Query 008048
Match_columns 579
No_of_seqs 250 out of 1548
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 16:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfn_A NAD kinase; structural 100.0 3.7E-76 1.3E-80 617.7 26.8 308 256-564 30-361 (365)
2 3afo_A NADH kinase POS5; alpha 100.0 3E-69 1E-73 569.5 31.8 316 249-571 26-381 (388)
3 1z0s_A Probable inorganic poly 100.0 4.9E-65 1.7E-69 516.9 22.0 247 266-565 31-277 (278)
4 1u0t_A Inorganic polyphosphate 100.0 1.3E-61 4.6E-66 494.0 27.9 291 263-565 3-300 (307)
5 2an1_A Putative kinase; struct 100.0 9.8E-61 3.4E-65 480.9 28.1 286 264-567 5-290 (292)
6 2i2c_A Probable inorganic poly 100.0 2E-58 6.9E-63 463.4 30.6 260 266-569 2-268 (272)
7 1yt5_A Inorganic polyphosphate 100.0 6.8E-58 2.3E-62 456.3 23.0 255 266-568 2-257 (258)
8 2qv7_A Diacylglycerol kinase D 99.9 1.1E-23 3.9E-28 215.8 11.5 251 264-546 24-315 (337)
9 2bon_A Lipid kinase; DAG kinas 99.8 7.8E-21 2.7E-25 194.8 4.8 257 264-556 29-324 (332)
10 3s40_A Diacylglycerol kinase; 98.9 1.5E-07 5.2E-12 95.2 22.2 117 261-392 5-127 (304)
11 3l7n_A Putative uncharacterize 86.8 0.49 1.7E-05 45.8 4.2 78 266-366 2-94 (236)
12 4a3s_A 6-phosphofructokinase; 86.8 0.32 1.1E-05 50.2 3.0 119 264-386 1-154 (319)
13 1zxx_A 6-phosphofructokinase; 84.9 0.52 1.8E-05 48.8 3.4 119 264-386 1-154 (319)
14 1pfk_A Phosphofructokinase; tr 84.7 0.53 1.8E-05 48.7 3.4 119 264-386 2-155 (320)
15 3hno_A Pyrophosphate-dependent 83.9 0.56 1.9E-05 50.2 3.3 43 331-373 103-160 (419)
16 2hig_A 6-phospho-1-fructokinas 79.8 1 3.4E-05 49.2 3.4 134 251-386 84-256 (487)
17 1o2d_A Alcohol dehydrogenase, 79.0 5.5 0.00019 41.1 8.6 88 265-364 41-148 (371)
18 1vlj_A NADH-dependent butanol 78.8 4.2 0.00014 42.5 7.8 87 264-364 43-151 (407)
19 2f48_A Diphosphate--fructose-6 77.9 1 3.4E-05 49.9 2.8 122 261-385 69-234 (555)
20 3hdv_A Response regulator; PSI 77.1 29 0.001 28.5 11.6 106 263-391 6-130 (136)
21 3fij_A LIN1909 protein; 11172J 76.5 2.1 7.2E-05 41.9 4.4 82 266-366 6-118 (254)
22 3uhj_A Probable glycerol dehyd 74.7 4.1 0.00014 42.7 6.2 85 265-364 53-138 (387)
23 3bfj_A 1,3-propanediol oxidore 72.8 6.1 0.00021 40.9 7.0 89 264-364 33-142 (387)
24 3o8l_A 6-phosphofructokinase, 71.9 2.6 9.1E-05 48.3 4.3 128 261-391 12-198 (762)
25 2o6l_A UDP-glucuronosyltransfe 70.3 5.3 0.00018 35.3 5.1 54 331-388 85-154 (170)
26 3hl0_A Maleylacetate reductase 70.0 5 0.00017 41.4 5.5 86 264-365 34-120 (353)
27 3jzd_A Iron-containing alcohol 69.7 5.8 0.0002 41.1 5.9 85 264-364 36-121 (358)
28 3m3p_A Glutamine amido transfe 69.5 2.4 8E-05 42.0 2.8 80 264-366 3-92 (250)
29 3ox4_A Alcohol dehydrogenase 2 69.3 5.4 0.00019 41.5 5.7 87 264-364 31-138 (383)
30 3o8l_A 6-phosphofructokinase, 68.9 2.3 8E-05 48.7 3.0 123 262-387 398-558 (762)
31 3o8o_B 6-phosphofructokinase s 66.9 2.4 8.1E-05 48.7 2.5 120 264-386 393-552 (766)
32 3opy_B 6-phosphofructo-1-kinas 66.9 2.7 9.1E-05 49.3 2.9 121 263-386 570-730 (941)
33 1oj7_A Hypothetical oxidoreduc 66.8 8.5 0.00029 40.2 6.6 86 265-364 51-159 (408)
34 3gt7_A Sensor protein; structu 66.3 59 0.002 27.7 10.9 105 262-390 5-129 (154)
35 3o8o_A 6-phosphofructokinase s 66.1 2.6 8.8E-05 48.6 2.6 122 262-386 391-551 (787)
36 3opy_B 6-phosphofructo-1-kinas 66.0 3.2 0.00011 48.6 3.4 126 262-390 179-364 (941)
37 3okf_A 3-dehydroquinate syntha 65.9 31 0.0011 36.4 10.6 92 263-364 61-157 (390)
38 1rrm_A Lactaldehyde reductase; 65.9 17 0.00059 37.4 8.6 86 264-364 31-140 (386)
39 3opy_A 6-phosphofructo-1-kinas 65.6 2.9 9.7E-05 49.2 2.9 121 263-386 597-756 (989)
40 3otg_A CALG1; calicheamicin, T 64.5 20 0.00069 35.6 8.6 115 265-388 243-376 (412)
41 3lua_A Response regulator rece 63.7 61 0.0021 26.7 10.6 104 264-391 4-130 (140)
42 1ta9_A Glycerol dehydrogenase; 63.6 12 0.00041 40.0 7.1 85 265-364 92-177 (450)
43 1i1q_B Anthranilate synthase c 63.1 8.8 0.0003 35.5 5.2 77 266-366 2-86 (192)
44 3cz5_A Two-component response 63.0 68 0.0023 27.0 11.1 61 331-392 50-129 (153)
45 3o8o_A 6-phosphofructokinase s 62.1 5 0.00017 46.2 3.9 121 263-386 4-183 (787)
46 2pln_A HP1043, response regula 61.6 66 0.0023 26.4 10.2 103 259-388 13-133 (137)
47 2ywj_A Glutamine amidotransfer 61.4 18 0.0006 33.0 6.9 36 331-366 36-78 (186)
48 2gru_A 2-deoxy-scyllo-inosose 61.1 19 0.00064 37.2 7.8 91 264-364 34-128 (368)
49 3ce9_A Glycerol dehydrogenase; 61.0 18 0.00061 36.8 7.5 85 264-364 34-120 (354)
50 1qdl_B Protein (anthranilate s 60.3 16 0.00056 33.8 6.5 76 266-366 3-87 (195)
51 3opy_A 6-phosphofructo-1-kinas 59.2 5.1 0.00017 47.2 3.4 126 262-390 208-392 (989)
52 3o8o_B 6-phosphofructokinase s 58.0 5.6 0.00019 45.7 3.4 121 263-386 2-182 (766)
53 3lkv_A Uncharacterized conserv 57.8 30 0.001 33.8 8.3 112 261-389 137-261 (302)
54 3ia7_A CALG4; glycosysltransfe 57.4 30 0.001 34.0 8.3 57 328-388 293-366 (402)
55 2nv0_A Glutamine amidotransfer 57.4 17 0.00058 33.4 6.1 36 331-366 37-82 (196)
56 2w7t_A CTP synthetase, putativ 57.3 7.8 0.00027 38.4 4.0 90 265-366 9-106 (273)
57 4dad_A Putative pilus assembly 56.9 47 0.0016 27.7 8.4 106 261-389 17-142 (146)
58 3h5i_A Response regulator/sens 56.7 84 0.0029 26.0 10.9 97 264-387 5-123 (140)
59 3l49_A ABC sugar (ribose) tran 56.5 83 0.0028 29.4 10.9 112 262-387 3-120 (291)
60 3snk_A Response regulator CHEY 56.4 82 0.0028 25.8 10.0 100 264-388 14-133 (135)
61 3lft_A Uncharacterized protein 56.1 78 0.0027 30.2 10.8 110 263-389 132-254 (295)
62 3qbe_A 3-dehydroquinate syntha 56.0 41 0.0014 35.1 9.3 88 265-364 44-137 (368)
63 3eul_A Possible nitrate/nitrit 55.2 87 0.003 26.3 9.9 61 332-393 61-140 (152)
64 1xah_A Sadhqs, 3-dehydroquinat 54.3 12 0.00039 38.4 4.8 89 265-364 32-124 (354)
65 1tvm_A PTS system, galactitol- 53.4 27 0.00093 30.1 6.4 94 261-387 18-112 (113)
66 1wl8_A GMP synthase [glutamine 52.7 35 0.0012 31.2 7.4 75 267-366 3-82 (189)
67 1jq5_A Glycerol dehydrogenase; 52.5 14 0.00047 37.9 5.0 86 265-364 32-118 (370)
68 2iss_D Glutamine amidotransfer 52.5 14 0.00049 34.5 4.8 35 332-366 57-101 (208)
69 4e7p_A Response regulator; DNA 51.4 1.1E+02 0.0037 25.7 12.0 60 331-391 65-143 (150)
70 1ka9_H Imidazole glycerol phos 50.8 18 0.00063 33.5 5.2 36 331-366 39-85 (200)
71 1o1y_A Conserved hypothetical 50.5 5.2 0.00018 38.7 1.4 79 265-366 13-103 (239)
72 1ujn_A Dehydroquinate synthase 50.5 40 0.0014 34.5 8.1 87 264-364 28-118 (348)
73 4fzr_A SSFS6; structural genom 50.4 13 0.00046 37.0 4.5 59 326-388 294-368 (398)
74 2p6p_A Glycosyl transferase; X 50.4 12 0.00041 37.2 4.1 57 328-388 275-347 (384)
75 3f5d_A Protein YDEA; unknow pr 50.0 7.1 0.00024 37.0 2.3 95 264-366 3-103 (206)
76 3ewn_A THIJ/PFPI family protei 49.7 18 0.00061 35.6 5.1 96 264-366 23-127 (253)
77 3nva_A CTP synthase; rossman f 49.4 18 0.0006 40.0 5.5 37 330-366 348-389 (535)
78 2qr3_A Two-component system re 48.3 1.1E+02 0.0038 24.9 10.2 102 264-390 3-128 (140)
79 3eod_A Protein HNR; response r 48.2 1.1E+02 0.0037 24.7 12.2 101 264-389 7-127 (130)
80 3klo_A Transcriptional regulat 48.1 71 0.0024 29.2 8.7 60 332-391 54-132 (225)
81 3jte_A Response regulator rece 47.9 1.2E+02 0.0039 25.0 11.1 58 331-389 48-124 (143)
82 3hbm_A UDP-sugar hydrolase; PS 47.1 22 0.00077 35.5 5.5 33 326-363 219-251 (282)
83 1a9x_B Carbamoyl phosphate syn 46.9 27 0.00094 36.7 6.3 75 265-366 191-271 (379)
84 2qh8_A Uncharacterized protein 46.5 50 0.0017 31.8 7.7 110 263-389 139-261 (302)
85 3kto_A Response regulator rece 46.0 1.2E+02 0.0042 24.8 9.5 102 264-390 6-128 (136)
86 3rsc_A CALG2; TDP, enediyne, s 45.7 40 0.0014 33.7 7.1 57 328-388 309-381 (415)
87 3tsa_A SPNG, NDP-rhamnosyltran 45.2 21 0.00072 35.4 4.9 57 328-388 282-356 (391)
88 1l9x_A Gamma-glutamyl hydrolas 44.4 10 0.00035 38.4 2.5 83 266-366 32-134 (315)
89 3cg0_A Response regulator rece 43.8 1E+02 0.0035 25.1 8.3 56 332-389 54-129 (140)
90 4e08_A DJ-1 beta; flavodoxin-l 43.7 44 0.0015 30.5 6.6 96 264-367 5-111 (190)
91 4hcj_A THIJ/PFPI domain protei 42.6 13 0.00043 34.7 2.6 101 258-366 2-111 (177)
92 3grc_A Sensor protein, kinase; 42.5 1.4E+02 0.0047 24.4 9.6 103 264-390 6-129 (140)
93 2yjn_A ERYCIII, glycosyltransf 41.6 17 0.00058 37.2 3.7 57 328-388 331-403 (441)
94 3h1g_A Chemotaxis protein CHEY 40.8 63 0.0021 26.4 6.5 57 332-388 51-127 (129)
95 1sg6_A Pentafunctional AROM po 40.7 51 0.0018 34.2 7.2 30 334-364 107-139 (393)
96 4evq_A Putative ABC transporte 39.6 93 0.0032 30.2 8.5 86 263-363 150-239 (375)
97 2ab0_A YAJL; DJ-1/THIJ superfa 38.2 45 0.0015 31.0 5.8 101 264-372 2-115 (205)
98 3jy6_A Transcriptional regulat 38.2 1.9E+02 0.0067 26.8 10.3 111 262-388 5-121 (276)
99 3t6k_A Response regulator rece 37.9 1.7E+02 0.0058 24.1 10.8 59 331-389 47-125 (136)
100 2g49_C Glucagon preproprotein; 36.5 12 0.0004 26.0 1.0 24 23-46 1-24 (29)
101 3l6u_A ABC-type sugar transpor 35.9 96 0.0033 29.0 7.7 111 263-387 7-125 (293)
102 3czc_A RMPB; alpha/beta sandwi 35.8 91 0.0031 26.5 6.9 90 264-386 18-109 (110)
103 3r75_A Anthranilate/para-amino 35.3 28 0.00097 39.0 4.4 74 265-366 447-531 (645)
104 3okp_A GDP-mannose-dependent a 35.0 1.7E+02 0.0057 28.3 9.5 123 261-388 195-344 (394)
105 3c97_A Signal transduction his 34.9 64 0.0022 26.7 5.7 61 331-391 53-133 (140)
106 3lte_A Response regulator; str 34.7 1.8E+02 0.0061 23.4 11.2 105 263-391 5-128 (132)
107 3q9s_A DNA-binding response re 34.6 2.6E+02 0.0088 26.1 10.5 58 331-390 80-156 (249)
108 2x7x_A Sensor protein; transfe 34.5 1.2E+02 0.0041 29.3 8.4 111 264-387 6-123 (325)
109 2jjm_A Glycosyl transferase, g 34.4 1.2E+02 0.004 29.9 8.4 118 264-388 211-350 (394)
110 3gl9_A Response regulator; bet 34.4 1.8E+02 0.0062 23.4 11.8 57 331-387 45-121 (122)
111 3kht_A Response regulator; PSI 34.4 1.9E+02 0.0066 23.7 10.1 57 331-387 50-127 (144)
112 2iyf_A OLED, oleandomycin glyc 34.3 31 0.0011 34.7 4.2 57 328-388 295-367 (430)
113 2iya_A OLEI, oleandomycin glyc 34.1 31 0.0011 34.8 4.2 57 328-388 317-389 (424)
114 1q7r_A Predicted amidotransfer 34.0 18 0.00063 34.1 2.3 36 331-366 59-104 (219)
115 3f6c_A Positive transcription 33.9 66 0.0022 26.2 5.5 59 332-391 46-123 (134)
116 3td9_A Branched chain amino ac 33.6 97 0.0033 30.1 7.6 85 263-362 148-236 (366)
117 3iv7_A Alcohol dehydrogenase I 33.6 20 0.00068 37.2 2.7 33 331-364 87-120 (364)
118 1y81_A Conserved hypothetical 33.1 1.3E+02 0.0046 26.5 7.7 90 264-366 14-103 (138)
119 1vco_A CTP synthetase; tetrame 33.0 53 0.0018 36.3 6.1 38 329-366 352-394 (550)
120 3dnf_A ISPH, LYTB, 4-hydroxy-3 33.0 69 0.0024 32.8 6.5 69 263-347 155-228 (297)
121 2f9f_A First mannosyl transfer 33.0 89 0.003 27.5 6.6 61 324-388 89-162 (177)
122 3k4h_A Putative transcriptiona 32.9 1.3E+02 0.0046 28.0 8.2 110 263-387 7-128 (292)
123 3b2n_A Uncharacterized protein 32.6 80 0.0027 25.9 5.9 59 332-391 49-126 (133)
124 3m6m_D Sensory/regulatory prot 32.5 2.2E+02 0.0074 23.7 9.8 58 331-388 57-136 (143)
125 2qsj_A DNA-binding response re 32.4 80 0.0027 26.5 6.0 62 331-393 49-129 (154)
126 3hv2_A Response regulator/HD d 32.2 2.2E+02 0.0075 23.8 8.8 100 264-388 14-133 (153)
127 1rrv_A Glycosyltransferase GTF 32.1 38 0.0013 34.2 4.5 101 277-388 251-369 (416)
128 2qh8_A Uncharacterized protein 31.7 2.2E+02 0.0074 27.2 9.6 84 263-363 7-97 (302)
129 3m9w_A D-xylose-binding peripl 31.7 1.3E+02 0.0043 28.7 7.9 109 264-386 2-118 (313)
130 3er6_A Putative transcriptiona 31.6 40 0.0014 31.6 4.3 36 331-366 73-118 (209)
131 3ff4_A Uncharacterized protein 31.4 20 0.00068 31.7 1.9 89 262-365 2-91 (122)
132 3luf_A Two-component system re 31.3 3.2E+02 0.011 25.8 10.7 56 332-387 169-244 (259)
133 3cg4_A Response regulator rece 31.1 2.1E+02 0.0073 23.2 9.4 101 263-387 6-126 (142)
134 3brs_A Periplasmic binding pro 30.9 1.2E+02 0.0042 28.2 7.5 112 263-387 4-126 (289)
135 3hut_A Putative branched-chain 30.6 1.3E+02 0.0046 28.9 8.0 85 263-363 138-227 (358)
136 3to5_A CHEY homolog; alpha(5)b 30.5 75 0.0026 27.9 5.6 56 332-387 57-132 (134)
137 2qv0_A Protein MRKE; structura 30.4 2.2E+02 0.0076 23.2 10.0 55 332-387 55-126 (143)
138 1oi4_A Hypothetical protein YH 30.4 25 0.00086 32.4 2.6 98 262-366 21-128 (193)
139 1jrj_A Exendin-4; Trp-CAGE, GL 30.3 14 0.00049 27.2 0.7 24 23-46 1-24 (39)
140 4ehi_A Bifunctional purine bio 30.1 53 0.0018 36.3 5.3 45 258-308 18-62 (534)
141 2iks_A DNA-binding transcripti 29.8 2.1E+02 0.0071 26.8 9.0 111 263-387 19-135 (293)
142 3rf7_A Iron-containing alcohol 29.5 41 0.0014 35.0 4.3 32 332-364 109-159 (375)
143 3beo_A UDP-N-acetylglucosamine 29.3 2.1E+02 0.0073 27.5 9.2 57 325-388 275-342 (375)
144 1qkk_A DCTD, C4-dicarboxylate 29.1 2.5E+02 0.0086 23.4 11.2 99 264-388 3-121 (155)
145 2a9v_A GMP synthase; structura 29.0 21 0.00072 33.7 1.8 35 332-366 54-95 (212)
146 4e5v_A Putative THUA-like prot 29.0 56 0.0019 32.7 5.0 92 263-369 3-99 (281)
147 3ttv_A Catalase HPII; heme ori 28.9 74 0.0025 36.6 6.4 96 260-365 596-701 (753)
148 1vhq_A Enhancing lycopene bios 28.7 26 0.00088 33.4 2.3 37 331-367 89-144 (232)
149 3ehd_A Uncharacterized conserv 28.4 1.6E+02 0.0054 27.4 7.6 95 264-364 4-105 (162)
150 3h4t_A Glycosyltransferase GTF 28.3 56 0.0019 33.1 4.9 57 327-387 279-351 (404)
151 1iir_A Glycosyltransferase GTF 28.3 60 0.0021 32.8 5.2 55 329-388 298-368 (415)
152 3g1w_A Sugar ABC transporter; 28.2 1E+02 0.0034 29.2 6.4 90 263-366 3-96 (305)
153 3gbv_A Putative LACI-family tr 28.1 1E+02 0.0035 28.8 6.4 94 263-366 7-104 (304)
154 2fvy_A D-galactose-binding per 28.1 2.3E+02 0.0077 26.6 8.9 87 265-365 3-93 (309)
155 2d59_A Hypothetical protein PH 27.6 1.5E+02 0.0051 26.2 7.1 89 264-366 22-111 (144)
156 3egc_A Putative ribose operon 27.3 2.4E+02 0.0081 26.3 8.9 109 264-387 8-122 (291)
157 3n53_A Response regulator rece 26.9 76 0.0026 26.1 4.8 58 332-389 46-123 (140)
158 1kq3_A Glycerol dehydrogenase; 26.8 36 0.0012 34.9 3.2 32 332-364 94-126 (376)
159 2fn9_A Ribose ABC transporter, 26.7 1.8E+02 0.0062 27.1 7.9 87 265-365 3-92 (290)
160 3f6p_A Transcriptional regulat 26.6 2.4E+02 0.0084 22.4 10.5 55 331-387 45-118 (120)
161 2r25_B Osmosensing histidine p 26.3 1.1E+02 0.0036 25.3 5.6 57 331-387 51-126 (133)
162 3k9c_A Transcriptional regulat 26.3 2.3E+02 0.0079 26.6 8.7 107 264-387 12-123 (289)
163 1wq6_A AML1-ETO; NHR2, oncopro 25.9 83 0.0028 25.9 4.4 31 63-93 33-66 (72)
164 2lpm_A Two-component response 25.8 17 0.00058 31.9 0.4 54 331-386 52-120 (123)
165 3hdg_A Uncharacterized protein 25.8 92 0.0032 25.4 5.1 57 332-389 51-126 (137)
166 3zzm_A Bifunctional purine bio 25.8 75 0.0026 35.0 5.5 49 339-401 132-180 (523)
167 3c3k_A Alanine racemase; struc 25.6 3.2E+02 0.011 25.5 9.5 85 263-365 7-95 (285)
168 2qxy_A Response regulator; reg 25.5 2.7E+02 0.0093 22.6 10.4 102 264-390 4-123 (142)
169 3ol1_A Vimentin; structural ge 25.4 1E+02 0.0035 27.2 5.4 29 80-108 45-73 (119)
170 3clk_A Transcription regulator 25.3 2.1E+02 0.0071 26.8 8.1 109 264-387 8-122 (290)
171 3h75_A Periplasmic sugar-bindi 24.4 2.7E+02 0.0091 27.0 8.9 89 264-366 3-96 (350)
172 2rjo_A Twin-arginine transloca 24.3 1.3E+02 0.0043 29.1 6.5 90 262-365 3-97 (332)
173 3d54_D Phosphoribosylformylgly 24.1 14 0.00048 34.2 -0.4 74 264-366 2-89 (213)
174 3r0j_A Possible two component 24.0 4.2E+02 0.014 24.3 10.2 101 263-388 22-141 (250)
175 1gea_A Pituitary adenylate cyc 23.9 14 0.00047 25.1 -0.4 25 23-47 1-25 (26)
176 3dbi_A Sugar-binding transcrip 23.8 2.4E+02 0.0084 27.1 8.5 111 263-387 60-178 (338)
177 3tb6_A Arabinose metabolism tr 23.7 2.1E+02 0.0073 26.5 7.8 109 265-387 16-134 (298)
178 2hqr_A Putative transcriptiona 23.7 1.2E+02 0.0042 27.3 5.9 57 331-389 43-116 (223)
179 1dz3_A Stage 0 sporulation pro 23.6 1.6E+02 0.0053 23.8 6.0 58 332-389 48-124 (130)
180 2ywd_A Glutamine amidotransfer 23.5 23 0.00079 32.2 0.9 36 331-366 38-84 (191)
181 1srr_A SPO0F, sporulation resp 23.1 1.6E+02 0.0053 23.5 5.9 57 332-389 47-122 (124)
182 1u9c_A APC35852; structural ge 23.1 41 0.0014 31.5 2.6 37 331-367 88-133 (224)
183 1dbw_A Transcriptional regulat 22.9 2.9E+02 0.0099 22.0 13.1 59 332-391 47-124 (126)
184 3brq_A HTH-type transcriptiona 22.9 2.6E+02 0.0089 25.9 8.2 86 263-365 18-110 (296)
185 2rk3_A Protein DJ-1; parkinson 22.8 48 0.0016 30.4 2.9 95 264-366 3-109 (197)
186 1gpw_B Amidotransferase HISH; 22.8 23 0.0008 32.6 0.8 36 331-366 41-87 (201)
187 3l18_A Intracellular protease 22.7 43 0.0015 29.7 2.6 95 264-366 2-105 (168)
188 2lqo_A Putative glutaredoxin R 22.6 2.8E+02 0.0096 22.8 7.4 30 355-386 54-83 (92)
189 2xw6_A MGS, methylglyoxal synt 22.6 3E+02 0.01 24.8 8.1 93 263-360 2-109 (134)
190 3lkb_A Probable branched-chain 22.4 1.4E+02 0.0047 29.4 6.4 86 263-363 142-231 (392)
191 4eyg_A Twin-arginine transloca 22.4 1.8E+02 0.0061 28.1 7.1 87 263-363 138-230 (368)
192 1mb3_A Cell division response 22.1 2.6E+02 0.009 21.9 7.1 58 332-389 45-122 (124)
193 3gv0_A Transcriptional regulat 22.0 2.1E+02 0.0073 26.7 7.5 109 263-387 7-124 (288)
194 2b4n_A Gastric inhibitory poly 21.8 52 0.0018 24.6 2.3 24 23-46 1-24 (42)
195 2l63_A GLP-2, glucagon-like pe 21.7 25 0.00084 25.1 0.5 24 23-46 1-24 (33)
196 3szu_A ISPH, 4-hydroxy-3-methy 21.5 49 0.0017 34.4 3.0 113 264-393 170-303 (328)
197 3nhm_A Response regulator; pro 21.5 1.4E+02 0.0049 24.0 5.4 59 331-389 46-123 (133)
198 3h5l_A Putative branched-chain 21.3 2.9E+02 0.01 27.4 8.7 87 260-361 160-251 (419)
199 3uug_A Multiple sugar-binding 21.1 2.5E+02 0.0086 26.6 7.8 89 264-366 3-94 (330)
200 3d02_A Putative LACI-type tran 20.9 2.3E+02 0.0079 26.5 7.4 88 264-365 4-95 (303)
201 3ilh_A Two component response 20.8 3.3E+02 0.011 21.9 10.4 60 331-390 59-141 (146)
202 3bbl_A Regulatory protein of L 20.8 1.8E+02 0.0062 27.3 6.6 85 264-365 4-96 (287)
203 3i42_A Response regulator rece 20.7 3.2E+02 0.011 21.7 9.4 101 264-388 3-122 (127)
204 2d2p_A Pituitary adenylate cyc 20.7 23 0.00079 26.0 0.2 24 23-46 1-24 (39)
205 3o74_A Fructose transport syst 20.6 1.7E+02 0.0059 26.8 6.3 111 264-388 2-118 (272)
206 8abp_A L-arabinose-binding pro 20.4 2.6E+02 0.0089 26.1 7.7 87 264-365 2-91 (306)
207 3hcw_A Maltose operon transcri 20.3 2.3E+02 0.0078 26.7 7.3 110 263-387 6-128 (295)
208 2iuf_A Catalase; oxidoreductas 20.2 1.5E+02 0.0051 33.8 6.7 92 259-365 524-641 (688)
209 2bfw_A GLGA glycogen synthase; 20.0 1.9E+02 0.0065 25.2 6.2 60 324-387 107-179 (200)
No 1
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-76 Score=617.70 Aligned_cols=308 Identities=39% Similarity=0.750 Sum_probs=267.5
Q ss_pred EeeecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhh-cCCccccc--ccccchHHHhhhCCC
Q 008048 256 ISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT-ESSYFSFV--QTWKDEKEILLLHTK 332 (579)
Q Consensus 256 ~~l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~-~~~~~~~i--~~~~~~~~~~~l~~~ 332 (579)
.+|+|.++|++|+||+|++++++.+.++++++||.+ .+++|++|+.++..+.. ....+... ..+.......++..+
T Consensus 30 ~~l~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~-~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (365)
T 3pfn_A 30 QRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLME-ENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQ 108 (365)
T ss_dssp CBEEESSCCCEEEEEECTTCGGGHHHHHHHHHHHHH-TSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTT
T ss_pred cccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEehHHhhhhccccccccccccccccccccChhhcccC
Confidence 569999999999999999999999999999999997 58999999998875421 11111100 000000112345678
Q ss_pred ccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccc---
Q 008048 333 VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKN--- 409 (579)
Q Consensus 333 ~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~--- 409 (579)
+|+||+||||||||+|||++.+.++||+|||+|+|||||++++++++++|+++++|+|.+++|+||+|++.+.....
T Consensus 109 ~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~vl~g~~~v~~R~~L~~~v~~~~~~~~~~ 188 (365)
T 3pfn_A 109 IDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTA 188 (365)
T ss_dssp CSEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHHHHHSCCBEEEECCEEEEEEC--------
T ss_pred CCEEEEEcChHHHHHHHHHhccCCCCEEEEcCCCCccceeecHHHHHHHHHHHHcCCCeEEEEeeEEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997631000
Q ss_pred ------------------cccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCC
Q 008048 410 ------------------EIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGS 471 (579)
Q Consensus 410 ------------------~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGP 471 (579)
.......++|||||+|.|+..++|+++++|+||+++++|+||||||||||||||||||||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ALNEvvI~r~~~~~m~~~~v~idg~~~~~~~aDGlIVSTPTGSTAYslSAGGP 268 (365)
T 3pfn_A 189 VHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGAS 268 (365)
T ss_dssp ---------------------CEEEEEESSEEEEECTTCSSCCCEEEEETTEEEEEECSSEEEEECGGGGGTHHHHTTCC
T ss_pred ccccccccccccccccccCCceeeccCccceEEEecCCCCcEEEEEEEECCEEEEEEecCeEEEeCCccHHHHHHhCCCC
Confidence 00011357899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCC
Q 008048 472 MVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDST 551 (579)
Q Consensus 472 IV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~ 551 (579)
|+||++++|++||||||+|++||+|+|++++|+|++..+++..+++++||+...+|.+||+|.|++|++++++|++++.+
T Consensus 269 Iv~P~~~~i~ltPI~PhsLs~RPiVlp~~~~I~i~v~~~~~~~~~vs~DG~~~~~l~~gd~V~I~~s~~~~~li~~~~~~ 348 (365)
T 3pfn_A 269 MIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPV 348 (365)
T ss_dssp EECTTSCCEEEEEESCSSTTCCCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCEEEEEECSSCEEEECSSCHH
T ss_pred ccCCCCCeEEEEeccCCccCCCceEECCCCEEEEEEccCCCCcEEEEEcCCeeeecCCCCEEEEEECCCceEEEEeCCCC
Confidence 99999999999999999999999999999999999976666679999999999999999999999999999999888888
Q ss_pred CChHHHHHhhhCC
Q 008048 552 DDFFRSIHDGLHW 564 (579)
Q Consensus 552 ~dff~~LReKL~W 564 (579)
+|||++|+.+||-
T Consensus 349 ~d~f~~l~~~~~~ 361 (365)
T 3pfn_A 349 SDWFESLAQCLHH 361 (365)
T ss_dssp HHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999985
No 2
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-69 Score=569.55 Aligned_cols=316 Identities=35% Similarity=0.572 Sum_probs=261.8
Q ss_pred eccCcceEeeecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcc-------cccccc
Q 008048 249 AERSSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYF-------SFVQTW 320 (579)
Q Consensus 249 ~~~s~k~~~l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~-------~~i~~~ 320 (579)
.++++++..+.|..+|++|+||+|+.++++.+.+.++++||.++ .+++|++++..+..+....... ......
T Consensus 26 ~~~~~~~~~~~w~~~~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~ 105 (388)
T 3afo_A 26 SPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYT 105 (388)
T ss_dssp C----CCEEEECSSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEE
T ss_pred eCcchhheeeEccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccc
Confidence 35667888999999999999999999999999999999999864 3899999988776543211000 000001
Q ss_pred cchHHHhhhCCCccEEEEEeCchHHHHHHHhcCCCCC-cEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEE
Q 008048 321 KDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVP-PIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQ 399 (579)
Q Consensus 321 ~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~-PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~ 399 (579)
... .....++|+||+||||||||+|++.+.+.++ ||+|||+|+||||+++++++++++|+++++|+|.+++|+||+
T Consensus 106 ~~~---~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G~lGFLt~~~~~~~~~al~~il~g~~~~~~r~~L~ 182 (388)
T 3afo_A 106 GPE---QDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVISSRAKCLHRTRLE 182 (388)
T ss_dssp CCH---HHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECSSCCSSCCEEGGGHHHHHHHHHTTCCEEEEECCEE
T ss_pred cch---hhcccCCCEEEEEeCcHHHHHHHHHhcccCCCeEEEEECCCcccCCcCChHHHHHHHHHHhcCCceEEEeeEEE
Confidence 111 1223568999999999999999999987776 899999999999999999999999999999999999999999
Q ss_pred EEEeeccccccccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCe
Q 008048 400 CHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPG 479 (579)
Q Consensus 400 v~V~r~~~~~~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~a 479 (579)
|++.++++.. ....+|||||+|.++..++|+.++++|||+++++|+||||||||||||||||||||||||||.+++
T Consensus 183 ~~v~~~~~~~----~~~~~ALNev~i~~~~~~~~~~~~v~id~~~~~~~~~DGliVsTPTGSTAYslSAGGpIv~P~~~~ 258 (388)
T 3afo_A 183 CHLKKKDSNS----SIVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVSPLVPA 258 (388)
T ss_dssp EEEECTTCCC----CEEEEESSEEEEECTTCSSCEEEEEEETTEEEEEEEEEEEEEECTGGGGTHHHHTTCCEECTTSCE
T ss_pred EEEEeCCccc----hhhheeeceEEEecCCCCcEEEEEEEECCEEEEeecCCeEEEeCCCcHHHHHHhccCCcccCCCCc
Confidence 9998754210 134689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCeeeCCCCEEEEEeecCC-----CCCEEEEEeCCcccccCCCCEEEEEecCCceee----------
Q 008048 480 ILFTPICPHSLSFRPLILPEHVTLRVQIPFNS-----RSPAWASFDGKDRKQLAPGDALVCSMAPWPVPT---------- 544 (579)
Q Consensus 480 iviTPIcPHsLs~RPlVlp~~~~I~I~v~~~s-----r~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~l---------- 544 (579)
|++||||||+|++||+|+|++++|+|++.... +..+++++||+...+|.+||+|.|++++.++.+
T Consensus 259 ~~ltPI~Ph~l~~RpiVl~~~~~i~i~v~~~~~~~~~~~~~~l~~DG~~~~~l~~gd~v~v~~s~~~~~~~~~~~p~~~~ 338 (388)
T 3afo_A 259 ILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVINEVGTIYIDGTQLPTTRK 338 (388)
T ss_dssp EEEEEEEESCSCCCCEEEETTCCEEEEECCCSSCSCSSSCEEEEETTEEEEEECTTCEEEEEESSCCCCCTTC-------
T ss_pred eEEeeecCCcccCCCeEECCCCEEEEEEccccccccccccEEEEEcCCcceecCCCCEEEEEECCceeeecccccccccc
Confidence 99999999999999999999999999986432 246899999999999999999999999876622
Q ss_pred --------e--------eecCCCCChHHHHHhhhCCCccCCCC
Q 008048 545 --------A--------CQVDSTDDFFRSIHDGLHWNLRKTQS 571 (579)
Q Consensus 545 --------v--------~l~~~~~dff~~LReKL~Wg~r~~Q~ 571 (579)
+ +......+|++.|+++|+||.|.+++
T Consensus 339 ~~~~~~~~i~~~~~~~~~~lr~kl~W~~~~~~~l~~n~~~~~~ 381 (388)
T 3afo_A 339 TENDFNNSKKPKRSGIYCVAKTENDWIRGINELLGFNSSFRLT 381 (388)
T ss_dssp -----------CCCSEEEECSSTTHHHHHHHHTTCTTCCCCCC
T ss_pred ccccccceeecCCCCceeecccccchhHHHHhhcCCCcccccc
Confidence 2 12223456777777888899888765
No 3
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=100.00 E-value=4.9e-65 Score=516.85 Aligned_cols=247 Identities=21% Similarity=0.386 Sum_probs=226.0
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+||+|++++ ++++.+||.+ .|+++++++..+. ...++|+||+|||||||
T Consensus 31 ki~iv~~~~~~-----~~~l~~~L~~-~g~~v~~~~~~~~-----------------------~~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 31 RAAVVYKTDGH-----VKRIEEALKR-LEVEVELFNQPSE-----------------------ELENFDFIVSVGGDGTI 81 (278)
T ss_dssp EEEEEESSSTT-----HHHHHHHHHH-TTCEEEEESSCCG-----------------------GGGGSSEEEEEECHHHH
T ss_pred EEEEEeCCcHH-----HHHHHHHHHH-CCCEEEEcccccc-----------------------ccCCCCEEEEECCCHHH
Confidence 59999999887 7889999986 6899988653221 11358999999999999
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEEe
Q 008048 346 LWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTI 425 (579)
Q Consensus 346 L~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVvI 425 (579)
|+|+|.+.+. +||+|||+|+||||+++++++++++|+++++ +|.+++|+||++ +.++ ..+|||||+|
T Consensus 82 L~aa~~~~~~-~PilGIN~G~lGFLt~~~~~~~~~~l~~l~~-~~~i~~r~~L~~-v~~~----------~~~ALNEv~I 148 (278)
T 1z0s_A 82 LRILQKLKRC-PPIFGINTGRVGLLTHASPENFEVELKKAVE-KFEVERFPRVSC-SAMP----------DVLALNEIAV 148 (278)
T ss_dssp HHHHTTCSSC-CCEEEEECSSSCTTCCBBTTBCHHHHHHHHH-HCCEEEECCEEE-TTEE----------EEEESSEEEE
T ss_pred HHHHHHhCCC-CcEEEECCCCCccccccCHHHHHHHHHHHHh-hCeEEEeEEEEE-EECC----------CcEEEEEEEE
Confidence 9999999888 9999999999999999999999999999999 999999999999 7542 1689999999
Q ss_pred ccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEEE
Q 008048 426 DRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 505 (579)
Q Consensus 426 ~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~I 505 (579)
.++..++|++++++|||+++++|+|||||||||||||||||||||||++|++++|++||||||++++||+|+|++++|+|
T Consensus 149 ~~~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAY~lSAGGpIv~P~~~~l~ltPI~P~~l~~RpiVl~~~~~i~i 228 (278)
T 1z0s_A 149 LSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEV 228 (278)
T ss_dssp EESSTTCCEEEEEEETTEEEEEEEESEEEEEESGGGGTHHHHTTCCEECTTSCCEEEEEESCCSSBCCCEEECTTSCEEE
T ss_pred ecCCCccEEEEEEEECCEEEEEEecCeEEEecCCchhHHHhhCCCceeCCCCCeEEEEEeCCCCCCCCcEEECCCCEEEE
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCC
Q 008048 506 QIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565 (579)
Q Consensus 506 ~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg 565 (579)
+ +.++.+++||+. ++.+||+|.|++++.++++ + .+++||++||+||+|.
