BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008050
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 169/289 (58%), Gaps = 7/289 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + G ++S DG +A++S VK+W+ Q L GH+ V FSP
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400
+A++S D+T +LWN +G LL T GH + +AF P G+ + + S DKT +LW+ +
Sbjct: 234 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN- 292
Query: 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
G L GHS SV+G+AF PDG AS D ++W+ R G+ + L GH V G++
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVA 351
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
FSP+G +A+ +D T ++W+ R + L + HS+ + V F P +G + + S D TV
Sbjct: 352 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 409
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
K+W+ R+ +L+++L+GH + V + PD+Q+IA+ S D+ +KLW+ RN
Sbjct: 410 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RN 456
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 9/294 (3%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + G ++S DG +A++S VK+W+ Q L GH+ V FSP
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400
+A++S D+T +LWN +G LL T GH + +AF P G+ + + S DKT +LW+ +
Sbjct: 111 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 169
Query: 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
G L GHS SV+G+AF PDG AS D ++W+ R G+ + L GH V G++
Sbjct: 170 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 228
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
FSP+G +A+ +D T ++W+ R + L + HS+ ++ V F P +G + + S D TV
Sbjct: 229 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTV 286
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEH 574
K+W+ R+ +L+++L+GH + V + PD Q+IA+ S D+ +KLW N+ +H
Sbjct: 287 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQH 336
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 164/279 (58%), Gaps = 7/279 (2%)
Query: 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR 350
G ++S DG +A++S VK+W+ Q L GH+ V FSP +A++S D+
Sbjct: 21 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 79
Query: 351 TARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH 410
T +LWN +G LL T GH + +AF P G+ + + S DKT +LW+ + G L GH
Sbjct: 80 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH 138
Query: 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT 470
S SV+G+AF PDG AS D ++W+ R G+ + L GH V G++FSP+G +A+
Sbjct: 139 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 197
Query: 471 GGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530
+D T ++W+ R + L + HS+ + V F P +G + + S D TVK+W+ R+ +L
Sbjct: 198 ASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQL 254
Query: 531 VKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
+++L+GH + V + PD Q+IA+ S D+ +KLW+ RN
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RN 292
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 165/286 (57%), Gaps = 6/286 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + G ++S DG +A++S VK+W+ Q L GH+ V FSP
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400
+A++S D+T +LWN +G LL T GH + +AF P G+ + + S DKT +LW+ +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 415
Query: 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
G L GHS SV+G+AF PD AS D ++W+ R G+ + L GH V G++
Sbjct: 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 474
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
FSP+G +A+ +D T ++W+ R + L + HS+ + V F P +G + + S D TV
Sbjct: 475 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 532
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
K+W+ R+ +L+++L+GH + V + PD Q+IA+ S D+ +KLW+
Sbjct: 533 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 166/289 (57%), Gaps = 7/289 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + G ++S DG +A++S VK+W+ Q L GH+ V F P
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400
+A++S D+T +LWN +G LL T GH + +AF P G+ + + S DKT +LW+ +
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 333
Query: 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
G L GHS SV+G+AF PDG AS D ++W+ R G+ + L GH V G++
Sbjct: 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 392
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
FSP+G +A+ +D T ++W+ R + L + HS+ + V F P + + + S D TV
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTV 450
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
K+W+ R+ +L+++L+GH + V + PD Q+IA+ S D+ +KLW+ RN
Sbjct: 451 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 497
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 165/289 (57%), Gaps = 7/289 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + G ++S DG +A++S VK+W+ Q L GH+ V FSP
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400
+A++S D+T +LWN +G LL T GH + +AF P G+ + + S DKT +LW+ +
Sbjct: 152 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 210
Query: 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
G L GHS SV G+AF PDG AS D ++W+ R G+ + L GH V G++
Sbjct: 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVA 269
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
F P+G +A+ +D T ++W+ R + L + HS+ + V F P +G + + S D TV
Sbjct: 270 FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTV 327
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
K+W+ R+ + +++L+GH + V + PD Q+IA+ S D+ +KLW+ RN
Sbjct: 328 KLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 374
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 165/289 (57%), Gaps = 7/289 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G ++G ++ DG +A++S VK+W+ Q L GH+ V FSP
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400
+A++S D+T +LWN +G L T GH + +AF P G+ + + S DKT +LW+ +
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 374
Query: 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
G L GHS SV G+AF PDG AS D ++W+ R G+ + L GH V G++
Sbjct: 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 433
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
FSP+ +A+ +D T ++W+ R + L + HS+ + V F P +G + + S D TV
Sbjct: 434 FSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 491
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
K+W+ R+ +L+++L+GH + V + PD Q+IA+ S D+ +KLW+ RN
Sbjct: 492 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RN 538
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 146/246 (59%), Gaps = 6/246 (2%)
Query: 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY 383
L+ H+ V FSP +A++S D+T +LWN +G LL T GH + +AF P G+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 384 LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443
+ + S DKT +LW+ + G L GHS SV G+AF PDG AS D ++W+ R G
Sbjct: 72 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 444 RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKF 503
+ + L GH V G++FSP+G +A+ +D T ++W+ R + L + HS+ + V F
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF 188
Query: 504 EPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIK 563
P +G + + S D TVK+W+ R+ +L+++L+GH + V + PD Q+IA+ S D+ +K
Sbjct: 189 SP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 564 LWSTRN 569
LW+ RN
Sbjct: 247 LWN-RN 251
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 123/207 (59%), Gaps = 6/207 (2%)
Query: 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD 422
N + H + +AF P G+ + + S DKT +LW+ + G L GHS SV+G+AF PD
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPD 68
Query: 423 GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482
G AS D ++W+ R G+ + L GH V G++FSP+G +A+ +D T ++W+
Sbjct: 69 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 126
Query: 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVT 542
R + L + HS+ + V F P +G + + S D TVK+W+ R+ +L+++L+GH + V
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 184
Query: 543 SLDIHPDEQSIATVSHDRWIKLWSTRN 569
+ PD Q+IA+ S D+ +KLW+ RN
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWN-RN 210
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 153/293 (52%), Gaps = 6/293 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + +S +S +G LA+SS ++KIW + + GH +DV +S S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 341 NHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399
N + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+WDV
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKPVLG 458
TG+ L HS V + F+ DGSL S D L R+WD +G+ + L + PV
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVTGSY 516
+ FSPNG ++ DNT ++WD K K L H N F G ++V+GS
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%)
Query: 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF 419
+L+ T GH ++ + F P+G++L ++S DK ++W G GH + +A+
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 420 HPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
D +L S D ++WD+ +G+ + L+GH V +F+P + +G D + RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHE 538
WD++ L +PAHS+ +S V F ++G +V+ SYD ++W + +K+L
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 539 AKVTSLDIHPDEQSIATVSHDRWIKLW 565
V+ + P+ + I + D +KLW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 271
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 509 YFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
YF T S VK ++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 15 YFQGTQSKPTPVK----PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 259
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 255
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 6/293 (2%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T +G + +S +S +G LA+SS ++KIW + + GH +DV +S S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 341 NHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399
N + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+WDV
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKPVLG 458
TG+ L HS V + F+ DGSL S D L R+WD +G+ + L + PV
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVTGSY 516
+ FSPNG ++ DN ++WD K K L H N F G ++V+GS
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%)
Query: 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF 419
+L+ T GH ++ + F P+G++L ++S DK ++W G GH + +A+
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 420 HPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
