Query 008048
Match_columns 579
No_of_seqs 250 out of 1548
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 18:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02935 Bifunctional NADH kin 100.0 5E-146 1E-150 1174.7 51.6 506 22-578 1-507 (508)
2 KOG2178 Predicted sugar kinase 100.0 5.9E-77 1.3E-81 619.3 28.7 318 254-573 84-409 (409)
3 PLN02727 NAD kinase 100.0 1.6E-75 3.5E-80 656.9 37.4 323 245-573 659-986 (986)
4 PRK02649 ppnK inorganic polyph 100.0 1.5E-73 3.3E-78 587.2 36.0 301 264-575 1-302 (305)
5 PRK04539 ppnK inorganic polyph 100.0 3.3E-73 7.2E-78 582.6 33.9 292 260-568 1-295 (296)
6 PRK01911 ppnK inorganic polyph 100.0 3E-72 6.5E-77 574.6 36.8 290 266-569 2-291 (292)
7 PRK14077 pnk inorganic polypho 100.0 5.2E-72 1.1E-76 571.6 34.3 277 264-565 10-286 (287)
8 PRK03378 ppnK inorganic polyph 100.0 1.6E-71 3.4E-76 569.2 36.1 289 261-567 2-290 (292)
9 PRK03372 ppnK inorganic polyph 100.0 2E-71 4.4E-76 571.7 37.0 294 262-567 3-299 (306)
10 PRK01231 ppnK inorganic polyph 100.0 1.2E-69 2.5E-74 556.0 36.1 288 264-568 4-291 (295)
11 PRK02155 ppnK NAD(+)/NADH kina 100.0 3.8E-69 8.3E-74 551.2 35.4 287 261-566 2-288 (291)
12 PRK02231 ppnK inorganic polyph 100.0 5.8E-69 1.3E-73 545.6 32.1 268 282-566 2-270 (272)
13 PRK01185 ppnK inorganic polyph 100.0 4.7E-67 1E-71 531.4 32.9 265 266-563 2-266 (271)
14 PRK02645 ppnK inorganic polyph 100.0 1.5E-66 3.3E-71 534.9 35.6 294 263-572 2-300 (305)
15 PRK14076 pnk inorganic polypho 100.0 5.6E-66 1.2E-70 568.7 35.0 289 255-565 281-569 (569)
16 PRK03501 ppnK inorganic polyph 100.0 2.1E-65 4.7E-70 517.6 33.7 255 264-562 2-263 (264)
17 PRK03708 ppnK inorganic polyph 100.0 3.5E-65 7.7E-70 518.9 33.7 274 266-565 2-276 (277)
18 COG0061 nadF NAD kinase [Coenz 100.0 6.6E-65 1.4E-69 517.1 35.3 281 265-566 1-281 (281)
19 PRK04885 ppnK inorganic polyph 100.0 4E-63 8.7E-68 501.3 32.3 251 266-563 2-261 (265)
20 PRK14075 pnk inorganic polypho 100.0 2.4E-61 5.1E-66 485.7 32.7 254 266-568 2-255 (256)
21 PRK00561 ppnK inorganic polyph 100.0 1.9E-60 4.1E-65 480.4 31.8 245 266-562 2-255 (259)
22 PF01513 NAD_kinase: ATP-NAD k 100.0 1.5E-60 3.3E-65 484.3 25.0 274 266-546 1-284 (285)
23 PRK04761 ppnK inorganic polyph 100.0 2.6E-54 5.7E-59 433.0 27.2 214 331-560 24-241 (246)
24 PLN02929 NADH kinase 100.0 6.9E-54 1.5E-58 440.2 29.6 234 278-546 32-295 (301)
25 KOG4180 Predicted kinase [Gene 99.8 9.6E-21 2.1E-25 194.7 13.1 210 330-540 103-386 (395)
26 TIGR00147 lipid kinase, YegS/R 99.2 2.5E-09 5.3E-14 108.8 23.5 113 264-391 1-120 (293)
27 PRK13057 putative lipid kinase 98.5 2.3E-05 4.9E-10 80.2 20.7 108 269-391 2-111 (287)
28 PRK00861 putative lipid kinase 98.2 0.00089 1.9E-08 68.9 26.2 111 264-391 2-118 (300)
29 PRK12361 hypothetical protein; 98.1 0.00074 1.6E-08 75.5 24.8 240 264-546 242-540 (547)
30 PRK13059 putative lipid kinase 98.0 0.0028 6E-08 65.5 24.1 112 264-391 1-119 (295)
31 PRK13055 putative lipid kinase 97.9 0.0028 6.1E-08 66.7 23.4 110 264-391 2-123 (334)
32 PRK13337 putative lipid kinase 97.9 0.0016 3.5E-08 67.4 21.1 112 264-390 1-119 (304)
33 PRK11914 diacylglycerol kinase 97.8 0.00044 9.5E-09 71.4 14.3 113 264-391 8-126 (306)
34 COG3199 Predicted inorganic po 97.8 0.00015 3.3E-09 77.0 10.9 69 331-400 99-169 (355)
35 COG1597 LCB5 Sphingosine kinas 97.4 0.084 1.8E-06 55.3 25.3 114 264-391 2-121 (301)
36 PRK13054 lipid kinase; Reviewe 97.3 0.0026 5.6E-08 65.7 12.1 114 263-391 2-121 (300)
37 PF00781 DAGK_cat: Diacylglyce 97.1 0.0027 5.9E-08 57.6 8.8 90 266-368 1-94 (130)
38 TIGR03702 lip_kinase_YegS lipi 96.8 0.0093 2E-07 61.4 10.8 111 266-391 1-117 (293)
39 PLN02958 diacylglycerol kinase 96.6 0.023 4.9E-07 63.3 13.1 116 258-391 105-240 (481)
40 smart00046 DAGKc Diacylglycero 96.2 0.02 4.3E-07 52.1 7.8 36 331-366 48-88 (124)
41 PLN02204 diacylglycerol kinase 95.5 0.16 3.5E-06 58.2 12.8 73 262-350 157-236 (601)
42 PLN02884 6-phosphofructokinase 93.1 0.72 1.6E-05 50.8 11.1 134 250-386 39-210 (411)
43 PRK06830 diphosphate--fructose 92.1 1.2 2.5E-05 49.7 11.1 133 251-385 67-238 (443)
44 PRK14071 6-phosphofructokinase 91.9 0.19 4.2E-06 54.2 4.7 55 331-387 106-170 (360)
45 TIGR02482 PFKA_ATP 6-phosphofr 91.0 0.23 5.1E-06 52.4 4.0 54 331-386 90-153 (301)
46 cd00763 Bacterial_PFK Phosphof 89.4 0.38 8.3E-06 51.1 4.1 54 331-387 91-154 (317)
47 TIGR02483 PFK_mixed phosphofru 89.3 0.39 8.5E-06 51.2 4.1 54 331-387 93-156 (324)
48 PRK14072 6-phosphofructokinase 89.1 0.39 8.4E-06 52.9 4.0 53 331-385 102-169 (416)
49 PTZ00286 6-phospho-1-fructokin 89.1 0.42 9.2E-06 53.3 4.3 135 250-386 73-243 (459)
50 KOG4435 Predicted lipid kinase 88.3 2.1 4.5E-05 47.3 8.6 89 328-425 112-213 (535)
51 PLN02564 6-phosphofructokinase 87.1 0.6 1.3E-05 52.4 4.0 135 250-386 73-243 (484)
52 COG0205 PfkA 6-phosphofructoki 87.1 0.6 1.3E-05 50.4 3.8 120 264-386 2-156 (347)
53 cd01743 GATase1_Anthranilate_S 87.0 1.5 3.2E-05 42.1 6.2 66 282-366 11-81 (184)
54 PRK06555 pyrophosphate--fructo 86.7 0.58 1.2E-05 51.5 3.5 70 331-403 111-195 (403)
55 PRK06895 putative anthranilate 86.2 2.6 5.6E-05 41.0 7.3 75 265-366 2-82 (190)
56 PRK07765 para-aminobenzoate sy 84.9 3.7 8E-05 41.0 7.9 79 266-366 2-86 (214)
57 PRK03202 6-phosphofructokinase 84.6 1.1 2.3E-05 47.8 4.2 53 331-386 92-154 (320)
58 CHL00101 trpG anthranilate syn 83.7 3.3 7.3E-05 40.3 6.9 75 267-366 2-82 (190)
59 cd00363 PFK Phosphofructokinas 83.4 1.1 2.4E-05 48.0 3.7 56 331-388 91-161 (338)
60 PRK06774 para-aminobenzoate sy 83.0 3.4 7.4E-05 40.1 6.6 75 267-366 2-82 (191)
61 cd08179 NADPH_BDH NADPH-depend 82.0 4.9 0.00011 43.2 7.9 76 265-352 24-100 (375)
62 PRK06186 hypothetical protein; 81.6 3.9 8.6E-05 41.9 6.7 37 330-366 51-92 (229)
63 TIGR00566 trpG_papA glutamine 81.5 5.2 0.00011 39.0 7.3 75 267-366 2-82 (188)
64 PF00365 PFK: Phosphofructokin 80.7 0.73 1.6E-05 48.1 1.2 119 265-386 1-154 (282)
65 KOG1116 Sphingosine kinase, in 80.6 5.6 0.00012 45.7 8.0 89 261-366 176-277 (579)
66 cd08181 PPD-like 1,3-propanedi 80.2 7.2 0.00016 41.7 8.4 88 265-364 26-132 (357)
67 cd08186 Fe-ADH8 Iron-containin 80.2 8 0.00017 41.8 8.8 78 264-352 26-103 (383)
68 PRK05670 anthranilate synthase 80.2 6.3 0.00014 38.2 7.3 75 267-366 2-82 (189)
69 cd08194 Fe-ADH6 Iron-containin 79.7 5.5 0.00012 42.8 7.4 88 264-364 23-130 (375)
70 cd08185 Fe-ADH1 Iron-containin 79.4 11 0.00023 40.7 9.4 77 265-352 26-102 (380)
71 cd08176 LPO Lactadehyde:propan 79.3 7.8 0.00017 41.7 8.4 87 265-364 29-135 (377)
72 cd08187 BDH Butanol dehydrogen 78.9 4.9 0.00011 43.3 6.7 89 265-364 29-136 (382)
73 PRK10310 PTS system galactitol 77.4 29 0.00062 30.5 9.9 91 266-388 4-94 (94)
74 TIGR02477 PFKA_PPi diphosphate 77.4 2.1 4.5E-05 48.9 3.5 34 331-364 160-198 (539)
75 PRK07053 glutamine amidotransf 77.0 7 0.00015 39.7 6.8 80 264-366 2-93 (234)
76 PF00465 Fe-ADH: Iron-containi 76.8 5.2 0.00011 42.6 6.1 76 265-352 22-97 (366)
77 PLN02251 pyrophosphate-depende 76.5 2.2 4.8E-05 49.0 3.4 122 263-386 95-259 (568)
78 cd08170 GlyDH Glycerol dehydro 76.3 9.6 0.00021 40.4 7.9 85 265-364 23-109 (351)
79 PRK07085 diphosphate--fructose 76.2 2.4 5.2E-05 48.6 3.6 33 331-363 163-200 (555)
80 cd08173 Gro1PDH Sn-glycerol-1- 76.1 15 0.00032 39.0 9.2 83 265-364 26-110 (339)
81 cd08193 HVD 5-hydroxyvalerate 75.6 11 0.00025 40.3 8.4 88 264-364 26-133 (376)
82 PLN03028 pyrophosphate--fructo 75.6 2.5 5.4E-05 48.9 3.5 33 331-363 172-209 (610)
83 cd08177 MAR Maleylacetate redu 75.5 7.3 0.00016 41.2 6.8 85 264-364 23-109 (337)
84 cd08551 Fe-ADH iron-containing 75.2 5.5 0.00012 42.5 5.8 88 264-364 23-130 (370)
85 PRK09860 putative alcohol dehy 75.1 11 0.00023 40.9 8.1 89 264-364 31-138 (383)
86 PLN02335 anthranilate synthase 75.0 13 0.00028 37.4 8.1 80 262-366 16-101 (222)
87 cd08171 GlyDH-like2 Glycerol d 74.8 13 0.00028 39.5 8.4 96 265-374 23-122 (345)
88 cd00765 Pyrophosphate_PFK Phos 74.7 2.7 5.8E-05 48.1 3.4 54 331-386 165-235 (550)
89 TIGR02478 6PF1K_euk 6-phosphof 73.1 4.3 9.3E-05 48.1 4.7 55 331-387 93-179 (745)
90 PTZ00287 6-phosphofructokinase 72.8 3.6 7.9E-05 51.5 4.2 120 264-387 836-998 (1419)
91 PRK06490 glutamine amidotransf 72.6 6.7 0.00015 39.9 5.5 80 264-366 7-96 (239)
92 cd08175 G1PDH Glycerol-1-phosp 72.4 14 0.0003 39.3 8.0 89 264-364 23-112 (348)
93 cd07766 DHQ_Fe-ADH Dehydroquin 72.3 15 0.00032 38.5 8.0 86 264-364 23-112 (332)
94 PTZ00468 phosphofructokinase f 72.1 3 6.5E-05 51.8 3.2 43 331-373 799-863 (1328)
95 PRK09065 glutamine amidotransf 71.8 6.6 0.00014 39.8 5.2 46 331-389 53-108 (237)
96 cd01745 GATase1_2 Subgroup of 71.7 14 0.0003 36.0 7.2 71 278-366 17-110 (189)
97 PRK08857 para-aminobenzoate sy 71.1 16 0.00034 35.7 7.4 75 267-366 2-82 (193)
98 TIGR02478 6PF1K_euk 6-phosphof 71.0 3.5 7.7E-05 48.8 3.4 123 262-387 387-547 (745)
99 PF13685 Fe-ADH_2: Iron-contai 70.7 12 0.00026 38.7 6.8 95 264-373 19-118 (250)
100 TIGR01815 TrpE-clade3 anthrani 70.5 9.8 0.00021 45.0 6.9 79 263-366 515-598 (717)
101 cd08183 Fe-ADH2 Iron-containin 70.5 19 0.00041 38.7 8.5 71 265-352 23-94 (374)
102 PRK09423 gldA glycerol dehydro 70.4 19 0.00042 38.6 8.5 85 265-364 30-116 (366)
103 PF04392 ABC_sub_bind: ABC tra 70.2 36 0.00079 34.9 10.3 111 263-389 130-252 (294)
104 cd00764 Eukaryotic_PFK Phospho 69.8 3.9 8.5E-05 48.5 3.4 124 261-387 386-547 (762)
105 PRK13566 anthranilate synthase 69.6 14 0.00031 43.6 8.0 79 263-366 525-608 (720)
106 PRK07649 para-aminobenzoate/an 69.1 14 0.00029 36.5 6.6 75 267-366 2-82 (195)
107 PRK07567 glutamine amidotransf 69.0 6.3 0.00014 40.2 4.3 36 331-366 50-103 (242)
108 cd08182 HEPD Hydroxyethylphosp 68.8 14 0.0003 39.6 7.0 72 264-352 23-96 (367)
109 TIGR01357 aroB 3-dehydroquinat 68.0 18 0.00038 38.4 7.6 89 264-364 20-115 (344)
110 cd08192 Fe-ADH7 Iron-containin 67.7 14 0.00031 39.5 6.9 76 264-352 24-100 (370)
111 PRK10586 putative oxidoreducta 67.6 21 0.00045 38.7 8.1 41 331-372 85-128 (362)
112 PRK11366 puuD gamma-glutamyl-g 67.5 17 0.00037 37.3 7.2 85 265-366 8-117 (254)
113 PF08357 SEFIR: SEFIR domain; 67.2 24 0.00053 32.4 7.5 79 265-353 1-79 (150)
114 cd08191 HHD 6-hydroxyhexanoate 66.2 15 0.00032 39.8 6.6 87 265-364 23-129 (386)
115 COG1454 EutG Alcohol dehydroge 66.1 19 0.00042 39.5 7.5 77 264-352 29-105 (377)
116 TIGR00337 PyrG CTP synthase. C 66.1 18 0.0004 41.3 7.6 85 264-366 289-382 (525)
117 PRK05637 anthranilate synthase 65.5 19 0.00041 36.0 6.8 78 264-366 1-83 (208)
118 cd08549 G1PDH_related Glycerol 65.3 18 0.00039 38.4 7.0 86 265-364 25-112 (332)
119 PRK10624 L-1,2-propanediol oxi 65.3 15 0.00033 39.6 6.6 75 265-352 31-106 (382)
120 PRK00843 egsA NAD(P)-dependent 65.2 37 0.0008 36.3 9.4 83 265-364 35-119 (350)
121 cd08199 EEVS 2-epi-5-epi-valio 65.1 26 0.00057 37.8 8.3 92 262-364 24-122 (354)
122 cd08178 AAD_C C-terminal alcoh 64.9 19 0.00041 39.1 7.2 76 264-352 21-97 (398)
123 cd01744 GATase1_CPSase Small c 64.1 14 0.00031 35.5 5.5 36 331-366 38-79 (178)
124 PRK15454 ethanol dehydrogenase 64.1 20 0.00043 39.1 7.2 76 264-352 49-125 (395)
125 cd08169 DHQ-like Dehydroquinat 63.9 23 0.0005 37.9 7.6 91 264-364 23-117 (344)
126 cd08195 DHQS Dehydroquinate sy 63.7 42 0.00092 35.7 9.5 90 264-364 24-119 (345)
127 TIGR02638 lactal_redase lactal 63.6 18 0.00038 39.1 6.6 75 264-351 29-104 (379)
128 PRK08250 glutamine amidotransf 63.6 18 0.00039 36.7 6.4 78 266-366 2-94 (235)
129 PF13528 Glyco_trans_1_3: Glyc 63.2 37 0.00081 34.5 8.6 87 263-364 191-278 (318)
130 PTZ00468 phosphofructokinase f 63.0 6.2 0.00014 49.2 3.4 34 331-364 195-233 (1328)
131 PRK00002 aroB 3-dehydroquinate 62.6 26 0.00056 37.5 7.6 90 264-364 31-126 (358)
132 PF00117 GATase: Glutamine ami 62.4 16 0.00034 34.9 5.4 37 330-366 40-82 (192)
133 cd08189 Fe-ADH5 Iron-containin 62.0 35 0.00075 36.7 8.5 76 264-352 26-102 (374)
134 PRK13527 glutamine amidotransf 61.5 24 0.00053 34.5 6.7 36 331-366 42-87 (200)
135 PRK05380 pyrG CTP synthetase; 61.0 27 0.00058 40.1 7.7 38 329-366 340-382 (533)
136 cd08172 GlyDH-like1 Glycerol d 60.9 26 0.00057 37.2 7.3 83 265-364 24-108 (347)
137 cd01746 GATase1_CTP_Synthase T 60.9 18 0.0004 36.8 5.9 37 330-366 53-94 (235)
138 cd01537 PBP1_Repressors_Sugar_ 60.6 86 0.0019 29.7 10.1 88 266-367 1-90 (264)
139 cd01747 GATase1_Glutamyl_Hydro 60.0 28 0.00061 36.3 7.2 41 326-366 48-102 (273)
140 TIGR03405 Phn_Fe-ADH phosphona 58.8 25 0.00054 37.7 6.7 76 265-352 24-99 (355)
141 cd00764 Eukaryotic_PFK Phospho 58.6 8.5 0.00018 45.8 3.4 55 331-387 96-182 (762)
142 cd08180 PDD 1,3-propanediol de 58.6 25 0.00055 37.1 6.7 87 264-364 22-117 (332)
143 KOG1115 Ceramide kinase [Lipid 58.4 8.7 0.00019 42.7 3.2 18 331-348 216-233 (516)
144 cd03794 GT1_wbuB_like This fam 57.3 69 0.0015 31.6 9.1 120 264-388 220-365 (394)
145 cd08550 GlyDH-like Glycerol_de 56.7 39 0.00084 36.0 7.7 83 265-364 23-109 (349)
146 cd08174 G1PDH-like Glycerol-1- 56.1 39 0.00085 35.6 7.6 32 332-364 75-107 (331)
147 cd08190 HOT Hydroxyacid-oxoaci 54.7 36 0.00078 37.3 7.3 76 264-352 23-99 (414)
148 PRK13525 glutamine amidotransf 54.7 39 0.00086 33.0 6.8 36 331-366 37-82 (189)
149 KOG0782 Predicted diacylglycer 54.7 20 0.00044 41.4 5.3 69 335-403 419-498 (1004)
150 KOG1169 Diacylglycerol kinase 54.7 25 0.00054 41.1 6.2 68 335-402 326-409 (634)
151 TIGR03800 PLP_synth_Pdx2 pyrid 54.6 36 0.00078 33.3 6.5 36 331-366 35-80 (184)
152 COG4069 Uncharacterized protei 54.5 10 0.00022 40.6 2.9 36 328-364 262-297 (367)
153 cd01391 Periplasmic_Binding_Pr 54.5 1.3E+02 0.0028 28.0 10.0 89 266-367 1-93 (269)
154 cd06309 PBP1_YtfQ_like Peripla 54.2 46 0.00099 32.7 7.3 86 266-365 1-89 (273)
155 PRK06203 aroB 3-dehydroquinate 54.1 46 0.001 36.5 7.9 33 331-364 110-145 (389)
156 cd01741 GATase1_1 Subgroup of 53.8 24 0.00051 33.8 5.1 37 330-366 44-91 (188)
157 TIGR00888 guaA_Nterm GMP synth 53.8 22 0.00047 34.3 4.8 34 333-366 42-80 (188)
158 PLN02834 3-dehydroquinate synt 53.7 40 0.00086 37.6 7.4 94 264-365 100-198 (433)
159 COG1819 Glycosyl transferases, 53.0 98 0.0021 34.0 10.2 123 258-389 230-369 (406)
160 COG1570 XseA Exonuclease VII, 52.2 29 0.00063 39.0 6.0 98 263-375 134-240 (440)
161 cd03785 GT1_MurG MurG is an N- 51.6 94 0.002 31.7 9.3 60 325-388 245-324 (350)
162 COG0518 GuaA GMP synthase - Gl 50.5 84 0.0018 31.4 8.5 35 332-366 45-89 (198)
163 cd06267 PBP1_LacI_sugar_bindin 49.7 1.6E+02 0.0035 27.9 10.1 85 267-365 2-87 (264)
164 cd03814 GT1_like_2 This family 49.5 78 0.0017 31.4 8.1 120 264-388 197-332 (364)
165 CHL00188 hisH imidazole glycer 49.4 53 0.0012 32.9 6.9 35 331-366 38-84 (210)
166 PRK13143 hisH imidazole glycer 49.1 64 0.0014 31.7 7.4 36 331-366 37-81 (200)
167 cd08197 DOIS 2-deoxy-scyllo-in 48.2 96 0.0021 33.6 9.1 87 264-364 23-118 (355)
168 PRK13181 hisH imidazole glycer 46.1 37 0.00081 33.1 5.2 36 331-366 36-82 (199)
169 TIGR03590 PseG pseudaminic aci 45.6 67 0.0015 33.1 7.2 35 325-364 234-268 (279)
170 PRK12564 carbamoyl phosphate s 45.4 31 0.00068 37.6 4.9 76 264-366 177-258 (360)
171 COG0512 PabA Anthranilate/para 45.4 1.2E+02 0.0026 30.6 8.6 88 264-390 1-95 (191)
172 KOG2387 CTP synthase (UTP-ammo 45.1 52 0.0011 37.3 6.5 38 329-366 360-402 (585)
173 cd03817 GT1_UGDG_like This fam 43.8 1.3E+02 0.0028 29.7 8.6 61 324-388 270-343 (374)
174 TIGR01368 CPSaseIIsmall carbam 43.5 40 0.00087 36.8 5.4 74 265-366 174-253 (358)
175 TIGR01823 PabB-fungal aminodeo 43.3 51 0.0011 39.3 6.6 36 331-366 52-96 (742)
176 cd08184 Fe-ADH3 Iron-containin 43.3 60 0.0013 35.0 6.6 20 332-352 81-100 (347)
177 COG1370 Prefoldin, molecular c 43.2 65 0.0014 31.5 6.1 112 419-538 28-153 (155)
178 COG0504 PyrG CTP synthase (UTP 42.9 71 0.0015 36.6 7.2 134 333-487 344-506 (533)
179 PRK13805 bifunctional acetalde 42.8 82 0.0018 38.0 8.3 77 264-352 480-558 (862)
180 PRK08007 para-aminobenzoate sy 42.8 75 0.0016 31.0 6.7 75 267-366 2-82 (187)
181 CHL00197 carA carbamoyl-phosph 42.3 71 0.0015 35.2 7.1 76 264-366 192-273 (382)
182 PF06283 ThuA: Trehalose utili 42.2 3.5E+02 0.0075 26.6 16.0 111 266-402 1-122 (217)
183 cd05565 PTS_IIB_lactose PTS_II 41.9 2E+02 0.0044 25.8 8.7 95 266-386 2-98 (99)
184 PRK13146 hisH imidazole glycer 41.4 88 0.0019 31.1 7.1 36 331-366 40-87 (209)
185 PF13380 CoA_binding_2: CoA bi 41.3 86 0.0019 28.4 6.4 87 265-365 1-88 (116)
186 cd03129 GAT1_Peptidase_E_like 41.2 83 0.0018 30.9 6.8 87 263-366 28-124 (210)
187 cd03145 GAT1_cyanophycinase Ty 41.0 1.1E+02 0.0024 30.6 7.7 89 263-366 28-127 (217)
188 cd08198 DHQS-like2 Dehydroquin 40.9 1.1E+02 0.0024 33.5 8.3 97 263-364 29-133 (369)
189 cd05566 PTS_IIB_galactitol PTS 40.9 2.2E+02 0.0047 23.9 8.9 88 265-385 1-88 (89)
190 PLN02327 CTP synthase 40.8 1E+02 0.0022 35.8 8.2 36 329-365 359-400 (557)
191 PRK15395 methyl-galactoside AB 40.6 1.8E+02 0.004 30.2 9.6 90 262-365 22-115 (330)
192 cd01742 GATase1_GMP_Synthase T 39.5 16 0.00034 34.7 1.4 37 330-366 39-80 (181)
193 cd01421 IMPCH Inosine monophos 39.4 56 0.0012 32.8 5.2 48 339-400 122-170 (187)
194 TIGR01426 MGT glycosyltransfer 39.1 34 0.00074 36.2 4.0 57 328-388 287-359 (392)
195 cd03784 GT1_Gtf_like This fami 38.8 48 0.001 34.9 5.0 59 327-389 299-373 (401)
196 cd03823 GT1_ExpE7_like This fa 38.4 1.9E+02 0.004 28.5 8.8 124 262-388 189-329 (359)
197 PF04392 ABC_sub_bind: ABC tra 38.0 1.3E+02 0.0029 30.9 8.0 82 266-362 1-89 (294)
198 cd03820 GT1_amsD_like This fam 37.9 1.9E+02 0.0041 28.0 8.6 61 324-388 244-319 (348)
199 cd03128 GAT_1 Type 1 glutamine 37.9 30 0.00066 26.2 2.6 38 330-367 44-90 (92)
200 PF15372 DUF4600: Domain of un 37.7 14 0.00029 35.1 0.6 26 84-109 2-27 (129)
201 PRK12838 carbamoyl phosphate s 37.5 65 0.0014 35.1 5.8 75 264-366 167-247 (354)
202 cd04949 GT1_gtfA_like This fam 37.4 2E+02 0.0044 29.6 9.2 60 326-388 272-345 (372)
203 PF02601 Exonuc_VII_L: Exonucl 37.3 65 0.0014 33.7 5.7 93 260-361 10-112 (319)
204 PRK15138 aldehyde reductase; P 36.0 86 0.0019 34.2 6.5 74 265-352 30-104 (387)
205 cd08188 Fe-ADH4 Iron-containin 35.9 66 0.0014 34.7 5.6 76 264-352 28-104 (377)
206 cd06301 PBP1_rhizopine_binding 35.7 1.8E+02 0.004 28.3 8.3 86 266-364 1-89 (272)
207 cd06321 PBP1_ABC_sugar_binding 35.5 2.5E+02 0.0055 27.4 9.2 108 267-387 2-116 (271)
208 cd06325 PBP1_ABC_uncharacteriz 35.1 2.2E+02 0.0047 27.8 8.7 86 263-364 130-219 (281)
209 cd01536 PBP1_ABC_sugar_binding 35.0 2.2E+02 0.0048 27.2 8.5 87 266-366 1-90 (267)
210 PRK00881 purH bifunctional pho 34.9 82 0.0018 36.2 6.2 40 263-308 3-42 (513)
211 cd03808 GT1_cap1E_like This fa 34.1 2.2E+02 0.0048 27.6 8.5 60 325-388 256-329 (359)
212 COG2984 ABC-type uncharacteriz 33.3 2.8E+02 0.006 30.3 9.5 144 230-389 118-280 (322)
213 PF02401 LYTB: LytB protein; 32.6 64 0.0014 34.2 4.7 68 263-344 153-221 (281)
214 COG0371 GldA Glycerol dehydrog 32.4 1.6E+02 0.0035 32.4 7.8 41 331-372 83-126 (360)
215 PF04101 Glyco_tran_28_C: Glyc 32.4 29 0.00062 32.3 1.9 34 326-363 66-99 (167)
216 cd06320 PBP1_allose_binding Pe 32.1 2.5E+02 0.0055 27.4 8.6 87 266-365 1-91 (275)
217 cd00861 ProRS_anticodon_short 31.6 1.5E+02 0.0032 24.7 6.0 63 264-342 1-64 (94)
218 cd06305 PBP1_methylthioribose_ 31.1 2.4E+02 0.0052 27.4 8.2 86 266-365 1-89 (273)
219 PF08788 NHR2: NHR2 domain lik 30.8 97 0.0021 26.3 4.4 31 63-93 28-61 (67)
220 PF06057 VirJ: Bacterial virul 30.6 35 0.00075 34.4 2.2 52 335-387 4-59 (192)
221 PRK00758 GMP synthase subunit 30.6 1.2E+02 0.0026 29.1 5.9 32 334-366 43-77 (184)
222 cd06282 PBP1_GntR_like_2 Ligan 30.5 2.5E+02 0.0055 27.0 8.2 85 267-365 2-88 (266)
223 PF00534 Glycos_transf_1: Glyc 30.4 1.8E+02 0.0039 26.4 6.8 125 259-388 10-158 (172)
224 PRK01175 phosphoribosylformylg 30.4 1.3E+02 0.0027 31.5 6.4 84 265-371 4-109 (261)
225 KOG3349 Predicted glycosyltran 30.3 45 0.00097 32.9 2.8 27 325-351 73-99 (170)
226 cd00858 GlyRS_anticodon GlyRS 30.2 2.3E+02 0.005 25.5 7.3 72 255-343 15-88 (121)
227 PTZ00287 6-phosphofructokinase 30.2 43 0.00094 42.5 3.4 34 331-364 270-308 (1419)
228 cd01748 GATase1_IGP_Synthase T 29.7 92 0.002 30.3 5.0 36 331-366 35-81 (198)
229 cd06273 PBP1_GntR_like_1 This 29.3 2.9E+02 0.0062 26.8 8.4 83 267-364 2-86 (268)
230 PRK05234 mgsA methylglyoxal sy 29.2 4.3E+02 0.0093 25.1 9.2 45 262-309 2-47 (142)
231 TIGR00237 xseA exodeoxyribonuc 28.9 1E+02 0.0022 34.2 5.8 88 261-361 126-224 (432)
232 cd03169 GATase1_PfpI_1 Type 1 28.8 46 0.00099 31.7 2.7 36 332-367 76-119 (180)
233 cd03825 GT1_wcfI_like This fam 28.7 4E+02 0.0086 26.7 9.5 62 323-388 255-330 (365)
234 cd03822 GT1_ecORF704_like This 28.5 3.2E+02 0.007 27.1 8.7 62 323-388 258-334 (366)
235 PRK11249 katE hydroperoxidase 28.4 1.8E+02 0.0038 35.1 7.7 98 259-365 592-700 (752)
236 cd06310 PBP1_ABC_sugar_binding 28.3 3.5E+02 0.0076 26.3 8.8 87 266-365 1-91 (273)
237 cd01740 GATase1_FGAR_AT Type 1 28.2 43 0.00093 33.9 2.5 35 331-365 42-91 (238)
238 cd03146 GAT1_Peptidase_E Type 27.8 2.6E+02 0.0056 27.8 7.8 83 262-366 29-124 (212)
239 PRK12360 4-hydroxy-3-methylbut 27.6 1.1E+02 0.0025 32.4 5.5 64 264-342 156-219 (281)
240 TIGR02069 cyanophycinase cyano 27.4 2.1E+02 0.0045 29.6 7.2 88 264-366 28-126 (250)
241 cd06300 PBP1_ABC_sugar_binding 27.3 2.7E+02 0.0059 27.2 7.9 36 330-365 58-94 (272)
242 COG0859 RfaF ADP-heptose:LPS h 27.1 2.4E+02 0.0051 29.9 7.8 78 280-363 195-277 (334)
243 PRK00726 murG undecaprenyldiph 27.0 80 0.0017 32.7 4.3 59 326-388 246-324 (357)
244 TIGR01133 murG undecaprenyldip 26.9 69 0.0015 32.7 3.7 59 326-388 244-321 (348)
245 cd06312 PBP1_ABC_sugar_binding 26.8 2.8E+02 0.0061 27.1 7.9 87 266-365 1-91 (271)
246 PF00201 UDPGT: UDP-glucoronos 26.5 2.5E+02 0.0053 30.9 8.1 101 279-389 292-410 (500)
247 cd03132 GATase1_catalase Type 26.5 46 0.00099 30.3 2.1 35 332-366 62-105 (142)
248 TIGR01382 PfpI intracellular p 26.4 46 0.001 30.9 2.2 35 332-366 60-102 (166)
249 PHA03392 egt ecdysteroid UDP-g 26.3 77 0.0017 35.9 4.3 54 331-388 363-432 (507)
250 COG0745 OmpR Response regulato 26.2 7E+02 0.015 25.3 13.7 100 266-391 2-121 (229)
251 cd03798 GT1_wlbH_like This fam 26.0 4.3E+02 0.0093 25.7 8.9 63 324-390 270-346 (377)
252 TIGR00216 ispH_lytB (E)-4-hydr 25.9 93 0.002 33.0 4.5 64 264-342 153-218 (280)
253 PRK01045 ispH 4-hydroxy-3-meth 25.8 1.3E+02 0.0028 32.2 5.6 66 264-343 155-221 (298)
254 cd06167 LabA_like LabA_like pr 25.7 64 0.0014 29.4 2.9 34 332-365 99-132 (149)
255 PRK13141 hisH imidazole glycer 25.7 1.1E+02 0.0024 29.9 4.8 36 331-366 36-82 (205)
256 PLN02734 glycyl-tRNA synthetas 25.5 1.9E+02 0.004 34.6 7.2 106 256-392 562-667 (684)
257 cd01545 PBP1_SalR Ligand-bindi 24.8 3E+02 0.0066 26.6 7.6 85 267-364 2-88 (270)
258 PF11459 DUF2893: Protein of u 24.7 61 0.0013 27.7 2.4 34 36-69 2-35 (69)
259 cd03807 GT1_WbnK_like This fam 24.7 3E+02 0.0066 26.8 7.7 59 326-388 262-332 (365)
260 cd03799 GT1_amsK_like This is 24.6 6.9E+02 0.015 24.9 10.4 64 324-388 247-327 (355)
261 TIGR02919 accessory Sec system 24.5 3.4E+02 0.0074 30.4 8.8 121 260-387 278-410 (438)
262 cd06314 PBP1_tmGBP Periplasmic 24.4 3.8E+02 0.0082 26.3 8.3 84 266-364 1-87 (271)
263 cd06281 PBP1_LacI_like_5 Ligan 24.4 3.2E+02 0.007 26.7 7.8 108 267-388 2-114 (269)
264 cd01574 PBP1_LacI Ligand-bindi 23.8 6.3E+02 0.014 24.3 9.6 109 267-389 2-115 (264)
265 cd06308 PBP1_sensor_kinase_lik 23.6 3.7E+02 0.0081 26.2 8.1 86 267-365 2-90 (270)
266 cd03801 GT1_YqgM_like This fam 23.2 3.7E+02 0.008 26.0 7.8 61 324-388 267-341 (374)
267 cd01749 GATase1_PB Glutamine A 23.2 2E+02 0.0043 27.8 5.9 36 331-366 34-79 (183)
268 PRK10653 D-ribose transporter 23.0 5.4E+02 0.012 25.8 9.3 88 263-364 25-115 (295)
269 PF08947 BPS: BPS (Between PH 22.9 68 0.0015 25.8 2.1 21 73-93 23-43 (49)
270 cd06319 PBP1_ABC_sugar_binding 22.7 4.8E+02 0.01 25.4 8.6 85 267-365 2-89 (277)
271 PRK00286 xseA exodeoxyribonucl 22.5 2.3E+02 0.0051 31.2 7.0 86 263-361 134-229 (438)
272 cd06295 PBP1_CelR Ligand bindi 22.4 5.6E+02 0.012 25.0 9.1 84 265-365 4-96 (275)
273 cd06302 PBP1_LsrB_Quorum_Sensi 22.3 4.7E+02 0.01 26.4 8.7 86 266-365 1-90 (298)
274 cd03137 GATase1_AraC_1 AraC tr 22.3 66 0.0014 30.5 2.4 37 330-366 62-106 (187)
275 cd03139 GATase1_PfpI_2 Type 1 22.2 91 0.002 29.2 3.3 36 331-366 61-104 (183)
276 cd01538 PBP1_ABC_xylose_bindin 22.1 5.1E+02 0.011 25.9 8.9 85 267-365 2-89 (288)
277 cd04962 GT1_like_5 This family 22.1 4.1E+02 0.009 27.0 8.3 58 326-387 264-335 (371)
278 cd06318 PBP1_ABC_sugar_binding 21.6 4.6E+02 0.0099 25.7 8.2 108 266-387 1-117 (282)
279 PRK11574 oxidative-stress-resi 21.4 71 0.0015 30.7 2.4 38 331-368 65-111 (196)
280 PF15431 TMEM190: Transmembran 21.2 56 0.0012 30.5 1.6 46 172-228 25-70 (134)
281 cd03805 GT1_ALG2_like This fam 21.2 4.5E+02 0.0097 27.2 8.4 61 325-388 292-364 (392)
282 COG1832 Predicted CoA-binding 21.2 2.6E+02 0.0057 27.0 6.1 89 264-365 16-106 (140)
283 PRK13710 plasmid maintenance p 20.9 3.6E+02 0.0077 23.2 6.3 46 65-116 26-72 (72)
284 cd01635 Glycosyltransferase_GT 20.7 3.3E+02 0.0072 24.8 6.7 66 277-362 14-81 (229)
285 cd06317 PBP1_ABC_sugar_binding 20.6 4.8E+02 0.01 25.3 8.1 84 267-364 2-89 (275)
286 PF02731 SKIP_SNW: SKIP/SNW do 20.5 3.2E+02 0.007 26.9 6.7 53 44-99 97-149 (158)
287 PF12107 VEK-30: Plasminogen ( 20.5 84 0.0018 20.1 1.7 14 92-105 3-16 (17)
288 cd06289 PBP1_MalI_like Ligand- 20.4 4.5E+02 0.0098 25.3 7.8 84 267-364 2-87 (268)
289 PRK12442 translation initiatio 20.3 2.5E+02 0.0053 25.2 5.3 42 500-543 19-63 (87)
290 cd06349 PBP1_ABC_ligand_bindin 20.3 5.2E+02 0.011 26.4 8.7 85 264-362 135-222 (340)
291 TIGR01737 FGAM_synth_I phospho 20.2 70 0.0015 32.2 2.2 36 331-366 39-88 (227)
292 PRK01293 phosphoribosyl-dephos 20.1 60 0.0013 33.0 1.7 23 457-479 113-135 (207)
293 TIGR00355 purH phosphoribosyla 20.1 1.7E+02 0.0038 33.6 5.4 37 266-308 2-38 (511)
No 1
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=5.1e-146 Score=1174.67 Aligned_cols=506 Identities=80% Similarity=1.269 Sum_probs=460.1
Q ss_pred CCCCCCccccccccccHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 008048 22 PHSENGFGDSLSLLQSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEWKRRFELERARNLR 101 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (579)
++++||+.++.++++||||+|||||||||+++|+||+||||||||||||||+||||||+||||||||||||||||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (508)
T PLN02935 1 SQPDNGFSDSLSLFHSEKAVQELLQQTPIQDTDDHLVEFSEALRTVAKALRRVAEGKALAQAEAAEWKRKYELERARNQQ 80 (508)
T ss_pred CCCCCccccchhhhhhHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccccccchhhhccccCCccceeccccccchhhhhhhhhhhhhhhhhhcccCCcccCCccccCCCCcccccccc
Q 008048 102 LENKGNGICEKLRSWWMQTSVNNGMGLIRLVLPCLLCWEIWKEQDRRLYEEQSFKENNSVSEGGRLENSTSQPVLLNQER 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (579)
||+|+++ |+.| +.++...++||+++|++|+++++
T Consensus 81 ~~~~~~~--------------------------~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 114 (508)
T PLN02935 81 LEHKELS--------------------------SGEC--------------------NEESNDQRLENLANQPMLYNEAI 114 (508)
T ss_pred HHHHhhh--------------------------hhhh--------------------ccccchhhhhccccccccccccc
Confidence 9999999 8888 55667779999999999999988
Q ss_pred ccccccccccccchhhhhcccc-cCCccccccccccceeEEEeecccCCCCccccceEEEecCCceeeeccCcceEeeec
Q 008048 182 EHSNRACLEHGICSHEVLQDAK-DVDSNMVNNKIMKKASFKLSWRCKGENSDQHKHDIVYFERGNITTAERSSKQISLKW 260 (579)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~kasf~~~~~~~~~~~~~h~~~v~~~~~~~i~~~~~s~k~~~l~W 260 (579)
+||++|||||||||||++ ++++.+..+.+++||||+|+|+|+|++++|||||||+|++|||+|++||+||+.|+|
T Consensus 115 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w 190 (508)
T PLN02935 115 ----NCCGMEGICSHEVLQDGSTDSDNRSVLNKVMRKASFKLSWGCKGDKSDQHKHDIVSFERGNITTAERSSKQISLKW 190 (508)
T ss_pred ----ccccccchhhhhHHhccCCCCcchhhhhhhcccCceEEEeccCCCcCcccccceeeeecCceeeccCCCceEEeee
Confidence 699999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
+++|++|+||+|++++++.+++.+|++||.+.+++.|++++..+..+............|.....+.++..++|+||+||
T Consensus 191 ~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiG 270 (508)
T PLN02935 191 ESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLG 270 (508)
T ss_pred cCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEEC
Confidence 99999999999999999999999999999855789999998766544221111111122221122233456799999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceee
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVL 420 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~AL 420 (579)
||||||+|+|.+....+||+|||+|+|||||++++++++++|+++++|+|.+++|+||+|.+.+++..........++||
T Consensus 271 GDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y~Ie~R~~L~~~v~~~~~~~~~~~~~~~~AL 350 (508)
T PLN02935 271 GDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPISITLRHRLQCHIIRDAAKNEYETEEPILVL 350 (508)
T ss_pred CcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCceEEEEeEEEEEEEcCCceecccccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999876432111112356899
Q ss_pred EeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCC
Q 008048 421 NEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEH 500 (579)
Q Consensus 421 NDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~ 500 (579)
|||+|.|+..++|+.+++||||+++++|+||||||||||||||||||||||||||++++|+|||||||+|++||||||++
T Consensus 351 NEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlTPIcPHsLs~RPIVlp~~ 430 (508)
T PLN02935 351 NEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEY 430 (508)
T ss_pred cceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEEecCCCcCCCCCeEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccCCCCCCCCCCC
Q 008048 501 VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKTQSSFDVPLD 578 (579)
Q Consensus 501 ~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~~Q~~~~~p~~ 578 (579)
++|+|++....+..+++++||+....|.+||+|.|++|++++++|++...+++||++||+||+||.|++|+ +|||++
T Consensus 431 s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~l~~~~~~Ff~~Lr~KL~Wg~R~rq~-~~~~~~ 507 (508)
T PLN02935 431 VTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQVESTNDFLRSIHDGLHWNLRKTQS-FDGPRS 507 (508)
T ss_pred CEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEeeCCCCCCHHHHHHHHcCCCcccccc-CCCCCC
Confidence 99999986544456899999999999999999999999999999987666789999999999999999999 999986
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-77 Score=619.32 Aligned_cols=318 Identities=45% Similarity=0.811 Sum_probs=278.7
Q ss_pred ceEeeecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHhhhh--cC-----CcccccccccchHH
Q 008048 254 KQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLT--ES-----SYFSFVQTWKDEKE 325 (579)
Q Consensus 254 k~~~l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~-gi~V~ve~~va~~l~~--~~-----~~~~~i~~~~~~~~ 325 (579)
..-.+.|..+|+.| +|.|+.|+++.+.+.++++||.+.. .+.||++..+++...- .. .....+..|..+ .
T Consensus 84 ~s~~l~~~~p~~~~-lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e-~ 161 (409)
T KOG2178|consen 84 LSQRLIWLKPPKNL-LVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNLDESFGVKERILYWTTE-G 161 (409)
T ss_pred hhhchhccCCCceE-EEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccchhhcccchhceEeeccc-c
Confidence 34468899876665 5556678899999999999999765 6999999998875410 00 111122334322 3
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeec
Q 008048 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRD 405 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~ 405 (579)
+.++...+|+||+||||||+|+|+++|++..||||.|++|+|||||+|+.+++++.|.++++|+..+..||||+|++.|.
T Consensus 162 ~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~~~~v~lR~RL~C~i~rk 241 (409)
T KOG2178|consen 162 CDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNGRAAVNLRMRLRCSLKRK 241 (409)
T ss_pred ccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhcCcceEeeeeeEEEEEEEe
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cccccccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEc
Q 008048 406 AAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPI 485 (579)
Q Consensus 406 ~~~~~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPI 485 (579)
....+......+++||||+|+||.+++|+.+++|+||+++++++||||||||||||||||+||||||+||.++||++|||
T Consensus 242 ~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPI 321 (409)
T KOG2178|consen 242 DLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPI 321 (409)
T ss_pred cccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchhhhHhhcCCceecCCCCeEEEecc
Confidence 54321111237899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCC
Q 008048 486 CPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565 (579)
Q Consensus 486 cPHsLs~RPlVlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg 565 (579)
|||+|||||||+|++.+++|+|+.++|..+|++|||+++.+|..||.|.|+.+.+|+++|+-.....|||+.|.++|+||
T Consensus 322 CPhSLSFRPIIlPds~~L~I~i~~dsR~~awvSfDG~~r~El~~GD~i~I~tS~ypfPti~~s~~~~dWf~sl~~~L~WN 401 (409)
T KOG2178|consen 322 CPHSLSFRPIILPDSSELRVEVPLDSRSTAWVSFDGRPRQELSLGDYIDITTSRYPFPTIISSDEESDWFESLARLLNWN 401 (409)
T ss_pred CCCcccccceEccCccEEEEEeCccccccceEEecCcchhhccCCceEEEEeccCCCceeecCcchhhHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999875444599999999999999
Q ss_pred ccCCCCCC
Q 008048 566 LRKTQSSF 573 (579)
Q Consensus 566 ~r~~Q~~~ 573 (579)
.|++||+|
T Consensus 402 ~r~rqk~~ 409 (409)
T KOG2178|consen 402 VRKRQKPF 409 (409)
T ss_pred chhhccCC
Confidence 99999976
No 3
>PLN02727 NAD kinase
Probab=100.00 E-value=1.6e-75 Score=656.88 Aligned_cols=323 Identities=46% Similarity=0.801 Sum_probs=282.4
Q ss_pred ceeeeccCcceEeeecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchH
Q 008048 245 NITTAERSSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEK 324 (579)
Q Consensus 245 ~i~~~~~s~k~~~l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~ 324 (579)
.+..+++|++|.+|.|.+||++|+||+|+++ ++.+.+.+|++||.++++++|++++..+..+... ..+.+...+.. .