T Consensus 229 ~-----~~~~~l~~DG~~--~l~~g~~v~I~~s~~~~~l--~--~~~~f~~~Lr~Kl~w~ 277 (278)
T 1z0s_A 229 I-----AEKAIVVADGQK--SVDFDGEITIEKSEFPAVF--F--KNEKRFRNLFGKVRSI 277 (278)
T ss_dssp E-----EEEEEEEETTTE--EEEEEEEEEEEECSCCEEE--E--CCTTHHHHHHHHHHTC
T ss_pred E-----eCcEEEEEcCCe--ecCCCcEEEEEECCCeeEe--C--CCCCHHHHHHHHhCCC
Confidence 7 235899999998 8999999999999999987 3 6799999999999995
No 4
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=100.00 E-value=1.3e-61 Score=493.97 Aligned_cols=291 Identities=22% Similarity=0.308 Sum_probs=242.3
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcC--C-ccc----ccccccchHHHhhhCCCccE
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES--S-YFS----FVQTWKDEKEILLLHTKVDL 335 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~--~-~~~----~i~~~~~~~~~~~l~~~~DL 335 (579)
+|++|+||+|+.++++.+.+.++.+||.+ .+++++++...+..+.... . .+. ....+. .......++|+
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~d~ 78 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVD---ADQHAADGCEL 78 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEEC--------------------------------------CCC
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhhcccccccccccccccccccc---cccccccCCCE
Confidence 37899999999999999999999999986 6899988766544320000 0 000 000000 00113467899
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccC
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIED 415 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~ 415 (579)
||++|||||||++++.+.+.++|++|||+|++|||+++.+++++++|+.+++|+|.++.|++|++.+.+++.. ..
T Consensus 79 vi~~GGDGT~l~a~~~~~~~~~pvlgi~~G~~gfl~~~~~~~~~~~~~~i~~g~~~~~~r~~l~~~v~~~g~~-----~~ 153 (307)
T 1u0t_A 79 VLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRI-----VN 153 (307)
T ss_dssp EEEEECHHHHHHHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHHHTCCEEEEECCEEEEEEETTEE-----EE
T ss_pred EEEEeCCHHHHHHHHHhccCCCCEEEEeCCCCccCcccCHHHHHHHHHHHHcCCcEEEEEEEEEEEEEeCccc-----ee
Confidence 9999999999999999987789999999999999999999999999999999999999999999998775421 13
Q ss_pred cceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCe
Q 008048 416 PILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPL 495 (579)
Q Consensus 416 ~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPl 495 (579)
..+||||++|.++..++++++++++||+++++|++|||||||||||||||+||||||++|+++++++||||||+++.||+
T Consensus 154 ~~~ALNev~i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~lSaGGpiv~P~~~~~~l~pi~p~~l~~rp~ 233 (307)
T 1u0t_A 154 RGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPM 233 (307)
T ss_dssp EEEESSEEEEECSSSSSCEEEEEESSSSEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEEEESCSSSCCCCE
T ss_pred ceeeeeeEEEecCCCceEEEEEEEECCEEEEEEcCCEEEEccchhhHHHHhcCCCCccCCCCCeEEEEeecCccccCCCE
Confidence 46899999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCC
Q 008048 496 ILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565 (579)
Q Consensus 496 Vlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg 565 (579)
|+|++.+|+|++... +.++.+++||+...++.+||.|.|++++++++++. ..+++||++||+||+|+
T Consensus 234 v~~~~~~i~i~v~~~-~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~--~~~~~~~~~l~~kl~~~ 300 (307)
T 1u0t_A 234 VTSPEATIAIEIEAD-GHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWAR--LDSAPFTDRLVRKFRLP 300 (307)
T ss_dssp EECTTCCEEEEECTT-SCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEE--CSCCCHHHHHHHHHTCC
T ss_pred EECCCCEEEEEEecC-CCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEE--eCCCCHHHHHHHHhCCC
Confidence 999999999988532 45689999999988999999999999999999875 47899999999999887
No 5
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=100.00 E-value=9.8e-61 Score=480.88 Aligned_cols=286 Identities=27% Similarity=0.442 Sum_probs=241.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
+++|+||+||.++.+.+.+.++.+||.+ .++++++++..+..+... .+ ..+. . +....++|+||++||||
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~--~~---~~~~-~---~~~~~~~D~vi~~GGDG 74 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVEQQIAHELQLK--NV---PTGT-L---AEIGQQADLAVVVGGDG 74 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHH-TTCEEEEEHHHHHHTTCS--SC---CEEC-H---HHHHHHCSEEEECSCHH
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcccc--cc---cccc-h---hhcccCCCEEEEEcCcH
Confidence 6899999999998888999999999986 689998877654432100 00 0010 1 11234589999999999
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeE
Q 008048 344 TVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 423 (579)
Q Consensus 344 TlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDV 423 (579)
|||++++.+.+.++|++|||+|++|||+++.+++++++++.+++|+|.++.|++|++.+.+++.. ....+||||+
T Consensus 75 T~l~a~~~~~~~~~P~lGI~~Gt~gfla~~~~~~~~~al~~i~~g~~~~~~r~~l~~~~~~~~~~-----~~~~~alnev 149 (292)
T 2an1_A 75 NMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQ-----KRISTAINEV 149 (292)
T ss_dssp HHHHHHHHHTTSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHTTCEEEEEEEEEEEEEECC---------CEEEESSEE
T ss_pred HHHHHHHHhhcCCCCEEEEECCCcccCCcCCHHHHHHHHHHHHcCCCEEEEeEEEEEEEEeCCce-----EeeeeEeeeE
Confidence 99999999988889999999999999999999999999999999999999999999998764321 2357899999
Q ss_pred EeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEE
Q 008048 424 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTL 503 (579)
Q Consensus 424 vI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I 503 (579)
+|.++..++++++++++||++++++++||+||||||||||||+|||||+++|++++++++|||||+++.||+|++++.+|
T Consensus 150 ~i~~~~~~~~~~~~v~idg~~~~~~~~dglivstptGSTay~~SaGG~iv~P~~~~~~l~pi~p~~l~~r~iv~~~~~~i 229 (292)
T 2an1_A 150 VLHPGKVAHMIEFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTI 229 (292)
T ss_dssp EEEESSTTCCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEEESCSSTTCCCEEEETTCCE
T ss_pred EEecCCCCceEEEEEEECCEEEEEEEeCEEEECCCCchHHHHHhCCCCCCCCCCCeEEEEecCcCcCCCCCEEECCCCEE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCcc
Q 008048 504 RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 567 (579)
Q Consensus 504 ~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r 567 (579)
+|++.. .+.++.+++||+...++.+|+.|.|+.++.++++++. .+++||++||+||+|+.+
T Consensus 230 ~i~~~~-~~~~~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~~--~~~~~~~~l~~kl~w~~~ 290 (292)
T 2an1_A 230 RLRFSH-RRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHP--KDYSYFNTLSTKLGWSKK 290 (292)
T ss_dssp EEEECC----CEEEEETTSCCEEECTTCEEEEEEEEEEEEEEEE--TTCCHHHHHHHHHTCBCC
T ss_pred EEEEcc-CCCceEEEECCCeEEecCCCcEEEEEECCCEEEEEEe--CCCCHHHHHHHHhccCCc
Confidence 998742 2346899999999899999999999999999998764 789999999999999965
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=100.00 E-value=2e-58 Score=463.36 Aligned_cols=260 Identities=22% Similarity=0.334 Sum_probs=228.4
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHH
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTV 345 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTl 345 (579)
+|+||+|+ ++++.+.+.++.+||.+ .++++ + ..++|+||++||||||
T Consensus 2 ki~ii~n~-~~~~~~~~~~l~~~l~~-~g~~v--~-----------------------------~~~~D~vv~lGGDGT~ 48 (272)
T 2i2c_A 2 KYMITSKG-DEKSDLLRLNMIAGFGE-YDMEY--D-----------------------------DVEPEIVISIGGDGTF 48 (272)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHTT-SSCEE--C-----------------------------SSSCSEEEEEESHHHH
T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHH-CCCEe--C-----------------------------CCCCCEEEEEcCcHHH
Confidence 68999994 67788999999999975 56664 1 1347999999999999
Q ss_pred HHHHHhcCCC--CCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeE
Q 008048 346 LWAASIFKGP--VPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEV 423 (579)
Q Consensus 346 L~AAr~~~~~--~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDV 423 (579)
|++++.+.+. ++||+|||+|++|||+++.+++++++|+.+++|+|.+++|++|++.+.+.++. .....+||||+
T Consensus 49 l~aa~~~~~~~~~~PilGIn~G~lgfl~~~~~~~~~~~l~~l~~g~~~i~~r~~L~~~v~~~~g~----~~~~~~ALNev 124 (272)
T 2i2c_A 49 LSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGK----KEATYLALNES 124 (272)
T ss_dssp HHHHHHTGGGTTTCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCEEEEEEEEEEEEEESSSC----CEEEEEESSEE
T ss_pred HHHHHHHhhcCCCCCEEEEeCCCCCcCCcCCHHHHHHHHHHHHcCCCEEEEEEEEEEEEEeCCCc----EEeHHhhhhHh
Confidence 9999999875 89999999999999999999999999999999999999999999998764221 01157899999
Q ss_pred EeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCC-CC----CeeeC
Q 008048 424 TIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS-FR----PLILP 498 (579)
Q Consensus 424 vI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs-~R----PlVlp 498 (579)
+|.+. ++++.+++++||+++++|++||+|||||||||||++|||||||+|+++++++||||||+++ +| |+|+|
T Consensus 125 ~i~~~--~~~~~~~i~idg~~~~~~~~DGlivsTptGSTaY~~SaGGpiv~P~~~~~~ltpi~p~~l~~~r~~~~p~v~~ 202 (272)
T 2i2c_A 125 TVKSS--GGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFP 202 (272)
T ss_dssp EEEES--SSCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCCCCTTSCEEEEEEESCCCSSSCCCCCSCEEEE
T ss_pred hhccc--CcEEEEEEEECCEEEEEEECCEEEEEccccHHHHHHcCCCCeeCCCCCceEEeCCCCccchhhhccCCcEEeC
Confidence 99884 5899999999999999999999999999999999999999999999999999999999998 45 99999
Q ss_pred CCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccCC
Q 008048 499 EHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRKT 569 (579)
Q Consensus 499 ~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~~ 569 (579)
++.+|+|++. .+.++.+++||+. ..+.+|+.|.|++++.+++++. ..+++||++||+||+|+..-.
T Consensus 203 ~~~~i~i~~~--~~~~~~~~~DG~~-~~~~~~~~v~i~~~~~~~~~i~--~~~~~f~~~l~~kl~~~~~~~ 268 (272)
T 2i2c_A 203 KHHVVSLQPV--NDKDFQISVDHLS-ILHRDVQEIRYEVSAKKIHFAR--FRSFPFWRRVHDSFIEDLEHH 268 (272)
T ss_dssp TTCCEEEEES--SCCCEEEEETTEE-EEECSEEEEEEEEEEEEEEEEE--CSCCCHHHHHHHHHTCC----
T ss_pred CCCEEEEEEc--CCCCEEEEECCCE-eecCCCCEEEEEEcCCEEEEEE--eCCCCHHHHHHHHhCCCcccc
Confidence 9999999874 2456899999998 6789999999999999999875 477999999999999997543
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-58 Score=456.34 Aligned_cols=255 Identities=24% Similarity=0.353 Sum_probs=222.0
Q ss_pred EEEEEEcCCChh-HHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 266 TVVILTKPNSNS-VQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 266 ~V~IV~Kp~~~~-~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
+|+||+||.... +.+++.++.++|. ++++... + .....++|+||++|||||
T Consensus 2 ki~ii~Np~~~~~~~~~~~~i~~~l~---~~~~~~~---------~----------------~~~~~~~D~vv~~GGDGT 53 (258)
T 1yt5_A 2 KIAILYREEREKEGEFLKEKISKEHE---VIEFGEA---------N----------------APGRVTADLIVVVGGDGT 53 (258)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTTTSE---EEEEEES---------S----------------SCSCBCCSEEEEEECHHH
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHhc---CCceecc---------c----------------ccccCCCCEEEEEeCcHH
Confidence 699999987655 5555566665553 3332100 0 112356899999999999
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEEEeeccccccccccCcceeeEeEE
Q 008048 345 VLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 424 (579)
Q Consensus 345 lL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~V~r~~~~~~~~~~~~~~ALNDVv 424 (579)
||++++.+.+ ++|++|||+|++|||+++.+++++++|+.+++|+|.+++|++|++.+.+. ..+||||++
T Consensus 54 ll~~a~~~~~-~~PilGIn~G~~Gfl~~~~~~~~~~al~~i~~g~~~i~~r~~l~~~~~~~----------~~~alNev~ 122 (258)
T 1yt5_A 54 VLKAAKKAAD-GTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREETRWFIQIESELG----------NHLALNDVT 122 (258)
T ss_dssp HHHHHTTBCT-TCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCEEEEEEEEEEEETTE----------EEEESSEEE
T ss_pred HHHHHHHhCC-CCCEEEEECCCCCccCcCCHHHHHHHHHHHHcCCceEEEEEEEEEEEcCC----------cceeeeEEE
Confidence 9999999988 99999999999999999999999999999999999999999999987431 468999999
Q ss_pred eccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCCCCCeEEEEEcCCCCCCCCCeeeCCCCEEE
Q 008048 425 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 504 (579)
Q Consensus 425 I~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aiviTPIcPHsLs~RPlVlp~~~~I~ 504 (579)
|.++...+++++++++||++++++++||+||||||||||||+||||||++|+++++++||||||+++.||+|+|++.+|+
T Consensus 123 i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~~SaGGpiv~P~~~~~~i~pi~p~~l~~rp~v~~~~~~i~ 202 (258)
T 1yt5_A 123 LERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVV 202 (258)
T ss_dssp EECCTTSCCEEEEEEETTSCCEEEEESEEEEECTGGGGTTTTTTTCCCCCTTCCEEEEEEESCSTTCCCCEEEETTSCEE
T ss_pred EecCCCCceEEEEEEECCEEEEEEEccEEEEEcCCCcHHHHhhCCCcccCCCCCEEEEEEeccccccCCCEEECCCCEEE
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceeeeeecCCCCChHHHHHhhhCCCccC
Q 008048 505 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLRK 568 (579)
Q Consensus 505 I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~lv~l~~~~~dff~~LReKL~Wg~r~ 568 (579)
|++. .++.+++||+....+.+ |+|+.++.++++++ +.+++||++||+||+||.+.
T Consensus 203 i~~~----~~~~~~~DG~~~~~~~~---i~i~~~~~~~~li~--~~~~~~~~~l~~kl~w~~~~ 257 (258)
T 1yt5_A 203 VESQ----RDINMLVDGVLTGKTKR---IEVKKSRRYVRILR--PPEYDYVTVIRDKLGYGRRI 257 (258)
T ss_dssp EEEE----EEEEEEETTEEEEEEEE---EEEEEEEEEEEEEE--CTTCCHHHHHHHHHCCSCC-
T ss_pred EEEC----CCEEEEECCCcceeeEE---EEEEECCCeEEEEE--cCCCCHHHHHHHHcCCCccC
Confidence 9872 35889999998776654 99999999999875 47899999999999999763
No 8
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=99.89 E-value=1.1e-23 Score=215.76 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=177.4
Q ss_pred CCEEEEEEcCCCh--hHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSN--SVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~--~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+++++||.||.+. .+.+...++.++|.+ .++++.+.......-.. .........++|+||++||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~~~~~a~-------------~~~~~~~~~~~d~vvv~GG 89 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATEKIGDAT-------------LEAERAMHENYDVLIAAGG 89 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECCSTTHHH-------------HHHHHHTTTTCSEEEEEEC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEecCcchHH-------------HHHHHHhhcCCCEEEEEcC
Confidence 5789999999775 466778999999986 57776654321110000 0001122356899999999
Q ss_pred chHHHHHHHhc--CCCCCcEEEEcCCCCccCcCC--CcchHHHHHHHHHcCCceE------EEEeeE-EEEEeeccccc-
Q 008048 342 DGTVLWAASIF--KGPVPPIVPFSLGSLGFMTPF--HSEHYKDYLDSVLRGPISI------TLRNRL-QCHVIRDAAKN- 409 (579)
Q Consensus 342 DGTlL~AAr~~--~~~~~PILGINlG~LGFLt~~--~~edi~~~L~~il~G~y~I------e~R~rL-~v~V~r~~~~~- 409 (579)
||||+.+++.+ .+..+|+.+|++|+.|||+.. -+.++.++++.+++|++.. +.|..+ .+.+.-+....
T Consensus 90 DGTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~~r~fl~~~~~G~~a~v~~ 169 (337)
T 2qv7_A 90 DGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSY 169 (337)
T ss_dssp HHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEETTEEESSEEEEECBCC---
T ss_pred chHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcCCCCCHHHHHHHHHcCCcEEEEEEEECCEEEEEEeeecccHHHHH
Confidence 99999999999 678899999999999999985 4788999999999999873 345333 34331110000
Q ss_pred ------c---ccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCC-----
Q 008048 410 ------E---IEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHP----- 475 (579)
Q Consensus 410 ------~---~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P----- 475 (579)
+ ........|||+++ ..+...+++++||+. +++||++|+|++||| ++|||++.|
T Consensus 170 ~~~~~~k~~~G~~~Y~~~~l~~l~-----~~~~~~~~i~~dg~~---~~~~~~~v~v~n~~~----~gGg~~i~P~a~~~ 237 (337)
T 2qv7_A 170 ETPSKLKSIVGPFAYYIKGFEMLP-----QMKAVDLRIEYDGNV---FQGEALLFFLGLTNS----MAGFEKLVPDAKLD 237 (337)
T ss_dssp ----------CGGGSCCCTTTTGG-----GBCCEEEEEEETTEE---EEEEEEEEEEESSCC----CSSCSCSSTTCCSS
T ss_pred HhhHHHHhccChHHHHHHHHHHHH-----hCCCccEEEEECCEE---EEeeEEEEEEECCCC----CCCCCccCCCCcCC
Confidence 0 00011223566653 135678999999986 679999999999997 899999999
Q ss_pred --CCCeEEEEEcCCCCC-CCCCeeeCCC----CEE------EEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCce
Q 008048 476 --QVPGILFTPICPHSL-SFRPLILPEH----VTL------RVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPV 542 (579)
Q Consensus 476 --~v~aiviTPIcPHsL-s~RPlVlp~~----~~I------~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v 542 (579)
.++.++++|+||+.+ ..+|.+++.. ..| +|++.. ..+..+.+||+... ++.+.|+..+..+
T Consensus 238 DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~--~~~~~~~iDGE~~~----~~~i~i~v~p~~l 311 (337)
T 2qv7_A 238 DGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISS--FTDLQLNVDGEYGG----KLPANFLNLERHI 311 (337)
T ss_dssp SSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEEC--SSCCEEEETTEEEE----ESCEEEEEEEEEE
T ss_pred CCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEE--CCCCeEEECCCcCC----CCcEEEEEEcCeE
Confidence 578999999999976 5667776632 222 233332 23578999999754 4669999999999
Q ss_pred eeee
Q 008048 543 PTAC 546 (579)
Q Consensus 543 ~lv~ 546 (579)
+++.
T Consensus 312 ~v~~ 315 (337)
T 2qv7_A 312 DVFA 315 (337)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9864
No 9
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=99.81 E-value=7.8e-21 Score=194.83 Aligned_cols=257 Identities=17% Similarity=0.209 Sum_probs=171.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccch-hHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRV-RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~v-a~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
+++++||.||.+... +...++.++|.+ .++++.+.... ..... ....+....++|+||++|||
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~-~g~~~~~~~t~~~~~~~--------------~~~~~~~~~~~d~vvv~GGD 92 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLRE-EGMTIHVRVTWEKGDAA--------------RYVEEARKFGVATVIAGGGD 92 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHT-TTCCEEEEECCSTTHHH--------------HHHHHHHHHTCSEEEEEESH
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHH-cCCcEEEEEecCcchHH--------------HHHHHHHhcCCCEEEEEccc
Confidence 678999999987665 667889999985 56766554321 11000 00001112458999999999
Q ss_pred hHHHHHHHhcC----CCCCcEEEEcCCCCc-cCcCCC-cchHHHHHHHHHcCCc------eEEEE-eeEEE-------EE
Q 008048 343 GTVLWAASIFK----GPVPPIVPFSLGSLG-FMTPFH-SEHYKDYLDSVLRGPI------SITLR-NRLQC-------HV 402 (579)
Q Consensus 343 GTlL~AAr~~~----~~~~PILGINlG~LG-FLt~~~-~edi~~~L~~il~G~y------~Ie~R-~rL~v-------~V 402 (579)
|||+.+++.+. +..+|+..|++|+.| |...+. +.++.++++.+++|++ .++.| ..+.+ .+
T Consensus 93 GTl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~~g~~~~iDlg~v~~r~~fl~~~~~G~da~v 172 (332)
T 2bon_A 93 GTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRI 172 (332)
T ss_dssp HHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEEEEEEETTSCEESSEEEEEEEEEC
T ss_pred hHHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcCCCCCHHHHHHHHHcCCeEEeeEEEECCceEEEEEEeECccHHH
Confidence 99999999987 778999999999999 666787 7889999999999988 44444 44431 11
Q ss_pred eec-cccccccccCcceeeEeEEeccCCCcceeeeEEEeCCeeeEEEeeceEEEcCCCChHHHHhhcCCCCCCC------
Q 008048 403 IRD-AAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHP------ 475 (579)
Q Consensus 403 ~r~-~~~~~~~~~~~~~ALNDVvI~rg~~s~mi~leV~IDge~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P------ 475 (579)
.++ ....+.......|++|- +.+-...+...+++.+||+. +++|+++|++..|+ | ++||+++.|
T Consensus 173 ~~~~~~~~k~~~G~~~Y~~~~--l~~l~~~~~~~~~i~~dg~~---~~~~~~~v~v~N~~--~--~ggg~~i~P~a~~~D 243 (332)
T 2bon_A 173 TTETPEKLKAALGSVSYIIHG--LMRMDTLQPDRCEIRGENFH---WQGDALVIGIGNGR--Q--AGGGQQLCPNALIND 243 (332)
T ss_dssp ----------CCHHHHHHHHH--TSCEEEEECEEEEEEETTEE---EEEEESEEEEESSS--C--BTTTBCSCTTCCTTS
T ss_pred HHHhhHHhHhcccHHHHHHHH--HHHHhhCCCeeEEEEECCEE---EEEEEEEEEEECCC--c--cCCCcccCCCCCCCC
Confidence 111 00000000000233332 11111234567889999986 46899999986665 4 789999999
Q ss_pred -CCCeEEEEEcCCCCCCC----------CCeeeCCCCEEEEEeecCCCCCEEEEEeCCcccccCCCCEEEEEecCCceee
Q 008048 476 -QVPGILFTPICPHSLSF----------RPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPT 544 (579)
Q Consensus 476 -~v~aiviTPIcPHsLs~----------RPlVlp~~~~I~I~v~~~sr~~a~vsiDGq~~~~L~~GD~I~I~~S~~~v~l 544 (579)
.++.++++|+ ++.+.. +++......+|+|+.. .+..+.+||+... ++.+.|+..+..+++
T Consensus 244 G~Ldv~iv~~~-~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~----~~~~~~iDGE~~~----~~~~~i~v~p~al~v 314 (332)
T 2bon_A 244 GLLQLRIFTGD-EILPALVSTLKSDEDNPNIIEGASSWFDIQAP----HDITFNLDGEPLS----GQNFHIEILPAALRC 314 (332)
T ss_dssp SCEEEEEECCS-SCCHHHHHHHHTTCCCTTEEEEEESEEEEEEE----EEEEEEETTEEEE----EEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCH-HHHHHHHHHHHcCCCCCcEEEEEeeEEEEEEC----CCCeEEecCCCCC----CceEEEEEECCeeEE
Confidence 5678899999 884433 5566666678887752 2468999998754 578999999999997
Q ss_pred eeecCCCCChHH
Q 008048 545 ACQVDSTDDFFR 556 (579)
Q Consensus 545 v~l~~~~~dff~ 556 (579)
+. +...+|+.
T Consensus 315 l~--p~~~~~~~ 324 (332)
T 2bon_A 315 RL--PPDCPLLR 324 (332)
T ss_dssp EE--CTTCTTSC
T ss_pred Ee--CCCccccc
Confidence 64 45566654
No 10
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=98.90 E-value=1.5e-07 Score=95.21 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=83.3
Q ss_pred CCCCCEEEEEEcCCC--hhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE
Q 008048 261 ESPPQTVVILTKPNS--NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT 338 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~--~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv 338 (579)
..+|++++||.||.. ..+.+...++.++|.+. ++++.+.......-. ..-..+...++|+||+
T Consensus 5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~-~~~~~~~~t~~~~~a--------------~~~~~~~~~~~d~vv~ 69 (304)
T 3s40_A 5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAA-FPDLHILHTKEQGDA--------------TKYCQEFASKVDLIIV 69 (304)
T ss_dssp CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHH-CSEEEEEECCSTTHH--------------HHHHHHHTTTCSEEEE
T ss_pred cCCCCEEEEEECcccCCCchHHHHHHHHHHHHHc-CCeEEEEEccCcchH--------------HHHHHHhhcCCCEEEE
Confidence 345889999999954 44667788999999864 565543211100000 0011223457899999
Q ss_pred EeCchHHHHHHHhcCC--CCCcEEEEcCCCCccCc-CCC-cchHHHHHHHHHcCCceE
Q 008048 339 LGGDGTVLWAASIFKG--PVPPIVPFSLGSLGFMT-PFH-SEHYKDYLDSVLRGPISI 392 (579)
Q Consensus 339 LGGDGTlL~AAr~~~~--~~~PILGINlG~LGFLt-~~~-~edi~~~L~~il~G~y~I 392 (579)
+|||||+..++..+.. ..+|+..|++|+.+.|+ .+. +.++.++++.+++|...-
T Consensus 70 ~GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~ 127 (304)
T 3s40_A 70 FGGDGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKP 127 (304)
T ss_dssp EECHHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEE
T ss_pred EccchHHHHHHHHHhhCCCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEE
Confidence 9999999999998876 78999999999998665 444 568899999999997543
No 11
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=86.82 E-value=0.49 Score=45.77 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH-
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT- 344 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT- 344 (579)
+|+++.++..+.. ..+.+||.+ .|+++.+-.-... + . .. +...++|.||+.||-+|
T Consensus 2 ~i~vi~h~~~e~~----g~~~~~l~~-~g~~~~~~~~~~~----~--~------~p------~~~~~~d~lii~GGp~~~ 58 (236)
T 3l7n_A 2 RIHFILHETFEAP----GAYLAWAAL-RGHDVSMTKVYRY----E--K------LP------KDIDDFDMLILMGGPQSP 58 (236)
T ss_dssp EEEEEECCTTSCC----HHHHHHHHH-TTCEEEEEEGGGT----C--C------CC------SCGGGCSEEEECCCSSCT
T ss_pred eEEEEeCCCCCCc----hHHHHHHHH-CCCeEEEEeeeCC----C--C------CC------CCccccCEEEECCCCCCc
Confidence 6788887654433 456688876 5777654321111 0 0 00 11246899999999877
Q ss_pred --------------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 345 --------------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 345 --------------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.+...+.+...++|||||-+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 94 (236)
T 3l7n_A 59 SSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGA 94 (236)
T ss_dssp TCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred ccccccCcccchHHHHHHHHHHHHcCCCEEEEchHH
Confidence 4555555555689999999985
No 12
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=86.75 E-value=0.32 Score=50.23 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=67.2
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCC------cc--------cccc-----cccch
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS------YF--------SFVQ-----TWKDE 323 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~------~~--------~~i~-----~~~~~ 323 (579)
+|+|+|++-- +.|-.-...+-+++.... .+.+||--.+=.+.+..... .. +.+. .+...
T Consensus 1 mkrIgIltsGG~~pG~Na~ir~vv~~a~~-~g~~v~Gi~~G~~Gl~~~~~~~l~~~~v~~i~~~GGt~lgtsR~~~~~~~ 79 (319)
T 4a3s_A 1 MKRIGVLTSGGDSPGMNAAVRAVVRKAIY-HDVEVYGIYNGYAGLISGKIEKLELGSVGDIIHRGGTKLYTARCPEFKTV 79 (319)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-TTCEEEEECSTTHHHHHCCEEEECGGGGTTCTTCCSCTTCCCCCHHHHSH
T ss_pred CCEEEEECcCCCcHHHHHHHHHHHHHHHH-CCCEEEEEecchHHHcCCCeecCCHHHHHhHHhcCCCccccCCCCccccH
Confidence 5799999874 456666677778777764 56777642221111211000 00 0000 00011
Q ss_pred HHHhhh-----CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHH
Q 008048 324 KEILLL-----HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 324 ~~~~~l-----~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il 386 (579)
+..+.. ..++|.+|++|||||+-.|.+ +....+|++||.- =++||-|.. +.+.++++++.
T Consensus 80 e~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~-l~~~~i~vigiPkTIDNDl~~td~t~GfdTA~--~~~~~ai~~i~ 154 (319)
T 4a3s_A 80 EGREKGIANLKKLGIEGLVVIGGDGSYMGAKK-LTEHGFPCVGVPGTIDNDIPGTDFTIGFDTAL--NTVIDAIDKIR 154 (319)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTHHHHHHH-HHHTTCCEEEEEEETTCCCTTCSCCEEHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHH-HhccCCcEEEeeccccCCCCCCCCCCCHHHHH--HHHHHHHHHHH
Confidence 111111 246899999999999866554 4567899999953 378886653 33455666554
No 13
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=84.88 E-value=0.52 Score=48.76 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=68.6
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCC------cc--------ccc-----ccccch
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESS------YF--------SFV-----QTWKDE 323 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~------~~--------~~i-----~~~~~~ 323 (579)
+++|+|++-- +.|-.-...+-+++.+.. .+++||--.+=.+.+..... .. +.+ ..+...
T Consensus 1 ~k~i~IltsGGdapGmNaair~vv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 79 (319)
T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIA-NGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEE 79 (319)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHT-TTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSH
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHHH-CCCEEEEEccChHHHcCCCEEECCHHHHHhHHhCCCcccccCCCCccCCH
Confidence 4789999865 457777777888888874 57888642221111111000 00 001 011111
Q ss_pred HHHhh----h-CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHH
Q 008048 324 KEILL----L-HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 324 ~~~~~----l-~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il 386 (579)
+..+. + ..++|.+|++|||||+-.|.++. ..++||+||.- =++||-|.+ +.+-++++++.
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~-~~~i~vvgiPkTIDNDl~~td~t~GfdTA~--~~~~~aid~i~ 154 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLT-RHGFNSIGLPGTIDNDIPYTDATIGYDTAC--MTAMDAIDKIR 154 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHH-HTTCCEEEEEEETTCCCTTCSCCEEHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHH-HhCCCEEEEeecccCCCCCCcCCCCHHHHH--HHHHHHHHHHH
Confidence 11111 1 25799999999999987777665 45799999953 267776654 33445555553
No 14
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=84.71 E-value=0.53 Score=48.69 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhc-----------------CCccc--ccccccch
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTE-----------------SSYFS--FVQTWKDE 323 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~-----------------~~~~~--~i~~~~~~ 323 (579)
+++|+|++-- +.|-.-...+-+++.+.. .+++||--.+=.+.+... ++... ....+...
T Consensus 2 ~k~i~IltsGGdapGmNaair~vv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGssR~~~~~~~ 80 (320)
T 1pfk_A 2 IKKIGVLTSGGDAPGMNAAIRGVVRSALT-EGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHH-TTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CCEEEEEccCCCchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhcCCCEEECCHHHHhhHHhCCCCeeccCCCCCCCCH
Confidence 4799999875 447777777888888775 577886422211111110 00000 00011111
Q ss_pred HHHhh----h-CCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHH
Q 008048 324 KEILL----L-HTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 324 ~~~~~----l-~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il 386 (579)
+..+. + ..++|.+|++|||||+-.|.++. ...+||+||.- =++||-|.+ +.+-++++++.
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~-~~~i~vvgiPkTIDNDl~~td~t~GfdTA~--~~~~~aid~i~ 155 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLT-EMGFPCIGLPGTIDNDIKGTDYTIGFFTAL--STVVEAIDRLR 155 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHH-HTTCCEEEEEBCTTCCCTTCSCCBTHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHH-hhCCCEEEEeccccCCCCCCcCCCCHHHHH--HHHHHHHHHHH
Confidence 11111 1 25799999999999987777665 45899999964 267776654 33445555543
No 15
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=83.94 E-value=0.56 Score=50.21 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.5
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC----------CCCccCcCC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL----------GSLGFMTPF 373 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl----------G~LGFLt~~ 373 (579)
.++|.+|+||||||+-.|.++.. +..+||+||.- -++||=|..
T Consensus 103 ~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~ 160 (419)
T 3hno_A 103 HDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVA 160 (419)
T ss_dssp TTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHH
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHH
Confidence 47899999999999887766542 46799999963 377887654
No 16
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=79.80 E-value=1 Score=49.24 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=75.6
Q ss_pred cCcceEeeecCCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCe-EEEEccchhHhhhhc--CCcc------------
Q 008048 251 RSSKQISLKWESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKL-NIYVEPRVRAELLTE--SSYF------------ 314 (579)
Q Consensus 251 ~s~k~~~l~W~~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi-~V~ve~~va~~l~~~--~~~~------------ 314 (579)
+....-.+-++.+.++|+|++-- +.|..-...+-+++.+....++ +||--.+=...+..+ ....
T Consensus 84 ~agpr~~i~f~~~~~rIgIltsGGdaPGmNaaIravv~~a~~~~g~~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~ 163 (487)
T 2hig_A 84 LAAARSRIHFNPTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHH 163 (487)
T ss_dssp ECCCBSEESSCGGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGG
T ss_pred HcCCcceeeecCCCcEEEEEecCCCcchhhHHHHHHHHHHHHhCCCcEEEEEccCHHHhhhccCCCEEECCHHHHHHHHh
Confidence 33344445555567899999975 4577777778888888653355 666422211112100 0000
Q ss_pred ---ccccc---ccchHHH-hhh-CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC-------C---CCccCc
Q 008048 315 ---SFVQT---WKDEKEI-LLL-HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G---SLGFMT 371 (579)
Q Consensus 315 ---~~i~~---~~~~~~~-~~l-~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl-------G---~LGFLt 371 (579)
+.+.+ -.+.+.+ +.+ ..++|.+|+||||||+-.|..+.. +..+||+||.- | ++||-|
T Consensus 164 ~GGTiLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdT 243 (487)
T 2hig_A 164 YGGTILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQT 243 (487)
T ss_dssp SSSCSSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHH
T ss_pred CCCCeeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHH
Confidence 00110 0001111 111 237999999999999987765542 35689999964 2 778866
Q ss_pred CCCcchHHHHHHHHH
Q 008048 372 PFHSEHYKDYLDSVL 386 (579)
Q Consensus 372 ~~~~edi~~~L~~il 386 (579)
.+ +.+-++++++.