D +L S D ++WD+ +G+ + L+GH V +F+P + +G D + RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHE 538
WD++ L +PAHS+ +S V F ++G +V+ SYD ++W + +K+L
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 539 AKVTSLDIHPDEQSIATVSHDRWIKLW 565
V+ + P+ + I + D +KLW
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLW 222
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 152/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA SS ++KIW + + GH +DV +S
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKLW +
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A S D+ IK+W
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW 53
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKL+ +
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 6/296 (2%)
Query: 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS 337
L T +G + +S +S +G LA+SS ++KIW + + GH +DV +S
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 338 PVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
SN + ++S D+T ++W+ + G L T +GH + + F+P + + SFD++ R+W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKP 455
DV TG L HS V + F+ DGSL S D L R+WD +G+ + L + P
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVT 513
V + FSPNG ++ DNT ++WD K K L H N F G ++V+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWST 567
GS D V +W+ + ++V+ L GH V S HP E IA+ + +D+ IKL+ +
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
++ L +L+GH V+S+ P+ + +A+ S D+ IK+W
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 146/307 (47%), Gaps = 22/307 (7%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH 342
SG P++ + +++ ++S +K+W LKGHT+ D++F
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 164
Query: 343 VATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG 401
+A+ SAD T +LW+ G + T GH ++ ++ P+G ++ + S DKT ++W+V TG
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 402 VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISF 461
+ GH V + + DG+L ASC D RVW + T L H V IS+
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 462 SPN--------------------GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQV 501
+P G L +G D T ++WD+ L + H N + V
Sbjct: 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344
Query: 502 KFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRW 561
F G F+++ + D T++VW ++ + +K+L+ HE VTSLD H + T S D+
Sbjct: 345 LFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403
Query: 562 IKLWSTR 568
+K+W R
Sbjct: 404 VKVWECR 410
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 30/274 (10%)
Query: 282 ESGD-DRPLSG-------CSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATD 333
E+GD +R L G S+ H G LLA+ S +K+W + + GH +
Sbjct: 138 ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS 197
Query: 334 VTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT 392
V+ P +H+ ++S D+T ++W G + TF GH + + + + G + + S D+T
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257
Query: 393 WRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA--------------------SCGLD 432
R+W V T H V I++ P+ S ++ S D
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 317
Query: 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP 492
++WD+ TG ++ L GH V G+ F G + + +D T R+WD + ++ + +
Sbjct: 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377
Query: 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
AH + ++ + F Y +VTGS D TVKVW R
Sbjct: 378 AHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR 410
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 131/276 (47%), Gaps = 20/276 (7%)
Query: 315 MPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLA 373
+PR + AL GH T V F PV + + ++S D T ++W+ + G T +GH D +
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 154
Query: 374 RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433
++F SGK L + S D T +LWD + GH +V ++ P+G S D
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493
++W+++TG + GH + V + + +G +A+ D T R+W + ++ +
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 494 HSNLISQVKFEPQEGY-------------------FLVTGSYDMTVKVWSGRDFKLVKSL 534
H +++ + + P+ Y FL++GS D T+K+W + +L
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Query: 535 SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
GH+ V + H + I + + D+ +++W +NK
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T G D +S S +G+ + ++S +K+W + GH E V +
Sbjct: 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 246
Query: 341 NHVATSSADRTARLWNTDGSLLNT-FQGHLDRLARMAFHPS------------------- 380
+A+ S D+T R+W + H + +++ P
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 381 -GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439
G +L + S DKT ++WDV TG+ L+ GH V G+ FH G SC D RVWD
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483
+ R + L H V + F ++ TG D T ++W+ R
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
+ D LL ++S G + IW K A+ + ++P N+VA D
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 354 LWNTDGSLLNT-----FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
++N N GH L+ F + + T+S D T LWD++TG +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFT 181
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH+ V ++ PD L S DA A++WD+R G GH + I F PNG
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNL---ISQVKFEPQEGYFLVTGSYDMTVKVWSG 525
ATG +D TCR++DLR + L + +H N+ I+ V F + G L+ G D VW
Sbjct: 242 ATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDA 299
Query: 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
L+GH+ +V+ L + D ++AT S D ++K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 11/241 (4%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMP----RLQKFSALKGHTERATDVTFSPVSNHVATSS 347
C+Y+ GN +A L + I+++ ++ L GHT + F N + TSS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 348 ADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406
D T LW+ + G TF GH + ++ P + + + D + +LWDV G+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI---SFSP 463
GH + I F P+G+ A+ DA R++DLR + ++ H + GI SFS
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSK 280
Query: 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+G L G +D C +WD K V+ H N +S + +G + TGS+D +K+W
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIW 339
Query: 524 S 524
+
Sbjct: 340 N 340
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 6/209 (2%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GHL ++ M + + L + S D +WD T ++ S V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 424 SLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
+ A GLD + +++L+T R L GH + F + + T D TC +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL 168
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539
WD+ + H+ + + P F V+G+ D + K+W R+ ++ +GHE+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
+ ++ P+ + AT S D +L+ R
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
+ D LL ++S G + IW K A+ + ++P N+VA D
Sbjct: 74 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 133
Query: 354 LWNTDGSLLNT-----FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
++N N GH L+ F + + T+S D T LWD++TG +
Sbjct: 134 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFT 192
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH+ V ++ PD L S DA A++WD+R G GH + I F PNG
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNL---ISQVKFEPQEGYFLVTGSYDMTVKVWSG 525
ATG +D TCR++DLR + L + +H N+ I+ V F + G L+ G D VW
Sbjct: 253 ATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDA 310
Query: 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
L+GH+ +V+ L + D ++AT S D ++K+W+
Sbjct: 311 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 11/241 (4%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMP----RLQKFSALKGHTERATDVTFSPVSNHVATSS 347
C+Y+ GN +A L + I+++ ++ L GHT + F N + TSS
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 172
Query: 348 ADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406
D T LW+ + G TF GH + ++ P + + + D + +LWDV G+
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 232
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI---SFSP 463
GH + I F P+G+ A+ DA R++DLR + ++ H + GI SFS
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSK 291
Query: 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+G L G +D C +WD K V+ H N +S + +G + TGS+D +K+W
Sbjct: 292 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIW 350
Query: 524 S 524
+
Sbjct: 351 N 351
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 6/209 (2%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GHL ++ M + + L + S D +WD T ++ S V A+ P G
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 424 SLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
+ A GLD + +++L+T R L GH + F + + T D TC +
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL 179
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539
WD+ + H+ + + P F V+G+ D + K+W R+ ++ +GHE+
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
+ ++ P+ + AT S D +L+ R
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLR 267
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
+ D LL ++S G + IW K A+ + ++P N+VA D
Sbjct: 63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 354 LWNTDGSLLNT-----FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
++N N GH L+ F + + T+S D T LWD++TG +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFT 181
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH+ V ++ PD L S DA A++WD+R G GH + I F PNG
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNL---ISQVKFEPQEGYFLVTGSYDMTVKVWSG 525
ATG +D TCR++DLR + L + +H N+ I+ V F + G L+ G D VW
Sbjct: 242 ATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDA 299
Query: 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
L+GH+ +V+ L + D ++AT S D ++K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 11/241 (4%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMP----RLQKFSALKGHTERATDVTFSPVSNHVATSS 347
C+Y+ GN +A L + I+++ ++ L GHT + F N + TSS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 348 ADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406
D T LW+ + G TF GH + ++ P + + + D + +LWDV G+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI---SFSP 463
GH + I F P+G+ A+ DA R++DLR + ++ H + GI SFS
