BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008049
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 325 DFDS-HATCLVGKFETVDTYYRNCSSSTYVGNVSIPLLCISSLDDPVCTVE 374
DF+S + L+G FE YR+ + T V +P L + L+DPVC E
Sbjct: 549 DFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 325 DFDS-HATCLVGKFETVDTYYRNCSSSTYVGNVSIPLLCISSLDDPVCTVE 374
DF+S + L+G FE YR+ + T V +P L + L+DPVC E
Sbjct: 549 DFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 193 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 242
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 243 LKLILRLVGTPGAELLKKISSESARNYIQSL 273
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 189 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 238
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 239 LKLILRLVGTPGAELLKKISSESARNYIQSL 269
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 194 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 243
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 244 LKLILRLVGTPGAELLKKISSESARNYIQSL 274
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 189 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 238
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 239 LKLILRLVGTPGAELLKKISSESARNYIQSL 269
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 189 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 238
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 239 LKLILRLVGTPGAELLKKISSESARNYIQSL 269
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 187 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 236
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 237 LKLILRLVGTPGAELLKKISSESARNYIQSL 267
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 194 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 243
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 244 LKLILRLVGTPGAELLKKISSESARNYIQSL 274
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 181 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 230
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 231 LKLILRLVGTPGAELLKKISSESARNYIQSL 261
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 194 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 243
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 244 LKLILRLVGTPGAELLKKISSESARNYIQSL 274
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 188 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 237
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 238 LKLILRLVGTPGAELLKKISSESARNYIQSL 268
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 184 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 233
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 234 LKLILRLVGTPGAELLKKISSESARNYIQSL 264
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 184 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 233
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 234 LKLILRLVGTPGAELLKKISSESARNYIQSL 264
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 192 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 241
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 242 LKLILRLVGTPGAELLKKISSESARNYIQSL 272
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 189 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 238
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 239 LKLILRLVGTPGAELLKKISSESARNYIQSL 269
>pdb|1UAY|A Chain A, Crystal Structure Of Type Ii 3-Hydroxyacyl-Coa
Dehydrogenase From Thermus Thermophilus Hb8
pdb|1UAY|B Chain B, Crystal Structure Of Type Ii 3-Hydroxyacyl-Coa
Dehydrogenase From Thermus Thermophilus Hb8
Length = 242
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 191 WNVVVSNHRGLGGVSITSDCFYNAG---WTEDAREVIGYLHHEYPKAPLFAIGTSIGANI 247
+ VVV + R G D Y G ED R + E APLFA+ ++ G +
Sbjct: 27 YRVVVLDLRREG-----EDLIYVEGDVTREEDVRRAVARAQEE---APLFAVVSAAGVGL 78
Query: 248 LVKYLGEEG 256
K LG+EG
Sbjct: 79 AEKILGKEG 87
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 202 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 251
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 252 LKLILRLVGTPGAELLKKISSESARNYIQSL 282
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 193 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 242
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 243 LKLILRLVGTPGAELLKKISSESARNYIQSL 273
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 184 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 233
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 234 LKLILRLVGTPGAELLKKISSESARNYIQSL 264
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 205 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 254
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 255 LKLILRLVGTPGAELLKKISSESARNYIQSL 285
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 201 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 250
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 251 LKLILRLVGTPGAELLKKISSESARNYIQSL 281
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 205 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 254
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 255 LKLILRLVGTPGAELLKKISSESARNYIQSL 285
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 179 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 228
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 229 LKLILRLVGTPGAELLKKISSESARNYIQSL 259
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 180 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 229
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 230 LKLILRLVGTPGAELLKKISSESARNYIQSL 260
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 178 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 227
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 228 LKLILRLVGTPGAELLKKISSESARNYIQSL 258
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 178 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 227
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 228 LKLILRLVGTPGAELLKKISSESARNYIQSL 258
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 201 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 250
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 251 LKLILRLVGTPGAELLKKISSESARNYIQSL 281
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 187 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 236
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 237 LKLILRLVGTPGAELLKKISSESARNYIQSL 267
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 179 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 228
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 229 LKLILRLVGTPGAELLKKISSESARNYIQSL 259
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 187 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 236