T Consensus 659 ~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~-ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~-~~~~~~~~~~~-~ 735 (986)
T PLN02727 659 SLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQ-ELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARI-PGFGFVQTFYS-Q 735 (986)
T ss_pred cccccCcchhceeeecCCCCCEEEEEcCCcH-HHHHHHHHHHHHHHhCCCeEEEEecchHHHhhcc-ccccccceecc-c
Confidence 5556889999999999999999999999988 7899999999999976699999999887654221 11111111110 1
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceE-----EEEeeEE
Q 008048 325 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI-----TLRNRLQ 399 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~I-----e~R~rL~ 399 (579)
...++..++|+||+||||||||+|+|.+....+||+|||+|+|||||+++++++.+.|+++++|+|.+ ++|+||+
T Consensus 736 ~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrLGFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~ 815 (986)
T PLN02727 736 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLR 815 (986)
T ss_pred chhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCccccccCCHHHHHHHHHHHHcCCccccccccceeeEEE
Confidence 12345567999999999999999999999999999999999999999999999999999999999966 8999999
Q ss_pred EEEeeccccccccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCe
Q 008048 400 CHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPG 479 (579)
Q Consensus 400 v~V~r~~~~~~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~a 479 (579)
|.+.+++... ....++|||||+|.|+..++|+.++|||||+++++|+||||||||||||||||||||||||||++++
T Consensus 816 ~~V~r~g~~i---~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~a 892 (986)
T PLN02727 816 CEIFRNGKAM---PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPC 892 (986)
T ss_pred EEEecCCccc---ccccceEEEEEEEecCCCccEEEEEEEECCEEeEEeecceEEEECCCchHHhHhhcCCceeCCCCCe
Confidence 9998765321 0124689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCeeeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHH
Q 008048 480 ILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIH 559 (579)
Q Consensus 480 iviTPIcPHsLs~RPlVlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LR 559 (579)
|+|||||||+|++||||||++++|+|++....+..+++++||+....|.+||+|.|++|++++++|++...+.+||++||
T Consensus 893 IvITPIcPHSLs~RPIVLp~ds~I~IkI~~~sr~~a~Ls~DGq~~~~L~~GD~I~Ir~S~~~v~lVr~~~~~~dFf~~LR 972 (986)
T PLN02727 893 MLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKSDQTGDWFRSLI 972 (986)
T ss_pred EEEEecCcccCCCCCEEECCCCeEEEEEccCCCCceEEEECCCeeeecCCCCEEEEEECCceEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999999987655446899999999999999999999999999999876443459999999
Q ss_pred hhhCCCccCCCCCC
Q 008048 560 DGLHWNLRKTQSSF 573 (579)
Q Consensus 560 eKL~Wg~r~~Q~~~ 573 (579)
+||+||.|.+||+|
T Consensus 973 ~KL~W~~r~~Qk~l 986 (986)
T PLN02727 973 RCLNWNERLDQKAL 986 (986)
T ss_pred HHhCCCcccccCCC
Confidence 99999999999975
No 4
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.5e-73 Score=587.20 Aligned_cols=301 Identities=26% Similarity=0.358 Sum_probs=259.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccc-cccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSF-VQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~-i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
+++|+|++|+.++++.+++.++.+||.+ .|+++++++..+..+......... -..... .+...+..++|+||+||||
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dlvi~iGGD 78 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILGYANPDQPVCHTGIDQ-LVPPGFDSSMKFAIVLGGD 78 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccccccccccccccc-cChhhcccCcCEEEEEeCc
Confidence 4689999999999999999999999986 689999877554432110000000 000000 0112334578999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEe
Q 008048 343 GTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNE 422 (579)
Q Consensus 343 GTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALND 422 (579)
||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|.+++|+||+|++.+++.. ....+||||
T Consensus 79 GTlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y~ie~r~~L~~~v~~~~~~-----~~~~~ALNe 153 (305)
T PRK02649 79 GTVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQYTIEERTMLTVSVMRGDQL-----RWEALSLNE 153 (305)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCcEEEEeeeEEEEEEECCcc-----eeeeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999865421 124589999
Q ss_pred EEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCE
Q 008048 423 VTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVT 502 (579)
Q Consensus 423 VvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~ 502 (579)
++|.++..++|+++++++||+++.+|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++++
T Consensus 154 vvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~RplVlp~~~~ 233 (305)
T PRK02649 154 MVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSDSEP 233 (305)
T ss_pred eeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEecCcCCCCCCCEEECCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccCCCCCCCC
Q 008048 503 LRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKTQSSFDV 575 (579)
Q Consensus 503 I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~~Q~~~~~ 575 (579)
|+|++.. ...+.+++||+....|.+||.|.|++|+++++++.+ .+++||++||+||+||.+..||++..
T Consensus 234 I~i~~~~--~~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~--~~~~f~~~Lr~KL~wg~~~~~~~~~~ 302 (305)
T PRK02649 234 VTVFPAT--PERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRL--QDPEFFRVLREKLGWGLPHIAKPTSV 302 (305)
T ss_pred EEEEecC--CCcEEEEEecceeEecCCCCEEEEEECCCEEEEEEc--CCCCHHHHHHHHcCCCCCcccCCCcc
Confidence 9998754 246899999999999999999999999999999865 67899999999999999999998753
No 5
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.3e-73 Score=582.58 Aligned_cols=292 Identities=27% Similarity=0.469 Sum_probs=255.2
Q ss_pred cCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhH---hhhhcCCcccccccccchHHHhhhCCCccEE
Q 008048 260 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRA---ELLTESSYFSFVQTWKDEKEILLLHTKVDLV 336 (579)
Q Consensus 260 W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~---~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLV 336 (579)
|++++++|+|+.|++++++.+++.++.+||.+ .++++++++.... ........+. . .+..++...+|+|
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~D~v 72 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGCH----I---VNKTELGQYCDLV 72 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhcccccccc----c---cchhhcCcCCCEE
Confidence 46778999999999999999999999999986 6899999753211 0000000000 0 0112344579999
Q ss_pred EEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCc
Q 008048 337 VTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDP 416 (579)
Q Consensus 337 IvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~ 416 (579)
|+||||||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|.+++|+||++++.+++.. ...
T Consensus 73 i~lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~~~-----~~~ 147 (296)
T PRK04539 73 AVLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKT-----AER 147 (296)
T ss_pred EEECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCceEEEeeeEEEEEEECCee-----eee
Confidence 999999999999999998899999999999999999999999999999999999999999999999876432 234
Q ss_pred ceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCee
Q 008048 417 ILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLI 496 (579)
Q Consensus 417 ~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlV 496 (579)
.+||||++|.++..++|++++++|||+++++|+|||||||||||||||||||||||++|++++|++||||||+|++||+|
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~rplV 227 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIA 227 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecCcCcccCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccC
Q 008048 497 LPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 568 (579)
Q Consensus 497 lp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~ 568 (579)
+|++++|+|++.. ..++.+++||+....+.+||+|.|++|+++++++. ..+++||++||+||+|+.+.
T Consensus 228 l~~~~~i~i~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~li~--~~~~~f~~~Lr~KL~w~~~~ 295 (296)
T PRK04539 228 IPDTSEIEILVTQ--GGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILH--PTDYQYFKTLRQKLHWGEQL 295 (296)
T ss_pred ECCCCEEEEEEcC--CCcEEEEEcCCceeecCCCCEEEEEECCCceEEEE--cCCCcHHHHHHHHhcCCccc
Confidence 9999999999854 25689999999999999999999999999999875 46789999999999999764
No 6
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3e-72 Score=574.56 Aligned_cols=290 Identities=24% Similarity=0.457 Sum_probs=250.0
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+|++|+.++++.+++.++.+||.+ .++++++++..+..+.............. +...+...+|+||+|||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dlvi~lGGDGT~ 77 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFHPSYDTFS---DNEELDGSADMVISIGGDGTF 77 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhcccccccccccccc---chhhcccCCCEEEEECCcHHH
Confidence 59999999999999999999999986 68999998765543311100000000000 112344578999999999999
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEEe
Q 008048 346 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 425 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVvI 425 (579)
|+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|.+++|+||++++.+. . .....+|||||+|
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~~~~~--~----~~~~~~alNdvvi 151 (292)
T PRK01911 78 LRTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYTIEERSLLQLESNPK--L----FGELNFALNEIAI 151 (292)
T ss_pred HHHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCceEEEEeeEEEEEcCC--c----ceeeeEEEEEEEE
Confidence 999999998899999999999999999999999999999999999999999999996321 1 1124689999999
Q ss_pred ccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEEE
Q 008048 426 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 505 (579)
Q Consensus 426 ~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~I 505 (579)
.|+..++|+.++++|||+++++|+|||||||||||||||||||||||++|++++|++||||||+|++||+|+|++++|+|
T Consensus 152 ~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~RplVl~~~~~I~i 231 (292)
T PRK01911 152 LKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTEITL 231 (292)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEecccCccCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccCC
Q 008048 506 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKT 569 (579)
Q Consensus 506 ~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~~ 569 (579)
++.... ..+.+++||+. ..|.+||.|.|++|+.+++++++ .+++||++||+||+|+.+++
T Consensus 232 ~~~~~~-~~~~l~~DG~~-~~l~~gd~v~i~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~~~~~ 291 (292)
T PRK01911 232 EVESRS-DNFLVSLDSRS-ETVDNGTELTIKKADFTIKLVEL--NNHSFLKTLRNKLLWGEDKR 291 (292)
T ss_pred EEecCC-CceEEEEeCCe-eecCCCCEEEEEECCCeEEEEEe--CCCcHHHHHHHHcCCCCcCC
Confidence 886432 45789999998 68999999999999999999865 67899999999999998876
No 7
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.2e-72 Score=571.64 Aligned_cols=277 Identities=23% Similarity=0.428 Sum_probs=248.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
+++|+|++|+.+ ++.+++.++.+||++ .++++++++..+..+... . + ...++..++|+||+|||||
T Consensus 10 ~~~i~ii~~~~~-~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~~--~------~----~~~~~~~~~Dlvi~iGGDG 75 (287)
T PRK14077 10 IKKIGLVTRPNV-SLDKEILKLQKILSI-YKVEILLEKESAEILDLP--G------Y----GLDELFKISDFLISLGGDG 75 (287)
T ss_pred CCEEEEEeCCcH-HHHHHHHHHHHHHHH-CCCEEEEecchhhhhccc--c------c----chhhcccCCCEEEEECCCH
Confidence 778999999986 899999999999986 689999987655433110 0 0 0122345799999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeE
Q 008048 344 TVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 423 (579)
Q Consensus 344 TlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDV 423 (579)
|||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|.+++|++|+|++.+.++. ....+||||+
T Consensus 76 T~L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~ie~r~~L~~~v~~~~~~-----~~~~~AlNev 150 (287)
T PRK14077 76 TLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFEIEKPYMLSVFLEKKQGK-----ILEKLAFNDV 150 (287)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCeEEEEEEEEEEEEeCCce-----EEEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999765422 1235799999
Q ss_pred EeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEE
Q 008048 424 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTL 503 (579)
Q Consensus 424 vI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I 503 (579)
+|.++..++|+.+++++||+++++|+|||||||||||||||||||||||++|++++|++||||||+|++||+|+|++++|
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Phsl~~rpiVl~~~~~I 230 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFEV 230 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEecccccccCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCC
Q 008048 504 RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565 (579)
Q Consensus 504 ~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg 565 (579)
+|++. .++.+++||+....+.+||+|.|++|+.+++++. ..+++||+.||+||+|+
T Consensus 231 ~i~~~----~~~~l~~DG~~~~~l~~~d~i~I~~s~~~~~lv~--~~~~~f~~~Lr~KL~w~ 286 (287)
T PRK14077 231 EFKTK----SDCILCIDGQDRYKMNDFKSIKVGLSDKNVALIR--HKNRDYFQILKEKLHWG 286 (287)
T ss_pred EEEEC----CCEEEEEcCCeeEecCCCCEEEEEECCCEEEEEE--CCCCCHHHHHHHHhCCC
Confidence 99863 2689999999999999999999999999999875 46789999999999997
No 8
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.6e-71 Score=569.23 Aligned_cols=289 Identities=27% Similarity=0.468 Sum_probs=255.4
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
+..+++|+|++|+.++++.+++.++.+||.+ .++++++++..+..+.... . . ..+..++..++|+||+||
T Consensus 2 ~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~--~---~----~~~~~~~~~~~d~vi~lG 71 (292)
T PRK03378 2 NNHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQLKN--V---K----TGTLAEIGQQADLAIVVG 71 (292)
T ss_pred CccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc--c---c----ccchhhcCCCCCEEEEEC
Confidence 4558899999999999999999999999986 6899999876554321000 0 0 001123445799999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceee
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVL 420 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~AL 420 (579)
||||||+|+|.+...++||+|||+|+||||++++++++.++|+++++|+|.+++|++|++++.+++.. ....+||
T Consensus 72 GDGT~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~aL 146 (292)
T PRK03378 72 GDGNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHYISEKRFLLEAQVCRHGQQ-----KRISTAI 146 (292)
T ss_pred CcHHHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCceEEEEEEEEEEEEeCCce-----EEeEEEE
Confidence 99999999999998899999999999999999999999999999999999999999999999865422 1346899
Q ss_pred EeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCC
Q 008048 421 NEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEH 500 (579)
Q Consensus 421 NDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~ 500 (579)
||++|.++..++|+++++++||+++++|+|||||||||||||||||||||||++|++++|++||||||+|++||+|+|++
T Consensus 147 Ndvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI~Phsl~~rplVl~~~ 226 (292)
T PRK03378 147 NEVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIDSS 226 (292)
T ss_pred EEEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEecccccCCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCcc
Q 008048 501 VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 567 (579)
Q Consensus 501 ~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r 567 (579)
++|+|++... ...+.+++||+....|.+||+|.|++|+++++++++ .+++||++||+||+|+..
T Consensus 227 ~~i~i~~~~~-~~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~~~ 290 (292)
T PRK03378 227 STIRLKFSPN-RSDLEISCDSQIALPIQPGEEVLIRRSDYHLNLIHP--KDYSYFNTLRTKLGWSKK 290 (292)
T ss_pred CEEEEEEccC-CCcEEEEECCceEEEcCCCcEEEEEECCCEEEEEEc--CCCCHHHHHHHHcCCCCC
Confidence 9999998642 356899999999999999999999999999999754 678999999999999853
No 9
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2e-71 Score=571.67 Aligned_cols=294 Identities=22% Similarity=0.326 Sum_probs=254.9
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCccc---ccccccchHHHhhhCCCccEEEE
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFS---FVQTWKDEKEILLLHTKVDLVVT 338 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~---~i~~~~~~~~~~~l~~~~DLVIv 338 (579)
++|++|+||.|+.++++.+++.++++||.+ .++++++++..+..+........ ...... ....+..++|+||+
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD---ADPDAADGCELVLV 78 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc---chhhcccCCCEEEE
Confidence 568999999999999999999999999986 68999987755443211000000 000000 01233456899999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcce
Q 008048 339 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPIL 418 (579)
Q Consensus 339 LGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ 418 (579)
||||||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|.+++|+||+|++.+++.. ....+
T Consensus 79 lGGDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~R~~L~~~v~~~g~~-----~~~~~ 153 (306)
T PRK03372 79 LGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDYRVEERMTLDVTVRVGGEI-----VWRGW 153 (306)
T ss_pred EcCCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCceEEEeeeEEEEEEECCEE-----Eeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999865422 13458
Q ss_pred eeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeC
Q 008048 419 VLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILP 498 (579)
Q Consensus 419 ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp 498 (579)
||||++|.++..++|+.++++|||+++++|+|||||||||||||||||||||||++|++++|++||||||+|++||+|+|
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Ph~l~~RplVv~ 233 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVVS 233 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecccccCCCCCeEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCcc
Q 008048 499 EHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 567 (579)
Q Consensus 499 ~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r 567 (579)
++++|+|++.... .++.+++||+....|.+||+|.|++|+++++++.+ .+++||++||+||.|..-
T Consensus 234 ~~~~I~i~~~~~~-~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~--~~~~f~~~Lr~KL~~~~~ 299 (306)
T PRK03372 234 PTSTVAVEILADT-SDAVLWCDGRRSVDLPPGARVEVRRGATPVRLARL--DSAPFTDRLVRKFRLPVT 299 (306)
T ss_pred CCCEEEEEEecCC-CcEEEEEcCCeeEecCCCCEEEEEECCCeEEEEEe--CCCCHHHHHHHHcCCCCC
Confidence 9999999986533 46899999999999999999999999999999865 668999999999999943
No 10
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.2e-69 Score=556.04 Aligned_cols=288 Identities=28% Similarity=0.456 Sum_probs=254.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
+++|+||+|+.++.+.++++++.+||.+ .++++++++.....+.... .. . .+...+...+|+||++||||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~~--~~----~---~~~~~~~~~~d~vi~~GGDG 73 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGHG--LQ----T---VSRKLLGEVCDLVIVVGGDG 73 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc--cc----c---cchhhcccCCCEEEEEeCcH
Confidence 6789999999999999999999999986 6899999875543321110 00 0 01122345689999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeE
Q 008048 344 TVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 423 (579)
Q Consensus 344 TlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDV 423 (579)
|||++++.+...++||+|||+|+||||++++++++.++|+++++|+|.+++|+||+|.+.+.+.. ...++||||+
T Consensus 74 t~l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~ALNev 148 (295)
T PRK01231 74 SLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHYQEEERFLLEAEVRRGGEV-----IGQGDALNDV 148 (295)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCceEEEEEEEEEEEEECCcE-----EeeeeEEEEE
Confidence 99999999988899999999999999999999999999999999999999999999999865321 1346899999
Q ss_pred EeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEE
Q 008048 424 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTL 503 (579)
Q Consensus 424 vI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I 503 (579)
+|.++.+++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++++|
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ph~l~~rpiVl~~~~~I 228 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCCCccCCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccC
Q 008048 504 RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 568 (579)
Q Consensus 504 ~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~ 568 (579)
+|++....+..+.+++||+....|.+||.|.|++++.+++++.+ .+++||++||+||+|+.+.
T Consensus 229 ~i~~~~~~~~~~~l~~DG~~~~~l~~g~~i~i~~s~~~~~l~~~--~~~~f~~~l~~KL~w~~~~ 291 (295)
T PRK01231 229 KIVISKDNRTYPRVSCDGQNSVTLAPGDTVTIRKKPQKLRLIHP--LDYNYYETCRTKLGWGSRL 291 (295)
T ss_pred EEEEccCCCCceEEEeCCCceEecCCCCEEEEEECCCeEEEEEc--CCCCHHHHHHHhcCCCCCc
Confidence 99986544456899999999999999999999999999998754 6789999999999999864
No 11
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=3.8e-69 Score=551.23 Aligned_cols=287 Identities=28% Similarity=0.459 Sum_probs=253.0
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
..++++|+|+.|+.++.+.+++.++++||++ .+++++++...+....... +. .. ..+++...+|+||++|
T Consensus 2 ~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~~--~~---~~----~~~~~~~~~d~vi~~G 71 (291)
T PRK02155 2 KSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGLTG--YP---AL----TPEEIGARADLAVVLG 71 (291)
T ss_pred CCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc--cc---cc----ChhHhccCCCEEEEEC
Confidence 3457899999999999999999999999986 6899999875544221100 00 00 1123345789999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceee
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVL 420 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~AL 420 (579)
||||||+++|.+...++|++|||+|+||||+++++++++++|+++++|+|.+++|+||+|++.+++.. ....+||
T Consensus 72 GDGt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~Al 146 (291)
T PRK02155 72 GDGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYEEEERMLLEARVVRDGEP-----IFHALAF 146 (291)
T ss_pred CcHHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCceEEEeEEEEEEEEECCeE-----EEeeeee
Confidence 99999999999988899999999999999999999999999999999999999999999998765421 1246899
Q ss_pred EeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCC
Q 008048 421 NEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEH 500 (579)
Q Consensus 421 NDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~ 500 (579)
||++|.++.+++|++++++|||+++.+|+|||||||||||||||||||||||++|++++|++||||||+++.||+|+|++
T Consensus 147 Nev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~p~~l~~rpiVl~~~ 226 (291)
T PRK02155 147 NDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDD 226 (291)
T ss_pred eheeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecCcCccCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCc
Q 008048 501 VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNL 566 (579)
Q Consensus 501 ~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~ 566 (579)
++|+|++.. . .++.+++||+....+.+||.|.|++++.+++++.+ .+++||+.||+||+|+.
T Consensus 227 ~~i~i~~~~-~-~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~~~~--~~~~f~~~l~~Kl~w~~ 288 (291)
T PRK02155 227 SEVAIQIVG-G-RDVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHP--VGYSYYATLRKKLHWNE 288 (291)
T ss_pred CEEEEEEcC-C-CcEEEEEcCCcceeCCCCCEEEEEECCCeEEEEec--CCCCHHHHHHHhcCCCC
Confidence 999999865 3 37899999999999999999999999999998754 67899999999999994
No 12
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.8e-69 Score=545.62 Aligned_cols=268 Identities=25% Similarity=0.436 Sum_probs=234.4
Q ss_pred HHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEE
Q 008048 282 CAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVP 361 (579)
Q Consensus 282 ~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILG 361 (579)
++++.+||.+ .++++++++..+..+.... . .+. ...++...+|+||+||||||||+|+|.+...++||+|
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~--~----~~~---~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~Pilg 71 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLNLPE--N----HLA---SLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIG 71 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcCccc--c----ccC---ChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEE
Confidence 5789999986 6899999876544321000 0 000 1123445789999999999999999999888999999
Q ss_pred EcCCCCccCcCCCcchHHHHHHHHHc-CCceEEEEeeEEEEEeeccccccccccCcceeeEeEEeccCCCcceeeeEEEe
Q 008048 362 FSLGSLGFMTPFHSEHYKDYLDSVLR-GPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYC 440 (579)
Q Consensus 362 INlG~LGFLt~~~~edi~~~L~~il~-G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVvI~rg~~s~mi~leV~I 440 (579)
||+|+||||++++++++.+.|+++++ |+|.+++|+||+|++.+++.. ....+||||++|.++..++|+++++++
T Consensus 72 In~G~lGFL~~~~~~~~~~~l~~~~~~g~~~i~~r~~L~~~v~~~~~~-----~~~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 72 INRGNLGFLTDIDPKNAYEQLEACLERGEFFVEERFLLEAKIERNGKI-----IATSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred EeCCCCcccccCCHHHHHHHHHHHHhcCCceEEEeeeEEEEEEECCeE-----eeeeEEEEEEEEecCCCCceEEEEEEE
Confidence 99999999999999999999999999 999999999999998765421 124689999999999999999999999
Q ss_pred CCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEEEEeecCCCCCEEEEEe
Q 008048 441 DNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFD 520 (579)
Q Consensus 441 Dge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~I~v~~~sr~~a~vsiD 520 (579)
||+++.+|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++++|+|++.......+.+++|
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~Phsl~~RpiVl~~~~~I~i~~~~~~~~~~~l~~D 226 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAEYNTPQLEVSCD 226 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEeccccccCCCCEEECCCCEEEEEEcCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985433345899999
Q ss_pred CCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCc
Q 008048 521 GKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNL 566 (579)
Q Consensus 521 Gq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~ 566 (579)
|+....|.+||+|.|++|+.+++++++ .+++||++||+||+|+.
T Consensus 227 G~~~~~l~~~d~v~I~~s~~~~~lv~~--~~~~f~~~Lr~KL~w~~ 270 (272)
T PRK02231 227 SQIALPFTPDDRVHVQKSPDKLRLLHL--KNYNYYNVLSSKLGWLK 270 (272)
T ss_pred CCeEEEeCCCcEEEEEEcCCEEEEEEc--CCCCHHHHHHHHhCCCC
Confidence 999999999999999999999999864 67899999999999994
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4.7e-67 Score=531.42 Aligned_cols=265 Identities=23% Similarity=0.377 Sum_probs=235.4
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+|++|+.++++.+++.++++|| + .+++++++...+..+... . .. .... ++|+||++||||||
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~~~--~------~~----~~~~--~~D~vi~lGGDGT~ 65 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALGMD--G------LD----IEEI--NADVIITIGGDGTI 65 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcCcc--c------Cc----cccc--CCCEEEEEcCcHHH
Confidence 499999999999999999999999 4 489999877654432100 0 00 0111 68999999999999
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEEe
Q 008048 346 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 425 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVvI 425 (579)
|+|+|.+. +||+|||+|+||||+++++++++++|+++++|+|.+++|+||++.+. +. ...+||||++|
T Consensus 66 L~a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~v~--g~-------~~~~aLNdvvv 133 (271)
T PRK01185 66 LRTLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYFIDERMKLKVYIN--GE-------RLEDCTNEAVI 133 (271)
T ss_pred HHHHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCcEEEEeeEEEEEEC--Cc-------EeEEEEEEEEE
Confidence 99999874 49999999999999999999999999999999999999999999982 21 23479999999
Q ss_pred ccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEEE
Q 008048 426 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 505 (579)
Q Consensus 426 ~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~I 505 (579)
.++.+++|+++++++||+++.+|+|||||||||||||||||||||||++|++++|++||||||+++.||+|+|++++|+|
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~rplVl~~~~~I~i 213 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEI 213 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecccCCCCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhC
Q 008048 506 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLH 563 (579)
Q Consensus 506 ~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~ 563 (579)
++.. ..++.+++||+...+|.+||+|.|++|+.+++++.+ .+ +||++||+||.
T Consensus 214 ~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~v~~--~~-~f~~~Lr~KL~ 266 (271)
T PRK01185 214 KIAG--DQSSLLILDGQYEYKISKGDTVEISKSENYARFISF--RE-SPYDRIREKLI 266 (271)
T ss_pred EEcC--CCCEEEEECCCceEecCCCCEEEEEECCCeeEEEEc--CC-CHHHHHHHHHh
Confidence 9854 357899999999999999999999999999999875 34 89999999984
No 14
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.5e-66 Score=534.87 Aligned_cols=294 Identities=28% Similarity=0.405 Sum_probs=250.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
++++|+||+|+.++.+.+.+.++.+||.+ .+++++++.......... .+ .......+|+||++|||
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~--------~~-----~~~~~~~~d~vi~~GGD 67 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNPYP--------VF-----LASASELIDLAIVLGGD 67 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhcccc--------ch-----hhccccCcCEEEEECCc
Confidence 36799999999999999999999999975 689988876433211000 00 01223568999999999
Q ss_pred hHHHHHHHhcCCCCCcEEEEcC-CCCccCcCCC--cchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCccee
Q 008048 343 GTVLWAASIFKGPVPPIVPFSL-GSLGFMTPFH--SEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILV 419 (579)
Q Consensus 343 GTlL~AAr~~~~~~~PILGINl-G~LGFLt~~~--~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~A 419 (579)
||||++++.+.+.++||+|||+ |+||||+++. .++ +++|+++++|+|.+++|+||+|++.+++..+.......++|
T Consensus 68 GT~l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~i~~r~~L~~~~~~~~~~~~~~~~~~~~A 146 (305)
T PRK02645 68 GTVLAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRYAIERRMMLQARVFEGDRSNEEPVSESYYA 146 (305)
T ss_pred HHHHHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCceEEEeeEEEEEEEeCCcccccccccceEE
Confidence 9999999999888999999999 8999999985 445 89999999999999999999999876542111111235689
Q ss_pred eEeEEeccCCCcceee--eEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeee
Q 008048 420 LNEVTIDRGISSYLTN--LECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 497 (579)
Q Consensus 420 LNDVvI~rg~~s~mi~--leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVl 497 (579)
|||++|.++..++++. ++|+|||+++.+|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+
T Consensus 147 lNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~l~~rplVl 226 (305)
T PRK02645 147 LNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPIVI 226 (305)
T ss_pred EeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCcccccCCCEEE
Confidence 9999999988888764 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccCCCCC
Q 008048 498 PEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKTQSS 572 (579)
Q Consensus 498 p~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~~Q~~ 572 (579)
|++++|+|++.......+.+++||+....+.+||.|.|++|+.+++++.+ ...++||+.|++||+|+.+..|+.
T Consensus 227 p~~~~i~i~~~~~~~~~~~l~~DG~~~~~l~~~~~i~i~~s~~~~~~v~~-~~~~~f~~~L~~Kl~w~~~~~~~~ 300 (305)
T PRK02645 227 PPGSRVVIWPLGDYDLNIKLWKDGVLATSIWPGQRCVIQKARHPAKFIIL-EESYSYYRTLREKLHWAGSLIHYN 300 (305)
T ss_pred CCCCEEEEEEcCCCCCcEEEEECCCcceecCCCCEEEEEECCCceEEEEe-CCCCCHHHHHHHHcCCCCcccccc
Confidence 99999999875433345889999999999999999999999999999865 334599999999999999988874
No 15
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.6e-66 Score=568.65 Aligned_cols=289 Identities=27% Similarity=0.473 Sum_probs=254.5
Q ss_pred eEeeecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCcc
Q 008048 255 QISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVD 334 (579)
Q Consensus 255 ~~~l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~D 334 (579)
.+.-+|.++|++|+||+|+.++++.+++.++++||.+ .++++++++..+..+..... ..+. .... ..++|
T Consensus 281 ~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~~~-----~~~~---~~~~-~~~~d 350 (569)
T PRK14076 281 IFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNRLN-----EECN---LIDD-IEEIS 350 (569)
T ss_pred hhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccccc-----cccc---cccc-ccCCC
Confidence 3456899999999999999999999999999999986 68999998765543321000 0000 0001 23689
Q ss_pred EEEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeecccccccccc
Q 008048 335 LVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIE 414 (579)
Q Consensus 335 LVIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~ 414 (579)
+||+||||||||+++|.+...++||+|||+|+||||++++++++.+.|+++++|+|.+++|+||+|++.+++.. .
T Consensus 351 lvi~lGGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-----~ 425 (569)
T PRK14076 351 HIISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEYEIEKRTKLSGFILKDGHQ-----N 425 (569)
T ss_pred EEEEECCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCceEEEeEEEEEEEEECCcc-----e
Confidence 99999999999999999998999999999999999999999999999999999999999999999999875422 2
Q ss_pred CcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCC
Q 008048 415 DPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRP 494 (579)
Q Consensus 415 ~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RP 494 (579)
...+||||++|.++.+++|+.++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||+++.||
T Consensus 426 ~~~~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tPI~ph~l~~rp 505 (569)
T PRK14076 426 ILPSALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRP 505 (569)
T ss_pred eeeEEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEeeccCCCCCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCC
Q 008048 495 LILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565 (579)
Q Consensus 495 lVlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg 565 (579)
+|+|++++|+|++.. .++.+++||+...+|.+||+|.|++|++++++++. ++||++||+||+-|
T Consensus 506 lV~~~~~~i~i~~~~---~~~~l~~DG~~~~~l~~gd~I~I~~s~~~~~~v~~----~~f~~~Lr~Kl~~~ 569 (569)
T PRK14076 506 LVVSANSEIKIKLLK---KSALVVIDGSIEFEAKKGDEIIFRKSDSYAYFVKG----DNFYNKLKKLSLMG 569 (569)
T ss_pred EEECCCCEEEEEEeC---CcEEEEECCceeeecCCCCEEEEEECCceEEEEec----chHHHHHHHHhCCC
Confidence 999999999999842 46899999999999999999999999999999863 27999999999754
No 16
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.1e-65 Score=517.62 Aligned_cols=255 Identities=18% Similarity=0.316 Sum_probs=229.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
+++|+|+.++.+ .+.++++++.+||++ .|+++.++ ..++|+||++||||
T Consensus 2 ~~~i~iv~~~~~-~a~~~~~~l~~~l~~-~g~~~~~~-----------------------------~~~~D~vi~lGGDG 50 (264)
T PRK03501 2 RRNLFFFYKRDK-ELVEKVKPLKKIAEE-YGFTVVDH-----------------------------PKNANIIVSIGGDG 50 (264)
T ss_pred CcEEEEEECCCH-HHHHHHHHHHHHHHH-CCCEEEcC-----------------------------CCCccEEEEECCcH
Confidence 458999999888 899999999999986 57776532 02479999999999
Q ss_pred HHHHHHHhcCCC-CCcEEEEcC-CCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeE
Q 008048 344 TVLWAASIFKGP-VPPIVPFSL-GSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLN 421 (579)
Q Consensus 344 TlL~AAr~~~~~-~~PILGINl-G~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALN 421 (579)
|||+|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+|.+++|++|++.+. +. ...+|||
T Consensus 51 T~L~a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~v~--~~-------~~~~alN 121 (264)
T PRK03501 51 TFLQAVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEIEVRKYPTIEVTVD--GS-------TSFYCLN 121 (264)
T ss_pred HHHHHHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCcEEEEeeeEEEEEC--Cc-------cceEEEE
Confidence 999999998765 789999999 999999999999999999999999999999999999972 21 1358999
Q ss_pred eEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCC-C----CCee
Q 008048 422 EVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS-F----RPLI 496 (579)
Q Consensus 422 DVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs-~----RPlV 496 (579)
|++| ++..++|+.++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+++ + ||+|
T Consensus 122 evvi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~rpiV 200 (264)
T PRK03501 122 EFSI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLGSPFI 200 (264)
T ss_pred EEEE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCCCCEE
Confidence 9999 77788999999999999999999999999999999999999999999999999999999999987 5 9999
Q ss_pred eCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhh
Q 008048 497 LPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGL 562 (579)
Q Consensus 497 lp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL 562 (579)
+|++++|+|++.......+.+++||+. .+|.+||+|.|++|+.+++++++ .+++||++||+|+
T Consensus 201 l~~~~~I~i~~~~~~~~~~~l~~DG~~-~~l~~~d~i~I~~s~~~~~lv~~--~~~~f~~~Lr~Kf 263 (264)
T PRK03501 201 LSHERKLTLKIVQDGNDYPIIGMDNEA-LSIKHVEKIDIRLSDKQIKTVKL--KDNSFWEKVKRTF 263 (264)
T ss_pred ECCCCEEEEEEecCCCCcEEEEEeCCE-EEcCCCCEEEEEECCCEEEEEEe--CCCCHHHHHHHhh
Confidence 999999999986433346889999998 99999999999999999999865 6689999999997
No 17
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.5e-65 Score=518.85 Aligned_cols=274 Identities=27% Similarity=0.442 Sum_probs=240.6
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCchH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDGT 344 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDGT 344 (579)
+|+||.|+.++++.+++.++.+||++ .++++.+++........ .... ..... ..++|+||++|||||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~-~~~~----------~~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPE-FSEE----------DVLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccc----------ccccccccCCCEEEEEeCcHH
Confidence 69999999999999999999999986 68999987543322110 0000 00011 136899999999999
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEE
Q 008048 345 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 424 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVv 424 (579)
+|+++| +...++||+|||+|++|||++++++++.++|+++++|+|.+++|++|++.+. +. ..++||||++
T Consensus 70 lL~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~~~--~~-------~~~~alNdv~ 139 (277)
T PRK03708 70 ILRIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDYFIDERIKLRVYIN--GE-------NVPDALNEVV 139 (277)
T ss_pred HHHHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCceEEEeEEEEEEEC--Ce-------EeEEEeeeEE
Confidence 999999 6778999999999999999999999999999999999999999999999872 11 1367999999
Q ss_pred eccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEE
Q 008048 425 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 504 (579)
Q Consensus 425 I~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~ 504 (579)
|.++.+++|+.+++++||+++.+|+|||||||||||||||||||||||+||++++|++||||||+++.||+|+|++++|+
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~p~~l~~rplV~~~~~~i~ 219 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRID 219 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecccccCCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCC
Q 008048 505 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565 (579)
Q Consensus 505 I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg 565 (579)
|++...+ .++.+++||+....+.+||+|.|++|+++++++.+ . ++||++||+||.|.
T Consensus 220 l~~~~~~-~~~~l~~DG~~~~~l~~~~~v~i~~s~~~~~~~~~--~-~~f~~~lr~KL~~~ 276 (277)
T PRK03708 220 VKLLRTG-REIILVIDGQYYEELPPDTEITIKKSPRKTKFVRF--S-KEIYPKYTMKIKER 276 (277)
T ss_pred EEEecCC-CcEEEEECCCeeEecCCCCEEEEEECCCeEEEEec--C-CcHHHHHHHHhhhc
Confidence 9975433 46899999999999999999999999999999865 3 69999999999985
No 18
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=6.6e-65 Score=517.12 Aligned_cols=281 Identities=35% Similarity=0.604 Sum_probs=252.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++|+|+.+++++++...++.+..|+.. .+..+.++...++.+... .. .. ....+.+|+||++|||||
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~---~~----~~-----~~~~~~~d~ivvlGGDGt 67 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF---AD----YV-----DDDEEKADLIVVLGGDGT 67 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc---cc----cc-----cccccCceEEEEeCCcHH
Confidence 479999999999999999999999985 688888888777755421 00 00 011267999999999999
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEE
Q 008048 345 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 424 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVv 424 (579)
||++++++...++||+|||+|+|||||+++++++++.++++++|+|.+++|+||++.+.+.+ ....+|||||+
T Consensus 68 lL~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~v~~~~-------~~~~~aLNEv~ 140 (281)
T COG0061 68 LLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEYRIEERLLLEVSVNRGD-------IRRALALNEVV 140 (281)
T ss_pred HHHHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCceEEEEeEEEEEEEEeCC-------ccccceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998753 25689999999
Q ss_pred eccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEE
Q 008048 425 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 504 (579)
Q Consensus 425 I~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~ 504 (579)
|.++..++|+.+++|+||+++++++||||||||||||||||+|||||||||++++|++||||||++++||+|+|..++|+
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p~~l~~Rpiv~p~~~~v~ 220 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVR 220 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecCCCcccCCCEEECCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCc
Q 008048 505 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNL 566 (579)
Q Consensus 505 I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~ 566 (579)
+++....+.++++++||+....+.+||+|.|++++++++++.... ..+||++|++||+|+.
T Consensus 221 i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 281 (281)
T COG0061 221 IEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRS-YDDFFERLRSKLIWGV 281 (281)
T ss_pred EEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCC-cccHHHHHHHHhcCCC
Confidence 998766666689999999999999999999999999999875432 2389999999999984
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4e-63 Score=501.28 Aligned_cols=251 Identities=23% Similarity=0.374 Sum_probs=224.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+|+.+ .++++.+++.++.+||.+ .++++ + ..++|+||++||||||
T Consensus 2 ~i~Ii~~-~~~~~~~~~~~l~~~l~~-~g~~~--~-----------------------------~~~~Dlvi~iGGDGT~ 48 (265)
T PRK04885 2 KVAIISN-GDPKSKRVASKLKKYLKD-FGFIL--D-----------------------------EKNPDIVISVGGDGTL 48 (265)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHHHH-cCCcc--C-----------------------------CcCCCEEEEECCcHHH
Confidence 4999999 788999999999999975 45541 1 0247999999999999
Q ss_pred HHHHHhcCC--CCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeE
Q 008048 346 LWAASIFKG--PVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 423 (579)
Q Consensus 346 L~AAr~~~~--~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDV 423 (579)
|+|+|.+.+ .++||+|||+|+||||++++++++++.|+++++|+|.+++|++|++++.++++. ....+||||+
T Consensus 49 L~a~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~r~~L~~~v~~~~~~-----~~~~~alNev 123 (265)
T PRK04885 49 LSAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQVVSYPLLEVKITYEDGE-----KEKYLALNEA 123 (265)
T ss_pred HHHHHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCceEEEEeeEEEEEEeCCCc-----Eeeeeeeeee
Confidence 999999987 699999999999999999999999999999999999999999999998765321 1236899999
Q ss_pred EeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCC-------Cee
Q 008048 424 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFR-------PLI 496 (579)
Q Consensus 424 vI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~R-------PlV 496 (579)
+|.++. +++.++++|||+++.+|+|||||||||||||||||||||||++|++++|++||||| ++.| |+|
T Consensus 124 ~i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~--l~~r~~~~~~~plV 199 (265)
T PRK04885 124 TIKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIAS--INNRVFRTLGSPLI 199 (265)
T ss_pred eeccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeecc--ccccccccCCCCEE
Confidence 999874 69999999999999999999999999999999999999999999999999999997 4455 999
Q ss_pred eCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhC
Q 008048 497 LPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLH 563 (579)
Q Consensus 497 lp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~ 563 (579)
+|++++|+|++.. ...+.+++||+. .++.+||+|.|++|+.+++++.+ .+++||++||+||-
T Consensus 200 l~~~~~I~i~~~~--~~~~~l~~DG~~-~~l~~~d~i~i~~s~~~~~li~~--~~~~f~~~Lr~Kf~ 261 (265)
T PRK04885 200 LPKHHTITLKPVN--DDDYQITVDHLT-IKHKNVKSIEYRVANEKIRFARF--RHFPFWKRVKDSFI 261 (265)
T ss_pred ECCCCEEEEEEcC--CCcEEEEECCCE-eecCCCCEEEEEECCceEEEEEc--CCCCHHHHHHHHhc
Confidence 9999999999753 346899999999 99999999999999999999865 66899999999974
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.4e-61 Score=485.69 Aligned_cols=254 Identities=24% Similarity=0.337 Sum_probs=225.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+++|++|+. +.+.+.++.+||.+ .++.+..+.+.. ....++|+||++||||||
T Consensus 2 ~~~~~~~~~---~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------------------~~~~~~d~vi~iGGDGT~ 54 (256)
T PRK14075 2 KLGIFYREE---KEKEAKFLKEKISK-EHEVVEFCEASA-----------------------SGKVTADLIIVVGGDGTV 54 (256)
T ss_pred EEEEEeCcc---HHHHHHHHHHHHHH-cCCeeEeecccc-----------------------cccCCCCEEEEECCcHHH
Confidence 578886665 56788999999986 466666543210 112468999999999999
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEEe
Q 008048 346 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 425 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVvI 425 (579)
|+|+|.+ ++||+|||+|+||||+++++++++++|+++++|+|.+++|++|++++.. ...+||||++|
T Consensus 55 L~a~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~----------~~~~alNev~i 121 (256)
T PRK14075 55 LKAAKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNFREEKRWFLKIESEL----------GNHLALNDVTL 121 (256)
T ss_pred HHHHHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCcEEEEeeEEEEEEcC----------CcEEEEEEEEE
Confidence 9999998 7899999999999999999999999999999999999999999998742 13589999999
Q ss_pred ccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEEE
Q 008048 426 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 505 (579)
Q Consensus 426 ~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~I 505 (579)
.++.+++++++++++||+.+.+|+||||||||||||||||+||||||++|+++++.+||||||+++.||+|+|++.+|+|
T Consensus 122 ~~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI~Ph~L~~rpiVlp~~~~I~I 201 (256)
T PRK14075 122 ERDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTV 201 (256)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeeeehhhcCCCceEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccC
Q 008048 506 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 568 (579)
Q Consensus 506 ~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~ 568 (579)
++. .++.+.+||+. +.+++.|+|+.++..+++++ ..+++||+.||+||+|+.|.
T Consensus 202 ~~~----~~~~l~iDGe~---~~~~~~I~I~~s~~~l~li~--~~~~~f~~~l~~kl~w~~~~ 255 (256)
T PRK14075 202 ESQ----RDINLIVDGVL---VGKTNRITVKKSRRYVRILR--PKDYDFVTVIKEKLGYGRRI 255 (256)
T ss_pred EEC----CceEEEECCCC---cCCCcEEEEEECCCEEEEEE--cCCCCHHHHHHHHhcCCcCC
Confidence 862 36889999986 56789999999999999875 46789999999999999864
No 21
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.9e-60 Score=480.35 Aligned_cols=245 Identities=20% Similarity=0.314 Sum_probs=212.1
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
++.|++++. +.+.+++.++.++++.. ++ ...++|+||+|||||||
T Consensus 2 ~~~i~~~~~-~~s~~~~~~l~~~~~~~-~~---------------------------------~~~~~D~vi~iGGDGT~ 46 (259)
T PRK00561 2 KYKIFASTT-PQTEPVLPKLKKVLKKK-LA---------------------------------VEDGADYLFVLGGDGFF 46 (259)
T ss_pred EEEEEeCCC-HHHHHHHHHHHHHHhhC-CC---------------------------------ccCCCCEEEEECCcHHH
Confidence 578888855 45667777777777531 11 01348999999999999
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHH-HHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEE
Q 008048 346 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKD-YLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 424 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~-~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVv 424 (579)
|+|+|.+...++||+|||+|+||||++++++++++ .++.+.+ |.+++|++|++.+.+ ...+||||++
T Consensus 47 L~a~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~~~~~r~~L~~~~~~----------~~~~AlNE~v 114 (259)
T PRK00561 47 VSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--LKFTQIDLLEVQIDD----------QIHLVLNELA 114 (259)
T ss_pred HHHHHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--CCeEEEEEEEEEECC----------CeeEEEEEEE
Confidence 99999999899999999999999999999999998 7777765 778999999998722 1358999999
Q ss_pred eccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCC-----CCCCCeeeCC
Q 008048 425 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHS-----LSFRPLILPE 499 (579)
Q Consensus 425 I~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHs-----Ls~RPlVlp~ 499 (579)
|.++. ++.++++|||+++++|+|||||||||||||||||||||||++|++++|++||||||+ +..||+|+|+
T Consensus 115 i~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~Ph~~~~~~~~~rplVl~~ 191 (259)
T PRK00561 115 VYTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQSPIILPI 191 (259)
T ss_pred EccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeCCCCcccccccCCCeEECC
Confidence 99865 679999999999999999999999999999999999999999999999999999998 4579999999
Q ss_pred CCEEEEEeecCC--CCCEEEEEeCCcccccCCCCEEEEEecCCcee-eeeecCCCCChHHHHHhhh
Q 008048 500 HVTLRVQIPFNS--RSPAWASFDGKDRKQLAPGDALVCSMAPWPVP-TACQVDSTDDFFRSIHDGL 562 (579)
Q Consensus 500 ~~~I~I~v~~~s--r~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~-lv~l~~~~~dff~~LReKL 562 (579)
+++|+|++.... +..+.+++||+....+.+||+|.|++++.+++ ++. ..+++||++||+||
T Consensus 192 ~~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~~~v~--~~~~~f~~~Lr~Kf 255 (259)
T PRK00561 192 DTKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAMFVAS--LKTRDFIQKLKSTF 255 (259)
T ss_pred CCEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccceEEEE--CCCCCHHHHHHHHh
Confidence 999999985422 13578999999999999999999999999999 564 46789999999997
No 22
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=1.5e-60 Score=484.30 Aligned_cols=274 Identities=38% Similarity=0.636 Sum_probs=232.9
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCC-cccccc---------cccchHHHhhhCCCccE
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS-YFSFVQ---------TWKDEKEILLLHTKVDL 335 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~-~~~~i~---------~~~~~~~~~~l~~~~DL 335 (579)
+||||+||.++++.+.++++++||.++.++.++++..++........ .+.... .+. .........++|+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~ 79 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTR-NALEEMLEEGVDL 79 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEE-ECCHHHHCCCSSE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccc-hhhhhhcccCCCE
Confidence 69999999999999999999999997558999999887765432100 000000 000 0112234688999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccC
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIED 415 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~ 415 (579)
||++|||||+|+++|.+.+.++||+|||+|++|||++++++++.++|+++++|+|.+++|+||++.+.+.+.. ....