T Consensus 244 Av--~~~~eaId~i~ 256 (487)
T 2hig_A 244 AV--EKAVQAIRAAY 256 (487)
T ss_dssp HH--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHH
Confidence 54 34555666654
No 17
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=78.97 E-value=5.5 Score=41.11 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=51.3
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-+..-....+..++.+.|.+ .++++.+-+.+.. ++....+. .-.+. ...++|+||.||| |
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IIavGG-G 108 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDE-TEISYEIFDEVEE-----NPSFDNVM-----KAVERYRNDSFDFVVGLGG-G 108 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHH-TTCEEEEEEEECS-----SCBHHHHH-----HHHHHHTTSCCSEEEEEES-H
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHH-cCCeEEEeCCccC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC-h
Confidence 799999976433222357888888875 4666543221110 00100000 00111 1347899999999 7
Q ss_pred HHHHHHHhcCC-------------------CCCcEEEEcC
Q 008048 344 TVLWAASIFKG-------------------PVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~~-------------------~~~PILGINl 364 (579)
+++.+++.++- ..+|++-|.+
T Consensus 109 sv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371)
T 1o2d_A 109 SPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371)
T ss_dssp HHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC
Confidence 88888776432 5789988876
No 18
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=78.84 E-value=4.2 Score=42.55 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCChhHHH--HHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 264 PQTVVILTKPNSNSVQI--LCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~--l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
.++++||+-.. .+.. +..++.+.|.+ .++++.+-..+.. ++....+. .-... ...++|+||.||
T Consensus 43 ~~r~liVtd~~--~~~~~g~~~~v~~~L~~-~g~~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 43 IRKVLFLYGGG--SIKKNGVYDQVVDSLKK-HGIEWVEVSGVKP-----NPVLSKVH-----EAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp CCEEEEEECSS--HHHHSSHHHHHHHHHHH-TTCEEEEECCCCS-----SCBHHHHH-----HHHHHHHHTTCSEEEEEE
T ss_pred CCeEEEEECch--HHhhccHHHHHHHHHHH-cCCeEEEecCccC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeC
Confidence 37999998533 2333 57888888875 5676643221110 00000000 00111 135689999999
Q ss_pred CchHHHHHHHhcCC-------------------CCCcEEEEcC
Q 008048 341 GDGTVLWAASIFKG-------------------PVPPIVPFSL 364 (579)
Q Consensus 341 GDGTlL~AAr~~~~-------------------~~~PILGINl 364 (579)
| |+++.+++.++- ..+|++.|.+
T Consensus 110 G-GsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 110 G-GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp S-HHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred C-hhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 9 788888876542 4689998876
No 19
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=77.88 E-value=1 Score=49.94 Aligned_cols=122 Identities=12% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCCCEEEEEEcCC-ChhHHHHHHHHHHHHHh-cCCeEEEEccchhHh----------------hhhcCCccccccc---
Q 008048 261 ESPPQTVVILTKPN-SNSVQILCAQMVRWLRE-QKKLNIYVEPRVRAE----------------LLTESSYFSFVQT--- 319 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~-~~~~~~l~~eii~~L~e-~~gi~V~ve~~va~~----------------l~~~~~~~~~i~~--- 319 (579)
..++++|+|++--. .|..-...+-+++.+.. ..+.+||--.+=... +...+ .++.+.+
T Consensus 69 ~~~~~~igIltsGGdaPGmNa~Ir~vv~~~~~~~~~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~G-GstiLGssR~ 147 (555)
T 2f48_A 69 FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTG-GFDIVSSGRT 147 (555)
T ss_dssp CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCC-SSTTTCCBCC
T ss_pred cCCCcEEEEECcCCCcHhHHHHHHHHHHHHHHhcCCCEEEEEecChHHhcCCCEEECCHHHHHHHHhCC-CCcCCCcCCC
Confidence 45678999998754 46666777888877643 356666532111111 11111 0011110
Q ss_pred -ccchHHH----hhh-CCCccEEEEEeCchHHHHHHHhcC-----CCCCcEEEEcC-------C-----CCccCcCCCcc
Q 008048 320 -WKDEKEI----LLL-HTKVDLVVTLGGDGTVLWAASIFK-----GPVPPIVPFSL-------G-----SLGFMTPFHSE 376 (579)
Q Consensus 320 -~~~~~~~----~~l-~~~~DLVIvLGGDGTlL~AAr~~~-----~~~~PILGINl-------G-----~LGFLt~~~~e 376 (579)
+...+.. +.+ .-++|.+|+||||||+-.|..+.. +..+||+||.- | ++||-|.+ +
T Consensus 148 ~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~--~ 225 (555)
T 2f48_A 148 KIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSAT--K 225 (555)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHH--H
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHH--H
Confidence 1111111 111 257999999999999887775543 34799999952 2 56776653 3
Q ss_pred hHHHHHHHH
Q 008048 377 HYKDYLDSV 385 (579)
Q Consensus 377 di~~~L~~i 385 (579)
.+-++++++
T Consensus 226 ~~~~aId~i 234 (555)
T 2f48_A 226 IYSELIGNL 234 (555)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455666666
No 20
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=77.08 E-value=29 Score=28.50 Aligned_cols=106 Identities=12% Similarity=0.229 Sum_probs=60.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE----
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT---- 338 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv---- 338 (579)
++.+|+||-. ++.. ...+..+|.+ .|++|..-.+....+. .+. -...+|+||+
T Consensus 6 ~~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~~~-~~~~~dlvi~D~~l 62 (136)
T 3hdv_A 6 ARPLVLVVDD--NAVN---REALILYLKS-RGIDAVGADGAEEARL----------------YLH-YQKRIGLMITDLRM 62 (136)
T ss_dssp -CCEEEEECS--CHHH---HHHHHHHHHH-TTCCEEEESSHHHHHH----------------HHH-HCTTEEEEEECSCC
T ss_pred CCCeEEEECC--CHHH---HHHHHHHHHH-cCceEEEeCCHHHHHH----------------HHH-hCCCCcEEEEeccC
Confidence 3568888763 3333 3455566654 4666654322221110 011 1223788887
Q ss_pred EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCce
Q 008048 339 LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 339 LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y~ 391 (579)
-|+|| .+++..+......+||+-+. .|-.+||. +++++++...|+++..|...
T Consensus 63 ~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 63 QPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp SSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 36677 45566665433567888774 37777755 48899999999999988644
No 21
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=76.49 E-value=2.1 Score=41.88 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=47.5
Q ss_pred EEEEEEcCCC--------hhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEE
Q 008048 266 TVVILTKPNS--------NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVV 337 (579)
Q Consensus 266 ~V~IV~Kp~~--------~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVI 337 (579)
.|||...... ....-+....++.|.+.++.-+.+..... .. +.+....+|.+|
T Consensus 6 ~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~------------------~~-~~~~l~~~DGli 66 (254)
T 3fij_A 6 VIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDP------------------ST-AVQAISLVDGLL 66 (254)
T ss_dssp EEEEEC------------------CHHHHHHHHHHTCEEEEECCCCG------------------GG-HHHHHHTCSEEE
T ss_pred EEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCc------------------hH-HHHHHhhCCEEE
Confidence 6888876321 11223346677777765556555532110 11 223345689999
Q ss_pred EEeCch-----------------------HHHHHHHhcCCCCCcEEEEcCCC
Q 008048 338 TLGGDG-----------------------TVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 338 vLGGDG-----------------------TlL~AAr~~~~~~~PILGINlG~ 366 (579)
.-||-+ ..+...+.+...++|||||-+|.
T Consensus 67 l~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~ 118 (254)
T 3fij_A 67 LTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGM 118 (254)
T ss_dssp ECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred ECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHH
Confidence 999944 25666666666789999999885
No 22
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=74.67 E-value=4.1 Score=42.74 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=47.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++++||+-+.-... +..++.+.|.+ ++++.+.. +. .+. ....+... ..... ..++|+||.||| |.
T Consensus 53 ~r~liVtd~~~~~~--~~~~v~~~L~~--g~~~~~~~-~~----~~p-~~~~v~~~--~~~~~--~~~~d~IIavGG-Gs 117 (387)
T 3uhj_A 53 KRALVLIDRVLFDA--LSERIGKSCGD--SLDIRFER-FG----GEC-CTSEIERV--RKVAI--EHGSDILVGVGG-GK 117 (387)
T ss_dssp SEEEEEECTTTHHH--HHHHC--------CCEEEEEE-CC----SSC-SHHHHHHH--HHHHH--HHTCSEEEEESS-HH
T ss_pred CEEEEEECchHHHH--HHHHHHHHHHc--CCCeEEEE-cC----CCC-CHHHHHHH--HHHHh--hcCCCEEEEeCC-cH
Confidence 79999998766543 67888888864 67652211 10 000 00001000 00111 246899999999 89
Q ss_pred HHHHHHhcC-CCCCcEEEEcC
Q 008048 345 VLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~-~~~~PILGINl 364 (579)
++.+++.++ ...+|++-|..
T Consensus 118 ~~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 118 TADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp HHHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHhcCCCEEEecC
Confidence 999888765 24689999876
No 23
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=72.82 E-value=6.1 Score=40.87 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=50.9
Q ss_pred CCEEEEEEcCCChhHH-HHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQ-ILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~-~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGG 341 (579)
.++++||+.+.-.... .+..++.+.|.+ .++++.+-..+.. ++....+. .-.+. ...++|+||.|||
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLRE-AGIEVAIFDGVEP-----NPKDTNVR-----DGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHH-TTCEEEEECCCCS-----SCBHHHHH-----HHHHHHHHTTCCEEEEEES
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHH-cCCeEEEECCccC-----CCCHHHHH-----HHHHHHHhcCCCEEEEeCC
Confidence 4799999976432210 147888888875 5777643221111 01100000 00111 1256899999999
Q ss_pred chHHHHHHHhcCC-------------------CCCcEEEEcC
Q 008048 342 DGTVLWAASIFKG-------------------PVPPIVPFSL 364 (579)
Q Consensus 342 DGTlL~AAr~~~~-------------------~~~PILGINl 364 (579)
|+++.+++.++- ..+|++-|.+
T Consensus 102 -Gsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 102 -GSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp -HHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred -cchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 788888776532 4689988876
No 24
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=71.93 E-value=2.6 Score=48.30 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcC-Ccc---------------cccc-----
Q 008048 261 ESPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES-SYF---------------SFVQ----- 318 (579)
Q Consensus 261 ~~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~-~~~---------------~~i~----- 318 (579)
..++++|+|++-- +.|..-...+-+++.... .+.+||--.+=.+.+.... ... +.+.
T Consensus 12 ~~~~krIaIltsGGdaPGmNaaIravvr~a~~-~g~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGTiLGSsR~~ 90 (762)
T 3o8l_A 12 LGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIF-TGARVFFVHEGYQGLVDGGDHIREATWESVSMMLQLGGTVIGSARCK 90 (762)
T ss_dssp TTSSCEEEEECCSSCCTTHHHHHHHHHHHHHH-TTCEEECCSTHHHHHHSCGGGCCBCCSGGGTTCTTCCSCSSCCCCCC
T ss_pred cccCcEEEEEccCCCchhHhHHHHHHHHHHHH-CCCEEEEEecChhhhhcCCCcEEECCHHHHHhHHhCCCccccCCCCC
Confidence 3457899999875 456666667777776654 5788875322222222110 000 0010
Q ss_pred cccchHHHhhh-----CCCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEcC-------
Q 008048 319 TWKDEKEILLL-----HTKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL------- 364 (579)
Q Consensus 319 ~~~~~~~~~~l-----~~~~DLVIvLGGDGTlL~AAr~~----------------------~~~~~PILGINl------- 364 (579)
.+...+..... ..++|.+|++|||||+-.|..+. ....+||+||.-
T Consensus 91 ~f~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~ 170 (762)
T 3o8l_A 91 DFREREGRLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFC 170 (762)
T ss_dssp GGGSHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCC
Confidence 11111111111 24789999999999998776431 124799999953
Q ss_pred C---CCccCcCCCcchHHHHHHHHHcCCce
Q 008048 365 G---SLGFMTPFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 365 G---~LGFLt~~~~edi~~~L~~il~G~y~ 391 (579)
| ++||-|.+ +.+-++++++..--.+
T Consensus 171 gTD~TiGfdTA~--~~i~eaid~i~~tA~S 198 (762)
T 3o8l_A 171 GTDMTIGTDSAL--HRITEIVDAITTTAQS 198 (762)
T ss_dssp SCSCCBTHHHHH--HHHHHHHHHHHTTCCS
T ss_pred CCcCCcCchhHH--HHHHHHHHHHHHhhhc
Confidence 2 67776654 4466778887654443
No 25
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=70.33 E-value=5.3 Score=35.29 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=41.8
Q ss_pred CCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC---CCcchHHHHHHHHHcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~---~~~edi~~~L~~il~G 388 (579)
..+|++|+-||-||++-++.. ++|++.+.. ...|++.+ ++++++.++|..+++.
T Consensus 85 ~~ad~~I~~~G~~t~~Ea~~~----G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 85 PKTRAFITHGGANGIYEAIYH----GIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TTEEEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CCcCEEEEcCCccHHHHHHHc----CCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 789999999999999998753 579998865 24566554 4677888888888754
No 26
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=70.03 E-value=5 Score=41.44 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++++||+-+.. ..+..++.+.|.+ .++.++- .+.. ++..+.+... .... ...++|+||.+|| |
T Consensus 34 ~~r~liVtd~~~---~~~~~~v~~~L~~-~~~~v~~--~v~~-----~p~~~~v~~~--~~~~--~~~~~D~IIavGG-G 97 (353)
T 3hl0_A 34 LSRALVLSTPQQ---KGDAEALASRLGR-LAAGVFS--EAAM-----HTPVEVTKTA--VEAY--RAAGADCVVSLGG-G 97 (353)
T ss_dssp CCCEEEECCGGG---HHHHHHHHHHHGG-GEEEEEC--CCCT-----TCBHHHHHHH--HHHH--HHTTCSEEEEEES-H
T ss_pred CCEEEEEecCch---hhHHHHHHHHHhh-CCcEEec--CcCC-----CCcHHHHHHH--HHHH--hccCCCEEEEeCC-c
Confidence 478999987553 3467888888865 3444431 1100 0000000000 0001 1257899999999 8
Q ss_pred HHHHHHHhcC-CCCCcEEEEcCC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSLG 365 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINlG 365 (579)
+++.+++.++ ...+|++.|..-
T Consensus 98 s~iD~aK~iA~~~~~p~i~IPTT 120 (353)
T 3hl0_A 98 STTGLGKAIALRTDAAQIVIPTT 120 (353)
T ss_dssp HHHHHHHHHHHHHCCEEEEEECS
T ss_pred HHHHHHHHHHhccCCCEEEEeCC
Confidence 9999988765 356899988773
No 27
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=69.65 E-value=5.8 Score=41.06 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=50.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++++||+-+.. ..+..++.+.|.+. ++.++- .+.. ++..+.+... ..... ..++|+||.||| |
T Consensus 36 ~~r~liVtd~~~---~~~~~~v~~~L~~~-~~~~f~--~v~~-----~p~~~~v~~~--~~~~~--~~~~D~IIavGG-G 99 (358)
T 3jzd_A 36 AKRALVLCTPNQ---QAEAERIADLLGPL-SAGVYA--GAVM-----HVPIESARDA--TARAR--EAGADCAVAVGG-G 99 (358)
T ss_dssp CSCEEEECCGGG---HHHHHHHHHHHGGG-EEEEEC--CCCT-----TCBHHHHHHH--HHHHH--HHTCSEEEEEES-H
T ss_pred CCeEEEEeCCcH---HHHHHHHHHHhccC-CEEEec--CCcC-----CCCHHHHHHH--HHHhh--ccCCCEEEEeCC-c
Confidence 478999986543 34678888888653 444431 1110 0000000000 00011 246899999999 8
Q ss_pred HHHHHHHhcC-CCCCcEEEEcC
Q 008048 344 TVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~-~~~~PILGINl 364 (579)
+++.+++.++ ...+|++-|..
T Consensus 100 sviD~aK~iA~~~~~p~i~IPT 121 (358)
T 3jzd_A 100 STTGLGKAIALETGMPIVAIPT 121 (358)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHhccCCCEEEEeC
Confidence 9999988765 35689999887
No 28
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=69.50 E-value=2.4 Score=41.97 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
.++|+||-+...+.. ..+.+||.+ .|+++.+-..... + . . .....++|.+|+.||-+
T Consensus 3 ~~~vliiqh~~~e~~----~~i~~~l~~-~G~~v~v~~~~~~----~--~------~------p~~~~~~d~lIl~GGp~ 59 (250)
T 3m3p_A 3 LKPVMIIQFSASEGP----GHFGDFLAG-EHIPFQVLRMDRS----D--P------L------PAEIRDCSGLAMMGGPM 59 (250)
T ss_dssp CCCEEEEESSSSCCC----HHHHHHHHH-TTCCEEEEEGGGT----C--C------C------CSCGGGSSEEEECCCSS
T ss_pred CCeEEEEECCCCCCH----HHHHHHHHH-CCCeEEEEeccCC----C--c------C------cCccccCCEEEECCCCC
Confidence 457899977544332 446677875 5666544221100 0 0 0 01124589999999976
Q ss_pred HH----------HHHHHhcCCCCCcEEEEcCCC
Q 008048 344 TV----------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 Tl----------L~AAr~~~~~~~PILGINlG~ 366 (579)
+. +...+.+...++||+||-+|.
T Consensus 60 ~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 92 (250)
T 3m3p_A 60 SANDDLPWMPTLLALIRDAVAQRVPVIGHCLGG 92 (250)
T ss_dssp CTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred cccccchHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 52 233333334578999999886
No 29
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=69.31 E-value=5.4 Score=41.46 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCChhHHH--HHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQI--LCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~--l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
.++++||+-+. +.+ +..++.+.|.+ .++++.+-..+.. ++....+... ..... ..++|+||.|||
T Consensus 31 ~~~~liVtd~~---~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~-----~p~~~~v~~~--~~~~~--~~~~D~IIavGG 97 (383)
T 3ox4_A 31 FKNALIVSDAF---MNKSGVVKQVADLLKA-QGINSAVYDGVMP-----NPTVTAVLEG--LKILK--DNNSDFVISLGG 97 (383)
T ss_dssp CCEEEEEEEHH---HHHTTHHHHHHHHHHT-TTCEEEEEEEECS-----SCBHHHHHHH--HHHHH--HHTCSEEEEEES
T ss_pred CCEEEEEECCc---hhhCchHHHHHHHHHH-cCCeEEEECCccC-----CCCHHHHHHH--HHHHH--hcCcCEEEEeCC
Confidence 47999998753 333 57889999975 5776643221110 0110001000 00111 246899999999
Q ss_pred chHHHHHHHhcC-------------------CCCCcEEEEcC
Q 008048 342 DGTVLWAASIFK-------------------GPVPPIVPFSL 364 (579)
Q Consensus 342 DGTlL~AAr~~~-------------------~~~~PILGINl 364 (579)
|.++.+++.+. ...+|++-|..
T Consensus 98 -Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 138 (383)
T 3ox4_A 98 -GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINT 138 (383)
T ss_dssp -HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEEC
T ss_pred -cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeC
Confidence 89998887653 12688888876
No 30
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=68.91 E-value=2.3 Score=48.73 Aligned_cols=123 Identities=16% Similarity=0.072 Sum_probs=71.8
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcC------Ccc--------ccccc-----cc
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES------SYF--------SFVQT-----WK 321 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~------~~~--------~~i~~-----~~ 321 (579)
.++++|+|++-- +.|..-...+-+++.+.. .+.+||--.+=...+.... ... +.+.+ ..
T Consensus 398 ~~~~~IgIltsGGdapGmNaaIravv~~~~~-~g~~v~Gi~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~~ 476 (762)
T 3o8l_A 398 SGSYTVAVMNVGAPAAGMNAAVRSTVRIGLI-QGNRVLVVHDGFEGPAKGQIEEAGWSYVGGWTGQGGSKLGSKRTLPKK 476 (762)
T ss_dssp SSCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEESSTTHHHHHTCEEECCTTTTSSCTTCCSCSSCEECCCSGG
T ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHHHHHH-CCCEEEEEeccccccccCCEEECCHHHhhhHHhCCCceeecCCCCcHH
Confidence 457899999875 556666677888888765 4677775222112221100 000 00110 00
Q ss_pred chHHHhhh--CCCccEEEEEeCchHHHHHHHhc------CCCCCcEEEEcC----------CCCccCcCCCcchHHHHHH
Q 008048 322 DEKEILLL--HTKVDLVVTLGGDGTVLWAASIF------KGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLD 383 (579)
Q Consensus 322 ~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~------~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~ 383 (579)
....+.+. .-++|.+|++|||||+-.|..+. ....+||+||.- =++||-|.+ +.+-++++
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~--~~~~~aid 554 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTAL--NTICTTCD 554 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHH--HHHHHHHH
Confidence 11111111 24789999999999998876553 234799999964 267776653 44667787
Q ss_pred HHHc
Q 008048 384 SVLR 387 (579)
Q Consensus 384 ~il~ 387 (579)
++..
T Consensus 555 ~i~~ 558 (762)
T 3o8l_A 555 RIKQ 558 (762)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7754
No 31
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=66.88 E-value=2.4 Score=48.73 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCc-------c--------ccccc-----cc-
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSY-------F--------SFVQT-----WK- 321 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~-------~--------~~i~~-----~~- 321 (579)
+++|+|++-- +.|..-...+-+++.... .+.+||--.+=.+.+..++.. . +.+.+ ..
T Consensus 393 ~~~IgIltsGGdapGmNaaIravv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~~l~~~~v~~i~~~GGt~LGTsR~~~~~~ 471 (766)
T 3o8o_B 393 RLKIAIVNVGAPAGGINSAVYSMATYCMS-QGHRPYAIYNGWSGLARHESVRSLNWKDMLGWQSRGGSEIGTNRVTPEEA 471 (766)
T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHHHCCEEECCGGGGTTGGGCCSCTTCCCCCCGGGG
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHHHHH-CCCEEEEEecChHhhCCCCceEECCHHHHhhHhhCCCceEccCCCCCccc
Confidence 5899999875 456666666778887765 367776532222222210000 0 00100 00
Q ss_pred chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEcC-------C---CCccCcCCCcchHHHHHH
Q 008048 322 DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYLD 383 (579)
Q Consensus 322 ~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~------~~~~PILGINl-------G---~LGFLt~~~~edi~~~L~ 383 (579)
+...+.+. .-++|.+|+||||||+-.+.++.. ..++||+||.- | ++||-|.+ +.+-++++
T Consensus 472 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~--~~~~~aid 549 (766)
T 3o8o_B 472 DLGMIAYYFQKYEFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTAL--NALMEYCD 549 (766)
T ss_dssp CHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHH--HHHHHHHH
Confidence 01111111 236899999999999987766643 13689999964 2 67776654 34556666
Q ss_pred HHH
Q 008048 384 SVL 386 (579)
Q Consensus 384 ~il 386 (579)
++.
T Consensus 550 ~i~ 552 (766)
T 3o8o_B 550 VVK 552 (766)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 32
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=66.87 E-value=2.7 Score=49.29 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=68.4
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCc-------c--------cccc-----ccc
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSY-------F--------SFVQ-----TWK 321 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~-------~--------~~i~-----~~~ 321 (579)
+.++|+|++-- +.|..-...+-+++.... .+.+||--.+=.+.+...+.. . +.+. .+.
T Consensus 570 ~~~rIgIltsGGdapGmNaaIravv~~a~~-~g~~V~Gi~~G~~GL~~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~ 648 (941)
T 3opy_B 570 KRKKIAIINVGAPAGGMNSAVYSMATYCMS-RGHVPYAIHNGFSGLARHESVRSINWLDIEGWGSLGGSEIGTNRTLPND 648 (941)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCSSCEECCCTTT
T ss_pred cCcEEEEEecCCCcHHHHHHHHHHHHHHHH-CCCEEEEEccchHhhCcCCcEEECCHHHHhChhhCCCcEeccCCCCccc
Confidence 46899999875 456666666778887765 467777533222222200000 0 0010 000
Q ss_pred -chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEcC----------CCCccCcCCCcchHHHHH
Q 008048 322 -DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL----------GSLGFMTPFHSEHYKDYL 382 (579)
Q Consensus 322 -~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~------~~~~PILGINl----------G~LGFLt~~~~edi~~~L 382 (579)
....+.+. .-++|.+|+||||||+-.+..+.. ..++||+||.- =++||-|.+ +.+-+++
T Consensus 649 ~~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~--~~i~eai 726 (941)
T 3opy_B 649 ADIGMIAYFFEKYGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCL--NSFMEYC 726 (941)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH--HHHHHHH
T ss_pred chHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHH--HHHHHHH
Confidence 01111111 247899999999999876655432 13799999964 267776654 3455667
Q ss_pred HHHH
Q 008048 383 DSVL 386 (579)
Q Consensus 383 ~~il 386 (579)
+++.
T Consensus 727 d~i~ 730 (941)
T 3opy_B 727 DVIK 730 (941)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 33
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=66.79 E-value=8.5 Score=40.16 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+-...-....+..++.+.|. ++++.+-+.+.. ++....+. .-.+. ...++|+||.||| |
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~---g~~~~~f~~v~~-----~p~~~~v~-----~~~~~~~~~~~D~IIavGG-G 116 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFGGIEP-----NPAYETLM-----NAVKLVREQKVTFLLAVGG-G 116 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT---TSEEEEECCCCS-----SCBHHHHH-----HHHHHHHHHTCCEEEEEES-H
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC---CCEEEEeCCcCC-----CcCHHHHH-----HHHHHHHHcCCCEEEEeCC-c
Confidence 79999985432222225677777773 566543222110 00000000 00011 1246799999999 7
Q ss_pred HHHHHHHhcCC----------------------CCCcEEEEcC
Q 008048 344 TVLWAASIFKG----------------------PVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~~----------------------~~~PILGINl 364 (579)
+++.+++.++- ..+|++.|..
T Consensus 117 sviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPT 159 (408)
T 1oj7_A 117 SVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLT 159 (408)
T ss_dssp HHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEES
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeC
Confidence 88888765431 4578988876
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=66.35 E-value=59 Score=27.66 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE---
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT--- 338 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv--- 338 (579)
.++.+|+||-. ++.. ...+.+.|.+ .|+.|..-.+..+.+. .+. ...+|+||+
T Consensus 5 ~~~~~ILivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~al~----------------~l~--~~~~dlii~D~~ 60 (154)
T 3gt7_A 5 NRAGEILIVED--SPTQ---AEHLKHILEE-TGYQTEHVRNGREAVR----------------FLS--LTRPDLIISDVL 60 (154)
T ss_dssp --CCEEEEECS--CHHH---HHHHHHHHHT-TTCEEEEESSHHHHHH----------------HHT--TCCCSEEEEESC
T ss_pred cCCCcEEEEeC--CHHH---HHHHHHHHHH-CCCEEEEeCCHHHHHH----------------HHH--hCCCCEEEEeCC
Confidence 34568888853 3333 4455566654 4677654332222110 011 235788888
Q ss_pred -EeCch-HHHHHHHhcC-CCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCc
Q 008048 339 -LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 339 -LGGDG-TlL~AAr~~~-~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y 390 (579)
-|+|| .+++..+... ...+||+-+. .|-.+||. +++++++...|..++.+.-
T Consensus 61 l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 61 MPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp CSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 36677 3555566543 2568888774 37778865 4889999999999987653
No 35
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=66.15 E-value=2.6 Score=48.56 Aligned_cols=122 Identities=19% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhh-hcC------Ccc--------ccccc-----c
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL-TES------SYF--------SFVQT-----W 320 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~-~~~------~~~--------~~i~~-----~ 320 (579)
.++++|+|++-- +.|..-...+-+++.... .+.+||--.+=...+. ... ... +.+.+ +
T Consensus 391 ~~~~~IgIltsGGdapGmNaaIravv~~a~~-~g~~v~Gi~~G~~GL~~~~~~~~L~~~~v~~i~~~GGt~LGTsR~~~~ 469 (787)
T 3o8o_A 391 SDRLNIGIVHVGAPSAALNAATRAATLYCLS-HGHKPYAIMNGFSGLIQTGEVKELSWIDVENWHNLGGSEIGTNRSVAS 469 (787)
T ss_dssp SCCCEEEEEEESSCCSSHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHHHCCEEECCTTTTTTGGGCCSCTTCCBCCCGG
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCEEEEEccChhhhCCCCCEEECCHHHHhhhhcCCCceeccCCCCch
Confidence 347899999875 456666666777777764 4677765332222222 100 000 00110 0
Q ss_pred cchHHHhhh--CCCccEEEEEeCchHHHHHHHhcC------CCCCcEEEEcC-------C---CCccCcCCCcchHHHHH
Q 008048 321 KDEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK------GPVPPIVPFSL-------G---SLGFMTPFHSEHYKDYL 382 (579)
Q Consensus 321 ~~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~------~~~~PILGINl-------G---~LGFLt~~~~edi~~~L 382 (579)
.....+.+. .-++|.+|+||||||+-.+.++.. ..++||+||.- | ++||=|.++ .+-+++
T Consensus 470 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~--~~~eai 547 (787)
T 3o8o_A 470 EDLGTIAYYFQKNKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLN--ALVNYT 547 (787)
T ss_dssp GCHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHH--HHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHH--HHHHHH
Confidence 011111111 247899999999999987776542 13699999964 2 677766542 355666
Q ss_pred HHHH
Q 008048 383 DSVL 386 (579)
Q Consensus 383 ~~il 386 (579)
++|.
T Consensus 548 d~i~ 551 (787)
T 3o8o_A 548 DDIK 551 (787)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 36
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=66.03 E-value=3.2 Score=48.61 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcC-Ccc----------------cccc-----
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES-SYF----------------SFVQ----- 318 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~-~~~----------------~~i~----- 318 (579)
.++++|+|++-- +.|..-...+-+++.+.. .|++||--.+=...+.... ..+ +.+.
T Consensus 179 ~~~krIgIlTsGGdaPGmNAaIRaVVr~a~~-~g~~V~Gi~~Gy~GLl~g~~~~i~~l~~~~V~~i~~~GGTiLGSsR~~ 257 (941)
T 3opy_B 179 PVRKTIGVMTSGGDSPGMNPFVRAVVRAGIY-KGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCK 257 (941)
T ss_dssp -CCCCEEEEECSSCCTTHHHHHHHHHHHHHH-TTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCS
T ss_pred ccCCEEEEEeeCcCchhHHHHHHHHHHHHHH-CCCEEEEEeCChHHhccCCcceEEECCHHHHHhHHhCCCceeccCCCC
Confidence 347899999975 456666667778887764 5777765322222222111 000 0000
Q ss_pred cccchHHH----hh-hCCCccEEEEEeCchHHHHHHHhc----------C------------CCCCcEEEEcC-------
Q 008048 319 TWKDEKEI----LL-LHTKVDLVVTLGGDGTVLWAASIF----------K------------GPVPPIVPFSL------- 364 (579)
Q Consensus 319 ~~~~~~~~----~~-l~~~~DLVIvLGGDGTlL~AAr~~----------~------------~~~~PILGINl------- 364 (579)
.+...... +. ...++|.+|+||||||+-.|..+. . ...+||+||.-
T Consensus 258 ~f~~~~~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~ 337 (941)
T 3opy_B 258 EFRERSGRLKACKNMIDMGIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMS 337 (941)
T ss_dssp GGGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCS
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCC
Confidence 11111111 11 124789999999999998775421 1 24689999953
Q ss_pred C---CCccCcCCCcchHHHHHHHHHcCCc
Q 008048 365 G---SLGFMTPFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 365 G---~LGFLt~~~~edi~~~L~~il~G~y 390 (579)
| ++||-|.+ +.+-+++++|..--.
T Consensus 338 gTD~TiGfdTAv--~~i~eaId~I~~tA~ 364 (941)
T 3opy_B 338 STDATIGAFSSL--DRICRAIDYIDATAN 364 (941)
T ss_dssp SCSSCEEHHHHH--HHHHHHHHHHHSCC-
T ss_pred CCCCCCChHHHH--HHHHHHHHHHHhhhh
Confidence 2 67776654 446677877765433
No 37
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=65.94 E-value=31 Score=36.37 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=53.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~--ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
..++++||+.+.-... +..++.+.|.+. ++++. +-+.... .+....+...- +.-.+.-.++.|+||.||
T Consensus 61 ~~~rvlIVtd~~v~~~--~~~~v~~~L~~~-g~~~~~~~~~~gE~-----~kt~~~v~~~~-~~l~~~~~~R~d~IIAvG 131 (390)
T 3okf_A 61 AKQKVVIVTNHTVAPL--YAPAIISLLDHI-GCQHALLELPDGEQ-----YKTLETFNTVM-SFLLEHNYSRDVVVIALG 131 (390)
T ss_dssp TTCEEEEEEETTTHHH--HHHHHHHHHHHH-TCEEEEEEECSSGG-----GCBHHHHHHHH-HHHHHTTCCTTCEEEEEE
T ss_pred CCCEEEEEECCcHHHH--HHHHHHHHHHHc-CCeEEEEEECCCcC-----CchHHHHHHHH-HHHHhcCCCcCcEEEEEC
Confidence 4689999998876544 678899999763 66542 2111100 00000000000 000111123448999999
Q ss_pred CchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 341 GDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 341 GDGTlL~AAr~~~---~~~~PILGINl 364 (579)
| |.++.+++.++ ..++|++-|.+
T Consensus 132 G-Gsv~D~ak~~Aa~~~rgip~I~IPT 157 (390)
T 3okf_A 132 G-GVIGDLVGFAAACYQRGVDFIQIPT 157 (390)
T ss_dssp S-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred C-cHHhhHHHHHHHHhcCCCCEEEeCC
Confidence 9 78888887653 46789888866
No 38
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=65.91 E-value=17 Score=37.39 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=50.2
Q ss_pred CCEEEEEEcCCChhHHH--HHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 264 PQTVVILTKPNSNSVQI--LCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~--l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
.++++||+.+ .+.+ +..++.+.|.+ .++++.+-..+.. ++....+. .-.+. ...++|+||.||
T Consensus 31 ~~~~livtd~---~~~~~g~~~~v~~~L~~-~g~~~~~~~~~~~-----~p~~~~v~-----~~~~~~~~~~~d~IIavG 96 (386)
T 1rrm_A 31 YQKALIVTDK---TLVQCGVVAKVTDKMDA-AGLAWAIYDGVVP-----NPTITVVK-----EGLGVFQNSGADYLIAIG 96 (386)
T ss_dssp CCEEEEECBH---HHHHTTHHHHHHHHHHH-TTCEEEEECBCCS-----SCBHHHHH-----HHHHHHHHHTCSEEEEEE
T ss_pred CCEEEEEECc---chhhchHHHHHHHHHHH-cCCeEEEECCccC-----CCCHHHHH-----HHHHHHHhcCcCEEEEeC
Confidence 4799999853 3333 57888889975 5777643221111 01100000 00011 124679999999
Q ss_pred CchHHHHHHHhcC---------------------CCCCcEEEEcC
Q 008048 341 GDGTVLWAASIFK---------------------GPVPPIVPFSL 364 (579)
Q Consensus 341 GDGTlL~AAr~~~---------------------~~~~PILGINl 364 (579)
| |+++.+++.++ ...+|++-|.+
T Consensus 97 G-Gsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 97 G-GSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp S-HHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred C-hHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 9 78888877542 23689998876
No 39
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=65.64 E-value=2.9 Score=49.21 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=67.6
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhh-hcC------Ccc--------ccccc-----cc
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL-TES------SYF--------SFVQT-----WK 321 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~-~~~------~~~--------~~i~~-----~~ 321 (579)
..++|+|++-- +.|..-...+-++++... .+.+||--.+=...+. ... ... +.+.+ +.
T Consensus 597 ~~~rIgIltsGGdaPGmNAaIravV~~a~~-~g~~V~Gi~~G~~GLl~~~~~~~L~~~~V~~i~~~GGTiLGTsR~~~~~ 675 (989)
T 3opy_A 597 SRLNIAIIHVGAPTSALNPATRVATLNSLA-KGHRVFAIRNGFAGLIRHGAVRELNWIDVEDWHNTGGSEIGTNRSLPSD 675 (989)
T ss_dssp GCCEEEEEEESSCCTTHHHHHHHHHHHHHH-TTCEEEEETTHHHHHHHHCCEEEECTTTTTTTTTCCSCSSCCBCCCGGG
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHHH-CCCEEEEEccChhhhcCCCcEEECCHHHhhCHhhCCCcEeccCCCCchh
Confidence 36799999875 456666667778887765 4677775332222222 100 000 00110 11
Q ss_pred chHHHhhh--CCCccEEEEEeCchHHHHHHHhcC---C---CCCcEEEEcC----------CCCccCcCCCcchHHHHHH
Q 008048 322 DEKEILLL--HTKVDLVVTLGGDGTVLWAASIFK---G---PVPPIVPFSL----------GSLGFMTPFHSEHYKDYLD 383 (579)
Q Consensus 322 ~~~~~~~l--~~~~DLVIvLGGDGTlL~AAr~~~---~---~~~PILGINl----------G~LGFLt~~~~edi~~~L~ 383 (579)
....+.+. .-++|.+|+||||||+-.+.++.. . ..+||+||.- =++||=|.+ +.+-++++
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAv--n~~~eaId 753 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCL--NTLSGYCD 753 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHH--HHHHHHHH
Confidence 11111111 236899999999999866554432 1 3799999964 267776543 33455666
Q ss_pred HHH
Q 008048 384 SVL 386 (579)
Q Consensus 384 ~il 386 (579)
++.
T Consensus 754 ~i~ 756 (989)
T 3opy_A 754 AVK 756 (989)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 40
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=64.53 E-value=20 Score=35.58 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=66.5
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE--ccch-hHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV--EPRV-RAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v--e~~v-a~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
+.|++..-...........++++.|.+ .+..+++ .... ...+........+. .+. +..++...+|++|+=||
T Consensus 243 ~~vlv~~G~~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~~~~~~l~~~~~~v~~~-~~~---~~~~~l~~ad~~v~~~g 317 (412)
T 3otg_A 243 PLVYLTLGTSSGGTVEVLRAAIDGLAG-LDADVLVASGPSLDVSGLGEVPANVRLE-SWV---PQAALLPHVDLVVHHGG 317 (412)
T ss_dssp CEEEEECTTTTCSCHHHHHHHHHHHHT-SSSEEEEECCSSCCCTTCCCCCTTEEEE-SCC---CHHHHGGGCSEEEESCC
T ss_pred CEEEEEcCCCCcCcHHHHHHHHHHHHc-CCCEEEEEECCCCChhhhccCCCcEEEe-CCC---CHHHHHhcCcEEEECCc
Confidence 345554433223345566777777765 3555544 2111 11111101111111 121 24456778999999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEcCC-------------CCccCcCC---CcchHHHHHHHHHcC
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTPF---HSEHYKDYLDSVLRG 388 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINlG-------------~LGFLt~~---~~edi~~~L~~il~G 388 (579)
=+|++-|+.. ++|++.+..+ ..|++.+. +++++.++|.++++.
T Consensus 318 ~~t~~Ea~a~----G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 376 (412)
T 3otg_A 318 SGTTLGALGA----GVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE 376 (412)
T ss_dssp HHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHh----CCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 9999988753 5799987653 25776653 678899999988864
No 41
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=63.73 E-value=61 Score=26.72 Aligned_cols=104 Identities=11% Similarity=0.154 Sum_probs=60.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-C-CCccEEEE---
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-H-TKVDLVVT--- 338 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~-~~~DLVIv--- 338 (579)
+.+|+||-. ++.. ...+..+|.+..+++|..-.+..+.+ ..+ . ..+|+||+
T Consensus 4 ~~~ilivdd--~~~~---~~~l~~~L~~~~~~~v~~~~~~~~a~-------------------~~l~~~~~~dlvi~D~~ 59 (140)
T 3lua_A 4 DGTVLLIDY--FEYE---REKTKIIFDNIGEYDFIEVENLKKFY-------------------SIFKDLDSITLIIMDIA 59 (140)
T ss_dssp CCEEEEECS--CHHH---HHHHHHHHHHHCCCEEEEECSHHHHH-------------------TTTTTCCCCSEEEECSC
T ss_pred CCeEEEEeC--CHHH---HHHHHHHHHhccCccEEEECCHHHHH-------------------HHHhcCCCCcEEEEeCC
Confidence 568888743 3333 34455556542577776433322211 111 1 35898887
Q ss_pred E--eCch-HHHHHHHhc-CCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCce
Q 008048 339 L--GGDG-TVLWAASIF-KGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 339 L--GGDG-TlL~AAr~~-~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y~ 391 (579)
+ |.|| .+++..+.. ....+||+-+. .|-.|||.. ++++++...|..+++|...
