RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 008048
(579 letters)
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 379 bits (974), Expect = e-128
Identities = 121/335 (36%), Positives = 199/335 (59%), Gaps = 25/335 (7%)
Query: 257 SLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAEL-LTESSYFS 315
L W P++V+++ K S+ ++ L E + + +YVE +V + + F
Sbjct: 31 RLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLME-ENMIVYVEKKVLEDPAIASDESFG 89
Query: 316 FVQT--WKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPF 373
V+ ++ + ++D ++ LGGDGT+L+A+S+F+G VPP++ F LGSLGF+TPF
Sbjct: 90 AVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPF 149
Query: 374 HSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPI---------------- 417
E+++ + V+ G ++ LR+RL+ V+++ + + + +
Sbjct: 150 SFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGK 209
Query: 418 -----LVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSM 472
VLNEV IDRG SSYL+N++ Y D +T VQGDG+I+ST +GSTAY+ AAG SM
Sbjct: 210 QAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASM 269
Query: 473 VHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDA 532
+HP VP I+ TPICPHSLSFRP+++P V L++ + +R+ AW SFDG+ R+++ GD+
Sbjct: 270 IHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDS 329
Query: 533 LVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 567
+ + + +P+P+ C D D+F S+ LH +
Sbjct: 330 ISITTSCYPLPSICVRDPVSDWFESLAQCLHHHHH 364
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 372 bits (956), Expect = e-125
Identities = 118/361 (32%), Positives = 177/361 (49%), Gaps = 47/361 (13%)
Query: 252 SSKQISLKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKK-LNIYVEPRVRAEL--- 307
+SK SL W++P Q V I KP + S + + + L E +N+ V+P V E+
Sbjct: 29 NSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQD 88
Query: 308 ----LTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFKG-PVPPIVPF 362
L + E++I + DL+VTLGGDGT+L S+F VPP++ F
Sbjct: 89 FKSPLENDPNRPHILYTGPEQDI---VNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAF 145
Query: 363 SLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNE 422
+LG+LGF++PF + +K V+ R RL+CH+ + + + I +N+
Sbjct: 146 ALGTLGFLSPFDFKEHKKVFQEVISSRAKCLHRTRLECHLKKKDSNSSIVTH----AMND 201
Query: 423 VTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILF 482
+ + RG S +LTNL+ + D F+T DG+ L+T +GSTAYSL+AGGS+V P VP IL
Sbjct: 202 IFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVSPLVPAILM 261
Query: 483 TPICPHSLSFRPLILPEHVTLRVQI-----PFNSRSPAWASFDGKDRKQLAPGDALVCSM 537
TPICP SLSFRPLILP +R++I S S DG ++ L GD +
Sbjct: 262 TPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVIN 321
Query: 538 AP-------WPVPT-------------------ACQVDSTDDFFRSIHDGLHWNLRKTQS 571
+PT C + +D+ R I++ L +N +
Sbjct: 322 EVGTIYIDGTQLPTTRKTENDFNNSKKPKRSGIYCVAKTENDWIRGINELLGFNSSFRLT 381
Query: 572 S 572
Sbjct: 382 K 382
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium}
Length = 292
Score = 227 bits (582), Expect = 2e-70
Identities = 76/306 (24%), Positives = 135/306 (44%), Gaps = 18/306 (5%)
Query: 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWK 321
+ + + I+ P + + RWL + + VE ++ A L +
Sbjct: 3 NHFKCIGIVGHPRHPTALTTHEMLYRWL-CDQGYEVIVEQQI-AHELQLKNV-------- 52
Query: 322 DEKEILLLHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDY 381
+ + + DL V +GGDG +L AA ++ + G+LGF+T ++
Sbjct: 53 PTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQ 112
Query: 382 LDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCD 441
L VL G R L+ V + + +NEV + G +++ E Y D
Sbjct: 113 LSDVLEGRYISEKRFLLEAQVCQQD-----RQKRISTAINEVVLHPGKVAHMIEFEVYID 167
Query: 442 NSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHV 501
+F + DGLI+ST +GSTAYSL+AGG ++ P + I P+ PH+LS RPL++
Sbjct: 168 ETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSS 227
Query: 502 TLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDG 561
