RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 008048
(579 letters)
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 950 bits (2458), Expect = 0.0
Identities = 407/558 (72%), Positives = 451/558 (80%), Gaps = 52/558 (9%)
Query: 22 PHSENGFGDSLSLLQSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAA 81
+NGF DSLSL SEKAVQE+LQQTP+ +DDHL+EFSEALRTVAKALRR AEGKA A
Sbjct: 1 SQPDNGFSDSLSLFHSEKAVQELLQQTPIQDTDDHLVEFSEALRTVAKALRRVAEGKALA 60
Query: 82 QAEAAEWKRRFELERARNLRLENKGNGICEKLRSWWMQTSVNNGMGLIRLVLPCLLCWEI 141
QAEAAEWKR++ELERARN +LE+K
Sbjct: 61 QAEAAEWKRKYELERARNQQLEHKE----------------------------------- 85
Query: 142 WKEQDRRLYEEQSFKENNSVSEGGRLENSTSQPVLLNQEREHSNRACLEHGICSHEVLQD 201
S E N S RLEN +QP+L + C GICSHEVLQD
Sbjct: 86 -----------LSSGECNEESNDQRLENLANQPML----YNEAINCCGMEGICSHEVLQD 130
Query: 202 -AKDVDSNMVNNKIMKKASFKLSWRCKGENSDQHKHDIVYFERGNITTAERSSKQISLKW 260
+ D D+ V NK+M+KASFKLSW CKG+ SDQHKHDIV FERGNITTAERSSKQISLKW
Sbjct: 131 GSTDSDNRSVLNKVMRKASFKLSWGCKGDKSDQHKHDIVSFERGNITTAERSSKQISLKW 190
Query: 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTW 320
ES PQTV+I+TKPNS SV++LCA+MVRWLREQK LNIYVEPRV+ ELL+ESSYF+FVQTW
Sbjct: 191 ESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTW 250
Query: 321 KDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKD 380
+DEKEILLLHTKVDLV+TLGGDGTVLWAAS+FKGPVPP+VPFS+GSLGFMTPFHSE Y+D
Sbjct: 251 EDEKEILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRD 310
Query: 381 YLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYC 440
LD++L+GPISITLR+RLQCH+IRDAAKNE E E+PILVLNEVTIDRGISS+LTNLECYC
Sbjct: 311 CLDAILKGPISITLRHRLQCHIIRDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYC 370
Query: 441 DNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEH 500
DNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPE+
Sbjct: 371 DNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEY 430
Query: 501 VTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHD 560
VT+RVQ+PFNSR AWASFDGKDRKQL+ GDALVCSMAPWPVPTACQV+ST+DF RSIHD
Sbjct: 431 VTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQVESTNDFLRSIHD 490
Query: 561 GLHWNLRKTQSSFDVPLD 578
GLHWNLRKTQ SFD P
Sbjct: 491 GLHWNLRKTQ-SFDGPRS 507
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 306 bits (786), Expect = 3e-93
Identities = 151/329 (45%), Positives = 217/329 (65%), Gaps = 15/329 (4%)
Query: 252 SSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTES 311
S++Q L W+S P+TV++L K ++ ++ +L Q+K+N+ VEP V ++
Sbjct: 666 STQQQMLMWKSTPKTVLLLKKLGQELME-EAKEVASFLYHQEKMNVLVEPDVH-DIFARI 723
Query: 312 SYFSFVQTW--KDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF 369
F FVQT+ +D + LH +VD V LGGDG +L A+++F+G VPP+V F+LGSLGF
Sbjct: 724 PGFGFVQTFYSQDTSD---LHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGF 780
Query: 370 MTPFHSEHYKDYLDSVLRGP-----ISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVT 424
+T + E ++ L V+ G + ITLR RL+C + R+ ++ D VLNEV
Sbjct: 781 LTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFD---VLNEVV 837
Query: 425 IDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTP 484
+DRG + YL+ +ECY + +T VQGDG+I++T +GSTAYS AAGGSMVHP VP +LFTP
Sbjct: 838 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTP 897
Query: 485 ICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPT 544
ICPHSLSFRP+ILP+ L ++IP ++RS AW SFDGK R+QL+ GD++ SM+ P+PT
Sbjct: 898 ICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPT 957
Query: 545 ACQVDSTDDFFRSIHDGLHWNLRKTQSSF 573
+ D T D+FRS+ L+WN R Q +
Sbjct: 958 VNKSDQTGDWFRSLIRCLNWNERLDQKAL 986
>gnl|CDD|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism].