T Consensus 80 ii~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~~---~~~~ 156 (285)
T PF01513_consen 80 IIVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEYSIEERMRLEVSVDRKKGA---EIAL 156 (285)
T ss_dssp EEEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHCEEEEEEEEEEEEEETTE----CEEE
T ss_pred EEEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCeEEEEeeeEEEEEecCCcc---ceee
Confidence 9999999999999999998899999999999999999999999999999999999999999999999876430 1234
Q ss_pred cceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCe
Q 008048 416 PILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPL 495 (579)
Q Consensus 416 ~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPl 495 (579)
.++||||++|.++..++++.+++++||+++.+++|||||||||||||||++||||||++|.+++|++||||||+++.||+
T Consensus 157 ~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tpi~p~~~~~rpi 236 (285)
T PF01513_consen 157 IDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTPICPHSLSNRPI 236 (285)
T ss_dssp EEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEEESESSTT-S-E
T ss_pred eeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEeccccccCCceE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeee
Q 008048 496 ILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTAC 546 (579)
Q Consensus 496 Vlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~ 546 (579)
|+|++++|+|++. +.++.+++||+....+.+||+|.|+++++++++|+
T Consensus 237 Vl~~~~~i~i~~~---~~~~~~~~DG~~~~~~~~~d~i~i~~s~~~~~~ir 284 (285)
T PF01513_consen 237 VLPDDSEIEIKVE---RREAVLAIDGQREIELKPGDEIRIRKSPKPVKLIR 284 (285)
T ss_dssp EEETTSEEEEEEE---SCEEEEEETTTEEEEECTTEEEEEEEECCEEEEEE
T ss_pred EECCCCEEEEEEe---CCCEEEEEECCceEEeCCCcEEEEEEcCCccEEEe
Confidence 9999999999986 45799999999999999999999999999999875
No 23
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=2.6e-54 Score=432.97 Aligned_cols=214 Identities=21% Similarity=0.310 Sum_probs=183.2
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcC-CCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccc
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTP-FHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKN 409 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~-~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~ 409 (579)
.++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+.+ +.|++ ++. ..++.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~~--~~l~~-~~~--~~~~~- 97 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTVL--HPLRM-TAT--DVSGE- 97 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCcE--EEEEE-EEE--ECCCc-
Confidence 358999999999999999999988999999999999999996 899999999999987743 44444 333 22111
Q ss_pred cccccCcceeeEeEEeccCCCcceeeeEEEeCCee-eEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCC
Q 008048 410 EIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSF-VTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPH 488 (579)
Q Consensus 410 ~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~-v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPH 488 (579)
....+||||++|.++. .+++.++++|||++ +.+|+|||||||||||||||+||||||||+|++++|++||||||
T Consensus 98 ----~~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~ 172 (246)
T PRK04761 98 ----VHEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISPF 172 (246)
T ss_pred ----EeeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeeccc
Confidence 1346899999999987 67999999999996 99999999999999999999999999999999999999999999
Q ss_pred CCC-CCCeeeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCc-eeeeeecCCCCChHHHHHh
Q 008048 489 SLS-FRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWP-VPTACQVDSTDDFFRSIHD 560 (579)
Q Consensus 489 sLs-~RPlVlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~-v~lv~l~~~~~dff~~LRe 560 (579)
++. +||+|+|++++|+|++....+.++.+++||+... .+|+|.|++++.. +.++. ..+++||+.|-.
T Consensus 173 ~~~~~RplVlp~~~~I~i~~~~~~~~~~~l~~DG~~~~---~~~~v~I~~s~~~~~~l~~--~~~~~~~~~~~~ 241 (246)
T PRK04761 173 RPRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEVR---DVVEVTIREDKDITVTLLF--DPGHSLEERILA 241 (246)
T ss_pred CCcCCccEEECCCCEEEEEEecCCCCcEEEEEcCCCcc---cCcEEEEEEcCCccEEEEE--CCCCCHHHHHHH
Confidence 986 8999999999999988644434688999998864 4899999999987 76653 578889988743
No 24
>PLN02929 NADH kinase
Probab=100.00 E-value=6.9e-54 Score=440.18 Aligned_cols=234 Identities=24% Similarity=0.289 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCC
Q 008048 278 VQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVP 357 (579)
Q Consensus 278 ~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~ 357 (579)
-...+..+.+||++ .|+++..... .+ +.....++|+||+||||||||+|+|.+ ...+
T Consensus 32 h~~~~~~~~~~L~~-~gi~~~~v~r--~~-------------------~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~i 88 (301)
T PLN02929 32 HKDTVNFCKDILQQ-KSVDWECVLR--NE-------------------LSQPIRDVDLVVAVGGDGTLLQASHFL-DDSI 88 (301)
T ss_pred hHHHHHHHHHHHHH-cCCEEEEeec--cc-------------------cccccCCCCEEEEECCcHHHHHHHHHc-CCCC
Confidence 34567788889986 5777632210 00 012235689999999999999999999 8889
Q ss_pred cEEEEcCC------------------CCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCccee
Q 008048 358 PIVPFSLG------------------SLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILV 419 (579)
Q Consensus 358 PILGINlG------------------~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~A 419 (579)
||+|||+| ++|||++++++++++.|+++++|+|.+++|+||++++... . ...+|
T Consensus 89 PvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~~~r~~L~~~v~g~--~------~~~~A 160 (301)
T PLN02929 89 PVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKPTELSRISTVVNGT--L------LETPA 160 (301)
T ss_pred cEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceEEEeeeEEEEecCC--c------ccceE
Confidence 99999999 7999999999999999999999999999999999998321 1 22389
Q ss_pred eEeEEeccCCCcceeeeEEEeC-----CeeeEEEeeceEEEcCCCChHHHHhhcCC---CCCCCCCCeEEEEEcCCCCCC
Q 008048 420 LNEVTIDRGISSYLTNLECYCD-----NSFVTCVQGDGLILSTTSGSTAYSLAAGG---SMVHPQVPGILFTPICPHSLS 491 (579)
Q Consensus 420 LNDVvI~rg~~s~mi~leV~ID-----ge~v~~~rgDGLIVSTPTGSTAYsLSAGG---PIV~P~v~aiviTPIcPHsLs 491 (579)
||||+|.++.++++++++++|| |+++.+++|||||||||||||||+||||| ||++|++++|++||||||+ +
T Consensus 161 LNEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltPI~Ph~-~ 239 (301)
T PLN02929 161 LNDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGH-P 239 (301)
T ss_pred eeEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEeeCCCC-C
Confidence 9999999999999999999999 88999999999999999999999999999 8899999999999999999 9
Q ss_pred CCCe---eeCCCCEEEEEeecCCCCCEEEEEeC-CcccccCCCCEEEEEecCCceeeee
Q 008048 492 FRPL---ILPEHVTLRVQIPFNSRSPAWASFDG-KDRKQLAPGDALVCSMAPWPVPTAC 546 (579)
Q Consensus 492 ~RPl---Vlp~~~~I~I~v~~~sr~~a~vsiDG-q~~~~L~~GD~I~I~~S~~~v~lv~ 546 (579)
.||+ |++++++|+|++. + ..+.+++|| +....|.+||+|.|++++.+++++.
T Consensus 240 ~r~l~~~vv~~~~~i~i~~~--~-~~~~i~iDG~~~~~~l~~gd~i~I~~s~~~l~l~~ 295 (301)
T PLN02929 240 PKSLMHGFYKPGQHMQVRWN--S-RKGTIYIDGSHVMHSIKLGDTIEISSDAPPLKVFL 295 (301)
T ss_pred CCCccccEECCCCeEEEEEe--C-CCEEEEECCCcceEecCCCCEEEEEECCCeEEEEE
Confidence 9999 9999999999873 2 468999999 5667899999999999999999874
No 25
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.84 E-value=9.6e-21 Score=194.74 Aligned_cols=210 Identities=26% Similarity=0.358 Sum_probs=149.6
Q ss_pred CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC---CCCccCcC--CCcchHHHHHHHHHcCCceEEEEeeEEEEEee
Q 008048 330 HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL---GSLGFMTP--FHSEHYKDYLDSVLRGPISITLRNRLQCHVIR 404 (579)
Q Consensus 330 ~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl---G~LGFLt~--~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r 404 (579)
...+|+||++|||||||.||+.+.+..+||+|||. |+-|.|+= -.+++...+|.++..|+|++..|.|+..++..
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~wv~r~rir~tv~g 182 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEWVLRQRIRGTVVG 182 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHHhhhheeEEEEec
Confidence 57799999999999999999988888899999998 67776543 33488999999999999999999999999986
Q ss_pred cccccc-------------------------------ccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceE
Q 008048 405 DAAKNE-------------------------------IEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGL 453 (579)
Q Consensus 405 ~~~~~~-------------------------------~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGL 453 (579)
+++... ....-++.|||||+|...-++++++|++.||+.....+++.|+
T Consensus 183 ~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~KqKssgl 262 (395)
T KOG4180|consen 183 DDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQKSSGL 262 (395)
T ss_pred CCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccccCCCe
Confidence 432100 0012345699999999999999999999999999999999999
Q ss_pred EEcCCCChHHHHhhc--------CC---CCCCCCCC------------------eEEEEEcCCCC-CCCC-Ce---eeCC
Q 008048 454 ILSTTSGSTAYSLAA--------GG---SMVHPQVP------------------GILFTPICPHS-LSFR-PL---ILPE 499 (579)
Q Consensus 454 IVSTPTGSTAYsLSA--------GG---PIV~P~v~------------------aiviTPIcPHs-Ls~R-Pl---Vlp~ 499 (579)
+|||.||||+|+++. |+ ++..-+.. .+++.|=-|.. .+.| || +.|.
T Consensus 263 ~vctgTGstsw~~~iNria~q~v~d~l~~l~~~~~~~vp~~Re~ve~i~~~~nq~llF~PD~p~l~fSiRepi~n~~~~s 342 (395)
T KOG4180|consen 263 VVCTGTGSTSWTFNINRIAEQAVGDLLMILLSRDNLQVPFMRELVEEISTAYNQHLLFKPDRPQLAFSIREPIFNATWPS 342 (395)
T ss_pred eEecCCCcceEeecccHHHHHHHHHHHHHHHhcCcccchhhhhhhHHHHHHhhhcCccCCCCcchhhhhhhhhhccccCC
Confidence 999999999998864 22 11111111 11111222211 1223 21 2332
Q ss_pred C----CEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCC
Q 008048 500 H----VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPW 540 (579)
Q Consensus 500 ~----~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~ 540 (579)
+ ..=+|.+.... -++.+++||...+++..|....+...+.
T Consensus 343 ~~~R~f~~kI~iksrC-~da~lVidG~is~~fndga~a~mev~~e 386 (395)
T KOG4180|consen 343 TDPRGFADKICIKSRC-QDAHLVIDGGISIPFNDGALAVMEVHPE 386 (395)
T ss_pred CcccccceeEEEecce-eeeeEEEecceEeecCcchhheeeecch
Confidence 2 22234442211 3588999998889999998777766654
No 26
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.22 E-value=2.5e-09 Score=108.81 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCEEEEEEcC--CChhHHHHHHHHHHHHHhcCCeEEEEccchhH-hhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 264 PQTVVILTKP--NSNSVQILCAQMVRWLREQKKLNIYVEPRVRA-ELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp--~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~-~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
|++++||.|| .+....+...++.++|.+ .++++.+...... +.. ..........+|+||++|
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~--------------~~~~~~~~~~~d~ivv~G 65 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAA--------------RYVEEARKFGVDTVIAGG 65 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHH--------------HHHHHHHhcCCCEEEEEC
Confidence 4799999999 665667788899999976 4676654322111 000 000011234689999999
Q ss_pred CchHHHHHHHhcCC-CCCcEEE-EcCCCCccCcC-CC-cchHHHHHHHHHcCCce
Q 008048 341 GDGTVLWAASIFKG-PVPPIVP-FSLGSLGFMTP-FH-SEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 341 GDGTlL~AAr~~~~-~~~PILG-INlG~LGFLt~-~~-~edi~~~L~~il~G~y~ 391 (579)
||||+..+++.+.. ...|.+| |+.|+.++|+. +. ++++.++++.+.+|...
T Consensus 66 GDGTl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~~ 120 (293)
T TIGR00147 66 GDGTINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDAR 120 (293)
T ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCce
Confidence 99999999988765 3456677 99999999998 76 78899999999998753
No 27
>PRK13057 putative lipid kinase; Reviewed
Probab=98.45 E-value=2.3e-05 Score=80.23 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=73.8
Q ss_pred EEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHH
Q 008048 269 ILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWA 348 (579)
Q Consensus 269 IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~A 348 (579)
||.||..-.......++.++|.+ .++++.+.......-. .....+...++|+||++|||||+-.+
T Consensus 2 ~I~Np~sg~~~~~~~~i~~~l~~-~g~~~~~~~t~~~~~a--------------~~~~~~~~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 2 LLVNRHARSGRAALAAARAALEA-AGLELVEPPAEDPDDL--------------SEVIEAYADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred EEECCCCCCcchhHHHHHHHHHH-cCCeEEEEecCCHHHH--------------HHHHHHHHcCCCEEEEECchHHHHHH
Confidence 56777654334567889999975 5676554321100000 00111234568999999999999999
Q ss_pred HHhcCCCCCcEEEEcCCCCccCcCC--CcchHHHHHHHHHcCCce
Q 008048 349 ASIFKGPVPPIVPFSLGSLGFMTPF--HSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 349 Ar~~~~~~~PILGINlG~LGFLt~~--~~edi~~~L~~il~G~y~ 391 (579)
+..+...++|+.-|.+|+-.-++.. -+.++.++++.+..|...
T Consensus 67 ~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~ 111 (287)
T PRK13057 67 APALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQVR 111 (287)
T ss_pred HHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCeE
Confidence 9888888899999999987766552 256789999999988643
No 28
>PRK00861 putative lipid kinase; Reviewed
Probab=98.22 E-value=0.00089 Score=68.94 Aligned_cols=111 Identities=17% Similarity=0.305 Sum_probs=72.5
Q ss_pred CCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEEccch--hHhhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 008048 264 PQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYVEPRV--RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 339 (579)
Q Consensus 264 pk~V~IV~Kp~~--~~~~~l~~eii~~L~e~~gi~V~ve~~v--a~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL 339 (579)
+++++||.||.. -.......++.+.|.+...++++.-..- +.++ ..+....++|+||++
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~-----------------a~~~~~~~~d~vv~~ 64 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQL-----------------AQEAIERGAELIIAS 64 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHH-----------------HHHHHhcCCCEEEEE
Confidence 468999999874 3334456778888864222333332110 1100 011123567999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEcCCCCccCc-CCC-cchHHHHHHHHHcCCce
Q 008048 340 GGDGTVLWAASIFKGPVPPIVPFSLGSLGFMT-PFH-SEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 340 GGDGTlL~AAr~~~~~~~PILGINlG~LGFLt-~~~-~edi~~~L~~il~G~y~ 391 (579)
|||||+=.++..+.+.++|+.=|..|+-.-++ .+. +.++.++++.+..|...
T Consensus 65 GGDGTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~ 118 (300)
T PRK00861 65 GGDGTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTR 118 (300)
T ss_pred CChHHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcE
Confidence 99999999999888888887778888754322 233 45788999999998753
No 29
>PRK12361 hypothetical protein; Provisional
Probab=98.12 E-value=0.00074 Score=75.46 Aligned_cols=240 Identities=18% Similarity=0.161 Sum_probs=131.3
Q ss_pred CCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEEccc--hhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 008048 264 PQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYVEPR--VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 339 (579)
Q Consensus 264 pk~V~IV~Kp~~--~~~~~l~~eii~~L~e~~gi~V~ve~~--va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL 339 (579)
.+++.||.||.. -.......++.+.|.+.-.++++.-.. .+..+ ..+....++|+||++
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~l-----------------a~~~~~~~~d~Viv~ 304 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEAL-----------------AKQARKAGADIVIAC 304 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHH-----------------HHHHHhcCCCEEEEE
Confidence 468999999864 335567788888887532223322110 00000 001123567999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEcCCCCccCcC-C---Cc--chHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccc
Q 008048 340 GGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTP-F---HS--EHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEI 413 (579)
Q Consensus 340 GGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~-~---~~--edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~ 413 (579)
|||||+=.++..+.+.++|+-=|.+|+-.-++- + .. .+..++++.+.+|...--....+.
T Consensus 305 GGDGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn-------------- 370 (547)
T PRK12361 305 GGDGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCN-------------- 370 (547)
T ss_pred CCCcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEc--------------
Confidence 999999999988888888877778887553222 2 21 478889999998865322211110
Q ss_pred cCcceeeEeEEecc----------------CCC------------cceeeeEEEeCCeeeEEEeeceEEEcCCCChHHH-
Q 008048 414 EDPILVLNEVTIDR----------------GIS------------SYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAY- 464 (579)
Q Consensus 414 ~~~~~ALNDVvI~r----------------g~~------------s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAY- 464 (579)
..+.+|=+.+.- |.. .+...+.+.+||+.......--++|+- |+.-+
T Consensus 371 --~~~fln~agiG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~~~~~~~~~~l~v~N--~~~~~~ 446 (547)
T PRK12361 371 --DRLMLLLVGIGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDAEPQTISTHSLVVAN--AAPFTS 446 (547)
T ss_pred --CeEEEEEEeechhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCCCceEEEEEEEEEEc--CCCccc
Confidence 112333332210 000 122457788899865555666666654 21100
Q ss_pred HhhcCCCCCCCC---CCeEEEEEcCCC---CCCC-------------CC-eeeCCCCEEEEEeecCCCCCEEEEEeCCcc
Q 008048 465 SLAAGGSMVHPQ---VPGILFTPICPH---SLSF-------------RP-LILPEHVTLRVQIPFNSRSPAWASFDGKDR 524 (579)
Q Consensus 465 sLSAGGPIV~P~---v~aiviTPIcPH---sLs~-------------RP-lVlp~~~~I~I~v~~~sr~~a~vsiDGq~~ 524 (579)
.+.-||+.-.|+ ++.+++.|..+. .++. .| +..-...+|+|+. ..+..+.+||...
T Consensus 447 ~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~----~~~~~~~iDGE~~ 522 (547)
T PRK12361 447 LLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISS----QKPIKYVIDGELF 522 (547)
T ss_pred ccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEe----CCceEEEECCccC
Confidence 123355543333 334444443220 0100 11 1111223444442 2356788999875
Q ss_pred cccCCCCEEEEEecCCceeeee
Q 008048 525 KQLAPGDALVCSMAPWPVPTAC 546 (579)
Q Consensus 525 ~~L~~GD~I~I~~S~~~v~lv~ 546 (579)
. .+.++|+..+..++++.
T Consensus 523 ~----~~p~~i~v~p~al~vlv 540 (547)
T PRK12361 523 E----DEDLTIEVQPASLKVFV 540 (547)
T ss_pred C----ceEEEEEEecCceEEEe
Confidence 3 36799999999999764
No 30
>PRK13059 putative lipid kinase; Reviewed
Probab=97.98 E-value=0.0028 Score=65.52 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=71.3
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 264 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~--~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
++++.||.||..- ...+...++.++|.+ .++++.+ ........ ....+.....+|.||++|
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~d~vi~~G 64 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDL---------------KNAFKDIDESYKYILIAG 64 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchH---------------HHHHHHhhcCCCEEEEEC
Confidence 3689999998643 334566788888876 4665432 11100000 011122235689999999
Q ss_pred CchHHHHHHHhcC--CCCCcEEEEcCCCCccCcC-CC-cchHHHHHHHHHcCCce
Q 008048 341 GDGTVLWAASIFK--GPVPPIVPFSLGSLGFMTP-FH-SEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 341 GDGTlL~AAr~~~--~~~~PILGINlG~LGFLt~-~~-~edi~~~L~~il~G~y~ 391 (579)
||||+=.++..+. +..+|+-=|.+|+-.-++. +. +.+..++++.++.|...
T Consensus 65 GDGTv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~ 119 (295)
T PRK13059 65 GDGTVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPK 119 (295)
T ss_pred CccHHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcE
Confidence 9999888887776 3457766678887543332 22 56788999999988743
No 31
>PRK13055 putative lipid kinase; Reviewed
Probab=97.93 E-value=0.0028 Score=66.71 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEE--EEcc-c--hhHhhhhcCCcccccccccchHHHhhhCCCccEE
Q 008048 264 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNI--YVEP-R--VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLV 336 (579)
Q Consensus 264 pk~V~IV~Kp~~~--~~~~l~~eii~~L~e~~gi~V--~ve~-~--va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLV 336 (579)
+++++||.||..- .......++.+.|.+ .++++ +... . .+..+.. .....++|+|
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~-----------------~~~~~~~d~v 63 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK-----------------RAAEAGFDLI 63 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH-----------------HHhhcCCCEE
Confidence 4789999998643 345667888888876 45543 3221 1 1111110 1112457999
Q ss_pred EEEeCchHHHHHHHhcCC--CCCcEEEEcCCCCccCc-CCC-cc-hHHHHHHHHHcCCce
Q 008048 337 VTLGGDGTVLWAASIFKG--PVPPIVPFSLGSLGFMT-PFH-SE-HYKDYLDSVLRGPIS 391 (579)
Q Consensus 337 IvLGGDGTlL~AAr~~~~--~~~PILGINlG~LGFLt-~~~-~e-di~~~L~~il~G~y~ 391 (579)
|++|||||+=.++..+.. ..+|+-=|.+|+-.-++ .+. +. +..++++.+..|...
T Consensus 64 vv~GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~ 123 (334)
T PRK13055 64 IAAGGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTI 123 (334)
T ss_pred EEECCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcE
Confidence 999999999888877764 34565557888744322 222 34 688889999988654
No 32
>PRK13337 putative lipid kinase; Reviewed
Probab=97.92 E-value=0.0016 Score=67.37 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 008048 264 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~--~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLG 340 (579)
+++++||.+|..- .......++.+.|.+ .++++-+-..... +.. ..-.. .....+|+||++|
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~-----~~a---------~~~a~~~~~~~~d~vvv~G 65 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGP-----GDA---------TLAAERAVERKFDLVIAAG 65 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCC-----CCH---------HHHHHHHHhcCCCEEEEEc
Confidence 4689999998743 334556788888876 4665432111000 000 00011 1124579999999
Q ss_pred CchHHHHHHHhcCC--CCCcEEEEcCCCCccCcC-CC-cchHHHHHHHHHcCCc
Q 008048 341 GDGTVLWAASIFKG--PVPPIVPFSLGSLGFMTP-FH-SEHYKDYLDSVLRGPI 390 (579)
Q Consensus 341 GDGTlL~AAr~~~~--~~~PILGINlG~LGFLt~-~~-~edi~~~L~~il~G~y 390 (579)
||||+=.++..+.. ..+|+.=|..|+-.-++. +. +.++.++++.+.+|..
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~ 119 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHT 119 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCe
Confidence 99998888876553 345666677787553332 22 4578889999988865
No 33
>PRK11914 diacylglycerol kinase; Reviewed
Probab=97.78 E-value=0.00044 Score=71.37 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEEc-cchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 264 PQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYVE-PRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~--~~~~~l~~eii~~L~e~~gi~V~ve-~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
|++++||.||.. -.......++.+.|++ .++++.+- .....+.. ..........+|+||++|
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~~~--------------~~a~~~~~~~~d~vvv~G 72 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHDAR--------------HLVAAALAKGTDALVVVG 72 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHHHH--------------HHHHHHHhcCCCEEEEEC
Confidence 689999999974 4456778889999975 46654321 11111100 000011235679999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCCCCccCc-CCC-c-chHHHHHHHHHcCCce
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMT-PFH-S-EHYKDYLDSVLRGPIS 391 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG~LGFLt-~~~-~-edi~~~L~~il~G~y~ 391 (579)
||||+=.++..+.+.++|+.=|..|+-.=++ .+. + ++..++++.+.+|...
T Consensus 73 GDGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~~ 126 (306)
T PRK11914 73 GDGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTE 126 (306)
T ss_pred CchHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCce
Confidence 9999999998888888888778888765333 333 2 4788999999998764
No 34
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.78 E-value=0.00015 Score=76.98 Aligned_cols=69 Identities=26% Similarity=0.391 Sum_probs=60.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCc--CCCcchHHHHHHHHHcCCceEEEEeeEEE
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMT--PFHSEHYKDYLDSVLRGPISITLRNRLQC 400 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt--~~~~edi~~~L~~il~G~y~Ie~R~rL~v 400 (579)
..+|+|+.+|||||.=-++..+ +.++|||||..|.--|.- .++|++....+..+++|++++++|.....
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r~~~r~V~di 169 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNARLENREVVDI 169 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhcccccccccccccc
Confidence 3799999999999998888877 788999999999877764 67899999999999999999998877654
No 35
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=97.43 E-value=0.084 Score=55.33 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCEEEEEEcCC--ChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPN--SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~--~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
++++.++++|. +........++.+.|+++ +.++.+-..... +... +.-.+.....+|.||+.||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~~t~~~-----g~a~--------~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVRVTEEA-----GDAI--------EIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEEEeecC-----ccHH--------HHHHHHHhcCCCEEEEecC
Confidence 57889999885 457788899999999865 443322111000 0000 0000112347999999999
Q ss_pred chHHHHHHHhcCCCCCcEEE-EcCCCCccCc---CCCcchHHHHHHHHHcCCce
Q 008048 342 DGTVLWAASIFKGPVPPIVP-FSLGSLGFMT---PFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILG-INlG~LGFLt---~~~~edi~~~L~~il~G~y~ 391 (579)
|||+=.++--+.+.+.|.|| |.+|+-.=++ .++.+++.++++.+.+|.-+
T Consensus 68 DGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~ 121 (301)
T COG1597 68 DGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGETR 121 (301)
T ss_pred cchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeE
Confidence 99999999888877777344 4566644332 23444699999999998654
No 36
>PRK13054 lipid kinase; Reviewed
Probab=97.28 E-value=0.0026 Score=65.69 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=70.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
.|++++||.|+... ......++.+.|.+ .++++-+...... . ... ..-......++|.||++|||
T Consensus 2 ~~~~~~~i~N~~~~-~~~~~~~~~~~l~~-~g~~~~v~~t~~~-----~-~a~-------~~a~~~~~~~~d~vvv~GGD 66 (300)
T PRK13054 2 TFPKSLLILNGKSA-GNEELREAVGLLRE-EGHTLHVRVTWEK-----G-DAA-------RYVEEALALGVATVIAGGGD 66 (300)
T ss_pred CCceEEEEECCCcc-chHHHHHHHHHHHH-cCCEEEEEEecCC-----C-cHH-------HHHHHHHHcCCCEEEEECCc
Confidence 36899999997754 34566778888875 4666443211100 0 000 00001123568999999999
Q ss_pred hHHHHHHHhcCC----CCCcEEEEcCCCCccCc-CCC-cchHHHHHHHHHcCCce
Q 008048 343 GTVLWAASIFKG----PVPPIVPFSLGSLGFMT-PFH-SEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 343 GTlL~AAr~~~~----~~~PILGINlG~LGFLt-~~~-~edi~~~L~~il~G~y~ 391 (579)
||+=.++..+.+ ..+|+.=|..|+-.-++ .+. +.++.++++.+.+|...
T Consensus 67 GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~ 121 (300)
T PRK13054 67 GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQ 121 (300)
T ss_pred cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCce
Confidence 999888877653 24576667777644222 222 45788899999888653
No 37
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=97.10 E-value=0.0027 Score=57.58 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=50.8
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+++||.+|..-......+++.+.|... +..+-+-....... ... ...........|.||++|||||+
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~-~~~~~~~~t~~~~~---------~~~---~~~~~~~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAA-GIDYEVIETESAGH---------AEA---LARILALDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHT-TCEEEEEEESSTTH---------HHH---HHHHHHHTTS-SEEEEEESHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHc-CCceEEEEEeccch---------HHH---HHHHHhhccCccEEEEEcCccHH
Confidence 478888885433222247888888764 33322211100000 000 00111222335999999999999
Q ss_pred HHHHHhcCCCCC----cEEEEcCCCCc
Q 008048 346 LWAASIFKGPVP----PIVPFSLGSLG 368 (579)
Q Consensus 346 L~AAr~~~~~~~----PILGINlG~LG 368 (579)
=.++..+..... |+.=|.+|+-.
T Consensus 68 ~~vv~~l~~~~~~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 68 NEVVNGLMGSDREDKPPLGIIPAGTGN 94 (130)
T ss_dssp HHHHHHHCTSTSSS--EEEEEE-SSS-
T ss_pred HHHHHHHhhcCCCccceEEEecCCChh
Confidence 999998887665 88888888754
No 38
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=96.80 E-value=0.0093 Score=61.42 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=65.5
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
++++|.|+... ......++.+.|.+ .++++-+...... ... . ....+....++|.||++|||||+
T Consensus 1 ~~~~I~N~~~~-~~~~~~~~~~~l~~-~g~~~~v~~t~~~-----~~a----~----~~a~~~~~~~~d~vv~~GGDGTi 65 (293)
T TIGR03702 1 KALLILNGKQA-DNEDVREAVGDLRD-EGIQLHVRVTWEK-----GDA----Q----RYVAEALALGVSTVIAGGGDGTL 65 (293)
T ss_pred CEEEEEeCCcc-chhHHHHHHHHHHH-CCCeEEEEEecCC-----CCH----H----HHHHHHHHcCCCEEEEEcCChHH
Confidence 46778887644 33456678888875 4666433211000 000 0 00001113557999999999998
Q ss_pred HHHHHhcCC----CCCcEEEEcCCCCc-cCcCCC-cchHHHHHHHHHcCCce
Q 008048 346 LWAASIFKG----PVPPIVPFSLGSLG-FMTPFH-SEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 346 L~AAr~~~~----~~~PILGINlG~LG-FLt~~~-~edi~~~L~~il~G~y~ 391 (579)
=.++.-+.. ..+|+.=|.+|+-. |--.+. +.+..++++.++.|...
T Consensus 66 ~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~~ 117 (293)
T TIGR03702 66 REVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGAAQ 117 (293)
T ss_pred HHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCce
Confidence 888876642 23456557777654 333333 56788899999988653
No 39
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=96.65 E-value=0.023 Score=63.31 Aligned_cols=116 Identities=15% Similarity=0.228 Sum_probs=71.8
Q ss_pred eecCCCCCEEEEEEcCC--ChhHHHHHH-HHHHHHHhcCCeEEEEccch----hHhhhhcCCcccccccccchHHHhhhC
Q 008048 258 LKWESPPQTVVILTKPN--SNSVQILCA-QMVRWLREQKKLNIYVEPRV----RAELLTESSYFSFVQTWKDEKEILLLH 330 (579)
Q Consensus 258 l~W~~~pk~V~IV~Kp~--~~~~~~l~~-eii~~L~e~~gi~V~ve~~v----a~~l~~~~~~~~~i~~~~~~~~~~~l~ 330 (579)
+++...|++++||.||. +-.+..... ++...|++ .++++-+-... +.++. .+. ..
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la---------------~~~--~~ 166 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVV---------------RTM--DL 166 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHH---------------HHh--hh
Confidence 44556799999999985 444455544 46668865 56664432211 11110 011 13
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCC-------CCcEEEEcCCCCc-cCcCC-----CcchHHHHHHHHHcCCce
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGP-------VPPIVPFSLGSLG-FMTPF-----HSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~-------~~PILGINlG~LG-FLt~~-----~~edi~~~L~~il~G~y~ 391 (579)
.++|.||++||||||=.++.-+... .+|+-=|..|+-. |-..+ .+.+..+++..|+.|...
T Consensus 167 ~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~ 240 (481)
T PLN02958 167 SKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKC 240 (481)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCce
Confidence 5689999999999988887766432 4676667777643 32222 245678888889998754
No 40
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=96.20 E-value=0.02 Score=52.13 Aligned_cols=36 Identities=39% Similarity=0.727 Sum_probs=29.2
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCC-----CcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPV-----PPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~-----~PILGINlG~ 366 (579)
..+|.||++|||||+=.++..+.... +|+.=|.+|+
T Consensus 48 ~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 48 PKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CcCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 35789999999999999888776444 7888888886
No 41
>PLN02204 diacylglycerol kinase
Probab=95.48 E-value=0.16 Score=58.17 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=45.0
Q ss_pred CCCCEEEEEEcCC--ChhHHHHHHHHHHHHHhcCCeEE--EEccch--hHhhhhcCCcccccccccchHHHhh-hCCCcc
Q 008048 262 SPPQTVVILTKPN--SNSVQILCAQMVRWLREQKKLNI--YVEPRV--RAELLTESSYFSFVQTWKDEKEILL-LHTKVD 334 (579)
Q Consensus 262 ~~pk~V~IV~Kp~--~~~~~~l~~eii~~L~e~~gi~V--~ve~~v--a~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~D 334 (579)
..|++++||.+|. +-.......++...|.. .++++ ++-... +.++. ..+.+ ....+|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~aghA~d~~---------------~~~~~~~l~~~D 220 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAGHAFDVM---------------ASISNKELKSYD 220 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcchHHHHH---------------HHHhhhhccCCC
Confidence 5589999999984 44556667788888875 45553 332211 11110 01111 145689
Q ss_pred EEEEEeCchHHHHHHH
Q 008048 335 LVVTLGGDGTVLWAAS 350 (579)
Q Consensus 335 LVIvLGGDGTlL~AAr 350 (579)
.||++||||||=.++.
T Consensus 221 ~VVaVGGDGt~nEVlN 236 (601)
T PLN02204 221 GVIAVGGDGFFNEILN 236 (601)
T ss_pred EEEEEcCccHHHHHHH
Confidence 9999999999765554
No 42
>PLN02884 6-phosphofructokinase
Probab=93.15 E-value=0.72 Score=50.83 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=80.3
Q ss_pred ccCcceEeeecCCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCe-EEEEccchhHhhhhcCC-c-------------
Q 008048 250 ERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKL-NIYVEPRVRAELLTESS-Y------------- 313 (579)
Q Consensus 250 ~~s~k~~~l~W~~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi-~V~ve~~va~~l~~~~~-~------------- 313 (579)
+|+..+-.+-++.+..+|+|++-- +.|-.-...+.+++.+.. .++ +||--.+=.+.+..... .
T Consensus 39 ~~agpr~~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~ 117 (411)
T PLN02884 39 HRAGPRKKIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHL 117 (411)
T ss_pred hhcCCceeEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHh
Confidence 466666677888889999999975 557777777888888764 466 57632211111211110 0
Q ss_pred --ccccccc--c-chHHHhh-h-CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCc
Q 008048 314 --FSFVQTW--K-DEKEILL-L-HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMT 371 (579)
Q Consensus 314 --~~~i~~~--~-~~~~~~~-l-~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt 371 (579)
-+.+.+- . ....+.+ + ..++|.+|+||||||+-.|.++.. +..+||+||.- -++||-|
T Consensus 118 ~GGt~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdT 197 (411)
T PLN02884 118 SGGSLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDT 197 (411)
T ss_pred CCCceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHH
Confidence 0011110 0 0011111 1 257999999999999987766543 34599999953 2788877
Q ss_pred CCCcchHHHHHHHHH
Q 008048 372 PFHSEHYKDYLDSVL 386 (579)
Q Consensus 372 ~~~~edi~~~L~~il 386 (579)
.. +.+.++++++.
T Consensus 198 Av--~~~~~ai~~l~ 210 (411)
T PLN02884 198 AV--EEAQRAINSAY 210 (411)
T ss_pred HH--HHHHHHHHHHH
Confidence 65 34556666654
No 43
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=92.14 E-value=1.2 Score=49.72 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=77.9
Q ss_pred cCcceEeeecCCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCC-eEEEEccchhHhhhhc--CCcc------------
Q 008048 251 RSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTE--SSYF------------ 314 (579)
Q Consensus 251 ~s~k~~~l~W~~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~g-i~V~ve~~va~~l~~~--~~~~------------ 314 (579)
++..+-++-++....+|+|++-- ..|-.-...+.++..+..+.+ .+||--.+=...+... ....
T Consensus 67 ~agpr~~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~ 146 (443)
T PRK06830 67 KAGPREKIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHE 146 (443)
T ss_pred hcCCcceeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHh
Confidence 56666677777788999999875 456666667888888765434 5665432222222210 0000
Q ss_pred ---cccccc---cchHHHhhh--CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCc
Q 008048 315 ---SFVQTW---KDEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMT 371 (579)
Q Consensus 315 ---~~i~~~---~~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt 371 (579)
+.+.+- .+...+.+. ..++|.+|+||||||+-.|.+... +..+||+||.- =++||-|
T Consensus 147 ~GGTiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdT 226 (443)
T PRK06830 147 FGGTILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFET 226 (443)
T ss_pred CCCccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHH
Confidence 011110 000111111 257999999999999987776543 45689999953 3788877
Q ss_pred CCCcchHHHHHHHH
Q 008048 372 PFHSEHYKDYLDSV 385 (579)
Q Consensus 372 ~~~~edi~~~L~~i 385 (579)
.+ +.+.++++.+
T Consensus 227 Av--~~a~~aI~~~ 238 (443)
T PRK06830 227 AV--EKATEAIRCA 238 (443)
T ss_pred HH--HHHHHHHHHH
Confidence 65 3344555544
No 44
>PRK14071 6-phosphofructokinase; Provisional
Probab=91.94 E-value=0.19 Score=54.22 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=41.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHHc
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il~ 387 (579)
.++|.+|++|||||+-.+.++....++||+||.- -++||-|..+. +.++++++..
T Consensus 106 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 106 LGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred cCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 4799999999999987665554434899999953 48999887654 5667777755
No 45
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=90.96 E-value=0.23 Score=52.40 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=40.8
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------C---CCccCcCCCcchHHHHHHHHH
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~~il 386 (579)
.++|.+|++|||||+-.+.++....++||+||.. | ++||-|.. +.+.++++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~--~~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTAL--NTIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHH--HHHHHHHHHHH
Confidence 4689999999999998877765546799999964 3 78887764 34455666664
No 46
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=89.43 E-value=0.38 Score=51.14 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=39.6
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------C---CCccCcCCCcchHHHHHHHHHc
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~~il~ 387 (579)
.++|.+|++|||||+-.|.++. ..++||+||.- | ++||-|.. +.+.++++.+..
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~-e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~--~~~~~~i~~i~~ 154 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLT-EHGFPCVGLPGTIDNDIPGTDYTIGFDTAL--NTVVEAIDRIRD 154 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHH-HcCCCEEEecccccCCCCCCccCCCHHHHH--HHHHHHHHHHHH
Confidence 5799999999999988777654 35799999954 3 78988765 334455665543
No 47
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=89.27 E-value=0.39 Score=51.16 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=40.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------C---CCccCcCCCcchHHHHHHHHHc
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~~il~ 387 (579)
.++|.+|++|||||+-.+.++. ...+||+||.. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~-~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLA-DKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHH-hcCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 5789999999999997666554 35699999964 3 6888887644 5566666654
No 48
>PRK14072 6-phosphofructokinase; Provisional
Probab=89.12 E-value=0.39 Score=52.89 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHH
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSV 385 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~i 385 (579)
.++|.+|+||||||+-.|.++.. +..+||+||.- -++||-|.. +.+.++++++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~--~~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAA--KYIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHH--HHHHHHHHHH
Confidence 57999999999999987776543 45699999953 478887764 3344555555
No 49
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=89.08 E-value=0.42 Score=53.31 Aligned_cols=135 Identities=21% Similarity=0.200 Sum_probs=79.1
Q ss_pred ccCcceEeeecCCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCC--------------c
Q 008048 250 ERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESS--------------Y 313 (579)
Q Consensus 250 ~~s~k~~~l~W~~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~--------------~ 313 (579)
+|+..+-++-++....+|+||+-- ..|-.-...+.++..+... +..+||--..=...+..... .
T Consensus 73 ~~agpr~~~~f~p~~~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~G 152 (459)
T PTZ00286 73 LRAGPRKHLYFNPKEVKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLG 152 (459)
T ss_pred eecCCceeEEEcccccEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHhcCCCeEECCHHHhhhHHhCC
Confidence 366677778888889999999875 4566666778888888643 23455432221111111100 0
Q ss_pred ccccccc---cchHHHhhh--CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCcCC
Q 008048 314 FSFVQTW---KDEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPF 373 (579)
Q Consensus 314 ~~~i~~~---~~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt~~ 373 (579)
=+.+.+- .+...+.+. ..++|.+|+||||||+-.|.+... +..+||+||.- -++||-|.+
T Consensus 153 GTiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv 232 (459)
T PTZ00286 153 GTILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAV 232 (459)
T ss_pred CceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHH
Confidence 0011110 000111111 257999999999999988776543 45699999953 488888765
Q ss_pred CcchHHHHHHHHH
Q 008048 374 HSEHYKDYLDSVL 386 (579)
Q Consensus 374 ~~edi~~~L~~il 386 (579)
+.+.++++.+.
T Consensus 233 --~~~~~aI~~~~ 243 (459)
T PTZ00286 233 --EEAQNAIRAAY 243 (459)
T ss_pred --HHHHHHHHHHH
Confidence 33445555543
No 50
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=88.27 E-value=2.1 Score=47.31 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=47.0
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcC---CCCCcEEEEcCCC--Cc---cCcC-CC-cc---hHHHHHHHHHcCCceEEE
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFK---GPVPPIVPFSLGS--LG---FMTP-FH-SE---HYKDYLDSVLRGPISITL 394 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~---~~~~PILGINlG~--LG---FLt~-~~-~e---di~~~L~~il~G~y~Ie~ 394 (579)
.+....|.++|.|||||+=-++--+. +...||-=+..|. |+ -|.. |+ .+ .+-+++..+++++-.
T Consensus 112 ~~~t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~k--- 188 (535)
T KOG4435|consen 112 AVDTQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKK--- 188 (535)
T ss_pred HhccCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccccc---
Confidence 33445599999999999876553221 2345553333332 22 1222 21 22 234566677777532
Q ss_pred EeeEEEEEeeccccccccccCcceeeEeEEe
Q 008048 395 RNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 425 (579)
Q Consensus 395 R~rL~v~V~r~~~~~~~~~~~~~~ALNDVvI 425 (579)
+.+.-.|...+. ...+.++||++.-
T Consensus 189 -sv~~fdv~~~gs-----~l~P~fgl~glsw 213 (535)
T KOG4435|consen 189 -SVYAFDVTTEGS-----TLAPEFGLGGLSW 213 (535)
T ss_pred -ceEEEEeccCCC-----ccccccccCccch
Confidence 333333433332 2367789998843
No 51
>PLN02564 6-phosphofructokinase
Probab=87.14 E-value=0.6 Score=52.45 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=77.5
Q ss_pred ccCcceEeeecCCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcC--------------Cc
Q 008048 250 ERSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTES--------------SY 313 (579)
Q Consensus 250 ~~s~k~~~l~W~~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~--------------~~ 313 (579)
+|+..+-++-++....+|+|++-- +.|..-...+.++..+... +..+||--..=...+.... ..
T Consensus 73 ~~agpr~~i~f~p~~~riaIlTsGGd~PGmNavIRavv~~l~~~yg~~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~G 152 (484)
T PLN02564 73 RRAGPRQKVYFESDEVRACIVTCGGLCPGLNTVIREIVCGLSYMYGVTRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRG 152 (484)
T ss_pred eecCCcceEEEcCcceEEEEECCCCCCccHhHHHHHHHHHHHHhCCCeEEEEEccChHHhCCCCeEeCCHHHhhcHhhCC
Confidence 466677778888888999999875 4566666677777776533 2245543221111111000 00
Q ss_pred ccccccc---cchHHHhhh--CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCcCC
Q 008048 314 FSFVQTW---KDEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPF 373 (579)
Q Consensus 314 ~~~i~~~---~~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt~~ 373 (579)
=+++.+- .+...+.+. ..++|.+|+||||||+-.|.++.. +..++|+||.- -++||-|.+
T Consensus 153 GTiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv 232 (484)
T PLN02564 153 GTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAV 232 (484)
T ss_pred CceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHH
Confidence 0011110 000111111 247999999999999988876553 34456999954 378887765
Q ss_pred CcchHHHHHHHHH
Q 008048 374 HSEHYKDYLDSVL 386 (579)
Q Consensus 374 ~~edi~~~L~~il 386 (579)
+.+.++++++.
T Consensus 233 --~~~~~aI~~i~ 243 (484)
T PLN02564 233 --EEAQRAINAAH 243 (484)
T ss_pred --HHHHHHHHHHH
Confidence 34555666654
No 52
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=87.12 E-value=0.6 Score=50.41 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCC----------cc----ccc-----ccccch
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS----------YF----SFV-----QTWKDE 323 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~----------~~----~~i-----~~~~~~ 323 (579)
+++|+|++-- +.|-.-...+-+++.+... +++||--.+=...+..... .. +++ ..+...
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~-g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~~ 80 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE-GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTE 80 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc-CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcccH
Confidence 6789999875 4566666677788877754 7887642221111111100 00 000 011111
Q ss_pred HH----Hh-hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHH
Q 008048 324 KE----IL-LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 324 ~~----~~-~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il 386 (579)
+- .+ -...++|.+|++|||||.-.|+.+.....+|++||.- =++||.|.. +-+-++++++-
T Consensus 81 e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~--~~~~eaid~l~ 156 (347)
T COG0205 81 EGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTAL--ETAVEAIDNLR 156 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHH--HHHHHHHHHHH
Confidence 10 01 1135799999999999999988777655599999953 378998875 33556666665
No 53
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=87.03 E-value=1.5 Score=42.09 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH-----HHHHhcCCCC
Q 008048 282 CAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL-----WAASIFKGPV 356 (579)
Q Consensus 282 ~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL-----~AAr~~~~~~ 356 (579)
...+.++|++ .|+++.+-+.... ...+.+ ...+|.||+.||.|+.. ...+......
T Consensus 11 ~~~~~~~l~~-~G~~~~~~~~~~~-----------------~~~~~~-~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~ 71 (184)
T cd01743 11 TYNLVQYLRE-LGAEVVVVRNDEI-----------------TLEELE-LLNPDAIVISPGPGHPEDAGISLEIIRALAGK 71 (184)
T ss_pred HHHHHHHHHH-cCCceEEEeCCCC-----------------CHHHHh-hcCCCEEEECCCCCCcccchhHHHHHHHHhcC
Confidence 4567888876 5776655332100 111112 25699999999999853 2222222456
Q ss_pred CcEEEEcCCC
Q 008048 357 PPIVPFSLGS 366 (579)
Q Consensus 357 ~PILGINlG~ 366 (579)
+|||||-+|.