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSK 280
Query: 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+G L G +D C +WD K V+ H N +S + +G + TGS+D +K+W
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIW 339
Query: 524 S 524
+
Sbjct: 340 N 340
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 6/209 (2%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GHL ++ M + + L + S D +WD T ++ S V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 424 SLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
+ A GLD + +++L+T R L GH + F + + T D TC +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL 168
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539
WD+ + H+ + + P F V+G+ D + K+W R+ ++ +GHE+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
+ ++ P+ + AT S D +L+ R
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
+ D LL ++S G + IW K A+ + ++P N+VA D
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 354 LWNTDGSLLNT-----FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
++N N GH L+ F + + T+S D T LWD++TG +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFT 181
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH+ V ++ PD L S DA A++WD+R G GH + I F PNG
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNL---ISQVKFEPQEGYFLVTGSYDMTVKVWSG 525
ATG +D TCR++DLR + L + +H N+ I+ V F + G L+ G D VW
Sbjct: 242 ATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDA 299
Query: 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
L+GH+ +V+ L + D ++AT S D ++K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 11/241 (4%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMP----RLQKFSALKGHTERATDVTFSPVSNHVATSS 347
C+Y+ GN +A L + I+++ ++ L GHT + F N + TSS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 348 ADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406
D T LW+ + G TF GH + ++ P + + + D + +LWDV G+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI---SFSP 463
GH + I F P+G+ A+ DA R++DLR + ++ H + GI SFS
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSK 280
Query: 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+G L G +D C +WD K V+ H N +S + +G + TGS+D +K+W
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIW 339
Query: 524 S 524
+
Sbjct: 340 N 340
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 6/209 (2%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GHL ++ M + + L + S D +WD T ++ S V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 424 SLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
+ A GLD + +++L+T R L GH + F + + T D TC +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL 168
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539
WD+ + H+ + + P F V+G+ D + K+W R+ ++ +GHE+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
+ ++ P+ + AT S D +L+ R
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 130/281 (46%), Gaps = 11/281 (3%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
+ D LL ++S G + IW K A+ + ++P N+VA D
Sbjct: 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 354 LWNTDGSLLNT-----FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
++N N GH L+ F + + T+S D T LWD++TG +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFT 181
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH+ V ++ PD L S DA A++WD+R G GH + I F PNG
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNL---ISQVKFEPQEGYFLVTGSYDMTVKVWSG 525
ATG +D TCR++DLR + L + +H N+ I+ V F + G L+ G D VW
Sbjct: 242 ATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDA 299
Query: 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
L+GH+ +V+ L + D ++AT S D ++K+W+
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 11/241 (4%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMP----RLQKFSALKGHTERATDVTFSPVSNHVATSS 347
C+Y+ GN +A L + I+++ ++ L GHT + F N + TSS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSS 161
Query: 348 ADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406
D T LW+ + G TF GH + ++ P + + + D + +LWDV G+
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI---SFSP 463
GH + I F P+G+ A+ DA R++DLR + ++ H + GI SFS
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSK 280
Query: 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+G L G +D C +WD K V+ H N +S + +G + TGS+D +K+W
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIW 339
Query: 524 S 524
+
Sbjct: 340 N 340
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 6/209 (2%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GHL ++ M + + L + S D +WD T ++ S V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 424 SLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479
+ A GLD + +++L+T R L GH + F + + T D TC +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCAL 168
Query: 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539
WD+ + H+ + + P F V+G+ D + K+W R+ ++ +GHE+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
+ ++ P+ + AT S D +L+ R
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 19/285 (6%)
Query: 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVA 344
DD ++ + GN + + S +K+WS + L GHT N +
Sbjct: 118 DDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIII 173
Query: 345 TSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE 403
+ S DRT ++WN + G ++T GH + M H K + + S D T R+WD++TG
Sbjct: 174 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQC 231
Query: 404 LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP 463
L + GH +V + + DG S D + +VWD T + L+GH V + F
Sbjct: 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-- 287
Query: 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+G H+ +G D + R+WD+ ++ + H +L S ++ + LV+G+ D TVK+W
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIW 344
Query: 524 SGRDFKLVKSLSG---HEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
+ + +++L G H++ VT L ++ + T S D +KLW
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 387
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 122/257 (47%), Gaps = 13/257 (5%)
Query: 313 WSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDR 371
W L+ LKGH + N + + S D T ++W+ G L T GH
Sbjct: 103 WRRGELKSPKVLKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 372 LARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL 431
+ + G+T D+T ++W+ +TG + GH+ +V + H ++ S
Sbjct: 162 VWSSQMRDNIIISGST--DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS--R 217
Query: 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491
DA RVWD+ TG+ + L GHV V + + +G + +G D ++WD L+ +
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275
Query: 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ 551
H+N + ++F+ G +V+GS D +++VW + +L+GH++ + +++ +
Sbjct: 276 QGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDN 330
Query: 552 SIATVSHDRWIKLWSTR 568
+ + + D +K+W +
Sbjct: 331 ILVSGNADSTVKIWDIK 347
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 15/240 (6%)
Query: 299 NLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358
N++ + S +K+W+ + L GHT +T V + S D T R+W+ +
Sbjct: 170 NIIISGSTDRTLKVWNAETGECIHTLYGHT--STVRCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 359 -GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGI 417
G L+ GH+ + + + G+ + + ++D ++WD +T L +GH+ VY +
Sbjct: 228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477
F DG S LD RVWD+ TG I L GH G+ N L +G D+T
Sbjct: 286 QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTV 341
Query: 478 RIWDLRKRKSLYVIPA---HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534
+IWD++ + L + H + ++ ++F F++T S D TVK+W + + +++L
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 10/212 (4%)
Query: 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424
+GH D + G + + S D T ++W TG L GH+ V+ +
Sbjct: 114 LKGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 172
Query: 425 LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484
++ S D +VW+ TG I L GH V + + +G D T R+WD+
Sbjct: 173 ISGS--TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIET 228
Query: 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
+ L+V+ H + V+++ G +V+G+YD VKVW + +L GH +V SL
Sbjct: 229 GQCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 545 DIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576
D + + S D I++W H +
Sbjct: 286 QF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 296 HDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLW 355
+DG + + + +VK+W L+GHT R + F + HV + S D + R+W
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVW 304
Query: 356 NTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG---HS 411
+ + G+ ++T GH + M + L + + D T ++WD+ TG L +G H
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 362
Query: 412 RSVYGIAFHPDGSLAASCGLDALARVWDLRTG---RSILALE 450
+V + F+ + + +S D ++WDL+TG R+++ LE
Sbjct: 363 SAVTCLQFNKNFVITSS--DDGTVKLWDLKTGEFIRNLVTLE 402
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352
S DG + + SL +++W + L GH + + N + + +AD T
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTV 341
Query: 353 RLWNTD-GSLLNTFQG---HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG 401
++W+ G L T QG H + + F+ + ++ T+S D T +LWD+ TG
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 392
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 12/284 (4%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
+ D + +SS G V +W K A+ ++P +A D
Sbjct: 72 WCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131
Query: 354 LW-------NTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406
++ + + H + L+ +F S + T S D T LWDV++G L
Sbjct: 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS 191
Query: 407 QEGHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPN 464
GH V + P G+ S G D A VWD+R+G+ + A E H V + + P+
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS 251
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI--SQVKFEPQEGYFLVTGSYDMTVKV 522
G A+G +D TCR++DLR + + + S + S V F G L G D T+ V
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF-SLSGRLLFAGYNDYTINV 310
Query: 523 WSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
W V L GHE +V++L + PD + + S D +++W+
Sbjct: 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 5/197 (2%)
Query: 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSP--VSNHVATS 346