Length = 281
Score = 217 bits (554), Expect = 2e-66
Identities = 101/301 (33%), Positives = 154/301 (51%), Gaps = 21/301 (6%)
Query: 265 QTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEK 324
+ V I+ +P+ + A+ + + K + + V+ + EL + Y +
Sbjct: 1 KKVGIVGRPDKPEALKI-AKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEE----- 54
Query: 325 EILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDS 384
K DL+V LGGDGT+L AA + P++ +LG LGF+T F + + LD+
Sbjct: 55 -------KADLIVVLGGDGTLLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDA 107
Query: 385 VLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSF 444
+L G I R L+ V R + L LNEV I RG + + E Y D+ F
Sbjct: 108 LLEGEYRIEERLLLEVSVNRGDIRRA-------LALNEVVIHRGSPAKMIEFEVYIDDEF 160
Query: 445 VTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 504
+GDGLI+ST +GSTAY+L+AGG ++HP + I TPICPHSLSFRPL+LP T+R
Sbjct: 161 FESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVR 220
Query: 505 VQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHW 564
+++ + A DG++ + PGD + +P+ ++ S DDFF + L W
Sbjct: 221 IEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFI-RLRSYDDFFERLRSKLIW 279
Query: 565 N 565
Sbjct: 280 G 280
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 185 bits (473), Expect = 5e-55
Identities = 92/227 (40%), Positives = 124/227 (54%), Gaps = 13/227 (5%)
Query: 324 KEILLLHTK------VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEH 377
+ +LL T+ VDL+V LGGDGT L AA + PI+ + G+LGF+T F E
Sbjct: 21 QRLLLDATREMVEEGVDLIVVLGGDGTALDAARLLGDHDIPILGINTGTLGFLTEFSPEE 80
Query: 378 YKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLE 437
LD++L G I R L V R + I D L LNEV I G +S + +E
Sbjct: 81 AAKLLDALLEGEYKIEKRELLDVIVRRS---KRLLIVD--LALNEVVIIGGPASTMIEIE 135
Query: 438 CYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 497
Y D + ++GDGLI+ST +GSTAYSL+AGG ++ P V IL TPICPHSLS RP+++
Sbjct: 136 VYIDGELLESIRGDGLIVSTPTGSTAYSLSAGGPIISPGVLAILLTPICPHSLSSRPIVV 195
Query: 498 PEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPT 544
P LR I +S+ A DG+ L PGD + +P+
Sbjct: 196 PSSSKLR--IRLDSKEEALLVLDGQRELDLKPGDEVTVRKSPYKPKF 240
>gnl|CDD|179379 PRK02155, ppnK, NAD(+)/NADH kinase family protein; Provisional.
Length = 291
Score = 147 bits (374), Expect = 3e-40
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 15/237 (6%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
+ DL V LGGDGT+L P++ + G LGF+T + ++ L +L G
Sbjct: 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYE 122
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPI---LVLNEVTIDRGISSYLTNLECYCDNSFVTCV 448
R L+ V+RD +PI L N+V ++R S + L D F+
Sbjct: 123 EEERMLLEARVVRD--------GEPIFHALAFNDVVVNRSGFSGMVELRVSVDGRFMYNQ 174
Query: 449 QGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIP 508
+ DGLI++T +GSTAY+L+AGG ++HPQ+PG + PI PH+LS RP++LP+ + +QI
Sbjct: 175 RSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDDSEVAIQI- 233
Query: 509 FNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWN 565
+FD + L GD + +P V V + ++ ++ LHWN
Sbjct: 234 -VGGRDVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHPVGYS--YYATLRKKLHWN 287
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 148 bits (376), Expect = 2e-38
Identities = 88/333 (26%), Positives = 158/333 (47%), Gaps = 41/333 (12%)
Query: 204 DVDSNMVNNK--IMKKASFKLSWRCKGENSDQHKHDIVYFERGNITTAERSSKQISLKWE 261
+ + +N K I +K S S N HK + F GN KW
Sbjct: 249 NKNGKPLNMKLDINEKTSVICS------NEILHKKLVGIF--GN-------------KWR 287
Query: 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWK 321
P I+++ ++ L +++++L + K + +E + +L
Sbjct: 288 IKPTKFGIVSRIDNEEAINLALKIIKYL-DSKGIPYELESFLYNKL---------KNRLN 337
Query: 322 DEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDY 381
+E ++ ++ ++++GGDGTVL A+ + G PI+ ++G++GF+T F E
Sbjct: 338 EECNLIDDIEEISHIISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKA 397
Query: 382 LDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCD 441
+DS++ G I R +L +++D ++ + LNEV I + + + E Y +
Sbjct: 398 IDSIISGEYEIEKRTKLSGFILKDG--HQNILPS---ALNEVVITTKNPAKMLHFEVYVN 452
Query: 442 NSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHV 501
V V+ DG+I+ST +GSTAYSL+AGG +V P V G + PICP LS RPL++ +
Sbjct: 453 GELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRPLVVSANS 512
