RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 008048
         (579 letters)



>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 302

 Score =  146 bits (369), Expect = 2e-40
 Identities = 66/306 (21%), Positives = 126/306 (41%), Gaps = 13/306 (4%)

Query: 266 TVVILTKPNSNSVQILCAQMVRWLREQKKLNIYVEPRVRAELLTESSYFSFVQTWKDEKE 325
           +V+++     +       ++ + L +  K+ + V      +  +       ++    E E
Sbjct: 2   SVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIE 60

Query: 326 ILL----LHTKVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDY 381
           ++          +LV+ LGGDGT L AA + +    P++  +LG +GF+    +E     
Sbjct: 61  VVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAV 120

Query: 382 LDSVLRGPISITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCD 441
           L+ V+     +  R  L   V +        I +    LNEV++++G    +  +    D
Sbjct: 121 LEHVVAQDYRVEDRLTLDVVVRQGG-----RIVNRGWALNEVSLEKGPRLGVLGVVVEID 175

Query: 442 NSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHV 501
              V+    DG+++ST +GSTAY+ +AGG ++ P +  IL  P   H+L  RP++     
Sbjct: 176 GRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEA 235

Query: 502 TLRVQIPFNSRSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDG 561
           T+ ++I  +    A    DG+    +  G  L  +     V  A        F   +   
Sbjct: 236 TIAIEIEADGH-DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDS--APFTDRLVRK 292

Query: 562 LHWNLR 567
               + 
Sbjct: 293 FRLPVT 298


>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
           PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score =  127 bits (319), Expect = 6e-34
 Identities = 48/233 (20%), Positives = 94/233 (40%), Gaps = 24/233 (10%)

Query: 332 KVDLVVTLGGDGTVLWAASIFKGPVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPIS 391
             D +V++GGDGT+L      K   PPI   + G +G +T    E+++            
Sbjct: 39  NFDFIVSVGGDGTILRILQKLK-RCPPIFGINTGRVGLLTHASPENFE------------ 85

Query: 392 ITLRNRLQCHVIRDAAKNEIEIEDPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGD 451
           + L+  ++   +    +        +L LNE+ +     + + ++    D   V  ++ D
Sbjct: 86  VELKKAVEKFEVERFPRVSCSAMPDVLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCD 145

Query: 452 GLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEHVTLRVQIPFNS 511
           G I++T  GST Y+ +AGG +V P +   +  PI P    ++P ++     + V      
Sbjct: 146 GFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIA---- 201

Query: 512 RSPAWASFDGKDRKQLAPGDALVCSMAPWPVPTACQVDSTDDFFRSIHDGLHW 564
              A    DG  +K +     +    + +P          +  FR++   +  
Sbjct: 202 -EKAIVVADG--QKSVDFDGEITIEKSEFPAVFF----KNEKRFRNLFGKVRS 247


>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 28.8 bits (64), Expect = 1.6
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 29  GDSLSLLQSEKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQAEAA-- 86
            ++L + +  +A  + L Q P  G+         A++         A+      AE    
Sbjct: 71  AEALGVWRRYRAYFDALAQLPGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFG 130

Query: 87  --EWKRRFELERAR 98
             + ++R +LER R
Sbjct: 131 DEQRRQRHDLERIR 144


>d1m07a_ d.5.1.1 (A:) Amphibian cytotoxic ribonuclease {Bullfrog
           (Rana catesbeiana) [TaxId: 8400]}
          Length = 111

 Score = 27.5 bits (61), Expect = 1.7
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 212 NKIMKKASFKLSWRCKGENSDQH--KHDIVYFERGNITTAERSSKQISL 258
           N IM    + +  +CK  N+        +     G I     S+ +  L
Sbjct: 20  NTIMDNNIYIVGGQCKRVNTFIISSATTVKAICTGVINMNVLSTTRFQL 68


>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 312

 Score = 28.8 bits (63), Expect = 1.8
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 8/98 (8%)

Query: 301 PRVRAELLTESSYFSFVQTWK--DEKEIL--LLHTKVDLVVTLGGDGTVLWAASIFKG-- 354
           P    +L       S   T K  D        +H   D+++  GGDGT+    +      
Sbjct: 23  PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKP 82

Query: 355 --PVPPIVPFSLGSLGFMTPFHSEHYKDYLDSVLRGPI 390
             P   ++P    +               LD ++ G  
Sbjct: 83  NRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHS 120


>d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein
           MTH1747 {Archaeon Methanobacterium thermoautotrophicum
           [TaxId: 145262]}
          Length = 112

 Score = 27.5 bits (61), Expect = 2.1
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 14/78 (17%)

Query: 38  EKAVQEILQQTPVHGSDDHLIEFSEALRTVAKALRRAAEGKAAAQ-----------AEAA 86
           E+ V E+L+ T  +   +  I   +   +   A RR  E K                   
Sbjct: 34  EEDVLEMLEYTEGNDFRESAISRLK--SSCIHARRRYEEMKEVQDMLAEVIDPVMPTCII 91

Query: 87  EWKRRF-ELERARNLRLE 103
               +  +++ + + RL+
Sbjct: 92  RIFDKLKDVKVSADARLQ 109


>d1nvmb2 d.81.1.1 (B:132-286) Acetaldehyde dehydrogenase
          (acylating) {Pseudomonas sp. [TaxId: 306]}
          Length = 155

 Score = 25.9 bits (57), Expect = 9.1
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 62 EALRTVAKALRR---AAEGKAAAQAEAAEWK 89
          E   T +KA+     AA+GKA      AE  
Sbjct: 43 EFTETTSKAIEVIGGAAKGKAIIIMNPAEPP 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,147,040
Number of extensions: 99107
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 11
Length of query: 579
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 489
Effective length of database: 1,171,896
Effective search space: 573057144
Effective search space used: 573057144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)