LS CS+++ + T+S G +W + Q + GH + +P N +
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 347 SADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV--DTGVE 403
D+ A +W+ G + F+ H + + ++PSG + S D T RL+D+ D V
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA 276
Query: 404 LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP 463
+ +E + F G L + D VWD+ G + L GH V + SP
Sbjct: 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP 336
Query: 464 NGYHLATGGEDNTCRIW 480
+G +G D+T R+W
Sbjct: 337 DGTAFCSGSWDHTLRVW 353
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 15/173 (8%)
Query: 408 EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH 467
+GH V + + D S D VWD T A+ V+ +++P+G
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA 120
Query: 468 LATGGEDNTCRIWDLR---------KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM 518
+A GG DN C ++ L K+KS + H+N +S F + L T S D
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKS---VAMHTNYLSACSFTNSDMQIL-TASGDG 176
Query: 519 TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWSTRN 569
T +W +L++S GH A V LD+ P E VS D+ +W R+
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 7/212 (3%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GH +++ M + + + ++S D +WD T + V A+ P G
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 424 SLAASCGLDALARVWDLRTGRS------ILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477
A GLD V+ L ++ ++ H + SF+ + + T D TC
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTC 178
Query: 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536
+WD+ + L H + + P E G V+G D VW R + V++
Sbjct: 179 ALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238
Query: 537 HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
HE+ V S+ +P + A+ S D +L+ R
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576
K ++L GH KV +D D++ I + S D + +W + EHA+
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV 102
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 12/227 (5%)
Query: 361 LLNTFQGHLD-RLARMAFHPSGKYLGTTSFDKTWRLWDVDTG---VELLLQEGHSRSVYG 416
LL H D R +A++P+G L + D+ R+W + + +L EGH R+V
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK 66
Query: 417 IAFHPDGSLAASCGLDALARVWDLRTG--RSILALEGHVKPVLGISFSPNGYHLATGGED 474
+A+ P G+ AS DA +W + LEGH V ++++P+G LAT D
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 475 NTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR--DFK 529
+ +W++ + + + V+ +H+ + V + P + L + SYD TVK++ D+
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV 185
Query: 530 LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576
+L GHE+ V SL P Q +A+ S DR +++W G+E +
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
Query: 298 GNLLATSSLSGVVKIWSM---PRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354
G LLA+ ++IW + K +GH V +SP N++A++S D T +
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 355 WNT---DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE---LLLQE 408
W D + T +GH + + +A+ PSG L T S DK+ +W+VD E + +
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGY 466
H++ V + +HP L AS D +++ + LEGH V ++F P+G
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207
Query: 467 HLATGGEDNTCRIW 480
LA+ +D T RIW
Sbjct: 208 RLASCSDDRTVRIW 221
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 33/273 (12%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR--LQKFSALKGHTERATDVTFSPVSN 341
G R + ++S GN LA++S IW + + + L+GH V ++P N
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 342 HVATSSADRTARLWNTDG----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW- 396
+AT S D++ +W D ++ H + + +HPS + L + S+D T +L+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 397 -DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR-------------- 441
+ D V EGH +V+ +AF P G ASC D R+W
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238
Query: 442 -TGRSILALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK---------SLYV 490
+ + I L G H + + I++ LAT D+ R++ + ++
Sbjct: 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
AHS ++ V + P+E L + S D V W
Sbjct: 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 27/243 (11%)
Query: 330 RATDVTFSPVSNHVATSSADRTARLWNTDG------SLLNTFQGHLDRLARMAFHPSGKY 383
R + ++P +A+ DR R+W T+G S+L+ +GH + ++A+ P G Y
Sbjct: 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNY 75
Query: 384 LGTTSFDKTWRLW--DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441
L + SFD T +W + D + EGH V +A+ P G+L A+C D VW++
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 442 TG---RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA----H 494
+ L H + V + + P+ LA+ D+T ++ R+ + +V A H
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL--YREEEDDWVCCATLEGH 193
Query: 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554
+ + + F+P G L + S D TV++W + L G+E V P + I
Sbjct: 194 ESTVWSLAFDPS-GQRLASCSDDRTVRIWR-------QYLPGNEQGVACSGSDPSWKCIC 245
Query: 555 TVS 557
T+S
Sbjct: 246 TLS 248
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF---SALKGHTERATDVTFS 337
T G + + +++ GNLLAT S V +W + ++ S L HT+ V +
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 338 PVSNHVATSSADRTARLWNT---DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWR 394
P +A++S D T +L+ D T +GH + +AF PSG+ L + S D+T R
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 395 LW----------------DVDTGVELLLQEGHSRSVYGIAF-HPDGSLAASCGLDAL 434
+W D L HSR++Y IA+ G+LA +CG DA+
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 459 ISFSPNGYHLATGGEDNTCRIW----DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTG 514
++++P G LA+ G D RIW D KS+ + H + +V + P G +L +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWSPC-GNYLASA 79
Query: 515 SYDMTVKVWSGR--DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572
S+D T +W DF+ V +L GHE +V S+ P +AT S D+ + +W + +
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 573 EHAMDV 578
+ V
Sbjct: 140 YECVSV 145
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 121/265 (45%), Gaps = 25/265 (9%)
Query: 279 DCTESGDDRPLSGCS-------YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERA 331
+C+ DR L G S S++GN ++S +++W++ Q GHT+
Sbjct: 53 ECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDV 112
Query: 332 TDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ--GHLDRLARMAFHPS--GKYLGTT 387
V FSP + + + D R+WN G ++T H D ++ + F PS + +
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 388 SFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447
+D ++WD+ TG + +GH+ V + PDGSL AS D +AR+WDL G ++
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Query: 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY-VIPAHSNLISQVKFEPQ 506
+ P+ I FSPN Y + E RI+DL + + + P H K P+
Sbjct: 233 EMAAGA-PINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQG---SKKIVPE 287
Query: 507 --------EGYFLVTGSYDMTVKVW 523
+G L +G D ++VW
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 408 EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH 467
EGHS V +A +G+ A S D R+W+L+ G+ GH K VL ++FSP+
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 468 LATGGEDNTCRIWDLRKRKSLYVIP--AHSNLISQVKFEPQ-EGYFLVTGSYDMTVKVWS 524
+ +GG DN R+W++ K + ++ + AH++ +S V+F P + +V+G +D VKVW
Sbjct: 124 IVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 525 GRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
+LV L GH VTS+ + PD A+ D +LW
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
+ HS +S V G F V+ S+D ++++W+ ++ + GH V S+ PD
Sbjct: 63 LEGHSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 551 QSIATVSHDRWIKLWSTRNK 570
+ I + D +++W+ + +
Sbjct: 122 RQIVSGGRDNALRVWNVKGE 141
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 126/286 (44%), Gaps = 38/286 (13%)
Query: 269 ALKKVESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHT 328
A K E+L + S D S C +S DG LAT + +++IW + + L+GH
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVC-FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 165
Query: 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHL-----DRLARMAFHPS-GK 382
+ + + P + + + S DRT R+W+ L T Q L D + +A P GK
Sbjct: 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWD-----LRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 383 YLGTTSFDKTWRLWDVDTG--VELLLQE-----GHSRSVYGIAFHPDGSLAASCGLDALA 435
Y+ S D+ R+WD +TG VE L E GH SVY + F DG S LD
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 436 RVWDLR------------TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483
++W+L+ +G + GH VL ++ + N ++ +G +D WD +
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
Query: 484 KRKSLYVIPAHSNLISQV------KFEPQEGYFLVTGSYDMTVKVW 523
L ++ H N + V P+ F TGS D ++W
Sbjct: 341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIW 385
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 414 VYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473
+ + F PDG A+ D L R+WD+ + ++ L+GH + + + + P+G L +G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 474 DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS 533
D T RIWDLR + + ++ V P +G ++ GS D V+VW LV+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 534 L-------SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573
L +GH+ V S+ D QS+ + S DR +KLW+ +N ++
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 118/265 (44%), Gaps = 35/265 (13%)
Query: 334 VTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT 392
V FSP +AT + DR R+W+ + ++ QGH + + + PSG L + S D+T
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 393 WRLWDVDTG---VELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSILA 448
R+WD+ TG + L +++G V +A P DG A+ LD RVWD TG +
Sbjct: 189 VRIWDLRTGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 449 LE-------GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK--RKSLYVIP------- 492
L+ GH V + F+ +G + +G D + ++W+L+ KS P
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 493 ---AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL----- 544
H + + V + Y L +GS D V W + + L GH V S+
Sbjct: 305 TYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 545 -DIHPDEQSIATVSHDRWIKLWSTR 568
+ P+ AT S D ++W +
Sbjct: 364 SSLGPEYNVFATGSGDCKARIWKYK 388
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 46/283 (16%)
Query: 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGSL----------------LNTFQGHLD 370