T Consensus 72 ~PvlGIC~G~ 81 (184)
T cd01743 72 VPILGVCLGH 81 (184)
T ss_pred CCEEEECHhH
Confidence 9999999996
No 54
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=86.73 E-value=0.58 Score=51.50 Aligned_cols=70 Identities=30% Similarity=0.333 Sum_probs=46.2
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHHcCCceEEEE
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVLRGPISITLR 395 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il~G~y~Ie~R 395 (579)
.++|.+|++|||||+-.|.++.. +.++||+||.- =++||-|.. +.+.++++++..-- .-..|
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~--~~~~~ai~~l~~ta-~s~~r 187 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAA--EQGARFFDNVINEH-SANPR 187 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHH--HHHHHHHHHHHHHH-HhcCC
Confidence 57999999999999988877643 45899999953 278887764 34556666665422 22224
Q ss_pred eeEEEEEe
Q 008048 396 NRLQCHVI 403 (579)
Q Consensus 396 ~rL~v~V~ 403 (579)
..+-+++.
T Consensus 188 ~~~vvEvM 195 (403)
T PRK06555 188 MLIIHEVM 195 (403)
T ss_pred EEEEEEcc
Confidence 44433554
No 55
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=86.15 E-value=2.6 Score=40.96 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=46.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch-
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG- 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG- 343 (579)
++|+||-+.+.- ...++++|++ .|.++.+-+.... + .++ ...+|.||+.||-|
T Consensus 2 ~~iliid~~dsf-----~~~i~~~l~~-~g~~~~v~~~~~~-----------------~--~~~-l~~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDSF-----TFNLVDLIRK-LGVPMQVVNVEDL-----------------D--LDE-VENFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCch-----HHHHHHHHHH-cCCcEEEEECCcc-----------------C--hhH-hccCCEEEECCCCCC
Confidence 578888886654 3448888876 4665554221000 0 011 24589999999998
Q ss_pred --H---HHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 --T---VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 --T---lL~AAr~~~~~~~PILGINlG~ 366 (579)
. ++...+.+ ...+|||||-+|.
T Consensus 56 ~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 56 PRAYPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hHHhhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 2 23333433 3578999999997
No 56
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=84.88 E-value=3.7 Score=41.04 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=49.2
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+++-+.+ .....+.+||.+ .|+.+.+-+..... ..+..+...++|.||+.||.|..
T Consensus 2 ~ilv~d~~~-----~~~~~~~~~l~~-~G~~~~~~~~~~~~----------------~~~~~~~~~~~dgliisGGp~~~ 59 (214)
T PRK07765 2 RILVVDNYD-----SFVFNLVQYLGQ-LGVEAEVWRNDDPR----------------LADEAAVAAQFDGVLLSPGPGTP 59 (214)
T ss_pred eEEEEECCC-----cHHHHHHHHHHH-cCCcEEEEECCCcC----------------HHHHHHhhcCCCEEEECCCCCCh
Confidence 577776654 234568889986 46766543221100 01122234569999999999765
Q ss_pred H------HHHHhcCCCCCcEEEEcCCC
Q 008048 346 L------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 346 L------~AAr~~~~~~~PILGINlG~ 366 (579)
- ...+.+....+|||||-+|.
T Consensus 60 ~~~~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 60 ERAGASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred hhcchHHHHHHHHHhCCCCEEEEccCH
Confidence 3 33444455679999999997
No 57
>PRK03202 6-phosphofructokinase; Provisional
Probab=84.57 E-value=1.1 Score=47.84 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=39.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------C---CCccCcCCCcchHHHHHHHHH
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~~il 386 (579)
.++|.+|++|||||+-.+.++. ..++||+||.- | ++||-|.. +.+-++++++.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~--~~~~~~i~~l~ 154 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTAL--NTAVEAIDRLR 154 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHH--HHHHHHHHHHH
Confidence 5789999999999998877765 46899999964 3 78887764 33445555553
No 58
>CHL00101 trpG anthranilate synthase component 2
Probab=83.74 E-value=3.3 Score=40.29 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=45.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL 346 (579)
|+||-+-+. .+..|+++|++ .|+.+.+-+.... +..++. ...+|.||+.||.|..-
T Consensus 2 iliid~~ds-----ft~~l~~~l~~-~g~~~~v~~~~~~----------------~~~~~~--~~~~dgiiisgGpg~~~ 57 (190)
T CHL00101 2 ILIIDNYDS-----FTYNLVQSLGE-LNSDVLVCRNDEI----------------DLSKIK--NLNIRHIIISPGPGHPR 57 (190)
T ss_pred EEEEECCCc-----hHHHHHHHHHh-cCCCEEEEECCCC----------------CHHHHh--hCCCCEEEECCCCCChH
Confidence 566666443 24668888876 4676665331100 001111 23589999999999863
Q ss_pred H------HHHhcCCCCCcEEEEcCCC
Q 008048 347 W------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 347 ~------AAr~~~~~~~PILGINlG~ 366 (579)
. ..+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~i~~~~-~~~~PiLGIClG~ 82 (190)
T CHL00101 58 DSGISLDVISSY-APYIPILGVCLGH 82 (190)
T ss_pred HCcchHHHHHHh-cCCCcEEEEchhH
Confidence 3 22222 4578999999997
No 59
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=83.37 E-value=1.1 Score=48.01 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=40.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC-------C---CCccCcCCCcchHHHHHHHHHcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~~il~G 388 (579)
.++|.+|++|||||+-.+..+.. +.++||+||.- | ++||-|.. +.+.++++++..-
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~--~~~~~~i~~l~~~ 161 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTAL--KTIVEAIDRIRDT 161 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHH--HHHHHHHHHHHHh
Confidence 56899999999999987766542 34799999964 2 67887654 3455666666543
No 60
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=82.97 E-value=3.4 Score=40.06 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=47.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH-
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV- 345 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl- 345 (579)
|+||-+.+. .+..|+++|++ .+.+|.+-+.... ...++.. .++|.||..||.|..
T Consensus 2 il~id~~ds-----f~~nl~~~l~~-~~~~~~v~~~~~~----------------~~~~~~~--~~~~~iilsgGP~~~~ 57 (191)
T PRK06774 2 LLLIDNYDS-----FTYNLYQYFCE-LGTEVMVKRNDEL----------------QLTDIEQ--LAPSHLVISPGPCTPN 57 (191)
T ss_pred EEEEECCCc-----hHHHHHHHHHH-CCCcEEEEeCCCC----------------CHHHHHh--cCCCeEEEcCCCCChH
Confidence 666766553 46789999986 5677665432100 0111221 357999999999985
Q ss_pred -----HHHHHhcCCCCCcEEEEcCCC
Q 008048 346 -----LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 346 -----L~AAr~~~~~~~PILGINlG~ 366 (579)
+...+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 58 EAGISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred hCCCchHHHHHh-cCCCCEEEECHHH
Confidence 3334444 3579999999987
No 61
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=82.01 E-value=4.9 Score=43.21 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=43.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-...-....+..++.+.|.+ .++++.+-..+.. ++..+.+. .-... ...++|+||.+|| |
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 91 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP-----DPSVETVL-----KGAEAMREFEPDWIIALGG-G 91 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 789999865443444566889999975 4676554222111 01100000 00111 1257899999999 6
Q ss_pred HHHHHHHhc
Q 008048 344 TVLWAASIF 352 (579)
Q Consensus 344 TlL~AAr~~ 352 (579)
.++.+++.+
T Consensus 92 SviD~AK~i 100 (375)
T cd08179 92 SPIDAAKAM 100 (375)
T ss_pred cHHHHHHHH
Confidence 788777765
No 62
>PRK06186 hypothetical protein; Validated
Probab=81.57 E-value=3.9 Score=41.89 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=30.8
Q ss_pred CCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
..++|-|++.||=|. .+.++++....++|+|||-+|-
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGm 92 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhh
Confidence 457899999999664 5778888888899999999883
No 63
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=81.53 E-value=5.2 Score=38.98 Aligned_cols=75 Identities=23% Similarity=0.206 Sum_probs=47.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL 346 (579)
|+||-+.+. ....++++|.+ .|.++.+.+..... .+.+.. .++|.||..||-|..-
T Consensus 2 il~id~~ds-----ft~~~~~~l~~-~g~~v~v~~~~~~~----------------~~~~~~--~~~d~iilsgGpg~p~ 57 (188)
T TIGR00566 2 VLMIDNYDS-----FTYNLVQYFCE-LGAEVVVKRNDSLT----------------LQEIEA--LLPLLIVISPGPCTPN 57 (188)
T ss_pred EEEEECCcC-----HHHHHHHHHHH-cCCceEEEECCCCC----------------HHHHHh--cCCCEEEEcCCCCChh
Confidence 667766553 46788899986 36766654421100 011222 2589999999998863
Q ss_pred H------HHHhcCCCCCcEEEEcCCC
Q 008048 347 W------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 347 ~------AAr~~~~~~~PILGINlG~ 366 (579)
. ..+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 58 EAGISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred hcchhHHHHHHh-ccCCCEEEECHHH
Confidence 3 44444 4578999999996
No 64
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=80.73 E-value=0.73 Score=48.14 Aligned_cols=119 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred CEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhc-----------------CCccc--ccccccchH
Q 008048 265 QTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTE-----------------SSYFS--FVQTWKDEK 324 (579)
Q Consensus 265 k~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~-----------------~~~~~--~i~~~~~~~ 324 (579)
|+|+|++-- +.|-.-....-+++.... .+.+||--.+=...+... ++..- ....+...+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~~-~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~lgtsR~~~~~~~~ 79 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAIR-RGWEVYGIRNGFEGLLNGDIIELTWEDVRGIINQGGTILGTSRFKPFKDPE 79 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHHH-TTSEEEEETTHHHHHHHCTEEEECGGGGTTGGGSSSSTTTBBBSSGGGSHH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHHh-cCCEEEEEEccCccceeeeEEeecccCccccccCCCcEeCcccCccccchh
Confidence 588888764 456666777888887764 678877522211111110 00000 000111111
Q ss_pred HHh----hh-CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------C---CCccCcCCCcchHHHHHHHHH
Q 008048 325 EIL----LL-HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 325 ~~~----~l-~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~~il 386 (579)
... .+ ..++|.+|++|||||+-.|..+.....+||+||.. | ++||-|..+ .+.++++.+.
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~--~~~~~i~~i~ 154 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVN--YIAEAIDNIK 154 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHH--HHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhH--HHHHHHHHHH
Confidence 111 11 25799999999999977766554344589999954 3 678866542 3445555554
No 65
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=80.64 E-value=5.6 Score=45.68 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=55.5
Q ss_pred CCCCCEEEEEEcCC--ChhHHHHHHHHHHHHHhcCCeEEEEc----cchhHhhhhcCCcccccccccchHHHhhhCCCcc
Q 008048 261 ESPPQTVVILTKPN--SNSVQILCAQMVRWLREQKKLNIYVE----PRVRAELLTESSYFSFVQTWKDEKEILLLHTKVD 334 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~--~~~~~~l~~eii~~L~e~~gi~V~ve----~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~D 334 (579)
.+.+++++|+.||. +-.+.++++..++=|....++.+-+- +.-|.++. ......++|
T Consensus 176 ~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~-----------------rt~dl~kyD 238 (579)
T KOG1116|consen 176 LKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIV-----------------RTLDLGKYD 238 (579)
T ss_pred cCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHH-----------------Hhhhccccc
Confidence 44588999999984 55677777766666655455544331 22222221 112457899
Q ss_pred EEEEEeCchHHHHHHHhcC-------CCCCcEEEEcCCC
Q 008048 335 LVVTLGGDGTVLWAASIFK-------GPVPPIVPFSLGS 366 (579)
Q Consensus 335 LVIvLGGDGTlL~AAr~~~-------~~~~PILGINlG~ 366 (579)
-||++||||++--+..=+- ...+||-=|.+|+
T Consensus 239 gIv~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~GS 277 (579)
T KOG1116|consen 239 GIVCVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCGS 277 (579)
T ss_pred eEEEecCCcCHHHhhhccccccchhhHhcCceeEeecCC
Confidence 9999999999987775332 1246776666654
No 66
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=80.24 E-value=7.2 Score=41.71 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=50.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+..-.......++.+.|.+ .++++.+-..+.. ++....+. .-.+. ...++|+||.||| |
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVEE-----NPSLETIM-----EAVEIAKKFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 799999876543333456778888875 4665543221111 00000000 00011 1357899999999 7
Q ss_pred HHHHHHHhcC------------------CCCCcEEEEcC
Q 008048 344 TVLWAASIFK------------------GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~------------------~~~~PILGINl 364 (579)
.++.+++.+. ...+|++.|..
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 8999888532 23578888876
No 67
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=80.20 E-value=8 Score=41.76 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=44.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++++||+-+..........++.+.|.+ .++++.+-..+.. ++..+.+... .... ...++|+||.||| |
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~-----~p~~~~v~~~--~~~~--~~~~~D~IIaiGG-G 94 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVTP-----NPTVDQVDEA--AKLG--REFGAQAVIAIGG-G 94 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCCC-----CCCHHHHHHH--HHHH--HHcCCCEEEEeCC-c
Confidence 4799999876544444556788889975 5666544222110 1111111000 0011 1246899999999 6
Q ss_pred HHHHHHHhc
Q 008048 344 TVLWAASIF 352 (579)
Q Consensus 344 TlL~AAr~~ 352 (579)
+++.+++.+
T Consensus 95 S~iD~aK~i 103 (383)
T cd08186 95 SPIDSAKSA 103 (383)
T ss_pred cHHHHHHHH
Confidence 888777665
No 68
>PRK05670 anthranilate synthase component II; Provisional
Probab=80.18 E-value=6.3 Score=38.18 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=46.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL 346 (579)
|+||-..+ +.+..+++||.+ .|+++.+-+.... ....++. .++|.||+.||-|+.-
T Consensus 2 iliid~~d-----~f~~~i~~~l~~-~g~~~~v~~~~~~----------------~~~~~~~--~~~dglIlsgGpg~~~ 57 (189)
T PRK05670 2 ILLIDNYD-----SFTYNLVQYLGE-LGAEVVVYRNDEI----------------TLEEIEA--LNPDAIVLSPGPGTPA 57 (189)
T ss_pred EEEEECCC-----chHHHHHHHHHH-CCCcEEEEECCCC----------------CHHHHHh--CCCCEEEEcCCCCChH
Confidence 56665543 346789999986 4776655332100 0111222 2389999999999862
Q ss_pred ------HHHHhcCCCCCcEEEEcCCC
Q 008048 347 ------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 347 ------~AAr~~~~~~~PILGINlG~ 366 (579)
...+.+ ...+|||||-+|.
T Consensus 58 d~~~~~~~l~~~-~~~~PvLGIClG~ 82 (189)
T PRK05670 58 EAGISLELIREF-AGKVPILGVCLGH 82 (189)
T ss_pred HcchHHHHHHHh-cCCCCEEEECHHH
Confidence 223333 2458999999997
No 69
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=79.67 E-value=5.5 Score=42.83 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=51.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++++||+-+.-. ......++.+.|.+ .++++.+-..+.. ++....+. .-.... ..++|+||.|||
T Consensus 23 ~~r~livt~~~~~-~~g~~~~v~~~L~~-~gi~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG- 89 (375)
T cd08194 23 GKRPLIVTDKVMV-KLGLVDKLTDSLKK-EGIESAIFDDVVS-----EPTDESVE-----EGVKLAKEGGCDVIIALGG- 89 (375)
T ss_pred CCeEEEEcCcchh-hcchHHHHHHHHHH-CCCeEEEECCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 4689999865432 12366789999975 4666543221111 00000010 001111 357999999999
Q ss_pred hHHHHHHHhcC-------------------CCCCcEEEEcC
Q 008048 343 GTVLWAASIFK-------------------GPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~-------------------~~~~PILGINl 364 (579)
|.++.+++.+. ...+|++.|..
T Consensus 90 GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 90 GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 68888887653 34579999986
No 70
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=79.41 E-value=11 Score=40.69 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=43.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++++||+-+.......+..++.+.|.+ .++++.+-..+.. ++....+.. .... -...++|+||.||| |.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~~-----~p~~~~v~~---~~~~-~~~~~~D~IiavGG-GS 94 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVEP-----NPTTTTVME---GAAL-AREEGCDFVVGLGG-GS 94 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCccC-----CCCHHHHHH---HHHH-HHHcCCCEEEEeCC-cc
Confidence 799999976542334567889999975 4676653222111 000000100 0000 11257999999999 67
Q ss_pred HHHHHHhc
Q 008048 345 VLWAASIF 352 (579)
Q Consensus 345 lL~AAr~~ 352 (579)
++.+++.+
T Consensus 95 ~iD~aK~i 102 (380)
T cd08185 95 SMDTAKAI 102 (380)
T ss_pred HHHHHHHH
Confidence 88777654
No 71
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=79.32 E-value=7.8 Score=41.71 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=50.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. + +....+. .-... ...++|+||.||| |
T Consensus 29 ~~~lvv~~~~~~~-~~~~~~v~~~L~~-~~~~~~~f~~v~~----~-p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK-IGVVEKVTDVLDE-AGIDYVIYDGVKP----N-PTITNVK-----DGLAVFKKEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh-cCcHHHHHHHHHH-cCCeEEEeCCCCC----C-CCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 6899998654322 2467889999975 4666543222111 0 0000000 00111 1257899999999 6
Q ss_pred HHHHHHHhcC-------------------CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-------------------GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-------------------~~~~PILGINl 364 (579)
+++.+++.+. ...+|++.|..
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 135 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINT 135 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCC
Confidence 8888887652 23578888876
No 72
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=78.86 E-value=4.9 Score=43.30 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=51.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++++||+-+..-....+..++.+.|.+ .++++.+-..+.. + +....+. .... .-...++|+||.||| |+
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~~----~-p~~~~v~---~~~~-~~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVEP----N-PRLETVR---EGIE-LCKEEKVDFILAVGG-GS 97 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCccC----C-CCHHHHH---HHHH-HHHHcCCCEEEEeCC-hH
Confidence 799999865443333456788888875 4676543221111 0 0000000 0000 011357899999999 78
Q ss_pred HHHHHHhcCC-------------------CCCcEEEEcC
Q 008048 345 VLWAASIFKG-------------------PVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~~-------------------~~~PILGINl 364 (579)
++-+++.+.- ..+|++.|..
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 8888876522 3579999986
No 73
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=77.42 E-value=29 Score=30.50 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=57.9
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+++....-....-++.++-+.|.+ .|+.+-++..-.. +++....++|+||+-. +
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~-------------------e~~~~~~~~D~iv~t~-~--- 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVN-------------------EIETYMDGVHLICTTA-R--- 59 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHH-------------------HHhhhcCCCCEEEECC-c---
Confidence 78999887766665567888889986 5787665541111 1222335689886533 1
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcC
Q 008048 346 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G 388 (579)
+ ...+ .++|++-+ ++||+.++.+++.+.|..++.|
T Consensus 60 ~--~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 60 V--DRSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred c--cccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1 1111 14674322 4689999999999998888776
No 74
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=77.42 E-value=2.1 Score=48.86 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.9
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL 364 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl 364 (579)
-++|.+|++|||||+-.|+.+.. +..+||+||.-
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPk 198 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPK 198 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 57899999999999988876543 46699999954
No 75
>PRK07053 glutamine amidotransferase; Provisional
Probab=76.98 E-value=7 Score=39.67 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=47.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
|++|+||-+...+.. ..+.+||.+ .++.+.+-.....+. . .....++|.+|+.||-.
T Consensus 2 m~~ilviqh~~~e~~----g~i~~~L~~-~g~~~~v~~~~~~~~-----------------~-~~~~~~~d~lii~Ggp~ 58 (234)
T PRK07053 2 MKTAVAIRHVAFEDL----GSFEQVLGA-RGYRVRYVDVGVDDL-----------------E-TLDALEPDLLVVLGGPI 58 (234)
T ss_pred CceEEEEECCCCCCC----hHHHHHHHH-CCCeEEEEecCCCcc-----------------C-CCCccCCCEEEECCCCC
Confidence 578999998766554 447888875 465554321100000 0 00124689999999754
Q ss_pred H------------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 T------------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 T------------lL~AAr~~~~~~~PILGINlG~ 366 (579)
. ++...+.+...++||+||-+|.
T Consensus 59 ~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 59 GVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2 2233343445678999999997
No 76
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=76.77 E-value=5.2 Score=42.59 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=43.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
.+++||+-+ .-....+..++.+.|++ .++++.+-..+... +....+... ..... ..++|.||.||| |+
T Consensus 22 gr~lvVt~~-~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~~-----p~~~~v~~~--~~~~~--~~~~D~IIaiGG-GS 89 (366)
T PF00465_consen 22 GRVLVVTDP-SLSKSGLVDRVLDALEE-AGIEVQVFDGVGPN-----PTLEDVDEA--AEQAR--KFGADCIIAIGG-GS 89 (366)
T ss_dssp TEEEEEEEH-HHHHHTHHHHHHHHHHH-TTCEEEEEEEESSS------BHHHHHHH--HHHHH--HTTSSEEEEEES-HH
T ss_pred CCEEEEECc-hHHhCccHHHHHHHHhh-CceEEEEEecCCCC-----CcHHHHHHH--HHHHH--hcCCCEEEEcCC-CC
Confidence 499999976 32333368899999975 57777553322110 000001000 00111 247999999999 67
Q ss_pred HHHHHHhc
Q 008048 345 VLWAASIF 352 (579)
Q Consensus 345 lL~AAr~~ 352 (579)
++.+++.+
T Consensus 90 ~~D~aK~v 97 (366)
T PF00465_consen 90 VMDAAKAV 97 (366)
T ss_dssp HHHHHHHH
T ss_pred cCcHHHHH
Confidence 88777654
No 77
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=76.55 E-value=2.2 Score=48.98 Aligned_cols=122 Identities=15% Similarity=0.222 Sum_probs=67.3
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhh---------------cCCcccccc----ccc
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLT---------------ESSYFSFVQ----TWK 321 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~---------------~~~~~~~i~----~~~ 321 (579)
.+++||||+-- +.|.......-+++.+... ++.+||--.+=...+.. ....++.+. .+.
T Consensus 95 ~~~~IGIv~sGG~APG~nnvI~Gv~~~a~~~~~~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~ 174 (568)
T PLN02251 95 QKLKIGVVLSGGQAPGGHNVISGIFDYLQEHAKGSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIE 174 (568)
T ss_pred ccceEEEECcCCCchhHHHHHHHHHHHHHHhCCCCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcC
Confidence 35799999864 5677777778888888643 45555431110000000 000111111 011
Q ss_pred chHHHhhh-----CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC-------C-----CCccCcCCCcchHH
Q 008048 322 DEKEILLL-----HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSEHYK 379 (579)
Q Consensus 322 ~~~~~~~l-----~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl-------G-----~LGFLt~~~~edi~ 379 (579)
.++..... .-++|.+|++|||||+-.|+.+.. +..++|+||.- | ++||=|.. +-+-
T Consensus 175 ~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~--k~~a 252 (568)
T PLN02251 175 TPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTAC--KIYS 252 (568)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHH--HHHH
Confidence 11111111 247899999999999998876543 45699999953 1 66776653 2234
Q ss_pred HHHHHHH
Q 008048 380 DYLDSVL 386 (579)
Q Consensus 380 ~~L~~il 386 (579)
+.+..|.
T Consensus 253 ~~I~ni~ 259 (568)
T PLN02251 253 EMIGNVM 259 (568)
T ss_pred HHHHHHH
Confidence 4455444
No 78
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=76.34 E-value=9.6 Score=40.45 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=51.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDG 343 (579)
++++||+-..-. ..+..++.+.|.+ .++++.+.. +.. + +..+.+. .-.+.. ..++|+||.+|| |
T Consensus 23 ~r~livt~~~~~--~~~~~~v~~~L~~-~~i~~~~~~-~~~----~-p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 87 (351)
T cd08170 23 KRALIIADEFVL--DLVGAKIEESLAA-AGIDARFEV-FGG----E-CTRAEIE-----RLAEIARDNGADVVIGIGG-G 87 (351)
T ss_pred CeEEEEECHHHH--HHHHHHHHHHHHh-CCCeEEEEE-eCC----c-CCHHHHH-----HHHHHHhhcCCCEEEEecC-c
Confidence 799999854332 2577888888875 466653221 110 0 0000000 001111 357899999999 7
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
.++.+++.+. ...+|++.|..
T Consensus 88 S~iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 88 KTLDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hhhHHHHHHHHHcCCCEEEeCC
Confidence 8999998774 24689999986
No 79
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=76.17 E-value=2.4 Score=48.57 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEc
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFS 363 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGIN 363 (579)
-++|.+|++|||||+-.|+.+.. +..+||+||.
T Consensus 163 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIP 200 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVP 200 (555)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEe
Confidence 47899999999999988876543 4589999994
No 80
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=76.12 E-value=15 Score=39.00 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=49.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDG 343 (579)
++++||+-..-.. .+..++...|.+++.+.+++.++- ....+. .-.+.. ..++|+||.+|| |
T Consensus 26 ~~~liv~d~~~~~--~~~~~v~~~l~~~~~~~~~~~~~~---------~~~~v~-----~~~~~~~~~~~d~iIaiGG-G 88 (339)
T cd08173 26 GRVLVVTGPTTKS--IAGKKVEALLEDEGEVDVVIVEDA---------TYEEVE-----KVESSARDIGADFVIGVGG-G 88 (339)
T ss_pred CeEEEEECCchHH--HHHHHHHHHHHhcCCeEEEEeCCC---------CHHHHH-----HHHHHhhhcCCCEEEEeCC-c
Confidence 6899998654332 466788888875432333432211 000010 001111 247899999998 7
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
+++.+++.++ ...+|++-|.+
T Consensus 89 s~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 89 RVIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred hHHHHHHHHHHhcCCCEEEecC
Confidence 9999988775 34689998886
No 81
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=75.57 E-value=11 Score=40.35 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++++||+-..- .......++...|.+ .++++.+-..+.. ++..+.+. .-.... ..++|+||.|||
T Consensus 26 ~~~~livt~~~~-~~~~~~~~v~~~L~~-~~~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG- 92 (376)
T cd08193 26 AKRVLVVTDPGI-LKAGLIDPLLASLEA-AGIEVTVFDDVEA-----DPPEAVVE-----AAVEAARAAGADGVIGFGG- 92 (376)
T ss_pred CCeEEEEcCcch-hhCccHHHHHHHHHH-cCCeEEEECCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 478999986531 122356788888875 4666543221111 01100010 001111 357999999999
Q ss_pred hHHHHHHHhcC-------------------CCCCcEEEEcC
Q 008048 343 GTVLWAASIFK-------------------GPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~-------------------~~~~PILGINl 364 (579)
|.++.+++.++ ...+|++.|..
T Consensus 93 Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 93 GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 78898887653 13578888876
No 82
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=75.56 E-value=2.5 Score=48.92 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEc
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFS 363 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGIN 363 (579)
-++|.+|+||||||+-.|+.+.. +..+||+||.
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 46899999999999988876543 4579999994
No 83
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=75.55 E-value=7.3 Score=41.24 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=49.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++++||+-+.-... ...++.+.|.+. ++.++-+ +. .. +....+ +.-.+.. ..++|+||.|||
T Consensus 23 ~~~~livt~~~~~~~--~~~~v~~~l~~~-~~~~~~~--~~----~~-p~~~~v-----~~~~~~~~~~~~d~IIaiGG- 86 (337)
T cd08177 23 ASRALVLTTPSLATK--LAERVASALGDR-VAGTFDG--AV----MH-TPVEVT-----EAAVAAAREAGADGIVAIGG- 86 (337)
T ss_pred CCeEEEEcChHHHHH--HHHHHHHHhccC-CcEEeCC--CC----CC-CCHHHH-----HHHHHHHHhcCCCEEEEeCC-
Confidence 368999986443322 667788888653 4444311 00 00 000000 0001111 257999999998
Q ss_pred hHHHHHHHhcCC-CCCcEEEEcC
Q 008048 343 GTVLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~~-~~~PILGINl 364 (579)
|+++.+++.+.- ..+|++-|..
T Consensus 87 Gs~iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 87 GSTIDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred cHHHHHHHHHHHHhcCCEEEEcC
Confidence 799999987652 3689998876
No 84
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=75.19 E-value=5.5 Score=42.51 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=51.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. .+....+. .-.... ..++|+||.|||
T Consensus 23 ~~~~lvv~~~~~~~-~~~~~~v~~~L~~-~~~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IiaiGG- 89 (370)
T cd08551 23 GRKALIVTDPGLVK-TGVLDKVIDSLKE-AGIEVVIFDGVEP-----NPTLSNVD-----AAVAAYREEGCDGVIAVGG- 89 (370)
T ss_pred CCeEEEEeCcchhh-CccHHHHHHHHHH-cCCeEEEECCCCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 47999998755433 3566788888875 4665543221111 00000010 001111 357899999999
Q ss_pred hHHHHHHHhcCC-------------------CCCcEEEEcC
Q 008048 343 GTVLWAASIFKG-------------------PVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~~-------------------~~~PILGINl 364 (579)
|+++.+++.+.- ..+|++.|..
T Consensus 90 Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT 130 (370)
T cd08551 90 GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPT 130 (370)
T ss_pred chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecC
Confidence 688888876531 2578888876
No 85
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=75.14 E-value=11 Score=40.92 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++++||+-+.-. ...++.++.+.|++ .++.+.+-..+.. ++..+.+.. ..+. -...++|+||.||| |
T Consensus 31 ~~~~livt~~~~~-~~g~~~~v~~~L~~-~~i~~~~f~~v~~-----np~~~~v~~---~~~~-~~~~~~D~IiaiGG-G 98 (383)
T PRK09860 31 FTRTLIVTDNMLT-KLGMAGDVQKALEE-RNIFSVIYDGTQP-----NPTTENVAA---GLKL-LKENNCDSVISLGG-G 98 (383)
T ss_pred CCEEEEEcCcchh-hCccHHHHHHHHHH-cCCeEEEeCCCCC-----CcCHHHHHH---HHHH-HHHcCCCEEEEeCC-c
Confidence 3799999864322 23456789999975 5676543222111 000000000 0000 01357999999999 5
Q ss_pred HHHHHHHhcC-------------------CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-------------------GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-------------------~~~~PILGINl 364 (579)
..+.+++.+. ...+|++.|..
T Consensus 99 S~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPT 138 (383)
T PRK09860 99 SPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINT 138 (383)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeC
Confidence 7788777653 23468888876
No 86
>PLN02335 anthranilate synthase
Probab=75.01 E-value=13 Score=37.39 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=49.5
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+.-.+|+||=..+. ....|++||++ .|+.+.+-+.... +..++. ..++|.||+.||
T Consensus 16 ~~~~~ilviD~~ds-----ft~~i~~~L~~-~g~~~~v~~~~~~----------------~~~~~~--~~~~d~iVisgG 71 (222)
T PLN02335 16 KQNGPIIVIDNYDS-----FTYNLCQYMGE-LGCHFEVYRNDEL----------------TVEELK--RKNPRGVLISPG 71 (222)
T ss_pred CccCcEEEEECCCC-----HHHHHHHHHHH-CCCcEEEEECCCC----------------CHHHHH--hcCCCEEEEcCC
Confidence 34568888854333 35679999986 4676655432000 011111 235899999999
Q ss_pred chHHH------HHHHhcCCCCCcEEEEcCCC
Q 008048 342 DGTVL------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 342 DGTlL------~AAr~~~~~~~PILGINlG~ 366 (579)
-|..- ...+.+ +..+||+||-+|.
T Consensus 72 Pg~p~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 72 PGTPQDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred CCChhhccchHHHHHHh-CCCCCEEEecHHH
Confidence 99553 334333 4568999999996
No 87
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=74.76 E-value=13 Score=39.55 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=56.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+... .....++.+.|.+ .++++.+-..+.. + +..+.+. .-.+. ...++|+||.+|| |
T Consensus 23 ~r~liv~d~~~~--~~~~~~v~~~l~~-~~~~~~~~~~~~~----~-p~~~~v~-----~~~~~~~~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL--AAAKDKIKAALEQ-SGIEITDFIWYGG----E-STYENVE-----RLKKNPAVQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH--HHHHHHHHHHHHH-CCCeEEEEEecCC----C-CCHHHHH-----HHHHHHhhcCCCEEEEeCC-c
Confidence 789999865322 2346778888875 4665532111100 0 0000000 00011 1357899999999 7
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC--CCCccCcCCC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL--GSLGFMTPFH 374 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl--G~LGFLt~~~ 374 (579)
+++.+++.+. ...+|++-|.. |+=+..+.+.
T Consensus 89 s~~D~aK~ia~~~~~p~i~VPTt~gtgse~t~~a 122 (345)
T cd08171 89 KAIDTVKVLADKLGKPVFTFPTIASNCAAVTAVS 122 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEecCccccCccccceE
Confidence 9999998875 24689999987 5555555543
No 88
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=74.67 E-value=2.7 Score=48.15 Aligned_cols=54 Identities=26% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC-------C-----CCccCcCCCcchHHHHHHHHH
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl-------G-----~LGFLt~~~~edi~~~L~~il 386 (579)
-++|.+|++|||||+-.|+.+.. +..++|+||.- | ++||=|... -+-+++..+.
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k--~~a~~I~ni~ 235 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATK--IYSELIGNVM 235 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH--HHHHHHHHHH
Confidence 46899999999999988776543 45689999953 3 667766532 2334444444
No 89
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=73.10 E-value=4.3 Score=48.07 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=38.7
Q ss_pred CCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEcC-------C---CCccCcCCCcchH
Q 008048 331 TKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL-------G---SLGFMTPFHSEHY 378 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~----------------------~~~~~PILGINl-------G---~LGFLt~~~~edi 378 (579)
.++|.+|++|||||+-.|..+. ....+||+||.- | ++||-|.. +.+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~--~~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSAL--HRI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHH--HHH
Confidence 5799999999999987776322 134789999953 3 68887764 335
Q ss_pred HHHHHHHHc
Q 008048 379 KDYLDSVLR 387 (579)
Q Consensus 379 ~~~L~~il~ 387 (579)
-++++++..
T Consensus 171 ~~aid~i~~ 179 (745)
T TIGR02478 171 CEAIDAISS 179 (745)
T ss_pred HHHHHHHHh
Confidence 566666654
No 90
>PTZ00287 6-phosphofructokinase; Provisional
Probab=72.80 E-value=3.6 Score=51.46 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=66.7
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhc---------------CCccccc-----ccccc
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTE---------------SSYFSFV-----QTWKD 322 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~---------------~~~~~~i-----~~~~~ 322 (579)
..+|||++-- +.|.......-+++.+....++..... ... .+... ...+..+ ..+..
T Consensus 836 ~~rIGVLtSGGdAPG~NnVIrgvv~~a~~~~g~~~gf~-G~~-GLl~~~~i~Lt~~~V~~i~n~GGtiLlgssR~~~f~t 913 (1419)
T PTZ00287 836 EIKIGIVFLSRQAPGAMNVLCGLYRRLKLLKGVCIAFY-GLY-GLLNNKYIIIDDDNIAKHVNQGGLELTGNSPEHSLFD 913 (1419)
T ss_pred CcEEEEECcCCCcHhHHHHHHHHHHHHHHhCCeEEEEe-Cch-hhcCCCeEECCHHHHhhHHHcCCeeecCCcCCCCCCC
Confidence 4799999875 567777788888888865445543221 211 11100 0000010 01111
Q ss_pred hHHHhhh-----CCCccEEEEEeCchHHHHHHHhcC---CCCCc--EEEEcC-------C-----CCccCcCCCcchHHH
Q 008048 323 EKEILLL-----HTKVDLVVTLGGDGTVLWAASIFK---GPVPP--IVPFSL-------G-----SLGFMTPFHSEHYKD 380 (579)
Q Consensus 323 ~~~~~~l-----~~~~DLVIvLGGDGTlL~AAr~~~---~~~~P--ILGINl-------G-----~LGFLt~~~~edi~~ 380 (579)
.+..... .-++|.+|+||||||+-.|+.+.. ..++| |+||.. | ++||=|.. +-+-+
T Consensus 914 ~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv--~~~se 991 (1419)
T PTZ00287 914 KENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSST--KVYAS 991 (1419)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHH--HHHHH
Confidence 1111111 247899999999999988876543 24566 999964 3 67775553 23445
Q ss_pred HHHHHHc
Q 008048 381 YLDSVLR 387 (579)
Q Consensus 381 ~L~~il~ 387 (579)
+|++|..
T Consensus 992 aI~nL~~ 998 (1419)
T PTZ00287 992 LIGNVLT 998 (1419)
T ss_pred HHHHHHH
Confidence 5665543
No 91
>PRK06490 glutamine amidotransferase; Provisional
Probab=72.60 E-value=6.7 Score=39.93 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
..+|+||-+...... ..+.+||++ .+.++.+-..... + ...+...++|.+|+.||-+
T Consensus 7 ~~~vlvi~h~~~~~~----g~l~~~l~~-~g~~~~v~~~~~~----~--------------~~p~~l~~~dgvii~Ggp~ 63 (239)
T PRK06490 7 KRPVLIVLHQERSTP----GRVGQLLQE-RGYPLDIRRPRLG----D--------------PLPDTLEDHAGAVIFGGPM 63 (239)
T ss_pred CceEEEEecCCCCCC----hHHHHHHHH-CCCceEEEeccCC----C--------------CCCCcccccCEEEEECCCC
Confidence 468999988765543 457788875 4555443211000 0 0001134689999999987
Q ss_pred HH------H----HHHHhcCCCCCcEEEEcCCC
Q 008048 344 TV------L----WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 Tl------L----~AAr~~~~~~~PILGINlG~ 366 (579)
++ + ...+.+....+|||||-+|.
T Consensus 64 ~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 64 SANDPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred CCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 53 2 22333334678999999997
No 92
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=72.45 E-value=14 Score=39.26 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++++||+-+.-... ...++.+.|.+ .++++.+-.....+ ..+....+ ..-.+....++|+||.||| |
T Consensus 23 ~~~~livtd~~~~~~--~~~~v~~~l~~-~~i~~~~~~~~~~~---~~pt~~~v-----~~~~~~~~~~~d~IIaIGG-G 90 (348)
T cd08175 23 YKKALIVADENTYAA--AGKKVEALLKR-AGVVVLLIVLPAGD---LIADEKAV-----GRVLKELERDTDLIIAVGS-G 90 (348)
T ss_pred CCcEEEEECCcHHHH--HHHHHHHHHHH-CCCeeEEeecCCCc---ccCCHHHH-----HHHHHHhhccCCEEEEECC-c
Confidence 368999986543332 25788888875 46644321110000 00000000 0111122227999999999 6
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
.++.+++.++ ...+|++-|..
T Consensus 91 s~~D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 91 TINDITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEecC
Confidence 9999998774 34679999986
No 93
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=72.25 E-value=15 Score=38.50 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++++||+-..-.. ....++.+.|.+. +.+.+-..+.. + +..+.+. .-.... ..++|+||.|||
T Consensus 23 ~~~~liv~~~~~~~--~~~~~v~~~l~~~--~~~~~~~~~~~----~-p~~~~v~-----~~~~~~~~~~~d~IIaiGG- 87 (332)
T cd07766 23 FDRALVVSDEGVVK--GVGEKVADSLKKL--IAVHIFDGVGP----N-PTFEEVK-----EAVERARAAEVDAVIAVGG- 87 (332)
T ss_pred CCeEEEEeCCchhh--hHHHHHHHHHHhc--CcEEEeCCcCC----C-cCHHHHH-----HHHHHHHhcCcCEEEEeCC-
Confidence 47899998644332 5667788888642 33322111100 0 1101010 001111 257999999998
Q ss_pred hHHHHHHHhcCC---CCCcEEEEcC
Q 008048 343 GTVLWAASIFKG---PVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~~---~~~PILGINl 364 (579)
|+++.+++.+.. ..+|++-|.+
T Consensus 88 Gs~~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 88 GSTLDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEeC
Confidence 799998887642 2789999976
No 94
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=72.06 E-value=3 Score=51.81 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCccEEEEEeCchHHHHHHHhcCC----------CCCcEEEEcC-------C-----CCccCcCC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKG----------PVPPIVPFSL-------G-----SLGFMTPF 373 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~----------~~~PILGINl-------G-----~LGFLt~~ 373 (579)
.++|.+|+||||||+-.|+.+... ..+||+||.- | ++||-|..
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~ 863 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVT 863 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHH
Confidence 578999999999999988875432 4799999954 2 57776654
No 95
>PRK09065 glutamine amidotransferase; Provisional
Probab=71.83 E-value=6.6 Score=39.78 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCccEEEEEeCchHH----------HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCC
Q 008048 331 TKVDLVVTLGGDGTV----------LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 331 ~~~DLVIvLGGDGTl----------L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~ 389 (579)
.++|.||+.||-+++ +...+.+...++||+||-+|. +.|...+-|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~-------------Qlla~alGg~ 108 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH-------------QLLAHALGGE 108 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH-------------HHHHHHcCCc
Confidence 458999999998762 233344444679999999997 5566666553
No 96
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=71.69 E-value=14 Score=35.96 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch--------------
Q 008048 278 VQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG-------------- 343 (579)
Q Consensus 278 ~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG-------------- 343 (579)
...+...++++|+.. |..+.+-+.... ...+......+|.||.-||-+
T Consensus 17 ~~~~~~~~~~~l~~~-G~~~~iv~~~~~-----------------~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~ 78 (189)
T cd01745 17 RDYLNQYYVDAVRKA-GGLPVLLPPVDD-----------------EEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPEL 78 (189)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEeCCCCC-----------------hHHHHHHHhhCCEEEECCCCCCChhhcCCCCCccc
Confidence 455677888999864 544333221110 011222345689999999943
Q ss_pred ---------HHHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 ---------TVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 ---------TlL~AAr~~~~~~~PILGINlG~ 366 (579)
......+.+...++||+||-+|.
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 79 GPIDPERDAFELALLRAALERGKPILGICRGM 110 (189)
T ss_pred CCCChhHHHHHHHHHHHHHHCCCCEEEEcchH
Confidence 22344455545678999999985
No 97
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=71.09 E-value=16 Score=35.71 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=46.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL 346 (579)
|+||-+.+. ....+++||++ .|+.+.+-+.... +..++. ..++|.+|+.||.|..-
T Consensus 2 il~id~~ds-----ft~~~~~~l~~-~g~~~~~~~~~~~----------------~~~~~~--~~~~~~iilsgGp~~~~ 57 (193)
T PRK08857 2 LLMIDNYDS-----FTYNLYQYFCE-LGAQVKVVRNDEI----------------DIDGIE--ALNPTHLVISPGPCTPN 57 (193)
T ss_pred EEEEECCCC-----cHHHHHHHHHH-CCCcEEEEECCCC----------------CHHHHh--hCCCCEEEEeCCCCChH
Confidence 677777554 35779999986 4666554321100 001111 13478999999998753
Q ss_pred ------HHHHhcCCCCCcEEEEcCCC
Q 008048 347 ------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 347 ------~AAr~~~~~~~PILGINlG~ 366 (579)
...+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 58 EAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred HCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 333444 4578999999997
No 98
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=71.01 E-value=3.5 Score=48.77 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=69.6
Q ss_pred CCCCEEEEEEcCC-ChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCC--------------ccccccc--ccchH
Q 008048 262 SPPQTVVILTKPN-SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS--------------YFSFVQT--WKDEK 324 (579)
Q Consensus 262 ~~pk~V~IV~Kp~-~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~--------------~~~~i~~--~~~~~ 324 (579)
.++++|+|++--. .|-.-...+-++++... .+.+||--.+=...+..... .=+.+.+ ...++
T Consensus 387 ~~~~rIaIltsGG~apGmNaair~vv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~ 465 (745)
T TIGR02478 387 ASRLRIAIIHVGAPAGGMNAATRSAVRYAIA-RGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTNRELPGK 465 (745)
T ss_pred CCceEEEEEecCCCchhHHHHHHHHHHHHHh-CCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccCCCCchh
Confidence 4468999998754 45555566778888765 46777642221111111000 0000110 00011
Q ss_pred HHhhh-----CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEcC----------CCCccCcCCCcchHHHHHH
Q 008048 325 EILLL-----HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLD 383 (579)
Q Consensus 325 ~~~~l-----~~~~DLVIvLGGDGTlL~AAr~~~------~~~~PILGINl----------G~LGFLt~~~~edi~~~L~ 383 (579)
.+..+ .-++|.+|++|||||+-.+..+.. ...+||+||.- =++||-|.. +.+.++++
T Consensus 466 ~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~--~~~~~~id 543 (745)
T TIGR02478 466 DLGMIAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTAL--NEITEYCD 543 (745)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHH--HHHHHHHH
Confidence 11111 256899999999999987776543 25699999954 278887765 33455566
Q ss_pred HHHc
Q 008048 384 SVLR 387 (579)
Q Consensus 384 ~il~ 387 (579)
++..
T Consensus 544 ~i~~ 547 (745)
T TIGR02478 544 NIKQ 547 (745)
T ss_pred HHHH
Confidence 5543
No 99
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=70.66 E-value=12 Score=38.74 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=52.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hh-CCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LL-HTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l-~~~~DLVIvLGG 341 (579)
.++++||+-++-.++ ..+++.+.|+. .++++.+-...... .... ....+. .+ ..++|+||.+||
T Consensus 19 ~~~~lvv~d~~t~~~--~g~~v~~~l~~-~g~~v~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~d~ii~vGg 84 (250)
T PF13685_consen 19 LKKVLVVTDENTYKA--AGEKVEESLKS-AGIEVAVIEEFVGD-----ADED------EVEKLVEALRPKDADLIIGVGG 84 (250)
T ss_dssp -SEEEEEEETTHHHH--HHHHHHHHHHT-TT-EEEEEE-EE--------BHH------HHHHHHTTS--TT--EEEEEES
T ss_pred CCcEEEEEcCCHHHH--HHHHHHHHHHH-cCCeEEEEecCCCC-----CCHH------HHHHHHHHhcccCCCEEEEeCC
Confidence 579999998764332 35677777764 57777531100000 0000 011111 22 357899999999
Q ss_pred chHHHHHHHhcC-CCCCcEEEEcC--CCCccCcCC
Q 008048 342 DGTVLWAASIFK-GPVPPIVPFSL--GSLGFMTPF 373 (579)
Q Consensus 342 DGTlL~AAr~~~-~~~~PILGINl--G~LGFLt~~ 373 (579)
||+...+++.+ ..++|.+.|.+ =.=||-+++
T Consensus 85 -G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~~ 118 (250)
T PF13685_consen 85 -GTIIDIAKYAAFELGIPFISVPTAASHDGFASPV 118 (250)
T ss_dssp -HHHHHHHHHHHHHHT--EEEEES--SSGGGTSSE
T ss_pred -cHHHHHHHHHHHhcCCCEEEeccccccccccCCC
Confidence 89999999886 35789999876 455665553
No 100
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=70.54 E-value=9.8 Score=44.96 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=49.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..++|+||=.-+ . ....+.+||++ .|+++.+-+.... . .+.+ ..++|.||+.||-
T Consensus 515 ~~~~IlVID~gd-s----~~~~l~~~L~~-~G~~v~vv~~~~~-----------------~-~~~~-~~~~DgLILsgGP 569 (717)
T TIGR01815 515 EGRRILLVDHED-S----FVHTLANYLRQ-TGASVTTLRHSHA-----------------E-AAFD-ERRPDLVVLSPGP 569 (717)
T ss_pred CCCEEEEEECCC-h----hHHHHHHHHHH-CCCeEEEEECCCC-----------------h-hhhh-hcCCCEEEEcCCC
Confidence 357899987653 2 24678889986 4666644321100 0 0101 2458999999999
Q ss_pred hHH-----HHHHHhcCCCCCcEEEEcCCC
Q 008048 343 GTV-----LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GTl-----L~AAr~~~~~~~PILGINlG~ 366 (579)
|+. ....+.+....+|||||-+|.