Query: 502 TLRVQIPFNSRSPAWASFDGKDRKQLAPGDALV 534
+++++ + A DG + GD ++
Sbjct: 513 EIKIKL---LKKSALVVIDGSIEFEAKKGDEII 542
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 140 bits (356), Expect = 1e-37
Identities = 87/307 (28%), Positives = 147/307 (47%), Gaps = 27/307 (8%)
Query: 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKE 325
+ ++ + S+SV ++ +L ++ L + ++ AE+L +QT +
Sbjct: 6 NIGLIGRLGSSSVVETLRRLKDFLLDRG-LEVILDEET-AEVLPGHG----LQTVSRK-- 57
Query: 326 ILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSV 385
LL DLV+ +GGDG++L AA P++ + G LGF+T + + L V
Sbjct: 58 --LLGEVCDLVIVVGGDGSLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEV 115
Query: 386 LRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFV 445
L G R L+ V R E+ + LN+V + G S+ + E Y D FV
Sbjct: 116 LDGHYQEEERFLLEAEVRRG---GEVIGQG--DALNDVVLHPGKSTRMIEFELYIDGQFV 170
Query: 446 TCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRV 505
+ DGLI+ST +GSTAY+L+ GG ++HP++ I+ P+ PH+LS RP+++ + +++
Sbjct: 171 CSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEIKI 230
Query: 506 QI-PFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPV----PTACQVDSTDDFFRSIHD 560
I N P S DG++ LAPGD + P + P +++ +
Sbjct: 231 VISKDNRTYPR-VSCDGQNSVTLAPGDTVTIRKKPQKLRLIHPLD------YNYYETCRT 283
Query: 561 GLHWNLR 567
L W R
Sbjct: 284 KLGWGSR 290
>gnl|CDD|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 296
Score = 138 bits (350), Expect = 5e-37
Identities = 90/312 (28%), Positives = 140/312 (44%), Gaps = 24/312 (7%)
Query: 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYV-EPRVRAELLTESSYFSFVQT 319
SP + I+T+PN+ +Q ++ +L +Q +Y+ E ++ +
Sbjct: 2 NSPFHNIGIVTRPNTPDIQDTAHTLITFL-KQHGFTVYLDEVGIKEGCIYTQDTVGCHIV 60
Query: 320 WKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYK 379
K E L DLV LGGDGT L A PI+ + G LGF+T E+
Sbjct: 61 NKTE-----LGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMT 115
Query: 380 DYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECY 439
D L VL G R ++ +IR+ E L LN+ + RG + + E +
Sbjct: 116 DKLLPVLEGKYLAEERILIEAALIREGK----TAERA-LALNDAVLSRGGAGQMIEFEVF 170
Query: 440 CDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPE 499
+ FV + DGLI+ST +GSTAYSLAAGG ++ + PICP S++ RP+ +P+
Sbjct: 171 VNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIAIPD 230
Query: 500 HVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPV----PTACQVDSTDDFF 555
T ++I A FDG+ + D + P+ PT Q +F
Sbjct: 231 --TSEIEILVTQGGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHPTDYQ------YF 282
Query: 556 RSIHDGLHWNLR 567
+++ LHW +
Sbjct: 283 KTLRQKLHWGEQ 294
>gnl|CDD|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 137 bits (348), Expect = 2e-36
Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 25/247 (10%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLG-SLGFMT-PFHSEHYKDYLDSVLRGP 389
+DL + LGGDGTVL AA PI+ ++G LGF+T P + D +
Sbjct: 57 LIDLAIVLGGDGTVLAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQEDR 116
Query: 390 ISITLRNRLQCHVIRDAAKNEIEIEDPILVLNE-----VTIDRGISSYLTNLECYCDNSF 444
+I R LQ V NE + + LN+ + DR + LE D
Sbjct: 117 YAIERRMMLQARVFEGDRSNEEPVSESYYALNDFYLKPASEDRSPTC---ILELEIDGEV 173
Query: 445 VTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLR 504
V QGDGLI+ST +GSTAY++AAGG ++HP + I+ TPICP SLS RP+++P R
Sbjct: 174 VDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPIVIPP--GSR 231
Query: 505 VQI-PFNSRSPA---WASFDGKDRKQLAPGDALVCSMAPWPVPTACQV---DSTDDFFRS 557
V I P W DG + PG V A P + + + ++R+
Sbjct: 232 VVIWPLGDYDLNIKLWK--DGVLATSIWPGQRCVIQKARHP----AKFIILEESYSYYRT 285
Query: 558 IHDGLHW 564
+ + LHW
Sbjct: 286 LREKLHW 292
>gnl|CDD|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 130 bits (329), Expect = 5e-34
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 21/219 (9%)
Query: 305 AELLTESSYFSF----------VQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKG 354
AE+L E + F T+ D +E L D+V+++GGDGT L A+
Sbjct: 30 AEVLIEEKFLDFLKQDLKFHPSYDTFSDNEE---LDGSADMVISIGGDGTFLRTATYVGN 86
Query: 355 PVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIE 414
PI+ + G LGF+ E ++ +D +L G +I R+ LQ N
Sbjct: 87 SNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYTIEERSLLQ------LESNPKLFG 140
Query: 415 DPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVH 474