HT V FS ++AT T +DGSL LNT
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 371 RLA--RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428
L + F P GK+L T + D+ R+WD++ +++ +GH + +Y + + P G S
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKS 487
D R+WDLRTG+ L L V ++ SP +G ++A G D R+WD ++
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWD---SET 238
Query: 488 LYVI----------PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR------DFKLV 531
+++ H + + V F ++G +V+GS D +VK+W+ + D K
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 532 KSLS------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
S + GH+ V S+ +++ I + S DR + W +
Sbjct: 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 16/256 (6%)
Query: 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSG 381
AL+GH+ +DV S + S D T RLW+ T G+ F GH + +AF
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHPDGS--LAASCGLDALARVW 438
+ + + S DKT +LW+ + +Q E HS V + F P+ S + SCG D L +VW
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Query: 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI 498
+L + GH + ++ SP+G A+GG+D +WDL + K LY + ++I
Sbjct: 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDII 259
Query: 499 SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL---------SGHEAKVTSLDIHPD 549
+ + F P Y+L + ++K+W +V L + TSL D
Sbjct: 260 NALCFSPNR-YWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317
Query: 550 EQSIATVSHDRWIKLW 565
Q++ D +++W
Sbjct: 318 GQTLFAGYTDNLVRVW 333
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 22/245 (8%)
Query: 295 SHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354
S DG + S G +++W + GHT+ V FS + + + S D+T +L
Sbjct: 95 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154
Query: 355 WNTDGSLLNTFQ--GHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTGVELLLQEGH 410
WNT G T Q H + ++ + F P S + + +DK ++W++ GH
Sbjct: 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214
Query: 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL-- 468
+ + + PDGSL AS G D A +WDL G+ + L+G + + FSPN Y L
Sbjct: 215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCA 273
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS-QVKFEPQE---------GYFLVTGSYDM 518
ATG + +IWDL + + V +IS K EP + G L G D
Sbjct: 274 ATG---PSIKIWDLEGK--IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328
Query: 519 TVKVW 523
V+VW
Sbjct: 329 LVRVW 333
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 8/214 (3%)
Query: 360 SLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLW-----DVDTGVELLLQEGHSRS 413
+L T +GH + ++A P + + S DKT +W + + G+ GHS
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 414 VYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473
V + DG A S D R+WDL TG + GH K VL ++FS + + +G
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 474 DNTCRIWD-LRKRKSLYVIPAHSNLISQVKFEPQEGY-FLVTGSYDMTVKVWSGRDFKLV 531
D T ++W+ L K +HS +S V+F P +V+ +D VKVW+ + KL
Sbjct: 149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 532 KSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
+ GH + ++ + PD A+ D LW
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 16/256 (6%)
Query: 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSG 381
AL+GH+ +DV S + S D T RLW+ T G+ F GH + +AF
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHPDGS--LAASCGLDALARVW 438
+ + + S DKT +LW+ + +Q E HS V + F P+ S + SCG D L +VW
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Query: 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI 498
+L + GH + ++ SP+G A+GG+D +WDL + K LY + ++I
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDII 236
Query: 499 SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL---------SGHEAKVTSLDIHPD 549
+ + F P Y+L + ++K+W +V L + TSL D
Sbjct: 237 NALCFSPNR-YWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 294
Query: 550 EQSIATVSHDRWIKLW 565
Q++ D +++W
Sbjct: 295 GQTLFAGYTDNLVRVW 310
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 22/245 (8%)
Query: 295 SHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354
S DG + S G +++W + GHT+ V FS + + + S D+T +L
Sbjct: 72 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 131
Query: 355 WNTDGSLLNTFQ--GHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTGVELLLQEGH 410
WNT G T Q H + ++ + F P S + + +DK ++W++ GH
Sbjct: 132 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 191
Query: 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL-- 468
+ + + PDGSL AS G D A +WDL G+ + L+G + + FSPN Y L
Sbjct: 192 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCA 250
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS-QVKFEPQE---------GYFLVTGSYDM 518
ATG + +IWDL + + V +IS K EP + G L G D
Sbjct: 251 ATG---PSIKIWDLEGK--IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 305
Query: 519 TVKVW 523
V+VW
Sbjct: 306 LVRVW 310
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 8/214 (3%)
Query: 360 SLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLW-----DVDTGVELLLQEGHSRS 413
+L T +GH + ++A P + + S DKT +W + + G+ GHS
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 414 VYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473
V + DG A S D R+WDL TG + GH K VL ++FS + + +G
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 474 DNTCRIWD-LRKRKSLYVIPAHSNLISQVKFEPQEGY-FLVTGSYDMTVKVWSGRDFKLV 531
D T ++W+ L K +HS +S V+F P +V+ +D VKVW+ + KL
Sbjct: 126 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 532 KSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
+ GH + ++ + PD A+ D LW
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 8/197 (4%)
Query: 295 SHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354
S DG + S G +++W + GHT+ V FS + + ++S DRT +L
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
Query: 355 WNTDGSLLNTF----QGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVELLLQE 408
WNT G T +GH D ++ + F P+ + + S+DKT ++W++
Sbjct: 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH+ V +A PDGSL AS G D + +WDL G+ + +LE + + + FSPN Y L
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWL 617
Query: 469 ATGGEDNTCRIWDLRKR 485
E + +IWDL +
Sbjct: 618 CAATE-HGIKIWDLESK 633
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 12/216 (5%)
Query: 361 LLNTFQGHLDRLARMAFH-PSGKYLGTTSFDKTWRLW-----DVDTGVELLLQEGHSRSV 414
L T + H D + +A + + + S DK+ LW D GV GHS V
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 415 YGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED 474
+ DG A S D R+WDL G S GH K VL ++FS + + + D
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 475 NTCRIWDLRKRKSLYVIP----AHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGRDFK 529
T ++W+ + Y I H + +S V+F P +V+ S+D TVKVW+ + K
Sbjct: 494 RTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 530 LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
L +L+GH V+++ + PD A+ D + LW
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 14/249 (5%)
Query: 297 DGNLLATSSLSGVVKIWSMPRLQKFSA-----LKGHTERATDVTFSPVSNHVATSSADRT 351
+ +++ ++S + +W + + K L GH+ DV S + S D
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 352 ARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG- 409
RLW+ G F GH + +AF + + + S D+T +LW+ + + EG
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 410 --HSRSVYGIAFHPDG--SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG 465
H V + F P+ S D +VW+L + L GH V ++ SP+G
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 466 YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525
A+GG+D +WDL + K LY + A+S +I + F P Y+L + + +K+W
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNR-YWLCAAT-EHGIKIWDL 630
Query: 526 RDFKLVKSL 534
+V+ L
Sbjct: 631 ESKSIVEDL 639
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 468 LATGGEDNTCRIWDLRKRKSLYVIP-----AHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522
+ + D + +W L K Y + HS+ + V +G F ++GS+D +++
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRL 456
Query: 523 WSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567
W + GH V S+ D + I + S DR IKLW+T
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 28/300 (9%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
++ + N + ++S G + +W+ QK A+K H + F+P VA D
Sbjct: 74 WTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133
Query: 354 LWNT------DGSL--LNTFQGHLDRLARMAFHPSGKY-LGTTSFDKTWRLWDVDTGVEL 404
++N DG++ GH + + P + L T S D+T LWDV TG +
Sbjct: 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193
Query: 405 LL-----QEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLR-TGRSILALEGHVKPVL 457
+ GH+ V ++ + + ++ S D R+WDLR T R++ GH +
Sbjct: 194 SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253
Query: 458 GISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN-------LISQVKFEPQEGYF 510
+ F P+G TG +D TCR++D+R L V + +++ V F G
Sbjct: 254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRL 312
Query: 511 LVTGSYDMTVKVWSGRDFKLVKSL----SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
L G + VW ++V +L + HE +++ L + D ++ T S D+ +K+W+
Sbjct: 313 LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 15/234 (6%)
Query: 350 RTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
RTA +N TD T QGH ++ + + P ++ + S D +W+ T + +
Sbjct: 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK 105
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDL-----RTGRSILA--LEGHVKPVLGISF 461
H V AF P+G A GLD+ +++L R G ++ L GH +
Sbjct: 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY 165
Query: 462 SPNG-YHLATGGEDNTCRIWDLRKRKSLYVI-----PAHSNLISQVKFEPQEGYFLVTGS 515
P+ L TG D TC +WD+ + + + H+ + + ++GS
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 516 YDMTVKVWSGR-DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
D TV++W R + V++ GHE + S+ PD Q T S D +L+ R
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 13/166 (7%)
Query: 295 SHDGNLLATSSLSGVVKIWSMPRLQK-FSALKGHTERATDVTFSPVSNHVATSSADRTAR 353
S + N+ + S V++W + + GH V F P T S D T R
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274
Query: 354 LWNT-DGSLLNTFQGHLDR-------LARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL 405
L++ G L + DR + +AF SG+ L + +WD +L
Sbjct: 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL 334
Query: 406 ----LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447