T+R++ + RS S D + + G+ ++ + + D +F ++
Sbjct: 228 TIRLRFS-HRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKD--YSYFNTLSTK 284
Query: 562 LHWNLR 567
L W+ +
Sbjct: 285 LGWSKK 290
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 210 bits (537), Expect = 1e-63
Identities = 66/310 (21%), Positives = 127/310 (40%), Gaps = 13/310 (4%)
Query: 262 SPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWK 321
+ ++V+++ + ++ + L K+ + V + + ++
Sbjct: 2 TAHRSVLLVVHTGRDEATETARRVEKVL-GDNKIALRVLSAEAVDRGSLHLAPDDMRAMG 60
Query: 322 DEKEILL----LHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEH 377
E E++ +LV+ LGGDGT L AA + + P++ +LG +GF+ +E
Sbjct: 61 VEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEA 120
Query: 378 YKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLE 437
L+ V+ + R L V + I + LNEV++++G + +
Sbjct: 121 IDAVLEHVVAQDYRVEDRLTLDVVVRQGG-----RIVNRGWALNEVSLEKGPRLGVLGVV 175
Query: 438 CYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLIL 497
D V+ DG+++ST +GSTAY+ +AGG ++ P + IL P H+L RP++
Sbjct: 176 VEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVT 235
Query: 498 PEHVTLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRS 557
T+ ++I + A DG+ + G L + V A F
Sbjct: 236 SPEATIAIEIEADGH-DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDS--APFTDR 292
Query: 558 IHDGLHWNLR 567
+ +
Sbjct: 293 LVRKFRLPVT 302
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 193 bits (493), Expect = 7e-58
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
DL+V +GGDGTVL AA P +V F G LGF+T + + +L+ +
Sbjct: 41 TADLIVVVGGDGTVLKAAKKAADGTP-MVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFR 99
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
R +Q L LN+VT++R +S + +E ++ D
Sbjct: 100 EETRWFIQIESELGNH----------LALNDVTLERDLSGKMVEIEVEVEHHSSMWFFAD 149
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNS 511
G+++ST +GSTAYSL+ GG ++ P+ + +PI P R +++P + + V+
Sbjct: 150 GVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVVVES---- 205
Query: 512 RSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 567
+ DG + + V + D+ I D L + R
Sbjct: 206 QRDINMLVDGVL---TGKTKRIEVKKSRRYVRILRPPE--YDYVTVIRDKLGYGRR 256
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 185 bits (473), Expect = 1e-54
Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 24/233 (10%)
Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
D +V++GGDGT+L K P I + G +G +T E+++ L +
Sbjct: 68 NFDFIVSVGGDGTILRILQKLKRCPP-IFGINTGRVGLLTHASPENFEVELKKAVEK-FE 125
Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
+ R+ C + D L LNE+ + + + ++ D V ++ D
Sbjct: 126 VERFPRVSCSAMPDV-----------LALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCD 174
Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNS 511
G I++T GST Y+ +AGG +V P + + PI P ++P ++ + V
Sbjct: 175 GFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIA---- 230
Query: 512 RSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHW 564
A DG +K + + + +P + FR++ +
Sbjct: 231 -EKAIVVADG--QKSVDFDGEITIEKSEFPAVFF----KNEKRFRNLFGKVRS 276
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A*
3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A*
3v8r_A*
Length = 272
Score = 178 bits (453), Expect = 7e-52
Identities = 56/281 (19%), Positives = 111/281 (39%), Gaps = 23/281 (8%)
Query: 294 KLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLWAASIFK 353
K I + +++LL + F E ++ + ++V+++GGDGT L A ++
Sbjct: 2 KYMITSKGDEKSDLLRLNMIAGF-----GEYDMEYDDVEPEIVISIGGDGTFLSAFHQYE 56
Query: 354 GPVP--PIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPISITLRNRLQCHVIRDAAKNEI 411
+ + G LGF + + + +G L+ V
Sbjct: 57 ERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKY----GIG 112
Query: 412 EIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGS 471
+ E L LNE T+ ++ ++ ++ +GDGL +ST SG+TAY+ + GG+
Sbjct: 113 KKEATYLALNESTVKSSGGPFV--VDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGA 170