T Consensus 570 Gsp~d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 570 GRPADFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred CCchhcccHHHHHHHHHCCCCEEEECHHH
Confidence 885 333444345679999999997
No 101
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=70.50 E-value=19 Score=38.74 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=41.6
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+.-. ...++...|++ .++++.+-. +.. + +..+.+. +-... ...++|+||.||| |
T Consensus 23 ~r~livtd~~~~----~~~~v~~~L~~-~g~~~~~~~-~~~----~-p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 85 (374)
T cd08183 23 RRVLLVTGASSL----RAAWLIEALRA-AGIEVTHVV-VAG----E-PSVELVD-----AAVAEARNAGCDVVIAIGG-G 85 (374)
T ss_pred CcEEEEECCchH----HHHHHHHHHHH-cCCeEEEec-CCC----C-cCHHHHH-----HHHHHHHhcCCCEEEEecC-c
Confidence 789999875432 67888888975 567654421 110 1 1101010 00111 1357999999999 6
Q ss_pred HHHHHHHhc
Q 008048 344 TVLWAASIF 352 (579)
Q Consensus 344 TlL~AAr~~ 352 (579)
.++.+++.+
T Consensus 86 S~~D~aK~i 94 (374)
T cd08183 86 SVIDAGKAI 94 (374)
T ss_pred hHHHHHHHH
Confidence 888877654
No 102
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=70.35 E-value=19 Score=38.57 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=50.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDG 343 (579)
++++||+-+.-. .....++.+.|.+ .++++.+.. +.. +. ..+.+. .-.... ..++|+||.||| |
T Consensus 30 ~~~livtd~~~~--~~~~~~v~~~l~~-~~~~~~~~~-~~~----ep-~~~~v~-----~~~~~~~~~~~d~IIavGG-G 94 (366)
T PRK09423 30 KRALVIADEFVL--GIVGDRVEASLKE-AGLTVVFEV-FNG----EC-SDNEID-----RLVAIAEENGCDVVIGIGG-G 94 (366)
T ss_pred CEEEEEEChhHH--HHHHHHHHHHHHh-CCCeEEEEE-eCC----CC-CHHHHH-----HHHHHHHhcCCCEEEEecC-h
Confidence 789999854432 2367888888875 466553221 110 10 000010 001111 246899999999 7
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
+++.+++.++ ...+|++.|..
T Consensus 95 sv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 95 KTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 9999888775 24689999986
No 103
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=70.23 E-value=36 Score=34.94 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..++||+++.++.+......+.+.+...+ .|+++..-+ +.. ...+ ...+..+..+.|.+ .++.|
T Consensus 130 ~~k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~-v~~-----------~~~~--~~~~~~l~~~~da~-~~~~~ 193 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIP-VPS-----------SEDL--EQALEALAEKVDAL-YLLPD 193 (294)
T ss_dssp T--EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEE-ESS-----------GGGH--HHHHHHHCTT-SEE-EE-S-
T ss_pred CCCEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEe-cCc-----------HhHH--HHHHHHhhccCCEE-EEECC
Confidence 36899999999887666777777777765 578764321 100 0001 12344566788855 45688
Q ss_pred hHHHHH----HHhcCCCCCcEEEEcCC--CCccCcCCCcc--h----HHHHHHHHHcCC
Q 008048 343 GTVLWA----ASIFKGPVPPIVPFSLG--SLGFMTPFHSE--H----YKDYLDSVLRGP 389 (579)
Q Consensus 343 GTlL~A----Ar~~~~~~~PILGINlG--~LGFLt~~~~e--d----i~~~L~~il~G~ 389 (579)
+++... .+......+||+|.+-. .-|.|..+..+ + .-+...+|++|.
T Consensus 194 ~~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~Gal~~~~~~~~~~G~~Aa~~a~~IL~G~ 252 (294)
T PF04392_consen 194 NLVDSNFEAILQLANEAKIPVFGSSDFYVKAGALGGYSVDYYEQGRQAAEMAVRILKGE 252 (294)
T ss_dssp HHHHHTHHHHHHHCCCTT--EEESSHHHHCTT-SEEEE--HHHHHHHHHHHHHHHCTT-
T ss_pred cchHhHHHHHHHHHHhcCCCEEECCHHHhcCCcEEEEccCHHHHHHHHHHHHHHHHCCC
Confidence 888753 34445678999998742 23444443332 2 234577788884
No 104
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=69.82 E-value=3.9 Score=48.50 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=69.9
Q ss_pred CCCCCEEEEEEcCC-ChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCC-cc-------------ccccc--ccch
Q 008048 261 ESPPQTVVILTKPN-SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS-YF-------------SFVQT--WKDE 323 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~-~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~-~~-------------~~i~~--~~~~ 323 (579)
..++.+|+|++--. .|-.-...+-++++... .+.+||--.+=...+..... .. +.+.+ ....
T Consensus 386 ~~~~~~IaIltsGG~apGmNaairavv~~a~~-~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~ 464 (762)
T cd00764 386 EKTNLNIAIVNVGAPAAGMNAAVRSAVRYGLA-HGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPK 464 (762)
T ss_pred cccccEEEEEecCCCchhHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcH
Confidence 34457999998754 45555556778888765 47777642221111211000 00 01111 0001
Q ss_pred HHHhhh-----CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEcC-------C---CCccCcCCCcchHHHHH
Q 008048 324 KEILLL-----HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYL 382 (579)
Q Consensus 324 ~~~~~l-----~~~~DLVIvLGGDGTlL~AAr~~~------~~~~PILGINl-------G---~LGFLt~~~~edi~~~L 382 (579)
+.+..+ ..++|.+|+||||||+-.+.++.. ...+|++||.- | ++||=|.+ +.+-+++
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAl--n~~~~~i 542 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTAL--NALMKYC 542 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHH--HHHHHHH
Confidence 111111 356999999999999987765543 25799999954 3 68887764 3455666
Q ss_pred HHHHc
Q 008048 383 DSVLR 387 (579)
Q Consensus 383 ~~il~ 387 (579)
+++..
T Consensus 543 d~i~~ 547 (762)
T cd00764 543 DRIKQ 547 (762)
T ss_pred HHHHH
Confidence 66643
No 105
>PRK13566 anthranilate synthase; Provisional
Probab=69.57 E-value=14 Score=43.62 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..++|+||=.-+. ....+.+||++ .|.+|.+-+.... ...+. ..++|.||+.||-
T Consensus 525 ~g~~IlvID~~ds-----f~~~l~~~Lr~-~G~~v~vv~~~~~-----------------~~~~~--~~~~DgVVLsgGp 579 (720)
T PRK13566 525 EGKRVLLVDHEDS-----FVHTLANYFRQ-TGAEVTTVRYGFA-----------------EEMLD--RVNPDLVVLSPGP 579 (720)
T ss_pred CCCEEEEEECCCc-----hHHHHHHHHHH-CCCEEEEEECCCC-----------------hhHhh--hcCCCEEEECCCC
Confidence 4578988877532 25678899986 4777654321100 01111 1368999999998
Q ss_pred hH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 343 GT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
|+ +....+.+...++|||||-+|.
T Consensus 580 gsp~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 580 GRPSDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred CChhhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 75 3444555556689999999996
No 106
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=69.11 E-value=14 Score=36.52 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=46.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL 346 (579)
|+||-+.+. .+..|++||++ .++++.+-+.... ...++. ..++|.||..||=|-..
T Consensus 2 il~idn~ds-----ft~nl~~~l~~-~g~~v~v~~~~~~----------------~~~~~~--~~~~d~iIlsgGP~~p~ 57 (195)
T PRK07649 2 ILMIDNYDS-----FTFNLVQFLGE-LGQELVVKRNDEV----------------TISDIE--NMKPDFLMISPGPCSPN 57 (195)
T ss_pred EEEEeCCCc-----cHHHHHHHHHH-CCCcEEEEeCCCC----------------CHHHHh--hCCCCEEEECCCCCChH
Confidence 566666543 35679999986 4677665432100 001111 13589999999998753
Q ss_pred ------HHHHhcCCCCCcEEEEcCCC
Q 008048 347 ------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 347 ------~AAr~~~~~~~PILGINlG~ 366 (579)
...+.+. ..+|||||-+|.
T Consensus 58 ~~~~~~~~i~~~~-~~~PvLGIClG~ 82 (195)
T PRK07649 58 EAGISMEVIRYFA-GKIPIFGVCLGH 82 (195)
T ss_pred hCCCchHHHHHhc-CCCCEEEEcHHH
Confidence 3333333 568999999997
No 107
>PRK07567 glutamine amidotransferase; Provisional
Probab=68.96 E-value=6.3 Score=40.17 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=25.3
Q ss_pred CCccEEEEEeCchHH-----------------H-HHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTV-----------------L-WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTl-----------------L-~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||+.||-+.+ | .+.+.+...++|||||-+|.
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 458999999996432 1 12233335679999999997
No 108
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=68.77 E-value=14 Score=39.55 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=40.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh--CCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l--~~~~DLVIvLGG 341 (579)
.++++||+-+.-. ....+.+.|.+ .++++.+-..+.. ++..+.+ ....+. ..++|+||.+||
T Consensus 23 ~~~~livtd~~~~----~~~~~~~~l~~-~~~~~~~~~~~~~-----~p~~~~v------~~~~~~~~~~~~D~IIavGG 86 (367)
T cd08182 23 GKRVLLVTGPRSA----IASGLTDILKP-LGTLVVVFDDVQP-----NPDLEDL------AAGIRLLREFGPDAVLAVGG 86 (367)
T ss_pred CCeEEEEeCchHH----HHHHHHHHHHH-cCCeEEEEcCcCC-----CcCHHHH------HHHHHHHHhcCcCEEEEeCC
Confidence 3789999865433 44667777865 4565554222211 0000101 011111 247899999999
Q ss_pred chHHHHHHHhc
Q 008048 342 DGTVLWAASIF 352 (579)
Q Consensus 342 DGTlL~AAr~~ 352 (579)
|+++.+++.+
T Consensus 87 -Gs~~D~aK~i 96 (367)
T cd08182 87 -GSVLDTAKAL 96 (367)
T ss_pred -cHHHHHHHHH
Confidence 6888887765
No 109
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=67.96 E-value=18 Score=38.43 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=49.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE---EccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY---VEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~---ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvL 339 (579)
.++++||+-..-.. ....++.+.|.+ .++++. ++.... .+..+.+... .....+ -..+.|+||.+
T Consensus 20 ~~~~livtd~~~~~--~~~~~v~~~L~~-~g~~~~~~~~~~~e~------~~~~~~v~~~--~~~~~~~~~~r~d~IIav 88 (344)
T TIGR01357 20 PSKLVIITDETVAD--LYADKLLEALQA-LGYNVLKLTVPDGEE------SKSLETVQRL--YDQLLEAGLDRSSTIIAL 88 (344)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHh-cCCceeEEEeCCCCC------CCCHHHHHHH--HHHHHHcCCCCCCEEEEE
Confidence 37899998654433 257788888875 355432 211100 0000000000 001111 12346999999
Q ss_pred eCchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 340 GGDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 340 GGDGTlL~AAr~~~---~~~~PILGINl 364 (579)
|| |+++.+++.++ ...+|++-|.+
T Consensus 89 GG-Gsv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 89 GG-GVVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred cC-hHHHHHHHHHHHHHccCCCEEEecC
Confidence 98 68888887764 45688888876
No 110
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=67.70 E-value=14 Score=39.51 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. .+....+. .-... ...++|+||.|||
T Consensus 24 ~~~~liv~~~~~~~-~~~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG- 90 (370)
T cd08192 24 IKRPLIVTDPGLAA-LGLVARVLALLED-AGLAAALFDEVPP-----NPTEAAVE-----AGLAAYRAGGCDGVIAFGG- 90 (370)
T ss_pred CCeEEEEcCcchhh-CccHHHHHHHHHH-cCCeEEEeCCCCC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 47899998654322 2357888999975 4666543221110 01000010 00111 1357899999999
Q ss_pred hHHHHHHHhc
Q 008048 343 GTVLWAASIF 352 (579)
Q Consensus 343 GTlL~AAr~~ 352 (579)
|+++.+++.+
T Consensus 91 GSviD~aK~i 100 (370)
T cd08192 91 GSALDLAKAV 100 (370)
T ss_pred chHHHHHHHH
Confidence 6888777654
No 111
>PRK10586 putative oxidoreductase; Provisional
Probab=67.56 E-value=21 Score=38.67 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=31.0
Q ss_pred CCccEEEEEeCchHHHHHHHhcCC-CCCcEEEEcC--CCCccCcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKG-PVPPIVPFSL--GSLGFMTP 372 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~-~~~PILGINl--G~LGFLt~ 372 (579)
.++|+||.+|| |.++.+++.+.. ..+|++.|.. |+=+..++
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT~a~t~s~~s~ 128 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeCCccccccccC
Confidence 46899999998 699999988753 4789999987 44333443
No 112
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=67.48 E-value=17 Score=37.30 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred CEEEEEEcCCC---hhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 265 QTVVILTKPNS---NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 265 k~V~IV~Kp~~---~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
..|||...... .....+....++.+...+++.|.+...... +...++..+.+|-+|..||
T Consensus 8 P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~-----------------~~~~~~~l~~~DGlil~GG 70 (254)
T PRK11366 8 PVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAE-----------------PSLLEQLLPKLDGIYLPGS 70 (254)
T ss_pred CEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCC-----------------HHHHHHHHHhCCEEEeCCC
Confidence 34888753211 112224455667777667787776532110 1112233456899999998
Q ss_pred chHH----------------------HHHHHhcCCCCCcEEEEcCCC
Q 008048 342 DGTV----------------------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 342 DGTl----------------------L~AAr~~~~~~~PILGINlG~ 366 (579)
...+ +...+.+....+|||||-.|.
T Consensus 71 ~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 71 PSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred CCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 3222 233444445679999999996
No 113
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=67.18 E-value=24 Score=32.44 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=56.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++|+|++-++++.-.+....++.+|++..|++|.++.-...++...+ ...|. ......+|.||+|=--|+
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g-----~~~W~-----~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQG-----PPRWM-----ERQIREADKVLIVCSPGY 70 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCC-----HHHHH-----HHHHhcCCEEEEEeccch
Confidence 58999999999999999999999999755999998764332221111 11232 223567999999999998
Q ss_pred HHHHHHhcC
Q 008048 345 VLWAASIFK 353 (579)
Q Consensus 345 lL~AAr~~~ 353 (579)
.-.......
T Consensus 71 ~~~~~~~~~ 79 (150)
T PF08357_consen 71 KERYDKKAD 79 (150)
T ss_pred hHHHHHhhc
Confidence 776665543
No 114
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=66.17 E-value=15 Score=39.82 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=50.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
++++||+-..-.. ..+..++.+.|.+ .++++.+-..+.. ..+..+ + ..... ....++|+||.||| |
T Consensus 23 ~~~livt~~~~~~-~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~-v-----~~~~~~~~~~~~D~IIaiGG-G 89 (386)
T cd08191 23 SRALIVTDERMAG-TPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSE-L-----CDAASAAARAGPDVIIGLGG-G 89 (386)
T ss_pred CeEEEEECcchhh-cchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHH-H-----HHHHHHHHhcCCCEEEEeCC-c
Confidence 7899999644322 3467788888875 4666544222210 000000 0 00011 11367999999999 6
Q ss_pred HHHHHHHhcCC-------------------CCCcEEEEcC
Q 008048 344 TVLWAASIFKG-------------------PVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~~-------------------~~~PILGINl 364 (579)
.++.+++.+.- ..+|++.|.+
T Consensus 90 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (386)
T cd08191 90 SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPT 129 (386)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeC
Confidence 88888876531 1578888875
No 115
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=66.12 E-value=19 Score=39.54 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++++||+-+.- ....++.++++.|.+ .++++.+-..+..+ +..+.+. ...+ .--..++|.||.||| |
T Consensus 29 ~~r~liVTd~~~-~~~g~~~~v~~~L~~-~~i~~~if~~v~p~-----P~~~~v~---~~~~-~~~~~~~D~iIalGG-G 96 (377)
T COG1454 29 AKRALIVTDRGL-AKLGLLDKVLDSLDA-AGIEYEVFDEVEPE-----PTIETVE---AGAE-VAREFGPDTIIALGG-G 96 (377)
T ss_pred CCceEEEECCcc-ccchhHHHHHHHHHh-cCCeEEEecCCCCC-----CCHHHHH---HHHH-HHHhcCCCEEEEeCC-c
Confidence 479999998873 344678999999986 56666553332211 0000000 0000 111467999999999 6
Q ss_pred HHHHHHHhc
Q 008048 344 TVLWAASIF 352 (579)
Q Consensus 344 TlL~AAr~~ 352 (579)
..+.+|+.+
T Consensus 97 S~~D~AK~i 105 (377)
T COG1454 97 SVIDAAKAI 105 (377)
T ss_pred cHHHHHHHH
Confidence 778777654
No 116
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=66.12 E-value=18 Score=41.32 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=51.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCe----EEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKL----NIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi----~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL 339 (579)
.-+|+||.|...- ...-..+.+.|.. .++ .|....-.+.++.. ... +...++|.||.-
T Consensus 289 ~v~IalVGKY~~~--~daY~SI~eAL~~-ag~~~~~~V~~~~i~se~i~~--------------~~~-~~L~~~dGIiLp 350 (525)
T TIGR00337 289 EVTIGIVGKYVEL--KDSYLSVIEALKH-AGAKLDTKVNIKWIDSEDLEE--------------EGA-EFLKGVDGILVP 350 (525)
T ss_pred CcEEEEEeCCcCC--HHHHHHHHHHHHh-CccccCCEEEEEEecHHHhhh--------------hhh-hhhcCCCEEEeC
Confidence 4789999997542 2233678888864 343 33322111111100 000 124668999999
Q ss_pred eCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 340 GGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 340 GGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
||-|. .+.+++.+...++|++||-+|.
T Consensus 351 GG~G~~~~~g~i~ai~~a~e~~iP~LGIClG~ 382 (525)
T TIGR00337 351 GGFGERGVEGKILAIKYARENNIPFLGICLGM 382 (525)
T ss_pred CCCCChhhcChHHHHHHHHHcCCCEEEEcHHH
Confidence 99754 3456676666789999998873
No 117
>PRK05637 anthranilate synthase component II; Provisional
Probab=65.48 E-value=19 Score=36.01 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=46.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
+++|+||=..+. ....++++|.+ .+..+.+-+... +..++. ..++|.||..||-|
T Consensus 1 ~~~il~iD~~ds-----f~~nl~~~l~~-~g~~~~v~~~~~-----------------~~~~l~--~~~~~~iIlsgGPg 55 (208)
T PRK05637 1 MTHVVLIDNHDS-----FVYNLVDAFAV-AGYKCTVFRNTV-----------------PVEEIL--AANPDLICLSPGPG 55 (208)
T ss_pred CCEEEEEECCcC-----HHHHHHHHHHH-CCCcEEEEeCCC-----------------CHHHHH--hcCCCEEEEeCCCC
Confidence 467888877543 24568888875 455444322100 001111 23679999999999
Q ss_pred HHHHHH---HhcC--CCCCcEEEEcCCC
Q 008048 344 TVLWAA---SIFK--GPVPPIVPFSLGS 366 (579)
Q Consensus 344 TlL~AA---r~~~--~~~~PILGINlG~ 366 (579)
..-.+. +.+. ...+|||||-+|.
T Consensus 56 ~~~d~~~~~~li~~~~~~~PiLGIClG~ 83 (208)
T PRK05637 56 HPRDAGNMMALIDRTLGQIPLLGICLGF 83 (208)
T ss_pred CHHHhhHHHHHHHHHhCCCCEEEEcHHH
Confidence 885441 2221 1368999999996
No 118
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=65.34 E-value=18 Score=38.38 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=50.8
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
++++||+-+.-... ...++.+.|.+ .++++.+ ...... ++..+.+. .-...+..++|+||.||| |
T Consensus 25 ~kvlivtd~~~~~~--~~~~i~~~L~~-~~~~~~i~~~~~~~-----~p~~~~v~-----~~~~~~~~~~d~IIaiGG-G 90 (332)
T cd08549 25 SKIMIVCGNNTYKV--AGKEIIERLES-NNFTKEVLERDSLL-----IPDEYELG-----EVLIKLDKDTEFLLGIGS-G 90 (332)
T ss_pred CcEEEEECCcHHHH--HHHHHHHHHHH-cCCeEEEEecCCCC-----CCCHHHHH-----HHHHHhhcCCCEEEEECC-c
Confidence 68999987655443 24788888875 3554433 111100 00111010 111122238999999999 6
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
+++.+++.++ ...+|++-|..
T Consensus 91 sv~D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 91 TIIDLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 9998888764 24689998886
No 119
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=65.29 E-value=15 Score=39.57 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=41.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+.-.. ..+..++...|.+ .++++.+-..+.. ++..+.+. .-... ...++|+||.||| |
T Consensus 31 ~~~lvvtd~~~~~-~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 97 (382)
T PRK10624 31 KKALIVTDKTLVK-CGVVAKVTDVLDA-AGLAYEIYDGVKP-----NPTIEVVK-----EGVEVFKASGADYLIAIGG-G 97 (382)
T ss_pred CEEEEEeCcchhh-CcchHHHHHHHHH-CCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-h
Confidence 6899998643221 2357788888875 4665543222111 00000000 00111 1357999999999 6
Q ss_pred HHHHHHHhc
Q 008048 344 TVLWAASIF 352 (579)
Q Consensus 344 TlL~AAr~~ 352 (579)
.++.+++.+
T Consensus 98 S~iD~aK~i 106 (382)
T PRK10624 98 SPQDTCKAI 106 (382)
T ss_pred HHHHHHHHH
Confidence 888888643
No 120
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=65.23 E-value=37 Score=36.32 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=48.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDG 343 (579)
++++||+-+.-... ...++.+.|.+.+.+.+++.++ +..+.+. .-.+.. ..++|+||.+|| |
T Consensus 35 ~~~livtd~~~~~~--~~~~l~~~l~~~~~~~~~~~~~---------~t~~~v~-----~~~~~~~~~~~d~IIaiGG-G 97 (350)
T PRK00843 35 GRALIVTGPTTKKI--AGDRVEENLEDAGDVEVVIVDE---------ATMEEVE-----KVEEKAKDVNAGFLIGVGG-G 97 (350)
T ss_pred CeEEEEECCcHHHH--HHHHHHHHHHhcCCeeEEeCCC---------CCHHHHH-----HHHHHhhccCCCEEEEeCC-c
Confidence 68999987665433 3467777786533233333221 0000010 001111 235899999999 7
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
+++.+++.++ ...+|++-|.+
T Consensus 98 sv~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 98 KVIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred hHHHHHHHHHHhcCCCEEEeCC
Confidence 9998887764 24678888876
No 121
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=65.07 E-value=26 Score=37.77 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=49.1
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHhhhhcCCcccccccccchHHHhh--hCCCccEEE
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILL--LHTKVDLVV 337 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~--ve~~va~~l~~~~~~~~~i~~~~~~~~~~~--l~~~~DLVI 337 (579)
..+++++||+-+.-.. ....++.+.|.+ .++.+. +-+.... .+..+.+... .....+ ...++|+||
T Consensus 24 ~~~~~~lvVtd~~v~~--~~~~~v~~~l~~-~g~~~~~~v~~~~e~-----~~s~~~v~~~--~~~l~~~~~~r~~d~IV 93 (354)
T cd08199 24 EGSGRRFVVVDQNVDK--LYGKKLREYFAH-HNIPLTILVLRAGEA-----AKTMDTVLKI--VDALDAFGISRRREPVL 93 (354)
T ss_pred cCCCeEEEEECccHHH--HHHHHHHHHHHh-cCCceEEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCCCEEE
Confidence 3578999999554332 245788888875 355433 2111100 0011101000 000001 112349999
Q ss_pred EEeCchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 338 TLGGDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 338 vLGGDGTlL~AAr~~~---~~~~PILGINl 364 (579)
.+|| |+++.+++.++ ..++|++-|.+
T Consensus 94 aiGG-G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 94 AIGG-GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred EECC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 9998 68888887765 45778777765
No 122
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=64.89 E-value=19 Score=39.12 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-. ......++.+.|++ .++++.+-..+.. ++..+.+. .-... ...++|+||.|||
T Consensus 21 ~~k~liVtd~~~~-~~g~~~~v~~~L~~-~gi~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG- 87 (398)
T cd08178 21 KKRAFIVTDRFMV-KLGYVDKVIDVLKR-RGVETEVFSDVEP-----DPSLETVR-----KGLELMNSFKPDTIIALGG- 87 (398)
T ss_pred CCeEEEEcChhHH-hCccHHHHHHHHHH-CCCeEEEecCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 3789999853311 11256778888875 4676654222111 01100010 00111 1357899999999
Q ss_pred hHHHHHHHhc
Q 008048 343 GTVLWAASIF 352 (579)
Q Consensus 343 GTlL~AAr~~ 352 (579)
|.++.+++.+
T Consensus 88 GS~iD~AK~i 97 (398)
T cd08178 88 GSPMDAAKIM 97 (398)
T ss_pred ccHHHHHHHH
Confidence 5677666554
No 123
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=64.15 E-value=14 Score=35.47 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.9
Q ss_pred CCccEEEEEeCchH------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGT------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGT------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||..||-|+ .+...+.+....+||+||-+|.
T Consensus 38 ~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 38 LDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred cCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 46899999999654 3444555556679999999986
No 124
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=64.12 E-value=20 Score=39.15 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGD 342 (579)
.++++|++.+.-.. ..+..++.+.|++ .++++.+...+.. ++....+. +... --..++|+||.|||
T Consensus 49 ~~~~lvv~~~~~~~-~g~~~~v~~~L~~-~gi~~~~~~~v~~-----~P~~~~v~-----~~~~~~r~~~~D~IiavGG- 115 (395)
T PRK15454 49 LKHLFVMADSFLHQ-AGMTAGLTRSLAV-KGIAMTLWPCPVG-----EPCITDVC-----AAVAQLRESGCDGVIAFGG- 115 (395)
T ss_pred CCEEEEEcCcchhh-CccHHHHHHHHHH-cCCeEEEECCCCC-----CcCHHHHH-----HHHHHHHhcCcCEEEEeCC-
Confidence 47888887643221 3456888989975 5777654322211 00000000 0000 11368999999999
Q ss_pred hHHHHHHHhc
Q 008048 343 GTVLWAASIF 352 (579)
Q Consensus 343 GTlL~AAr~~ 352 (579)
|..+.+++.+
T Consensus 116 GS~iD~AKai 125 (395)
T PRK15454 116 GSVLDAAKAV 125 (395)
T ss_pred hHHHHHHHHH
Confidence 6788877664
No 125
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=63.90 E-value=23 Score=37.94 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++++||+-+.-.+ ....++.+.|.+..++.+++-+.... .+..+.+... .....+. ..+.|+||.+||
T Consensus 23 ~~k~livtd~~v~~--~~~~~v~~~L~~~~~~~~~~~~~~e~-----~k~~~~v~~~--~~~~~~~~~~r~d~IIaiGG- 92 (344)
T cd08169 23 FDQYFFISDSGVAD--LIAHYIAEYLSKILPVHILVIEGGEE-----YKTFETVTRI--LERAIALGANRRTAIVAVGG- 92 (344)
T ss_pred CCeEEEEECccHHH--HHHHHHHHHHHhhcCceEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCcEEEEECC-
Confidence 47899998755433 46778888886413555544221111 0010000000 0011111 356899999998
Q ss_pred hHHHHHHHhcC---CCCCcEEEEcC
Q 008048 343 GTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~---~~~~PILGINl 364 (579)
|+++.+++.++ ...+|++-|.+
T Consensus 93 Gsv~D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 93 GATGDVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred cHHHHHHHHHHHHhccCCcEEEecC
Confidence 68888777654 34678888776
No 126
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=63.67 E-value=42 Score=35.68 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCe--EEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKL--NIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi--~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
.++++||+-+.-.+ ....++.+.|.+. ++ .+++-+... ..+....+... .....+ -..+.|+||.+|
T Consensus 24 ~~~~livtd~~~~~--~~~~~l~~~L~~~-g~~~~~~~~~~~e-----~~~~~~~v~~~--~~~~~~~~~~r~d~IIaiG 93 (345)
T cd08195 24 GSKILIVTDENVAP--LYLEKLKAALEAA-GFEVEVIVIPAGE-----ASKSLETLEKL--YDALLEAGLDRKSLIIALG 93 (345)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHhc-CCceEEEEeCCCC-----CcCCHHHHHHH--HHHHHHcCCCCCCeEEEEC
Confidence 47899998655443 4677888888753 43 333211110 00000000000 000111 123459999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 341 GDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 341 GDGTlL~AAr~~~---~~~~PILGINl 364 (579)
| |+++.+++.++ ..++|++-|.+
T Consensus 94 G-Gsv~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 94 G-GVVGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred C-hHHHhHHHHHHHHHhcCCCeEEcch
Confidence 8 78888887764 45678877765
No 127
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=63.58 E-value=18 Score=39.11 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-. ...+..++.+.|.+ .++++.+-..+.. ++..+.+. .-.+. ...++|+||.|||
T Consensus 29 ~~r~lvvt~~~~~-~~g~~~~v~~~L~~-~~i~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IiaiGG- 95 (379)
T TIGR02638 29 FKKALVVTDKDLI-KFGVADKVTDLLDE-AGIAYELFDEVKP-----NPTITVVK-----AGVAAFKASGADYLIAIGG- 95 (379)
T ss_pred CCEEEEEcCcchh-hccchHHHHHHHHH-CCCeEEEECCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 3799999865421 12256788888875 5666544222111 00000000 00011 1357899999999
Q ss_pred hHHHHHHHh
Q 008048 343 GTVLWAASI 351 (579)
Q Consensus 343 GTlL~AAr~ 351 (579)
|.++.+++.
T Consensus 96 GSviD~aKa 104 (379)
T TIGR02638 96 GSPIDTAKA 104 (379)
T ss_pred hHHHHHHHH
Confidence 688877764
No 128
>PRK08250 glutamine amidotransferase; Provisional
Probab=63.56 E-value=18 Score=36.67 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=45.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+|+.+..-+.. ..+..|+.+ .|+++.+-. +.. .. .+.....++|.||+.||=++.
T Consensus 2 ~i~vi~h~~~e~~----g~~~~~~~~-~g~~~~~~~-~~~----g~-------------~~p~~~~~~d~vii~GGp~~~ 58 (235)
T PRK08250 2 RVHFIIHESFEAP----GAYLKWAEN-RGYDISYSR-VYA----GE-------------ALPENADGFDLLIVMGGPQSP 58 (235)
T ss_pred eEEEEecCCCCCc----hHHHHHHHH-CCCeEEEEE-ccC----CC-------------CCCCCccccCEEEECCCCCCh
Confidence 5778877554443 456777765 567665421 100 00 000113568999999994331
Q ss_pred ---------------HHHHHhcCCCCCcEEEEcCCC
Q 008048 346 ---------------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 346 ---------------L~AAr~~~~~~~PILGINlG~ 366 (579)
....+.+...++||+||-+|.
T Consensus 59 ~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 59 RTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred hhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 223344445789999999986
No 129
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=63.21 E-value=37 Score=34.46 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+.++|++........ ++++.|.+.++..+.+ .+...+ .. ..... +..+. .....++...+|+||+-||
T Consensus 191 ~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~g~~~~~-~~--~~ni~-~~~~~-~~~~~~~m~~ad~vIs~~G 259 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG------DLIEALKALPDYQFIVFGPNAAD-PR--PGNIH-VRPFS-TPDFAELMAAADLVISKGG 259 (318)
T ss_pred CCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEEcCCccc-cc--CCCEE-EeecC-hHHHHHHHHhCCEEEECCC
Confidence 356687777776654 5566666544333333 322111 11 11111 11111 1345566788999999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEcC
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINl 364 (579)
-+|+.-++.. ++|++-|-.
T Consensus 260 ~~t~~Ea~~~----g~P~l~ip~ 278 (318)
T PF13528_consen 260 YTTISEALAL----GKPALVIPR 278 (318)
T ss_pred HHHHHHHHHc----CCCEEEEeC
Confidence 9999988753 568877754
No 130
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=63.01 E-value=6.2 Score=49.19 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL 364 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl 364 (579)
-++|.+|++|||||+-.|+.+.. +..++|+||.-
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPK 233 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPK 233 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeE
Confidence 46899999999999988876543 45589999953
No 131
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=62.59 E-value=26 Score=37.54 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=50.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~--ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
.++++||+-+.-.. .+..++.+.|.+ .++.+. +-+.... .+....+... .....+ -..+.|+||.+|
T Consensus 31 ~~~~livtd~~~~~--~~~~~v~~~L~~-~gi~~~~~~~~~~e~-----~~~~~~v~~~--~~~~~~~~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVAP--LYLEKLRASLEA-AGFEVDVVVLPDGEQ-----YKSLETLEKI--YDALLEAGLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHh-cCCceEEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCCEEEEEc
Confidence 47899999654433 467888888875 455433 2111100 0000000000 001111 123569999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 341 GDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 341 GDGTlL~AAr~~~---~~~~PILGINl 364 (579)
| |+++.+++.++ ...+|++-|.+
T Consensus 101 G-Gsv~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 101 G-GVIGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred C-cHHHHHHHHHHHHhcCCCCEEEcCc
Confidence 8 78998888764 45788888876
No 132
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=62.41 E-value=16 Score=34.91 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCccEEEEEeCc------hHHHHHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGD------GTVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGD------GTlL~AAr~~~~~~~PILGINlG~ 366 (579)
..++|.||+.||= +..+.+.+.+....+|||||-+|.
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 5789999999993 455566677666789999999986
No 133
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=62.02 E-value=35 Score=36.74 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=41.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-.. .....++.+.|.+ .++++.+-..+.. ++..+.+. .-.+. ...++|+||.|||
T Consensus 26 ~~~~lvvt~~~~~~-~g~~~~v~~~L~~-~g~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK-LGLLDKVLEALEG-AGIEYAVYDGVPP-----DPTIENVE-----AGLALYRENGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh-cccHHHHHHHHHh-cCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 37999998654222 2356788888875 4666554222111 00000000 00011 1357899999999
Q ss_pred hHHHHHHHhc
Q 008048 343 GTVLWAASIF 352 (579)
Q Consensus 343 GTlL~AAr~~ 352 (579)
|.++.+++.+
T Consensus 93 GS~~D~aK~i 102 (374)
T cd08189 93 GSVIDCAKAI 102 (374)
T ss_pred ccHHHHHHHH
Confidence 6788777654
No 134
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=61.46 E-value=24 Score=34.47 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL----------~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||-++.. ...+.+...+.||+||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 4689999999988863 22333334678999999886
No 135
>PRK05380 pyrG CTP synthetase; Validated
Probab=61.01 E-value=27 Score=40.13 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=28.0
Q ss_pred hCCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 329 LHTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 329 l~~~~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
....+|-||.-||=|. .+.+++.+...++|+|||-+|-
T Consensus 340 ~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 340 LLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGM 382 (533)
T ss_pred HhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchHH
Confidence 3567899999998432 4456666666789999998874
No 136
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.94 E-value=26 Score=37.20 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=49.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+.-. ..+..++.+.|. ..++.+.+-..+ +..+.+. .-.+. ...++|+||.+|| |
T Consensus 24 ~~~liv~d~~~~--~~~~~~l~~~L~-~~~~~~~~~~~~--------p~~~~v~-----~~~~~~~~~~~D~iIavGG-G 86 (347)
T cd08172 24 KRPLIVTGPRSW--AAAKPYLPESLA-AGEAFVLRYDGE--------CSEENIE-----RLAAQAKENGADVIIGIGG-G 86 (347)
T ss_pred CeEEEEECHHHH--HHHHHHHHHHHh-cCeEEEEEeCCC--------CCHHHHH-----HHHHHHHhcCCCEEEEeCC-c
Confidence 688998865432 345677777774 345544332211 0000000 00111 1257899999999 7
Q ss_pred HHHHHHHhcCC-CCCcEEEEcC
Q 008048 344 TVLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~~-~~~PILGINl 364 (579)
+++.+++.+.. ..+|++.|..
T Consensus 87 s~~D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 87 KVLDTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHHHHhCCCEEEecC
Confidence 99999988752 3679998876
No 137
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=60.87 E-value=18 Score=36.85 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=26.0
Q ss_pred CCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
..++|.||.-||-|+ .+.+.+.....++|++||-+|.
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHH
Confidence 456899999998532 2234444445689999999874
No 138
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=60.60 E-value=86 Score=29.69 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=54.9
Q ss_pred EEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 266 TVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
+|+++... ..+-...+...+.+++.+ .|+++.+-..-...- . ...-+. ....++|.||+.+.+.
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~-~g~~l~~~~~~~~~~-----------~--~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKA-AGYQVLLANSQNDAE-----------K--QLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCHH-----------H--HHHHHHHHHHcCCCEEEEecCCC
Confidence 36777754 355666777777788875 577765543211000 0 000111 1235799999999998
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCC
Q 008048 344 TVLWAASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 344 TlL~AAr~~~~~~~PILGINlG~L 367 (579)
+.+..+..+....+|++.++...-
T Consensus 67 ~~~~~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 67 TAPTIVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred cchhHHHHhhhcCCCEEEeccCCC
Confidence 777666777778899999987643
No 139
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=60.04 E-value=28 Score=36.28 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=25.6
Q ss_pred HhhhCCCccEEEEEeCchHH-----H-------HHHHhcC--CCCCcEEEEcCCC
Q 008048 326 ILLLHTKVDLVVTLGGDGTV-----L-------WAASIFK--GPVPPIVPFSLGS 366 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTl-----L-------~AAr~~~--~~~~PILGINlG~ 366 (579)
+.++...+|-||+.||.-.+ + +.+.... +...||+|+-+|.
T Consensus 48 l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~ 102 (273)
T cd01747 48 YDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF 102 (273)
T ss_pred HHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHH
Confidence 44556778999999996222 2 2222221 2238999999885
No 140
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=58.83 E-value=25 Score=37.66 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=37.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++++||+.+.- ....+..++.+.|.+ ....++ ..+.. ++..+.+... .....+...++|+||.||| |+
T Consensus 24 ~r~lvVtd~~~-~~~g~~~~v~~~L~~-~~~~~~--~~v~~-----~pt~~~v~~~--~~~~~~~~~~~D~IIaiGG-GS 91 (355)
T TIGR03405 24 RRVVVVTFPEA-RALGLARRLEALLGG-RLAALI--DDVAP-----NPDVAQLDGL--YARLWGDEGACDLVIALGG-GS 91 (355)
T ss_pred CeEEEEECcch-hhcchHHHHHHHhcc-CcEEEe--CCCCC-----CcCHHHHHHH--HHHHHhcCCCCCEEEEeCC-cc
Confidence 79999996542 123456778888753 233332 11110 0000000000 0011111234999999999 68
Q ss_pred HHHHHHhc
Q 008048 345 VLWAASIF 352 (579)
Q Consensus 345 lL~AAr~~ 352 (579)
++.+++.+
T Consensus 92 viD~aK~i 99 (355)
T TIGR03405 92 VIDTAKVL 99 (355)
T ss_pred HHHHHHHH
Confidence 88777653
No 141
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=58.63 E-value=8.5 Score=45.81 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=37.3
Q ss_pred CCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEcC-------C---CCccCcCCCcchH
Q 008048 331 TKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL-------G---SLGFMTPFHSEHY 378 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~----------------------~~~~~PILGINl-------G---~LGFLt~~~~edi 378 (579)
.++|.+|++|||||+-.|.... ....++|+||.- | ++||-|.+ +.+
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfdTAl--~~i 173 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSAL--HRI 173 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHHHHH--HHH
Confidence 5799999999999998776321 123679999953 3 68887764 334
Q ss_pred HHHHHHHHc
Q 008048 379 KDYLDSVLR 387 (579)
Q Consensus 379 ~~~L~~il~ 387 (579)
-++++++..
T Consensus 174 ~eaId~i~~ 182 (762)
T cd00764 174 CEVVDAITT 182 (762)
T ss_pred HHHHHHHHH
Confidence 455555543
No 142
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=58.60 E-value=25 Score=37.10 Aligned_cols=87 Identities=24% Similarity=0.338 Sum_probs=46.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-.. ..+..++.+.|.+. +.+.+-..+.. ++..+.+. .-.+ -...++|+||.+||
T Consensus 22 ~~~~lvv~~~~~~~-~g~~~~v~~~l~~~--~~~~~~~~v~~-----~p~~~~v~-----~~~~~~~~~~~d~IiaiGG- 87 (332)
T cd08180 22 NKRVLIVTDPFMVK-SGMLDKVTDHLDSS--IEVEIFSDVVP-----DPPIEVVA-----KGIKKFLDFKPDIVIALGG- 87 (332)
T ss_pred CCeEEEEeCchhhh-CccHHHHHHHHHhc--CcEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEECC-
Confidence 37899998543221 12567788888643 44332211110 00000000 0001 11356899999999
Q ss_pred hHHHHHHHhc--------CCCCCcEEEEcC
Q 008048 343 GTVLWAASIF--------KGPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~--------~~~~~PILGINl 364 (579)
|.++.+++.+ ....+|++.|..
T Consensus 88 Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 88 GSAIDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred chHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 5788877742 123479999986
No 143
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=58.42 E-value=8.7 Score=42.73 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.3
Q ss_pred CCccEEEEEeCchHHHHH
Q 008048 331 TKVDLVVTLGGDGTVLWA 348 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~A 348 (579)
..+|-+|++||||-|=-.
T Consensus 216 ~~yDGiv~VGGDG~FnEi 233 (516)
T KOG1115|consen 216 HTYDGIVAVGGDGFFNEI 233 (516)
T ss_pred hhcccEEEecCchhHHHH
Confidence 468999999999976433
No 144
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=57.27 E-value=69 Score=31.56 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-c-hhHhhhh-----cCCcccccccccchHHHhhhCCCccEE
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-R-VRAELLT-----ESSYFSFVQTWKDEKEILLLHTKVDLV 336 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~-~-va~~l~~-----~~~~~~~i~~~~~~~~~~~l~~~~DLV 336 (579)
+..|+.+.+.....-.+.+.++++.+.+.+++.+.+-- . ....+.. ......+.. +.+..++..+...+|++
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~di~ 298 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLG-RVPKEELPELLAAADVG 298 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeC-CCChHHHHHHHHhhCee
Confidence 44566666655444445555555555543355554421 1 1111110 001111122 22234556667889999
Q ss_pred EEEeCchHH---------HHHHHhcCCCCCcEEEEcCC---------CCccCcCC-CcchHHHHHHHHHcC
Q 008048 337 VTLGGDGTV---------LWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 337 IvLGGDGTl---------L~AAr~~~~~~~PILGINlG---------~LGFLt~~-~~edi~~~L~~il~G 388 (579)
|.....+++ +-|+ ..++||++-+.| ..|++.+. +++++.+.|.+++..
T Consensus 299 i~~~~~~~~~~~~~p~~~~Ea~----~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 299 LVPLKPGPAFEGVSPSKLFEYM----AAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDD 365 (394)
T ss_pred EEeccCcccccccCchHHHHHH----HCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhC
Confidence 987666543 3333 356799988764 35776664 678888888888743
No 145
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=56.72 E-value=39 Score=36.00 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=49.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEE--EEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNI--YVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V--~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
++++||+-+... .....++.+.|.+. ++.+ ++-.. + +..+.+. .-.+.. ..++|+||.+||
T Consensus 23 ~~~liv~~~~~~--~~~~~~v~~~l~~~-~i~~~~~~~~~-------~-p~~~~v~-----~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 23 SKVAVVGGKTVL--KKSRPRFEAALAKS-IIVVDVIVFGG-------E-CSTEEVV-----KALCGAEEQEADVIIGVGG 86 (349)
T ss_pred CeEEEEEChHHH--HHHHHHHHHHHHhc-CCeeEEEEcCC-------C-CCHHHHH-----HHHHHHHhcCCCEEEEecC
Confidence 678888854432 24568888888753 5532 22110 0 0000000 001111 247899999999
Q ss_pred chHHHHHHHhcCC-CCCcEEEEcC
Q 008048 342 DGTVLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 342 DGTlL~AAr~~~~-~~~PILGINl 364 (579)
|+++.+++.+.. ..+|++-|..
T Consensus 87 -Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 87 -GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred -cHHHHHHHHHHHHcCCCEEEeCC
Confidence 799999988753 4689999987
No 146
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=56.10 E-value=39 Score=35.61 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=26.8
Q ss_pred CccEEEEEeCchHHHHHHHhcC-CCCCcEEEEcC
Q 008048 332 KVDLVVTLGGDGTVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 332 ~~DLVIvLGGDGTlL~AAr~~~-~~~~PILGINl 364 (579)
+.|+||.+|| |+++.+++.++ ...+|++-|.+
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecC
Confidence 6899999999 79999998875 34789988876
No 147
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=54.75 E-value=36 Score=37.34 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=41.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-.. ...+.++.+.|.+ .++++.+-..+.. + +..+.+. .-.+. ...++|+||.|||
T Consensus 23 ~~~vlivt~~~~~~-~g~~~~v~~~L~~-~gi~~~~f~~v~~----~-p~~~~v~-----~~~~~~~~~~~D~IIaiGG- 89 (414)
T cd08190 23 ARRVCLVTDPNLAQ-LPPVKVVLDSLEA-AGINFEVYDDVRV----E-PTDESFK-----DAIAFAKKGQFDAFVAVGG- 89 (414)
T ss_pred CCeEEEEECcchhh-cchHHHHHHHHHH-cCCcEEEeCCCCC----C-cCHHHHH-----HHHHHHHhcCCCEEEEeCC-
Confidence 37999998765322 2356889999975 4666543211111 0 0000000 00111 1357899999999
Q ss_pred hHHHHHHHhc
Q 008048 343 GTVLWAASIF 352 (579)
Q Consensus 343 GTlL~AAr~~ 352 (579)
|.++-+++.+
T Consensus 90 GSviD~AKai 99 (414)
T cd08190 90 GSVIDTAKAA 99 (414)
T ss_pred ccHHHHHHHH
Confidence 5777776554
No 148
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=54.74 E-value=39 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCccEEEEEeCchHHHH----------HHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVLW----------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~----------AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||-++... ..+.+...++||+||-.|.
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH
Confidence 46899999999887642 2344556679999999885
No 149
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=54.68 E-value=20 Score=41.41 Aligned_cols=69 Identities=30% Similarity=0.533 Sum_probs=47.0
Q ss_pred EEEEEeCchHHHHHHHh---cC-CCCCcE--EEEcCC-----CCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEe
Q 008048 335 LVVTLGGDGTVLWAASI---FK-GPVPPI--VPFSLG-----SLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVI 403 (579)
Q Consensus 335 LVIvLGGDGTlL~AAr~---~~-~~~~PI--LGINlG-----~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~ 403 (579)
-|++-|||||+=++.+. +. ...||| |+...| .||.=-.+.-|-+.+.|..+..|...--.|.+|.++-.