T Consensus 60 l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 60 FPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp SSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 2 4455 244444541 13567887764 477788664 8999999999999988644
No 42
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=63.58 E-value=12 Score=39.97 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=49.8
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++++||+.+.-.. .+..++.+.|.+ .++++.+.. .. .+. ..+.+ ..-......++|+||.||| |.
T Consensus 92 ~rvlIVtd~~~~~--~~~~~v~~~L~~-~gi~~~~~~-~~----ge~-~~~~v-----~~~~~~~~~~~D~IIAvGG-GS 156 (450)
T 1ta9_A 92 KSAVVLADQNVWN--ICANKIVDSLSQ-NGMTVTKLV-FG----GEA-SLVEL-----DKLRKQCPDDTQVIIGVGG-GK 156 (450)
T ss_dssp SEEEEEEEHHHHH--HTHHHHHHHHHH-TTCEEEEEE-EC----SCC-CHHHH-----HHHHTTSCTTCCEEEEEES-HH
T ss_pred CEEEEEECccHHH--HHHHHHHHHHHH-CCCeEEEEe-eC----CCC-CHHHH-----HHHHHHHhhCCCEEEEeCC-cH
Confidence 4899998643222 367888888875 577652110 00 000 00000 0011111127899999999 79
Q ss_pred HHHHHHhcCC-CCCcEEEEcC
Q 008048 345 VLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~~-~~~PILGINl 364 (579)
++.+++.++- ..+|++-|.+
T Consensus 157 viD~AK~iA~~~giP~I~IPT 177 (450)
T 1ta9_A 157 TMDSAKYIAHSMNLPSIICPT 177 (450)
T ss_dssp HHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEeC
Confidence 9988887652 4689998876
No 43
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=63.12 E-value=8.8 Score=35.50 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=43.5
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hC-CCccEEEEEeCch
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LH-TKVDLVVTLGGDG 343 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~-~~~DLVIvLGGDG 343 (579)
+|+||-+.+. ....++++|++ .|+++.+-+.... ..++.+ +. .+.|.+|..||-|
T Consensus 2 ~i~iiDn~~s-----~~~~i~~~l~~-~G~~~~v~~~~~~-----------------~~~i~~~l~~~~~~~iil~gGpg 58 (192)
T 1i1q_B 2 DILLLDNIDS-----FTWNLADQLRT-NGHNVVIYRNHIP-----------------AQTLIDRLATMKNPVLMLSPGPG 58 (192)
T ss_dssp EEEEEECSCS-----SHHHHHHHHHH-TTCEEEEEETTSC-----------------SHHHHHHHTTCSSEEEEECCCSS
T ss_pred cEEEEECCcc-----HHHHHHHHHHH-CCCeEEEEECCCC-----------------HHHHHHHhhhccCCeEEECCCCc
Confidence 6888886654 24678888876 4666554321100 011111 11 1234588899988
Q ss_pred HH-----H-HHHHhcCCCCCcEEEEcCCC
Q 008048 344 TV-----L-WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 Tl-----L-~AAr~~~~~~~PILGINlG~ 366 (579)
+. . ...+.+ ..++|||||-+|.
T Consensus 59 ~~~~~~~~~~l~~~~-~~~~PilGIC~G~ 86 (192)
T 1i1q_B 59 VPSEAGCMPELLTRL-RGKLPIIGICLGH 86 (192)
T ss_dssp CGGGSTTHHHHHHHH-BTTBCEEEETHHH
T ss_pred CchhCchHHHHHHHH-hcCCCEEEECcCh
Confidence 73 1 122223 3568999999886
No 44
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=63.04 E-value=68 Score=26.98 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=41.9
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCce
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y~ 391 (579)
..+|+||+ -|.|| .++...+.. ...+||+-+. .|-.|||.. ++++++...|..++.|...
T Consensus 50 ~~~dlii~D~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 50 TTPDIVVMDLTLPGPGGIEATRHIRQW-DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp TCCSEEEECSCCSSSCHHHHHHHHHHH-CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCE
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCcc
Confidence 34788886 24566 345555554 3467887764 477788654 8899999999999988654
Q ss_pred E
Q 008048 392 I 392 (579)
Q Consensus 392 I 392 (579)
+
T Consensus 129 ~ 129 (153)
T 3cz5_A 129 M 129 (153)
T ss_dssp E
T ss_pred C
Confidence 3
No 45
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=62.07 E-value=5 Score=46.23 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=67.1
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcc----------------cccc-----cc
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYF----------------SFVQ-----TW 320 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~----------------~~i~-----~~ 320 (579)
+.++|+|++-- +.|-.-...+-+++.+.. .+++||--.+=...+......+ +.+. .+
T Consensus 4 ~~krIgIltsGGdaPGmNaaIravvr~a~~-~g~~V~Gi~~G~~GL~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~f 82 (787)
T 3o8o_A 4 KKKKIAVMTSGGDSPGMNAAVRAVVRTGIH-FGCDVFAVYEGYEGLLRGGKYLKKMAWEDVRGWLSEGGTLIGTARSMEF 82 (787)
T ss_dssp -CCEEEEEEESSCCTTHHHHHHHHHHHHHH-TTCEEEEETTHHHHHHHCTTSEEECCGGGGTTGGGCCSCTTCCCCCSGG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCceeccCCCCcc
Confidence 46899999875 456666667778888865 5788875322222222110000 0000 11
Q ss_pred cchHHHhh-----hCCCccEEEEEeCchHHHHHHHhc----------------------CCCCCcEEEEcC-------C-
Q 008048 321 KDEKEILL-----LHTKVDLVVTLGGDGTVLWAASIF----------------------KGPVPPIVPFSL-------G- 365 (579)
Q Consensus 321 ~~~~~~~~-----l~~~~DLVIvLGGDGTlL~AAr~~----------------------~~~~~PILGINl-------G- 365 (579)
........ ...++|.+|+||||||+-.|..+. ....+||+||.- |
T Consensus 83 ~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~gT 162 (787)
T 3o8o_A 83 RKREGRRQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGT 162 (787)
T ss_dssp GSHHHHHHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTTS
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCCC
Confidence 11111111 124689999999999998775321 124789999953 2
Q ss_pred --CCccCcCCCcchHHHHHHHHH
Q 008048 366 --SLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 366 --~LGFLt~~~~edi~~~L~~il 386 (579)
++||-|.+ +.+-+++++|.
T Consensus 163 D~TiGfdTAl--~~i~eaid~i~ 183 (787)
T 3o8o_A 163 DSTIGAYSAL--ERICEMVDYID 183 (787)
T ss_dssp SCCEEHHHHH--HHHHHHHHHHH
T ss_pred CCCCCcHHHH--HHHHHHHHHHH
Confidence 67776654 33445555553
No 46
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=61.60 E-value=66 Score=26.40 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=58.8
Q ss_pred ecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE
Q 008048 259 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT 338 (579)
Q Consensus 259 ~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv 338 (579)
.+..+..+|+||-. ++.. ...+...|.. .|+.|..-.+....+ ..+. ...+|+||
T Consensus 13 ~~~~~~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~al----------------~~l~--~~~~dlvi- 67 (137)
T 2pln_A 13 LVPRGSMRVLLIEK--NSVL---GGEIEKGLNV-KGFMADVTESLEDGE----------------YLMD--IRNYDLVM- 67 (137)
T ss_dssp --CTTCSEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESCHHHHH----------------HHHH--HSCCSEEE-
T ss_pred ccCCCCCeEEEEeC--CHHH---HHHHHHHHHH-cCcEEEEeCCHHHHH----------------HHHH--cCCCCEEE-
Confidence 34455778888853 3333 3445556654 467665433222211 0111 13589999
Q ss_pred EeC-ch-HHHHHHHhcCCC-CCcEEEEc-------------CCCCccCcC-C-CcchHHHHHHHHHcC
Q 008048 339 LGG-DG-TVLWAASIFKGP-VPPIVPFS-------------LGSLGFMTP-F-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 339 LGG-DG-TlL~AAr~~~~~-~~PILGIN-------------lG~LGFLt~-~-~~edi~~~L~~il~G 388 (579)
+.+ || .++...+.. . .+||+-+. .|-.|||.. + +++++...|..++.+
T Consensus 68 ~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 68 VSDKNALSFVSRIKEK--HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp ECSTTHHHHHHHHHHH--STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EcCccHHHHHHHHHhc--CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 654 55 244555544 4 67888774 466777654 7 888888888888765
No 47
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=61.39 E-value=18 Score=33.04 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCccEEEEEeCchHHHH-------HHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVLW-------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~-------AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||-++... ....+...++||+||-+|.
T Consensus 36 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~PilGIC~G~ 78 (186)
T 2ywj_A 36 EGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCAGM 78 (186)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETHHH
T ss_pred ccCCEEEECCCCchhhhhhhhccCHHHHHHhcCCcEEEECHHH
Confidence 45799999999776542 1122225678999998874
No 48
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=61.07 E-value=19 Score=37.20 Aligned_cols=91 Identities=9% Similarity=0.079 Sum_probs=51.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+.+.-... ...++.+.|.+.-.+.+++-+.... .+..+.+... ...+.+ -..+.|+||.|||
T Consensus 34 ~~k~liVtd~~v~~~--~~~~v~~~L~~~~~~~~~~~~~ge~-----~k~~~~v~~~--~~~~~~~~~~r~d~iIalGG- 103 (368)
T 2gru_A 34 FDQYIMISDSGVPDS--IVHYAAEYFGKLAPVHILRFQGGEE-----YKTLSTVTNL--QERAIALGANRRTAIVAVGG- 103 (368)
T ss_dssp CSEEEEEEETTSCHH--HHHHHHHHHTTTSCEEEEEECCSGG-----GCSHHHHHHH--HHHHHHTTCCTTEEEEEEES-
T ss_pred CCEEEEEECCcHHHH--HHHHHHHHHHhccceeEEEeCCCCC-----CCCHHHHHHH--HHHHHhcCCCCCcEEEEECC-
Confidence 589999998765444 5788888886421232232111110 0000000000 001111 1245899999999
Q ss_pred hHHHHHHHhcC---CCCCcEEEEcC
Q 008048 343 GTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~---~~~~PILGINl 364 (579)
|.++.+++.++ ..++|++-|.+
T Consensus 104 Gsv~D~ak~~Aa~~~rgip~i~IPT 128 (368)
T 2gru_A 104 GLTGNVAGVAAGMMFRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 78898887665 35788888876
No 49
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=61.01 E-value=18 Score=36.84 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=51.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++++||+.+.-.. ....++.+.|.+ .++++.+-.... ++..+. -...+. ...++|+||.|||
T Consensus 34 ~~~~livtd~~~~~--~~~~~v~~~L~~-~g~~~~~~~~~~------~~~~~~------v~~~~~~~~~~~d~IIavGG- 97 (354)
T 3ce9_A 34 FKRVSLYFGEGIYE--LFGETIEKSIKS-SNIEIEAVETVK------NIDFDE------IGTNAFKIPAEVDALIGIGG- 97 (354)
T ss_dssp CSEEEEEEETTHHH--HHHHHHHHHHHT-TTCEEEEEEEEC------CCBHHH------HHHHHTTSCTTCCEEEEEES-
T ss_pred CCeEEEEECccHHH--HHHHHHHHHHHH-cCCeEEEEecCC------CCCHHH------HHHHHHhhhcCCCEEEEECC-
Confidence 36999999765433 356888888874 466553211000 000000 111211 1256899999999
Q ss_pred hHHHHHHHhcCC-CCCcEEEEcC
Q 008048 343 GTVLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~~-~~~PILGINl 364 (579)
|.++.+++.++- ..+|++-|.+
T Consensus 98 Gsv~D~aK~vA~~~~~p~i~IPT 120 (354)
T 3ce9_A 98 GKAIDAVKYMAFLRKLPFISVPT 120 (354)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEES
T ss_pred hHHHHHHHHHHhhcCCCEEEecC
Confidence 799988887652 4689998876
No 50
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=60.27 E-value=16 Score=33.81 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=44.9
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch--
Q 008048 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG-- 343 (579)
Q Consensus 266 ~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG-- 343 (579)
.|+||-+.+.- ...+.++|++ .|+.+.+-+.... . ..++.. .++|.+|.-||-|
T Consensus 3 mi~iid~~~s~-----~~~~~~~l~~-~G~~~~v~~~~~~-------------~---~~~~~~--~~~dglil~gG~~~~ 58 (195)
T 1qdl_B 3 LTLIIDNYDSF-----VYNIAQIVGE-LGSYPIVIRNDEI-------------S---IKGIER--IDPDRLIISPGPGTP 58 (195)
T ss_dssp EEEEEECSCSS-----HHHHHHHHHH-TTCEEEEEETTTS-------------C---HHHHHH--HCCSEEEECCCSSCT
T ss_pred EEEEEECCCch-----HHHHHHHHHh-CCCEEEEEeCCCC-------------C---HHHHhh--CCCCEEEECCCCCCh
Confidence 38888876654 2466778876 4666544221100 0 011111 1589898888843
Q ss_pred -------HHHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 -------TVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 -------TlL~AAr~~~~~~~PILGINlG~ 366 (579)
..+...+.+ ..++||+||-+|.
T Consensus 59 ~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~ 87 (195)
T 1qdl_B 59 EKREDIGVSLDVIKYL-GKRTPILGVCLGH 87 (195)
T ss_dssp TSHHHHTTHHHHHHHH-TTTSCEEEETHHH
T ss_pred hhhhhhhHHHHHHHHh-cCCCcEEEEehHH
Confidence 233555555 5679999999886
No 51
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=59.16 E-value=5.1 Score=47.17 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcc----------------cccc-----c
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYF----------------SFVQ-----T 319 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~----------------~~i~-----~ 319 (579)
..+++|+|++-- +.|..-...+-+++.+.. .|++||--.+=...+......+ +.+. .
T Consensus 208 ~~~krIaIlTSGGdaPGmNAaIRaVVr~a~~-~G~~V~Gi~~Gy~GLl~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~ 286 (989)
T 3opy_A 208 EGKKKIAIITSGGDAPGMNAAVRAVTRAGIF-YGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKE 286 (989)
T ss_dssp CCSEEEEEEECSSCCTTHHHHHHHHHHHHHH-TTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSS
T ss_pred ccCCEEEEEeeCCCchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhcCCCCCeEECCHHHHhhHHhCCCccccCCCCCc
Confidence 446899999975 456666667778887764 5788875332222222110000 0000 1
Q ss_pred ccchHHH----hh-hCCCccEEEEEeCchHHHHHHHhc----------C------------CCCCcEEEEcC-------C
Q 008048 320 WKDEKEI----LL-LHTKVDLVVTLGGDGTVLWAASIF----------K------------GPVPPIVPFSL-------G 365 (579)
Q Consensus 320 ~~~~~~~----~~-l~~~~DLVIvLGGDGTlL~AAr~~----------~------------~~~~PILGINl-------G 365 (579)
+...... .. ...++|.+|+||||||+-.|..+. . ...+||+||.- |
T Consensus 287 f~~~e~~~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 287 FRERWGRLQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred ccchhHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 1111111 11 125789999999999998776421 1 14689999953 3
Q ss_pred ---CCccCcCCCcchHHHHHHHHHcCCc
Q 008048 366 ---SLGFMTPFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 366 ---~LGFLt~~~~edi~~~L~~il~G~y 390 (579)
++||-|.+ +.+-++++++..--.
T Consensus 367 TD~TiGFdTAl--~~i~eaId~I~~TA~ 392 (989)
T 3opy_A 367 TDSTIGAYSSL--ERIIELVDYIDATAA 392 (989)
T ss_dssp CSCCEEHHHHH--HHHHHHHHHHHSSCC
T ss_pred CCCCCChhhHH--HHHHHHHHHHHhhhh
Confidence 67776654 345567777665433
No 52
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=57.98 E-value=5.6 Score=45.68 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcC-Ccc----------------cccc-----c
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES-SYF----------------SFVQ-----T 319 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~-~~~----------------~~i~-----~ 319 (579)
+.++|+|++-- +.|-.-...+-+++.+.. .+++||--.+=...+.... ..+ +.+. .
T Consensus 2 ~~krIgIltsGGdapGmNaaIravvr~a~~-~g~~V~Gi~~G~~GL~~~~~~~i~~l~~~~V~~i~~~GGTiLGTsR~~~ 80 (766)
T 3o8o_B 2 PQKAIAVMTSGGDAPGMNSNVRAIVRSAIF-KGCRAFVVMEGYEGLVRGGPEYIKEFHWEDVRGWSAEGGTNIGTARCME 80 (766)
T ss_dssp CCCEEEEEEESSCCTTHHHHHHHHHHHHHH-HTCEEEEETTHHHHHHSCSTTTEEEECGGGGTTGGGCCSCTTCCCCCSG
T ss_pred CCcEEEEEeeCCCchhHHHHHHHHHHHHHH-CCCEEEEEeCChHHHhcCCcccEEECCHHHHhhHHhCCCceeccCCCCc
Confidence 35799999875 456666666778777764 4677765222222222111 000 0000 1
Q ss_pred ccchHHHh----h-hCCCccEEEEEeCchHHHHHHHh-----------cC-----------CCCCcEEEEcC-------C
Q 008048 320 WKDEKEIL----L-LHTKVDLVVTLGGDGTVLWAASI-----------FK-----------GPVPPIVPFSL-------G 365 (579)
Q Consensus 320 ~~~~~~~~----~-l~~~~DLVIvLGGDGTlL~AAr~-----------~~-----------~~~~PILGINl-------G 365 (579)
+....... . ...++|.+|+||||||+-.|..+ .. ...+||+||.- |
T Consensus 81 ~~~~~~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 81 FKKREGRLLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp GGSHHHHHHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 11111111 0 12478999999999999877532 11 24789999953 3
Q ss_pred ---CCccCcCCCcchHHHHHHHHH
Q 008048 366 ---SLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 366 ---~LGFLt~~~~edi~~~L~~il 386 (579)
++||-|.+ +.+-+++++|.
T Consensus 161 TD~TiGfdTA~--~~i~eaid~i~ 182 (766)
T 3o8o_B 161 TDATIGAYSAL--DRICKAIDYVE 182 (766)
T ss_dssp CSCCBTHHHHH--HHHHHHHHHHH
T ss_pred CCCCCChhHHH--HHHHHHHHHHH
Confidence 67776654 33445555553
No 53
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=57.83 E-value=30 Score=33.85 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
....++|+|++.+.........+.+.+.+.+ .|+++........ .+-......+..++|.+.+ .
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~~--------------~~~~~~~~~l~~~~d~i~~-~ 200 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALKS--------------ADVQSATQAIAEKSDVIYA-L 200 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSSG--------------GGHHHHHHHHHTTCSEEEE-C
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCCh--------------HHHHHHHHhccCCeeEEEE-e
Confidence 3457899999999887766666666666664 6777643211100 0001223345567887764 5
Q ss_pred CchHHHHHHHhc----CCCCCcEEEEcC-----CCCccCcCCCcch----HHHHHHHHHcCC
Q 008048 341 GDGTVLWAASIF----KGPVPPIVPFSL-----GSLGFMTPFHSEH----YKDYLDSVLRGP 389 (579)
Q Consensus 341 GDGTlL~AAr~~----~~~~~PILGINl-----G~LGFLt~~~~ed----i~~~L~~il~G~ 389 (579)
.|+|++.+...+ ....+||+|... |-+|-+. .+..+ .-+...+||+|+
T Consensus 201 ~d~~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~G~l~~~~-~~~~~~G~~aa~~a~~IL~G~ 261 (302)
T 3lkv_A 201 IDNTVASAIEGMIVAANQAKTPVFGAATSYVERGAIASLG-FDYYQIGVQTADYVAAILEGK 261 (302)
T ss_dssp SCHHHHHTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEE-CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCcchhhHHHHHHHHHhhcCCceeecccccccCCceEEEe-cCHHHHHHHHHHHHHHHHCcC
Confidence 799988765433 246789999765 4333211 23333 235677889985
No 54
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=57.45 E-value=30 Score=34.02 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=42.3
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC--------------CCCccCcC---CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL--------------GSLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl--------------G~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++...+|++|+=||-||++-++. .++|++.+.. +..|.+.+ ++++.+.++|.++++.
T Consensus 293 ~ll~~ad~~v~~~G~~t~~Ea~~----~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~ 366 (402)
T 3ia7_A 293 SVLAHARACLTHGTTGAVLEAFA----AGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD 366 (402)
T ss_dssp HHHTTEEEEEECCCHHHHHHHHH----TTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCCHHHHHHHHH----hCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcC
Confidence 56677999999999999998774 3578886654 23555444 3677888888888764
No 55
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=57.43 E-value=17 Score=33.44 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL----------~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||-++.- ...+.+...+.||+||-.|.
T Consensus 37 ~~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~ 82 (196)
T 2nv0_A 37 NEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGL 82 (196)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH
T ss_pred hhCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHH
Confidence 3589999999977653 22233334678999998875
No 56
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=57.28 E-value=7.8 Score=38.44 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=47.8
Q ss_pred CEEEEEEcCC---ChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 265 QTVVILTKPN---SNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 265 k~V~IV~Kp~---~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
-+|+||.+.. ......+...+.....+ .+..|.+.......+... . ..++......+|.||.-||
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~-~~~~v~v~~~~~~~~~~~----------~-~~~~~~~~~~~dgiil~GG 76 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIA-LQVRLDILYVDSEELEGP----------N-ADEARKALLGCDGIFVPGG 76 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHH-HTCCEEEEEEEGGGGSST----------T-THHHHHHHHTCSEEEECCC
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHh-cCCceEEeccChhhcccc----------c-chhHHHHHhhCCEEEecCC
Confidence 5899998763 33555666666666553 233232211111111000 0 0001122346899999998
Q ss_pred chH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 342 DGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 342 DGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
=|. .+.+.+.+....+|||||-+|.
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 106 (273)
T 2w7t_A 77 FGNRGVDGKCAAAQVARMNNIPYFGVXLGM 106 (273)
T ss_dssp CTTTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred CCCcCchhHHHHHHHHHHCCCcEEEECcCH
Confidence 653 3344454444568999999885
No 57
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=56.93 E-value=47 Score=27.67 Aligned_cols=106 Identities=10% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhC-CCccEEEE-
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH-TKVDLVVT- 338 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~-~~~DLVIv- 338 (579)
..+..+|+||-. ++.. ...+..+|.+.+++.|..-.+..+.+.. . .. . ..+|+||+
T Consensus 17 ~~~~~~ilivdd--~~~~---~~~l~~~L~~~g~~~v~~~~~~~~~~~~----------~------~~-~~~~~dlvi~D 74 (146)
T 4dad_A 17 FQGMINILVASE--DASR---LAHLARLVGDAGRYRVTRTVGRAAQIVQ----------R------TD-GLDAFDILMID 74 (146)
T ss_dssp CGGGCEEEEECS--CHHH---HHHHHHHHHHHCSCEEEEECCCHHHHTT----------C------HH-HHTTCSEEEEE
T ss_pred cCCCCeEEEEeC--CHHH---HHHHHHHHhhCCCeEEEEeCCHHHHHHH----------H------Hh-cCCCCCEEEEe
Confidence 344678888853 3333 3455566665433776653332221110 0 00 1 45788887
Q ss_pred ---EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCC
Q 008048 339 ---LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 339 ---LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~ 389 (579)
-|.|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.+.
T Consensus 75 ~~l~~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 75 GAALDTAELAAIEKLSRL-HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp CTTCCHHHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCCCccHHHHHHHHHHh-CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 24455 344444443 2467887664 366677554 78889999999888764
No 58
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=56.66 E-value=84 Score=26.02 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=57.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh--CCCccEEEE---
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDLVVT--- 338 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l--~~~~DLVIv--- 338 (579)
..+|+||-. ++.. ...+..+|.+ .|+.|..-.+..+. +..+ ...+|+||+
T Consensus 5 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a-------------------~~~l~~~~~~dlvi~D~~ 59 (140)
T 3h5i_A 5 DKKILIVED--SKFQ---AKTIANILNK-YGYTVEIALTGEAA-------------------VEKVSGGWYPDLILMDIE 59 (140)
T ss_dssp -CEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESSHHHH-------------------HHHHHTTCCCSEEEEESS
T ss_pred CcEEEEEeC--CHHH---HHHHHHHHHH-cCCEEEEecChHHH-------------------HHHHhcCCCCCEEEEecc
Confidence 567888753 3333 4455666654 46776543222211 1111 145898887
Q ss_pred E--eCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHc
Q 008048 339 L--GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 339 L--GGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~ 387 (579)
+ |.|| .+++..+.. ..+||+-+. .|-.|||. +++++++...|..+++
T Consensus 60 l~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 60 LGEGMDGVQTALAIQQI--SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CSSSCCHHHHHHHHHHH--CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3 4777 355666654 467887764 35566755 4888888888888765
No 59
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.53 E-value=83 Score=29.40 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=64.6
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEE
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTL 339 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvL 339 (579)
.+.++||++... .++-...+...+.+.+.+ .|+.+.+-..-... ... ...+. -+..++|.||+.
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~ 68 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIER-LGGTAIALDAGRND-QTQ------------VSQIQTLIAQKPDAIIEQ 68 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHHCCSEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEEcCCCCH-HHH------------HHHHHHHHHcCCCEEEEe
Confidence 346789999874 555556677788888876 57777654211000 000 00011 123579999999
Q ss_pred eCchHHH-HHHHhcCCCCCcEEEEcCCCCccCcCCCcchH---HHHHHHHHc
Q 008048 340 GGDGTVL-WAASIFKGPVPPIVPFSLGSLGFMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 340 GGDGTlL-~AAr~~~~~~~PILGINlG~LGFLt~~~~edi---~~~L~~il~ 387 (579)
+.|.+.. ...+.+...++|++-++...-+.+.-+..++. ..+.+.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 69 LGNLDVLNPWLQKINDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp SSCHHHHHHHHHHHHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCChhhhHHHHHHHHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHH
Confidence 9986543 44555556789999998754333333444443 344555555
No 60
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=56.44 E-value=82 Score=25.83 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCC-eEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE---
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL--- 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~g-i~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL--- 339 (579)
+.+|+||-. ++.. ...+..+|.+ .| +.|..-.+..+.+. .. ....+|+||+=
T Consensus 14 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~~v~~~~~~~~a~~----------~l--------~~~~~dlvi~D~~l 69 (135)
T 3snk_A 14 RKQVALFSS--DPNF---KRDVATRLDA-LAIYDVRVSETDDFLKG----------PP--------ADTRPGIVILDLGG 69 (135)
T ss_dssp CEEEEEECS--CHHH---HHHHHHHHHH-TSSEEEEEECGGGGGGC----------CC--------TTCCCSEEEEEEET
T ss_pred CcEEEEEcC--CHHH---HHHHHHHHhh-cCCeEEEEeccHHHHHH----------HH--------hccCCCEEEEeCCC
Confidence 457888743 3333 4455666665 46 77664332222110 00 02357888772
Q ss_pred -eCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcC
Q 008048 340 -GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 340 -GGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G 388 (579)
|.|| .+++..+... ..+||+-+. .|-.+||.. ++++++...|..++.|
T Consensus 70 ~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 70 GDLLGKPGIVEARALW-ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp TGGGGSTTHHHHHGGG-TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CCchHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 5566 3555565543 367887763 366777654 7888888888887665
No 61
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=56.07 E-value=78 Score=30.19 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=63.0
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..++|++++.+.........+.+.+.+.+ .|+++.... +.. .. +.......+..++|.|++ +.|
T Consensus 132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~-~~~---~~----------~~~~~~~~l~~~~dai~~-~~D 195 (295)
T 3lft_A 132 NVKTIGALYSSSEDNSKTQVEEFKAYAEK-AGLTVETFA-VPS---TN----------EIASTVTVMTSKVDAIWV-PID 195 (295)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEE-ESS---GG----------GHHHHHHHHTTTCSEEEE-CSC
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHH-cCCEEEEEe-cCC---HH----------HHHHHHHHHHhcCCEEEE-CCc
Confidence 36899999988765555556667777765 477654221 100 00 001223344567897766 678
Q ss_pred hHHHHHHH---hc-CCCCCcEEEEcC---CCCccCcCCC--cchHH----HHHHHHHcCC
Q 008048 343 GTVLWAAS---IF-KGPVPPIVPFSL---GSLGFMTPFH--SEHYK----DYLDSVLRGP 389 (579)
Q Consensus 343 GTlL~AAr---~~-~~~~~PILGINl---G~LGFLt~~~--~edi~----~~L~~il~G~ 389 (579)
.+.+.+.+ .. ...++||+|+.- +. |-||.+. ..++- +.+-++++|+
T Consensus 196 ~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~-~~Lttv~~~~~~~G~~Aa~~l~~~l~g~ 254 (295)
T 3lft_A 196 NTIASGFPTVVSSNQSSKKPIYPSATAMVEV-GGLASVVIDQHDLGVATGKMIVQVLKGA 254 (295)
T ss_dssp HHHHHTHHHHHHHTTTTCCCEEESSHHHHTT-TCCEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHcCCCEEeCCHHHHhc-CcEEEEecCHHHHHHHHHHHHHHHHCcC
Confidence 88775433 22 356899999963 22 4456543 23322 3455667774
No 62
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=55.99 E-value=41 Score=35.13 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=50.9
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE--EccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY--VEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 341 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~--ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGG 341 (579)
++++||+.+.-. +++.++.+.|.+ .++++. +-+.... .+....+... ...+. .-..+.|+||.|||
T Consensus 44 ~rvlIVtd~~v~---~~~~~v~~~L~~-~g~~~~~~~~~~gE~-----~kt~~~v~~~--~~~l~~~~~~r~d~IIavGG 112 (368)
T 3qbe_A 44 HKVAVVHQPGLA---ETAEEIRKRLAG-KGVDAHRIEIPDAEA-----GKDLPVVGFI--WEVLGRIGIGRKDALVSLGG 112 (368)
T ss_dssp SEEEEEECGGGH---HHHHHHHHHHHH-TTCEEEEEECCSGGG-----GGBHHHHHHH--HHHHHHHTCCTTCEEEEEES
T ss_pred CEEEEEECccHH---HHHHHHHHHHHh-cCCcceEEEeCCCCC-----CCCHHHHHHH--HHHHHHcCCCCCcEEEEECC
Confidence 799999976643 347889999976 466642 2121110 0000000000 00111 11346799999999
Q ss_pred chHHHHHHHhcC---CCCCcEEEEcC
Q 008048 342 DGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 342 DGTlL~AAr~~~---~~~~PILGINl 364 (579)
|.++.+++.++ ..++|++-|.+
T Consensus 113 -Gsv~D~ak~~Aa~~~rgip~i~IPT 137 (368)
T 3qbe_A 113 -GAATDVAGFAAATWLRGVSIVHLPT 137 (368)
T ss_dssp -HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred -hHHHHHHHHHHHHhccCCcEEEECC
Confidence 78888887664 24688887765
No 63
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=55.17 E-value=87 Score=26.25 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=40.7
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCceE
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPISI 392 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y~I 392 (579)
.+|+||+ -|+|| .+++..+.. ...+||+-+. .|-.|||.. ++++++..+|..++.|.-.+
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRSY-ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 4788887 35566 355555554 3567887664 477888654 78899999999999886544
Q ss_pred E
Q 008048 393 T 393 (579)
Q Consensus 393 e 393 (579)
.
T Consensus 140 ~ 140 (152)
T 3eul_A 140 A 140 (152)
T ss_dssp -
T ss_pred C
Confidence 3
No 64
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=54.27 E-value=12 Score=38.40 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=44.1
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCch
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGDG 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGDG 343 (579)
++++||+.+.-.. ....++.+.| +.+.+.+++-+.... .+..+.+... .....+ -.++.|+||.||| |
T Consensus 32 ~~~liVtd~~~~~--~~~~~v~~~L-~~g~~~~~~~~~~e~-----~p~~~~v~~~--~~~~~~~~~~r~d~iIavGG-G 100 (354)
T 1xah_A 32 DQSFLLIDEYVNQ--YFANKFDDIL-SYENVHKVIIPAGEK-----TKTFEQYQET--LEYILSHHVTRNTAIIAVGG-G 100 (354)
T ss_dssp SCEEEEEEHHHHH--HHHHHHC-------CEEEEEECSGGG-----GCSHHHHHHH--HHHHHTTCCCTTCEEEEEES-H
T ss_pred CeEEEEECCcHHH--HHHHHHHHHH-hcCCeEEEEECCCCC-----CCCHHHHHHH--HHHHHHcCCCCCceEEEECC-h
Confidence 6899998643222 2567777778 532254433222111 0000000000 000111 1223399999999 7
Q ss_pred HHHHHHHhcC---CCCCcEEEEcC
Q 008048 344 TVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 344 TlL~AAr~~~---~~~~PILGINl 364 (579)
.++-+++.++ ...+|++-|.+
T Consensus 101 sv~D~ak~vA~~~~rgip~i~IPT 124 (354)
T 1xah_A 101 ATGDFAGFVAATLLRGVHFIQVPT 124 (354)
T ss_dssp HHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEECC
Confidence 8888887665 46789988876
No 65
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=53.44 E-value=27 Score=30.14 Aligned_cols=94 Identities=11% Similarity=0.147 Sum_probs=58.9
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
..++++|+++.-.+-....-++.++-+.+.+ .|+++-++..-..+ +.....++|+||+--
T Consensus 18 ~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~-~gi~~~V~~~~~~~-------------------~~~~~~~~DlIist~ 77 (113)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE-------------------IETYMDGVHLICTTA 77 (113)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHH-TTCCEEEEEECTTT-------------------TTTSTTSCSEEEESS
T ss_pred cccccEEEEECCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEecHHH-------------------HhhccCCCCEEEECC
Confidence 3457899999998877666678889999976 56765444311110 111234689887622
Q ss_pred CchHHHHHHHhcCCC-CCcEEEEcCCCCccCcCCCcchHHHHHHHHHc
Q 008048 341 GDGTVLWAASIFKGP-VPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLR 387 (579)
Q Consensus 341 GDGTlL~AAr~~~~~-~~PILGINlG~LGFLt~~~~edi~~~L~~il~ 387 (579)
+ .-... ++|++-+ ..|++..+.+.+.+.+..+++
T Consensus 78 -~--------l~~~~~~ipvi~v----~~~l~~~d~~~i~~~i~~~l~ 112 (113)
T 1tvm_A 78 -R--------VDRSFGDIPLVHG----MPFVSGVGIEALQNKILTILQ 112 (113)
T ss_dssp -C--------CCCCSTTCCEECC----HHHHHSSSHHHHHHHHHHHHH
T ss_pred -c--------cccccCCCCEEEE----eeccccCCHHHHHHHHHHHHh
Confidence 1 10223 5787654 278888888888877777654
No 66
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=52.74 E-value=35 Score=31.18 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=46.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC-----
Q 008048 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG----- 341 (579)
Q Consensus 267 V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG----- 341 (579)
|+|+-....- ...+.++|++ .|..+.+-+... ...++.. .++|.||.-||
T Consensus 3 i~iid~~~~~-----~~~~~~~l~~-~G~~~~~~~~~~-----------------~~~~~~~--~~~dglil~Gg~~~~~ 57 (189)
T 1wl8_A 3 IVIMDNGGQY-----VHRIWRTLRY-LGVETKIIPNTT-----------------PLEEIKA--MNPKGIIFSGGPSLEN 57 (189)
T ss_dssp EEEEECSCTT-----HHHHHHHHHH-TTCEEEEEETTC-----------------CHHHHHH--TCCSEEEECCCSCTTC
T ss_pred EEEEECCCch-----HHHHHHHHHH-CCCeEEEEECCC-----------------ChHHhcc--cCCCEEEECCCCChhh
Confidence 7777665543 3467778876 466554422100 0011111 45899999999
Q ss_pred chHHHHHHHhcCCCCCcEEEEcCCC
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINlG~ 366 (579)
+|.++...+.+...++||+||-+|.
T Consensus 58 ~~~~~~~i~~~~~~~~PilGIC~G~ 82 (189)
T 1wl8_A 58 TGNCEKVLEHYDEFNVPILGICLGH 82 (189)
T ss_dssp CTTHHHHHHTGGGTCSCEEEETHHH
T ss_pred hhhHHHHHHHHhhCCCeEEEEcHHH
Confidence 3555666776645679999999886
No 67
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=52.55 E-value=14 Score=37.92 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=49.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++++||+.+.-. ..+..++.+.|.+ .++++.+.. .. .+. ..+.+... .... ...++|+||.||| |.
T Consensus 32 ~~~livtd~~~~--~~~~~~v~~~L~~-~g~~~~~~~-~~----ge~-~~~~v~~~--~~~~--~~~~~d~IIavGG-Gs 97 (370)
T 1jq5_A 32 NKTVVIADEIVW--KIAGHTIVNELKK-GNIAAEEVV-FS----GEA-SRNEVERI--ANIA--RKAEAAIVIGVGG-GK 97 (370)
T ss_dssp SEEEEEECHHHH--HHTHHHHHHHHHT-TTCEEEEEE-CC----SSC-BHHHHHHH--HHHH--HHTTCSEEEEEES-HH
T ss_pred CeEEEEEChHHH--HHHHHHHHHHHHH-cCCeEEEEe-eC----CCC-CHHHHHHH--HHHH--HhcCCCEEEEeCC-hH
Confidence 799999965332 2357888888864 577652110 00 000 00001000 0011 1246899999999 79
Q ss_pred HHHHHHhcCC-CCCcEEEEcC
Q 008048 345 VLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 345 lL~AAr~~~~-~~~PILGINl 364 (579)
++.+++.++- ..+|++-|.+
T Consensus 98 v~D~aK~iA~~~~~p~i~IPT 118 (370)
T 1jq5_A 98 TLDTAKAVADELDAYIVIVPT 118 (370)
T ss_dssp HHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEecc
Confidence 9988887652 3678888876
No 68
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=52.52 E-value=14 Score=34.54 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=25.1
Q ss_pred CccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEcCCC
Q 008048 332 KVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 332 ~~DLVIvLGGDGTlL----------~AAr~~~~~~~PILGINlG~ 366 (579)
++|.||.-||..+.. ...+.+...++||+||-.|.