+ LNE+ I + +S + + Y + ++ DGLI++T +GST YSL+ GG ++
Sbjct: 141 ELNFALNEIAILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIV 200
Query: 475 PQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRS 513
P + TPI PH+L+ RPL++P+ + +++ SRS
Sbjct: 201 PDAKSFVITPIAPHNLNVRPLVIPDDTEITLEV--ESRS 237
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 124 bits (312), Expect = 6e-32
Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 11/207 (5%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI 392
VD ++ +GGDGT+L K +P I+ ++G+LGF+T E L +L G I
Sbjct: 58 VDFIIAIGGDGTILRIEHKTKKDIP-ILGINMGTLGFLTEVEPEETFFALSRLLEGDYFI 116
Query: 393 TLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDG 452
R +L+ ++ N + D LNEV I GI + +L+ Y D V+ DG
Sbjct: 117 DERIKLRVYI------NGENVPD---ALNEVVILTGIPGKIIHLKYYVDGELADEVRADG 167
Query: 453 LILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSR 512
LI+ST +GSTAY+++AGG V P++ IL P+CP LS RP+++P + V+ +
Sbjct: 168 LIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRIDVK-LLRTG 226
Query: 513 SPAWASFDGKDRKQLAPGDALVCSMAP 539
DG+ ++L P + +P
Sbjct: 227 REIILVIDGQYYEELPPDTEITIKKSP 253
>gnl|CDD|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 271
Score = 113 bits (285), Expect = 3e-28
Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 14/206 (6%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI 392
D+++T+GGDGT+L KGP+ I ++G LGF+T + + ++RG I
Sbjct: 53 ADVIITIGGDGTILRTLQRAKGPILGI---NMGGLGFLTEIEIDEVGSAIKKLIRGEYFI 109
Query: 393 TLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDG 452
R +L+ ++ N +ED NE I + + + Y D F+ + DG
Sbjct: 110 DERMKLKVYI------NGERLEDCT---NEAVIHTDRIAKIRQFKIYYDGHFLDTFKADG 160
Query: 453 LILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSR 512
+I++T +GST+YS +AGG ++ P + G++ + I P+S + +++P T+ ++I +
Sbjct: 161 VIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEIKIAGDQS 220
Query: 513 SPAWASFDGKDRKQLAPGDALVCSMA 538
S DG+ +++ GD + S +
Sbjct: 221 S--LLILDGQYEYKISKGDTVEISKS 244
>gnl|CDD|235122 PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 108 bits (271), Expect = 4e-26
Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 15/236 (6%)
Query: 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWK 321
+ + + I+ P + + WL + + VE ++ EL ++
Sbjct: 3 NHFKCIGIVGHPRHPTALTTHEMLYHWLTSKG-YEVIVEQQIAHELQLKNVKTG------ 55
Query: 322 DEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDY 381
+ + + DL + +GGDG +L AA + ++ + G+LGF+T ++
Sbjct: 56 ---TLAEIGQQADLAIVVGGDGNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQ 112
Query: 382 LDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCD 441
L VL G R L+ V R + + +NEV + G +++ E Y D
Sbjct: 113 LSDVLEGHYISEKRFLLEAQVCR---HGQQKRIS--TAINEVVLHPGKVAHMIEFEVYID 167
Query: 442 NSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 497
++F + DGLI+ST +GSTAYSL+AGG ++ P + I P+ PH+LS RPL++
Sbjct: 168 DNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVI 223
>gnl|CDD|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 287
Score = 107 bits (269), Expect = 6e-26
Identities = 70/298 (23%), Positives = 140/298 (46%), Gaps = 25/298 (8%)
Query: 267 VVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEI 326
+ ++T+PN + + + L+ QK L+IY + E+L E + +
Sbjct: 13 IGLVTRPNVSLDKEI-------LKLQKILSIY-----KVEILLEKESAEILD--LPGYGL 58
Query: 327 LLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVL 386
L D +++LGGDGT++ ++ G LGF+T + + + +
Sbjct: 59 DELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFF 118
Query: 387 RGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVT 446
+G I L + K + +I + L N+V I + + + ++E + + +
Sbjct: 119 QGEFEIEKPYMLSVFL----EKKQGKILEK-LAFNDVVISKNNQASMAHIEAFLNEKYFN 173
Query: 447 CVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQ 506
GDG+I++T +GSTAY+++A G +++P + TP+C HSL+ RP++LP+
Sbjct: 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFE---- 229
Query: 507 IPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHW 564
+ F ++S DG+DR ++ ++ ++ V + D+F+ + + LHW
Sbjct: 230 VEFKTKSDCILCIDGQDRYKMNDFKSIKVGLSDKNVALIRHKNR--DYFQILKEKLHW 285
>gnl|CDD|179456 PRK02649, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 99.7 bits (249), Expect = 4e-23
Identities = 65/173 (37%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVP-PIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
