: 454 ILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRS 513
++ST +GSTAY+ +AGG ++ P + IL P H+L RP++ T+ ++I +
Sbjct: 192 LVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHD 251
Query: 514 PAWASFDGKDRKQLAP 529
A DG+ R+ L P
Sbjct: 252 -ALVFCDGR-REMLIP 265
>pdb|1U0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1Y3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
pdb|1Y3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
Length = 307
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISIT 393
+LV+ LGGDGT L AA + + P++ +LG +GF+ +E L+ V+ +
Sbjct: 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVE 136
Query: 394 LRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGL 453
R L V+R + I + LNEV++++G + + D V+ DG+
Sbjct: 137 DRLTLDV-VVRQGGR----IVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGV 191
Query: 454 ILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRS 513
++ST +GSTAY+ +AGG ++ P + IL P H+L RP++ T+ ++I +
Sbjct: 192 LVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEATIAIEIEADGHD 251
Query: 514 PAWASFDGKDRKQLAP 529
A DG+ R+ L P
Sbjct: 252 -ALVFCDGR-REMLIP 265
>pdb|1SUW|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
Length = 249
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISIT 393
D +V++GGDGT+L K PPI + G +G +T E+++ L + +
Sbjct: 41 DFIVSVGGDGTILRILQKLKR-CPPIFGINTGRVGLLTHASPENFEVELKKAVE-KFEVE 98
Query: 394 LRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGL 453
R+ C + D +L LNE+ + + + ++ D V ++ DG
Sbjct: 99 RFPRVSCSAMPD-----------VLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDGF 147
Query: 454 ILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 497
I++T GST Y+ +AGG +V P + + PI P ++P ++
Sbjct: 148 IVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVV 191
>pdb|1Z0S|A Chain A, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|B Chain B, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|C Chain C, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|D Chain D, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0U|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0U|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0Z|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
Length = 278
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISIT 393
D +V++GGDGT+L K PPI + G +G +T E+++ L + +
Sbjct: 70 DFIVSVGGDGTILRILQKLKR-CPPIFGINTGRVGLLTHASPENFEVELKKAVE-KFEVE 127
Query: 394 LRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGL 453
R+ C + D +L LNE+ + + + ++ D V ++ DG
Sbjct: 128 RFPRVSCSAMPD-----------VLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDGF 176
Query: 454 ILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 497
I++T GST Y+ +AGG +V P + + PI P ++P ++
Sbjct: 177 IVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVV 220
>pdb|2Q5F|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|3V8Q|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-5'-Deoxyadenosine
pdb|3V8R|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-8-Bromo-5'-Deoxyadenosine
Length = 272
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPI--VPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
++V+++GGDGT L A ++ + I + G LGF + + + +G
Sbjct: 37 EIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQ 96
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
L+ V K E L LNE T+ ++ ++ ++ +GD
Sbjct: 97 KVSYPLLKTTVKYGIGKKEA----TYLALNESTVKSSGGPFV--VDVVINDIHFERFRGD 150
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICP-HSLSFR----PLILPEHVTLRVQ 506
GL +ST SG+TAY+ + GG+++HP + + T + ++ +R PL+ P+H + +Q
Sbjct: 151 GLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQ 210
Query: 507 IPFNSR 512
P N +
Sbjct: 211 -PVNDK 215
>pdb|2I1W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|B Chain B, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|C Chain C, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|D Chain D, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I29|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I2A|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2B|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2C|A Chain A, Crystal Structure Of Lmnadk1
pdb|2I2D|A Chain A, Crystal Structure Of Lmnadk1
pdb|4DY6|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 2'-Phosphate
Bis(Adenosine)-5'-Diphosphate
pdb|3V7U|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With Mta
pdb|3V7W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 5'-Azido-5'-Deoxyadenosine
pdb|3V7Y|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-N-Propargylamino-5'-Deoxyadenosine
pdb|3V80|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-O-Propargylamino-5'-Deoxyadenosine
pdb|3V8M|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complexe With
5'-Azido-8-Bromo-5'-Deoxyadenosine
pdb|3V8N|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
8-Bromo-5'-Amino-5'-Deoxyadenosine, Reacted With A
Citrate Molecule In N Site
pdb|3V8P|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With A New Di-Adenosine
Inhibitor Formed In Situ
Length = 272
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPI--VPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
++V+++GGDGT L A ++ + I + G LGF + + + +G
Sbjct: 37 EIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQ 96
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
L+ V K E L LNE T+ ++ ++ ++ +GD
Sbjct: 97 KVSYPLLKTTVKYGIGKKEA----TYLALNESTVKSSGGPFV--VDVVINDIHFERFRGD 150
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICP-HSLSFR----PLILPEHVTLRVQ 506
GL +ST SG+TAY+ + GG+++HP + + T + ++ +R PL+ P+H + +Q
Sbjct: 151 GLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQ 210
Query: 507 IPFNSR 512
P N +
Sbjct: 211 -PVNDK 215
>pdb|2I2F|A Chain A, Crystal Structure Of Lmnadk1
Length = 272
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPI--VPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
++V+++GG+GT L A ++ + I + G LGF + + + +G
Sbjct: 37 EIVISIGGNGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQ 96
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
L+ V K E L LNE T+ ++ ++ ++ +GD
Sbjct: 97 KVSYPLLKTTVKYGIGKKEA----TYLALNESTVKSSGGPFV--VDVVINDIHFERFRGD 150
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICP-HSLSFR----PLILPEHVTLRVQ 506
GL +ST SG+TAY+ + GG+++HP + + T + ++ +R PL+ P+H + +Q
Sbjct: 151 GLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQ 210
Query: 507 IPFNSR 512
P N +
Sbjct: 211 -PVNDK 215
>pdb|4EHN|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 271 TKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH 330
+K S +Q LCA + ++ + + ++I RV ++ TE FSF T+ +K+I +H
Sbjct: 209 SKDGSWFIQSLCAMLKQYADKLEFMHILT--RVNRKVATEFESFSFDATFHAKKQIPCIH 266
Query: 331 T 331
+
Sbjct: 267 S 267
>pdb|4EHF|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 271 TKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH 330
+K S +Q LCA + ++ + + ++I RV ++ TE FSF T+ +K+I +H
Sbjct: 209 SKDGSWFIQSLCAMLKQYADKLEFMHILT--RVNRKVATEFESFSFDATFHAKKQIPCIH 266
Query: 331 T 331
+
Sbjct: 267 S 267
>pdb|4EHA|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHA|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 271 TKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH 330
+K S +Q LCA + ++ + + ++I RV ++ TE FSF T+ +K+I +H
Sbjct: 209 SKDGSWFIQSLCAMLKQYADKLEFMHILT--RVNRKVATEFESFSFDATFHAKKQIPCIH 266
Query: 331 T 331
+
Sbjct: 267 S 267
>pdb|4EHL|A Chain A, Allosteric Modulation Of Caspase-3 Through Mutagenesis
pdb|4EHL|C Chain C, Allosteric Modulation Of Caspase-3 Through Mutagenesis
Length = 277
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 271 TKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH 330
+K S +Q LCA + ++ + + ++I RV ++ TE FSF T+ +K+I +H
Sbjct: 209 SKDGSWFIQSLCAMLKQYADKLEFMHILT--RVNRKVATEFESFSFDATFHAKKQIPCIH 266
Query: 331 T 331
+
Sbjct: 267 S 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,030,454
Number of Sequences: 62578
Number of extensions: 693698
Number of successful extensions: 1600
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 16
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)