T Consensus 57 ~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 101 (208)
T 2iss_D 57 MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGV 101 (208)
T ss_dssp GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH
T ss_pred hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHH
Confidence 589999999986653 23344434678999998874
No 69
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=51.39 E-value=1.1e+02 Score=25.67 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCce
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y~ 391 (579)
..+|+||+ -++|| .+++..+.. ...+||+-+. .|-.|||. +++++++...|..++.|.-.
T Consensus 65 ~~~dlii~D~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 65 ESVDIAILDVEMPVKTGLEVLEWIRSE-KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp SCCSEEEECSSCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 45788887 35566 345555553 3567887774 37778755 48899999999999998644
No 70
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=50.80 E-value=18 Score=33.46 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCccEEEEEe-Cch-H---------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLG-GDG-T---------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLG-GDG-T---------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-| ||- + ++...+.+...++||+||-.|.
T Consensus 39 ~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~ 85 (200)
T 1ka9_H 39 EEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGM 85 (200)
T ss_dssp SSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHH
T ss_pred ccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHH
Confidence 4689888877 552 3 3444454445678999998874
No 71
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=50.49 E-value=5.2 Score=38.75 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=46.2
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
-+|+|+-+...... .-+.++|.. .|+.+.+-+.... + . +......+|.||.-||-++
T Consensus 13 ~~~~~i~~~~~~~~----~~i~~~l~~-~G~~v~v~~~~~~----~--~------------~~~~l~~~Dglil~GG~~~ 69 (239)
T 1o1y_A 13 VRVLAIRHVEIEDL----GMMEDIFRE-KNWSFDYLDTPKG----E--K------------LERPLEEYSLVVLLGGYMG 69 (239)
T ss_dssp CEEEEECSSTTSSC----THHHHHHHH-TTCEEEEECGGGT----C--C------------CSSCGGGCSEEEECCCSCC
T ss_pred eEEEEEECCCCCCc----hHHHHHHHh-CCCcEEEeCCcCc----c--c------------cccchhcCCEEEECCCCcc
Confidence 47888877544332 346677765 5777764321100 0 0 0111246899999997643
Q ss_pred ------------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 345 ------------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 345 ------------lL~AAr~~~~~~~PILGINlG~ 366 (579)
++...+.+...++|||||-+|.
T Consensus 70 ~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~ 103 (239)
T 1o1y_A 70 AYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS 103 (239)
T ss_dssp TTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred ccCCccChhHHHHHHHHHHHHHCCCCEEEEchhH
Confidence 3344454444568999999886
No 72
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=50.46 E-value=40 Score=34.47 Aligned_cols=87 Identities=9% Similarity=0.020 Sum_probs=48.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHH-hhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI-LLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~-~~l~~~~DLVIvLGGD 342 (579)
.++++||+.+.-. . +..++.+.|. .++.+.++..... +..+.+... .... +.-..+.|+||.|||
T Consensus 28 ~~kvliVtd~~v~--~-~~~~v~~~L~--~~~~~~~~~ge~~------~~~~~v~~~--~~~~~~~~~~r~d~IIavGG- 93 (348)
T 1ujn_A 28 AGPAALLFDRRVE--G-FAQEVAKALG--VRHLLGLPGGEAA------KSLEVYGKV--LSWLAEKGLPRNATLLVVGG- 93 (348)
T ss_dssp SSCEEEEEEGGGH--H-HHHHHHHHHT--CCCEEEECCSGGG------SSHHHHHHH--HHHHHHHTCCTTCEEEEEES-
T ss_pred CCEEEEEECCcHH--H-HHHHHHHHhc--cCeEEEECCCCCC------CCHHHHHHH--HHHHHHcCCCCCCEEEEECC-
Confidence 4789999975432 2 6778888885 3455333221100 000000000 0001 111345699999999
Q ss_pred hHHHHHHHhcC---CCCCcEEEEcC
Q 008048 343 GTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 343 GTlL~AAr~~~---~~~~PILGINl 364 (579)
|.++.+++.++ ...+|++-|.+
T Consensus 94 Gsv~D~ak~~A~~~~rgip~i~IPT 118 (348)
T 1ujn_A 94 GTLTDLGGFVAATYLRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred cHHHHHHHHHHHHhccCCCEEEecC
Confidence 78888887765 45789888876
No 73
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=50.44 E-value=13 Score=37.04 Aligned_cols=59 Identities=24% Similarity=0.297 Sum_probs=41.8
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcCC---CcchHHHHHHHHHcC
Q 008048 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTPF---HSEHYKDYLDSVLRG 388 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~~---~~edi~~~L~~il~G 388 (579)
..++...+|++|+=||=||++-++. .++|++.+.. +..|++.+. +++.+.++|.++++.
T Consensus 294 ~~~ll~~ad~~v~~gG~~t~~Ea~~----~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 368 (398)
T 4fzr_A 294 LSAIMPACDVVVHHGGHGTTLTCLS----EGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 368 (398)
T ss_dssp HHHHGGGCSEEEECCCHHHHHHHHH----TTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHC
T ss_pred HHHHHhhCCEEEecCCHHHHHHHHH----hCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 3456677999999999999988774 4679998754 236766543 577888888888864
No 74
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=50.42 E-value=12 Score=37.16 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=43.8
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC-------------CCccCcC---CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG-------------~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++...+|++|+=||=||++-++. .++|++.+..+ ..|++.+ ++++++.++|.++++.
T Consensus 275 ~~l~~~d~~v~~~G~~t~~Ea~~----~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 275 VVAPTCDLLVHHAGGVSTLTGLS----AGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp HHGGGCSEEEECSCTTHHHHHHH----TTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEeCCcHHHHHHHHH----hCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 45678999999999999988875 46799998652 3566554 4678888999888864
No 75
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=50.02 E-value=7.1 Score=37.05 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=54.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc-
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD- 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD- 342 (579)
|++|+|+.-++-... + +...+..|.+..++++.+-..... +.. ..... + ..+..+.+...++|+||+.||.
T Consensus 3 m~kV~ill~~g~~~~-E-~~~~~~~l~~~~~~~v~~vs~~~~-V~~-~~G~~-v---~~d~~l~~~~~~~D~livpGG~~ 74 (206)
T 3f5d_A 3 LKKALFLILDQYADW-E-GVYLASALNQREDWSVHTVSLDPI-VSS-IGGFK-T---SVDYIIGLEPANFNLLVMIGGDS 74 (206)
T ss_dssp CEEEEEECCSSBCTT-T-SHHHHHHHHTSTTEEEEEEESSSE-EEB-TTSCE-E---ECSEETTSSCSCCSEEEECCBSC
T ss_pred ccEEEEEEcCCCcHH-H-HHHHHHHHhccCCeEEEEEECCCC-EEe-cCCcE-E---ecCcChhhCCcCCCEEEEcCCCC
Confidence 678999987654432 2 224556666544677654211111 111 01111 1 1111122333578999999995
Q ss_pred -----hHHHHHHHhcCCCCCcEEEEcCCC
Q 008048 343 -----GTVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 -----GTlL~AAr~~~~~~~PILGINlG~ 366 (579)
..++...+.+.....||.+|-.|.
T Consensus 75 ~~~~~~~l~~~l~~~~~~gk~iaaiC~G~ 103 (206)
T 3f5d_A 75 WSNDNKKLLHFVKTAFQKNIPIAAICGAV 103 (206)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred hhhcCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 467888887777888999998876
No 76
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=49.70 E-value=18 Score=35.61 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=52.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc-
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD- 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD- 342 (579)
+++|+|+.-++-... ++ .-.++.|....+++|.+-......+... .... +. .+..+.+....+|+||+-||.
T Consensus 23 ~~~I~ill~~gf~~~-e~-~~p~dvl~~~~~~~v~~vs~~~~~V~~~-~G~~-i~---~d~~l~~~~~~yD~liVPGG~~ 95 (253)
T 3ewn_A 23 DEQIAMLVYPGMTVM-DL-VGPHCMFGSLMGAKIYIVAKSLDPVTSD-AGLA-IV---PTATFGTCPRDLTVLFAPGGTD 95 (253)
T ss_dssp CCEEEEECCTTBCHH-HH-HHHHHHHTTSTTCEEEEEESSSSCEECT-TSCE-EC---CSEETTTSCSSCSEEEECCBSH
T ss_pred CeEEEEEeCCCCcHH-HH-HHHHHHHHhCCCCEEEEEeCCCCeEEcC-CCCE-Ee---CCcCHHHcCCCCCEEEECCCcc
Confidence 378999988765432 32 3355566334567665421111111100 0111 10 111122333457999999998
Q ss_pred hH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 343 GT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
|+ ++...+.+.....+|.+|-.|.
T Consensus 96 g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~ 127 (253)
T 3ewn_A 96 GTLAAASDAETLAFMADRGARAKYITSVCSGS 127 (253)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred chhhhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 75 4455666667788999998886
No 77
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=49.42 E-value=18 Score=40.03 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.6
Q ss_pred CCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 330 HTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 330 ~~~~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
...+|.||+-||=|+ ++.+++.+...++|+|||-+|.
T Consensus 348 L~~~DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIClG~ 389 (535)
T 3nva_A 348 LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGF 389 (535)
T ss_dssp TTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred ccCCCEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEECcch
Confidence 567999999998663 3455565555678999998863
No 78
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=48.27 E-value=1.1e+02 Score=24.88 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE----
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL---- 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL---- 339 (579)
+.+|+||-. ++.. ...+...|.+ .++.|..-.+....+ ..+. ...+|+||+=
T Consensus 3 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~----------------~~l~--~~~~dlvi~d~~~~ 58 (140)
T 2qr3_A 3 LGTIIIVDD--NKGV---LTAVQLLLKN-HFSKVITLSSPVSLS----------------TVLR--EENPEVVLLDMNFT 58 (140)
T ss_dssp CCEEEEECS--CHHH---HHHHHHHHTT-TSSEEEEECCHHHHH----------------HHHH--HSCEEEEEEETTTT
T ss_pred CceEEEEeC--CHHH---HHHHHHHHHh-CCcEEEEeCCHHHHH----------------HHHH--cCCCCEEEEeCCcC
Confidence 467888753 3332 4455566654 467765433222111 0011 1347888873
Q ss_pred -----eCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCc
Q 008048 340 -----GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 340 -----GGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y 390 (579)
+.||. +++..+.. ...+||+-+. .|-.|||. +++++++...|..++.+..
T Consensus 59 ~~~~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 59 SGINNGNEGLFWLHEIKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp C-----CCHHHHHHHHHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCCCCCccHHHHHHHHHhh-CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 55663 45555544 3567888773 47788855 4888999999999988754
No 79
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=48.17 E-value=1.1e+02 Score=24.74 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE----E
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----L 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv----L 339 (579)
+++|+||-. ++.. ...+.++|.+ .|..+..-.+..+.+. .+ ....+|+||+ -
T Consensus 7 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l--~~~~~dlvi~d~~l~ 62 (130)
T 3eod_A 7 GKQILIVED--EQVF---RSLLDSWFSS-LGATTVLAADGVDALE----------------LL--GGFTPDLMICDIAMP 62 (130)
T ss_dssp TCEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESCHHHHHH----------------HH--TTCCCSEEEECCC--
T ss_pred CCeEEEEeC--CHHH---HHHHHHHHHh-CCceEEEeCCHHHHHH----------------HH--hcCCCCEEEEecCCC
Confidence 568888853 3333 3455566664 4666654322221110 01 1234788887 3
Q ss_pred eCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CC-CcchHHHHHHHHHcCC
Q 008048 340 GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PF-HSEHYKDYLDSVLRGP 389 (579)
Q Consensus 340 GGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~-~~edi~~~L~~il~G~ 389 (579)
|+|| .+++..+.. ...+||+-+. .|-.|||. ++ +++++...|..++.+.
T Consensus 63 ~~~g~~~~~~l~~~-~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 63 RMNGLKLLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp ---CHHHHHHHHHT-TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 5566 355555553 3467887764 37777765 47 7888999999888764
No 80
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=48.06 E-value=71 Score=29.18 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=41.9
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCce
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y~ 391 (579)
.+|+||+ -|+|| .+++..+......+||+-+. .|--|||.. ++++++...|..++.|...
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEe
Confidence 4788887 37788 35555554123567887663 466778654 8899999999999998643
No 81
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=47.86 E-value=1.2e+02 Score=25.01 Aligned_cols=58 Identities=12% Similarity=0.286 Sum_probs=40.1
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCC
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~ 389 (579)
..+|+||+ -|+|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++++.
T Consensus 48 ~~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGMDILREIKKI-TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp TTCCEEEEESCCSSSCHHHHHHHHHHH-CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 46888887 35667 355555554 3567887664 477788654 88899999999888753
No 82
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=47.08 E-value=22 Score=35.48 Aligned_cols=33 Identities=12% Similarity=-0.021 Sum_probs=25.1
Q ss_pred HhhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEc
Q 008048 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFS 363 (579)
Q Consensus 326 ~~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGIN 363 (579)
+.++...+|++|+-|| +|+.-++. .++|.+-|.
T Consensus 219 m~~~m~~aDlvI~~gG-~T~~E~~~----~g~P~i~ip 251 (282)
T 3hbm_A 219 IAKLMNESNKLIISAS-SLVNEALL----LKANFKAIC 251 (282)
T ss_dssp HHHHHHTEEEEEEESS-HHHHHHHH----TTCCEEEEC
T ss_pred HHHHHHHCCEEEECCc-HHHHHHHH----cCCCEEEEe
Confidence 3445678999999999 89887764 356888775
No 83
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=46.86 E-value=27 Score=36.66 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=47.8
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch-
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG- 343 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG- 343 (579)
.+|+++---.+ ..++++|.+ .|+.+.+-+... +..++. ..++|.||.-||-|
T Consensus 191 ~~V~viD~G~k-------~ni~r~L~~-~G~~v~vvp~~~-----------------~~e~i~--~~~~DGliLsGGPgd 243 (379)
T 1a9x_B 191 FHVVAYDFGAK-------RNILRMLVD-RGCRLTIVPAQT-----------------SAEDVL--KMNPDGIFLSNGPGD 243 (379)
T ss_dssp EEEEEEESSCC-------HHHHHHHHH-TTEEEEEEETTC-----------------CHHHHH--TTCCSEEEECCCSBC
T ss_pred CEEEEEECCCh-------HHHHHHHHH-CCCEEEEEeccC-----------------CHHHHh--hcCCCEEEEeCCCCC
Confidence 47887766332 347888876 477665533210 011121 23689999999943
Q ss_pred -----HHHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 -----TVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 -----TlL~AAr~~~~~~~PILGINlG~ 366 (579)
..+...+.+...++|||||-+|.
T Consensus 244 p~~~~~~~~~Ir~~~~~~~PILGIClG~ 271 (379)
T 1a9x_B 244 PAPCDYAITAIQKFLETDIPVFGICLGH 271 (379)
T ss_dssp STTCHHHHHHHHHHTTSCCCEEEETHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEECchH
Confidence 34566677766789999999997
No 84
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=46.47 E-value=50 Score=31.78 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
..++|++++.+.........+.+.+.+.+ .|+++.... +.. .. ........+..++|.|++ ..|
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~-~~~---~~----------~~~~~~~~l~~~~dai~~-~~D 202 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEAT-ALK---SA----------DVQSATQAIAEKSDVIYA-LID 202 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEE-CSS---GG----------GHHHHHHHHGGGCSEEEE-CSC
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHH-cCCEEEEEe-cCC---hH----------HHHHHHHHHhccCCEEEE-CCc
Confidence 47899999988765555556666777765 477754221 100 00 001123334457887766 688
Q ss_pred hHHHHHHHhc----CCCCCcEEEEcC---CCCccCcCCC--cchHH----HHHHHHHcCC
Q 008048 343 GTVLWAASIF----KGPVPPIVPFSL---GSLGFMTPFH--SEHYK----DYLDSVLRGP 389 (579)
Q Consensus 343 GTlL~AAr~~----~~~~~PILGINl---G~LGFLt~~~--~edi~----~~L~~il~G~ 389 (579)
.+.+.+.+.+ ...++||+|++- +. |-||.+. ..++- +.|-++++|+
T Consensus 203 ~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~-~~Lttv~~~~~~~G~~Aa~~l~~~l~g~ 261 (302)
T 2qh8_A 203 NTVASAIEGMIVAANQAKTPVFGAATSYVER-GAIASLGFDYYQIGVQTADYVAAILEGK 261 (302)
T ss_dssp HHHHTTHHHHHHHHHHTTCCEEESSHHHHHT-TCSEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHcCCCEEECCHHHHhC-CcEEEEeCCHHHHHHHHHHHHHHHHCcC
Confidence 8876543221 136799999863 23 5566653 23322 3456667774
No 85
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=46.01 E-value=1.2e+02 Score=24.82 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE----
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL---- 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL---- 339 (579)
+.+|+||-. ++.. ...+...|.+ .|+.|..-.+..+.+. .. ....+|+||+=
T Consensus 6 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------~l--------~~~~~dlvi~D~~l~ 61 (136)
T 3kto_A 6 HPIIYLVDH--QKDA---RAALSKLLSP-LDVTIQCFASAESFMR----------QQ--------ISDDAIGMIIEAHLE 61 (136)
T ss_dssp -CEEEEECS--CHHH---HHHHHHHHTT-SSSEEEEESSHHHHTT----------SC--------CCTTEEEEEEETTGG
T ss_pred CCeEEEEcC--CHHH---HHHHHHHHHH-CCcEEEEeCCHHHHHH----------HH--------hccCCCEEEEeCcCC
Confidence 457888743 3333 3455566654 4777664332222110 00 01347888872
Q ss_pred e--Cch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCc
Q 008048 340 G--GDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 340 G--GDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y 390 (579)
| .|| .+++..+.. ...+||+-+. .|-.+||. +++++++...|.++..|..
T Consensus 62 ~~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 62 DKKDSGIELLETLVKR-GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp GBTTHHHHHHHHHHHT-TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHhC-CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 3 466 344555554 3567888764 47778865 4889999999999887644
No 86
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=45.71 E-value=40 Score=33.65 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=41.4
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC---CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++...+|++|+-||=||++-++. .++|++.+.. ...|.+.+ ++++++.++|.++++.
T Consensus 309 ~ll~~ad~~v~~~G~~t~~Ea~~----~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 381 (415)
T 3rsc_A 309 KVLEQATVCVTHGGMGTLMEALY----WGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD 381 (415)
T ss_dssp HHHHHEEEEEESCCHHHHHHHHH----TTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTC
T ss_pred HHHhhCCEEEECCcHHHHHHHHH----hCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcC
Confidence 44566999999999999998774 3578888643 13454433 4678888888888864
No 87
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=45.19 E-value=21 Score=35.37 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=44.1
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC-----CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP-----FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~-----~~~edi~~~L~~il~G 388 (579)
++...+|++|+=||=||++-++. .++|++.+.. +..|++.+ .+++.+.++|.++++.
T Consensus 282 ~ll~~ad~~v~~~G~~t~~Ea~~----~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~ 356 (391)
T 3tsa_A 282 LFLRTCELVICAGGSGTAFTATR----LGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGD 356 (391)
T ss_dssp GTGGGCSEEEECCCHHHHHHHHH----TTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTC
T ss_pred HHHhhCCEEEeCCCHHHHHHHHH----hCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcC
Confidence 45578999999999999988874 4679988754 33677654 4678899999998865
No 88
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=44.37 E-value=10 Score=38.39 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=46.5
Q ss_pred EEEEEEcCCChhH------HHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE
Q 008048 266 TVVILTKPNSNSV------QILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL 339 (579)
Q Consensus 266 ~V~IV~Kp~~~~~------~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL 339 (579)
.|||......... ..+...++++|.+. |..+.+-+... +...+..+...+|.||.-
T Consensus 32 ~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~~~~vv~~~~-----------------~~~~i~~~l~~~dglil~ 93 (315)
T 1l9x_A 32 IIGILMQKCRNKVMKNYGRYYIAASYVKYLESA-GARVVPVRLDL-----------------TEKDYEILFKSINGILFP 93 (315)
T ss_dssp EEEEECEECCSHHHHTTCSEEEEHHHHHHHHHT-TCEEEEECSSC-----------------CHHHHHHHHHHSSEEEEC
T ss_pred EEEEECCcccccccccCcceehHHHHHHHHHHC-CCEEEEEecCC-----------------CHHHHHHHHhcCCEEEEe
Confidence 7999976543220 01233567888764 55544322100 011233334568999999
Q ss_pred eCchH------------HHHHHHhcCCC--CCcEEEEcCCC
Q 008048 340 GGDGT------------VLWAASIFKGP--VPPIVPFSLGS 366 (579)
Q Consensus 340 GGDGT------------lL~AAr~~~~~--~~PILGINlG~ 366 (579)
||-|. ++..++.+... .+|||||-+|.
T Consensus 94 GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 94 GGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred CCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 99543 45555544222 58999999886
No 89
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=43.80 E-value=1e+02 Score=25.06 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=38.5
Q ss_pred CccEEEEE-----eCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 332 KVDLVVTL-----GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 332 ~~DLVIvL-----GGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
.+|+||+= |.||. +++..+.. ..+||+-+. .|-.+||. +++++++...|..++++.
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAG--CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHH--SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 47888873 35763 55655554 567887763 36677755 478888888888887653
No 90
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=43.71 E-value=44 Score=30.48 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=51.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchh-HhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVR-AELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va-~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
+++|+|+.-++-... ++ ...++.|+. .++++.+-.... ..+.. ..... +. .+..+.+. ..++|+||+.||
T Consensus 5 ~kkv~ill~~g~~~~-e~-~~~~~~l~~-ag~~v~~~s~~~~~~v~~-~~g~~-i~---~d~~l~~~~~~~~D~livpGG 76 (190)
T 4e08_A 5 SKSALVILAPGAEEM-EF-IIAADVLRR-AGIKVTVAGLNGGEAVKC-SRDVQ-IL---PDTSLAQVASDKFDVVVLPGG 76 (190)
T ss_dssp CCEEEEEECTTCCHH-HH-HHHHHHHHH-TTCEEEEEESSSSSCEEC-TTSCE-EE---CSEETGGGTTCCCSEEEECCC
T ss_pred CcEEEEEECCCchHH-HH-HHHHHHHHH-CCCEEEEEECCCCcceec-CCCcE-EE---CCCCHHHCCcccCCEEEECCC
Confidence 368999887655432 32 345566664 466665421111 11100 00000 10 01112222 246899999999
Q ss_pred c-hH--------HHHHHHhcCCCCCcEEEEcCCCC
Q 008048 342 D-GT--------VLWAASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 342 D-GT--------lL~AAr~~~~~~~PILGINlG~L 367 (579)
. |+ ++...+.+.....||.+|-.|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~ 111 (190)
T 4e08_A 77 LGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT 111 (190)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHH
T ss_pred ChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHH
Confidence 5 32 34455666667889999998873
No 91
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=42.57 E-value=13 Score=34.71 Aligned_cols=101 Identities=11% Similarity=0.017 Sum_probs=52.7
Q ss_pred eecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEE
Q 008048 258 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLV 336 (579)
Q Consensus 258 l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLV 336 (579)
+.|.+..+.|+|+.-.+-++. ++ -...+.|++ .|++|.+-.......... .... +. .+..+++. ..++|.|
T Consensus 2 ~~m~~t~~~v~il~~~gFe~~-E~-~~p~~~l~~-ag~~V~~~s~~~~~v~~~-~G~~-v~---~d~~l~~v~~~~yD~l 73 (177)
T 4hcj_A 2 NAMGKTNNILYVMSGQNFQDE-EY-FESKKIFES-AGYKTKVSSTFIGTAQGK-LGGM-TN---IDLLFSEVDAVEFDAV 73 (177)
T ss_dssp ---CCCCEEEEECCSEEECHH-HH-HHHHHHHHH-TTCEEEEEESSSEEEEET-TSCE-EE---ECEEGGGCCGGGCSEE
T ss_pred CccccCCCEEEEECCCCccHH-HH-HHHHHHHHH-CCCEEEEEECCCCeEeeC-CCCE-Ee---cCccHHHCCHhHCCEE
Confidence 455555666777765443332 22 335556665 577776522111111000 0000 00 01112222 3568999
Q ss_pred EEEeCchH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 337 VTLGGDGT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 337 IvLGGDGT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
|+-||-|+ ++...+.+...+.||.+|-.|.
T Consensus 74 iiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~ 111 (177)
T 4hcj_A 74 VFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGV 111 (177)
T ss_dssp EECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred EECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccH
Confidence 99999774 6667777777788999997764
No 92
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=42.54 E-value=1.4e+02 Score=24.41 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=58.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE----E
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----L 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv----L 339 (579)
+.+|+||-. ++.. ...+..+|.+ .|+.|..-.+..+.+. .+. ...+|+||+ -
T Consensus 6 ~~~iLivdd--~~~~---~~~l~~~l~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlvi~d~~l~ 61 (140)
T 3grc_A 6 RPRILICED--DPDI---ARLLNLMLEK-GGFDSDMVHSAAQALE----------------QVA--RRPYAAMTVDLNLP 61 (140)
T ss_dssp CSEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEECSHHHHHH----------------HHH--HSCCSEEEECSCCS
T ss_pred CCCEEEEcC--CHHH---HHHHHHHHHH-CCCeEEEECCHHHHHH----------------HHH--hCCCCEEEEeCCCC
Confidence 568888743 3333 3445556654 4676654332222110 011 135788887 3
Q ss_pred eCchH-HHHHHHhc-CCCCCcEEEEc--------------CCCCccCc-CCCcchHHHHHHHHHcCCc
Q 008048 340 GGDGT-VLWAASIF-KGPVPPIVPFS--------------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 340 GGDGT-lL~AAr~~-~~~~~PILGIN--------------lG~LGFLt-~~~~edi~~~L~~il~G~y 390 (579)
|.||. +++..+.. ....+||+-+. .|-.+||. +++++++...|..++++..
T Consensus 62 ~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 62 DQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp SSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 56663 44444442 13467887663 35566654 5889999999999887643
No 93
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=41.60 E-value=17 Score=37.19 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=43.4
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC---CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++...+|++|+=||=||++-++. .++|++.+.. ...|++.+ ++++++.++|.++++.
T Consensus 331 ~ll~~ad~~V~~~G~~t~~Ea~~----~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 403 (441)
T 2yjn_A 331 ALLPTCAATVHHGGPGSWHTAAI----HGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDD 403 (441)
T ss_dssp HHGGGCSEEEECCCHHHHHHHHH----TTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCCHHHHHHHHH----hCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcC
Confidence 45678999999999999998875 4579998855 23566544 4678888889888764
No 94
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=40.81 E-value=63 Score=26.42 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=40.2
Q ss_pred CccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEcC-------------CCCccCc-CCCcchHHHHHHHHHcC
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFSL-------------GSLGFMT-PFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~-~~~~PILGINl-------------G~LGFLt-~~~~edi~~~L~~il~G 388 (579)
.+|+||+ =|+|| .+++..+... ...+||+-+.. |-.|||. +++++++...|+.++.+
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 5788876 36788 4556666532 24678887753 6678865 48899999999988865
No 95
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=40.73 E-value=51 Score=34.21 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.7
Q ss_pred cEEEEEeCchHHHHHHHhcC---CCCCcEEEEcC
Q 008048 334 DLVVTLGGDGTVLWAASIFK---GPVPPIVPFSL 364 (579)
Q Consensus 334 DLVIvLGGDGTlL~AAr~~~---~~~~PILGINl 364 (579)
|+||.||| |.++.+++.++ ...+|++-|.+
T Consensus 107 d~iIalGG-Gsv~D~ak~~Aa~~~rgip~i~IPT 139 (393)
T 1sg6_A 107 TVVIALGG-GVIGDLTGFVASTYMRGVRYVQVPT 139 (393)
T ss_dssp CEEEEEES-HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred CEEEEECC-cHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99999999 78888887765 35789988876
No 96
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=39.64 E-value=93 Score=30.21 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=50.3
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
..++|++|.. ++.........+.+.|.+ .|+++..+..... ....+ ...+..+ ..++|.|++.+.
T Consensus 150 g~~~ia~i~~-~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~----~~~d~--------~~~~~~l~~~~~dai~~~~~ 215 (375)
T 4evq_A 150 GLKKAVTVTW-KYAAGEEMVSGFKKSFTA-GKGEVVKDITIAF----PDVEF--------QSALAEIASLKPDCVYAFFS 215 (375)
T ss_dssp TCCEEEEEEE-SSHHHHHHHHHHHHHHHH-TTCEEEEEEEECT----TCCCC--------HHHHHHHHHHCCSEEEEECC
T ss_pred CCcEEEEEec-CchHHHHHHHHHHHHHHH-cCCeEEEEEecCC----CCccH--------HHHHHHHHhcCCCEEEEecC
Confidence 4689999984 566666777788888876 5777643221110 00111 1111111 236899999888
Q ss_pred chHHH---HHHHhcCCCCCcEEEEc
Q 008048 342 DGTVL---WAASIFKGPVPPIVPFS 363 (579)
Q Consensus 342 DGTlL---~AAr~~~~~~~PILGIN 363 (579)
|...+ ++++.. +..+|++|..
T Consensus 216 ~~~a~~~~~~~~~~-g~~vp~~~~~ 239 (375)
T 4evq_A 216 GGGALKFIKDYAAA-NLGIPLWGPG 239 (375)
T ss_dssp THHHHHHHHHHHHT-TCCCCEEEEG
T ss_pred cchHHHHHHHHHHc-CCCceEEecC
Confidence 87644 444444 4568999863
No 97
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=38.23 E-value=45 Score=31.01 Aligned_cols=101 Identities=10% Similarity=0.159 Sum_probs=53.7
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEc-cchhH--hhhhcCCcccccccccchHHHhhh-CCCccEEEEE
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVE-PRVRA--ELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTL 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve-~~va~--~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvL 339 (579)
+++|+|+.-+.-... + +...++.|.. .++++.+- +.-.. .+.. ..... +. .+..+.+. ..++|+||+.
T Consensus 2 ~~kV~ill~~g~~~~-e-~~~~~~~l~~-ag~~v~~vs~~~~~~~~v~~-~~g~~-v~---~~~~l~~~~~~~~D~livp 73 (205)
T 2ab0_A 2 SASALVCLAPGSEET-E-AVTTIDLLVR-GGIKVTTASVASDGNLAITC-SRGVK-LL---ADAPLVEVADGEYDVIVLP 73 (205)
T ss_dssp CCEEEEEECTTCCHH-H-HHHHHHHHHH-TTCEEEEEECSSTTCCEEEC-TTSCE-EE---CSEEHHHHTTSCCSEEEEC
T ss_pred CcEEEEEEcCCCcHH-H-HHHHHHHHHH-CCCEEEEEeCCCCCCceeec-CCCeE-Ee---cCCCHHHCCcccCCEEEEC
Confidence 468999988765432 3 2335566765 46666432 21100 1110 00100 11 11112222 3679999999
Q ss_pred eCchH---------HHHHHHhcCCCCCcEEEEcCCCCccCcC
Q 008048 340 GGDGT---------VLWAASIFKGPVPPIVPFSLGSLGFMTP 372 (579)
Q Consensus 340 GGDGT---------lL~AAr~~~~~~~PILGINlG~LGFLt~ 372 (579)
||.|. ++...+.+.....||.+|-.|...+|..
T Consensus 74 GG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~ 115 (205)
T 2ab0_A 74 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVP 115 (205)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTT
T ss_pred CCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHH
Confidence 99642 3344555556788999998887334443
No 98
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=38.20 E-value=1.9e+02 Score=26.78 Aligned_cols=111 Identities=6% Similarity=-0.055 Sum_probs=64.3
Q ss_pred CCCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEE
Q 008048 262 SPPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTL 339 (579)
Q Consensus 262 ~~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvL 339 (579)
.+.++|||+... .++-...+...+.+.+.+ .|+.+.+-..-... ... ..-+. -...++|.||+.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~ 70 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES-RGYIGVLFDANADI-ERE------------KTLLRAIGSRGFDGLILQ 70 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT-TTCEEEEEECTTCH-HHH------------HHHHHHHHTTTCSEEEEE
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCCCH-HHH------------HHHHHHHHhCCCCEEEEe
Confidence 345789998864 566667777778788875 57877663211000 000 00011 124679999999
Q ss_pred eCchHHHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcch---HHHHHHHHHcC
Q 008048 340 GGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEH---YKDYLDSVLRG 388 (579)
Q Consensus 340 GGDGTlL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~ed---i~~~L~~il~G 388 (579)
+.+. -.....+...++|++-|+...-+. +.-+..++ ...+.+.+++-
T Consensus 71 ~~~~--~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 121 (276)
T 3jy6_A 71 SFSN--PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQ 121 (276)
T ss_dssp SSCC--HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTT
T ss_pred cCCc--HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHc
Confidence 9987 444455556789999998643221 22233343 33456666653
No 99
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=37.86 E-value=1.7e+02 Score=24.08 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=40.4
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~-~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
..+|+||+ =|.|| .+++..+... ...+||+-+. .|-.+||. +++++++...|.+++.+.
T Consensus 47 ~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 47 NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 35788887 26788 3555555432 3467887664 37778866 488999999999988754
No 100
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=36.46 E-value=12 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 008048 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (579)
|+++.|.+.+|..-.++|+++||+
T Consensus 1 HadGtFTsdysk~l~~~aak~fv~ 24 (29)
T 2g49_C 1 HSQGTFTSDYSKYLDSRRAQDFVQ 24 (29)
T ss_pred CCCccchHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999985
No 101
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=35.86 E-value=96 Score=29.00 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=62.4
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 340 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLG 340 (579)
+.++|||+... .++-...+...+.+.+.+ .|+.+.+-..-... ... ...+. -+..++|.||+.+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiI~~~ 72 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKA-NKYEALVATSQNSR-ISE------------REQILEFVHLKVDAIFITT 72 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECSSCH-HHH------------HHHHHHHHHTTCSEEEEEC
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCCCH-HHH------------HHHHHHHHHcCCCEEEEec
Confidence 35689998864 566666777777778876 47777653211000 000 00111 1235799999999
Q ss_pred CchHHH-HHHHhcCCCCCcEEEEcCCCCc--cCcCCCcchH---HHHHHHHHc
Q 008048 341 GDGTVL-WAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 341 GDGTlL-~AAr~~~~~~~PILGINlG~LG--FLt~~~~edi---~~~L~~il~ 387 (579)
.|.+.+ ...+.+...++|++-++...-+ .+.-+..++. ..+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 73 LDDVYIGSAIEEAKKAGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp SCTTTTHHHHHHHHHTTCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHH
Confidence 887653 3444555568999999875433 1233444443 344555554
No 102
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=35.80 E-value=91 Score=26.53 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeE-EEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLN-IYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~-V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
+++|+++.-..-....=+..++-+.+.+ .+++ +-++..-.. ++.....++|+||+-= +
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~-~gi~~~~i~~~~~~-------------------~~~~~~~~~DlIi~t~-~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQ-LGVSDIESASCSVG-------------------EAKGLASNYDIVVASN-H 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHH-TTCCCEEEEEECHH-------------------HHHHHGGGCSEEEEET-T
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHH-cCCCeEEEEEeeHH-------------------HHhhccCCCcEEEECC-c
Confidence 5789988887655555445588888876 4665 444322111 1112234689887632 1
Q ss_pred hHHHHHHHhcC-CCCCcEEEEcCCCCccCcCCCcchHHHHHHHHH
Q 008048 343 GTVLWAASIFK-GPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 343 GTlL~AAr~~~-~~~~PILGINlG~LGFLt~~~~edi~~~L~~il 386 (579)
| ...+. ...+|+++|+.. ++.+++++.|..++
T Consensus 77 ---l--~~~~~~~~~~~vi~i~~~-------l~~~ei~~~i~~~l 109 (110)
T 3czc_A 77 ---L--IHELDGRTNGKLIGLDNL-------MDDNEIKTKLEEAL 109 (110)
T ss_dssp ---T--GGGTTTSCSSEEEEESST-------TCHHHHHHHHHHHH
T ss_pred ---h--HHHhCcCCCceEEEeecc-------CCHHHHHHHHHHHh
Confidence 1 12222 234678886542 45677887777665
No 103
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=35.31 E-value=28 Score=39.00 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=45.7
Q ss_pred CEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchH
Q 008048 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGT 344 (579)
Q Consensus 265 k~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGT 344 (579)
++|+|+=..+. ....++++|.+ .|..+.+-+... . ....++|.||+-||-|.
T Consensus 447 k~IlviD~gds-----f~~~l~~~l~~-~G~~v~Vv~~d~------------------~----~~~~~~DgIIlsGGPg~ 498 (645)
T 3r75_A 447 CRALIVDAEDH-----FTAMIAQQLSS-LGLATEVCGVHD------------------A----VDLARYDVVVMGPGPGD 498 (645)
T ss_dssp CEEEEEESSCT-----HHHHHHHHHHH-TTCEEEEEETTC------------------C----CCGGGCSEEEECCCSSC
T ss_pred CEEEEEECCcc-----HHHHHHHHHHH-CCCEEEEEECCC------------------c----ccccCCCEEEECCCCCC
Confidence 57888876543 34668888876 466554432100 0 01235799999999764
Q ss_pred H-----------HHHHHhcCCCCCcEEEEcCCC
Q 008048 345 V-----------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 345 l-----------L~AAr~~~~~~~PILGINlG~ 366 (579)
. ....+.+....+|||||-+|.