LQ H + + DGS + D ++W R I+
Sbjct: 335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578
D ++L GH KV SLD P++ I + S D + +W+ HA+ +
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL 106
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 26/287 (9%)
Query: 296 HDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLW 355
+D + + +KIW L+ L GHT + + + T S+D T R+W
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVW 198
Query: 356 NTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE---GHS 411
+ + G +LNT H + + + F+ + T S D++ +WD+ + ++ L+ GH
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256
Query: 412 RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATG 471
+V + F D S D +VW+ T + L GH + + + + + +G
Sbjct: 257 AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSG 312
Query: 472 GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW---SGRDF 528
DNT R+WD+ L V+ H L+ ++F+ + +V+G+YD +KVW + D
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDP 369
Query: 529 K------LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
+ +++L H +V L DE I + SHD I +W N
Sbjct: 370 RAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
R SL I S V + +V+G D T+K+W + + L+GH V L
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 179
Query: 545 DIHPDEQSIATVSHDRWIKLWSTRNKGD 572
DE+ I T S D +++W N G+
Sbjct: 180 QY--DERVIITGSSDSTVRVWDV-NTGE 204
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 4/278 (1%)
Query: 291 GCSYSHDGNLLATSSLSGVVKIWSM--PRLQKFSALKGHTERATDVTFSPVSNHVATSSA 348
G + + + T SL +VK+W RL +L+GH V S A+SS
Sbjct: 41 GTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100
Query: 349 DRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ 407
D RLW+ +G + + +AF P +YL T + ++ V++G +
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160
Query: 408 EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH 467
+ + + IA+ PDG AS +D + ++D+ TG+ + LEGH P+ ++FSP+
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL 220
Query: 468 LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527
L T +D +I+D++ + H++ + V F P + +F+ + S D +VKVW
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SSDKSVKVWDVGT 279
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
V + H+ +V + + + I +V D+ I ++
Sbjct: 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%)
Query: 356 NTDGSLLNTFQGHLDRLARMAFHPSGK----YLGTTSFD---KTWRLWDVDTGVELLLQE 408
N G L Q H D + +A+ + K + T S D K W+ D ++ L E
Sbjct: 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-E 77
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH V + +AAS LDA R+WDL G+ I +++ ++FSP+ +L
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF 528
ATG I+ + K Y + I + + P +G +L +G+ D + ++
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATG 196
Query: 529 KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
KL+ +L GH + SL PD Q + T S D +IK++ ++
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 1/245 (0%)
Query: 261 SIDDEIDYALKKVESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK 320
S+DD + + E L L + G + SH + A+SSL +++W + ++
Sbjct: 55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ 114
Query: 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHP 379
++ A + FSP S ++AT + ++ + G + + +A+ P
Sbjct: 115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP 174
Query: 380 SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439
GKYL + + D ++D+ TG L EGH+ + + F PD L + D +++D
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS 499
++ L GH VL ++F P+ H + D + ++WD+ R ++ H + +
Sbjct: 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW 294
Query: 500 QVKFE 504
VK+
Sbjct: 295 GVKYN 299
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 1/190 (0%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352
++S D LAT + G V I+ + +K +L + + +SP ++A+ + D
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 353 RLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS 411
+++ G LL+T +GH + + F P + L T S D +++DV GH+
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 412 RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATG 471
V +AF PD + S D +VWD+ T + H V G+ ++ NG + +
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308
Query: 472 GEDNTCRIWD 481
G+D I+D
Sbjct: 309 GDDQEIHIYD 318
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
T G P+ ++S D LL T+S G +KI+ + L GH +V F P
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Query: 341 NHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397
H +SS+D++ ++W+ + ++TF H D++ + ++ +G + + D+ ++D
Sbjct: 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Query: 458 GISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGY-FLVTGSY 516
G + N + TG D+ ++W R + + + V + + S
Sbjct: 41 GTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100
Query: 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576
D +++W + K +KS+ +L PD Q +AT +H + ++ + E+++
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160
Query: 577 D 577
D
Sbjct: 161 D 161
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 1/175 (0%)
Query: 405 LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPN 464
L+ H+ +VY F DG ASCG D +V+ TG +L ++ H VL +FS +
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV-TGSYDMTVKVW 523
++AT D +IWD K ++ HS ++ F + + L+ TGS D +K+W
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578
+ ++ GH V PD++ +A+ S D ++LW R+ + +++V
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 19/293 (6%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352
+S DG +A+ ++++ +K +K H + FS +++AT SAD+
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 353 RLWNT-DGSLLNTFQGHLDRLARMAFHPSGKY--LGTTSFDKTWRLWDVDTGVELLLQEG 409
++W++ G L++T+ H +++ F + L T S D +LWD++ G
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG---------RSILALEGHVKPVLGI- 459
H+ SV F PD L ASC D R+WD+R+ R L+ E + V I
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 801
Query: 460 ---SFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI-PAHSNLISQVKFEPQEGYFLVTGS 515
S+S +G + + N ++D+ L I H + I F P + + V
Sbjct: 802 KCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 859
Query: 516 YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
V++W+ V GH + V + PD S T S D+ I++W T+
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 3/189 (1%)
Query: 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA 427
H D + F G+ + + DKT +++ +TG +LL + H V AF D S A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 428 SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH--LATGGEDNTCRIWDLRKR 485
+C D ++WD TG+ + + H + V F+ H LATG D ++WDL ++
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLD 545
+ + H+N ++ +F P + L + S D T+++W R KS++ ++S D
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792
Query: 546 IHPDEQSIA 554
D + I
Sbjct: 793 PPEDVEVIV 801
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 132/315 (41%), Gaps = 45/315 (14%)
Query: 292 CSYSHDGNLLATSSLSGVV--KIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD 349
CS+S DG+ + ++ + V+ I + L + GH FSP + + +
Sbjct: 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQ 861
Query: 350 RTARLWNTDGSL-LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD----------- 397
LWN D L + +GHL + + F P G T S D+T R+W+
Sbjct: 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV 921
Query: 398 VDTGVELLLQEGHS--------RSVYGIA-------FHPDGSLAASC-----------GL 431
+ ++++ QE + R + IA + P+ ++ C
Sbjct: 922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981
Query: 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491
D ++ +L R + GH K V I F+ +G L + ED+ ++W+ + ++ +
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-L 1040
Query: 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ 551
AH + F + L++ S+D TVKVW+ ++ + + H+ V S I D
Sbjct: 1041 QAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 552 SIATVSHDRWIKLWS 566
++ S D+ K+WS
Sbjct: 1099 KFSSTSADKTAKIWS 1113
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 13/277 (4%)
Query: 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA 348
+S C S +A G +KI +P + FS+ GH + + F+ + +SS
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
D ++WN Q H + + + L + SFD T ++W+V TG
Sbjct: 1024 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFT 1082
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
H +V A D + +S D A++W + L+GH V +FS +G L
Sbjct: 1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142
Query: 469 ATGGEDNTCRIWDLRKRKSLYVI---------PAHSNLISQVKFEPQEGYFLVTGSYDMT 519
ATG ++ RIW++ + L+ H ++ V F P + G Y
Sbjct: 1143 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY--- 1199
Query: 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556
+K W+ ++ + + + + PD ++ TV
Sbjct: 1200 LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTV 1236
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 6/174 (3%)
Query: 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSG 381
++ HT+ FS +A+ AD+T +++ + G L + H D + AF
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS--LAASCGLDALARVWD 439
Y+ T S DK ++WD TG + + HS V F + L A+ D ++WD
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR---KRKSLYV 490
L + GH V FSP+ LA+ D T R+WD+R +RKS+ V
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 21/253 (8%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH--VATSSAD 349
C++S D + +AT S VKIW + H+E+ F+ SNH +AT S D
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 350 RTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE----- 403
+LW+ + NT GH + + F P + L + S D T RLWDV + E
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782
Query: 404 ----LLLQEGHSRSVYGI----AFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHVK 454
L E V I ++ DG + + ++D+ T + + GH
Sbjct: 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHS 841
Query: 455 PVLGISFSPNGYHLATGGEDNTC-RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513
+ FSP HLA C +W++ R + H + + V F P FL T
Sbjct: 842 TIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-T 899
Query: 514 GSYDMTVKVWSGR 526
S D T++VW +
Sbjct: 900 ASDDQTIRVWETK 912
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 116/323 (35%), Gaps = 41/323 (12%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH 342
+G + C +S +L + V++W++ K + +GH V FSP +