Query: 472 MVHPQVPGILFTPICP-----HSLSFRPLILPEHVTLRVQIPFNSRSPAWASFDGKDRKQ 526
++HP + + T + + PL+ P+H + +Q + S D
Sbjct: 171 LMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQP--VNDKDFQISVDHL-SIL 227
Query: 527 LAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHWNLR 567
+ ++ + A + F+R +HD +L
Sbjct: 228 HRDVQEIRYEVSAKKIHFA--RFRSFPFWRRVHDSFIEDLE 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 2e-06
Identities = 90/561 (16%), Positives = 160/561 (28%), Gaps = 171/561 (30%)
Query: 5 KFNS-----TDSFGHGDAGVS----------------RPHSENGFGDSLSLLQSEKAVQE 43
+FN T+ F D + P F L+L +E
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENC 94
Query: 44 ILQQTPVH--------GSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEWKRRFELE 95
L+ +H +D L++ E ++ A R + + + F
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA--RIMAKRPFDKKSNSAL---FRAV 149
Query: 96 RARNLRLENKGNGICEKLRSWWMQTSVNNGMGLIRLVLPCLLCWEIWKEQDRRLYEE-QS 154
N +L ++ G G + ++E R LY+
Sbjct: 150 GEGNAQL-----------------VAIFGGQGNTD---------DYFEEL-RDLYQTYHV 182
Query: 155 FKENNSVSEGGRLENSTSQPVLLNQEREHSNRACLEHGICSHEVLQDAKDV--DSNMVNN 212
+ L G+ E L++ + +++
Sbjct: 183 LVGDLIKFSAETLSELIRTT--------LDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 213 KIMKKASFKLSWRCKGENSDQHKHDIVYFERGNITTAERSSKQISLKWESP-PQTVV--- 268
I S L Q H +V + T E S LK + Q +V
Sbjct: 235 PI----SCPLIGVI------QLAHYVVTAKLLGFTPGELRS---YLKGATGHSQGLVTAV 281
Query: 269 -ILTKPNSNSVQILCAQMVRWL-----REQKKL-NIYVEPRVRAELLTES----SY---- 313
I + S + + + L R + N + P + + L + S
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 314 ----FSFVQTWKDEK----------EILLLHTKVDLVVTLGGDGTVLWAASIF--KGPVP 357
VQ + ++ EI L++ +LVV+ G L+ ++ K P
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAP 399
Query: 358 PI-----VPFS----LGSLGFM---TPFHSEHYKDYLDSVL----RGPISITLRNRLQCH 401
+PFS S F+ +PFHS D + + +S +Q
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIP 458
Query: 402 V--------IRDAAKNEIE------IEDPI----LVLNEVT--ID--RGISSYLTNLECY 439
V +R + + E I P+ + T +D G +S L L
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL--- 515
Query: 440 CDNSFVTCVQGDG--LILSTT 458
G G +I++ T
Sbjct: 516 ----THRNKDGTGVRVIVAGT 532
Score = 49.7 bits (118), Expect = 2e-06
Identities = 82/533 (15%), Positives = 161/533 (30%), Gaps = 186/533 (34%)
Query: 148 RLYEEQSF-KENNSVSEGGRLENSTSQPV------------LLNQEREHSNRACLEHGIC 194
+L E+ F K +EG ++ + P L+ + L +
Sbjct: 32 QLQEQ--FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 195 S--HEVLQDAKDVDSNMVNNKIMKKASFKLSWRCKGENSDQHKHDIV--YFERGNITTAE 250
+ L+ D+ + + + + +++ Y A
Sbjct: 90 EFENCYLEG-NDIHA------------LAAKLLQENDTTLVKTKELIKNYIT------AR 130
Query: 251 RSSKQISLKWESPPQTVVILTKPNSNSVQILCAQM------VRWLREQKKL-NIYVEPRV 303
+K+ K + + + Q+ A + E + L Y V
Sbjct: 131 IMAKRPFDKKSNSA----LFRAVGEGNAQL-VAIFGGQGNTDDYFEELRDLYQTY-HVLV 184
Query: 304 R------AELLTESSYFSFVQTWKDEKEILLLHTK-VDLVVTLGGDGT---VLWAASIFK 353
AE L+E + + + T+ ++++ L + SI
Sbjct: 185 GDLIKFSAETLSELI--------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-- 234
Query: 354 GPV--PPIVPFSLG-------SLGFMTPF-----------HS---------------EHY 378
P+ P I L LGF TP HS E +
Sbjct: 235 -PISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 379 KDYLDSVLRGPISITLRNRLQCH-----------VIRDAAKNEIEIEDPILVLNEVTIDR 427
+ + I +R C+ ++ D+ +N + P+L +
Sbjct: 293 FVSVRKAITVLFFIGVR----CYEAYPNTSLPPSILEDSLENNEGVPSPMLSI------S 342
Query: 428 GISSYLTNLECYCD--NS--------FVTCVQG-DGLILSTTSGSTA--YSL-------A 467
++ ++ Y + NS ++ V G L++S G Y L
Sbjct: 343 NLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNLTLRKAK 397
Query: 468 AGGSMVHPQVP--------GILFTPI-CP-HSLSFRPLILP--EHVT---LRVQIPFNSR 512
A + ++P F P+ P HS L++P + + ++ + FN++
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHS----HLLVPASDLINKDLVKNNVSFNAK 453
Query: 513 S---PAWASFDGKDRKQLAPG------DALVCSMAPWPVPTACQVDSTD--DF 554
P + +FDG D + L+ D ++ W T Q +T DF