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 237 LKLILRLVGTPGAELLKKISSESARNYIQSL 267
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 202 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 251
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 252 LKLILRLVGTPGAELLKKISSESARNYIQSL 282
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 184 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 233
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 234 LKLILRLVGTPGAELLKKISSESARNYIQSL 264
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 187 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 236
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 237 LKLILRLVGTPGAELLKKISSESARNYIQSL 267
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 178 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 227
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 228 LKLILRLVGTPGAELLKKISSESARNYIQSL 258
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 188 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 237
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 238 LKLILRLVGTPGAELLKKISSESARNYIQSL 268
>pdb|1UZB|A Chain A, 1-pyrroline-5-carboxylate Dehydrogenase
pdb|1UZB|B Chain B, 1-pyrroline-5-carboxylate Dehydrogenase
pdb|2EIW|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Proline
pdb|2EIW|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Proline
Length = 516
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 205 SITSDCFYNAG--WTE---DAREVIGYLHHEYPKAPLFAIGTSIGANILVKYLGEEGEKT 259
+ + Y G W E D E I ++ + Y +A A+ A +V Y GE+ E
Sbjct: 115 ELEATLVYEVGKNWVEASADVAEAIDFIEY-YARA---ALRYRYPAVEVVPYPGEDNESF 170
Query: 260 PVA-GAAAICSPWD--------LLIGDRFIGRRLIQKIYDRALTIGLQDYAQLHE 305
V GA + +PW+ +++G +G +I K + A+ +G + + HE
Sbjct: 171 YVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHE 225
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 145 PGDVFHANNFISKDDTTPIAIVIPGLTSDSAASYIRHLVF---NTAKRGWNVVVSNHRGL 201
P V +N + + +TP+ ++ PG +IR V + K G NV + H
Sbjct: 509 PVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILF 568
Query: 202 GGVSITSDCFYNAGWTEDAREVIG 225
G T D Y W E A+++ G
Sbjct: 569 YGSRNTDDFLYQDEWPEYAKKLDG 592
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 145 PGDVFHANNFISKDDTTPIAIVIPGLTSDSAASYIRHLVF---NTAKRGWNVVVSNHRGL 201
P V +N + + +TP+ ++ PG +IR V + K G NV + H
Sbjct: 509 PVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILF 568
Query: 202 GGVSITSDCFYNAGWTEDAREVIG 225
G T D Y W E A+++ G
Sbjct: 569 YGSRNTDDFLYQDEWPEYAKKLDG 592
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 182 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 231
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 232 LKLILRLVGTPGAELLKKISSESARNYIQSL 262
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 188 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 237
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 238 LKLILRLVGTPGAELLKKISSESARNYIQSL 268
>pdb|2BHP|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad.
pdb|2BHP|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad.
pdb|2BJK|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Citrate.
pdb|2BJK|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Citrate.
pdb|2IY6|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With
Bound Citrate
pdb|2IY6|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With
Bound Citrate
pdb|2EHQ|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadp
pdb|2EHQ|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadp
pdb|2EJ6|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
D-Proline
pdb|2EJ6|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
D-Proline
pdb|2BHQ|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Product Glutamate.
pdb|2BHQ|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Product Glutamate.
pdb|2J5N|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophirus With Bound Inhibitor Glycine And Nad.
pdb|2J5N|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophirus With Bound Inhibitor Glycine And Nad.
pdb|2EIT|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine And Nad
pdb|2EIT|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine And Nad
pdb|2EHU|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Inhibitor
L-Serine
pdb|2EHU|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nad And Inhibitor
L-Serine
pdb|2EII|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Valine And Nad.
pdb|2EII|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Valine And Nad
Length = 516
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 205 SITSDCFYNAG--WTE---DAREVIGYLHHEYPKAPLFAIGTSIGANILVKYLGEEGEKT 259
+ + Y G W E D E I ++ + Y +A A+ A +V Y GE+ E
Sbjct: 115 ELEATLVYEVGKNWVEASADVAEAIDFIEY-YARA---ALRYRYPAVEVVPYPGEDNESF 170
Query: 260 PVA-GAAAICSPWD--------LLIGDRFIGRRLIQKIYDRALTIGLQDYAQLHE 305
V GA + +PW+ +++G +G +I K + A+ +G + + HE
Sbjct: 171 YVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHE 225
>pdb|2BJA|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2BJA|B Chain B, Crystal Analysis Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus With Bound Nadh
pdb|2J40|A Chain A, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2J40|B Chain B, 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus
Thermophilus With Bound Inhibitor L-Proline And Nad.
pdb|2EJD|A Chain A, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJD|B Chain B, Crystal Analysis Of Delta1-Pyrroline-5-Carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-Alanine
pdb|2EJL|A Chain A, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
pdb|2EJL|B Chain B, Crystal Analysis Of Delta1-pyrroline-5-carboxylate
Dehydrogenase From Thermus Thermophilus With Bound
L-serine
Length = 516
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 205 SITSDCFYNAG--WTE---DAREVIGYLHHEYPKAPLFAIGTSIGANILVKYLGEEGEKT 259
+ + Y G W E D E I ++ + Y +A A+ A +V Y GE+ E
Sbjct: 115 ELEATLVYEVGKNWVEASADVAEAIDFIEY-YARA---ALRYRYPAVEVVPYPGEDNESF 170
Query: 260 PVA-GAAAICSPWD--------LLIGDRFIGRRLIQKIYDRALTIGLQDYAQLHE 305
V GA + +PW+ +++G +G +I K + A+ +G + + HE
Sbjct: 171 YVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHE 225
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 93 YLVTPWLSSPHIQTAFLHFFGRPPCFSYRRQLFRLSDGGMIALDWLMGSTAGPG-DVFHA 151
Y+ T W +P I ++H+ Q + G I + L G T PG D
Sbjct: 188 YVATRWYRAPEIMLNWMHY----------NQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ 237
Query: 152 NNFISKDDTTPIAIVIPGLTSDSAASYIRHL 182
I + TP A ++ ++S+SA +YI+ L
Sbjct: 238 LKLILRLVGTPGAELLKKISSESARNYIQSL 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,352,229
Number of Sequences: 62578
Number of extensions: 740544
Number of successful extensions: 1564
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 66
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)