T Consensus 419 RILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpN 498 (1004)
T KOG0782|consen 419 RILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPN 498 (1004)
T ss_pred EEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCC
Confidence 37789999997555544 33 234554 444443 34444445556788889999999988888999988754
No 150
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=54.66 E-value=25 Score=41.07 Aligned_cols=68 Identities=25% Similarity=0.473 Sum_probs=46.1
Q ss_pred EEEEEeCchHHHHHHHhcCC-------CCCcEEEEcCCC-------CccCcCCCcch--HHHHHHHHHcCCceEEEEeeE
Q 008048 335 LVVTLGGDGTVLWAASIFKG-------PVPPIVPFSLGS-------LGFMTPFHSEH--YKDYLDSVLRGPISITLRNRL 398 (579)
Q Consensus 335 LVIvLGGDGTlL~AAr~~~~-------~~~PILGINlG~-------LGFLt~~~~ed--i~~~L~~il~G~y~Ie~R~rL 398 (579)
-|++-|||||+=++...+.. +.|||-=+-+|+ ||-=..++.++ +...|+++...+...-.|.-+
T Consensus 326 riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v 405 (634)
T KOG1169|consen 326 RILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKV 405 (634)
T ss_pred eEEEecCCCcchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeE
Confidence 79999999997665543322 356664444543 34334455555 889999999998888888877
Q ss_pred EEEE
Q 008048 399 QCHV 402 (579)
Q Consensus 399 ~v~V 402 (579)
.+.-
T Consensus 406 ~v~~ 409 (634)
T KOG1169|consen 406 LVEP 409 (634)
T ss_pred Eeec
Confidence 7654
No 151
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=54.56 E-value=36 Score=33.27 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCccEEEEEeCchHHHH----------HHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVLW----------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~----------AAr~~~~~~~PILGINlG~ 366 (579)
.++|.+|+-||.++... ..+.+...+.||+||-.|.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 46899999999998732 2233345678999999986
No 152
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.50 E-value=10 Score=40.59 Aligned_cols=36 Identities=33% Similarity=0.316 Sum_probs=27.7
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl 364 (579)
++....++||++|-|=|.+ |+..+...++||+||--
T Consensus 262 el~~~~~lvvTvGDDTT~v-agdIl~RfgipiiGItD 297 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEV-AGDILYRFGIPIIGITD 297 (367)
T ss_pred HhhccCceEEEEcCcchhH-HHHHHHhcCCcEEeccc
Confidence 4567788999999996655 55566678999999743
No 153
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=54.48 E-value=1.3e+02 Score=27.97 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=51.1
Q ss_pred EEEEEEcCC--ChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 008048 266 TVVILTKPN--SNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 341 (579)
Q Consensus 266 ~V~IV~Kp~--~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGG 341 (579)
+||++.-.. .+....+...+...+.+. .++++.+...-...- . ....+.. ...++|.||..+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPE-------R------ALEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHH-------H------HHHHHHHHHHcCCCEEEecCC
Confidence 366666433 555666666666666641 356655432211000 0 0001111 2347999999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEcCCCC
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINlG~L 367 (579)
+.+...+...+....+|++.++.+.-
T Consensus 68 ~~~~~~~~~~~~~~~ip~v~~~~~~~ 93 (269)
T cd01391 68 SSSALAVVELAAAAGIPVVSLDATAP 93 (269)
T ss_pred CHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 88776566666677899999987543
No 154
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=54.16 E-value=46 Score=32.69 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=54.0
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHH-hhhCCCccEEEEEeCch
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI-LLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~-~~l~~~~DLVIvLGGDG 343 (579)
+||+|.+ ..++-...+.+.+.+.+++ .|+++.+...... .... ..-+ ..+..++|-+|+.+.+.
T Consensus 1 ~~g~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vdgiIi~~~~~ 66 (273)
T cd06309 1 TVGFSQVGAESPWRTAETKSIKDAAEK-RGFDLKFADAQQK-QENQ------------ISAIRSFIAQGVDVIILAPVVE 66 (273)
T ss_pred CeeeccCCCCCHHHHHHHHHHHHHHHh-cCCEEEEeCCCCC-HHHH------------HHHHHHHHHcCCCEEEEcCCcc
Confidence 3677766 6777778888999999986 5888876432110 0000 0001 11245799999988876
Q ss_pred HHH-HHHHhcCCCCCcEEEEcCC
Q 008048 344 TVL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 344 TlL-~AAr~~~~~~~PILGINlG 365 (579)
..+ ...+.+...++|++.+|..
T Consensus 67 ~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 67 TGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred ccchHHHHHHHHCCCCEEEEecC
Confidence 532 3345555678999999864
No 155
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=54.05 E-value=46 Score=36.50 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~---~~~~PILGINl 364 (579)
++.|+||.+|| |+++.++..++ ..++|++-|.+
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45679999998 78898877663 34678888876
No 156
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=53.80 E-value=24 Score=33.78 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=27.0
Q ss_pred CCCccEEEEEeCchHH-----------HHHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGDGTV-----------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGDGTl-----------L~AAr~~~~~~~PILGINlG~ 366 (579)
..++|.||.-||-++. +...+.+.....||+||-.|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 4579999999997654 233344445678999999996
No 157
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=53.77 E-value=22 Score=34.31 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=25.6
Q ss_pred ccEEEEEeCchHH-----HHHHHhcCCCCCcEEEEcCCC
Q 008048 333 VDLVVTLGGDGTV-----LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 333 ~DLVIvLGGDGTl-----L~AAr~~~~~~~PILGINlG~ 366 (579)
+|.||..||.+.. ....+.+....+||+||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 5699999998653 344555556789999999986
No 158
>PLN02834 3-dehydroquinate synthase
Probab=53.69 E-value=40 Score=37.57 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccch-HHHh-hhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDE-KEIL-LLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~-~~~~-~l~~~~DLVIvLGG 341 (579)
.++++||+.+.-... +..++.+.|.+ .++++.+...+... ....+. +...... .... .-.++.|+||.|||
T Consensus 100 g~rvlIVtD~~v~~~--~~~~v~~~L~~-~g~~~~v~~~v~~~-gE~~ks---l~~v~~~~~~l~~~~~dr~~~VIAiGG 172 (433)
T PLN02834 100 GKRVLVVTNETVAPL--YLEKVVEALTA-KGPELTVESVILPD-GEKYKD---METLMKVFDKALESRLDRRCTFVALGG 172 (433)
T ss_pred CCEEEEEECccHHHH--HHHHHHHHHHh-cCCceEEEEEEecC-CcCCCC---HHHHHHHHHHHHhcCCCcCcEEEEECC
Confidence 489999996554332 66778888875 35533221100000 000000 0000000 0011 11233459999999
Q ss_pred chHHHHHHHhcC---CCCCcEEEEcCC
Q 008048 342 DGTVLWAASIFK---GPVPPIVPFSLG 365 (579)
Q Consensus 342 DGTlL~AAr~~~---~~~~PILGINlG 365 (579)
|+++.+++.++ ..++|++-|.+.
T Consensus 173 -Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 173 -GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred -hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 68888887542 457888777663
No 159
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=53.04 E-value=98 Score=34.00 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=69.0
Q ss_pred eecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHh-hhhcCCcccccccccchHHHhhhCCCccEE
Q 008048 258 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAE-LLTESSYFSFVQTWKDEKEILLLHTKVDLV 336 (579)
Q Consensus 258 l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~-l~~~~~~~~~i~~~~~~~~~~~l~~~~DLV 336 (579)
..|...-+.+..++=..-....++.+.+++-+.+ -+..|.+...-++. .......+ ++..|. +...+...+|+|
T Consensus 230 ~~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~-l~~~vi~~~~~~~~~~~~~p~n~-~v~~~~---p~~~~l~~ad~v 304 (406)
T COG1819 230 PYWIPADRPIVYVSLGTVGNAVELLAIVLEALAD-LDVRVIVSLGGARDTLVNVPDNV-IVADYV---PQLELLPRADAV 304 (406)
T ss_pred cchhcCCCCeEEEEcCCcccHHHHHHHHHHHHhc-CCcEEEEeccccccccccCCCce-EEecCC---CHHHHhhhcCEE
Confidence 3443333444444433322226777777777765 35555554322111 00000000 122222 234567889999
Q ss_pred EEEeCchHHHHHHHhcCCCCCcEEEEcCCC-------------CccCcC---CCcchHHHHHHHHHcCC
Q 008048 337 VTLGGDGTVLWAASIFKGPVPPIVPFSLGS-------------LGFMTP---FHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 337 IvLGGDGTlL~AAr~~~~~~~PILGINlG~-------------LGFLt~---~~~edi~~~L~~il~G~ 389 (579)
|+-||=||+..+.+ .++|++.+-.+. .|.... .+.+.+.++|.+++...
T Consensus 305 I~hGG~gtt~eaL~----~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 305 IHHGGAGTTSEALY----AGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred EecCCcchHHHHHH----cCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 99999999999885 357988886532 343333 45667778888887754
No 160
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=52.24 E-value=29 Score=38.98 Aligned_cols=98 Identities=20% Similarity=0.402 Sum_probs=57.7
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
-|++||||+-|....+ +.|++-+..+ +.++|++-|.... +++.....++. ...-.-..++|++|+-=|
T Consensus 134 ~p~~IGVITS~tgAai----rDIl~~~~rR~P~~~viv~pt~VQ---G~~A~~eIv~a----I~~an~~~~~DvlIVaRG 202 (440)
T COG1570 134 FPKKIGVITSPTGAAL----RDILHTLSRRFPSVEVIVYPTLVQ---GEGAAEEIVEA----IERANQRGDVDVLIVARG 202 (440)
T ss_pred CCCeEEEEcCCchHHH----HHHHHHHHhhCCCCeEEEEecccc---CCCcHHHHHHH----HHHhhccCCCCEEEEecC
Confidence 3899999999987654 5666666643 6688888664321 11111000000 001112345999999988
Q ss_pred chHH--HH------HHHhcCCCCCcEEEEcCCCCccCcCCCc
Q 008048 342 DGTV--LW------AASIFKGPVPPIVPFSLGSLGFMTPFHS 375 (579)
Q Consensus 342 DGTl--L~------AAr~~~~~~~PILGINlG~LGFLt~~~~ 375 (579)
=|.+ |+ .+|.+..+.+||+. -+|.=|++..
T Consensus 203 GGSiEDLW~FNdE~vaRAi~~s~iPvIS----AVGHEtD~tL 240 (440)
T COG1570 203 GGSIEDLWAFNDEIVARAIAASRIPVIS----AVGHETDFTL 240 (440)
T ss_pred cchHHHHhccChHHHHHHHHhCCCCeEe----ecccCCCccH
Confidence 8887 33 34666778899987 3444444443
No 161
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.59 E-value=94 Score=31.73 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=42.6
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-----------------CCCccCcCC---CcchHHHHHHH
Q 008048 325 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-----------------GSLGFMTPF---HSEHYKDYLDS 384 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-----------------G~LGFLt~~---~~edi~~~L~~ 384 (579)
++.++...+|++|+-+|-+|++-|.. .++|++.+.. +..|++.+. +++++.++|..
T Consensus 245 ~~~~~l~~ad~~v~~sg~~t~~Eam~----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ 320 (350)
T cd03785 245 DMAAAYAAADLVISRAGASTVAELAA----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLE 320 (350)
T ss_pred hHHHHHHhcCEEEECCCHhHHHHHHH----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHH
Confidence 45567788999999888677666663 4678887643 235777663 67888888888
Q ss_pred HHcC
Q 008048 385 VLRG 388 (579)
Q Consensus 385 il~G 388 (579)
+++.
T Consensus 321 ll~~ 324 (350)
T cd03785 321 LLSD 324 (350)
T ss_pred HhcC
Confidence 8763
No 162
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=50.51 E-value=84 Score=31.43 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=24.6
Q ss_pred CccEEEEEeCc----------hHHHHHHHhcCCCCCcEEEEcCCC
Q 008048 332 KVDLVVTLGGD----------GTVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 332 ~~DLVIvLGGD----------GTlL~AAr~~~~~~~PILGINlG~ 366 (579)
.+|.+|+.||= +........+....+|||||=+|.
T Consensus 45 ~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~ 89 (198)
T COG0518 45 SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGH 89 (198)
T ss_pred CCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhH
Confidence 45999999995 333444444445556799999997
No 163
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=49.70 E-value=1.6e+02 Score=27.90 Aligned_cols=85 Identities=13% Similarity=0.010 Sum_probs=52.9
Q ss_pred EEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 267 VVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 267 V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
|+++... +++-...+...+.+.+.+ .++.+.+...-... . ... ..-...+..++|.+|+.+.|.+-
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~--~-----~~~-----~~~~~~~~~~~d~iii~~~~~~~ 68 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAARE-AGYSVLLCNSDEDP--E-----KER-----EALELLLSRRVDGIILAPSRLDD 68 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCCH--H-----HHH-----HHHHHHHHcCcCEEEEecCCcch
Confidence 5666643 566667777778888865 46766553221100 0 000 00001224579999999999888
Q ss_pred HHHHHhcCCCCCcEEEEcCC
Q 008048 346 LWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG 365 (579)
+. .+.+...++|++.++..
T Consensus 69 ~~-~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 69 EL-LEELAALGIPVVLVDRP 87 (264)
T ss_pred HH-HHHHHHcCCCEEEeccc
Confidence 77 66667788999999875
No 164
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.49 E-value=78 Score=31.36 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=64.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-chhH-hhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-RVRA-ELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~-~va~-~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+..++.+.+.....-.+.+.++++.|.+...+.+.+-. .... .+........+.. +.+..++..+...+|++|.-..
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~~d~~l~~s~ 275 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLG-FLDGEELAAAYASADVFVFPSR 275 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEe-ccCHHHHHHHHHhCCEEEECcc
Confidence 45677777765444455566666666542345444422 1111 1111111111111 1123456667788999997765
Q ss_pred c----hHHHHHHHhcCCCCCcEEEEcCC---------CCccCcC-CCcchHHHHHHHHHcC
Q 008048 342 D----GTVLWAASIFKGPVPPIVPFSLG---------SLGFMTP-FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 342 D----GTlL~AAr~~~~~~~PILGINlG---------~LGFLt~-~~~edi~~~L~~il~G 388 (579)
. .|+|-|. ..++||++-+.| ..|++.+ -+.+++.+.|..++..
T Consensus 276 ~e~~~~~~lEa~----a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (364)
T cd03814 276 TETFGLVVLEAM----ASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLAD 332 (364)
T ss_pred cccCCcHHHHHH----HcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcC
Confidence 5 3455443 346799988875 4566554 3455577788777663
No 165
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=49.36 E-value=53 Score=32.93 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCccEEEEEeCchHHH------------HHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVL------------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL------------~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.|| ++|-|.+- ...+.+.....|||||=+|.
T Consensus 38 ~~~d~iI-lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~ 84 (210)
T CHL00188 38 AQVHALV-LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGL 84 (210)
T ss_pred hhCCEEE-ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHH
Confidence 3478877 67755432 23333334578999999986
No 166
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=49.07 E-value=64 Score=31.66 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCccEEEEEeCc--hH-------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGD--GT-------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGD--GT-------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.+|.-||- +. +....+.+...+.||+||=.|.
T Consensus 37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~ 81 (200)
T PRK13143 37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGM 81 (200)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 468998887752 22 2334455556678999998875
No 167
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=48.21 E-value=96 Score=33.55 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE--EEEccchhHhhhhcCCcccccccccchHHHhhh-CCCcc---EEE
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLN--IYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVD---LVV 337 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~--V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~D---LVI 337 (579)
.++++||+.++-... +..++.+.|.+ .+++ +++-+.... .+..+.+. .-...+ ..++| +||
T Consensus 23 ~~rvlvVtd~~v~~~--~~~~l~~~L~~-~g~~~~~~~~~~~e~-----~k~~~~v~-----~~~~~~~~~~~dr~~~II 89 (355)
T cd08197 23 ADKYLLVTDSNVEDL--YGHRLLEYLRE-AGAPVELLSVPSGEE-----HKTLSTLS-----DLVERALALGATRRSVIV 89 (355)
T ss_pred CCeEEEEECccHHHH--HHHHHHHHHHh-cCCceEEEEeCCCCC-----CCCHHHHH-----HHHHHHHHcCCCCCcEEE
Confidence 378999987654332 56788888875 3443 222111100 00000000 000111 23455 999
Q ss_pred EEeCchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 338 TLGGDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 338 vLGGDGTlL~AAr~~~---~~~~PILGINl 364 (579)
.+|| |+++.+++.++ ..++|++-|.+
T Consensus 90 AvGG-Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 90 ALGG-GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred EECC-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 9998 79998887764 24689988887
No 168
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.15 E-value=37 Score=33.12 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCccEEEEEeC-c-hH---------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGG-D-GT---------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGG-D-GT---------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.=|| + ++ +....+.+...+.||+||-.|.
T Consensus 36 ~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 36 AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 45899885442 2 22 1233333335678999999984
No 169
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=45.57 E-value=67 Score=33.08 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC
Q 008048 325 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl 364 (579)
.+.++...+|++|+-|| +|+.-++. .++|.+.|..
T Consensus 234 ~m~~lm~~aDl~Is~~G-~T~~E~~a----~g~P~i~i~~ 268 (279)
T TIGR03590 234 NMAELMNEADLAIGAAG-STSWERCC----LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHCCEEEECCc-hHHHHHHH----cCCCEEEEEe
Confidence 45566788999999999 99887664 3568877654
No 170
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=45.39 E-value=31 Score=37.58 Aligned_cols=76 Identities=24% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++|+|+=--- -..++++|.+ .|..+.+-+.... ..++.. .++|.||.-||.|
T Consensus 177 ~~~I~viD~G~-------k~nivr~L~~-~G~~v~vvp~~~~-----------------~~~i~~--~~~DGIvLSgGPg 229 (360)
T PRK12564 177 KYKVVAIDFGV-------KRNILRELAE-RGCRVTVVPATTT-----------------AEEILA--LNPDGVFLSNGPG 229 (360)
T ss_pred CCEEEEEeCCc-------HHHHHHHHHH-CCCEEEEEeCCCC-----------------HHHHHh--cCCCEEEEeCCCC
Confidence 35777775421 1358888886 4666655331100 111211 2589999999976
Q ss_pred HH------HHHHHhcCCCCCcEEEEcCCC
Q 008048 344 TV------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 Tl------L~AAr~~~~~~~PILGINlG~ 366 (579)
.. +..++.+....+||+||-+|.
T Consensus 230 dp~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 230 DPAALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred ChHHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 53 344555555679999999996
No 171
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.35 E-value=1.2e+02 Score=30.60 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=54.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~-gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
+++|+||=+.++ .+..+++||.+.+ .+.|+....... ..++ ..++|.||.==|=
T Consensus 1 ~~~IL~IDNyDS-----FtyNLv~yl~~lg~~v~V~rnd~~~~------------------~~~~--~~~pd~iviSPGP 55 (191)
T COG0512 1 MMMILLIDNYDS-----FTYNLVQYLRELGAEVTVVRNDDISL------------------ELIE--ALKPDAIVISPGP 55 (191)
T ss_pred CceEEEEECccc-----hHHHHHHHHHHcCCceEEEECCccCH------------------HHHh--hcCCCEEEEcCCC
Confidence 357888888664 4678999998632 234443321111 0111 2346777776665
Q ss_pred hH------HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCc
Q 008048 343 GT------VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 343 GT------lL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y 390 (579)
|| .+.+.+.+ ...+|||||-+|+ ++|-..+-|+.
T Consensus 56 G~P~d~G~~~~~i~~~-~~~~PiLGVCLGH-------------Qai~~~fGg~V 95 (191)
T COG0512 56 GTPKDAGISLELIRRF-AGRIPILGVCLGH-------------QAIAEAFGGKV 95 (191)
T ss_pred CChHHcchHHHHHHHh-cCCCCEEEECccH-------------HHHHHHhCCEE
Confidence 55 67777887 4568999999998 55666665543
No 172
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=45.11 E-value=52 Score=37.31 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred hCCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 329 LHTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 329 l~~~~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
+...+|-|++=||=|. ++.|+++.....+|.|||-+|-
T Consensus 360 ~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGm 402 (585)
T KOG2387|consen 360 KLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGM 402 (585)
T ss_pred HhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhh
Confidence 4567999999999764 6778888888999999999884
No 173
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=43.84 E-value=1.3e+02 Score=29.70 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=39.4
Q ss_pred HHHhhhCCCccEEEEEeCc---h-HHHHHHHhcCCCCCcEEEEcCC---------CCccCcCCCcchHHHHHHHHHcC
Q 008048 324 KEILLLHTKVDLVVTLGGD---G-TVLWAASIFKGPVPPIVPFSLG---------SLGFMTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 324 ~~~~~l~~~~DLVIvLGGD---G-TlL~AAr~~~~~~~PILGINlG---------~LGFLt~~~~edi~~~L~~il~G 388 (579)
.++..+...+|++|....- | |++-+. ..++||++.+.| .-||+.+.+..++.++|..+++.
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~----~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~ 343 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAM----AAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQD 343 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHH----HcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhC
Confidence 3455667789998865432 2 333333 347899998875 35777765444788888888764
No 174
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=43.46 E-value=40 Score=36.76 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=44.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
.+|+++=- .-. ..++++|.+ .|..+.+-+.... ..++.. ..+|.||.-||-|.
T Consensus 174 ~~i~viD~-G~k------~ni~~~L~~-~G~~v~vvp~~~~-----------------~~~i~~--~~pDGIiLSgGPgd 226 (358)
T TIGR01368 174 KRVVVIDF-GVK------QNILRRLVK-RGCEVTVVPYDTD-----------------AEEIKK--YNPDGIFLSNGPGD 226 (358)
T ss_pred cEEEEEeC-CcH------HHHHHHHHH-CCCEEEEEcCCCC-----------------HHHHHh--hCCCEEEECCCCCC
Confidence 46777743 211 358889986 4666655332110 111211 24699999999654
Q ss_pred H------HHHHHhcCCCCCcEEEEcCCC
Q 008048 345 V------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 345 l------L~AAr~~~~~~~PILGINlG~ 366 (579)
. +..++.+.. .+||+||-+|.
T Consensus 227 p~~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 227 PAAVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 3 444555555 79999999997
No 175
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=43.31 E-value=51 Score=39.30 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCccEEEEEeCchHH-----HHHHHhcC----CCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTV-----LWAASIFK----GPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTl-----L~AAr~~~----~~~~PILGINlG~ 366 (579)
.++|.||+-||-|.. ...++.+. ...+|||||-+|.
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 468999999999974 22222222 2359999999985
No 176
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=43.28 E-value=60 Score=34.98 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.7
Q ss_pred CccEEEEEeCchHHHHHHHhc
Q 008048 332 KVDLVVTLGGDGTVLWAASIF 352 (579)
Q Consensus 332 ~~DLVIvLGGDGTlL~AAr~~ 352 (579)
++|+||.+|| |..+.+++.+
T Consensus 81 ~~D~IIaiGG-GS~iD~AKai 100 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAV 100 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHH
Confidence 7999999999 6788877665
No 177
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.24 E-value=65 Score=31.47 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=66.7
Q ss_pred eeEeEEeccCCCcceeeeEEEeCCeeeEEEe-eceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCC-----C--
Q 008048 419 VLNEVTIDRGISSYLTNLECYCDNSFVTCVQ-GDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHS-----L-- 490 (579)
Q Consensus 419 ALNDVvI~rg~~s~mi~leV~IDge~v~~~r-gDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHs-----L-- 490 (579)
.-+|+-|..+...++ =.|+.+|+.+.+.+ .||+..-|+-|.+=--.+ +=+|..++++-....|+- .
T Consensus 28 ~~~~v~~~~s~tGRi--RqV~~~G~~~~t~Ra~DG~~tL~~~Ga~~L~~~----l~~P~~RVvV~~E~e~f~r~Gk~VFa 101 (155)
T COG1370 28 FPDDVKIVLSKTGRI--RQVFVDGERIATVRANDGLFTLTIEGARRLHRA----LPFPRMRVVVSDEAEEFVRKGKSVFA 101 (155)
T ss_pred ccCCceEEEcCCCce--EEEEECCEEEEEEEcCCceEEechhhhHHHHhc----CCCCceEEEeccccHHHHHhccchhh
Confidence 445555543444444 35678999999999 999999988887644333 456777776655555542 1
Q ss_pred ----CCCCeeeCCCCEEEEEeecCCC--CCEEEEEeCCcccccCCCCEEEEEec
Q 008048 491 ----SFRPLILPEHVTLRVQIPFNSR--SPAWASFDGKDRKQLAPGDALVCSMA 538 (579)
Q Consensus 491 ----s~RPlVlp~~~~I~I~v~~~sr--~~a~vsiDGq~~~~L~~GD~I~I~~S 538 (579)
..-|=+-|.+..+ + |..+.+ ..+.+.++|.+...+..|..|.|+..
T Consensus 102 KfVi~~D~~iR~~dEvl-V-Vne~d~LlAvGra~ls~~E~~~~~~G~AVkVr~G 153 (155)
T COG1370 102 KFVIDVDEEIRAGDEVL-V-VNEDDELLAVGRALLSGAEMREFERGMAVKVREG 153 (155)
T ss_pred hheeccCcccCCCCeEE-E-ECCCCcEEEeeeEeecHHHHhhccccEEEEEecC
Confidence 1112222222222 1 111111 12456778888888999999988764
No 178
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=42.92 E-value=71 Score=36.62 Aligned_cols=134 Identities=20% Similarity=0.280 Sum_probs=72.3
Q ss_pred ccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC-----------Cc----cCcCCCcchHHHHHHHHHcCCceE
Q 008048 333 VDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS-----------LG----FMTPFHSEHYKDYLDSVLRGPISI 392 (579)
Q Consensus 333 ~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~-----------LG----FLt~~~~edi~~~L~~il~G~y~I 392 (579)
+|-|++-||=|. -+.|+++.....+|.|||-+|- +| +-++|+++.-...+ .++.+.-.+
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv-~l~~eq~~~ 422 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVV-DLMPEQKDV 422 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceE-EeccccccC
Confidence 899999999763 5678888888899999998762 33 34455542211111 111111111
Q ss_pred E---EEeeEEEEE--eeccccccccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhh
Q 008048 393 T---LRNRLQCHV--IRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLA 467 (579)
Q Consensus 393 e---~R~rL~v~V--~r~~~~~~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLS 467 (579)
. -.|||-..- ...+.. ....|.= |.+..|-... |+ +|.+++..+..-|++|| +.|
T Consensus 423 ~~lGGTmRLG~y~~~l~~gT~-----a~~lY~~-~~v~ERHRHR----YE--vN~~y~~~le~~Gl~~s--------g~s 482 (533)
T COG0504 423 VDLGGTMRLGAYPCRLKPGTL-----AAKLYGK-DEIYERHRHR----YE--VNNDYRDQLEKAGLVFS--------GTS 482 (533)
T ss_pred CcCCceeeccceeeecCCCcH-----HHHHhCC-Ceeeeeccch----hh--cCHHHHHHHHhCCeEEE--------EEc
Confidence 1 134443221 111111 0111111 5555554432 43 48899999999999998 667
Q ss_pred cCCCCC----CCCCCeEEEEEcCC
Q 008048 468 AGGSMV----HPQVPGILFTPICP 487 (579)
Q Consensus 468 AGGPIV----~P~v~aiviTPIcP 487 (579)
..|-++ .|+-+-|+-+-..|
T Consensus 483 ~d~~lvEivE~~~hpfFv~~QfHP 506 (533)
T COG0504 483 PDGGLVEIVELPDHPFFVATQFHP 506 (533)
T ss_pred CCCCeEEEEEcCCCceEEEEcccc
Confidence 766444 34444444443333
No 179
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=42.81 E-value=82 Score=37.98 Aligned_cols=77 Identities=22% Similarity=0.241 Sum_probs=39.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e-~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGG 341 (579)
.++++||+-+.-.. ..+..++.+.|.. ..++.+.+-..+.. ++..+.+. .-.. -...++|+||.|||
T Consensus 480 ~~~~lvVtd~~~~~-~g~~~~v~~~L~~~~~~i~~~~~~~v~~-----np~~~~v~-----~~~~~~~~~~~D~IIaiGG 548 (862)
T PRK13805 480 KKRAFIVTDRFMVE-LGYVDKVTDVLKKRENGVEYEVFSEVEP-----DPTLSTVR-----KGAELMRSFKPDTIIALGG 548 (862)
T ss_pred CCEEEEEECcchhh-cchHHHHHHHHhcccCCCeEEEeCCCCC-----CcCHHHHH-----HHHHHHHhcCCCEEEEeCC
Confidence 47888888543221 2256677888862 23565543222111 00000000 0000 11357899999998
Q ss_pred chHHHHHHHhc
Q 008048 342 DGTVLWAASIF 352 (579)
Q Consensus 342 DGTlL~AAr~~ 352 (579)
|.++.+++.+
T Consensus 549 -GSviD~AK~i 558 (862)
T PRK13805 549 -GSPMDAAKIM 558 (862)
T ss_pred -chHHHHHHHH
Confidence 6788777665
No 180
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=42.77 E-value=75 Score=30.98 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=46.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHH
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL 346 (579)
|+||-+.++ .+..|+++|.+ .+.++.+-+.... + ..++. ..++|.||.-||=|+.-
T Consensus 2 il~idn~Ds-----ft~nl~~~l~~-~g~~v~v~~~~~~---------------~-~~~~~--~~~~d~iils~GPg~p~ 57 (187)
T PRK08007 2 ILLIDNYDS-----FTWNLYQYFCE-LGADVLVKRNDAL---------------T-LADID--ALKPQKIVISPGPCTPD 57 (187)
T ss_pred EEEEECCCc-----cHHHHHHHHHH-CCCcEEEEeCCCC---------------C-HHHHH--hcCCCEEEEcCCCCChH
Confidence 667766554 36779999986 4676665332100 0 11121 13689999999976543
Q ss_pred ------HHHHhcCCCCCcEEEEcCCC
Q 008048 347 ------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 347 ------~AAr~~~~~~~PILGINlG~ 366 (579)
...+.+ ...+|||||-+|.
T Consensus 58 ~~~~~~~~~~~~-~~~~PiLGIClG~ 82 (187)
T PRK08007 58 EAGISLDVIRHY-AGRLPILGVCLGH 82 (187)
T ss_pred HCCccHHHHHHh-cCCCCEEEECHHH
Confidence 344444 3578999999997
No 181
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=42.26 E-value=71 Score=35.23 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++|+||=.-- -..|+++|.+ .|+++.+-+.... .+++. ..++|.||.-||-|
T Consensus 192 ~~~I~viD~g~-------k~ni~~~L~~-~G~~v~vvp~~~~-----------------~~~i~--~~~~dgIilSgGPg 244 (382)
T CHL00197 192 QLKIIVIDFGV-------KYNILRRLKS-FGCSITVVPATSP-----------------YQDIL--SYQPDGILLSNGPG 244 (382)
T ss_pred CCEEEEEECCc-------HHHHHHHHHH-CCCeEEEEcCCCC-----------------HHHHh--ccCCCEEEEcCCCC
Confidence 36888886622 1348899986 4777766442110 11222 23689999999976
Q ss_pred HH------HHHHHhcCCCCCcEEEEcCCC
Q 008048 344 TV------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 Tl------L~AAr~~~~~~~PILGINlG~ 366 (579)
.. +...+.+....+||+||-+|.
T Consensus 245 ~p~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 245 DPSAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred ChhHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 32 122333334478999999997
No 182
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=42.18 E-value=3.5e+02 Score=26.60 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=59.3
Q ss_pred EEEEEEcCC----ChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 266 TVVILTKPN----SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 266 ~V~IV~Kp~----~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
||+||++.. ...+......+.+.|.+..+++|-+..+... +. . +..+++|+||....
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~--------------~~-~----~~L~~~Dvvv~~~~ 61 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD--------------LT-P----ENLKGYDVVVFYNT 61 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC--------------TS-H----HCHCT-SEEEEE-S
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc--------------CC-h----hHhcCCCEEEEECC
Confidence 689998872 3334445555555665467888876543111 11 1 12468999999988
Q ss_pred chHHH-----HHHHhcCCCCCcEEEEc-CCCCccCcCCCcchHHHHHHHHHcCCceEE-EEeeEEEEE
Q 008048 342 DGTVL-----WAASIFKGPVPPIVPFS-LGSLGFMTPFHSEHYKDYLDSVLRGPISIT-LRNRLQCHV 402 (579)
Q Consensus 342 DGTlL-----~AAr~~~~~~~PILGIN-lG~LGFLt~~~~edi~~~L~~il~G~y~Ie-~R~rL~v~V 402 (579)
.|+.| .+.+.+...+.+++|+. .+...|- +..+ ..+++-|.|.-. ......+.+
T Consensus 62 ~~~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~------~~~~-~~~l~Gg~f~~h~~~~~~~v~~ 122 (217)
T PF06283_consen 62 GGDELTDEQRAALRDYVENGGGLVGLHGAATDSFP------DWPE-YNELLGGYFKGHPPPQPFTVRV 122 (217)
T ss_dssp SCCGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT------T-HH-HHHHHS--SEEEECEEEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHcCCCEEEEcccccccch------hHHH-HHHeeCccccCCCCCceEEEEE
Confidence 87433 33344445788999999 4545552 2333 334677777654 344444443
No 183
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=41.89 E-value=2e+02 Score=25.79 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=57.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+++.... -...-++.++-+++++ .|+++-++..... ++.....++| +|.+|-.=-.
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~-~gi~~~i~a~~~~-------------------e~~~~~~~~D-vill~PQv~~ 59 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE-RGVPLEAAAGAYG-------------------SHYDMIPDYD-LVILAPQMAS 59 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH-CCCcEEEEEeeHH-------------------HHHHhccCCC-EEEEcChHHH
Confidence 577787655 4455678899999986 6887766542211 2233456788 4555555433
Q ss_pred -HHHHH-hcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHH
Q 008048 346 -LWAAS-IFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 346 -L~AAr-~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il 386 (579)
+...+ .....++||.-|+.=.-||++ -+-+..|+.++
T Consensus 60 ~~~~i~~~~~~~~ipv~~I~~~~Yg~~~----~dg~~vl~~~~ 98 (99)
T cd05565 60 YYDELKKDTDRLGIKLVTTTGKQYIELT----RDPDGALKFVL 98 (99)
T ss_pred HHHHHHHHhhhcCCCEEEeCHHHHhHHh----CCHHHHHHHHh
Confidence 34444 444678999999986666543 13445555554
No 184
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.43 E-value=88 Score=31.07 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCccEEEEEeCch--HH---HH-------HHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDG--TV---LW-------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDG--Tl---L~-------AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||-- |. |. ..+.......||+||-+|.
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~ 87 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGM 87 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHH
Confidence 5789999988631 21 11 1222234578999999884
No 185
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.29 E-value=86 Score=28.37 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=50.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
|+|+||.-..++.. ....++++|.+ .|.+||. .+.. .++... ..+. .+.+....+|++++.-.-.
T Consensus 1 ksiAVvGaS~~~~~--~g~~v~~~l~~-~G~~v~~Vnp~~-~~i~G~-------~~y~---sl~e~p~~iDlavv~~~~~ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGK--FGYRVLRNLKA-AGYEVYPVNPKG-GEILGI-------KCYP---SLAEIPEPIDLAVVCVPPD 66 (116)
T ss_dssp -EEEEET--SSTTS--HHHHHHHHHHH-TT-EEEEESTTC-SEETTE-------E-BS---SGGGCSST-SEEEE-S-HH
T ss_pred CEEEEEcccCCCCC--hHHHHHHHHHh-CCCEEEEECCCc-eEECcE-------Eeec---cccCCCCCCCEEEEEcCHH
Confidence 57899987665533 57889999987 5766653 3332 111111 1111 1233357899999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEcCC
Q 008048 344 TVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 344 TlL~AAr~~~~~~~PILGINlG 365 (579)
++..+.+.+...++.-+=|..|
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHHcCCCEEEEEcc
Confidence 9999888887666666666666
No 186
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=41.24 E-value=83 Score=30.92 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=47.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
...+|++|.-...+ -.+......+.+.+ -|+++..-..+.. .++....+....+|.|++-|||
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~-lG~~~~~~~~~~~---------------~~~~~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 28 AGARVLFIPTASGD-RDEYGEEYRAAFER-LGVEVVHLLLIDT---------------ANDPDVVARLLEADGIFVGGGN 90 (210)
T ss_pred CCCeEEEEeCCCCC-hHHHHHHHHHHHHH-cCCceEEEeccCC---------------CCCHHHHHHHhhCCEEEEcCCc
Confidence 45678888765443 23445666667764 3444321110000 0122344566789999999999
Q ss_pred hHHHH----------HHHhcCCCCCcEEEEcCCC
Q 008048 343 GTVLW----------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GTlL~----------AAr~~~~~~~PILGINlG~ 366 (579)
=..+. +.+.....+.|++|++.|.
T Consensus 91 ~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 91 QLRLLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 43332 2121112467899988875
No 187
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=41.02 E-value=1.1e+02 Score=30.58 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=47.5
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE-EEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLN-IYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~-V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+..+|++|.-.... ..+.+.+..+++.+. |+. +.+- .+... + . ..+....+...++|.|++-||
T Consensus 28 ~~~~i~~iptA~~~-~~~~~~~~~~~~~~l-G~~~v~~~-~~~~~---~--------~-a~~~~~~~~l~~ad~I~~~GG 92 (217)
T cd03145 28 AGARIVVIPAASEE-PAEVGEEYRDVFERL-GAREVEVL-VIDSR---E--------A-ANDPEVVARLRDADGIFFTGG 92 (217)
T ss_pred CCCcEEEEeCCCcC-hhHHHHHHHHHHHHc-CCceeEEe-ccCCh---H--------H-cCCHHHHHHHHhCCEEEEeCC
Confidence 35678888665433 244567777777653 442 2211 00000 0 0 012233445678999999999
Q ss_pred chHHHH----------HHHhcCCCCCcEEEEcCCC
Q 008048 342 DGTVLW----------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 342 DGTlL~----------AAr~~~~~~~PILGINlG~ 366 (579)
|=..|. +.+.....++|++|.+.|.
T Consensus 93 ~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA 127 (217)
T cd03145 93 DQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred cHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHH
Confidence 943222 2222223567888888775
No 188
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=40.92 E-value=1.1e+02 Score=33.46 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=50.3
Q ss_pred CCCEEEEEEcCCChhH-HHHHHHHHHHHHhcCC--eEEEEccchhHhhhhcCCcccccccccc--hHHHhhhCCCccEEE
Q 008048 263 PPQTVVILTKPNSNSV-QILCAQMVRWLREQKK--LNIYVEPRVRAELLTESSYFSFVQTWKD--EKEILLLHTKVDLVV 337 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~-~~l~~eii~~L~e~~g--i~V~ve~~va~~l~~~~~~~~~i~~~~~--~~~~~~l~~~~DLVI 337 (579)
+.++++||+.+.-... ..+...+.+.|.+ .+ +.+++..-+.. -...... .+..... +.-.+.-.++.|+||
T Consensus 29 ~~~r~lvVtD~~v~~~~~~~~~~l~~~L~~-~g~~~~v~~~~~~~~-~ge~~k~--~~~~v~~i~~~l~~~~~~r~~~II 104 (369)
T cd08198 29 ARPKVLVVIDSGVAQANPQLASDIQAYAAA-HADALRLVAPPHIVP-GGEACKN--DPDLVEALHAAINRHGIDRHSYVI 104 (369)
T ss_pred CCCeEEEEECcchHHhhhhHHHHHHHHHHh-cCCceeeeeeeEecC-CCccCCC--hHHHHHHHHHHHHHcCCCcCcEEE
Confidence 3578999988755443 2456778888865 35 33332111000 0000000 0000000 000111134456999
Q ss_pred EEeCchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 338 TLGGDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 338 vLGGDGTlL~AAr~~~---~~~~PILGINl 364 (579)
.||| |.++.++..++ ..++|++-|.+
T Consensus 105 alGG-G~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 105 AIGG-GAVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred EECC-hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9999 78888887664 44788888875
No 189
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=40.89 E-value=2.2e+02 Score=23.92 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=54.8
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++|+++.-.+-....-+..++-+++.+ .++.+.++..... +......++|+||+-.--
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v~~~~~~-------------------~~~~~~~~~Dliist~~~-- 58 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKVEQCKIA-------------------EVPSLLDDADLIVSTTKV-- 58 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEEecHH-------------------HhhcccCCCcEEEEcCCc--
Confidence 478888887776666778888888864 4565444321111 111123578998874321
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHH
Q 008048 345 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSV 385 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~i 385 (579)
-.....|++=|+. ||++.+.+++.+.|+.+
T Consensus 59 -------~~~~~~p~i~v~~----~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 59 -------PEDYGIPVINGLP----FLTGIGEDKVYEEILEA 88 (89)
T ss_pred -------CCCCCCCEEEEee----ccccCChHHHHHHHHHh
Confidence 1123568776653 88888888888877765
No 190
>PLN02327 CTP synthase
Probab=40.77 E-value=1e+02 Score=35.84 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=27.6
Q ss_pred hCCCccEEEEEeCc------hHHHHHHHhcCCCCCcEEEEcCC
Q 008048 329 LHTKVDLVVTLGGD------GTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 329 l~~~~DLVIvLGGD------GTlL~AAr~~~~~~~PILGINlG 365 (579)
...++|.||+-||= |- +.++++....++|+|||-+|
T Consensus 359 ~L~~~DGIvvpGGfG~~~~~G~-i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 359 LLKGADGILVPGGFGDRGVEGK-ILAAKYARENKVPYLGICLG 400 (557)
T ss_pred hhccCCEEEeCCCCCCcccccH-HHHHHHHHHcCCCEEEEcHH
Confidence 45789999999983 54 34566666678999999887
No 191
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=40.61 E-value=1.8e+02 Score=30.20 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEE
Q 008048 262 SPPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVT 338 (579)
Q Consensus 262 ~~pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIv 338 (579)
.+.++|+++.. ..++-...+...+.+.+.+.++..+.+ ........ . ...+.. +..++|-+|+
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~--~------------~~~i~~l~~~~vdgiIi 87 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSK--Q------------NDQIDVLLAKGVKALAI 87 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHH--H------------HHHHHHHHHcCCCEEEE
Confidence 34678998875 456666777788888887654566665 22100000 0 011222 2357999999
Q ss_pred EeCchHHHH-HHHhcCCCCCcEEEEcCC
Q 008048 339 LGGDGTVLW-AASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 339 LGGDGTlL~-AAr~~~~~~~PILGINlG 365 (579)
.+.|..... ..+.+...++|++-|+..
T Consensus 88 ~~~~~~~~~~~l~~l~~~giPvV~vd~~ 115 (330)
T PRK15395 88 NLVDPAAAPTVIEKARGQDVPVVFFNKE 115 (330)
T ss_pred eccCHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 998876554 345666678999998763
No 192
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=39.47 E-value=16 Score=34.71 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCccEEEEEeCchHHH-----HHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGDGTVL-----WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGDGTlL-----~AAr~~~~~~~PILGINlG~ 366 (579)
..++|.||.-||.+... +..+.+....+||+||-+|.
T Consensus 39 ~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 39 LKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred ccCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 45799999999977542 22344445689999999996
No 193
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=39.38 E-value=56 Score=32.79 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=30.4
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHc-CCceEEEEeeEEE
Q 008048 339 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLR-GPISITLRNRLQC 400 (579)
Q Consensus 339 LGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~-G~y~Ie~R~rL~v 400 (579)
|||= ||||||-.-... +.|+ .+|++++..++.+.. |....+.|..|..
T Consensus 122 IGGp-smlRaAAKN~~~-V~vv------------~dp~dY~~v~~~l~~~g~~~~~~R~~lA~ 170 (187)
T cd01421 122 IGGP-SLLRAAAKNYKD-VTVL------------VDPADYQKVLEELKSNGSISEETRRRLAL 170 (187)
T ss_pred CCcH-HHHHHHHhcCCC-eEEE------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4555 677766443322 2232 379999999999876 7777666665543
No 194
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=39.09 E-value=34 Score=36.22 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=38.7
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCCC-------------Ccc-C--cCCCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGS-------------LGF-M--TPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG~-------------LGF-L--t~~~~edi~~~L~~il~G 388 (579)
++...+|++|+-||-||++.++.. ++|++.+..+. .|. | .+++++++.++|.++++.
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~ 359 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALFN----GVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD 359 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHHh----CCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC
Confidence 456789999999999999998853 67888875421 121 2 234556666777666653
No 195
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=38.80 E-value=48 Score=34.95 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=41.9
Q ss_pred hhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC-----------C--CccCcC---CCcchHHHHHHHHHcCC
Q 008048 327 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-----------S--LGFMTP---FHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 327 ~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG-----------~--LGFLt~---~~~edi~~~L~~il~G~ 389 (579)
..+...+|++|+-||=||+..+.. .++|++.+..+ . .|.... ++++++.++|.++++..
T Consensus 299 ~~ll~~~d~~I~hgG~~t~~eal~----~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~ 373 (401)
T cd03784 299 DWLLPRCAAVVHHGGAGTTAAALR----AGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP 373 (401)
T ss_pred HHHhhhhheeeecCCchhHHHHHH----cCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH
Confidence 456678999999999999998875 46788888442 1 333222 35677888888887643
No 196
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=38.40 E-value=1.9e+02 Score=28.54 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEc-cchhHhhhh----cCCcccccccccchHHHhhhCCCccEE
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVE-PRVRAELLT----ESSYFSFVQTWKDEKEILLLHTKVDLV 336 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve-~~va~~l~~----~~~~~~~i~~~~~~~~~~~l~~~~DLV 336 (579)
..+..|+.+.+.....-.+.+.++++.|.+ .++.+.+- ......... ......+.. +.+..++..+...+|++
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g-~~~~~~~~~~~~~ad~~ 266 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPR-GDIELVIVGNGLELEEESYELEGDPRVEFLG-AYPQEEIDDFYAEIDVL 266 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHh-cCcEEEEEcCchhhhHHHHhhcCCCeEEEeC-CCCHHHHHHHHHhCCEE
Confidence 345667788876655555566666666654 45666552 111111110 001111111 12234566677889998
Q ss_pred EEEe--CchHHHHHHHhcCCCCCcEEEEcCC---------CCccCcCC-CcchHHHHHHHHHcC
Q 008048 337 VTLG--GDGTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 337 IvLG--GDGTlL~AAr~~~~~~~PILGINlG---------~LGFLt~~-~~edi~~~L~~il~G 388 (579)
|.-. ++|.=+.+...+ ..++||++-+.| .-||+.+. +.+++.++|..+++.