+ + LGGDGTVL AA P P++ + G LGF+T + + +D VL G +
Sbjct: 69 MKFAIVLGGDGTVLSAARQL-APCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQYT 127
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
I R L V+R +++ E L LNE+ + R + + + E + D
Sbjct: 128 IEERTMLTVSVMRG---DQLRWE--ALSLNEMVLHREPLTSMCHFEIAIGRHAPVDIAAD 182
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILP--EHVT 502
G+ILST +GSTAYSL+AGG ++ P VP + TPICPHSL+ R L+ E VT
Sbjct: 183 GVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSDSEPVT 235
>gnl|CDD|167337 PRK02231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 272
Score = 95.6 bits (238), Expect = 5e-22
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 18/254 (7%)
Query: 288 WLREQKKLNIYVEPRVRAEL-LTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVL 346
WL+E+ + VE + +L L E+ S + + + L + +GGDG +L
Sbjct: 8 WLKERG-YQVLVEKEIAEQLNLPENHLASLEEIGQ----------RAQLAIVIGGDGNML 56
Query: 347 WAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVL-RGPISITLRNRLQCHVIRD 405
A + P++ + G+LGF+T ++ + L++ L RG + R L+ + R+
Sbjct: 57 GRARVLAKYDIPLIGINRGNLGFLTDIDPKNAYEQLEACLERGEFFVEERFLLEAKIERN 116
Query: 406 AAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYS 465
+I LNEV I +++ + Y D+ F + DGLI+ST +GSTAYS
Sbjct: 117 G-----KIIATSNALNEVVIHPAKIAHMIDFHVYIDDKFAFSQRSDGLIISTPTGSTAYS 171
Query: 466 LAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRK 525
L+AGG ++ P + I P+ PH+LS RPL++ + ++ + S D +
Sbjct: 172 LSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAEYNTPQLEVSCDSQIAL 231
Query: 526 QLAPGDALVCSMAP 539
P D + +P
Sbjct: 232 PFTPDDRVHVQKSP 245
>gnl|CDD|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 93.1 bits (232), Expect = 7e-21
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 32/211 (15%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRG---- 388
+LV+ LGGDGT+L AA + + P++ +LG +GF+ +E + ++ V+
Sbjct: 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDYRV 132
Query: 389 ----PISITLRNRLQCHVIRDAAKNEIEIE--DPILVLNEVTI---DRGISSYLTNLECY 439
+ +T+R + V R A NE +E D +L EV + R +SS+
Sbjct: 133 EERMTLDVTVRVGGE-IVWRGWALNEASLEKADREGML-EVVLEVDGRPVSSF------- 183
Query: 440 CDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPE 499
C DG+++ST +GSTAY+ +AGG +V P + +L P+ H+L RPL++
Sbjct: 184 ------GC---DGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVVSP 234
Query: 500 HVTLRVQIPFNSRSPAWASFDGKDRKQLAPG 530
T+ V+I S A DG+ L PG
Sbjct: 235 TSTVAVEI-LADTSDAVLWCDGRRSVDLPPG 264
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 90.9 bits (226), Expect = 2e-20
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISI 392
DL++ +GGDGTVL AA K P+V F G LGF++ + E +L+
Sbjct: 42 ADLIIVVGGDGTVLKAA---KKVGTPLVGFKAGRLGFLSSYTLEEIDRFLED-------- 90
Query: 393 TLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDG 452
L+N R K E E+ + L LN+VT++R S + +E ++ DG
Sbjct: 91 -LKNWNFREEKRWFLKIESELGN-HLALNDVTLERDPSQKMVEIEVSFEDHSSMWFFADG 148
Query: 453 LILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILP--EHVTLRVQ 506
+++ST +GSTAYSL+ GG ++ P TPI P L+ R +++P E VT+ Q
Sbjct: 149 VVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTVESQ 204
>gnl|CDD|235317 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 265
Score = 66.8 bits (164), Expect = 3e-12
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 25/192 (13%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPI--VPFSLGSLGFMTPFHSEHYKDYLDSVLRGP-- 389
D+V+++GGDGT+L A ++ + + V G LGF T + + ++ + P
Sbjct: 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQ 96
Query: 390 -ISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCV 448
+S L V E E L LNE TI R + + ++ F
Sbjct: 97 VVSYPLLE-----VKITYEDGEKE---KYLALNEATIKRIEGTLVADVYIN-GVLFER-F 146
Query: 449 QGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS---FR----PLILPEHV 501
+GDGL +ST +GSTAY+ + GG+++HP + + T I S++ FR PLILP+H
Sbjct: 147 RGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIA--SINNRVFRTLGSPLILPKHH 204
Query: 502 TLRVQIPFNSRS 513
T+ ++ P N
Sbjct: 205 TITLK-PVNDDD 215
>gnl|CDD|179584 PRK03501, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 264
Score = 61.5 bits (150), Expect = 2e-10
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 59/206 (28%)