T Consensus 499 p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~ 531 (645)
T 3r75_A 499 PSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSH 531 (645)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHH
Confidence 3 333444334578999999996
No 104
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=34.99 E-value=1.7e+02 Score=28.30 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=67.8
Q ss_pred CCCCCEEEEEEcCCChhHHHHHHHHHHHHHh-cCCeEEEEc-cc-hhHhhhh--c--CCcccccccccchHHHhhhCCCc
Q 008048 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLRE-QKKLNIYVE-PR-VRAELLT--E--SSYFSFVQTWKDEKEILLLHTKV 333 (579)
Q Consensus 261 ~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e-~~gi~V~ve-~~-va~~l~~--~--~~~~~~i~~~~~~~~~~~l~~~~ 333 (579)
......|+.+.+.....-...+.++++.|.+ .+++.+.+- .. ....+.. . .....+.. +.+..++..+...+
T Consensus 195 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g-~~~~~~~~~~~~~a 273 (394)
T 3okp_A 195 TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLG-RLEYQDMINTLAAA 273 (394)
T ss_dssp CTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEE-SCCHHHHHHHHHHC
T ss_pred CcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcC-CCCHHHHHHHHHhC
Confidence 3444678888886554444555556666553 245655542 11 1111111 0 01111222 22234566677889
Q ss_pred cEEEEE----------eCch-HHHHHHHhcCCCCCcEEEEcCCC--------CccCcCC-CcchHHHHHHHHHcC
Q 008048 334 DLVVTL----------GGDG-TVLWAASIFKGPVPPIVPFSLGS--------LGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 334 DLVIvL----------GGDG-TlL~AAr~~~~~~~PILGINlG~--------LGFLt~~-~~edi~~~L~~il~G 388 (579)
|++|.. .|=| +++-|.. .++||+.-+.|. -|++.+. +++++.++|.++++.
T Consensus 274 d~~v~ps~~~~~~~~~e~~~~~~~Ea~a----~G~PvI~~~~~~~~e~i~~~~g~~~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 274 DIFAMPARTRGGGLDVEGLGIVYLEAQA----CGVPVIAGTSGGAPETVTPATGLVVEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp SEEEECCCCBGGGTBCCSSCHHHHHHHH----TTCCEEECSSTTGGGGCCTTTEEECCTTCHHHHHHHHHHHHTC
T ss_pred CEEEecCccccccccccccCcHHHHHHH----cCCCEEEeCCCChHHHHhcCCceEeCCCCHHHHHHHHHHHHhC
Confidence 999873 2333 3444432 457999887642 5777764 788899999988864
No 105
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=34.94 E-value=64 Score=26.71 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=38.3
Q ss_pred CCccEEEE----EeCchH-HHHHHHhc----CCCCCcEEEEc----------CCCCccCc-CCCcchHHHHHHHHHcCCc
Q 008048 331 TKVDLVVT----LGGDGT-VLWAASIF----KGPVPPIVPFS----------LGSLGFMT-PFHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 331 ~~~DLVIv----LGGDGT-lL~AAr~~----~~~~~PILGIN----------lG~LGFLt-~~~~edi~~~L~~il~G~y 390 (579)
..+|+||+ -|.||. +++..+.. ....+||+.+. .|-.|||. +++++++...|..++.|..
T Consensus 53 ~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 53 RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 35788887 256774 44555432 12456777764 34457765 5889999999999998764
Q ss_pred e
Q 008048 391 S 391 (579)
Q Consensus 391 ~ 391 (579)
.
T Consensus 133 ~ 133 (140)
T 3c97_A 133 E 133 (140)
T ss_dssp -
T ss_pred C
Confidence 3
No 106
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.72 E-value=1.8e+02 Score=23.38 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE---
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL--- 339 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL--- 339 (579)
++.+|+||-. ++.. ...+...|.+ .+..|..-.+..+.+. .+. ...+|+||+=
T Consensus 5 ~~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlii~d~~l 60 (132)
T 3lte_A 5 QSKRILVVDD--DQAM---AAAIERVLKR-DHWQVEIAHNGFDAGI----------------KLS--TFEPAIMTLDLSM 60 (132)
T ss_dssp --CEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESSHHHHHH----------------HHH--HTCCSEEEEESCB
T ss_pred CCccEEEEEC--CHHH---HHHHHHHHHH-CCcEEEEeCCHHHHHH----------------HHH--hcCCCEEEEecCC
Confidence 3568888853 3333 3445556654 5676654332222110 011 1357888772
Q ss_pred -eCch-HHHHHHHhcCC-CCCcEEEEc------------CCCCccCc-CCCcchHHHHHHHHHcCCce
Q 008048 340 -GGDG-TVLWAASIFKG-PVPPIVPFS------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 340 -GGDG-TlL~AAr~~~~-~~~PILGIN------------lG~LGFLt-~~~~edi~~~L~~il~G~y~ 391 (579)
|+|| .+++..+.... ..+||+-+. .|-.+||. +++++++.+.|.....|.+.
T Consensus 61 ~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 61 PKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp TTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCCC
Confidence 4566 34555555432 356666553 26677755 48889999999998887643
No 107
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=34.59 E-value=2.6e+02 Score=26.14 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=41.1
Q ss_pred CCccEEEEE----eCch-HHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC-CCcchHHHHHHHHHcCCc
Q 008048 331 TKVDLVVTL----GGDG-TVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP-FHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 331 ~~~DLVIvL----GGDG-TlL~AAr~~~~~~~PILGINl-------------G~LGFLt~-~~~edi~~~L~~il~G~y 390 (579)
..+|+||+= |+|| .+++..+. ...+||+-+.. |-.|||.. ++++++..+|..++.|..
T Consensus 80 ~~~DlvllD~~lp~~~G~~l~~~lr~--~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 80 DHPDLILLDLGLPDFDGGDVVQRLRK--NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp SCCSEEEEECCSCHHHHHHHHHHHHT--TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHc--CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 357888872 5566 34455554 34678887753 77788665 889999999999998753
No 108
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=34.51 E-value=1.2e+02 Score=29.25 Aligned_cols=111 Identities=6% Similarity=0.059 Sum_probs=58.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
..+||++....++-...+..-+.+.+.++.|+.+.+...-.. .... ...+.. +..++|.||+.+.+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~-~~~~------------~~~i~~l~~~~vdgiIi~~~~ 72 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDD-NSKQ------------AEDVHYFMDEGVDLLIISANE 72 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTC-HHHH------------HHHHHHHHHTTCSEEEECCSS
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHH------------HHHHHHHHHcCCCEEEEeCCC
Confidence 568998876544444455566666665432787765321100 0000 000111 23579999999988
Q ss_pred hHH-HHHHHhcCCCCCcEEEEcCCCCc--cCcCCCcchH---HHHHHHHHc
Q 008048 343 GTV-LWAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 343 GTl-L~AAr~~~~~~~PILGINlG~LG--FLt~~~~edi---~~~L~~il~ 387 (579)
.+- -.....+...++|++-++...-+ .+.-+..++. ..+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 123 (325)
T 2x7x_A 73 AAPMTPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIAS 123 (325)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHH
Confidence 753 23344444467899999864322 2222334443 345555555
No 109
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=34.40 E-value=1.2e+02 Score=29.87 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=62.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccc-hhHhh---hhc---CCcccccccccchHHHhhhCCCccE
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPR-VRAEL---LTE---SSYFSFVQTWKDEKEILLLHTKVDL 335 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~-va~~l---~~~---~~~~~~i~~~~~~~~~~~l~~~~DL 335 (579)
...|+.+.+.....-...+.+.+..|.+..++.+.+ ... ....+ ... .....+... ..++..+...+|+
T Consensus 211 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~---~~~~~~~~~~adv 287 (394)
T 2jjm_A 211 EKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGK---QDNVAELLAMSDL 287 (394)
T ss_dssp -CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBS---CSCTHHHHHTCSE
T ss_pred CeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCc---hhhHHHHHHhCCE
Confidence 456777777665444555556666665443455444 211 11111 111 011112221 1223455677898
Q ss_pred EEEEe---Cch-HHHHHHHhcCCCCCcEEEEcCC---------CCccCcCC-CcchHHHHHHHHHcC
Q 008048 336 VVTLG---GDG-TVLWAASIFKGPVPPIVPFSLG---------SLGFMTPF-HSEHYKDYLDSVLRG 388 (579)
Q Consensus 336 VIvLG---GDG-TlL~AAr~~~~~~~PILGINlG---------~LGFLt~~-~~edi~~~L~~il~G 388 (579)
+|.-. |=| +++-|. ..++||+..+.| .-||+.+. +++++.++|.++++.
T Consensus 288 ~v~ps~~e~~~~~~~EAm----a~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 288 MLLLSEKESFGLVLLEAM----ACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp EEECCSCCSCCHHHHHHH----HTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred EEeccccCCCchHHHHHH----hcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 88532 223 444443 246799998874 45777664 678888888888763
No 110
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=34.36 E-value=1.8e+02 Score=23.39 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=38.5
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHc
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~-~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~ 387 (579)
..+|+||+ =|.|| .+++..+... ...+||+-+. .|--+||. +++++++...|.++++
T Consensus 45 ~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 45 FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 35788887 36788 3455555432 2468888664 47777865 4888888888887764
No 111
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=34.35 E-value=1.9e+02 Score=23.70 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=37.9
Q ss_pred CCccEEEE----EeCch-HHHHHHHhc-CCCCCcEEEEc-------------CCCCccCcC-C-CcchHHHHHHHHHc
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIF-KGPVPPIVPFS-------------LGSLGFMTP-F-HSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~-~~~~~PILGIN-------------lG~LGFLt~-~-~~edi~~~L~~il~ 387 (579)
..+|+||+ -|+|| .++...+.. ....+||+-+. .|-.+||.. + +++++...|..+++
T Consensus 50 ~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 50 AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 45788887 25566 345555542 23568888774 477777654 7 78888888887765
No 112
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=34.34 E-value=31 Score=34.70 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=43.6
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC---CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++...+|++|+-||=+|++-++. .++|++.+.. +..|++.+ ++++++.++|.++++.
T Consensus 295 ~~l~~ad~~v~~~G~~t~~Ea~~----~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 295 AILRQADLFVTHAGAGGSQEGLA----TATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDD 367 (430)
T ss_dssp HHHTTCSEEEECCCHHHHHHHHH----TTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHC
T ss_pred HHhhccCEEEECCCccHHHHHHH----hCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcC
Confidence 45678999999999999988774 3579998864 34677654 3678888999998864
No 113
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=34.07 E-value=31 Score=34.77 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=43.0
Q ss_pred hhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcC-------------CCCccCcC---CCcchHHHHHHHHHcC
Q 008048 328 LLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSL-------------GSLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 328 ~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINl-------------G~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++...+|++|+-||=||++-++. .++|++.+.. ...|...+ ++++++.++|.++++.
T Consensus 317 ~~l~~~d~~v~~~G~~t~~Ea~~----~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 389 (424)
T 2iya_A 317 DILTKASAFITHAGMGSTMEALS----NAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389 (424)
T ss_dssp HHHTTCSEEEECCCHHHHHHHHH----TTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCchhHHHHHHH----cCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcC
Confidence 45678999999999999999885 3579998864 23455443 4677888888888864
No 114
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=33.95 E-value=18 Score=34.15 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCccEEEEEeCchHHH----------HHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTVL----------WAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL----------~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-||-++.. ...+.+...++||+||-.|.
T Consensus 59 ~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 104 (219)
T 1q7r_A 59 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGL 104 (219)
T ss_dssp TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHH
T ss_pred hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHH
Confidence 4689999999977653 22333334678999998874
No 115
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=33.88 E-value=66 Score=26.16 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=41.8
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCce
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y~ 391 (579)
.+|+||+ -|+|| .+++..+.. ...+||+-+. .|-.|||. +++++++..+|..+++|...
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLETLRKR-QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHT-TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEecCCCCCChHHHHHHHHhc-CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 4788887 35666 455666554 3467887663 47777765 48899999999999988643
No 116
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=33.64 E-value=97 Score=30.09 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
..++|+||+.+++.-....+..+.+.+++ .|+++.... ... ....+. ..+..+ ..++|.|++.+-
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~-~~~----~~~d~~--------~~~~~l~~~~~d~v~~~~~ 213 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTE-LGGQVKRVF-FRS----GDQDFS--------AQLSVAMSFNPDAIYITGY 213 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEE-ECT----TCCCCH--------HHHHHHHHTCCSEEEECSC
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHH-CCCEEEEEE-eCC----CCccHH--------HHHHHHHhcCCCEEEEccc
Confidence 35799999876666666777788888876 577765332 111 011111 111111 356899988777
Q ss_pred chHH---HHHHHhcCCCCCcEEEE
Q 008048 342 DGTV---LWAASIFKGPVPPIVPF 362 (579)
Q Consensus 342 DGTl---L~AAr~~~~~~~PILGI 362 (579)
|... +++++.. +..+|++|.
T Consensus 214 ~~~a~~~~~~~~~~-g~~~~~~~~ 236 (366)
T 3td9_A 214 YPEIALISRQARQL-GFTGYILAG 236 (366)
T ss_dssp HHHHHHHHHHHHHT-TCCSEEEEC
T ss_pred hhHHHHHHHHHHHc-CCCceEEee
Confidence 6544 4555544 456788774
No 117
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=33.64 E-value=20 Score=37.20 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=27.6
Q ss_pred CCccEEEEEeCchHHHHHHHhcC-CCCCcEEEEcC
Q 008048 331 TKVDLVVTLGGDGTVLWAASIFK-GPVPPIVPFSL 364 (579)
Q Consensus 331 ~~~DLVIvLGGDGTlL~AAr~~~-~~~~PILGINl 364 (579)
.++|+||.||| |+++.+++.+. ...+|++-|..
T Consensus 87 ~~~D~IIavGG-Gs~iD~aK~iA~~~~~P~i~IPT 120 (364)
T 3iv7_A 87 NEIDLLVCVGG-GSTIGLAKAIAMTTALPIVAIPT 120 (364)
T ss_dssp TTCCEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHhccCCCEEEEcC
Confidence 57899999999 89999988765 34689999877
No 118
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=33.11 E-value=1.3e+02 Score=26.46 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=56.5
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
|++|+||.-..++. .+...++++|.+ .|.+|+.-.....++.. ...+. .+.++...+|++|+.=-+-
T Consensus 14 p~~IavIGaS~~~g--~~G~~~~~~L~~-~G~~V~~vnp~~~~i~G-------~~~~~---s~~el~~~vDlvii~vp~~ 80 (138)
T 1y81_A 14 FRKIALVGASKNPA--KYGNIILKDLLS-KGFEVLPVNPNYDEIEG-------LKCYR---SVRELPKDVDVIVFVVPPK 80 (138)
T ss_dssp CCEEEEETCCSCTT--SHHHHHHHHHHH-TTCEEEEECTTCSEETT-------EECBS---SGGGSCTTCCEEEECSCHH
T ss_pred CCeEEEEeecCCCC--CHHHHHHHHHHH-CCCEEEEeCCCCCeECC-------eeecC---CHHHhCCCCCEEEEEeCHH
Confidence 89999998766653 346778888876 57776642211111111 11111 2345667899999988888
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 TVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 TlL~AAr~~~~~~~PILGINlG~ 366 (579)
.+..++..+...+++.+=+..|+
T Consensus 81 ~v~~v~~~~~~~g~~~i~~~~~~ 103 (138)
T 1y81_A 81 VGLQVAKEAVEAGFKKLWFQPGA 103 (138)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHHHHHHcCCCEEEEcCcc
Confidence 88888876655566666666654
No 119
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=33.01 E-value=53 Score=36.25 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.3
Q ss_pred hCCCccEEEEEeCchH-----HHHHHHhcCCCCCcEEEEcCCC
Q 008048 329 LHTKVDLVVTLGGDGT-----VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 329 l~~~~DLVIvLGGDGT-----lL~AAr~~~~~~~PILGINlG~ 366 (579)
....+|.||+-||=|. .+.+++.+....+|+|||-+|.
T Consensus 352 ~L~~~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLGm 394 (550)
T 1vco_A 352 AFRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGL 394 (550)
T ss_dssp HTTTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred HHhcCCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcCH
Confidence 3467899999998664 3456666655679999998875
No 120
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=32.97 E-value=69 Score=32.82 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=42.1
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGG 341 (579)
.+++++++....-. ..-+.+|+++|+++ +.+. +-..+ +. .+.+......++...+|++|++||
T Consensus 155 ~~~kv~~vsQTT~s--~~~~~~iv~~L~~r~p~~~--~~~tI----------C~--AT~~RQ~av~~la~~~D~miVVGg 218 (297)
T 3dnf_A 155 KHERVGIVAQTTQN--EEFFKEVVGEIALWVKEVK--VINTI----------CN--ATSLRQESVKKLAPEVDVMIIIGG 218 (297)
T ss_dssp GCSEEEEEECTTCC--HHHHHHHHHHHHHHSSEEE--EECCC----------CS--HHHHHHHHHHHHGGGSSEEEEESC
T ss_pred CCCcEEEEEecCCc--HHHHHHHHHHHHHhCCCCC--CCCCc----------cH--HHHHHHHHHHHHHhhCCEEEEECC
Confidence 46899999987654 34578888888763 2222 11111 11 011112346677889999999999
Q ss_pred ----chHHHH
Q 008048 342 ----DGTVLW 347 (579)
Q Consensus 342 ----DGTlL~ 347 (579)
..+=|.
T Consensus 219 ~nSSNT~rL~ 228 (297)
T 3dnf_A 219 KNSGNTRRLY 228 (297)
T ss_dssp TTCHHHHHHH
T ss_pred CCCchhHHHH
Confidence 455553
No 121
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=32.95 E-value=89 Score=27.47 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=41.8
Q ss_pred HHHhhhCCCccEEEE---EeCch-HHHHHHHhcCCCCCcEEEEcC---------CCCccCcCCCcchHHHHHHHHHcC
Q 008048 324 KEILLLHTKVDLVVT---LGGDG-TVLWAASIFKGPVPPIVPFSL---------GSLGFMTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 324 ~~~~~l~~~~DLVIv---LGGDG-TlL~AAr~~~~~~~PILGINl---------G~LGFLt~~~~edi~~~L~~il~G 388 (579)
.++..+...+|++|. ..|=| +++-+. ..++||+.-+. |..||+.+-+++++.++|.++++.
T Consensus 89 ~e~~~~~~~adi~v~ps~~e~~~~~~~Eam----a~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 89 EELIDLYSRCKGLLCTAKDEDFGLTPIEAM----ASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKN 162 (177)
T ss_dssp HHHHHHHHHCSEEEECCSSCCSCHHHHHHH----HTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEeCCCcCCCChHHHHHH----HcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhC
Confidence 345666778899887 23445 444433 24679998876 456777666788899999998854
No 122
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.88 E-value=1.3e+02 Score=27.97 Aligned_cols=110 Identities=7% Similarity=0.075 Sum_probs=62.0
Q ss_pred CCCEEEEEEcC------CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccE
Q 008048 263 PPQTVVILTKP------NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDL 335 (579)
Q Consensus 263 ~pk~V~IV~Kp------~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DL 335 (579)
+.++|||+... .++-...+...+.+.+.+ .|+.+.+-..-...-. . ..-+. -...++|.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~-~------------~~~~~~~~~~~vdg 72 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EGYALYMSTGETEEEI-F------------NGVVKMVQGRQIGG 72 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TTCEEEECCCCSHHHH-H------------HHHHHHHHTTCCCE
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCCHHH-H------------HHHHHHHHcCCCCE
Confidence 45789999875 566666777778888876 5777766321110000 0 00011 12467999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCcc--CcCCCcchH---HHHHHHHHc
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF--MTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGF--Lt~~~~edi---~~~L~~il~ 387 (579)
||+++.+.+- .....+...++|++-|+...-+. +.-+..++. ..+.+.+++
T Consensus 73 iIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 128 (292)
T 3k4h_A 73 IILLYSREND-RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS 128 (292)
T ss_dssp EEESCCBTTC-HHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCh-HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 9999887542 23333444578999998643322 233334443 345555554
No 123
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.61 E-value=80 Score=25.91 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=39.3
Q ss_pred CccEEEE---E-eCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCCce
Q 008048 332 KVDLVVT---L-GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 332 ~~DLVIv---L-GGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~y~ 391 (579)
.+|+||+ + |.||. +++..+.. ...+||+-+. .|-.|||. +++++++...|.+++.+...
T Consensus 49 ~~dlvilD~~lp~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTGLEVLAEIRKK-HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHH-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 4788886 2 56773 55555553 3467887773 37788865 58899999999999887543
No 124
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=32.51 E-value=2.2e+02 Score=23.71 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=38.3
Q ss_pred CCccEEEE----EeCch-HHHHHHHhc---CCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcC
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIF---KGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~---~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G 388 (579)
..+|+||+ =|+|| .+++..+.. ....+||+-+. .|-.|||. +++++++.+.|.++..+
T Consensus 57 ~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 57 EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 45898887 37788 455555532 12457888774 36677765 48888999998887654
No 125
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=32.42 E-value=80 Score=26.46 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=40.6
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCce
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y~ 391 (579)
..+|+||+ -+.|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.|...
T Consensus 49 ~~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAEAIDGLVRLKRF-DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp CCCSEEEECC------CHHHHHHHHHH-CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred CCCCEEEEeCCCCCCchHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 35788886 34566 345555554 3467887763 477888664 8889999999999998654
Q ss_pred EE
Q 008048 392 IT 393 (579)
Q Consensus 392 Ie 393 (579)
+.
T Consensus 128 ~~ 129 (154)
T 2qsj_A 128 LP 129 (154)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 126
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.18 E-value=2.2e+02 Score=23.78 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE----E
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----L 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv----L 339 (579)
+.+|+||-. ++.. ...+..+|.+ .|+.|..-.+..+.+. .+. ...+|+||+ -
T Consensus 14 ~~~ILivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlvi~D~~l~ 69 (153)
T 3hv2_A 14 RPEILLVDS--QEVI---LQRLQQLLSP-LPYTLHFARDATQALQ----------------LLA--SREVDLVISAAHLP 69 (153)
T ss_dssp CCEEEEECS--CHHH---HHHHHHHHTT-SSCEEEEESSHHHHHH----------------HHH--HSCCSEEEEESCCS
T ss_pred CceEEEECC--CHHH---HHHHHHHhcc-cCcEEEEECCHHHHHH----------------HHH--cCCCCEEEEeCCCC
Confidence 567888743 3322 4555666654 4676654333222110 011 135788887 3
Q ss_pred eCchH-HHHHHHhcCCCCCcEEEEc-------------CC-CCccCcC-CCcchHHHHHHHHHcC
Q 008048 340 GGDGT-VLWAASIFKGPVPPIVPFS-------------LG-SLGFMTP-FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 340 GGDGT-lL~AAr~~~~~~~PILGIN-------------lG-~LGFLt~-~~~edi~~~L~~il~G 388 (579)
|+||. ++...+.. ...+||+-+. .| -.+||.. ++++++...|..++.+
T Consensus 70 ~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 70 QMDGPTLLARIHQQ-YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp SSCHHHHHHHHHHH-CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhH-CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 56663 44455543 3567887664 36 5677554 7888898888888764
No 127
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=32.11 E-value=38 Score=34.15 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEE--ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCchHHHHHHHhcCC
Q 008048 277 SVQILCAQMVRWLREQKKLNIYV--EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKG 354 (579)
Q Consensus 277 ~~~~l~~eii~~L~e~~gi~V~v--e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDGTlL~AAr~~~~ 354 (579)
...+...++++-|.+. +..+++ ...... ........ .+..|.+ ..++...+|++|+=||=||++-++..
T Consensus 251 ~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~-~~~~~~~v-~~~~~~~---~~~ll~~~d~~v~~~G~~t~~Ea~~~--- 321 (416)
T 1rrv_A 251 GIADAAKVAVEAIRAQ-GRRVILSRGWTELV-LPDDRDDC-FAIDEVN---FQALFRRVAAVIHHGSAGTEHVATRA--- 321 (416)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEECTTTTCC-CSCCCTTE-EEESSCC---HHHHGGGSSEEEECCCHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHHC-CCeEEEEeCCcccc-ccCCCCCE-EEeccCC---hHHHhccCCEEEecCChhHHHHHHHc---
Confidence 3456677788887653 455554 221110 00000011 1222322 23456889999999999999998864
Q ss_pred CCCcEEEEcCC-------------CCccCcC---CCcchHHHHHHHHHcC
Q 008048 355 PVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 355 ~~~PILGINlG-------------~LGFLt~---~~~edi~~~L~~il~G 388 (579)
++|++.+..+ ..|.+.+ ++++++.++|.++ ..
T Consensus 322 -G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 369 (416)
T 1rrv_A 322 -GVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LA 369 (416)
T ss_dssp -TCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TS
T ss_pred -CCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hC
Confidence 5799988652 2454433 5677888888888 53
No 128
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=31.73 E-value=2.2e+02 Score=27.18 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=48.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCe------EEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccE
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKL------NIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDL 335 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi------~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DL 335 (579)
+.++|||+....++-..++.+-+.+.|.++ |. .+.+... ....... ..-+.. ...++|.
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~-Gy~~g~~v~l~~~~~-~~~~~~~------------~~~~~~l~~~~vDg 72 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLLDGLKAK-GYEEGKNLEFDYKTA-QGNPAIA------------VQIARQFVGENPDV 72 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHT-TCCBTTTEEEEEEEC-TTCHHHH------------HHHHHHHHHTCCSE
T ss_pred CCcEEEEEEeccChhHHHHHHHHHHHHHHc-CCCCCCceEEEEecC-CCCHHHH------------HHHHHHHHhCCCCE
Confidence 467899997778888888888888899864 54 4432211 0000000 000111 2367999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEc
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFS 363 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGIN 363 (579)
||++|.+.+.. .... ..++||+-++
T Consensus 73 II~~~~~~~~~-~~~~--~~~iPvV~~~ 97 (302)
T 2qh8_A 73 LVGIATPTAQA-LVSA--TKTIPIVFTA 97 (302)
T ss_dssp EEEESHHHHHH-HHHH--CSSSCEEEEE
T ss_pred EEECChHHHHH-HHhc--CCCcCEEEEe
Confidence 99987654432 2222 4678987665
No 129
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=31.67 E-value=1.3e+02 Score=28.69 Aligned_cols=109 Identities=11% Similarity=0.023 Sum_probs=62.3
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 008048 264 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGG 341 (579)
.++||++.. ..++-...+..-+.+.+.+ .|+.+.+-..-.. .... ...+. -+..++|.||+.+.
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAES-LGAKVFVQSANGN-EETQ------------MSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHH-TSCEEEEEECTTC-HHHH------------HHHHHHHHHTTCSEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEECCCCC-HHHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 468898876 3566666777888888876 5787766322100 0000 00011 12367999999998
Q ss_pred chHHH-HHHHhcCCCCCcEEEEcCCCCc--cCcCCCcchH---HHHHHHHH
Q 008048 342 DGTVL-WAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHY---KDYLDSVL 386 (579)
Q Consensus 342 DGTlL-~AAr~~~~~~~PILGINlG~LG--FLt~~~~edi---~~~L~~il 386 (579)
|.+-+ ...+.+...++|++-++...-+ +..-+..++. ..+.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 68 NGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp STTSCHHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHH
Confidence 87632 3444555668999999875432 2222334443 34555665
No 130
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=31.60 E-value=40 Score=31.62 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=27.3
Q ss_pred CCccEEEEEeCchH----------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGT----------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGT----------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|+||+-||.|. ++...+.+.....+|.+|-.|.
T Consensus 73 ~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~ 118 (209)
T 3er6_A 73 DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGI 118 (209)
T ss_dssp SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHH
T ss_pred CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHH
Confidence 57899999999653 3455566666788999998864
No 131
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=31.39 E-value=20 Score=31.68 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=57.0
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEE-EccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEe
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIY-VEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLG 340 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~-ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLG 340 (579)
+.|++|+||.-..++. .....++++|.+. |..|| |.+... ++.... .+ ..+.++.. +|++++.=
T Consensus 2 ~~p~siAVVGaS~~~~--~~g~~v~~~L~~~-g~~V~pVnP~~~-~i~G~~-------~y---~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 2 NAMKKTLILGATPETN--RYAYLAAERLKSH-GHEFIPVGRKKG-EVLGKT-------II---NERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCCCEEEETCCSCTT--SHHHHHHHHHHHH-TCCEEEESSSCS-EETTEE-------CB---CSCCCCTT-CCEEEECS
T ss_pred CCCCEEEEEccCCCCC--CHHHHHHHHHHHC-CCeEEEECCCCC-cCCCee-------cc---CChHHCCC-CCEEEEEe
Confidence 3589999998777664 4578899999875 45554 444321 121111 11 12345667 99999998
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCC
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG 365 (579)
.--.+..+.+.+...+++.+=++.|
T Consensus 67 p~~~v~~~v~e~~~~g~k~v~~~~G 91 (122)
T 3ff4_A 67 NPQNQLSEYNYILSLKPKRVIFNPG 91 (122)
T ss_dssp CHHHHGGGHHHHHHHCCSEEEECTT
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC
Confidence 8888888777766555555546655
No 132
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=31.31 E-value=3.2e+02 Score=25.83 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred CccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHc
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLR 387 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~-~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~ 387 (579)
.+|+||+ =|.|| .+++..|... ...+||+.+. .|--|||+. ++++++...+.++++
T Consensus 169 ~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 169 AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHH
Confidence 3788886 37788 5666666543 3468888663 477888765 888988888877654
No 133
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=31.15 E-value=2.1e+02 Score=23.21 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=56.2
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE----
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT---- 338 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv---- 338 (579)
.+.+|+||-. ++.. ...+...|.. .+++|..-.+..+.+. .+. ...+|+||+
T Consensus 6 ~~~~iLivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlii~d~~l 61 (142)
T 3cg4_A 6 HKGDVMIVDD--DAHV---RIAVKTILSD-AGFHIISADSGGQCID----------------LLK--KGFSGVVLLDIMM 61 (142)
T ss_dssp CCCEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESSHHHHHH----------------HHH--TCCCEEEEEESCC
T ss_pred CCCeEEEEcC--CHHH---HHHHHHHHHH-CCeEEEEeCCHHHHHH----------------HHH--hcCCCEEEEeCCC
Confidence 4567888753 3333 4555566654 3677654332222110 011 234788887
Q ss_pred EeCchH-HHHHHHhc-CCCCCcEEEEcC-------------CCCccCc-CCCcchHHHHHHHHHc
Q 008048 339 LGGDGT-VLWAASIF-KGPVPPIVPFSL-------------GSLGFMT-PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 339 LGGDGT-lL~AAr~~-~~~~~PILGINl-------------G~LGFLt-~~~~edi~~~L~~il~ 387 (579)
-|.||. +++..+.. ....+||+-+.. |-.|||. +++++++...|..++.
T Consensus 62 ~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 62 PGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp SSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 245663 45555542 235678887742 4456654 4788888888887764
No 134
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=30.92 E-value=1.2e+02 Score=28.20 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=60.7
Q ss_pred CCCEEEEEEcC-C--ChhHHHHHHHHHHHHHhcCCeEEEEccch-hHhhhhcCCcccccccccchHHHhh-hCCCccEEE
Q 008048 263 PPQTVVILTKP-N--SNSVQILCAQMVRWLREQKKLNIYVEPRV-RAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVV 337 (579)
Q Consensus 263 ~pk~V~IV~Kp-~--~~~~~~l~~eii~~L~e~~gi~V~ve~~v-a~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVI 337 (579)
+.++||++... . ++-...+..-+.+.+.+ .|+.+.+-... ....... ...+.. +..++|.||
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~vdgii 70 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YEIKLEFMAPEKEEDYLVQ------------NELIEEAIKRKPDVIL 70 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HTCEEEECCCSSTTCHHHH------------HHHHHHHHHTCCSEEE
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cCCEEEEecCCCCCCHHHH------------HHHHHHHHHhCCCEEE
Confidence 45789999864 4 56566666777777765 47777653210 0000000 000111 235799999
Q ss_pred EEeCchHHH-HHHHhcCCCCCcEEEEcCCCCc--cCcCCCcchH---HHHHHHHHc
Q 008048 338 TLGGDGTVL-WAASIFKGPVPPIVPFSLGSLG--FMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 338 vLGGDGTlL-~AAr~~~~~~~PILGINlG~LG--FLt~~~~edi---~~~L~~il~ 387 (579)
+.+.|.+-+ ...+.+...++|++.++...-+ .+.-+..++. ..+.+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~ 126 (289)
T 3brs_A 71 LAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKN 126 (289)
T ss_dssp ECCSCTTTTHHHHTTTGGGTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHH
T ss_pred EeCCChHHhHHHHHHHHHCCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHH
Confidence 999886543 3445555567999999864322 2223333432 344555554
No 135
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=30.64 E-value=1.3e+02 Score=28.93 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=48.1
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
..++|++|+ .++.........+.+.|.+ .|+++........ ....+ ...+..+ ..++|.|++. +
T Consensus 138 g~~~ia~i~-~~~~~~~~~~~~~~~~l~~-~g~~v~~~~~~~~----~~~~~--------~~~~~~l~~~~~d~i~~~-~ 202 (358)
T 3hut_A 138 GFTSVAVIG-VTTDWGLSSAQAFRKAFEL-RGGAVVVNEEVPP----GNRRF--------DDVIDEIEDEAPQAIYLA-M 202 (358)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEEEEEEECT----TCCCC--------HHHHHHHHHHCCSEEEEE-S
T ss_pred CCCEEEEEe-cCcHHHHHHHHHHHHHHHH-cCCEEEEEEecCC----CCccH--------HHHHHHHHhcCCCEEEEc-c
Confidence 468999998 5666677777888888876 5777643221110 00111 0111111 2467877665 5
Q ss_pred ch-H---HHHHHHhcCCCCCcEEEEc
Q 008048 342 DG-T---VLWAASIFKGPVPPIVPFS 363 (579)
Q Consensus 342 DG-T---lL~AAr~~~~~~~PILGIN 363 (579)
|+ . ++++++.. +..+|++|..
T Consensus 203 ~~~~a~~~~~~~~~~-g~~~p~~~~~ 227 (358)
T 3hut_A 203 AYEDAAPFLRALRAR-GSALPVYGSS 227 (358)
T ss_dssp CHHHHHHHHHHHHHT-TCCCCEEECG
T ss_pred CchHHHHHHHHHHHc-CCCCcEEecC
Confidence 55 3 45555554 4578988754
No 136
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=30.53 E-value=75 Score=27.94 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=41.5
Q ss_pred CccEEEE----EeCch-HHHHHHHhcC-CCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHc
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFK-GPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLR 387 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~-~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~ 387 (579)
.+|+||+ =|.|| .+++..|... ...+||+-+. .|--+||+. |+++++.+.|.++++
T Consensus 57 ~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 5888887 47899 5666666543 3578998874 477888775 899999988888764
No 137
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=30.43 E-value=2.2e+02 Score=23.20 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=34.3
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-----------CCCCccCc-CCCcchHHHHHHHHHc
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-----------LGSLGFMT-PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-----------lG~LGFLt-~~~~edi~~~L~~il~ 387 (579)
.+|+||+ -|.|| .+++..+.. ...+||+-+. .|-.|||. +++++++...|..++.
T Consensus 55 ~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 55 KVDAIFLDINIPSLDGVLLAQNISQF-AHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHTTS-TTCCEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcc-CCCceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4788886 24566 244444443 2456676553 46677755 4778888888887765
No 138
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=30.37 E-value=25 Score=32.44 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=51.5
Q ss_pred CCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHh-hhhcCCcccccccccchHHHhhh-CCCccEEEEE
Q 008048 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAE-LLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTL 339 (579)
Q Consensus 262 ~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~-l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvL 339 (579)
..+++|+|+.-++-... + +....+.|.. .++++.+-...... +... .....+. .+..+.+. ..++|.||+.
T Consensus 21 ~~~~kV~ill~~g~~~~-e-~~~~~~~l~~-ag~~v~~vs~~~~~~v~~~-~g~~~v~---~~~~l~~~~~~~~D~livp 93 (193)
T 1oi4_A 21 GLSKKIAVLITDEFEDS-E-FTSPADEFRK-AGHEVITIEKQAGKTVKGK-KGEASVT---IDKSIDEVTPAEFDALLLP 93 (193)
T ss_dssp TCCCEEEEECCTTBCTH-H-HHHHHHHHHH-TTCEEEEEESSTTCEEECT-TSSCEEE---CCEEGGGCCGGGCSEEEEC
T ss_pred ccCCEEEEEECCCCCHH-H-HHHHHHHHHH-CCCEEEEEECCCCcceecC-CCCeEEE---CCCChHHCCcccCCEEEEC
Confidence 34678999987654322 2 2345666664 46665442111110 1000 0000000 01111121 2468999999
Q ss_pred eCchH--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 340 GGDGT--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 340 GGDGT--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
||.|+ ++...+.+.....||.||-.|.
T Consensus 94 GG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~ 128 (193)
T 1oi4_A 94 GGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP 128 (193)
T ss_dssp CBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred CCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 99553 4555566656788999999886
No 139
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=30.30 E-value=14 Score=27.20 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.4
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 008048 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (579)
|+++.|.+-+|.+-.++|+++||+
T Consensus 1 HsdGtFTsdyS~~l~~~aak~fv~ 24 (39)
T 1jrj_A 1 HGEGTFTSDLSKQMEEEAVRLFIE 24 (39)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999874
No 140
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=30.09 E-value=53 Score=36.30 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=29.1
Q ss_pred eecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhh
Q 008048 258 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELL 308 (579)
Q Consensus 258 l~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~ 308 (579)
|-+..+.++++|-. .+++.+.++++.+. + .|++++--..+++.+.