T Consensus 267 i~ps~~~e~~~~~~~Ea~-a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 267 VVPSIWPENFPLVIREAL-AAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred EEcCcccCCCChHHHHHH-HCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 8643 333222233333 256799988764 35776654 477888888888763
No 197
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=38.03 E-value=1.3e+02 Score=30.87 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=44.0
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEE---EEc-cchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNI---YVE-PRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 340 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V---~ve-~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLG 340 (579)
+|||+.=..++...+..+-+.+-|.+. |+.. .++ ....... ... ..-.. -...++|+||++|
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~-g~~~~~~~~~~~~a~~d~----------~~~--~~~~~~l~~~~~DlIi~~g 67 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKEL-GYDEKNVEIEYKNAEGDP----------EKL--RQIARKLKAQKPDLIIAIG 67 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHT-T--CCCEEEEEEE-TT-H----------HHH--HHHHHHHCCTS-SEEEEES
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHc-CCccccEEEEEecCCCCH----------HHH--HHHHHHHhcCCCCEEEEeC
Confidence 689999889999999999999999863 4432 111 1100000 000 00011 1246899999999
Q ss_pred CchHHHHHHHhcCCCCCcE--EEE
Q 008048 341 GDGTVLWAASIFKGPVPPI--VPF 362 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PI--LGI 362 (579)
.+-|.. +++.+.+. +|| .||
T Consensus 68 t~aa~~-~~~~~~~~-iPVVf~~V 89 (294)
T PF04392_consen 68 TPAAQA-LAKHLKDD-IPVVFCGV 89 (294)
T ss_dssp HHHHHH-HHHH-SS--S-EEEECE
T ss_pred cHHHHH-HHHhcCCC-cEEEEEec
Confidence 998765 44455443 887 556
No 198
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=37.93 E-value=1.9e+02 Score=28.02 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred HHHhhhCCCccEEEEEeCc---h-HHHHHHHhcCCCCCcEEEEcCC----------CCccCcC-CCcchHHHHHHHHHcC
Q 008048 324 KEILLLHTKVDLVVTLGGD---G-TVLWAASIFKGPVPPIVPFSLG----------SLGFMTP-FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 324 ~~~~~l~~~~DLVIvLGGD---G-TlL~AAr~~~~~~~PILGINlG----------~LGFLt~-~~~edi~~~L~~il~G 388 (579)
.++..+...+|++|.-... | +++-|+ ..++||+.-+.+ ..||+.+ .+++++.+.|.++++.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~----a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAM----AFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHH----HcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 3455667789998875421 3 333333 346788876542 2677665 4568888888888764
No 199
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=37.87 E-value=30 Score=26.21 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=27.1
Q ss_pred CCCccEEEEEeCchHHHH---------HHHhcCCCCCcEEEEcCCCC
Q 008048 330 HTKVDLVVTLGGDGTVLW---------AASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 330 ~~~~DLVIvLGGDGTlL~---------AAr~~~~~~~PILGINlG~L 367 (579)
..++|.+|+.||.++... ..........|++|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999887733 23333345679999988863
No 200
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=37.67 E-value=14 Score=35.11 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcCcc
Q 008048 84 EAAEWKRRFELERARNLRLENKGNGI 109 (579)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (579)
|--|||.|||.-+--|-+||..+...
T Consensus 2 e~nEWktRYEtQ~E~N~QLekqi~~l 27 (129)
T PF15372_consen 2 EGNEWKTRYETQLELNDQLEKQIIIL 27 (129)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999999887753
No 201
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=37.52 E-value=65 Score=35.13 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=45.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
-++|+++=-- ....++++|.+ .|..+.+-+.... .+++. ..++|.||.-||-|
T Consensus 167 ~~~V~viD~G-------~k~ni~~~L~~-~G~~v~vvp~~~~-----------------~~~i~--~~~~DGIiLsgGPg 219 (354)
T PRK12838 167 GKHVALIDFG-------YKKSILRSLSK-RGCKVTVLPYDTS-----------------LEEIK--NLNPDGIVLSNGPG 219 (354)
T ss_pred CCEEEEECCC-------HHHHHHHHHHH-CCCeEEEEECCCC-----------------HHHHh--hcCCCEEEEcCCCC
Confidence 3577776441 23678888876 4666655332100 11121 13689999999998
Q ss_pred HH------HHHHHhcCCCCCcEEEEcCCC
Q 008048 344 TV------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 Tl------L~AAr~~~~~~~PILGINlG~ 366 (579)
.. +...+.+... +||+||-+|.
T Consensus 220 dp~~~~~~~~~i~~~~~~-~PvlGIClG~ 247 (354)
T PRK12838 220 DPKELQPYLPEIKKLISS-YPILGICLGH 247 (354)
T ss_pred ChHHhHHHHHHHHHHhcC-CCEEEECHHH
Confidence 53 3444444444 8999999997
No 202
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=37.37 E-value=2e+02 Score=29.60 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=41.1
Q ss_pred HhhhCCCccEEEEEe---CchHHHHHHHhcCCCCCcEEEEcC----------CCCccCcCC-CcchHHHHHHHHHcC
Q 008048 326 ILLLHTKVDLVVTLG---GDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 326 ~~~l~~~~DLVIvLG---GDGTlL~AAr~~~~~~~PILGINl----------G~LGFLt~~-~~edi~~~L~~il~G 388 (579)
+..+...+|++|... |.|..+- ..+ ..++||++-+. |.-|+|.+. +++++.++|..+++.
T Consensus 272 ~~~~~~~ad~~v~~S~~Eg~~~~~l--EAm-a~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 272 LDEVYQKAQLSLLTSQSEGFGLSLM--EAL-SHGLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred HHHHHhhhhEEEecccccccChHHH--HHH-hCCCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 445667799999876 4453332 222 35689998764 456788775 678888999888875
No 203
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.31 E-value=65 Score=33.74 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=51.5
Q ss_pred cCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhC--CCccEEE
Q 008048 260 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH--TKVDLVV 337 (579)
Q Consensus 260 W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~--~~~DLVI 337 (579)
.-..|++||||+-++......+...+-+ ..+.+++.+-+.... +++...+.+... ....... ..+|+||
T Consensus 10 lP~~p~~I~vITs~~gAa~~D~~~~~~~---r~~~~~~~~~p~~vQ---G~~A~~~I~~al---~~~~~~~~~~~~Dvii 80 (319)
T PF02601_consen 10 LPKFPKRIAVITSPTGAAIQDFLRTLKR---RNPIVEIILYPASVQ---GEGAAASIVSAL---RKANEMGQADDFDVII 80 (319)
T ss_pred CCCCCCEEEEEeCCchHHHHHHHHHHHH---hCCCcEEEEEecccc---ccchHHHHHHHH---HHHHhccccccccEEE
Confidence 3445999999999988776655555544 235567766543211 010000000000 0111111 3689999
Q ss_pred EEeCchHHH--------HHHHhcCCCCCcEEE
Q 008048 338 TLGGDGTVL--------WAASIFKGPVPPIVP 361 (579)
Q Consensus 338 vLGGDGTlL--------~AAr~~~~~~~PILG 361 (579)
+.=|=|-+- ..++.+....+||+.
T Consensus 81 i~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 81 IIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred EecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 987777542 345666777889865
No 204
>PRK15138 aldehyde reductase; Provisional
Probab=36.02 E-value=86 Score=34.18 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=38.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-...-.......++.+.|. ++++.+-..+.. ++..+.+. .-.+. ...++|+||.||| |
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~---~~~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIaiGG-G 95 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFGGIEP-----NPTYETLM-----KAVKLVREEKITFLLAVGG-G 95 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc---CCeEEEECCccC-----CCCHHHHH-----HHHHHHHHcCCCEEEEeCC-h
Confidence 78999975443333445567777774 444433221110 00000000 00001 1257999999999 5
Q ss_pred HHHHHHHhc
Q 008048 344 TVLWAASIF 352 (579)
Q Consensus 344 TlL~AAr~~ 352 (579)
.++-+++.+
T Consensus 96 S~iD~AK~i 104 (387)
T PRK15138 96 SVLDGTKFI 104 (387)
T ss_pred HHHHHHHHH
Confidence 777766654
No 205
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.85 E-value=66 Score=34.70 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=40.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGD 342 (579)
.++++||+-+.-. ...+..++.+.|.+ .++++.+-..+.. + +....+ ....+ -...++|+||.|||
T Consensus 28 ~~~~livt~~~~~-~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~-p~~~~v-----~~~~~~~~~~~~d~IIaiGG- 94 (377)
T cd08188 28 AKKVLLVSDPGVI-KAGWVDRVIESLEE-AGLEYVVFSDVSP----N-PRDEEV-----MAGAELYLENGCDVIIAVGG- 94 (377)
T ss_pred CCeEEEEeCcchh-hCccHHHHHHHHHH-cCCeEEEeCCCCC----C-CCHHHH-----HHHHHHHHhcCCCEEEEeCC-
Confidence 3699999864321 11246778888875 4565543221111 0 000000 00111 11357999999999
Q ss_pred hHHHHHHHhc
Q 008048 343 GTVLWAASIF 352 (579)
Q Consensus 343 GTlL~AAr~~ 352 (579)
|.++.+++.+
T Consensus 95 GsviD~AK~i 104 (377)
T cd08188 95 GSPIDCAKGI 104 (377)
T ss_pred chHHHHHHHH
Confidence 6888877543
No 206
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=35.74 E-value=1.8e+02 Score=28.27 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=52.0
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
+|||+.. ..++-...+...+.+.++++.++.+.+...... .... ..-+.. +..++|.+|+.+.|.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vdgiii~~~~~ 67 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDAKND-VATQ------------LSQVENFIAQGVDAIIVVPVDT 67 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHH------------HHHHHHHHHcCCCEEEEecCch
Confidence 3666663 467777777788888887625787776432100 0000 001111 235799999999886
Q ss_pred HHH-HHHHhcCCCCCcEEEEcC
Q 008048 344 TVL-WAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 344 TlL-~AAr~~~~~~~PILGINl 364 (579)
... .....+...++|++.++.
T Consensus 68 ~~~~~~~~~l~~~~iPvv~~~~ 89 (272)
T cd06301 68 AATAPIVKAANAAGIPLVYVNR 89 (272)
T ss_pred hhhHHHHHHHHHCCCeEEEecC
Confidence 543 344556677899998875
No 207
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.52 E-value=2.5e+02 Score=27.37 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=59.6
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 267 VVILTK-PNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 267 V~IV~K-p~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
||+|.. .+++-..++...+.+.+.+. .++.+.+-..... .... ...+. -...++|.+|+.+.|.
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~i~~~~~~~~dgiIi~~~~~ 68 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYD-LNKQ------------VSQIDNFIAAKVDLILLNAVDS 68 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCC-HHHH------------HHHHHHHHHhCCCEEEEeCCCh
Confidence 666664 45677777778888888752 3566554221000 0000 00111 1245799999998886
Q ss_pred HH-HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHH---HHHHHHHc
Q 008048 344 TV-LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYK---DYLDSVLR 387 (579)
Q Consensus 344 Tl-L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~---~~L~~il~ 387 (579)
.. -.+.+.+...++||+-++....+...-+..++.. .+.+.+.+
T Consensus 69 ~~~~~~i~~~~~~~ipvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~ 116 (271)
T cd06321 69 KGIAPAVKRAQAAGIVVVAVDVAAEGADATVTTDNVQAGEISCQYLAD 116 (271)
T ss_pred hHhHHHHHHHHHCCCeEEEecCCCCCccceeeechHHHHHHHHHHHHH
Confidence 52 2334555556789999987655544445455433 34444443
No 208
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=35.10 E-value=2.2e+02 Score=27.84 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..++|+++..+.........+.+.+.+++ .|+++.... ... .. ++ ...+..+....|.|+ .++|
T Consensus 130 g~~~i~~l~~~~~~~~~~r~~g~~~~~~~-~g~~~~~~~-~~~----~~---~~------~~~~~~~~~~~dai~-~~~d 193 (281)
T cd06325 130 DAKTVGVLYNPSEANSVVQVKELKKAAAK-LGIEVVEAT-VSS----SN---DV------QQAAQSLAGKVDAIY-VPTD 193 (281)
T ss_pred CCcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCEEEEEe-cCC----HH---HH------HHHHHHhcccCCEEE-EcCc
Confidence 46889998755443333445566666654 566643211 000 00 00 112233444567655 5678
Q ss_pred hHHHHHHHhcC----CCCCcEEEEcC
Q 008048 343 GTVLWAASIFK----GPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~----~~~~PILGINl 364 (579)
.+.+.+.+.+. ...+||+|++-
T Consensus 194 ~~a~~~~~~~~~~~~~~~ipvig~d~ 219 (281)
T cd06325 194 NTVASAMEAVVKVANEAKIPVIASDD 219 (281)
T ss_pred hhHHhHHHHHHHHHHHcCCCEEEcCH
Confidence 77554444332 24789999964
No 209
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=35.04 E-value=2.2e+02 Score=27.18 Aligned_cols=87 Identities=14% Similarity=0.016 Sum_probs=51.6
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
+|++|.. ..++-..++...+.+.+.+ .|+.+.+...-...- . . ..-+.. ...++|.||..+.+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~-~g~~~~~~~~~~~~~-~----------~--~~~~~~l~~~~vdgvi~~~~~~ 66 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE-LGVELIVLDAQNDVS-K----------Q--IQQIEDLIAQGVDGIIISPVDS 66 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh-cCceEEEECCCCCHH-H----------H--HHHHHHHHHcCCCEEEEeCCCc
Confidence 4677764 3466667777888888875 577766532210000 0 0 001111 234799999998876
Q ss_pred HHHH-HHHhcCCCCCcEEEEcCCC
Q 008048 344 TVLW-AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 TlL~-AAr~~~~~~~PILGINlG~ 366 (579)
..+. ..+.+....+|++.++...
T Consensus 67 ~~~~~~~~~l~~~~ip~V~~~~~~ 90 (267)
T cd01536 67 AALTPALKKANAAGIPVVTVDSDI 90 (267)
T ss_pred hhHHHHHHHHHHCCCcEEEecCCC
Confidence 6543 4455556678999998753
No 210
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=34.87 E-value=82 Score=36.21 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=25.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhh
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL 308 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~ 308 (579)
++++|+|-..- ++++.++++++. + .|++++-...+++.+.
T Consensus 3 ~~~~aLISVsD-K~~iv~lAk~L~----~-lGfeI~AT~GTak~L~ 42 (513)
T PRK00881 3 MIKRALISVSD-KTGIVEFAKALV----E-LGVEILSTGGTAKLLA 42 (513)
T ss_pred CcCEEEEEEeC-cccHHHHHHHHH----H-CCCEEEEcchHHHHHH
Confidence 46788777764 777766555554 3 4677766666665543
No 211
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=34.07 E-value=2.2e+02 Score=27.64 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHhhhCCCccEEEEEeCc---h-HHHHHHHhcCCCCCcEEEEcC---------CCCccCcCC-CcchHHHHHHHHHcC
Q 008048 325 EILLLHTKVDLVVTLGGD---G-TVLWAASIFKGPVPPIVPFSL---------GSLGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGGD---G-TlL~AAr~~~~~~~PILGINl---------G~LGFLt~~-~~edi~~~L~~il~G 388 (579)
++..+...+|++|.-... | +++-|. ..++||+.-+. |.-|++.+. +++++.+.|..++..
T Consensus 256 ~~~~~~~~adi~i~ps~~e~~~~~~~Ea~----~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 256 DVPELLAAADVFVLPSYREGLPRVLLEAM----AMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred cHHHHHHhccEEEecCcccCcchHHHHHH----HcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 345566778988765432 2 333322 34678888776 345777664 477788888887654
No 212
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=33.29 E-value=2.8e+02 Score=30.29 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=86.1
Q ss_pred CCccccceEEEecC--Cceeeec---cCcceEeee--cCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccc
Q 008048 230 NSDQHKHDIVYFER--GNITTAE---RSSKQISLK--WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPR 302 (579)
Q Consensus 230 ~~~~h~~~v~~~~~--~~i~~~~---~s~k~~~l~--W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~ 302 (579)
.+..-.+.+-+++. ||++-.+ +-.+|+.|- ...--|+||++++|+.+....+.+++.++++. .|++|+--.-
T Consensus 118 td~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v 196 (322)
T COG2984 118 TDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAV 196 (322)
T ss_pred CchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEec
Confidence 33444555555555 4555433 233444321 23336899999999998889999999999986 6898863211
Q ss_pred hhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhc----CCCCCcEEEEcCC--CCccCcCCCcc
Q 008048 303 VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIF----KGPVPPIVPFSLG--SLGFMTPFHSE 376 (579)
Q Consensus 303 va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~----~~~~~PILGINlG--~LGFLt~~~~e 376 (579)
... + +.......+..+.|.+++. =|-|+-.+.+.+ ....+|+++=..+ .-|-++.+..+
T Consensus 197 ~~~---------n-----di~~a~~~l~g~~d~i~~p-~dn~i~s~~~~l~~~a~~~kiPli~sd~~~V~~Ga~aA~gvd 261 (322)
T COG2984 197 TSV---------N-----DIPRAVQALLGKVDVIYIP-TDNLIVSAIESLLQVANKAKIPLIASDTSSVKEGALAALGVD 261 (322)
T ss_pred Ccc---------c-----ccHHHHHHhcCCCcEEEEe-cchHHHHHHHHHHHHHHHhCCCeecCCHHHHhcCcceeeccC
Confidence 000 0 0012344556788877654 455665544332 2457899987765 33556665544
Q ss_pred hHH------HHHHHHHcCC
Q 008048 377 HYK------DYLDSVLRGP 389 (579)
Q Consensus 377 di~------~~L~~il~G~ 389 (579)
..+ ..+.+||+|+
T Consensus 262 y~~~G~qtg~~v~~ILkG~ 280 (322)
T COG2984 262 YKDLGKQTGEMVVKILKGK 280 (322)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 433 3588889884
No 213
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=32.63 E-value=64 Score=34.17 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=37.9
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
.+++++++....-+ .+...+++++|+++ +.+...+...+ +. .+........++...+|++|++||
T Consensus 153 ~~~kv~vvsQTT~~--~~~~~~i~~~l~~~~~~~~~~~~nTI----------C~--aT~~RQ~a~~~La~~vD~miVIGg 218 (281)
T PF02401_consen 153 DPKKVAVVSQTTQS--VEKFEEIVEALKKRFPELEGPVFNTI----------CY--ATQNRQEAARELAKEVDAMIVIGG 218 (281)
T ss_dssp STTCEEEEE-TTS---HHHHHHHHHHHHHHSTCEE-SCC-S------------C--HHHHHHHHHHHHHCCSSEEEEES-
T ss_pred CCCeEEEEEeeccc--HHHHHHHHHHHHHhCccccCCCCCCC----------CH--hHHHHHHHHHHHHhhCCEEEEecC
Confidence 35799999987654 45578888898853 22221011111 00 011112356678889999999999
Q ss_pred chH
Q 008048 342 DGT 344 (579)
Q Consensus 342 DGT 344 (579)
--.
T Consensus 219 ~~S 221 (281)
T PF02401_consen 219 KNS 221 (281)
T ss_dssp TT-
T ss_pred CCC
Confidence 854
No 214
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=32.38 E-value=1.6e+02 Score=32.41 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=32.8
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-CCCCcEEEEcC--CCCccCcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-GPVPPIVPFSL--GSLGFMTP 372 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-~~~~PILGINl--G~LGFLt~ 372 (579)
.++|+||-+|| |+.+.+++.++ ..+.|++.|.. -+=|+-++
T Consensus 83 ~~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 83 DGADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIASTDAITSP 126 (360)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCccccccccCC
Confidence 56899999999 79999999887 46889999876 35555555
No 215
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=32.38 E-value=29 Score=32.30 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=24.0
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEc
Q 008048 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFS 363 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGIN 363 (579)
+.++...+|+||+-||=||+.-++.. ++|.+-|.
T Consensus 66 m~~~m~~aDlvIs~aG~~Ti~E~l~~----g~P~I~ip 99 (167)
T PF04101_consen 66 MAELMAAADLVISHAGAGTIAEALAL----GKPAIVIP 99 (167)
T ss_dssp HHHHHHHHSEEEECS-CHHHHHHHHC----T--EEEE-
T ss_pred HHHHHHHcCEEEeCCCccHHHHHHHc----CCCeeccC
Confidence 45566789999999999999998864 46776663
No 216
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=32.11 E-value=2.5e+02 Score=27.42 Aligned_cols=87 Identities=8% Similarity=-0.083 Sum_probs=50.2
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccc-hhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPR-VRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~-va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
+||++.+ ..++-...+...+.+.+++ .|+.+.+... ........ ..-++. +..++|.+|+.+.+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~------------~~~i~~l~~~~vdgiIi~~~~ 67 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LGVSVDIQAAPSEGDQQGQ------------LSIAENMINKGYKGLLFSPIS 67 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hCCeEEEEccCCCCCHHHH------------HHHHHHHHHhCCCEEEECCCC
Confidence 4677776 4666667777778888875 5777665321 00000000 001111 23468999988877
Q ss_pred hHHH-HHHHhcCCCCCcEEEEcCC
Q 008048 343 GTVL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 343 GTlL-~AAr~~~~~~~PILGINlG 365 (579)
.+-+ .....+...++|++.++..
T Consensus 68 ~~~~~~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 68 DVNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred hHHhHHHHHHHHHCCCeEEEECCC
Confidence 6533 3445555678999999763
No 217
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.65 E-value=1.5e+02 Score=24.69 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=38.9
Q ss_pred CCEEEEEEcCC-ChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPN-SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~-~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
|..|.|+.-.+ +++....+.+++..|+. .|+.|.++... ..+... +. .....++.++|++|.+
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~-~~l~k~------i~--------~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRN-ERPGVK------FA--------DADLIGIPYRIVVGKK 64 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCC-CCcccc------hh--------HHHhcCCCEEEEECCc
Confidence 45677776443 34677789999999985 58888876431 111110 00 0113578999999954
No 218
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=31.06 E-value=2.4e+02 Score=27.42 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=50.5
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
+|+++.. .+++-...+...+.+.+++ .|+.+.+-..-.. .... ...+. -+..++|.+|+..+|.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~l~~~~~~~vdgii~~~~~~ 66 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEA-LGGDLRVYDAGGD-DAKQ------------ADQIDQAIAQKVDAIIIQHGRA 66 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHH-cCCEEEEECCCCC-HHHH------------HHHHHHHHHcCCCEEEEecCCh
Confidence 3666654 5666666777888888876 5777665321000 0000 00011 1235799999998875
Q ss_pred HH-HHHHHhcCCCCCcEEEEcCC
Q 008048 344 TV-LWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 344 Tl-L~AAr~~~~~~~PILGINlG 365 (579)
+. ....+.+...++|++.++..
T Consensus 67 ~~~~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 67 EVLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred hhhHHHHHHHHHcCCCEEEecCC
Confidence 43 34445555678999999864
No 219
>PF08788 NHR2: NHR2 domain like; InterPro: IPR014896 Transcriptional activation and repression are required for control of cell proliferation and differentiation during embryonic development and homeostasis in the adult organism. Perturbations of these processes can lead to the development of cancer []. The Eight-Twenty-One (ETO) gene product is able to form complexes with corepressors and deacetylases, such as nuclear receptor corepressor (N-CoR), which repress transcription when recruited by transcription factors []. The ETO gene derives its name from its association with many cases of acute myelogenous leukaemia (AML), in which a reciprocal translocation, t(8;21), brings together a large portion of the ETO gene from chromosome eight and part of the AML1 gene from chromosome 21. The human ETO gene family currently comprises three major subfamilies: ETO/myeloid transforming gene on chromosome 8 (MTG8); myeloid transforming gene related protein-1 (MTGR1) and myeloid transforming gene on chromosome 16 (MTG16). ETO proteins are composed of four evolutionarily conserved domains termed nervy homology regions (NHR) 1-4. NHR1 is thought to stabilise the formation of high molecular weight complexes, but is not directly responsible for repressor activity. NHR2 and its flanking sequence comprise the core repressor domain, which mediates 50% of the wild type repressor activity. Furthermore, there is evidence that the amphipathic helical structure of NHR2 promotes the formation of ETO/AML1 homodimers []. NHR3 and NHR4 have been shown to act in concert to bind N-CoR. NHR4 contains two zinc finger motifs, which are thought to play a role in protein interactions rather than DNA binding []. This entry represents the NHR2 (Nervy homology 2) domain found in ETO proteins. It mediates oligomerisation and protein-protein interactions, forming an alpha-helical tetramer []. ; PDB: 1WQ6_A.
Probab=30.82 E-value=97 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhHhHH---HHHHHHHHHHH
Q 008048 63 ALRTVAKALRRAAEGKAAAQ---AEAAEWKRRFE 93 (579)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 93 (579)
-|--|.|+.|.++--.--.| .|-..|+|||-
T Consensus 28 I~~MVeKTrRsl~vLrR~qeaDREeln~W~Rr~~ 61 (67)
T PF08788_consen 28 IMDMVEKTRRSLAVLRRCQEADREELNYWIRRCS 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 35678888888877654445 68889999984
No 220
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.57 E-value=35 Score=34.39 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=41.9
Q ss_pred EEEEEeCchHHHH----HHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHc
Q 008048 335 LVVTLGGDGTVLW----AASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLR 387 (579)
Q Consensus 335 LVIvLGGDGTlL~----AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~ 387 (579)
++|.+-|||-.-. ++..++..++||+|||.=+. |...-+|++....|.+++.
T Consensus 4 ~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Y-fw~~rtP~~~a~Dl~~~i~ 59 (192)
T PF06057_consen 4 LAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRY-FWSERTPEQTAADLARIIR 59 (192)
T ss_pred EEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHH-HhhhCCHHHHHHHHHHHHH
Confidence 6888999997653 45666778999999998654 7788899998888888875
No 221
>PRK00758 GMP synthase subunit A; Validated
Probab=30.56 E-value=1.2e+02 Score=29.08 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=21.9
Q ss_pred cEEEEEeCchHHHH---HHHhcCCCCCcEEEEcCCC
Q 008048 334 DLVVTLGGDGTVLW---AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 334 DLVIvLGGDGTlL~---AAr~~~~~~~PILGINlG~ 366 (579)
|.||.-||.. +-. ..+.+....+||+||-+|.
T Consensus 43 dgivi~Gg~~-~~~~~~~~~~l~~~~~PilGIC~G~ 77 (184)
T PRK00758 43 DGLILSGGPD-IERAGNCPEYLKELDVPILGICLGH 77 (184)
T ss_pred CEEEECCCCC-hhhccccHHHHHhCCCCEEEEeHHH
Confidence 8899999883 311 1223324579999999996
No 222
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=30.50 E-value=2.5e+02 Score=26.98 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=49.1
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 008048 267 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDGT 344 (579)
|||+.. ..++-...+.+.+.+.+++ .|+.+.+...-.... .. ..-+.. +..++|.||+..++..
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdgiii~~~~~~ 67 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARA-AGYSLLLATTDYDAE-RE------------ADAVETLLRQRVDGLILTVADAA 67 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHH-CCCEEEEeeCCCCHH-HH------------HHHHHHHHhcCCCEEEEecCCCC
Confidence 676663 4566666777778887765 578776643210000 00 001111 2357999998877754
Q ss_pred HHHHHHhcCCCCCcEEEEcCC
Q 008048 345 VLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG 365 (579)
.....+.+...++|++.++..
T Consensus 68 ~~~~~~~~~~~~ipvV~~~~~ 88 (266)
T cd06282 68 TSPALDLLDAERVPYVLAYND 88 (266)
T ss_pred chHHHHHHhhCCCCEEEEecc
Confidence 333445555678999888653
No 223
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=30.41 E-value=1.8e+02 Score=26.35 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=69.4
Q ss_pred ecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHh--cCCeEEEEcc--chhHhhh---hc---CCcccccccccchHHHhh
Q 008048 259 KWESPPQTVVILTKPNSNSVQILCAQMVRWLRE--QKKLNIYVEP--RVRAELL---TE---SSYFSFVQTWKDEKEILL 328 (579)
Q Consensus 259 ~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e--~~gi~V~ve~--~va~~l~---~~---~~~~~~i~~~~~~~~~~~ 328 (579)
.....+..|+.+.+.....-...+-+++..+.+ ...+.+.+-- .....+. .. .....++.... ..++..
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~ 88 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVP-DDELDE 88 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHS-HHHHHH
T ss_pred CCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccc-cccccc
Confidence 344557788888887765555666666666653 3566555432 1111111 10 01111222211 335667
Q ss_pred hCCCccEEEEE----eCchHHHHHHHhcCCCCCcEEEEcC---------CCCccCcC-CCcchHHHHHHHHHcC
Q 008048 329 LHTKVDLVVTL----GGDGTVLWAASIFKGPVPPIVPFSL---------GSLGFMTP-FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 329 l~~~~DLVIvL----GGDGTlL~AAr~~~~~~~PILGINl---------G~LGFLt~-~~~edi~~~L~~il~G 388 (579)
+...+|++|.. |+=.+++.|.. .++|++.-+. |.-|++.+ .+++++.+.|.++++.
T Consensus 89 ~~~~~di~v~~s~~e~~~~~~~Ea~~----~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 89 LYKSSDIFVSPSRNEGFGLSLLEAMA----CGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHTSEEEE-BSSBSS-HHHHHHHH----TT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccceeccccccccccccccccccc----cccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 77789999988 45556666543 4578888876 34567665 4567888888887753
No 224
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=30.38 E-value=1.3e+02 Score=31.47 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=48.0
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC---
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG--- 341 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG--- 341 (579)
.+|+|+.-+....-. ++++.|++ .|+++.+-.. . ++. + ......++|.||+.||
T Consensus 4 ~kvaVl~~pG~n~d~----e~~~Al~~-aG~~v~~v~~-~-~~~--------------~--~~~~l~~~DgLvipGGfs~ 60 (261)
T PRK01175 4 IRVAVLRMEGTNCED----ETVKAFRR-LGVEPEYVHI-N-DLA--------------A--ERKSVSDYDCLVIPGGFSA 60 (261)
T ss_pred CEEEEEeCCCCCCHH----HHHHHHHH-CCCcEEEEee-c-ccc--------------c--cccchhhCCEEEECCCCCc
Confidence 479999887664333 44566654 4555433110 0 000 0 0011356999999999
Q ss_pred -c----h-----H----HHHHHHhcCCCCCcEEEEcCC-----CCccCc
Q 008048 342 -D----G-----T----VLWAASIFKGPVPPIVPFSLG-----SLGFMT 371 (579)
Q Consensus 342 -D----G-----T----lL~AAr~~~~~~~PILGINlG-----~LGFLt 371 (579)
| | . +..+.+.+...+.||+||-.| ..|.|-
T Consensus 61 gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLp 109 (261)
T PRK01175 61 GDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLP 109 (261)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCC
Confidence 3 1 1 114456666678999999876 366663
No 225
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=30.31 E-value=45 Score=32.89 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHhhhCCCccEEEEEeCchHHHHHHHh
Q 008048 325 EILLLHTKVDLVVTLGGDGTVLWAASI 351 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGGDGTlL~AAr~ 351 (579)
.+.+...++|+||+-+|-||.|.+.+.
T Consensus 73 sl~e~I~~AdlVIsHAGaGS~letL~l 99 (170)
T KOG3349|consen 73 SLTEDIRSADLVISHAGAGSCLETLRL 99 (170)
T ss_pred cHHHHHhhccEEEecCCcchHHHHHHc
Confidence 344556679999999999999999976
No 226
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.22 E-value=2.3e+02 Score=25.46 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=43.7
Q ss_pred eEeeecCC--CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCC
Q 008048 255 QISLKWES--PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTK 332 (579)
Q Consensus 255 ~~~l~W~~--~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~ 332 (579)
.|.+.|-. .|..|.|+.-..++.....+.+++..|+. .|+.|.++.. ..+... +. ..-..+
T Consensus 15 ~~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~-~gi~v~~d~~--~sl~kq------lk--------~A~k~g 77 (121)
T cd00858 15 RIVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRE-LGFSVKYDDS--GSIGRR------YA--------RQDEIG 77 (121)
T ss_pred cEEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHH-CCCEEEEeCC--CCHHHH------HH--------HhHhcC
Confidence 34455522 25666777644346667788999999975 5888887653 222111 00 011356
Q ss_pred ccEEEEEeCch
Q 008048 333 VDLVVTLGGDG 343 (579)
Q Consensus 333 ~DLVIvLGGDG 343 (579)
+.++|++|.+-
T Consensus 78 ~~~~iiiG~~e 88 (121)
T cd00858 78 TPFCVTVDFDT 88 (121)
T ss_pred CCEEEEECcCc
Confidence 89999999774
No 227
>PTZ00287 6-phosphofructokinase; Provisional
Probab=30.17 E-value=43 Score=42.51 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=26.2
Q ss_pred CCccEEEEEeCchHHHHHHHhc---CCCCCc--EEEEcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIF---KGPVPP--IVPFSL 364 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~---~~~~~P--ILGINl 364 (579)
-++|.+|++|||||+-.|+.+. ...++| |+||.-
T Consensus 270 l~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPK 308 (1419)
T PTZ00287 270 LKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPK 308 (1419)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEee
Confidence 4799999999999998887654 234567 699853
No 228
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=29.69 E-value=92 Score=30.26 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=22.7
Q ss_pred CCccEEEEEeCchH-----------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGT-----------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGT-----------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||..+ +....+.+...+.||+||-.|.
T Consensus 35 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~ 81 (198)
T cd01748 35 LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGM 81 (198)
T ss_pred ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 35898888664211 2334444445678999998874
No 229
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=29.26 E-value=2.9e+02 Score=26.79 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=48.7
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 008048 267 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDGT 344 (579)
|||+.. ..++-...+...+.+.+++ .|+.+.+...-... ... ..-+. -...++|.||++|.+..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiii~~~~~~ 67 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAA-HGYTLLVASSGYDL-DRE------------YAQARKLLERGVDGLALIGLDHS 67 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHH-CCCEEEEecCCCCH-HHH------------HHHHHHHHhcCCCEEEEeCCCCC
Confidence 666663 5667777888888888876 47776652210000 000 00111 12346899999987643
Q ss_pred HHHHHHhcCCCCCcEEEEcC
Q 008048 345 VLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINl 364 (579)
-.+.+.+...++|++.++.
T Consensus 68 -~~~~~~l~~~~iPvv~~~~ 86 (268)
T cd06273 68 -PALLDLLARRGVPYVATWN 86 (268)
T ss_pred -HHHHHHHHhCCCCEEEEcC
Confidence 2334455567899999875
No 230
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.23 E-value=4.3e+02 Score=25.10 Aligned_cols=45 Identities=4% Similarity=0.148 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhh
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT 309 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~ 309 (579)
.++.+|+|..+- +++++.++++++.+.|. |..++.-+.+++.+..
T Consensus 2 ~~~~~v~lsv~d~dK~~l~~~a~~l~~ll~---Gf~l~AT~gTa~~L~~ 47 (142)
T PRK05234 2 PARKRIALIAHDHKKDDLVAWVKAHKDLLE---QHELYATGTTGGLIQE 47 (142)
T ss_pred CcCcEEEEEEeccchHHHHHHHHHHHHHhc---CCEEEEeChHHHHHHh
Confidence 356778887764 56777777777776663 6888887887776543
No 231
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.88 E-value=1e+02 Score=34.24 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=50.3
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhhh--CCCccEEE
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDLVV 337 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l--~~~~DLVI 337 (579)
-..|++||||+-++...... +++-+.++ +.+++++-+.... ++....+.+ ..+..+ ..++|+||
T Consensus 126 P~~p~~i~vits~~~aa~~D----~~~~~~~r~p~~~~~~~~~~vQ---G~~a~~~i~------~al~~~~~~~~~dvii 192 (432)
T TIGR00237 126 PHFPKRVGVITSQTGAALAD----ILHILKRRDPSLKVVIYPTLVQ---GEGAVQSIV------ESIELANTKNECDVLI 192 (432)
T ss_pred CCCCCEEEEEeCCccHHHHH----HHHHHHhhCCCceEEEeccccc---CccHHHHHH------HHHHHhhcCCCCCEEE
Confidence 34599999999998876644 44555432 4567776543211 111000000 011111 23489999
Q ss_pred EEeCchHHH--------HHHHhcCCCCCcEEE
Q 008048 338 TLGGDGTVL--------WAASIFKGPVPPIVP 361 (579)
Q Consensus 338 vLGGDGTlL--------~AAr~~~~~~~PILG 361 (579)
+.=|=|.+- ..++.+....+||+.
T Consensus 193 i~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 193 VGRGGGSLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred EecCCCCHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 998878763 345666777889865
No 232
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.81 E-value=46 Score=31.65 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=27.8
Q ss_pred CccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEcCCCC
Q 008048 332 KVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 332 ~~DLVIvLGGDGT--------lL~AAr~~~~~~~PILGINlG~L 367 (579)
++|.+|+.||.|+ ++...+.+.....||.+|..|..
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~ 119 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ 119 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHH
Confidence 5799999999664 44555666677889999999863
No 233
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=28.71 E-value=4e+02 Score=26.73 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=40.0
Q ss_pred hHHHhhhCCCccEEEEEe---Cch-HHHHHHHhcCCCCCcEEEEcCC---------CCccCcCC-CcchHHHHHHHHHcC
Q 008048 323 EKEILLLHTKVDLVVTLG---GDG-TVLWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 323 ~~~~~~l~~~~DLVIvLG---GDG-TlL~AAr~~~~~~~PILGINlG---------~LGFLt~~-~~edi~~~L~~il~G 388 (579)
...+..+...+|++|.-- |-| +++-|. ..++||++.+.| ..||+.+. +++++.++|.++++.
T Consensus 255 ~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam----~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 255 DESLALIYSAADVFVVPSLQENFPNTAIEAL----ACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD 330 (365)
T ss_pred HHHHHHHHHhCCEEEeccccccccHHHHHHH----hcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 344556677889998743 223 333333 356799988764 35666553 578888888888763
No 234
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=28.45 E-value=3.2e+02 Score=27.08 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=41.2
Q ss_pred hHHHhhhCCCccEEEEE------eCchHHHHHHHhcCCCCCcEEEEcCC--------CCccCcCC-CcchHHHHHHHHHc
Q 008048 323 EKEILLLHTKVDLVVTL------GGDGTVLWAASIFKGPVPPIVPFSLG--------SLGFMTPF-HSEHYKDYLDSVLR 387 (579)
Q Consensus 323 ~~~~~~l~~~~DLVIvL------GGDGTlL~AAr~~~~~~~PILGINlG--------~LGFLt~~-~~edi~~~L~~il~ 387 (579)
..++..+...+|++|.- |.-++++.|. ..++||+.-+.| .-|++.+. +++++.++|..+++
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~----a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSGVLAYAI----GFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccchHHHHHH----HcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHc
Confidence 44566777889998854 3334666543 346789887764 34666553 47788888888876
Q ss_pred C
Q 008048 388 G 388 (579)
Q Consensus 388 G 388 (579)
.
T Consensus 334 ~ 334 (366)
T cd03822 334 D 334 (366)
T ss_pred C
Confidence 4
No 235
>PRK11249 katE hydroperoxidase II; Provisional
Probab=28.35 E-value=1.8e+02 Score=35.12 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=53.4
Q ss_pred ecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhh-CCCccEE
Q 008048 259 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLV 336 (579)
Q Consensus 259 ~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLV 336 (579)
.|..+-++|+|+.-.+-... .+..+.+.|.+ .|+.+.+ .+.. ..+.... .. .+. .+..+... ...+|.|
T Consensus 592 ~~~~~gRKIaILVaDG~d~~--ev~~~~daL~~-AGa~V~VVSp~~-G~V~~s~-G~-~I~---aD~t~~~~~Sv~FDAV 662 (752)
T PRK11249 592 DGDIKGRKVAILLNDGVDAA--DLLAILKALKA-KGVHAKLLYPRM-GEVTADD-GT-VLP---IAATFAGAPSLTFDAV 662 (752)
T ss_pred CCCccccEEEEEecCCCCHH--HHHHHHHHHHH-CCCEEEEEECCC-CeEECCC-CC-EEe---cceeeccCCccCCCEE
Confidence 56666789999997654322 24567777775 4565544 2221 1111100 00 010 01111111 2358999
Q ss_pred EEEeCc---------hHHHHHHHhcCCCCCcEEEEcCC
Q 008048 337 VTLGGD---------GTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 337 IvLGGD---------GTlL~AAr~~~~~~~PILGINlG 365 (579)
++.||. +-++...+.+..+..||..|..|
T Consensus 663 vVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG 700 (752)
T PRK11249 663 IVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA 700 (752)
T ss_pred EECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 999994 34455555566778899888765
No 236
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.25 E-value=3.5e+02 Score=26.32 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=50.1
Q ss_pred EEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccch-hHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 008048 266 TVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRV-RAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 342 (579)
Q Consensus 266 ~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~v-a~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGD 342 (579)
+|||+..- .++-...+...+.+.+.+ .|+.+.+.... ....... ..-+. -...++|-||+.+.|
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~------------~~~i~~l~~~~vdgvii~~~~ 67 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE-LGVKVTFQGPASETDVAGQ------------VNLLENAIARGPDAILLAPTD 67 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH-cCCEEEEecCccCCCHHHH------------HHHHHHHHHhCCCEEEEcCCC
Confidence 47777643 566677777888888876 57777664210 0000000 00011 123579999999887
Q ss_pred hHHHH-HHHhcCCCCCcEEEEcCC
Q 008048 343 GTVLW-AASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 343 GTlL~-AAr~~~~~~~PILGINlG 365 (579)
...+. ....+...++|++.++..
T Consensus 68 ~~~~~~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 68 AKALVPPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred hhhhHHHHHHHHHCCCCEEEecCC
Confidence 65332 334444567899999753
No 237
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=28.15 E-value=43 Score=33.94 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=27.2
Q ss_pred CCccEEEEEeCchH---------------HHHHHHhcCCCCCcEEEEcCC
Q 008048 331 TKVDLVVTLGGDGT---------------VLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 331 ~~~DLVIvLGGDGT---------------lL~AAr~~~~~~~PILGINlG 365 (579)
.++|.||.-||-.. ++...+.+...+.||+||-.|
T Consensus 42 ~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G 91 (238)
T cd01740 42 DDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNG 91 (238)
T ss_pred hhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcH
Confidence 46899999999431 556677777788999999875
No 238
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.80 E-value=2.6e+02 Score=27.76 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=45.1
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcC-CeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQK-KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~-gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
++..+|++|.-... ...+....+.+.+.+ - |+++..-.... +....+....+|.|++=|
T Consensus 29 ~~~~~i~~IptAs~-~~~~~~~~~~~a~~~-l~G~~~~~~~~~~------------------~~~~~~~l~~ad~I~l~G 88 (212)
T cd03146 29 KARPKVLFVPTASG-DRDEYTARFYAAFES-LRGVEVSHLHLFD------------------TEDPLDALLEADVIYVGG 88 (212)
T ss_pred cCCCeEEEECCCCC-CHHHHHHHHHHHHhh-ccCcEEEEEeccC------------------cccHHHHHhcCCEEEECC
Confidence 34578888877654 233556666666754 4 55543211000 011123345789888888
Q ss_pred CchHHHHHHHhc------------CCCCCcEEEEcCCC
Q 008048 341 GDGTVLWAASIF------------KGPVPPIVPFSLGS 366 (579)
Q Consensus 341 GDGTlL~AAr~~------------~~~~~PILGINlG~ 366 (579)
|| ..+..+.+ ...+.|++|+..|.
T Consensus 89 G~--~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 89 GN--TFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred ch--HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 64 33333222 22467888888875
No 239
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.57 E-value=1.1e+02 Score=32.36 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
+++++++....-+ .+.+.+++++|+++ .-++.+-..+ ++ .+.+-.....++...+|++|++||-
T Consensus 156 ~~kv~~vsQTT~~--~~~~~~iv~~l~~~-~~~~~v~~TI----------C~--aT~~RQ~a~~~La~~vD~miVVGg~ 219 (281)
T PRK12360 156 LDKACVVAQTTII--PELWEDILNVIKLK-SKELVFFNTI----------CS--ATKKRQESAKELSKEVDVMIVIGGK 219 (281)
T ss_pred ccCEEEEECCCCc--HHHHHHHHHHHHHh-CcccccCCCc----------ch--hhhhHHHHHHHHHHhCCEEEEecCC
Confidence 4889999887544 34577888888752 2222111111 11 0111123456778899999999997
No 240
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=27.40 E-value=2.1e+02 Score=29.59 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE-EEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLN-IYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~-V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..+|++|.-... ...+.+....+.|+. .|++ +-+- .+.. .. . ..+.+..+....+|.|++-|||
T Consensus 28 ~~rI~~iptAS~-~~~~~~~~~~~~~~~-lG~~~v~~l-~i~~----r~-------~-a~~~~~~~~l~~ad~I~~~GGn 92 (250)
T TIGR02069 28 DAIIVIITSASE-EPREVGERYITIFSR-LGVKEVKIL-DVRE----RE-------D-ASDENAIALLSNATGIFFTGGD 92 (250)
T ss_pred CceEEEEeCCCC-ChHHHHHHHHHHHHH-cCCceeEEE-ecCC----hH-------H-ccCHHHHHHHhhCCEEEEeCCC
Confidence 347888876543 233456666666664 3542 2110 0000 00 0 0012233456789999999999
Q ss_pred hHHH----------HHHHhcCCCCCcEEEEcCCC
Q 008048 343 GTVL----------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GTlL----------~AAr~~~~~~~PILGINlG~ 366 (579)
=..| .+.+.....++|+.|.+.|.
T Consensus 93 q~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 93 QLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHH
Confidence 2222 22332233468899998886
No 241
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=27.34 E-value=2.7e+02 Score=27.18 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=26.0
Q ss_pred CCCccEEEEEeCchHHHH-HHHhcCCCCCcEEEEcCC
Q 008048 330 HTKVDLVVTLGGDGTVLW-AASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 330 ~~~~DLVIvLGGDGTlL~-AAr~~~~~~~PILGINlG 365 (579)
..++|.||+.+.|...+. ....+...++|++.++..
T Consensus 58 ~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 58 AQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence 358999999998854333 445555568999999863
No 242
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.14 E-value=2.4e+02 Score=29.86 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCeEEEE-----ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCC
Q 008048 280 ILCAQMVRWLREQKKLNIYV-----EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKG 354 (579)
Q Consensus 280 ~l~~eii~~L~e~~gi~V~v-----e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~ 354 (579)
+-..++++.|.++ +..|++ |...++++...-.....+..-.+-.+...+...+|+ +||.|.-.++.|..+.
T Consensus 195 e~~~~l~~~l~~~-~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l--~I~~DSg~~HlAaA~~- 270 (334)
T COG0859 195 EHYAELAELLIAK-GYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL--VIGNDSGPMHLAAALG- 270 (334)
T ss_pred HHHHHHHHHHHHC-CCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE--EEccCChHHHHHHHcC-
Confidence 4467777777764 466665 111222222111000001111112334455677888 7899999999998764
Q ss_pred CCCcEEEEc
Q 008048 355 PVPPIVPFS 363 (579)
Q Consensus 355 ~~~PILGIN 363 (579)
+|++||=
T Consensus 271 --~P~I~iy 277 (334)
T COG0859 271 --TPTIALY 277 (334)
T ss_pred --CCEEEEE
Confidence 5888864
No 243
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=27.04 E-value=80 Score=32.71 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=41.0
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC-----------------CCccCcCC---CcchHHHHHHHH
Q 008048 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-----------------SLGFMTPF---HSEHYKDYLDSV 385 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG-----------------~LGFLt~~---~~edi~~~L~~i 385 (579)
+.++...+|++|+-+|=+|++.++. .++|++.+..| ..|++.+. +++.+.++|..+
T Consensus 246 ~~~~~~~~d~~i~~~g~~~~~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 246 MAAAYAAADLVICRAGASTVAELAA----AGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred HHHHHHhCCEEEECCCHHHHHHHHH----hCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHH
Confidence 4556778999999888667766653 45799887542 24666653 377888888888
Q ss_pred HcC
Q 008048 386 LRG 388 (579)
Q Consensus 386 l~G 388 (579)
++.
T Consensus 322 l~~ 324 (357)
T PRK00726 322 LSD 324 (357)
T ss_pred HcC
Confidence 764
No 244
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=26.88 E-value=69 Score=32.66 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=40.4
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC----------------CCCccCcCC---CcchHHHHHHHHH
Q 008048 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------------GSLGFMTPF---HSEHYKDYLDSVL 386 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl----------------G~LGFLt~~---~~edi~~~L~~il 386 (579)
+.++...+|++|+-+|=.|++-|+. .++|++.++. +..|++.+. +++.+.++|..++
T Consensus 244 ~~~~l~~ad~~v~~~g~~~l~Ea~~----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 244 MAAAYAAADLVISRAGASTVAELAA----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred HHHHHHhCCEEEECCChhHHHHHHH----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHH
Confidence 4566778999999988345666653 4678887754 235777653 3777888888777
Q ss_pred cC
Q 008048 387 RG 388 (579)
Q Consensus 387 ~G 388 (579)
+.