Query: 330 HTKVDLVVTLGGDGTVLWAA--------SIFKGPVPPIVPFS-LGSLGFMTPFHSEHYKD 380
+++V++GGDGT L A ++ G S LGF FH +
Sbjct: 37 PKNANIIVSIGGDGTFLQAVRKTGFREDCLYAG-------ISTKDQLGFYCDFHIDD--- 86
Query: 381 YLDSVLRGPISITLRNRLQCHVIRDAAKNEIEI------------EDPILVLNEVTIDRG 428
LD +I+ K EIE+ LNE +I
Sbjct: 87 -LD-----------------KMIQAITKEEIEVRKYPTIEVTVDGSTSFYCLNEFSIRSS 128
Query: 429 ISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPH 488
I ++ Y D+ +GDG+++ST +GSTAY+ + G++V P +P + +
Sbjct: 129 IIKTFV-IDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELA-- 185
Query: 489 SL---SFR----PLILPEHVTLRVQI 507
SL ++R P IL L ++I
Sbjct: 186 SLNNNTYRTLGSPFILSHERKLTLKI 211
>gnl|CDD|100598 PRK00561, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 259
Score = 60.3 bits (146), Expect = 4e-10
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 334 DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISIT 393
D + LGGDG + A+ + +V + G LGF T F+
Sbjct: 35 DYLFVLGGDGFFVSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNF----------- 83
Query: 394 LRNRLQCHVIRDAAKNEIEIEDPI-LVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDG 452
Q + E++I+D I LVLNE+ + ++Y N+ + DN F +G G
Sbjct: 84 ANKLDQLKFTQ-IDLLEVQIDDQIHLVLNELAVYTN-TAYPINI--FIDNEFWEKYRGSG 139
Query: 453 LILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICP--HSLSF----RPLILPEHVTLRVQ 506
L++ +GSTA + +A G+++ P++ I + P H + P+ILP + +
Sbjct: 140 LLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHP-NQTTIQSPIILPIDTKVEFE 198
Query: 507 IPFNSRSPAWASF--DG 521
I + F DG
Sbjct: 199 IKKAFDHDQFPRFYADG 215
>gnl|CDD|215502 PLN02929, PLN02929, NADH kinase.
Length = 301
Score = 56.2 bits (136), Expect = 2e-08
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 40/191 (20%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVP-------PIVPFSLG----------SLGFMTPFHS 375
VDLVV +GGDGT+L A+ +P P + S G + +
Sbjct: 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATA 124
Query: 376 EHYKDYLDSVLRGPISITLRNRLQCHV----IRDAAKNEIEIEDPILVLNEVTIDRGISS 431
E ++ LD VL G + T +R+ V + A N++ I P + + R
Sbjct: 125 EDFEQVLDDVLFGRLKPTELSRISTVVNGTLLETPALNDVLIAHP----SPAAVSRFSFR 180
Query: 432 YLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLS 491
+ + V+ GL +ST +GSTA L+AGG + P+ L
Sbjct: 181 VGRQGG---SSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPM----------PLLSRDLQ 227
Query: 492 F--RPLILPEH 500
+ R I P H
Sbjct: 228 YMVREPISPGH 238
>gnl|CDD|179876 PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.
Length = 246
Score = 52.9 bits (128), Expect = 9e-08
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 54/199 (27%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGF-MTPFHSEHYKDYL----DSVL 386
+ D++V LGGDG +L + P+ + GS+GF M + + + + +VL
Sbjct: 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTVL 84
Query: 387 RGPISITLRNRLQCHVI-------------RDAAKNEIEIEDPILVLNEVTIDRGISSYL 433
P+ +T + R AAK I I D + + E
Sbjct: 85 H-PLRMTATDVSGEVHEALAINEVSLFRQTRQAAKLRISI-DGKVRMEE----------- 131
Query: 434 TNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFR 493
L C DG++++T +GSTAY+L+A G ++ + TPI P FR
Sbjct: 132 --LVC------------DGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISP----FR 173
Query: 494 P-----LILPEHVTLRVQI 507
P +LP T+R +
Sbjct: 174 PRRWRGALLPNSATVRFDV 192
>gnl|CDD|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic
diacylglycerol kinase [Lipid metabolism / General
function prediction only].
Length = 301
Score = 38.8 bits (91), Expect = 0.006
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 300 EPRVRAELLTESSYFSFVQTWK--DEKEIL--LLHTKVDLVVTLGGDGTVLWAAS-IFKG 354
V L S T + D EI D V+ GGDGTV A+ +
Sbjct: 22 LREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT 81
Query: 355 PVPPIVPFSLGS 366
PP+ G+
Sbjct: 82 DDPPLGILPGGT 93
>gnl|CDD|216116 pfam00781, DAGK_cat, Diacylglycerol kinase catalytic domain.
Diacylglycerol (DAG) is a second messenger that acts as
a protein kinase C activator. The catalytic domain is
assumed from the finding of bacterial homologues. YegS
is the Escherichia coli protein in this family whose
crystal structure reveals an active site in the
inter-domain cleft formed by four conserved sequence
motifs, revealing a novel metal-binding site. The
residues of this site are conserved across the family.