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDF 504
Score = 48.5 bits (115), Expect = 6e-06
Identities = 49/296 (16%), Positives = 98/296 (33%), Gaps = 77/296 (26%)
Query: 300 EPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVT------LGGDG--TVLWAASI 351
EP AEL+ + +V + + ++ ++L +T L G+ + AA +
Sbjct: 53 EPTTPAELV--GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL--AAKL 108
Query: 352 FKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDS--VLRGPISITLRNRLQCHVIRDAAKN 409
+L + K+Y+ + + + P + L R +
Sbjct: 109 -----LQENDTTLVKTKELI-------KNYITARIMAKRPFDKKSNSAL----FRAVGEG 152
Query: 410 EIEIEDPILVL-----NEVTID--RGI-SSYLTNLECYCDNSFVTCVQGDGLILSTTSGS 461
++ + + + + R + +Y + S T + L T+
Sbjct: 153 NAQL---VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-----LIRTTLD 204
Query: 462 TAYSLAAGGSMV----HP-QVPGILFTPICPHSLSFRPLI-LPE--H--VTLRVQIPFNS 511
G +++ +P P + P S PLI + + H VT ++
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---PLIGVIQLAHYVVTAKLL----G 257
Query: 512 RSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTAC---QVDSTDDFFRSIHDGLHW 564
+P G+ R L G A S + TA + DS + FF S+ +
Sbjct: 258 FTP------GELRSYLK-G-ATGHSQG---LVTAVAIAETDSWESFFVSVRKAITV 302
Score = 35.0 bits (80), Expect = 0.077
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 29/113 (25%)
Query: 119 QTSVNNGMGL--------IRLVLPCLLCWEIWKEQDRRLYEEQSFKENNSVSEGGRLENS 170
Q S GMG+ + ++W D + F S+ + N
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQ---------DVWNRADNHFKDTYGF----SILDIVI-NNP 1669
Query: 171 TSQPVLLNQEREHSNRACLEHGICSHEVLQDAKDVDSNMVNNKIMKKASFKLS 223
+ + E+ R ++ + VD + KI K+ + +
Sbjct: 1670 VNLTIHFGGEKGKRIRE-------NYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Score = 30.0 bits (67), Expect = 3.0
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 11/57 (19%)
Query: 489 SLSFRPLILPEHVTLRVQI--PFNSRSPA---WASFDGKDRKQL-APGDALVCSMAP 539
+ S RPL L H +L + P S A F K L P + P
Sbjct: 3 AYSTRPLTL-SHGSLEHVLLVPTASFFIASQLQEQF----NKILPEPTEGFAADDEP 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 1e-05
Identities = 60/380 (15%), Positives = 109/380 (28%), Gaps = 107/380 (28%)
Query: 93 ELERARNL--RLENKGNGICEKLRSWWMQTSVNNGMGLIRLVLPCLLCWEIWKEQDR--- 147
+ L L +K + +K +++ + + K + R
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFL---------MSPIKTEQRQPS 106
Query: 148 ---RLYEEQSFKENNSVSEGGRLENSTSQPVL-----LNQEREHSNRACLEHGI--CSHE 197
R+Y EQ + N + S QP L L + R N L G+
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGSGKT 164
Query: 198 VLQDAKDVDSNMVNNKIMKKASFKLSWRCKGENSDQHKHDIVYFERGNITTAERSSKQIS 257
+ A DV + K+ K FK+ W ++
Sbjct: 165 WV--ALDVCLS---YKVQCKMDFKIFW-------------------------------LN 188
Query: 258 LKWESPPQTVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFV 317
LK + P+TV+ + +Q L Q+ + + ++R + +
Sbjct: 189 LKNCNSPETVLEM-------LQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQA--ELRRL 237
Query: 318 QTWKDEKEILL---------------LHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPF 362
K + LL L K+ L+ T V S +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTT--RFKQVTDFLSAATTTHISLDHH 294
Query: 363 SLGSLGFMTPFHSEHYKDYLDSVLRG-----PISITLRNRLQCHVIRDAAKNEIEIEDPI 417
S+ + K L L P + N + +I ++ ++ + D
Sbjct: 295 SMT-------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 418 LVLNEVTIDRGISSYLTNLE 437
+N + I S L LE
Sbjct: 348 KHVNCDKLTTIIESSLNVLE 367
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.4 bits (81), Expect = 0.026
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 393 TLRNRLQC--------HVIRDAAKNEIEIEDPILVLNEVTIDRG 428
L L C ++ ++ ++ LVL++ +D
Sbjct: 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.087
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 24/47 (51%)
Query: 151 EEQSFKENNSVSEGGRLENS------TSQPVL-LNQEREHSNRACLE 190
E+Q+ K +L+ S S P L + A +E
Sbjct: 18 EKQALK---------KLQASLKLYADDSAPALAIK--------ATME 47