T Consensus 320 ~~ 321 (348)
T TIGR01133 320 LD 321 (348)
T ss_pred cC
Confidence 53
No 245
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.78 E-value=2.8e+02 Score=27.15 Aligned_cols=87 Identities=11% Similarity=0.050 Sum_probs=50.2
Q ss_pred EEEEEEcC--CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCc
Q 008048 266 TVVILTKP--NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGD 342 (579)
Q Consensus 266 ~V~IV~Kp--~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGD 342 (579)
+|+++.+- .++-...+...+.+.+.+ .|+.+.+-..-....... ...+. ....++|.+|+.+.+
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~~v~~~~~~~~~~~~~------------~~~i~~l~~~~vdgiii~~~~ 67 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGVDVEYRGPETFDVADM------------ARLIEAAIAAKPDGIVVTIPD 67 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCEEEEECCCCCCHHHH------------HHHHHHHHHhCCCEEEEeCCC
Confidence 46777653 456666677777777765 577776532110000000 00111 123579999999988
Q ss_pred hH-HHHHHHhcCCCCCcEEEEcCC
Q 008048 343 GT-VLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 343 GT-lL~AAr~~~~~~~PILGINlG 365 (579)
.+ +..+.+.+...++|++.++..
T Consensus 68 ~~~~~~~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 68 PDALDPAIKRAVAAGIPVISFNAG 91 (271)
T ss_pred hHHhHHHHHHHHHCCCeEEEeCCC
Confidence 76 334455555667999999853
No 246
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=26.45 E-value=2.5e+02 Score=30.86 Aligned_cols=101 Identities=19% Similarity=0.337 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccc-hhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCC
Q 008048 279 QILCAQMVRWLREQKKLNIYVEPR-VRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVP 357 (579)
Q Consensus 279 ~~l~~eii~~L~e~~gi~V~ve~~-va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~ 357 (579)
.+..+.+++-|.+-+.--++.-+. ....+ ..+ ..+..|-+-.++-. ..++++.|+=||-|+++-|+. +++
T Consensus 292 ~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l-~~n---~~~~~W~PQ~~lL~-hp~v~~fitHgG~~s~~Ea~~----~gv 362 (500)
T PF00201_consen 292 EEKLKEIAEAFENLPQRFIWKYEGEPPENL-PKN---VLIVKWLPQNDLLA-HPRVKLFITHGGLNSTQEALY----HGV 362 (500)
T ss_dssp HHHHHHHHHHHHCSTTEEEEEETCSHGCHH-HTT---EEEESS--HHHHHT-STTEEEEEES--HHHHHHHHH----CT-
T ss_pred HHHHHHHHHHHhhCCCcccccccccccccc-cce---EEEeccccchhhhh-cccceeeeeccccchhhhhhh----ccC
Confidence 344677888887544422332222 11111 111 13455654333211 357899999999999999885 468
Q ss_pred cEEEEcC--------------CCCcc-C--cCCCcchHHHHHHHHHcCC
Q 008048 358 PIVPFSL--------------GSLGF-M--TPFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 358 PILGINl--------------G~LGF-L--t~~~~edi~~~L~~il~G~ 389 (579)
|++++.+ | +|- | .+++.+++.++|.++++.+
T Consensus 363 P~l~~P~~~DQ~~na~~~~~~G-~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 363 PMLGIPLFGDQPRNAARVEEKG-VGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp -EEE-GCSTTHHHHHHHHHHTT-SEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred CccCCCCcccCCccceEEEEEe-eEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 9999965 3 232 2 3466788999999998765
No 247
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=26.45 E-value=46 Score=30.28 Aligned_cols=35 Identities=29% Similarity=0.211 Sum_probs=26.0
Q ss_pred CccEEEEEeCchH---------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 332 KVDLVVTLGGDGT---------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 332 ~~DLVIvLGGDGT---------lL~AAr~~~~~~~PILGINlG~ 366 (579)
++|.+|+.||.++ ++...+.+.....||.+|-.|.
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 5899999999764 3344555556778999998764
No 248
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=26.39 E-value=46 Score=30.86 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=26.4
Q ss_pred CccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 332 KVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 332 ~~DLVIvLGGDGT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
++|.||+.||.|. ++...+.+.....||.+|-.|.
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~ 102 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP 102 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 5899999999763 3344455556778999999886
No 249
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=26.26 E-value=77 Score=35.87 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC-----------CC--cc---CcCCCcchHHHHHHHHHcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-----------SL--GF---MTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG-----------~L--GF---Lt~~~~edi~~~L~~il~G 388 (579)
.+++++|+=||=||+..|+. .++|++++.+. +. |- ..+++.+++.++|.++++.
T Consensus 363 p~v~~fItHGG~~s~~Eal~----~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~ 432 (507)
T PHA03392 363 KNVKAFVTQGGVQSTDEAID----ALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN 432 (507)
T ss_pred CCCCEEEecCCcccHHHHHH----cCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC
Confidence 57999999999999999885 46899998651 12 21 1345677888888888764
No 250
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.23 E-value=7e+02 Score=25.28 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=63.6
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEE----Ee
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVT----LG 340 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIv----LG 340 (579)
+|+||- +++ .+...+..+|.. .|..|..-.+.... .... .. +|+||. -+
T Consensus 2 ~ILive--Dd~---~i~~~l~~~L~~-~g~~v~~~~~~~~a-------------------~~~~~~~-~dlviLD~~lP~ 55 (229)
T COG0745 2 RILLVE--DDP---ELAELLKEYLEE-EGYEVDVAADGEEA-------------------LEAAREQ-PDLVLLDLMLPD 55 (229)
T ss_pred eEEEEc--CCH---HHHHHHHHHHHH-CCCEEEEECCHHHH-------------------HHHHhcC-CCEEEEECCCCC
Confidence 455553 333 345667777865 57877654332111 1111 13 788886 46
Q ss_pred Cch-HHHHHHHhcCCCCCcEEEE-------------cCCCCccCcC-CCcchHHHHHHHHHcCCce
Q 008048 341 GDG-TVLWAASIFKGPVPPIVPF-------------SLGSLGFMTP-FHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 341 GDG-TlL~AAr~~~~~~~PILGI-------------NlG~LGFLt~-~~~edi~~~L~~il~G~y~ 391 (579)
+|| ++++-.|...+..+||+=+ +.|---|++. |++.++...+..++...+.
T Consensus 56 ~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 56 LDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 899 6777777446678888766 4466667664 9999999999998876544
No 251
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.98 E-value=4.3e+02 Score=25.72 Aligned_cols=63 Identities=21% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHhhhCCCccEEEEEeC----chHHHHHHHhcCCCCCcEEEEcCC---------CCccCcC-CCcchHHHHHHHHHcCC
Q 008048 324 KEILLLHTKVDLVVTLGG----DGTVLWAASIFKGPVPPIVPFSLG---------SLGFMTP-FHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 324 ~~~~~l~~~~DLVIvLGG----DGTlL~AAr~~~~~~~PILGINlG---------~LGFLt~-~~~edi~~~L~~il~G~ 389 (579)
.++..+...+|++|.... =++++-++ ..++|+++-+.| ..||+.+ -+++++.++|..+++..
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~----~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAM----ACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHH----hcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 445666778999886532 23333333 356799987753 4456554 46778888888888754
Q ss_pred c
Q 008048 390 I 390 (579)
Q Consensus 390 y 390 (579)
.
T Consensus 346 ~ 346 (377)
T cd03798 346 W 346 (377)
T ss_pred H
Confidence 3
No 252
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=25.86 E-value=93 Score=32.98 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCC--eEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKK--LNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~g--i~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+++++++....-+ .+.+.+++++|+++ . .++-+.. ..++ .+.+-.....++...+|++|++||
T Consensus 153 ~~~v~vvsQTT~~--~~~~~~i~~~l~~~-~~~~~~~~~n----------TIC~--AT~~RQ~a~~~la~~vD~miVVGg 217 (280)
T TIGR00216 153 EDLLGVVSQTTLS--QEDTKEIVAELKAR-VPQKEVPVFN----------TICY--ATQNRQDAVKELAPEVDLMIVIGG 217 (280)
T ss_pred CCcEEEEEcCCCc--HHHHHHHHHHHHHh-CCCcCCCCCC----------Cccc--ccHHHHHHHHHHHhhCCEEEEECC
Confidence 5779999876543 45577888888752 2 2221111 1111 011112346677889999999999
Q ss_pred c
Q 008048 342 D 342 (579)
Q Consensus 342 D 342 (579)
-
T Consensus 218 ~ 218 (280)
T TIGR00216 218 K 218 (280)
T ss_pred C
Confidence 6
No 253
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=25.75 E-value=1.3e+02 Score=32.20 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=38.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
.++++|+....-. .+-+.+++++|+++ +.+.+-.-.. .++ .+..-.....++...+|++|++||-
T Consensus 155 ~~~v~vvsQTT~~--~~~~~~i~~~l~~~~~~~~v~~~nT----------IC~--aT~~RQ~a~~~La~~vD~miVVGg~ 220 (298)
T PRK01045 155 PDKLALVTQTTLS--VDDTAEIIAALKERFPEIQGPPKDD----------ICY--ATQNRQEAVKELAPQADLVIVVGSK 220 (298)
T ss_pred CCcEEEEEcCCCc--HHHHHHHHHHHHHhCcCcccCCCCC----------cch--hhHHHHHHHHHHHhhCCEEEEECCC
Confidence 4789999986554 34577888888753 2222200111 110 0111123456778899999999997
Q ss_pred h
Q 008048 343 G 343 (579)
Q Consensus 343 G 343 (579)
-
T Consensus 221 ~ 221 (298)
T PRK01045 221 N 221 (298)
T ss_pred C
Confidence 3
No 254
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.74 E-value=64 Score=29.42 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=29.7
Q ss_pred CccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC
Q 008048 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 332 ~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG 365 (579)
.+|.+|.+.|||-++-+++.+...+..|..+...
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 6899999999999999999998888887776654
No 255
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.65 E-value=1.1e+02 Score=29.88 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=23.4
Q ss_pred CCccEEEEEeCc---hH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGD---GT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGD---GT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||+-||. .+ ++...+.+.....||+||-+|.
T Consensus 36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~ 82 (205)
T PRK13141 36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGM 82 (205)
T ss_pred ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHH
Confidence 458988876642 22 2344444445678999999885
No 256
>PLN02734 glycyl-tRNA synthetase
Probab=25.51 E-value=1.9e+02 Score=34.56 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=63.5
Q ss_pred EeeecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccE
Q 008048 256 ISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDL 335 (579)
Q Consensus 256 ~~l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DL 335 (579)
+.+-..-.|-+|.|+.-..++.....+.+|...|++ .|+.+.++..- ..++.. + . ..-..++-+
T Consensus 562 L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~-~GIrVelDd~~-~SIGKR---------y---r--rADeiGIPf 625 (684)
T PLN02734 562 FRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTA-AGISHKIDITG-TSIGKR---------Y---A--RTDELGVPF 625 (684)
T ss_pred EecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHh-CCCEEEEECCC-CCHhHH---------H---H--HHHHcCCCE
Confidence 333334557888887666666788899999999985 68988886431 111110 0 0 011246889
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceE
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI 392 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~I 392 (579)
+|+||.|||+----+ ..| =-..+..+++.+.|..+++|.-.+
T Consensus 626 ~ItIG~dgtVTIRdR------------dsg---eQ~rV~ldeLv~~I~~li~~~~~w 667 (684)
T PLN02734 626 AVTVDSDGSVTIRER------------DSK---DQVRVPVEEVASVVKDLTDGRMTW 667 (684)
T ss_pred EEEECCCCeEEEEEC------------CCC---ceEEeeHHHHHHHHHHHHcCCCCH
Confidence 999998776531111 011 112234577788888888876444
No 257
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=24.81 E-value=3e+02 Score=26.58 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=50.0
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCchH
Q 008048 267 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~-Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDGT 344 (579)
|+|+. ..+++-...+...+.+++++ .|+.+.+...-.. .. ... ..-...+ ..++|-+|..+++..
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-----~~--~~~-----~~~~~~l~~~~vdgiii~~~~~~ 68 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRD-TGYQLVIEPCDSG-----SP--DLA-----ERVRALLQRSRVDGVILTPPLSD 68 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHh-CCCeEEEEeCCCC-----ch--HHH-----HHHHHHHHHCCCCEEEEeCCCCC
Confidence 56665 44666677777888888875 5777665421100 00 000 0011112 357899999988753
Q ss_pred HHHHHHhcCCCCCcEEEEcC
Q 008048 345 VLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINl 364 (579)
.....+.+...++|++-|+.
T Consensus 69 ~~~~~~~~~~~~ipvv~i~~ 88 (270)
T cd01545 69 NPELLDLLDEAGVPYVRIAP 88 (270)
T ss_pred ccHHHHHHHhcCCCEEEEec
Confidence 34445555667899998875
No 258
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=24.72 E-value=61 Score=27.69 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=30.3
Q ss_pred ccHHHHHHHhhcCCCCCCCchhhhhHHHHHHHHH
Q 008048 36 QSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAK 69 (579)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (579)
..|+|+.|+|-..|-+.+=.|.-++-|.|+++-.
T Consensus 2 ~PErA~LE~l~~~p~~~s~e~a~~l~egL~nLrp 35 (69)
T PF11459_consen 2 VPERAILELLSEVPKRQSFEEADELMEGLRNLRP 35 (69)
T ss_pred cHHHHHHHHHHhCCccCCHHHHHHHHHHHhhcCH
Confidence 3799999999999999999999999999998743
No 259
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=24.65 E-value=3e+02 Score=26.84 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=37.7
Q ss_pred HhhhCCCccEEEEEeCc----hHHHHHHHhcCCCCCcEEEEcCCCC-------ccCcCC-CcchHHHHHHHHHcC
Q 008048 326 ILLLHTKVDLVVTLGGD----GTVLWAASIFKGPVPPIVPFSLGSL-------GFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGD----GTlL~AAr~~~~~~~PILGINlG~L-------GFLt~~-~~edi~~~L~~il~G 388 (579)
+..+...+|++|.-... ++++-|. ..+.||+.-+.|.. |++.+. +++++.+.|..+++.
T Consensus 262 ~~~~~~~adi~v~ps~~e~~~~~~~Ea~----a~g~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 262 VPALLNALDVFVLSSLSEGFPNVLLEAM----ACGLPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred HHHHHHhCCEEEeCCccccCCcHHHHHH----hcCCCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHHHHHhC
Confidence 44566778988865443 3555444 24579998887643 554443 567788888887764
No 260
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=24.60 E-value=6.9e+02 Score=24.87 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHhhhCCCccEEEEEeC-------chHHHHHHHhcCCCCCcEEEEcCCC---------CccCcCC-CcchHHHHHHHHH
Q 008048 324 KEILLLHTKVDLVVTLGG-------DGTVLWAASIFKGPVPPIVPFSLGS---------LGFMTPF-HSEHYKDYLDSVL 386 (579)
Q Consensus 324 ~~~~~l~~~~DLVIvLGG-------DGTlL~AAr~~~~~~~PILGINlG~---------LGFLt~~-~~edi~~~L~~il 386 (579)
.++..+...+|+++.-.. +|.=+.....+ ..++|+++.+.|. .|++.+- +++++.++|..++
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~-a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~ 325 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAM-AMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLL 325 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHH-HcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 455666778998887321 33222222222 3568999887643 5776654 6788888888887
Q ss_pred cC
Q 008048 387 RG 388 (579)
Q Consensus 387 ~G 388 (579)
+.
T Consensus 326 ~~ 327 (355)
T cd03799 326 DD 327 (355)
T ss_pred hC
Confidence 64
No 261
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=24.46 E-value=3.4e+02 Score=30.40 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred cCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccch--hHhhhhcCCcccccccccc--hHHHhhhCCCccE
Q 008048 260 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRV--RAELLTESSYFSFVQTWKD--EKEILLLHTKVDL 335 (579)
Q Consensus 260 W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~v--a~~l~~~~~~~~~i~~~~~--~~~~~~l~~~~DL 335 (579)
.+..+.+++++++ ....+...++++-| +.++.-+.... ...+..-... +.+..+.. ...+.++..++|+
T Consensus 278 ~~r~~~~~l~~t~---s~~I~~i~~Lv~~l---Pd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dl 350 (438)
T TIGR02919 278 DNKYRKQALILTN---SDQIEHLEEIVQAL---PDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDI 350 (438)
T ss_pred ccCCcccEEEECC---HHHHHHHHHHHHhC---CCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccE
Confidence 3556778999993 34444444454443 55554432211 1222111111 11212211 1246677889999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcC--CC-----CccCcCC-CcchHHHHHHHHHc
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSL--GS-----LGFMTPF-HSEHYKDYLDSVLR 387 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINl--G~-----LGFLt~~-~~edi~~~L~~il~ 387 (579)
.+.+-=..=+..+...+..+++||+|++. |. -|+|.+. +++++.++|..++.
T Consensus 351 yLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g~l~~~~~~~~m~~~i~~lL~ 410 (438)
T TIGR02919 351 YLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNEVDQLISKLKDLLN 410 (438)
T ss_pred EEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccCCceecCCCHHHHHHHHHHHhc
Confidence 98876444455555555678999999875 32 2666543 34555566665554
No 262
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=24.41 E-value=3.8e+02 Score=26.26 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=50.3
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEcc-chhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEP-RVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~-~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
+|++|.+..++-..++...+.+.+.+ .|+.+.+-. .... .... ..-+. -+..++|-+|+.+.|-
T Consensus 1 ~i~~v~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vDgiIi~~~~~ 66 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKE-LGVDVEFVVPQQGT-VNAQ------------LRMLEDLIAEGVDGIAISPIDP 66 (271)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHH-cCCeEEEeCCCCCC-HHHH------------HHHHHHHHhcCCCEEEEecCCh
Confidence 47888877777778888888888876 577766531 1100 0000 00111 1235799999998874
Q ss_pred H-HHHHHHhcCCCCCcEEEEcC
Q 008048 344 T-VLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 344 T-lL~AAr~~~~~~~PILGINl 364 (579)
. .....+.+.. .+|++-++.
T Consensus 67 ~~~~~~l~~~~~-~ipvV~~~~ 87 (271)
T cd06314 67 KAVIPALNKAAA-GIKLITTDS 87 (271)
T ss_pred hHhHHHHHHHhc-CCCEEEecC
Confidence 3 2233344445 789999875
No 263
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.35 E-value=3.2e+02 Score=26.66 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=57.6
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCchH
Q 008048 267 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~-Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGDGT 344 (579)
|+||. ..+++-..++...+.+.+++ .|+.+.+...-... ... ...++.+ ..++|-||+.+++..
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~l~~~~vdgii~~~~~~~ 67 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRA-AGYSLLIANSLNDP-ERE------------LEILRSFEQRRMDGIIIAPGDER 67 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHH-cCCEEEEEeCCCCh-HHH------------HHHHHHHHHcCCCEEEEecCCCC
Confidence 66776 45677777788888888876 57877653211000 000 0111122 357999999987532
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHH---HHHHHHHcC
Q 008048 345 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYK---DYLDSVLRG 388 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~---~~L~~il~G 388 (579)
.--..+.+...++|++-++...-..+.-+..++.. .+.+.+++.
T Consensus 68 ~~~~~~~~~~~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~ 114 (269)
T cd06281 68 DPELVDALASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISL 114 (269)
T ss_pred cHHHHHHHHhCCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHC
Confidence 11223334445789999986421122224444433 344555543
No 264
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=23.78 E-value=6.3e+02 Score=24.34 Aligned_cols=109 Identities=13% Similarity=-0.006 Sum_probs=57.4
Q ss_pred EEEEE-cCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 008048 267 VVILT-KPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~-Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDGT 344 (579)
|+||. ..+++-..++...+.+.+.+ .|+.+.+-..-....... ..-+.. ...++|.||+.+.+-.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~vdgiii~~~~~~ 68 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAARE-AGYAVTLSMLAEADEEAL------------RAAVRRLLAQRVDGVIVNAPLDD 68 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHH-CCCeEEEEeCCCCchHHH------------HHHHHHHHhcCCCEEEEeCCCCC
Confidence 56665 45666677788888888886 467665422100000000 011111 2357999999887654
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcch---HHHHHHHHHcCC
Q 008048 345 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEH---YKDYLDSVLRGP 389 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG~LGFLt~~~~ed---i~~~L~~il~G~ 389 (579)
-. ....+...++|++-|+.-.-.-+.-+..++ ...+.+.+.+..
T Consensus 69 ~~-~~~~~~~~~ipvv~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g 115 (264)
T cd01574 69 AD-AALAAAPADVPVVFVDGSPSPRVSTVSVDQEGGARLATEHLLELG 115 (264)
T ss_pred hH-HHHHHHhcCCCEEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHCC
Confidence 44 233334567999999863111122233343 234455555543
No 265
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=23.63 E-value=3.7e+02 Score=26.23 Aligned_cols=86 Identities=8% Similarity=0.035 Sum_probs=48.0
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 008048 267 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDGT 344 (579)
||++.. ..++-...+...+.+.+.+..|+.+.+-..... .... ...+. .+..++|.||+.+.+-+
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~------------~~~i~~~~~~~vdgiii~~~~~~ 68 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPDVELIIADAADD-NSKQ------------VADIENFIRQGVDLLIISPNEAA 68 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCCC-HHHH------------HHHHHHHHHhCCCEEEEecCchh
Confidence 566653 355656677788888887644777765321000 0000 00111 12457999999988744
Q ss_pred HH-HHHHhcCCCCCcEEEEcCC
Q 008048 345 VL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 345 lL-~AAr~~~~~~~PILGINlG 365 (579)
.+ .....+...++|++-++..
T Consensus 69 ~~~~~~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 69 PLTPVVEEAYRAGIPVILLDRK 90 (270)
T ss_pred hchHHHHHHHHCCCCEEEeCCC
Confidence 22 2223334467899999853
No 266
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=23.25 E-value=3.7e+02 Score=25.98 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHhhhCCCccEEEEEe----CchHHHHHHHhcCCCCCcEEEEcC---------CCCccCcCCC-cchHHHHHHHHHcC
Q 008048 324 KEILLLHTKVDLVVTLG----GDGTVLWAASIFKGPVPPIVPFSL---------GSLGFMTPFH-SEHYKDYLDSVLRG 388 (579)
Q Consensus 324 ~~~~~l~~~~DLVIvLG----GDGTlL~AAr~~~~~~~PILGINl---------G~LGFLt~~~-~edi~~~L~~il~G 388 (579)
.++..+...+|++|... .-++++-|.. .+.||+.-+. |..|++.+.. ++++.+.|.++++.
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~----~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGLVLLEAMA----AGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccchHHHHHH----cCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 44566677899998643 3345555442 4678988874 4567766654 78888888887664
No 267
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=23.22 E-value=2e+02 Score=27.83 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCccEEEEEeCchHHHHH----------HHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVLWA----------ASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~A----------Ar~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||.-+.... .+.+...+.||+||-.|.
T Consensus 34 ~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~ 79 (183)
T cd01749 34 EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGL 79 (183)
T ss_pred ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHH
Confidence 468999999988765532 233334578999998885
No 268
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=23.02 E-value=5.4e+02 Score=25.77 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=51.1
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 263 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 263 ~pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
..++|+++.. ..++-..++...+.+.+++ .|+.+.+...-.. .... ..-++. ...++|.+|+.+
T Consensus 25 ~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~-~G~~~~~~~~~~d-~~~~------------~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 25 AKDTIALVVSTLNNPFFVSLKDGAQKEADK-LGYNLVVLDSQNN-PAKE------------LANVQDLTVRGTKILLINP 90 (295)
T ss_pred cCCeEEEEecCCCChHHHHHHHHHHHHHHH-cCCeEEEecCCCC-HHHH------------HHHHHHHHHcCCCEEEEcC
Confidence 5678998875 4566677777788888876 5787765321000 0000 001111 234689888766
Q ss_pred CchHH-HHHHHhcCCCCCcEEEEcC
Q 008048 341 GDGTV-LWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 341 GDGTl-L~AAr~~~~~~~PILGINl 364 (579)
.|-.. ......+...++|++-++.
T Consensus 91 ~~~~~~~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 91 TDSDAVGNAVKMANQANIPVITLDR 115 (295)
T ss_pred CChHHHHHHHHHHHHCCCCEEEEcc
Confidence 65332 3444555556789999985
No 269
>PF08947 BPS: BPS (Between PH and SH2) ; InterPro: IPR015042 The BPS (Between PH and SH2) domain, comprised of 2 beta strands and a C-terminal helix, is an approximately 45 residue region found in the adaptor proteins Grb7/10/14 that mediates inhibition of the tyrosine kinase domain of the insulin receptor by binding of the N-terminal portion of the BPS domain to the substrate peptide groove of the kinase, acting as a pseudosubstrate inhibitor []. ; PDB: 2AUH_B.
Probab=22.91 E-value=68 Score=25.75 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=13.8
Q ss_pred HHHhhhHhHHHHHHHHHHHHH
Q 008048 73 RAAEGKAAAQAEAAEWKRRFE 93 (579)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ 93 (579)
.-+|.+++|+.|.--|+||-.
T Consensus 23 nP~EA~s~a~eEg~~WRrr~~ 43 (49)
T PF08947_consen 23 NPKEAQSAALEEGQSWRRRSS 43 (49)
T ss_dssp -HHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHhcc
Confidence 446777899999999998754
No 270
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.67 E-value=4.8e+02 Score=25.35 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=48.4
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 008048 267 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDGT 344 (579)
|+++.. ..++-...+...+.+.+.+ .|+.+.+-......- .. ..-+. .+..++|.+|+.+.|..
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~-~~------------~~~i~~~~~~~~dgiii~~~~~~ 67 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKA-LGYDAVELSAENSAK-KE------------LENLRTAIDKGVSGIIISPTNSS 67 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHh-cCCeEEEecCCCCHH-HH------------HHHHHHHHhcCCCEEEEcCCchh
Confidence 565553 4566666667777777765 477766532210000 00 00111 12467999998887754
Q ss_pred H-HHHHHhcCCCCCcEEEEcCC
Q 008048 345 V-LWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 345 l-L~AAr~~~~~~~PILGINlG 365 (579)
. ....+.+...++|++-++..
T Consensus 68 ~~~~~l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 68 AAVTLLKLAAQAKIPVVIADIG 89 (277)
T ss_pred hhHHHHHHHHHCCCCEEEEecC
Confidence 3 34445555678999988864
No 271
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.54 E-value=2.3e+02 Score=31.17 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=48.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCC-CccEEEEEe
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHT-KVDLVVTLG 340 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e-~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~-~~DLVIvLG 340 (579)
-|++||||+-+.......+. +-+.+ .+.+++++-+.... ++....+.+ ..+..+.. .+|+||+.=
T Consensus 134 ~p~~I~viTs~~gAa~~D~~----~~~~~r~p~~~~~~~~~~vQ---G~~A~~~i~------~al~~~~~~~~Dviii~R 200 (438)
T PRK00286 134 FPKRIGVITSPTGAAIRDIL----TVLRRRFPLVEVIIYPTLVQ---GEGAAASIV------AAIERANARGEDVLIVAR 200 (438)
T ss_pred CCCEEEEEeCCccHHHHHHH----HHHHhcCCCCeEEEecCcCc---CccHHHHHH------HHHHHhcCCCCCEEEEec
Confidence 39999999999887665444 44443 24567776553221 110000000 11111111 279999987
Q ss_pred CchHHH--------HHHHhcCCCCCcEEE
Q 008048 341 GDGTVL--------WAASIFKGPVPPIVP 361 (579)
Q Consensus 341 GDGTlL--------~AAr~~~~~~~PILG 361 (579)
|=|-+- ..++.+....+||+.
T Consensus 201 GGGS~eDL~~Fn~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 201 GGGSLEDLWAFNDEAVARAIAASRIPVIS 229 (438)
T ss_pred CCCCHHHhhccCcHHHHHHHHcCCCCEEE
Confidence 777753 345666677889865
No 272
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=22.37 E-value=5.6e+02 Score=24.97 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=48.8
Q ss_pred CEEEEEEc--------CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccE
Q 008048 265 QTVVILTK--------PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDL 335 (579)
Q Consensus 265 k~V~IV~K--------p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DL 335 (579)
++|+|+.- .+++-...+.+.+.+.+++ .|+.+.+-..-... . ..-...+ ..++|-
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~-~g~~~~v~~~~~~~---~------------~~~~~~l~~~~~dg 67 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAE-RGYDLLLSFVSSPD---R------------DWLARYLASGRADG 67 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHH-cCCEEEEEeCCchh---H------------HHHHHHHHhCCCCE
Confidence 57888873 2444566677778888875 57776653210000 0 0001112 357999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcCC
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINlG 365 (579)
||+.+.+..- .+.+.+...++||+.|+..
T Consensus 68 iii~~~~~~~-~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 68 VILIGQHDQD-PLPERLAETGLPFVVWGRP 96 (275)
T ss_pred EEEeCCCCCh-HHHHHHHhCCCCEEEECCc
Confidence 9998865432 2344555678999999863
No 273
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=22.32 E-value=4.7e+02 Score=26.38 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=50.3
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
+|+++.. ..++-...+...+.+.+.+ .|+.+.+ ........ .. ...+.. +..++|-||+.+.+
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~-~g~~v~~~~~~~~d~~-~~------------~~~i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKE-LGVDAIYVGPTTADAA-GQ------------VQIIEDLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHH-hCCeEEEECCCCCCHH-HH------------HHHHHHHHhcCCCEEEEecCC
Confidence 4676664 5667677777777777776 5777764 22111000 00 011111 24579999999887
Q ss_pred hHHH-HHHHhcCCCCCcEEEEcCC
Q 008048 343 GTVL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 343 GTlL-~AAr~~~~~~~PILGINlG 365 (579)
-+.+ ...+.+...++|++-|+..
T Consensus 67 ~~~~~~~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 67 PDALEPVLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5532 3344555678999999853
No 274
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=22.28 E-value=66 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGDGT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
..++|++|+.||+++ ++...+.+.....+|.+|-.|.
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~ 106 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGA 106 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHH
Confidence 357899999999876 4556666666788999998764
No 275
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=22.16 E-value=91 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCccEEEEEeCchH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
..+|++|+.||.+. ++...+.+.....||.++..|.
T Consensus 61 ~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~ 104 (183)
T cd03139 61 PDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGA 104 (183)
T ss_pred CCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHH
Confidence 36899999999775 4445556666788999998875
No 276
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.13 E-value=5.1e+02 Score=25.85 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=49.0
Q ss_pred EEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCchH
Q 008048 267 VVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDGT 344 (579)
|+|+.. ..++-...+...+.+-+.+ .|+.+.+-...... ... ...+. .+..++|-||+.+.|++
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~i~~~~~~~vdgiii~~~~~~ 67 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKE-LGAEVIVQNANGDP-AKQ------------ISQIENMIAKGVDVLVIAPVDGE 67 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCCCH-HHH------------HHHHHHHHHcCCCEEEEecCChh
Confidence 666664 4555566666777777765 57877763321000 000 01111 23467999999998876
Q ss_pred HH-HHHHhcCCCCCcEEEEcCC
Q 008048 345 VL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 345 lL-~AAr~~~~~~~PILGINlG 365 (579)
.+ ...+.+...++||+.++..
T Consensus 68 ~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 68 ALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred hHHHHHHHHHHCCCCEEEECCC
Confidence 32 3334444567899999864
No 277
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.11 E-value=4.1e+02 Score=26.95 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=37.4
Q ss_pred HhhhCCCccEEEEE---eCch-HHHHHHHhcCCCCCcEEEEcC---------CCCccCcCC-CcchHHHHHHHHHc
Q 008048 326 ILLLHTKVDLVVTL---GGDG-TVLWAASIFKGPVPPIVPFSL---------GSLGFMTPF-HSEHYKDYLDSVLR 387 (579)
Q Consensus 326 ~~~l~~~~DLVIvL---GGDG-TlL~AAr~~~~~~~PILGINl---------G~LGFLt~~-~~edi~~~L~~il~ 387 (579)
+.++...+|++|.- .|=| +++-|.. .++|++.-+. |..||+.+. +++++.+.+..+++
T Consensus 264 ~~~~~~~~d~~v~ps~~E~~~~~~~EAma----~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 264 VEELLSIADLFLLPSEKESFGLAALEAMA----CGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred HHHHHHhcCEEEeCCCcCCCccHHHHHHH----cCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 44566778988854 2333 5555442 4678988765 456887664 56777777777765
No 278
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.57 E-value=4.6e+02 Score=25.67 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=58.7
Q ss_pred EEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 266 TVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
+||++.. ..++-...+...+.+.+++ .|+++.+-..... ...+ ...++ -+..++|.||+.+.|-
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~-~g~~v~~~~~~~~-~~~~------------~~~i~~~~~~~~Dgiii~~~~~ 66 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKA-LGYELISTDAQGD-LTKQ------------IADVEDLLTRGVNVLIINPVDP 66 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHH-cCCEEEEEcCCCC-HHHH------------HHHHHHHHHcCCCEEEEecCCc
Confidence 3566554 3566677777888888876 5787765321100 0000 00111 1246799999988774
Q ss_pred H-HHHHHHhcCCCCCcEEEEcCCCC---ccCcCCCcchH---HHHHHHHHc
Q 008048 344 T-VLWAASIFKGPVPPIVPFSLGSL---GFMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 344 T-lL~AAr~~~~~~~PILGINlG~L---GFLt~~~~edi---~~~L~~il~ 387 (579)
. +....+.+...++||+-|+...- ..+.-+..++. ..+.+.+.+
T Consensus 67 ~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~ 117 (282)
T cd06318 67 EGLVPAVAAAKAAGVPVVVVDSSINLEAGVVTQVQSSNAKNGNLVGEWVVG 117 (282)
T ss_pred cchHHHHHHHHHCCCCEEEecCCCCCCcCeEEEEecCcHHHHHHHHHHHHH
Confidence 3 23444555567899999986421 23333444443 344555543
No 279
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=21.43 E-value=71 Score=30.74 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCccEEEEEeCch---------HHHHHHHhcCCCCCcEEEEcCCCCc
Q 008048 331 TKVDLVVTLGGDG---------TVLWAASIFKGPVPPIVPFSLGSLG 368 (579)
Q Consensus 331 ~~~DLVIvLGGDG---------TlL~AAr~~~~~~~PILGINlG~LG 368 (579)
.++|+|++.||.+ .++...+.+...+.||.+|-.|..-
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ 111 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPAT 111 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHH
Confidence 4789999999964 2666667777778899999999854
No 280
>PF15431 TMEM190: Transmembrane protein 190
Probab=21.23 E-value=56 Score=30.51 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=28.9
Q ss_pred CCccccccccccccccccccccchhhhhcccccCCccccccccccceeEEEeecccC
Q 008048 172 SQPVLLNQEREHSNRACLEHGICSHEVLQDAKDVDSNMVNNKIMKKASFKLSWRCKG 228 (579)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kasf~~~~~~~~ 228 (579)
-|...+++.-----+||-++|+|-||-. |..+.+|--..|.|-|.|
T Consensus 25 GQAAie~PnLCLrLrCCYrdGvCYhQRp-----------DEnmrrKHmWaL~wtC~g 70 (134)
T PF15431_consen 25 GQAAIENPNLCLRLRCCYRDGVCYHQRP-----------DENMRRKHMWALGWTCGG 70 (134)
T ss_pred CccccCCCcceeeeeeecccceeeccCc-----------chhHHHHHHHHHHHHHHh
Confidence 3433333333334469999999999843 224556666677777865
No 281
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=21.21 E-value=4.5e+02 Score=27.16 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHhhhCCCccEEEEEeC-c--hHHHHHHHhcCCCCCcEEEEcCC---------CCccCcCCCcchHHHHHHHHHcC
Q 008048 325 EILLLHTKVDLVVTLGG-D--GTVLWAASIFKGPVPPIVPFSLG---------SLGFMTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGG-D--GTlL~AAr~~~~~~~PILGINlG---------~LGFLt~~~~edi~~~L~~il~G 388 (579)
++..+...+|+++.--. + |..+ ...+ ..++||++.+.| .-|++.+-+++++.+.|..+++.
T Consensus 292 ~~~~~l~~ad~~l~~s~~E~~g~~~--lEAm-a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~ 364 (392)
T cd03805 292 QKELLLSSARALLYTPSNEHFGIVP--LEAM-YAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAND 364 (392)
T ss_pred HHHHHHhhCeEEEECCCcCCCCchH--HHHH-HcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhC
Confidence 34456677888875322 2 3222 2333 356899988763 46888777788888888887764
No 282
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.16 E-value=2.6e+02 Score=27.03 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE-EccchhH-hhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY-VEPRVRA-ELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~-ve~~va~-~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
.|+|++|+=..+|+ ..+..+.+||.+ +|.+|+ |.|..+. +++++.. ...+.++...+|+|.++==
T Consensus 16 ~K~IAvVG~S~~P~--r~sy~V~kyL~~-~GY~ViPVNP~~~~~eiLG~k~----------y~sL~dIpe~IDiVdvFR~ 82 (140)
T COG1832 16 AKTIAVVGASDKPD--RPSYRVAKYLQQ-KGYRVIPVNPKLAGEEILGEKV----------YPSLADIPEPIDIVDVFRR 82 (140)
T ss_pred CceEEEEecCCCCC--ccHHHHHHHHHH-CCCEEEeeCcccchHHhcCchh----------hhcHHhCCCCCcEEEEecC
Confidence 68899998655543 236789999986 577765 4665442 2222211 1245677789999999877
Q ss_pred chHHHHHHHhcCCCCCcEEEEcCC
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINlG 365 (579)
==-++..++.+...++.++=.-+|
T Consensus 83 ~e~~~~i~~eal~~~~kv~W~QlG 106 (140)
T COG1832 83 SEAAPEVAREALEKGAKVVWLQLG 106 (140)
T ss_pred hhhhHHHHHHHHhhCCCeEEEecC
Confidence 667777777776555555544444
No 283
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=20.95 E-value=3.6e+02 Score=23.17 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH-HhhhHhhhcCcccccccch
Q 008048 65 RTVAKALRRAAEGKAAAQAEAAEWKRRFELERA-RNLRLENKGNGICEKLRSW 116 (579)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 116 (579)
+++.++|++. .....+++|+....=... -|.-.+..| ....+.|.|
T Consensus 26 ~~~e~~L~~~-----~~~~~~~~W~~eN~eai~~~n~~ve~~G-~~~de~R~~ 72 (72)
T PRK13710 26 GLVNTAMQNE-----ARRLRAERWKAENREGMAEVARFIEMNG-SFADENRNW 72 (72)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHhcCCC
Confidence 4556666543 556778889865432222 444555555 445555555
No 284
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.67 E-value=3.3e+02 Score=24.79 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh--CCCccEEEEEeCchHHHHHHHhcCC
Q 008048 277 SVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDLVVTLGGDGTVLWAASIFKG 354 (579)
Q Consensus 277 ~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~~ 354 (579)
.....+..+++.|.+ .|.+|.+-..... .+... ..++|+|++-++..+..........
T Consensus 14 G~~~~~~~l~~~L~~-~g~~v~v~~~~~~-------------------~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~ 73 (229)
T cd01635 14 GVELVLLDLAKALAR-RGHEVEVVALLLL-------------------LLLRILRGFKPDVVHAHGYYPAPLALLLAARL 73 (229)
T ss_pred CchhHHHHHHHHHHH-cCCeEEEEEechH-------------------HHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhh
Confidence 555667888888875 4666655331111 01111 2579999999999888754222223
Q ss_pred CCCcEEEE
Q 008048 355 PVPPIVPF 362 (579)
Q Consensus 355 ~~~PILGI 362 (579)
..+|++-.
T Consensus 74 ~~~~~i~~ 81 (229)
T cd01635 74 LGIPLVLT 81 (229)
T ss_pred CCCCEEEE
Confidence 34565443
No 285
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.62 E-value=4.8e+02 Score=25.29 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=49.9
Q ss_pred EEEEEc-C-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeCch
Q 008048 267 VVILTK-P-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGGDG 343 (579)
Q Consensus 267 V~IV~K-p-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGGDG 343 (579)
|+++.. . +++-...+...+.+.+.+ .|+.+.+...-.. .... ..-+. .+..++|.+|+.+.|.
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiii~~~~~ 67 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEE-DGVEVIVLDANGD-VARQ------------AAQVEDLIAQKVDGIILWPTDG 67 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCcC-HHHH------------HHHHHHHHHcCCCEEEEecCCc
Confidence 565553 3 566677777888888876 5787776432100 0000 00011 1235799999998875
Q ss_pred HH-HHHHHhcCCCCCcEEEEcC
Q 008048 344 TV-LWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 344 Tl-L~AAr~~~~~~~PILGINl 364 (579)
+. ...++.+...++|++.+|.
T Consensus 68 ~~~~~~l~~~~~~~iPvV~~~~ 89 (275)
T cd06317 68 QAYIPGLRKAKQAGIPVVITNS 89 (275)
T ss_pred cccHHHHHHHHHCCCcEEEeCC
Confidence 43 3444555667899998875
No 286
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.54 E-value=3.2e+02 Score=26.92 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=36.0
Q ss_pred HhhcCCCCCCCchhhhhHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHh
Q 008048 44 ILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEWKRRFELERARN 99 (579)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (579)
-||+.-|. |...+|||||-..-+--|..-+-++..+.+.|+=...=.=|++|+
T Consensus 97 ~l~~~~IN---d~Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~ke~~~kEe~lr~ 149 (158)
T PF02731_consen 97 GLQDVEIN---DKFAKLSEALYIADRKAREEVRQRAEMQKELAEKEKEEKEEKLRE 149 (158)
T ss_pred ccCCcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777765 788899999998888777777777777666665433333333343
No 287
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=20.46 E-value=84 Score=20.13 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=11.5
Q ss_pred HHHHHHHhhhHhhh
Q 008048 92 FELERARNLRLENK 105 (579)
Q Consensus 92 ~~~~~~~~~~~~~~ 105 (579)
-||||++|-++++.
T Consensus 3 aeLerLknerH~hd 16 (17)
T PF12107_consen 3 AELERLKNERHDHD 16 (17)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccc
Confidence 38999999988763
No 288
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.37 E-value=4.5e+02 Score=25.27 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=47.8
Q ss_pred EEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCchH
Q 008048 267 VVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDGT 344 (579)
Q Consensus 267 V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDGT 344 (579)
|+++.+- .++-...+...+.+.+++ .|+.+++-..-.. .... ..-++. ...++|.+|+.+.+..
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~-~g~~~~~~~~~~~-~~~~------------~~~i~~~~~~~vdgiii~~~~~~ 67 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEE-AGYTVFLANSGED-VERQ------------EQLLSTMLEHGVAGIILCPAAGT 67 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHH-cCCeEEEecCCCC-hHHH------------HHHHHHHHHcCCCEEEEeCCCCc
Confidence 6677643 455555566667777765 4677665321000 0000 001111 2357899999987765
Q ss_pred HHHHHHhcCCCCCcEEEEcC
Q 008048 345 VLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINl 364 (579)
...+.+.+...++|++-++.
T Consensus 68 ~~~~~~~~~~~~ipvV~~~~ 87 (268)
T cd06289 68 SPDLLKRLAESGIPVVLVAR 87 (268)
T ss_pred cHHHHHHHHhcCCCEEEEec
Confidence 44455666667889998874
No 289
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=20.34 E-value=2.5e+02 Score=25.20 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCEEEEEeecCCCCCEEEEEeCCcc---cccCCCCEEEEEecCCcee
Q 008048 500 HVTLRVQIPFNSRSPAWASFDGKDR---KQLAPGDALVCSMAPWPVP 543 (579)
Q Consensus 500 ~~~I~I~v~~~sr~~a~vsiDGq~~---~~L~~GD~I~I~~S~~~v~ 543 (579)
+...+|++. +.......+=|+.+ ..+.+||.|.|..|++.+.
T Consensus 19 ~~~frV~Le--nG~~vla~isGKmR~~rIrIl~GD~V~VE~spYDlt 63 (87)
T PRK12442 19 DSRFRVTLE--NGVEVGAYASGRMRKHRIRILAGDRVTLELSPYDLT 63 (87)
T ss_pred CCEEEEEeC--CCCEEEEEeccceeeeeEEecCCCEEEEEECcccCC
Confidence 345556653 23456778888864 4788999999999998765
No 290
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.28 E-value=5.2e+02 Score=26.43 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=48.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++|+|++.. .+-.......+.+.+++ .|+++..+..+.. ....+ ...+.. ...++|.||+.|..
T Consensus 135 ~~~v~ii~~~-~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~----~~~d~--------~~~v~~l~~~~~d~v~~~~~~ 200 (340)
T cd06349 135 FKKVAILSVN-TDWGRTSADIFVKAAEK-LGGQVVAHEEYVP----GEKDF--------RPTITRLRDANPDAIILISYY 200 (340)
T ss_pred CcEEEEEecC-ChHhHHHHHHHHHHHHH-cCCEEEEEEEeCC----CCCcH--------HHHHHHHHhcCCCEEEEcccc
Confidence 5789999864 44566777888888875 5777654322111 00111 111122 24678999888776
Q ss_pred hHHHHHHHhcC--CCCCcEEEE
Q 008048 343 GTVLWAASIFK--GPVPPIVPF 362 (579)
Q Consensus 343 GTlL~AAr~~~--~~~~PILGI 362 (579)
+++....+.+. +..+|+++.
T Consensus 201 ~~~~~~~~~~~~~g~~~~~~~~ 222 (340)
T cd06349 201 NDGAPIARQARAVGLDIPVVAS 222 (340)
T ss_pred chHHHHHHHHHHcCCCCcEEcc
Confidence 55555444443 455677764
No 291
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=20.21 E-value=70 Score=32.19 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=25.9
Q ss_pred CCccEEEEEeCchH--------------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGT--------------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGT--------------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||+-||-.. ++...+.+...+.||+||-.|.
T Consensus 39 ~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 39 PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHH
Confidence 46899999998421 4444555556789999998874
No 292
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=20.10 E-value=60 Score=32.97 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCCChHHHHhhcCCCCCCCCCCe
Q 008048 457 TTSGSTAYSLAAGGSMVHPQVPG 479 (579)
Q Consensus 457 TPTGSTAYsLSAGGPIV~P~v~a 479 (579)
=+|||+||-|+.|=|.+|++.+-
T Consensus 113 gv~GS~g~qlaTGl~~l~~~SDL 135 (207)
T PRK01293 113 GVTGSAGFELATGIPVLHADSDL 135 (207)
T ss_pred eeehhHHHHHhhCCccccCCCCc
Confidence 38999999999999999998764
No 293
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=20.05 E-value=1.7e+02 Score=33.64 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=21.4
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhh
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL 308 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~ 308 (579)
+++|-.. +++.+.++++++. + .|++++-...+++.|.
T Consensus 2 raLISVs-DK~~iv~lAk~L~----~-lGfeIiATgGTak~L~ 38 (511)
T TIGR00355 2 RALLSVS-DKTGIVEFAQGLV----E-RGVELLSTGGTAKLLA 38 (511)
T ss_pred EEEEEEe-CcccHHHHHHHHH----H-CCCEEEEechHHHHHH
Confidence 4555444 3666666555544 3 4777776666665543
Done!