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 343 VATSSADRTARLWNTDGSLLNT-----------FQ----------------------GHL 369
T+S D+T R+W T N+ FQ G +
Sbjct: 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956
Query: 370 DRL-----ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424
D L + P +Y+ D ++ ++ GH ++V I F DG
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 425 LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484
S D++ +VW+ +TG + L+ H + V + L + D T ++W++
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVIT 1074
Query: 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
+ H + F T S D T K+WS + L GH V
Sbjct: 1075 GRIERDFTCHQGTVLSCAISSDATKFSST-SADKTAKIWSFDLLSPLHELKGHNGCVRCS 1133
Query: 545 DIHPDEQSIATVSHDRWIKLWST 567
D +AT + I++W+
Sbjct: 1134 AFSLDGILLATGDDNGEIRIWNV 1156
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 123/338 (36%), Gaps = 54/338 (15%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSM--------PRLQKFSALKGHTERAT 332
T G ++ C +S D LLA+ S G +++W + +++F
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 333 DVTFSPVS-----NHVATSSADRTARL-WNTDGSLLNTFQGHLDRLARMAFHPSGKYLGT 386
+V S + + ++ ++ +T G L GH + F P
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 387 TSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR--TGR 444
LW++D+ +++ GH V+G+ F PDGS + D RVW+ +
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 445 SILALEGHVKPVL-----------------------------------GISFSPNGYHLA 469
S + L+ + V SP+ ++A
Sbjct: 918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977
Query: 470 TGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK 529
G ED +I +L + H + ++F +G L++ S D ++VW+ +
Sbjct: 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGD 1036
Query: 530 LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567
V L H+ V + D + + + S D +K+W+
Sbjct: 1037 YV-FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1072
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 445 SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE 504
S L + H V FS +G +A+ G D T +++ + L I AH + + F
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 666
Query: 505 PQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDI--HPDEQSIATVSHDRWI 562
+ Y + T S D VK+W KLV + H +V + +AT S+D ++
Sbjct: 667 SDDSY-IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 563 KLWSTRNKGDEHAM 576
KLW K + M
Sbjct: 726 KLWDLNQKECRNTM 739
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 1/175 (0%)
Query: 405 LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPN 464
L+ H+ +VY F DG ASCG D +V+ TG +L ++ H VL +FS +
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV-TGSYDMTVKVW 523
++AT D +IWD K ++ HS ++ F + + L+ TGS D +K+W
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578
+ ++ GH V PD++ +A+ S D ++LW R+ + +++V
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 19/293 (6%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352
+S DG +A+ ++++ +K +K H + FS +++AT SAD+
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 353 RLWNT-DGSLLNTFQGHLDRLARMAFHPSGKY--LGTTSFDKTWRLWDVDTGVELLLQEG 409
++W++ G L++T+ H +++ F + L T S D +LWD++ G
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG---------RSILALEGHVKPVLGI- 459
H+ SV F PD L ASC D R+WD+R+ R L+ E + V I
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIV 808
Query: 460 ---SFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI-PAHSNLISQVKFEPQEGYFLVTGS 515
S+S +G + + N ++D+ L I H + I F P + + V
Sbjct: 809 KCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 866
Query: 516 YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
V++W+ V GH + V + PD S T S D+ I++W T+
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 3/189 (1%)
Query: 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA 427
H D + F G+ + + DKT +++ +TG +LL + H V AF D S A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 428 SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH--LATGGEDNTCRIWDLRKR 485
+C D ++WD TG+ + + H + V F+ H LATG D ++WDL ++
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLD 545
+ + H+N ++ +F P + L + S D T+++W R KS++ ++S D
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 799
Query: 546 IHPDEQSIA 554
D + I
Sbjct: 800 PPEDVEVIV 808
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/315 (22%), Positives = 132/315 (41%), Gaps = 45/315 (14%)
Query: 292 CSYSHDGNLLATSSLSGVV--KIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD 349
CS+S DG+ + ++ + V+ I + L + GH FSP + + +
Sbjct: 811 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQ 868
Query: 350 RTARLWNTDGSL-LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD----------- 397
LWN D L + +GHL + + F P G T S D+T R+W+
Sbjct: 869 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV 928
Query: 398 VDTGVELLLQEGHS--------RSVYGIA-------FHPDGSLAASC-----------GL 431
+ ++++ QE + R + IA + P+ ++ C
Sbjct: 929 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 988
Query: 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491
D ++ +L R + GH K V I F+ +G L + ED+ ++W+ + ++ +
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-L 1047
Query: 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ 551
AH + F + L++ S+D TVKVW+ ++ + + H+ V S I D
Sbjct: 1048 QAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 552 SIATVSHDRWIKLWS 566
++ S D+ K+WS
Sbjct: 1106 KFSSTSADKTAKIWS 1120
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 13/277 (4%)
Query: 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA 348
+S C S +A G +KI +P + FS+ GH + + F+ + +SS
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
D ++WN Q H + + + L + SFD T ++W+V TG
Sbjct: 1031 DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFT 1089
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
H +V A D + +S D A++W + L+GH V +FS +G L
Sbjct: 1090 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1149
Query: 469 ATGGEDNTCRIWDLRKRKSLYVI---------PAHSNLISQVKFEPQEGYFLVTGSYDMT 519
ATG ++ RIW++ + L+ H ++ V F P + G Y
Sbjct: 1150 ATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY--- 1206
Query: 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556
+K W+ ++ + + + + PD ++ TV
Sbjct: 1207 LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTV 1243
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 6/174 (3%)
Query: 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSG 381
++ HT+ FS +A+ AD+T +++ + G L + H D + AF
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS--LAASCGLDALARVWD 439
Y+ T S DK ++WD TG + + HS V F + L A+ D ++WD
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR---KRKSLYV 490
L + GH V FSP+ LA+ D T R+WD+R +RKS+ V
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 105/253 (41%), Gaps = 21/253 (8%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH--VATSSAD 349
C++S D + +AT S VKIW + H+E+ F+ SNH +AT S D
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 350 RTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE----- 403
+LW+ + NT GH + + F P + L + S D T RLWDV + E
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 789
Query: 404 ----LLLQEGHSRSVYGI----AFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHVK 454
L E V I ++ DG + + ++D+ T + + GH
Sbjct: 790 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHS 848
Query: 455 PVLGISFSPNGYHLATGGEDNTC-RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513
+ FSP HLA C +W++ R + H + + V F P FL T
Sbjct: 849 TIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-T 906
Query: 514 GSYDMTVKVWSGR 526
S D T++VW +
Sbjct: 907 ASDDQTIRVWETK 919
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 115/323 (35%), Gaps = 41/323 (12%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH 342
+G + C +S +L + V++W++ K + +GH V FSP +
Sbjct: 844 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 903
Query: 343 VATSSADRTARLWNTDGSLLNT-----------FQ----------------------GHL 369
T+S D+T R+W T N+ FQ G +
Sbjct: 904 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 370 DRLAR-----MAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424
D L P +Y+ D ++ ++ GH ++V I F DG
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 425 LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484
S D++ +VW+ +TG + L+ H + V + L + D T ++W++
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVIT 1081
Query: 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
+ H + F T S D T K+WS + L GH V
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSST-SADKTAKIWSFDLLSPLHELKGHNGCVRCS 1140
Query: 545 DIHPDEQSIATVSHDRWIKLWST 567
D +AT + I++W+
Sbjct: 1141 AFSLDGILLATGDDNGEIRIWNV 1163
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/338 (19%), Positives = 123/338 (36%), Gaps = 54/338 (15%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSM--------PRLQKFSALKGHTERAT 332
T G ++ C +S D LLA+ S G +++W + +++F
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 333 DVTFSPVS-----NHVATSSADRTARL-WNTDGSLLNTFQGHLDRLARMAFHPSGKYLGT 386
+V S + + ++ ++ +T G L GH + F P
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 387 TSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR--TGR 444
LW++D+ +++ GH V+G+ F PDGS + D RVW+ +
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 445 SILALEGHVKPVL-----------------------------------GISFSPNGYHLA 469
S + L+ + V SP+ ++A
Sbjct: 925 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 984
Query: 470 TGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK 529
G ED +I +L + H + ++F +G L++ S D ++VW+ +
Sbjct: 985 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGD 1043
Query: 530 LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567
V L H+ V + D + + + S D +K+W+
Sbjct: 1044 YV-FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1079
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 445 SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE 504
S L + H V FS +G +A+ G D T +++ + L I AH + + F
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 673
Query: 505 PQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDI--HPDEQSIATVSHDRWI 562
+ Y + T S D VK+W KLV + H +V + +AT S+D ++
Sbjct: 674 SDDSY-IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 563 KLWSTRNKGDEHAM 576
KLW K + M
Sbjct: 733 KLWDLNQKECRNTM 746
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 123/293 (41%), Gaps = 19/293 (6%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352