T Consensus 18 ~~~~~~i~raLISV-~DK~glv~~Ak~L~----~-lGfeI~ATgGTak~L~ 62 (534)
T 4ehi_A 18 LYFQSNAMRALLSV-SDKEGIVEFGKELE----N-LGFEILSTGGTFKLLK 62 (534)
T ss_dssp EEECTTCCEEEEEE-SSCTTHHHHHHHHH----H-TTCEEEECHHHHHHHH
T ss_pred eeeccCCcEEEEEE-cccccHHHHHHHHH----H-CCCEEEEccHHHHHHH
Confidence 44455778888877 47777766665553 3 5777776666665443
No 141
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=29.75 E-value=2.1e+02 Score=26.84 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=61.1
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 263 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 263 ~pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
+..+||++.. ..++-...+..-+.+.+.+ .|+.+.+-..... .... ...+.. ...++|.||+.+
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgii~~~ 84 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ-RGYQLLIACSEDQ-PDNE------------MRCIEHLLQRQVDAIIVST 84 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECTTC-HHHH------------HHHHHHHHHTTCSEEEECC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH-CCCEEEEEcCCCC-HHHH------------HHHHHHHHHcCCCEEEEeC
Confidence 3568999876 4566666677777777775 5777765321100 0000 001111 235799999999
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCCCCc-cCcCCCcchH---HHHHHHHHc
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLGSLG-FMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG~LG-FLt~~~~edi---~~~L~~il~ 387 (579)
.+.+--.....+...++|++-++...-+ -+.-+..++. ..+.+.+++
T Consensus 85 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~ 135 (293)
T 2iks_A 85 SLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRK 135 (293)
T ss_dssp SSCTTCHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHH
Confidence 8754212334555678999998864222 1222334443 345666665
No 142
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=29.51 E-value=41 Score=35.02 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=25.7
Q ss_pred CccEEEEEeCchHHHHHHHhcC-------------------CCCCcEEEEcC
Q 008048 332 KVDLVVTLGGDGTVLWAASIFK-------------------GPVPPIVPFSL 364 (579)
Q Consensus 332 ~~DLVIvLGGDGTlL~AAr~~~-------------------~~~~PILGINl 364 (579)
++|+||.||| |.++.+++.++ ...+|++.|..
T Consensus 109 ~~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 109 LPVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp CCSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 4999999999 89998887653 12589999986
No 143
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=29.25 E-value=2.1e+02 Score=27.50 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHhhhCCCccEEEEEeCchHH-HHHHHhcCCCCCcEEEEcC----------CCCccCcCCCcchHHHHHHHHHcC
Q 008048 325 EILLLHTKVDLVVTLGGDGTV-LWAASIFKGPVPPIVPFSL----------GSLGFMTPFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 325 ~~~~l~~~~DLVIvLGGDGTl-L~AAr~~~~~~~PILGINl----------G~LGFLt~~~~edi~~~L~~il~G 388 (579)
++..+...+|++|.-. |++ |-|+. .++||+..+. | -|++.+.+++++.++|.++++.
T Consensus 275 ~~~~~~~~ad~~v~~s--g~~~lEA~a----~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 275 DFHNVAARSYLMLTDS--GGVQEEAPS----LGVPVLVLRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSD 342 (375)
T ss_dssp HHHHHHHTCSEEEECC--HHHHHHHHH----HTCCEEECSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcEEEECC--CChHHHHHh----cCCCEEEecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhC
Confidence 4566677899998755 444 34432 3578887732 4 7888866888999999998864
No 144
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=29.07 E-value=2.5e+02 Score=23.37 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=57.2
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEE---
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTL--- 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvL--- 339 (579)
+.+|+||-. ++.. ...+...|.. .|+.|..-.+....+ ..+ ...+|+||+=
T Consensus 3 ~~~ILivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~-------------------~~l~~~~~dliild~~l 57 (155)
T 1qkk_A 3 APSVFLIDD--DRDL---RKAMQQTLEL-AGFTVSSFASATEAL-------------------AGLSADFAGIVISDIRM 57 (155)
T ss_dssp -CEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESCHHHHH-------------------HTCCTTCCSEEEEESCC
T ss_pred CCEEEEEeC--CHHH---HHHHHHHHHH-cCcEEEEECCHHHHH-------------------HHHHhCCCCEEEEeCCC
Confidence 457777753 3333 3455566654 577766433322211 111 1347888762
Q ss_pred -eCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcC
Q 008048 340 -GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 340 -GGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G 388 (579)
|.||. ++...+.. ...+||+-+. .|-.|||. +++++++...|..++.+
T Consensus 58 ~~~~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 58 PGMDGLALFRKILAL-DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp SSSCHHHHHHHHHHH-CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhh-CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 44663 44555544 3467888773 47778865 47888898888888764
No 145
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=28.99 E-value=21 Score=33.74 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=24.6
Q ss_pred CccEEEEEeC-chHHHH------HHHhcCCCCCcEEEEcCCC
Q 008048 332 KVDLVVTLGG-DGTVLW------AASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 332 ~~DLVIvLGG-DGTlL~------AAr~~~~~~~PILGINlG~ 366 (579)
++|.||.-|| .|++-. ..+.+...++|||||-+|.
T Consensus 54 ~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~PiLGIC~G~ 95 (212)
T 2a9v_A 54 GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGA 95 (212)
T ss_dssp TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHH
T ss_pred CCCEEEECCCCCCCCcccccchhHHHHHHhCCCCEEEEChHH
Confidence 4899999999 666432 1222334578999999886
No 146
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=28.96 E-value=56 Score=32.70 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=53.9
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
++.+|+||.....-+.......|.+.|.+..+++|.+-..... ..+... +. ....++|+|| +--.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~--~~d~~~------f~------~~L~~~D~vV-~~~~ 67 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQ--GKDMSG------FV------LDFSPYQLVV-LDYN 67 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCT--TSCCTT------CC------CCCTTCSEEE-ECCC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCcc--ccchhH------Hh------hhhhcCCEEE-EeCC
Confidence 5788999988655556777788888887654488776432110 000011 10 1246799999 4443
Q ss_pred hHHH-----HHHHhcCCCCCcEEEEcCCCCcc
Q 008048 343 GTVL-----WAASIFKGPVPPIVPFSLGSLGF 369 (579)
Q Consensus 343 GTlL-----~AAr~~~~~~~PILGINlG~LGF 369 (579)
|-.| .+...+...+.+++|+..+.-.|
T Consensus 68 ~~~l~~~~~~~l~~yV~~Ggglv~~H~a~~~~ 99 (281)
T 4e5v_A 68 GDSWPEETNRRFLEYVQNGGGVVIYHAADNAF 99 (281)
T ss_dssp SSCCCHHHHHHHHHHHHTTCEEEEEGGGGGSC
T ss_pred CCcCCHHHHHHHHHHHHcCCCEEEEecccccC
Confidence 3332 22322334578999999877555
No 147
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=28.93 E-value=74 Score=36.59 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=56.2
Q ss_pred cCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhh-cCCcccccccccchHHHhhh-CCCccEE
Q 008048 260 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLT-ESSYFSFVQTWKDEKEILLL-HTKVDLV 336 (579)
Q Consensus 260 W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~-~~~~~~~i~~~~~~~~~~~l-~~~~DLV 336 (579)
|...-++|+|+.-..-++.. +..+++.|++. |++|.+ .+... .+.. .+.. +. .+..+.+. ...+|.|
T Consensus 596 ~ti~grKVaILlaDGfEe~E--l~~pvdaLr~A-G~~V~vVS~~~g-~V~gs~G~~---V~---aD~t~~~v~s~~fDAL 665 (753)
T 3ttv_A 596 GDVKGRVVAILLNDEVRSAD--LLAILKALKAK-GVHAKLLYSRMG-EVTADDGTV---LP---IAATFAGAPSLTVDAV 665 (753)
T ss_dssp CCCTTCEEEEECCTTCCHHH--HHHHHHHHHHH-TCEEEEEESSSS-EEECTTSCE---EE---CCEETTTSCGGGCSEE
T ss_pred CCCCCCEEEEEecCCCCHHH--HHHHHHHHHHC-CCEEEEEEcCCC-eEEeCCCCE---Ee---cccchhhCCCcCCCEE
Confidence 55556899999887665542 56677788764 666544 32211 1111 1100 00 01111111 2358999
Q ss_pred EEEeC-------chHHHHHHHhcCCCCCcEEEEcCC
Q 008048 337 VTLGG-------DGTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 337 IvLGG-------DGTlL~AAr~~~~~~~PILGINlG 365 (579)
|+.|| |+.++..++.+.....||.+|--|
T Consensus 666 VVPGGg~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~G 701 (753)
T 3ttv_A 666 IVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDA 701 (753)
T ss_dssp EECCSCGGGTTTCHHHHHHHHHHHHTTCCEEEEGGG
T ss_pred EECCCChHHhhhCHHHHHHHHHHHhcCCeEEEECch
Confidence 99999 345677777777888999999754
No 148
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=28.71 E-value=26 Score=33.44 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCccEEEEEeCchH-------------------HHHHHHhcCCCCCcEEEEcCCCC
Q 008048 331 TKVDLVVTLGGDGT-------------------VLWAASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 331 ~~~DLVIvLGGDGT-------------------lL~AAr~~~~~~~PILGINlG~L 367 (579)
.++|+||+-||-|+ ++...+.+...+.||.+|-.|..
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~ 144 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA 144 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHH
Confidence 46899999999776 56677777777889999999985
No 149
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=28.41 E-value=1.6e+02 Score=27.36 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccc-cccccchHHHhhhCCCccEEEEEe-
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSF-VQTWKDEKEILLLHTKVDLVVTLG- 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~-i~~~~~~~~~~~l~~~~DLVIvLG- 340 (579)
|++|.+-.---++.-.....++.+.|++. ++++++...+.... .+...... ...+. ..+ .....+|+||.+-
T Consensus 4 M~kIYLAGP~Fs~~q~~~~~~l~~~L~~~~~g~~v~~P~~~~~~--~~~~~~~~~~~i~~--~D~-~~i~~aD~viA~ld 78 (162)
T 3ehd_A 4 MTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQENAAI--NDKSAYADSKMIAL--ADT-ENVLASDLLVALLD 78 (162)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHTTCTTEEEECGGGGSCC--CCTTCCCCHHHHHH--HHH-HHHHTCSEEEEECC
T ss_pred ccEEEEECCCCCHHHHHHHHHHHHHHHhcCCCCEEECCCccccc--cccccchHHHHHHH--HHH-HHHHHCCEEEEECC
Confidence 67899988887777777888899999863 57888765332110 00000000 00111 111 2356799999863
Q ss_pred ----CchHHHHHHHhcCCCCCcEEEEcC
Q 008048 341 ----GDGTVLWAASIFKGPVPPIVPFSL 364 (579)
Q Consensus 341 ----GDGTlL~AAr~~~~~~~PILGINl 364 (579)
.+||..-.--.. ..++||+++..
T Consensus 79 g~~~D~Gt~~EiG~A~-a~gkPVi~~~~ 105 (162)
T 3ehd_A 79 GPTIDAGVASEIGVAY-AKGIPVVALYT 105 (162)
T ss_dssp SSSCCHHHHHHHHHHH-HTTCCEEEECC
T ss_pred CCCCCCCHHHHHHHHH-HCCCEEEEEEc
Confidence 278887655443 35689999865
No 150
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=28.28 E-value=56 Score=33.08 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=42.1
Q ss_pred hhhCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC-------------CCccCc---CCCcchHHHHHHHHHc
Q 008048 327 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMT---PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 327 ~~l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG-------------~LGFLt---~~~~edi~~~L~~il~ 387 (579)
.++...+|++|+=||=||+.-+... ++|++.+..+ ..|... +++++.+.++|.++++
T Consensus 279 ~~ll~~~d~~v~~gG~~t~~Eal~~----GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 351 (404)
T 3h4t_A 279 QVLFGRVAAVVHHGGAGTTTAVTRA----GAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351 (404)
T ss_dssp HHHGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS
T ss_pred HHHHhhCcEEEECCcHHHHHHHHHc----CCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999988753 5799887542 234442 2467788888888876
No 151
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=28.26 E-value=60 Score=32.76 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=41.8
Q ss_pred hCCCccEEEEEeCchHHHHHHHhcCCCCCcEEEEcCC-------------CCccCcC---CCcchHHHHHHHHHcC
Q 008048 329 LHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-------------SLGFMTP---FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 329 l~~~~DLVIvLGGDGTlL~AAr~~~~~~~PILGINlG-------------~LGFLt~---~~~edi~~~L~~il~G 388 (579)
+...+|++|+=||=||++-++.. ++|++.+..+ ..|.+.+ ++++++.++|.++ ..
T Consensus 298 ~l~~~d~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 368 (415)
T 1iir_A 298 LFGRVAAVIHHGGAGTTHVAARA----GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LT 368 (415)
T ss_dssp HGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TS
T ss_pred HHhhCCEEEeCCChhHHHHHHHc----CCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cC
Confidence 45889999999999999998864 5799988552 2455443 4678888889888 53
No 152
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=28.25 E-value=1e+02 Score=29.15 Aligned_cols=90 Identities=9% Similarity=-0.041 Sum_probs=51.9
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 339 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvL 339 (579)
+-++|+++... .++-...+...+.+.+.+ .|+.+.+ ...-.. .... ...+.. +..++|.||+.
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~~------------~~~i~~l~~~~vdgiIi~ 68 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQA-LNVTVEYRGAAQYD-IQEQ------------ITVLEQAIAKNPAGIAIS 68 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHH-HTCEEEEEECSSSC-HHHH------------HHHHHHHHHHCCSEEEEC
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHH-cCCEEEEeCCCcCC-HHHH------------HHHHHHHHHhCCCEEEEc
Confidence 45788888764 566666777777777776 4777765 211000 0000 000111 23579999999
Q ss_pred eCchHH-HHHHHhcCCCCCcEEEEcCCC
Q 008048 340 GGDGTV-LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 340 GGDGTl-L~AAr~~~~~~~PILGINlG~ 366 (579)
+.|.+- ....+.+...++|++-++...
T Consensus 69 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 69 AIDPVELTDTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp CSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 988752 234444445678999998753
No 153
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=28.12 E-value=1e+02 Score=28.85 Aligned_cols=94 Identities=7% Similarity=-0.092 Sum_probs=52.2
Q ss_pred CCCEEEEEEcC--CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEE
Q 008048 263 PPQTVVILTKP--NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTL 339 (579)
Q Consensus 263 ~pk~V~IV~Kp--~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvL 339 (579)
+.++||++... .++-...+..-+.+.+.+++|..+.+...... .. + .... ...+.. +..++|.||+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~----~~---~-~~~~--~~~i~~l~~~~vdgiii~ 76 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYD----PY---D-YNSF--VATSQAVIEEQPDGVMFA 76 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEEC----SS---C-HHHH--HHHHHHHHTTCCSEEEEC
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCC----CC---C-HHHH--HHHHHHHHhcCCCEEEEC
Confidence 35688877654 56767777777777877532555544211000 00 0 0000 001111 35689999999
Q ss_pred eCchHH-HHHHHhcCCCCCcEEEEcCCC
Q 008048 340 GGDGTV-LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 340 GGDGTl-L~AAr~~~~~~~PILGINlG~ 366 (579)
+.|... -...+.+...++|++-|+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 104 (304)
T 3gbv_A 77 PTVPQYTKGFTDALNELGIPYIYIDSQI 104 (304)
T ss_dssp CSSGGGTHHHHHHHHHHTCCEEEESSCC
T ss_pred CCChHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 988642 233444444578999998743
No 154
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=28.09 E-value=2.3e+02 Score=26.55 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=51.0
Q ss_pred CEEEEEEc-CCChhHHHHHHHHHHHHHhcCCe-EEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 008048 265 QTVVILTK-PNSNSVQILCAQMVRWLREQKKL-NIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 341 (579)
Q Consensus 265 k~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi-~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGG 341 (579)
++|||+.. ..++-...+..-+.+.+.+ .|. ++.+...-.. .... ...+.. +..++|.||+.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLMNDSQND-QSKQ------------NDQIDVLLAKGVKALAINLV 68 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT-CTTEEEEEEECTTC-HHHH------------HHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh-cCCeEEEEecCCCC-HHHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 57888875 4556566667777777765 465 6665321000 0000 001111 2367999999998
Q ss_pred chHHH-HHHHhcCCCCCcEEEEcCC
Q 008048 342 DGTVL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 342 DGTlL-~AAr~~~~~~~PILGINlG 365 (579)
|.+.+ ...+.+...++|++-++..
T Consensus 69 ~~~~~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 69 DPAAAGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp SGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred CcchhHHHHHHHHHCCCcEEEecCC
Confidence 87532 3444555567999999874
No 155
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=27.61 E-value=1.5e+02 Score=26.16 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
|++|+||.-..++. .+...++++|.+ .|.+||- .+. ..++.. +..+. .+.++...+|++|+.=-+
T Consensus 22 p~~iaVVGas~~~g--~~G~~~~~~l~~-~G~~v~~Vnp~-~~~i~G-------~~~y~---sl~~l~~~vDlvvi~vp~ 87 (144)
T 2d59_A 22 YKKIALVGASPKPE--RDANIVMKYLLE-HGYDVYPVNPK-YEEVLG-------RKCYP---SVLDIPDKIEVVDLFVKP 87 (144)
T ss_dssp CCEEEEETCCSCTT--SHHHHHHHHHHH-TTCEEEEECTT-CSEETT-------EECBS---SGGGCSSCCSEEEECSCH
T ss_pred CCEEEEEccCCCCC--chHHHHHHHHHH-CCCEEEEECCC-CCeECC-------eeccC---CHHHcCCCCCEEEEEeCH
Confidence 88999998765553 235677788876 4666553 222 111111 11111 234566789999999888
Q ss_pred hHHHHHHHhcCCCCCcEEEEcCCC
Q 008048 343 GTVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GTlL~AAr~~~~~~~PILGINlG~ 366 (579)
-.+..++..+...+++.+=+..|.
T Consensus 88 ~~~~~vv~~~~~~gi~~i~~~~g~ 111 (144)
T 2d59_A 88 KLTMEYVEQAIKKGAKVVWFQYNT 111 (144)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCc
Confidence 888888877666667766555553
No 156
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.34 E-value=2.4e+02 Score=26.35 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=62.0
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 008048 264 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGG 341 (579)
.++|||+.. ..++-...+...+.+.+.+ .|+.+.+-..-...- .. ..-+. -...++|.||+.+.
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdgiIi~~~ 73 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARH-KGYSVLLANTAEDIV-RE------------REAVGQFFERRVDGLILAPS 73 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTTCHH-HH------------HHHHHHHHHTTCSEEEECCC
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHH-HH------------HHHHHHHHHCCCCEEEEeCC
Confidence 568898875 4566666777778888876 577776532110000 00 00011 12367999999998
Q ss_pred chHHHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcchH---HHHHHHHHc
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~edi---~~~L~~il~ 387 (579)
+. .-.....+...++|++-++...-+. +.-+..++. ..+.+.+.+
T Consensus 74 ~~-~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (291)
T 3egc_A 74 EG-EHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIA 122 (291)
T ss_dssp SS-CCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHH
Confidence 76 2344455667789999998743321 222334443 345555554
No 157
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=26.85 E-value=76 Score=26.13 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=36.2
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCC-CCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFKG-PVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~~-~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
.+|+||+ -|+|| .+++..+.... ..+||+-+. .|-.|||. +++++++...|..++.+.
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 4788887 35666 34555555432 567887663 36667755 488899999999988763
No 158
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=26.79 E-value=36 Score=34.91 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=26.8
Q ss_pred CccEEEEEeCchHHHHHHHhcCC-CCCcEEEEcC
Q 008048 332 KVDLVVTLGGDGTVLWAASIFKG-PVPPIVPFSL 364 (579)
Q Consensus 332 ~~DLVIvLGGDGTlL~AAr~~~~-~~~PILGINl 364 (579)
++|+||.||| |.++.+++.++- ..+|++.|..
T Consensus 94 ~~d~IIavGG-Gsv~D~aK~iA~~~~~p~i~IPT 126 (376)
T 1kq3_A 94 ETDVVVGIGG-GKTLDTAKAVAYKLKKPVVIVPT 126 (376)
T ss_dssp TCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecC
Confidence 7899999999 799988887653 4689999876
No 159
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=26.74 E-value=1.8e+02 Score=27.09 Aligned_cols=87 Identities=10% Similarity=0.034 Sum_probs=50.0
Q ss_pred CEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 265 QTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 265 k~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
++||++... .++-...+..-+.+.+.+ .|+.+.+...-.. .... ...+.. +..++|.||+.+.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQ-LGYEATIFDSQND-TAKE------------SAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHH-TTCEEEEEECTTC-HHHH------------HHHHHHHHHTTCSEEEECCSC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEeCCCCC-HHHH------------HHHHHHHHHcCCCEEEEecCC
Confidence 578888763 566666677777778875 5777665321100 0000 000111 23579999999887
Q ss_pred hHH-HHHHHhcCCCCCcEEEEcCC
Q 008048 343 GTV-LWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 343 GTl-L~AAr~~~~~~~PILGINlG 365 (579)
.+- ....+.+...++|++-++..
T Consensus 69 ~~~~~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 69 ADGSIANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSC
T ss_pred hHHHHHHHHHHHHCCCeEEEEecC
Confidence 542 22333444457899999864
No 160
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=26.58 E-value=2.4e+02 Score=22.44 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=36.2
Q ss_pred CCccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHc
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~ 387 (579)
..+|+||+ =|+|| .+++..+.. ..+||+-+. .|-.+||. +++++++...|..++.
T Consensus 45 ~~~dlii~D~~~p~~~g~~~~~~lr~~--~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 45 LQPDLILLDIMLPNKDGVEVCREVRKK--YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp TCCSEEEEETTSTTTHHHHHHHHHHTT--CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 45788887 25677 345555542 367887663 36677755 4788888888877765
No 161
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=26.30 E-value=1.1e+02 Score=25.27 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=38.7
Q ss_pred CCccEEEE----EeCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHc
Q 008048 331 TKVDLVVT----LGGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIv----LGGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~ 387 (579)
..+|+||+ =|.||. +++..+......+||+-+. .|-.|||. +++++++...|.+++.
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45798887 266884 4455554223457887763 37778865 4888889888888764
No 162
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.25 E-value=2.3e+02 Score=26.58 Aligned_cols=107 Identities=7% Similarity=0.034 Sum_probs=60.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
.++|||+....++-...+...+.+.+.+ .|+.+.+-..-.. .. ....+.. +..++|-||+++.|
T Consensus 12 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~-----~~---------~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 12 SRLLGVVFELQQPFHGDLVEQIYAAATR-RGYDVMLSAVAPS-----RA---------EKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -CEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEEEBTT-----BC---------HHHHHHHHTTTTEEEEEEETCC
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHH-CCCEEEEEeCCCC-----HH---------HHHHHHHHHhCCCCEEEEECCC
Confidence 4689998855677777777888888876 5777765321100 00 0111112 24679999999876
Q ss_pred hHHHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcchH---HHHHHHHHc
Q 008048 343 GTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 343 GTlL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~edi---~~~L~~il~ 387 (579)
.+- .....+.. ++|++-|+...-+- +.-+..++. ..+.+.+++
T Consensus 77 ~~~-~~~~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 123 (289)
T 3k9c_A 77 FDT-DELGALAD-RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTE 123 (289)
T ss_dssp CCH-HHHHHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHH
Confidence 543 22333334 78999988643211 122334443 345555554
No 163
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=25.94 E-value=83 Score=25.89 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhh---hHhHHHHHHHHHHHHH
Q 008048 63 ALRTVAKALRRAAEG---KAAAQAEAAEWKRRFE 93 (579)
Q Consensus 63 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 93 (579)
-|--|.|+.|.++-- ..+-+.|--.|.|||-
T Consensus 33 I~~MVEKTrRsltvLrRcQe~dReeln~W~Rr~~ 66 (72)
T 1wq6_A 33 IMDMVEKTRRSLTVLRRCQEADREELNYWIRRYS 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 355678888777755 3345678899999995
No 164
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=25.81 E-value=17 Score=31.90 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred CCccEEEE----EeCchHHHHHHHhcCCCCCcEEEEc----------CCCCccCcC-CCcchHHHHHHHHH
Q 008048 331 TKVDLVVT----LGGDGTVLWAASIFKGPVPPIVPFS----------LGSLGFMTP-FHSEHYKDYLDSVL 386 (579)
Q Consensus 331 ~~~DLVIv----LGGDGTlL~AAr~~~~~~~PILGIN----------lG~LGFLt~-~~~edi~~~L~~il 386 (579)
..+|+||+ =|.|| +.+++.+...++||+-+. .|..|||+. |+++++...|.+++
T Consensus 52 ~~~DlvllDi~mP~~~G--~el~~~lr~~~ipvI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 52 GQFDIAIIDVNLDGEPS--YPVADILAERNVPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCSSEEEECSSSSSCCS--HHHHHHHHHTCCSSCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCCCEEEEecCCCCCCH--HHHHHHHHcCCCCEEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 45888887 47888 334444444567876553 377888765 88888888776654
No 165
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=25.79 E-value=92 Score=25.42 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=39.6
Q ss_pred CccEEEE----EeCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 332 KVDLVVT----LGGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 332 ~~DLVIv----LGGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
.+|+||+ -|+|| .+++..+.. ...+||+-+. .|-.+||. +++++++...|+++++|.
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLDRIKAG-GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHT-TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 4788887 24566 355555554 3567887763 37777765 489999999999998763
No 166
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=25.79 E-value=75 Score=35.02 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=31.8
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchHHHHHHHHHcCCceEEEEeeEEEE
Q 008048 339 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCH 401 (579)
Q Consensus 339 LGGDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi~~~L~~il~G~y~Ie~R~rL~v~ 401 (579)
|||= ||||+|-.-... +-|+ .+|+++...|+.+.+|....+.|.+|-.+
T Consensus 132 IGGp-smlRaAAKN~~~-V~vv------------~dp~dY~~vl~~l~~g~~~~~~R~~lA~k 180 (523)
T 3zzm_A 132 IGGP-AMVRAAAKNHPS-AAVV------------TDPLGYHGVLAALRAGGFTLAERKRLASL 180 (523)
T ss_dssp SHHH-HHHHHHHHTTTT-CEEE------------CCGGGHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred cCcH-HHHHHHHhcCCC-EEEE------------CCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4665 788766543333 2222 36888888888887787777777766544
No 167
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.63 E-value=3.2e+02 Score=25.49 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=49.9
Q ss_pred CCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 008048 263 PPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 340 (579)
Q Consensus 263 ~pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLG 340 (579)
+..+||++.. ..++-...+...+.+.+.+ .|+.+.+-..-.. .... ..-+. -...++|.||+.+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiI~~~ 72 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK-NGYRILLCNTESD-LARS------------RSCLTLLSGKMVDGVITMD 72 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTTC-HHHH------------HHHTHHHHTTCCSEEEECC
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH-cCCEEEEEeCCCC-HHHH------------HHHHHHHHhCCCCEEEEeC
Confidence 3568999885 4566666777777788875 5777665321100 0000 00011 1246799999998
Q ss_pred CchH--HHHHHHhcCCCCCcEEEEcCC
Q 008048 341 GDGT--VLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 341 GDGT--lL~AAr~~~~~~~PILGINlG 365 (579)
.+.+ .+.. +. .++|++-++..
T Consensus 73 ~~~~~~~~~~---l~-~~iPvV~~~~~ 95 (285)
T 3c3k_A 73 ALSELPELQN---II-GAFPWVQCAEY 95 (285)
T ss_dssp CGGGHHHHHH---HH-TTSSEEEESSC
T ss_pred CCCChHHHHH---Hh-cCCCEEEEccc
Confidence 7643 3333 33 57899999763
No 168
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.53 E-value=2.7e+02 Score=22.61 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=57.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE---e
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL---G 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL---G 340 (579)
+.+|+||-. ++.. ...+...|.+ .|++|..-.+....+. .+. ...+|+||+= |
T Consensus 4 ~~~iLivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlvi~d~~~~ 59 (142)
T 2qxy_A 4 TPTVMVVDE--SRIT---FLAVKNALEK-DGFNVIWAKNEQEAFT----------------FLR--REKIDLVFVDVFEG 59 (142)
T ss_dssp CCEEEEECS--CHHH---HHHHHHHHGG-GTCEEEEESSHHHHHH----------------HHT--TSCCSEEEEECTTT
T ss_pred CCeEEEEeC--CHHH---HHHHHHHHHh-CCCEEEEECCHHHHHH----------------HHh--ccCCCEEEEeCCCC
Confidence 567888753 3333 3455556654 5677664332222110 011 2357888763 3
Q ss_pred CchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCc
Q 008048 341 GDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPI 390 (579)
Q Consensus 341 GDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y 390 (579)
.||. +++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.+.-
T Consensus 60 ~~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 60 EESLNLIRRIREE-FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp HHHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 3442 34444443 3468888773 377788654 888999999999988643
No 169
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.38 E-value=1e+02 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHhhhcCc
Q 008048 80 AAQAEAAEWKRRFELERARNLRLENKGNG 108 (579)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (579)
-+|.++.++|.|||=|.++....|+...+
T Consensus 45 n~~~~~edfk~KyE~E~~~r~~~E~di~~ 73 (119)
T 3ol1_A 45 NLAEDIMRLREKLQEEMLQREEAENTLQS 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 36778899999999999988888877665
No 170
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.28 E-value=2.1e+02 Score=26.80 Aligned_cols=109 Identities=10% Similarity=0.032 Sum_probs=55.6
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEc-cchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEe
Q 008048 264 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVE-PRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve-~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLG 340 (579)
.++||++.. ..++-...+...+.+.+.+ .|+.+.+. ..-.. .... ...+. -...++|.||+.+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiI~~~ 73 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHK-NGYNLIIVYSGSAD-PEEQ------------KHALLTAIERPVMGILLLS 73 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHT-TTCEEEEEC-----------------------CHHHHHHSSCCSEEEEES
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCCCCC-HHHH------------HHHHHHHHhcCCCEEEEec
Confidence 468999875 4566666777777778875 57877654 21100 0000 00011 1246799999998
Q ss_pred CchHHHHHHHhcCCCCCcEEEEcCCCCccCcCCCcchH---HHHHHHHHc
Q 008048 341 GDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 341 GDGTlL~AAr~~~~~~~PILGINlG~LGFLt~~~~edi---~~~L~~il~ 387 (579)
.+.+- .....+...++|++-++...-+.+.-+..++. ..+.+.+.+
T Consensus 74 ~~~~~-~~~~~l~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 122 (290)
T 3clk_A 74 IALTD-DNLQLLQSSDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLIN 122 (290)
T ss_dssp CC-----CHHHHHCC--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHT
T ss_pred ccCCH-HHHHHHHhCCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHH
Confidence 87541 22233345678999998743332222333443 345555554
No 171
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.35 E-value=2.7e+02 Score=26.98 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=52.7
Q ss_pred CCEEEEEEcC-CC-hhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhC---CCccEEEE
Q 008048 264 PQTVVILTKP-NS-NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLH---TKVDLVVT 338 (579)
Q Consensus 264 pk~V~IV~Kp-~~-~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~---~~~DLVIv 338 (579)
..+|+++... .+ +-...+..-+.+.+.+ .|+.+.+-..-.. ... ....+..+. .++|.||+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~~~~~~~~~~~-~~~------------~~~~i~~~i~~~~~vDgiIi 68 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARD-LGLDLRILYAERD-PQN------------TLQQARELFQGRDKPDYLML 68 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHH-HTCEEEEEECTTC-HHH------------HHHHHHHHHHSSSCCSEEEE
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHH-cCCeEEEEECCCC-HHH------------HHHHHHHHHhcCCCCCEEEE
Confidence 4578888764 33 5556667777777765 4777665321000 000 001122222 48999999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEcCCC
Q 008048 339 LGGDGTVLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 339 LGGDGTlL~AAr~~~~~~~PILGINlG~ 366 (579)
.+.+...-...+.+...++||+-|+...
T Consensus 69 ~~~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 69 VNEQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp ECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred eCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 9743444455667777899999998753
No 172
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=24.33 E-value=1.3e+02 Score=29.13 Aligned_cols=90 Identities=6% Similarity=-0.135 Sum_probs=51.3
Q ss_pred CCCCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCC--ccEEE
Q 008048 262 SPPQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTK--VDLVV 337 (579)
Q Consensus 262 ~~pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~--~DLVI 337 (579)
.+..+||++.. ..++-...+..-+.+.+.+ .|+.+.+-..-.. .... ...+.. +..+ +|.||
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~l~~~~~~~~-~~~~------------~~~i~~l~~~~~~vdgiI 68 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKS-VGLPYVPLTTEGS-SEKG------------IADIRALLQKTGGNLVLN 68 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHH-HTCCEEEEECTTC-HHHH------------HHHHHHHHHHTTTCEEEE
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHH-cCCEEEEecCCCC-HHHH------------HHHHHHHHHCCCCCCEEE
Confidence 34578999886 4566666677777777775 4666654321000 0000 001111 1245 99999
Q ss_pred EEeCchHHH-HHHHhcCCCCCcEEEEcCC
Q 008048 338 TLGGDGTVL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 338 vLGGDGTlL-~AAr~~~~~~~PILGINlG 365 (579)
+.+.+..-+ ...+.+...++|++.++..
T Consensus 69 i~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 69 VDPNDSADARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred EeCCCHHHHHHHHHHHHHCCCeEEEECCC
Confidence 999886532 3334444457899999864
No 173
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=24.13 E-value=14 Score=34.17 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=45.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCch
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDG 343 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGDG 343 (579)
+++|+|+.-+..... ..++++|.+ .|.++.+-+. . +...++|.||+-||-+
T Consensus 2 ~~~i~il~~~~~~~~----~~~~~~l~~-~g~~~~~~~~--------------------~----~~~~~~d~lil~Gg~~ 52 (213)
T 3d54_D 2 KPRACVVVYPGSNCD----RDAYHALEI-NGFEPSYVGL--------------------D----DKLDDYELIILPGGFS 52 (213)
T ss_dssp CCEEEEECCTTEEEH----HHHHHHHHT-TTCEEEEECT--------------------T----CCCSSCSEEEECEECG
T ss_pred CcEEEEEEcCCCCcc----HHHHHHHHH-CCCEEEEEec--------------------C----CCcccCCEEEECCCCc
Confidence 468999877654321 245778875 4555543210 0 0134689999999865
Q ss_pred H--------------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 344 T--------------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 344 T--------------lL~AAr~~~~~~~PILGINlG~ 366 (579)
+ ++...+.+...++||+||-.|.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~ 89 (213)
T 3d54_D 53 YGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGF 89 (213)
T ss_dssp GGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHH
T ss_pred hhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHH
Confidence 3 3344444444578999998875
No 174
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=24.02 E-value=4.2e+02 Score=24.31 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=59.6
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEE---
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTL--- 339 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvL--- 339 (579)
++.+|+||-. ++.. ...+..+|.. .+++|..-.+..+.+. .+. ...+|+||+=
T Consensus 22 ~~~~ILivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~al~----------------~~~--~~~~dlvllD~~l 77 (250)
T 3r0j_A 22 PEARVLVVDD--EANI---VELLSVSLKF-QGFEVYTATNGAQALD----------------RAR--ETRPDAVILDVXM 77 (250)
T ss_dssp SSCEEEEECS--CHHH---HHHHHHHHHH-TTCEEEEESSHHHHHH----------------HHH--HHCCSEEEEESCC
T ss_pred CCceEEEEEC--CHHH---HHHHHHHHHH-CCCEEEEECCHHHHHH----------------HHH--hCCCCEEEEeCCC
Confidence 3567888743 3333 3445556654 4777664332222110 011 1247888873
Q ss_pred -eCch-HHHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcC
Q 008048 340 -GGDG-TVLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRG 388 (579)
Q Consensus 340 -GGDG-TlL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G 388 (579)
|+|| .+++..+.. ...+||+-+. .|-.|||.. ++++++...|..++.+
T Consensus 78 p~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 78 PGMDGFGVLRRLRAD-GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp SSSCHHHHHHHHHHT-TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 6687 344555543 3467887663 477888664 8899999999988764
No 175
>1gea_A Pituitary adenylate cyclase activating polypeptide; beta coil, consecutive beta turns, type-II beta turn, type- I beta turn, helix, neuropeptide; HET: LYN; NMR {Synthetic} SCOP: j.81.1.1
Probab=23.86 E-value=14 Score=25.06 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred CCCCCccccccccccHHHHHHHhhc
Q 008048 23 HSENGFGDSLSLLQSEKAVQEILQQ 47 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (579)
|+++.|.+.+|-..-+.++|.+||.
T Consensus 1 Hsdg~FTsdySry~~~~~~q~fl~~ 25 (26)
T 1gea_A 1 HSDGIFTDSYSRYRKQMAVKXXXXX 25 (26)
T ss_dssp CCCSSSSSHHHHHHHHHHHCC----
T ss_pred CCCccchhHHHHHHHHHHHHhcccc
Confidence 5788999999999999999999863
No 176
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.78 E-value=2.4e+02 Score=27.11 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=61.9
Q ss_pred CCCEEEEEEcC---CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEE
Q 008048 263 PPQTVVILTKP---NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVT 338 (579)
Q Consensus 263 ~pk~V~IV~Kp---~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIv 338 (579)
+.++||++... .++-...+...+.+.+.+ .|+.+.+-..-... ..+ ...+.. ...++|-||+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi 125 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGRQLLLADGKHSA-EEE------------RQAIQYLLDLRCDAIMI 125 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TTCEEEEEECTTSH-HHH------------HHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHH-CCCEEEEEeCCCCh-HHH------------HHHHHHHHhCCCCEEEE
Confidence 35789998764 566666777888888876 57777653311000 000 000111 2357999999
Q ss_pred EeCchHHHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcchH---HHHHHHHHc
Q 008048 339 LGGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 339 LGGDGTlL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~edi---~~~L~~il~ 387 (579)
.+.+.+--.....+....+|++-++...-+. +.-+..++. ..+.+.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 178 (338)
T 3dbi_A 126 YPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELIN 178 (338)
T ss_dssp CCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHH
T ss_pred eCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHH
Confidence 9877553333334444568999988643332 122344443 345566654
No 177
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.72 E-value=2.1e+02 Score=26.48 Aligned_cols=109 Identities=10% Similarity=0.077 Sum_probs=60.5
Q ss_pred CEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeCc
Q 008048 265 QTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGGD 342 (579)
Q Consensus 265 k~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGGD 342 (579)
++||++... .++-...+...+.+.+.+ .|+.+.+-..-... ... ...+.. +..++|-||+.+.|
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~-~~~------------~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE-QGYSMLLTSTNNNP-DNE------------RRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH-TTCEEEEEECTTCH-HHH------------HHHHHHHHHTCCSEEEECCSS
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCCCh-HHH------------HHHHHHHHHCCCCEEEEeccc
Confidence 689988764 556667777888888876 57777653211000 000 001111 23679999999987
Q ss_pred hH----HHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcchH---HHHHHHHHc
Q 008048 343 GT----VLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 343 GT----lL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~edi---~~~L~~il~ 387 (579)
.+ .......+...++|++-++...-+. +.-+..++. ..+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~ 134 (298)
T 3tb6_A 82 SALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLS 134 (298)
T ss_dssp TTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHH
Confidence 53 2233344445678999998643222 122334443 345555554
No 178
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=23.68 E-value=1.2e+02 Score=27.29 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=40.9
Q ss_pred CCccEEEEEe-CchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-C-CcchHHHHHHHHHcCC
Q 008048 331 TKVDLVVTLG-GDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-F-HSEHYKDYLDSVLRGP 389 (579)
Q Consensus 331 ~~~DLVIvLG-GDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~-~~edi~~~L~~il~G~ 389 (579)
..+|+|| +. .||. +++..+.. ...+||+-+. .|-.|||.. + +++++..+|..++.|.