Length = 127
Score = 33.0 bits (76), Expect = 0.14
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Query: 299 VEPRVRAELLTESSYFSFVQTWKDEKEILL-----LHTKVDLVVTLGGDGTVLWAASIFK 353
V P++R L V+T + + L L DLVV GGDGTV +
Sbjct: 20 VLPKLRKALNE----AQVVETEEGGPAVALELARALGDFDDLVVVAGGDGTVNEVLNGLA 75
Query: 354 G----PVPP--IVPFSLGS 366
G PP I+P LG+
Sbjct: 76 GREDRLKPPLGIIP--LGT 92
>gnl|CDD|222698 pfam14346, DUF4398, Domain of unknown function (DUF4398). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 127 and
269 amino acids in length.
Length = 105
Score = 30.8 bits (70), Expect = 0.45
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 59 EFSEALRTVAKALRRAAEGK---AAAQAEAAEWKRRFELERARNLRLEN 104
E A +A+A EGK A AE AE R +AR + +
Sbjct: 43 ELKLAREKLAQAKAALDEGKYEEARRLAEQAEADARLAEAKARAAKAQA 91
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 29.9 bits (68), Expect = 2.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 77 GKAAAQAEAAEWKRRFELERARNLRLE--NKGNG 108
K A+ EW R EL N R+E +KGN
Sbjct: 101 KKEEARRRIDEWLERLELSEYANKRVEELSKGNQ 134
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 30.7 bits (69), Expect = 2.6
Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 12/172 (6%)
Query: 31 SLSLLQSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEWKR 90
L + + V + +++ + + L ALR + LR E + E + +
Sbjct: 238 ELKRYEQDAEVVKSMKEQLLQIPE--LERELAALREENRKLRSMKEDNELLKEELEDLQS 295
Query: 91 ---RFELERARNLRLENKGNGICEKLRSWWMQTSVNNGMGLIRLVLPCLLCWEIWKEQDR 147
RFE R + LE + + +L+SW S+ +GL L P L I Q+
Sbjct: 296 RLERFEKMREKLADLELEKEKLENELKSW---KSLLQDIGL-NLRTPDDLSRRIVVLQNE 351
Query: 148 RLYEEQSFKENNSVSEGGRLENSTSQPVLLNQEREHSNRACLEHGICSHEVL 199
L Q ++N S+S + +T Q + L +++ S L+ + + + L
Sbjct: 352 EL---QLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKAL 400
>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain,
uncharacterized subfamily 13. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 285
Score = 30.3 bits (69), Expect = 2.8
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 440 CDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGI 480
C + D +T+ G + Y G SM P V G+
Sbjct: 222 CASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGV 262
>gnl|CDD|218251 pfam04762, IKI3, IKI3 family. Members of this family are
components of the elongator multi-subunit component of a
novel RNA polymerase II holoenzyme for transcriptional
elongation. This region contains WD40 like repeats.
Length = 903
Score = 30.3 bits (69), Expect = 3.0
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 222 LSWRCKGE-----NSDQHKHDIVYFER-----GNITTAERSS-KQISLKWES 262
LSWR G + D+V+FER G T K ISL+W S
Sbjct: 248 LSWRPSGNLIASIQRLPDRLDVVFFERNGLRHGEFTLRLPEEEKVISLEWNS 299
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 30.3 bits (69), Expect = 3.6
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 67 VAKALRRAAEGKAAAQAEAAEWKRRFELERARNLRLE 103
AKA RA E + EA K RFE AR RLE
Sbjct: 433 QAKAEIRAIEQEKKKAEEA---KARFE---ARQARLE 463
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 30.1 bits (68), Expect = 3.7
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 29 GDSLSL-LQSEKAVQEI---LQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAE 84
GD L L +E+ +Q + D LI EA R A A A G A+ E
Sbjct: 870 GDMLELGDNGPAMHREVGKYARQLGI----DALITLGEAARDAAAAFGAGARGVCASVDE 925
Query: 85 AAEWKRRFELER-------ARNLRLEN 104
R E +R +RLE
Sbjct: 926 IIAALRGALPEGDSVLIKGSRFMRLER 952
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 29.7 bits (67), Expect = 4.9
Identities = 24/99 (24%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 32 LSLLQSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRA---AEGKAAAQAEAAEW 88
L+ L E+ ++ L Q S D + E LR L+ AE AA EAA
Sbjct: 201 LAQLLEER--KKTLAQLNSELSADQ--KKLEELRANESRLKNEIASAEAAAAKAREAAAA 256
Query: 89 KRRFELERARNLRLENKGNGICEKLRSWWMQTSVNNGMG 127
AR E K G K +
Sbjct: 257 AEA---AAARARAAEAKRTGETYK-----PTAPEKMLIS 287
>gnl|CDD|217977 pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase.