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 31.6 bits (71), Expect = 0.71
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)
Query: 288 WLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKEILLLHTKVDLVVTLGGDGTVLW 347
LRE ++ V +L T F+ + W + + +++ + + +
Sbjct: 101 SLREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRI--ELEGSFVIDACPNLKF 158
Query: 348 AASIFKGPVPPIVPFSLGSLGFMT 371
+ PP P
Sbjct: 159 TPFPLRSAAPPYSPHRFDPHPGDN 182
>3s40_A Diacylglycerol kinase; structural genomics, the center for
structural genomics of infectious diseases, csgid,
transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Length = 304
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 301 PRVRAELLTESSYFSFVQTWK--DEKEILL-LHTKVDLVVTLGGDGTV 345
++ L + T + D + +KVDL++ GGDGTV
Sbjct: 29 TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTV 76
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 30.8 bits (70), Expect = 1.3
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 301 PRVRAELLTESSYFSFVQTWK--DEKEIL--LLHTKVDLVVTLGGDGTV 345
P +L S T K D +H D+++ GGDGT+
Sbjct: 45 PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTL 93
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 30.4 bits (69), Expect = 1.4
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 301 PRVRAELLTESSYFSFVQTWK--DEKEIL--LLHTKVDLVVTLGGDGTV 345
L E TW+ D + V V+ GGDGT+
Sbjct: 47 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTI 95
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.2 bits (68), Expect = 2.6
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 18/118 (15%)
Query: 462 TAY---SLAAGGSMVHPQVPGILFTPICPHSLSF-RPLILPEHVTLRVQIPFNSRSPAWA 517
T Y + + + TP+ ++ + ILP+ T+ +++ S A+
Sbjct: 889 TGYLWLTWKTLARALSQNLEE---TPVVFEDVTLHQATILPKTGTVSLEVRLLEASHAFE 945
Query: 518 SFD--------GKDRKQLAPGDALVCSMAPWPVP--TACQVDSTDDFFRSIHD-GLHW 564
D GK + +P L + A TA S D ++ + G +
Sbjct: 946 VSDSNGSLIASGKVYQWESPDPKLFDTRAAVDPADSTAEFRLSQGDVYKDLRLRGYDY 1003
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR
domain, endocytosis/exocytosis complex; 2.31A {Bos
taurus} SCOP: b.1.10.3 d.105.1.2
Length = 322
Score = 28.8 bits (64), Expect = 5.3
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 22/119 (18%)
Query: 165 GRLENSTSQPVLLNQEREHSNRACLEHGICSHEVLQDAKDVDSNMVNNKIMKKASFKLSW 224
G L S+ +PV L + C +H H V Q D +N +N++ ++ + ++
Sbjct: 75 GPLFKSSPEPVALTESETEYVIRCTKHTFTDHMVFQ--FDC-TNTLNDQTLENVTVQM-- 129
Query: 225 RCKGENSDQHKHDIVYFERGNITTAERSSKQISLKWESPPQTVVILTKPNSNSVQILCA 283
E S+ +E A SL + P ++ P + + C
Sbjct: 130 ----EPSEA-------YEVLCYVPAR------SLPYNQPGTCYTLVALPKEDPTAVACT 171
>3h20_A Replication protein B; primase, nucleotidyltransferase,
helix-bundle-domain, replic RSF1010; 1.99A {Plasmid
RSF1010} PDB: 3h25_A
Length = 323
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 38 EKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAAEWKRRFELERA 97
E+ + + + +P E RTV+K + + A A+ A R+ ++R
Sbjct: 258 EEIGKAMAEASPALAERKPGHEADYIERTVSKVMGLPSVQLARAELARAPAPRQRGMDRG 317
Query: 98 R 98
Sbjct: 318 G 318
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter
freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Length = 552
Score = 28.4 bits (64), Expect = 8.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 55 DHLIEFSEALRTVAKALRRAAEGKAAAQAEAA 86
D L +L K L+ A + A A AE
Sbjct: 479 DALQPALTSLLAQPKNLQAAFD-AAQAGAERT 509
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.406
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,736,399
Number of extensions: 515640
Number of successful extensions: 1361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1332
Number of HSP's successfully gapped: 30
Length of query: 579
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 480
Effective length of database: 3,937,614
Effective search space: 1890054720
Effective search space used: 1890054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)