T Consensus 43 ~~~dlvi-lp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 43 RNYDLVM-VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp SCCSEEE-ECCTTHHHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CCCCEEE-eCCCCHHHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 3589999 64 4773 44555554 3368988774 377888654 7 8999999999999875
No 179
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=23.58 E-value=1.6e+02 Score=23.81 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=38.7
Q ss_pred CccEEEE----EeCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 332 KVDLVVT----LGGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 332 ~~DLVIv----LGGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
.+|+||+ -|.||. +++..+......+||+-+. .|-.|||. +++++++...|..++...
T Consensus 48 ~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 48 RPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 4788876 256774 4555554323456776552 47778865 488999999999887653
No 180
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=23.47 E-value=23 Score=32.16 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=23.5
Q ss_pred CCccEEEEEeCchHH----------HHHHHhcCCCC-CcEEEEcCCC
Q 008048 331 TKVDLVVTLGGDGTV----------LWAASIFKGPV-PPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLGGDGTl----------L~AAr~~~~~~-~PILGINlG~ 366 (579)
.++|.+|.-||-++. +...+.+...+ +||+||-.|.
T Consensus 38 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~ 84 (191)
T 2ywd_A 38 EGLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGA 84 (191)
T ss_dssp TTCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHH
T ss_pred ccCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHH
Confidence 358999999994322 22333333456 8999998873
No 181
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=23.07 E-value=1.6e+02 Score=23.53 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=38.0
Q ss_pred CccEEEE---E-eCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 332 KVDLVVT---L-GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 332 ~~DLVIv---L-GGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
.+|+||+ + |.||. +++..+.. ...+||+-+. .|-.|||. +++++++...|.+++.+.
T Consensus 47 ~~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1srr_A 47 RPDLVLLDMKIPGMDGIEILKRMKVI-DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLK 122 (124)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC-
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHh-CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhccc
Confidence 4788886 2 55773 45555543 3567887763 36678865 488888988888887653
No 182
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=23.07 E-value=41 Score=31.46 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=28.7
Q ss_pred CCccEEEEEeCchH---------HHHHHHhcCCCCCcEEEEcCCCC
Q 008048 331 TKVDLVVTLGGDGT---------VLWAASIFKGPVPPIVPFSLGSL 367 (579)
Q Consensus 331 ~~~DLVIvLGGDGT---------lL~AAr~~~~~~~PILGINlG~L 367 (579)
..+|+||+.||.|+ ++...+.+.....||.+|-.|..
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~ 133 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS 133 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHH
Confidence 47899999999876 34455666667889999998764
No 183
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=22.93 E-value=2.9e+02 Score=21.99 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=40.6
Q ss_pred CccEEEE---E-eCchH-HHHHHHhcCCCCCcEEEEc-------------CCCCccCcC-CCcchHHHHHHHHHcCCce
Q 008048 332 KVDLVVT---L-GGDGT-VLWAASIFKGPVPPIVPFS-------------LGSLGFMTP-FHSEHYKDYLDSVLRGPIS 391 (579)
Q Consensus 332 ~~DLVIv---L-GGDGT-lL~AAr~~~~~~~PILGIN-------------lG~LGFLt~-~~~edi~~~L~~il~G~y~ 391 (579)
.+|+||+ + |.||. +++..+.. ...+||+-+. .|-.|||.. ++++++...|.+++.+.-.
T Consensus 47 ~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~ 124 (126)
T 1dbw_A 47 RNGVLVTDLRMPDMSGVELLRNLGDL-KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLVA 124 (126)
T ss_dssp CSEEEEEECCSTTSCHHHHHHHHHHT-TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTCC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhhhh
Confidence 4788876 2 56774 45555554 3567888773 477888654 8889999999998876433
No 184
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.89 E-value=2.6e+02 Score=25.85 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=48.0
Q ss_pred CCCEEEEEEc---CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEE
Q 008048 263 PPQTVVILTK---PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVT 338 (579)
Q Consensus 263 ~pk~V~IV~K---p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIv 338 (579)
+..+||++.. ..++-...+...+.+.+.+ .|+++.+...-.. .... ...+.. +..++|.||+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgii~ 83 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEE-KGRQLLLADGKHS-AEEE------------RQAIQYLLDLRCDAIMI 83 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHH-TTCEEEEECCTTS-HHHH------------HHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHH-CCCEEEEEeCCCC-HHHH------------HHHHHHHHhcCCCEEEE
Confidence 3568999875 3555566677777778875 5777665321100 0000 001111 2357999999
Q ss_pred EeCch--HHHHHHHhcCC-CCCcEEEEcCC
Q 008048 339 LGGDG--TVLWAASIFKG-PVPPIVPFSLG 365 (579)
Q Consensus 339 LGGDG--TlL~AAr~~~~-~~~PILGINlG 365 (579)
.+.|. ..+.. +.. .++|++-++..
T Consensus 84 ~~~~~~~~~~~~---l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 84 YPRFLSVDEIDD---IIDAHSQPIMVLNRR 110 (296)
T ss_dssp ECSSSCHHHHHH---HHHTCSSCEEEESCC
T ss_pred ecCCCChHHHHH---HHhcCCCCEEEEccc
Confidence 98854 33332 333 57899999864
No 185
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=22.81 E-value=48 Score=30.44 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEc-cchhHhhhhcCCcccccccccchHHHhhh--CCCccEEEEEe
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVE-PRVRAELLTESSYFSFVQTWKDEKEILLL--HTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve-~~va~~l~~~~~~~~~i~~~~~~~~~~~l--~~~~DLVIvLG 340 (579)
+++|+|+.-++-... + +...++.|.. .++++.+- +.-...+.. ..... +. .+..+.+. ..++|+||+.|
T Consensus 3 ~~~v~ill~~g~~~~-e-~~~~~~~l~~-ag~~v~~vs~~~~~~v~~-~~g~~-v~---~d~~l~~~~~~~~~D~livpG 74 (197)
T 2rk3_A 3 SKRALVILAKGAEEM-E-TVIPVDVMRR-AGIKVTVAGLAGKDPVQC-SRDVV-IC---PDASLEDAKKEGPYDVVVLPG 74 (197)
T ss_dssp CCEEEEEECTTCCHH-H-HHHHHHHHHH-TTCEEEEEETTCSSCEEC-TTSCE-EC---CSEEHHHHHTTCCCSEEEECC
T ss_pred CCEEEEEECCCCcHH-H-HHHHHHHHHH-CCCEEEEEEcCCCCcccc-CCCCE-Ee---CCcCHHHcCCccCCCEEEECC
Confidence 478999987655432 2 2335666765 46666442 110000100 00000 11 11112222 36789999999
Q ss_pred Cch-H--------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 341 GDG-T--------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 341 GDG-T--------lL~AAr~~~~~~~PILGINlG~ 366 (579)
|.| . ++...+.+.....||.+|-.|.
T Consensus 75 G~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~ 109 (197)
T 2rk3_A 75 GNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109 (197)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred CchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 974 2 3445555666788999999886
No 186
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=22.78 E-value=23 Score=32.61 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCccEEEEEe-Cc-hH---------HHHHHHhcCCCCCcEEEEcCCC
Q 008048 331 TKVDLVVTLG-GD-GT---------VLWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 331 ~~~DLVIvLG-GD-GT---------lL~AAr~~~~~~~PILGINlG~ 366 (579)
.++|.||.-| || ++ ++...+.+...++||+||-+|.
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~ 87 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGM 87 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhH
Confidence 4589998877 44 32 2334444434578999999874
No 187
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=22.74 E-value=43 Score=29.72 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGGD 342 (579)
.++|+|+.-++-... + +....+.|.. .++++.+-......+.. ..... +. .+..+.+. ..++|.||+-||.
T Consensus 2 ~~ki~il~~~g~~~~-e-~~~~~~~l~~-ag~~v~~vs~~~~~v~~-~~g~~-i~---~~~~~~~~~~~~~D~livpGG~ 73 (168)
T 3l18_A 2 SMKVLFLSADGFEDL-E-LIYPLHRIKE-EGHEVYVASFQRGKITG-KHGYS-VN---VDLTFEEVDPDEFDALVLPGGK 73 (168)
T ss_dssp CCEEEEECCTTBCHH-H-HHHHHHHHHH-TTCEEEEEESSSEEEEC-TTSCE-EE---ECEEGGGCCGGGCSEEEECCBS
T ss_pred CcEEEEEeCCCccHH-H-HHHHHHHHHH-CCCEEEEEECCCCEEec-CCCcE-Ee---ccCChhHCCHhhCCEEEECCCc
Confidence 468898887654432 2 2335556654 46665442111111100 00000 00 01111222 2368999999998
Q ss_pred hHH--------HHHHHhcCCCCCcEEEEcCCC
Q 008048 343 GTV--------LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 343 GTl--------L~AAr~~~~~~~PILGINlG~ 366 (579)
|+. +...+.+.....||.+|-.|.
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~ 105 (168)
T 3l18_A 74 APEIVRLNEKAVMITRRMFEDDKPVASICHGP 105 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred CHHHhccCHHHHHHHHHHHHCCCEEEEECHhH
Confidence 763 344555566788999999885
No 188
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=22.65 E-value=2.8e+02 Score=22.81 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=24.6
Q ss_pred CCCcEEEEcCCCCccCcCCCcchHHHHHHHHH
Q 008048 355 PVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVL 386 (579)
Q Consensus 355 ~~~PILGINlG~LGFLt~~~~edi~~~L~~il 386 (579)
..+|++=|+-|+ ++.+++++++.+.|.++.
T Consensus 54 ~tVP~I~i~Dg~--~l~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 54 RTVPTVKFADGS--TLTNPSADEVKAKLVKIA 83 (92)
T ss_dssp SCSCEEEETTSC--EEESCCHHHHHHHHHHHH
T ss_pred CEeCEEEEeCCE--EEeCCCHHHHHHHHHHhc
Confidence 468988888887 577889999999998874
No 189
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=22.58 E-value=3e+02 Score=24.84 Aligned_cols=93 Identities=6% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhh-cCCcccccccc--cchHHHhhh--CCCccEE
Q 008048 263 PPQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLT-ESSYFSFVQTW--KDEKEILLL--HTKVDLV 336 (579)
Q Consensus 263 ~pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~-~~~~~~~i~~~--~~~~~~~~l--~~~~DLV 336 (579)
.+++|+|+.+- +++++.++++++.+.|. |.+++--..++..+.. .+-....+... ..+..+.++ ..++|+|
T Consensus 2 ~~~~ialsv~D~dK~~~v~~a~~~~~ll~---Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlV 78 (134)
T 2xw6_A 2 HMRALALIAHDAKKEEMVAFCQRHREVLA---RFPLVATGTTGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAV 78 (134)
T ss_dssp CSCEEEEEECGGGHHHHHHHHHHTHHHHT---TSCEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEE
T ss_pred CccEEEEEEecccHHHHHHHHHHHHHHhC---CCEEEEccHHHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEE
Confidence 46789998874 56788888888888773 6778877777765543 22221111111 112222222 4678999
Q ss_pred EEEeC---------chHHHHHHHhcCCCCCcEE
Q 008048 337 VTLGG---------DGTVLWAASIFKGPVPPIV 360 (579)
Q Consensus 337 IvLGG---------DGTlL~AAr~~~~~~~PIL 360 (579)
|-+=. ||-.|+-+-.. +++|++
T Consensus 79 Int~~pl~~~~h~~D~~~IrR~A~~--~~IP~~ 109 (134)
T 2xw6_A 79 IFFRDPLTAQPHEPDVQALLRVCDV--HGVPLA 109 (134)
T ss_dssp EEECCTTTCCTTSCCSHHHHHHHHH--HTCCEE
T ss_pred EEccCcccCCCccchHHHHHHHHHH--cCCCeE
Confidence 98644 55555433222 456764
No 190
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=22.42 E-value=1.4e+02 Score=29.41 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
..++|++|+. +++-....+..+.+.|++ .|+++..+..... ....+ ...+..+ ..++|.|++.+.
T Consensus 142 g~~~iaii~~-~~~~g~~~~~~~~~~l~~-~G~~v~~~~~~~~----~~~d~--------~~~~~~l~~~~~dav~~~~~ 207 (392)
T 3lkb_A 142 KGAKVALVVH-PSPFGRAPVEDARKAARE-LGLQIVDVQEVGS----GNLDN--------TALLKRFEQAGVEYVVHQNV 207 (392)
T ss_dssp TTCEEEEEEC-SSHHHHTTHHHHHHHHHH-HTCEEEEEEECCT----TCCCC--------HHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEEEe-CCchhhhHHHHHHHHHHH-cCCeEEEEEeeCC----CCcCH--------HHHHHHHHhcCCCEEEEecC
Confidence 3589999985 455556667777788876 4677653322111 00111 0111111 256899998777
Q ss_pred chHHH---HHHHhcCCCCCcEEEEc
Q 008048 342 DGTVL---WAASIFKGPVPPIVPFS 363 (579)
Q Consensus 342 DGTlL---~AAr~~~~~~~PILGIN 363 (579)
|.... ++++.. +..+|++|.+
T Consensus 208 ~~~a~~~~~~~~~~-g~~~~~~~~~ 231 (392)
T 3lkb_A 208 AGPVANILKDAKRL-GLKMRHLGAH 231 (392)
T ss_dssp HHHHHHHHHHHHHT-TCCCEEEECG
T ss_pred cchHHHHHHHHHHc-CCCceEEEec
Confidence 75544 444443 4568888753
No 191
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=22.39 E-value=1.8e+02 Score=28.08 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=48.8
Q ss_pred CCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEEEeC
Q 008048 263 PPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVTLGG 341 (579)
Q Consensus 263 ~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIvLGG 341 (579)
..++|++|+ .+.......+..+.+.|.+ .|+++........ ....+. ..+..+ ..++|.|++.+.
T Consensus 138 g~~~ia~i~-~~~~~g~~~~~~~~~~l~~-~g~~v~~~~~~~~----~~~d~~--------~~~~~l~~~~~d~v~~~~~ 203 (368)
T 4eyg_A 138 GIKKVATLT-SDYAPGNDALAFFKERFTA-GGGEIVEEIKVPL----ANPDFA--------PFLQRMKDAKPDAMFVFVP 203 (368)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHH-TTCEEEEEEEECS----SSCCCH--------HHHHHHHHHCCSEEEEECC
T ss_pred CCCEEEEEe-cCchHhHHHHHHHHHHHHH-cCCEEEEEEeCCC----CCCcHH--------HHHHHHHhcCCCEEEEecc
Confidence 458999998 4566666677778888876 4676643321110 001111 111111 246899999776
Q ss_pred chH---HHHHHHhcCCC--CCcEEEEc
Q 008048 342 DGT---VLWAASIFKGP--VPPIVPFS 363 (579)
Q Consensus 342 DGT---lL~AAr~~~~~--~~PILGIN 363 (579)
|.. ++++++...-. .+|++|.+
T Consensus 204 ~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 204 AGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp TTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred chHHHHHHHHHHHcCCCcCCceEEecC
Confidence 654 44555544311 27899876
No 192
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.09 E-value=2.6e+02 Score=21.93 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=38.8
Q ss_pred CccEEEE---E-eCchH-HHHHHHhcC-CCCCcEEEEc-------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 332 KVDLVVT---L-GGDGT-VLWAASIFK-GPVPPIVPFS-------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 332 ~~DLVIv---L-GGDGT-lL~AAr~~~-~~~~PILGIN-------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
.+|+||+ + |.||. +++..+... ...+||+-+. .|-.|||. +++++++...|.+++.+.
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 45 KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 4788876 2 55773 455555432 2467887763 36677765 488889999999888753
No 193
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=22.00 E-value=2.1e+02 Score=26.74 Aligned_cols=109 Identities=9% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCCEEEEEEcCCC---hhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh--hCCCccEEE
Q 008048 263 PPQTVVILTKPNS---NSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL--LHTKVDLVV 337 (579)
Q Consensus 263 ~pk~V~IV~Kp~~---~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~--l~~~~DLVI 337 (579)
+.++|||+..... +-...+...+.+.+.+ .|+.+.+-...... . ....+.. ...++|-||
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~---~-----------~~~~~~~~l~~~~vdgiI 71 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-TQYHLVVTPHIHAK---D-----------SMVPIRYILETGSADGVI 71 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-SSCEEEECCBSSGG---G-----------TTHHHHHHHHHTCCSEEE
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-cCCEEEEecCCcch---h-----------HHHHHHHHHHcCCccEEE
Confidence 3578999987433 5566677777777765 57877764321100 0 0011111 136799999
Q ss_pred EEeCchHHHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcchH---HHHHHHHHc
Q 008048 338 TLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHY---KDYLDSVLR 387 (579)
Q Consensus 338 vLGGDGTlL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~edi---~~~L~~il~ 387 (579)
+++.+.+- .....+...++|++-++...-+. +.-+..++. ..+.+.+++
T Consensus 72 i~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~ 124 (288)
T 3gv0_A 72 ISKIEPND-PRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQ 124 (288)
T ss_dssp EESCCTTC-HHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHH
T ss_pred EecCCCCc-HHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHH
Confidence 99876432 22233334678999888643221 122334443 345556554
No 194
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=21.81 E-value=52 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.0
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 008048 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (579)
++++.|.+-+|-.-.++|+++|++
T Consensus 1 hsdGTFTsDySk~Ld~~~akdFv~ 24 (42)
T 2b4n_A 1 YAEGTFISDYSIAMDKIHQQDFVN 24 (42)
T ss_dssp CCCCTTTTCCCTTHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999853
No 195
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=21.71 E-value=25 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=20.9
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 008048 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (579)
|+++.|.+.+|..-.++|+++||+
T Consensus 1 HaDGtFTsd~s~~l~~~aak~fl~ 24 (33)
T 2l63_A 1 HADGSFSDEMNTILDNLAARDFIN 24 (33)
T ss_dssp CCCSHHHHGGGHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999874
No 196
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=21.52 E-value=49 Score=34.38 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhc-CCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEEEeCc
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQ-KKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGD 342 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~-~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIvLGGD 342 (579)
+++++++....-. ..-+.+|+++|+++ +.+.+.. .+..+. .+.+......++...+|++|++||-
T Consensus 170 ~~kv~~vsQTT~s--~~~~~~iv~~L~~r~p~i~~~~----------~ntIC~--AT~~RQ~av~~lA~~vD~miVVGg~ 235 (328)
T 3szu_A 170 EEKLSFMTQTTLS--VDDTSDVIDALRKRFPKIVGPR----------KDDICY--ATTNRQEAVRALAEQAEVVLVVGSK 235 (328)
T ss_dssp TTSEEEEECTTSC--HHHHHHHHHHHHHHCTTCBCCS----------SCSCCH--HHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred CCeEEEEEecCCc--HHHHHHHHHHHHHhCcccccCC----------CCCcCH--HHHHHHHHHHHHHHhCCEEEEeCCC
Confidence 5789999987654 34578899999863 2221100 001110 0111123455677789999999994
Q ss_pred ----hHHH-HHHHhcCCCCCcEEEEc------------CCCCccCcCCC-cch-HHHHHHHHHc-CCceEE
Q 008048 343 ----GTVL-WAASIFKGPVPPIVPFS------------LGSLGFMTPFH-SEH-YKDYLDSVLR-GPISIT 393 (579)
Q Consensus 343 ----GTlL-~AAr~~~~~~~PILGIN------------lG~LGFLt~~~-~ed-i~~~L~~il~-G~y~Ie 393 (579)
.+=| ..++.. ++|..=|. ..++|.-+.-+ |+. +++.++.+.. |...++
T Consensus 236 nSSNT~rL~eia~~~---g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~~l~~~~~~~v~ 303 (328)
T 3szu_A 236 NSSNSNRLAELAQRM---GKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAI 303 (328)
T ss_dssp TCHHHHHHHHHHHHT---TCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 3334 444433 23444442 23555555543 444 3455555543 333433
No 197
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.51 E-value=1.4e+02 Score=24.00 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=39.5
Q ss_pred CCccEEEE----EeCchH-HHHHHHhcC-CCCCcEEEEc------------CCCCccCc-CCCcchHHHHHHHHHcCC
Q 008048 331 TKVDLVVT----LGGDGT-VLWAASIFK-GPVPPIVPFS------------LGSLGFMT-PFHSEHYKDYLDSVLRGP 389 (579)
Q Consensus 331 ~~~DLVIv----LGGDGT-lL~AAr~~~-~~~~PILGIN------------lG~LGFLt-~~~~edi~~~L~~il~G~ 389 (579)
..+|+||+ -|.||. +++..+... ...+||+-+. .|--+||. +++++++...|.+++.+.
T Consensus 46 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 46 HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 35788887 356773 455555542 2467887664 35556654 588999999999998764
No 198
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=21.31 E-value=2.9e+02 Score=27.38 Aligned_cols=87 Identities=9% Similarity=-0.028 Sum_probs=48.5
Q ss_pred cCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhh-CCCccEEEE
Q 008048 260 WESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLL-HTKVDLVVT 338 (579)
Q Consensus 260 W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l-~~~~DLVIv 338 (579)
|....++|+|++- ++.-....+..+.+.+++ .|++|........ ....+. ..+..+ ..++|.|++
T Consensus 160 ~~~~~~~vail~~-~~~~g~~~~~~~~~~~~~-~g~~vv~~~~~~~----~~~d~~--------~~l~~i~~~~~d~v~~ 225 (419)
T 3h5l_A 160 FSRPNNKIAIITG-PGIYSVNIANAIRDGAGE-YGYDVSLFETVAI----PVSDWG--------PTLAKLRADPPAVIVV 225 (419)
T ss_dssp CCCSSSEEEEEEC-SSHHHHHHHHHHHHHGGG-GTCEEEEEEECCS----SCSCCH--------HHHHHHHHSCCSEEEE
T ss_pred ccCCCCEEEEEEc-CcchhHHHHHHHHHHHHH-cCCeEEEEecCCC----CCccHH--------HHHHHHHhcCCCEEEE
Confidence 5546789999985 566666777777777765 5777654332211 111111 112222 257898888
Q ss_pred EeCch----HHHHHHHhcCCCCCcEEE
Q 008048 339 LGGDG----TVLWAASIFKGPVPPIVP 361 (579)
Q Consensus 339 LGGDG----TlL~AAr~~~~~~~PILG 361 (579)
.|-.+ .+++.++.. +...|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~-g~~~~~~~ 251 (419)
T 3h5l_A 226 THFYPQDQALFMNQFMTD-PTNSLVYL 251 (419)
T ss_dssp CCCCHHHHHHHHHHHTTS-CCSCEEEE
T ss_pred ccccCchHHHHHHHHHHc-CCCceEEe
Confidence 75332 355555554 33556665
No 199
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.08 E-value=2.5e+02 Score=26.63 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=53.6
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccEEEEEeC
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DLVIvLGG 341 (579)
.++|||+... .++-...+..-+.+.+.+ .|+.+.+-..-.. .... ...+. -+..++|.||+.+-
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~-~~~~------------~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQE-AGYKTDLQYADDD-IPNQ------------LSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHH-TTCEEEEEECTTC-HHHH------------HHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHH-cCCEEEEeeCCCC-HHHH------------HHHHHHHHHcCCCEEEEEcC
Confidence 4689998874 466666777778888876 5787765321100 0000 00011 12357999999999
Q ss_pred chHH-HHHHHhcCCCCCcEEEEcCCC
Q 008048 342 DGTV-LWAASIFKGPVPPIVPFSLGS 366 (579)
Q Consensus 342 DGTl-L~AAr~~~~~~~PILGINlG~ 366 (579)
|.+. -...+.+...++||+-|+...
T Consensus 69 ~~~~~~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 69 DGTTLSDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp SGGGGHHHHHHHHHTTCEEEEESSCC
T ss_pred CchhHHHHHHHHHHCCCCEEEECCCC
Confidence 8653 233444555689999998743
No 200
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=20.94 E-value=2.3e+02 Score=26.48 Aligned_cols=88 Identities=19% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCEEEEEEc-CCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEe
Q 008048 264 PQTVVILTK-PNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLG 340 (579)
Q Consensus 264 pk~V~IV~K-p~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLG 340 (579)
..+|+++.. ..++-...+..-+.+.+.+ .|+++.+ ...... .... ...+.. +..++|.||+.+
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiii~~ 69 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKE-FNLNASQVGPSSTD-APQQ------------VKIIEDLIARKVDAITIVP 69 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHH-TTEEEEEECCSSSC-HHHH------------HHHHHHHHHTTCSEEEECC
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHH-cCCEEEEECCCCCC-HHHH------------HHHHHHHHHcCCCEEEEec
Confidence 468899875 3555556666777777765 5788753 321000 0000 001111 235799999999
Q ss_pred CchHHH-HHHHhcCCCCCcEEEEcCC
Q 008048 341 GDGTVL-WAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 341 GDGTlL-~AAr~~~~~~~PILGINlG 365 (579)
.|.+-+ ...+.+...++|++-++..
T Consensus 70 ~~~~~~~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 70 NDANVLEPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred CChHHHHHHHHHHHHCCCeEEEEecC
Confidence 886543 3345554567899999864
No 201
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=20.83 E-value=3.3e+02 Score=21.94 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCccEEEE----EeCch-HHHHHHHhc---CCCCCcEEEEc-------------CC-CCccCcC-CCcchHHHHHHHHHc
Q 008048 331 TKVDLVVT----LGGDG-TVLWAASIF---KGPVPPIVPFS-------------LG-SLGFMTP-FHSEHYKDYLDSVLR 387 (579)
Q Consensus 331 ~~~DLVIv----LGGDG-TlL~AAr~~---~~~~~PILGIN-------------lG-~LGFLt~-~~~edi~~~L~~il~ 387 (579)
..+|+||+ -|+|| .+++..+.. ....+||+-+. .| -.+||.. ++++++...|.....
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 45898887 35677 355555552 23567887764 35 6667554 889999999999888
Q ss_pred CCc
Q 008048 388 GPI 390 (579)
Q Consensus 388 G~y 390 (579)
|..
T Consensus 139 ~~~ 141 (146)
T 3ilh_A 139 EGH 141 (146)
T ss_dssp C--
T ss_pred hcc
Confidence 754
No 202
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=20.80 E-value=1.8e+02 Score=27.27 Aligned_cols=85 Identities=13% Similarity=-0.066 Sum_probs=50.3
Q ss_pred CCEEEEEEcC-----CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEE
Q 008048 264 PQTVVILTKP-----NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVV 337 (579)
Q Consensus 264 pk~V~IV~Kp-----~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVI 337 (579)
.++||++... .++-...+...+.+.+.+ .|+.+.+-..-. +.. . ...-+.. ...++|.||
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~------~~~-----~--~~~~~~~l~~~~vdgiI 69 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VNYFVLPFPFSE------DRS-----Q--IDIYRDLIRSGNVDGFV 69 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TTCEEEECCCCS------STT-----C--CHHHHHHHHTTCCSEEE
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH-cCCEEEEEeCCC------chH-----H--HHHHHHHHHcCCCCEEE
Confidence 4678888754 566667777888888876 578776632100 000 0 0011111 246799999
Q ss_pred EEeCch--HHHHHHHhcCCCCCcEEEEcCC
Q 008048 338 TLGGDG--TVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 338 vLGGDG--TlL~AAr~~~~~~~PILGINlG 365 (579)
+.+.|. ..+..+ ...++|++-++..
T Consensus 70 i~~~~~~~~~~~~l---~~~~iPvV~~~~~ 96 (287)
T 3bbl_A 70 LSSINYNDPRVQFL---LKQKFPFVAFGRS 96 (287)
T ss_dssp ECSCCTTCHHHHHH---HHTTCCEEEESCC
T ss_pred EeecCCCcHHHHHH---HhcCCCEEEECCc
Confidence 998764 344333 3356899999764
No 203
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.73 E-value=3.2e+02 Score=21.68 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=55.4
Q ss_pred CCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhhhCCCccEEEE----E
Q 008048 264 PQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT----L 339 (579)
Q Consensus 264 pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVIv----L 339 (579)
+.+|+||-. ++.. ...+..+|.+ .|+.|..-.+..+.+. .+. ...+|+||+ -
T Consensus 3 ~~~ilivdd--~~~~---~~~l~~~L~~-~g~~v~~~~~~~~a~~----------------~l~--~~~~dlii~D~~l~ 58 (127)
T 3i42_A 3 LQQALIVED--YQAA---AETFKELLEM-LGFQADYVMSGTDALH----------------AMS--TRGYDAVFIDLNLP 58 (127)
T ss_dssp CEEEEEECS--CHHH---HHHHHHHHHH-TTEEEEEESSHHHHHH----------------HHH--HSCCSEEEEESBCS
T ss_pred cceEEEEcC--CHHH---HHHHHHHHHH-cCCCEEEECCHHHHHH----------------HHH--hcCCCEEEEeCCCC
Confidence 457777743 3333 4455666654 4676654332222110 011 134788887 3
Q ss_pred eCch-HHHHHHHhcC-CCCCcEEEEcC------------CCCccCc-CCCcchHHHHHHHHHcC
Q 008048 340 GGDG-TVLWAASIFK-GPVPPIVPFSL------------GSLGFMT-PFHSEHYKDYLDSVLRG 388 (579)
Q Consensus 340 GGDG-TlL~AAr~~~-~~~~PILGINl------------G~LGFLt-~~~~edi~~~L~~il~G 388 (579)
|.|| .+++..+... ...+||+-+.. |-.+||. +++++++.+.+.....+
T Consensus 59 ~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 59 DTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp SSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 5677 4556666542 45678877643 4455644 47888888888776554
No 204
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=20.71 E-value=23 Score=26.01 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCCCCccccccccccHHHHHHHhh
Q 008048 23 HSENGFGDSLSLLQSEKAVQEILQ 46 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~ 46 (579)
|+++.|.+.+|-.-.+.|++++||
T Consensus 1 Hsdg~FTs~yskyl~~~~ak~fl~ 24 (39)
T 2d2p_A 1 HSDGIFTDSYSRYRKQMAVKKYLA 24 (39)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999985
No 205
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.62 E-value=1.7e+02 Score=26.80 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=59.9
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGG 341 (579)
.++||++... .++-...+...+.+.+.+ .|+.+.+-..-.. .... ..-+.. ...++|-||+.+.
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~-~~~~------------~~~~~~l~~~~vdgiIi~~~ 67 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARA-RGYQLLIASSDDQ-PDSE------------RQLQQLFRARRCDALFVASC 67 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHH-TTCEEEEEECTTC-HHHH------------HHHHHHHHHTTCSEEEECCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHH-CCCEEEEEeCCCC-HHHH------------HHHHHHHHHcCCCEEEEecC
Confidence 3688998864 566666777777778876 5777765321100 0000 000111 2357999999988
Q ss_pred chHHHHHHHhcCCCCCcEEEEcCCCCcc-CcCCCcch---HHHHHHHHHcC
Q 008048 342 DGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEH---YKDYLDSVLRG 388 (579)
Q Consensus 342 DGTlL~AAr~~~~~~~PILGINlG~LGF-Lt~~~~ed---i~~~L~~il~G 388 (579)
+..--.....+...++|++-++...-+. +.-+..++ ...+.+.+.+-
T Consensus 68 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~ 118 (272)
T 3o74_A 68 LPPEDDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSS 118 (272)
T ss_dssp CCSSCCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHC
Confidence 7321122223334578999988643221 22233343 33456666653
No 206
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.43 E-value=2.6e+02 Score=26.15 Aligned_cols=87 Identities=8% Similarity=-0.133 Sum_probs=53.0
Q ss_pred CCEEEEEEcC-CChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHhh-hCCCccEEEEEeC
Q 008048 264 PQTVVILTKP-NSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILL-LHTKVDLVVTLGG 341 (579)
Q Consensus 264 pk~V~IV~Kp-~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~~-l~~~~DLVIvLGG 341 (579)
+.+||++... .++-...+..-+.+.+.+ .|+++.+-... . .... ...+.. +..++|.||+.+.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~-~-~~~~------------~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKD-LGFEVIKIAVP-D-GEKT------------LNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHH-HTEEEEEEECC-S-HHHH------------HHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHH-cCCEEEEeCCC-C-HHHH------------HHHHHHHHHcCCCEEEEeCC
Confidence 4688888764 566666677777777776 47776653210 0 0000 001111 2357999999999
Q ss_pred chHHHH-HHHhcCCCCCcEEEEcCC
Q 008048 342 DGTVLW-AASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 342 DGTlL~-AAr~~~~~~~PILGINlG 365 (579)
|.+... ..+.+...++||+-++..
T Consensus 67 ~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 67 DPKLGSAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEESSC
T ss_pred CchhhHHHHHHHHHCCCcEEEeCCC
Confidence 876543 345555678999999853
No 207
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.28 E-value=2.3e+02 Score=26.72 Aligned_cols=110 Identities=6% Similarity=-0.004 Sum_probs=60.5
Q ss_pred CCCEEEEEEc------CCChhHHHHHHHHHHHHHhcCCeEEEEccchhHhhhhcCCcccccccccchHHHh-hhCCCccE
Q 008048 263 PPQTVVILTK------PNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEIL-LLHTKVDL 335 (579)
Q Consensus 263 ~pk~V~IV~K------p~~~~~~~l~~eii~~L~e~~gi~V~ve~~va~~l~~~~~~~~~i~~~~~~~~~~-~l~~~~DL 335 (579)
+.++|||+.. ..++-...+...+.+.+.+ .|+.+.+-..-.... .+ ..-+. -...++|-
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~-~~------------~~~~~~l~~~~vdG 71 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ-HGYGTQTTVSNNMND-LM------------DEVYKMIKQRMVDA 71 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT-TTCEEEECCCCSHHH-HH------------HHHHHHHHTTCCSE
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH-CCCEEEEEcCCCChH-HH------------HHHHHHHHhCCcCE
Confidence 3568999973 3566667777888888875 578877643211000 00 00011 12467999
Q ss_pred EEEEeCchHHHHHHHhcCCCCCcEEEEcCCCCcc---CcCCCcch---HHHHHHHHHc
Q 008048 336 VVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF---MTPFHSEH---YKDYLDSVLR 387 (579)
Q Consensus 336 VIvLGGDGTlL~AAr~~~~~~~PILGINlG~LGF---Lt~~~~ed---i~~~L~~il~ 387 (579)
||+++.+.+- .....+...++|++-|+...-+. +.-+..++ ...+.+.+++
T Consensus 72 iI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~ 128 (295)
T 3hcw_A 72 FILLYSKEND-PIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIE 128 (295)
T ss_dssp EEESCCCTTC-HHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHH
T ss_pred EEEcCcccCh-HHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHH
Confidence 9999876431 12223334578999888643322 22233344 3345666554
No 208
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=20.19 E-value=1.5e+02 Score=33.76 Aligned_cols=92 Identities=16% Similarity=0.043 Sum_probs=54.4
Q ss_pred ecCCCCCEEEEEEcCCChhHHHHHHHHHHHHHhcCCeEEEE-ccchhHhhhhcCCcccccccccchHHHhhhCCCccEEE
Q 008048 259 KWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVV 337 (579)
Q Consensus 259 ~W~~~pk~V~IV~Kp~~~~~~~l~~eii~~L~e~~gi~V~v-e~~va~~l~~~~~~~~~i~~~~~~~~~~~l~~~~DLVI 337 (579)
.|...-++|+|+.-..+.--..-+..+++.|++ .|++|.+ .+.... ... .++.. .....+|.||
T Consensus 524 ~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~-----~vD----~t~~~-----~~s~~fDAVv 588 (688)
T 2iuf_A 524 LAKLDGLKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXAN-----NVD----ETYSA-----SDAVQFDAVV 588 (688)
T ss_dssp CSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCT-----TCC----EESTT-----CCGGGCSEEE
T ss_pred CCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCc-----ccc----cchhc-----CCccccCeEE
Confidence 334446899999874232223346778888876 4676654 332111 000 01111 0134689999
Q ss_pred EEeC-------------------------chHHHHHHHhcCCCCCcEEEEcCC
Q 008048 338 TLGG-------------------------DGTVLWAASIFKGPVPPIVPFSLG 365 (579)
Q Consensus 338 vLGG-------------------------DGTlL~AAr~~~~~~~PILGINlG 365 (579)
+-|| ||.++..++.+...+.||..|--|
T Consensus 589 lPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~a 641 (688)
T 2iuf_A 589 VADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSG 641 (688)
T ss_dssp ECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGG
T ss_pred ecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECch
Confidence 9999 344777777777778899888654
No 209
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=20.01 E-value=1.9e+02 Score=25.25 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=40.6
Q ss_pred HHHhhhCCCccEEEEEe---Cch-HHHHHHHhcCCCCCcEEEEcC--------CCCccCcCC-CcchHHHHHHHHHc
Q 008048 324 KEILLLHTKVDLVVTLG---GDG-TVLWAASIFKGPVPPIVPFSL--------GSLGFMTPF-HSEHYKDYLDSVLR 387 (579)
Q Consensus 324 ~~~~~l~~~~DLVIvLG---GDG-TlL~AAr~~~~~~~PILGINl--------G~LGFLt~~-~~edi~~~L~~il~ 387 (579)
.++..+...+|++|..- |=| +++-|.. .++||+.-+. |..||+.+. +++++.++|..+++
T Consensus 107 ~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a----~G~PvI~~~~~~~~e~~~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 107 EFVRELYGSVDFVIIPSYFEPFGLVALEAMC----LGAIPIASAVGGLRDIITNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp HHHHHHHTTCSEEEECCSCCSSCHHHHHHHH----TTCEEEEESCHHHHHHCCTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEECCCCCCccHHHHHHHH----CCCCEEEeCCCChHHHcCCCceEEecCCCHHHHHHHHHHHHh
Confidence 34566778899998754 223 3333332 4679998876 456787764 77888888888876
Done!