Pyruvyl-transferases involved in
peptidoglycan-associated polymer biosynthesis. CsaB in
Bacillus anthracis is necessary for the non-covalent
anchoring of proteins containing an SLH (S-layer
homology) domain to peptidoglycan-associated pyruvylated
polysaccharides. WcaK and AmsJ are involved in the
biosynthesis of colanic acid in Escherichia coli and of
amylovoran in Erwinia amylovora.
Length = 209
Score = 29.1 bits (65), Expect = 5.1
Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 18/146 (12%)
Query: 279 QILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKE--ILLLHTKVDLV 336
++ +++ L KKL E + +E+ K K L K D V
Sbjct: 5 ALILEALLKLL---KKLGPDAEIIDYSPEPSETRKLLRDLNSKTLKLLKFLRKLRKNDDV 61
Query: 337 VTLGGDGTVLW---------AASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLR 387
+ +GGDG + A + K P++ G + PF +E + L +L
Sbjct: 62 IIVGGDGDLGNLGDLLRLLRLAFVAKKLGKPVILLGQG----IGPFLNEALRKLLKKLLS 117
Query: 388 GPISITLRNRLQCHVIRDAAKNEIEI 413
I++R+ L ++ +E+
Sbjct: 118 KADLISVRDELSYELLEKLGLKNVEL 143
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 29.6 bits (67), Expect = 5.6
Identities = 22/98 (22%), Positives = 28/98 (28%), Gaps = 26/98 (26%)
Query: 327 LLLHTKV------DLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKD 380
LLL T+ DL+ G G + F+ GSLG T + Y D
Sbjct: 258 LLLFTEDLKEERLDLLRQTGAKGLLQGGGVKL---------FADGSLGERTALLAAPYAD 308
Query: 381 YLDSV---------LRGPISITLRNRLQ--CHVIRDAA 407
L + L H I D A
Sbjct: 309 GPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGA 346
>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
Length = 396
Score = 29.4 bits (67), Expect = 5.7
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 37 SEKAVQEILQQT-----PVHGSDDHLIEFSEALRTVAK 69
+E+ V+E L++ P +D+ L+E + LR ++K
Sbjct: 181 NEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISK 218
>gnl|CDD|190601 pfam03323, GerA, Bacillus/Clostridium GerA spore germination
protein.
Length = 468
Score = 29.3 bits (67), Expect = 6.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 363 SLGSLG--FMTPFHSEHYKDYLDSVLRGPISITLRNR 397
SL S G +++P + KD D ++R P+ ++ R
Sbjct: 428 SLKSFGVPYLSPLAPFNLKDLKDVLIRLPLWA-MKKR 463
>gnl|CDD|182018 PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional.
Length = 172
Score = 28.6 bits (64), Expect = 6.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 543 PTACQVDSTDDFFRSIHDGL-HWNLRKTQSSFD 574
T + + + + H L W RK QS+FD
Sbjct: 4 ATTTASLTFESLYGTHHGWLKSWLTRKLQSAFD 36
>gnl|CDD|179302 PRK01558, PRK01558, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 28.6 bits (64), Expect = 7.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 62 EALRTVAKALRRAAEGKAAAQAEAAEWKR 90
EA +AKA A E KA A+ EA ++KR
Sbjct: 34 EAEEIIAKAEEEAKELKAKAEKEANDYKR 62
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase.
Length = 559
Score = 29.1 bits (65), Expect = 8.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 61 SEALRTVAKALRRAAEGKAAAQAEAAEWKRRFELERARNLRL 102
S+ L+T +R+ A+ A + R+ +L+ ++ LRL
Sbjct: 73 SDPLKTRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRL 114
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 28.5 bits (64), Expect = 9.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 261 ESPPQTVVILTKPNSNSVQILCAQMVRWLR 290
++PP VV + PNS + L A + WLR
Sbjct: 165 QNPPVRVVFVVHPNSPTGNPLTAAELEWLR 194
>gnl|CDD|225740 COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase
[General function prediction only].
Length = 355
Score = 28.5 bits (64), Expect = 9.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 333 VDLVVTLGGDGTVLWAASIFKGPVP 357
VDL+V GGDGT A VP
Sbjct: 101 VDLIVFAGGDGTARDVAEAVGADVP 125
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 28.4 bits (64), Expect = 9.6
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 388 GPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRG 428
S + R ++ IEI +P++ L V++ R
Sbjct: 2 LAHSESSRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRN 42
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 28.9 bits (65), Expect = 9.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 62 EALRTVAKALRRAAEGK-AAAQAEAAEWKRRFELERARNLR 101
+ L V A + AAA+A EW+ LERAR LR
Sbjct: 8 QVLARVPAASAADVDRAVAAARAAFPEWRATTPLERARMLR 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.406
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,003,439
Number of extensions: 2791229
Number of successful extensions: 3113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3064
Number of HSP's successfully gapped: 57
Length of query: 579
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 477
Effective length of database: 6,413,494
Effective search space: 3059236638
Effective search space used: 3059236638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)