+S DG +A+ ++++ +K +K H + FS +AT S D+
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 353 RLWNT-DGSLLNTFQGHLDRLARMAFHPSGKY--LGTTSFDKTWRLWDVDTGVELLLQEG 409
++WN+ G L++T+ H +++ F S + L T S D +LWD++ G
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 410 HSRSVYGIAFHPDGSLAASCGLDALARVWD---------LRTGRSILALEGHVKP----V 456
H+ SV F PD L ASC D ++WD + + L LE + V
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIV 807
Query: 457 LGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI-PAHSNLISQVKFEPQEGYFLVTGS 515
S+S +G + + N ++D+ L I H + I F PQ + V
Sbjct: 808 KCCSWSADGARIMVAAK-NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQ-NHLAVVAL 865
Query: 516 YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
V++W+ V GH + V + PD S T S D+ I+LW T+
Sbjct: 866 SQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Query: 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI 459
T + L+ H+ +VY F DG ASCG D +V+ TG +L ++ H VL
Sbjct: 610 TNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCC 669
Query: 460 SFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV-TGSYDM 518
+FS + +AT D +IW+ + ++ HS ++ F + L+ TGS D
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 519 TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578
+K+W + ++ GH V PD++ +A+ S D +KLW + + +++V
Sbjct: 730 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV 789
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA 427
H D + F G+ + + DKT +++ +TG +LL + H V AF D A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 428 SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH--LATGGEDNTCRIWDLRKR 485
+C +D ++W+ TG + + H + V F+ + +H LATG D ++WDL ++
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ + H+N ++ +F P + L + S D T+K+W
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLW 776
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 124/295 (42%), Gaps = 23/295 (7%)
Query: 292 CSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH--VATSSAD 349
C++S D +AT S+ VKIW+ + H+E+ F+ S+H +AT S+D
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 350 RTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE----- 403
+LW+ + NT GH + + F P K L + S D T +LWD + E
Sbjct: 729 CFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSIN 788
Query: 404 ---LLL-----QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHVK 454
L QE V ++ DG+ + + ++D+ T + + GH
Sbjct: 789 VKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGHHS 847
Query: 455 PVLGISFSPNGYHLATGGEDNTC-RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513
+ FSP HLA C +W+ R + H + + V F P FL T
Sbjct: 848 TIQYCDFSPQN-HLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL-T 905
Query: 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
S D T+++W + K+ K+ + + + +E + V H R ++L + R
Sbjct: 906 SSDDQTIRLWETK--KVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGR 958
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 12/276 (4%)
Query: 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA 348
+S C S +A +G ++I + + F + H + + F+ + +SS
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
D ++WN +GH + + + + L + SFD T ++W++ TG +
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFV 1088
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
H +V D + +S D A++W + L GH V +FS + L
Sbjct: 1089 CHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 469 ATGGEDNTCRIWDLRKRKSLYVI--------PAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
ATG ++ RIW++ + L++ H ++ + F P + G Y +
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGY---I 1205
Query: 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556
K W+ + ++ + + + + PD ++ TV
Sbjct: 1206 KWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTV 1241
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 110/325 (33%), Gaps = 41/325 (12%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH 342
+G + C +S +L + V++W+ K + +GH V FSP +
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 343 VATSSADRTARLWNTDG---------------------------------SLLNTFQGHL 369
TSS D+T RLW T L+N G +
Sbjct: 903 FLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQI 962
Query: 370 DRLAR-----MAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424
D L P +Y+ + + ++ + H ++V+ I F D
Sbjct: 963 DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEK 1022
Query: 425 LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484
S DA +VW+ + + I L GH + V N L + D T ++W++
Sbjct: 1023 TLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNS-RLLSWSFDGTVKVWNIIT 1080
Query: 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
H + F T S D T K+WS + L GH V
Sbjct: 1081 GNKEKDFVCHQGTVLSCDISHDATKFSST-SADKTAKIWSFDLLLPLHELRGHNGCVRCS 1139
Query: 545 DIHPDEQSIATVSHDRWIKLWSTRN 569
D +AT + I++W+ N
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVSN 1164
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 361 LLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKT---WRLW--DVDTGVELLLQEGHSR 412
L T +GH + LA A P+ L + S DKT W+L D GV + +GHS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472
V DG+ A S D R+WD+ TG + GH V+ + + +G
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-----GYFLVTGSYDMTVKVWSGRD 527
D T ++W + K + L + H++ +SQV+ P E +++ D VK W+
Sbjct: 127 RDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
F++ GH + + +L PD IA+ D I LW+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 23/257 (8%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV 343
G + C+ + DG ++S +++W + + + GH V ++ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY---------LGTTSFDKTWR 394
+ S D+T ++W G L T GH D ++++ P+ K G K W
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK 454
L + + GH+ ++ + PDG+L AS G D +W+L +++ L
Sbjct: 183 LNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 455 PVLGISFSPNGYHLATGGE--------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
V ++FSPN Y LA D + DLR + Y A + +S
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA--WSA 296
Query: 507 EGYFLVTGSYDMTVKVW 523
+G L G D ++VW
Sbjct: 297 DGQTLFAGYTDNVIRVW 313
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 299 NLLATSSLSGVVKIWSMP-RLQKFS----ALKGHTERATDVTFSPVSNHVATSSADRTAR 353
NLL ++S + W + QKF + KGH+ D T + + ++S D+T R
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 354 LWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412
LW+ G F GH + + + + S DKT ++W + G L GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
Query: 413 SVYGIAFHP------DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466
V + P D S G D + + W+L + GH + ++ SP+G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
+A+ G+D +W+L +K++Y + A + S + F P Y+L + +KV+S
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNR-YWLAAATA-TGIKVFSLD 266
Query: 527 DFKLVKSL----SGH----EAKVTSLDIHPDEQSIATVSHDRWIKLW 565
LV L +G+ E SL D Q++ D I++W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 16/247 (6%)
Query: 324 LKGHTERATDV-TFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHLDRLARMA 376
L+GH T + T + N + ++S D+T W G + +F+GH +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
G Y + S+DKT RLWDV TG GH V + S+ S D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPN------GYHLATGGEDNTCRIWDLRKRKSLYV 490
VW ++ G+ + L GH V + PN + + G D + W+L + +
Sbjct: 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
H++ I+ + P +G + + D + +W+ K + +LS + +V SL P+
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNR 249
Query: 551 QSIATVS 557
+A +
Sbjct: 250 YWLAAAT 256
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 361 LLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKT---WRLW--DVDTGVELLLQEGHSR 412
L T +GH + LA A P+ L + S DKT W+L D GV + +GHS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472
V DG+ A S D R+WD+ TG + GH V+ + + +G
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-----GYFLVTGSYDMTVKVWSGRD 527
D T ++W + K + L + H++ +SQV+ P E +++ D VK W+
Sbjct: 127 RDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
F++ GH + + +L PD IA+ D I LW+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 23/257 (8%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV 343
G + C+ + DG ++S +++W + + + GH V ++ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY---------LGTTSFDKTWR 394
+ S D+T ++W G L T GH D ++++ P+ K G K W
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK 454
L + + GH+ ++ + PDG+L AS G D +W+L +++ L
Sbjct: 183 LNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 455 PVLGISFSPNGYHLATGGE--------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
V ++FSPN Y LA D + DLR + Y A + +S
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLA--WSA 296
Query: 507 EGYFLVTGSYDMTVKVW 523
+G L G D ++VW
Sbjct: 297 DGQTLFAGYTDNVIRVW 313
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 24/287 (8%)
Query: 299 NLLATSSLSGVVKIWSMP-RLQKFS----ALKGHTERATDVTFSPVSNHVATSSADRTAR 353
NLL ++S + W + QKF + KGH+ D T + + ++S D+T R
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 354 LWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412
LW+ G F GH + + + + S DKT ++W + G L GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
Query: 413 SVYGIAFHP------DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466
V + P D S G D + + W+L + GH + ++ SP+G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
+A+ G+D +W+L +K++Y + A + S + F P Y+L + +KV+S
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNR-YWLAAATA-TGIKVFSLD 266
Query: 527 DFKLVKSL--------SGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
LV L + E SL D Q++ D I++W
Sbjct: 267 PQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 16/247 (6%)
Query: 324 LKGHTERATDV-TFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHLDRLARMA 376
L+GH T + T + N + ++S D+T W G + +F+GH +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
G Y + S+DKT RLWDV TG GH V + S+ S D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPN------GYHLATGGEDNTCRIWDLRKRKSLYV 490
VW ++ G+ + L GH V + PN + + G D + W+L + +
Sbjct: 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
H++ I+ + P +G + + D + +W+ K + +LS + +V SL P+
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNR 249
Query: 551 QSIATVS 557
+A +
Sbjct: 250 YWLAAAT 256
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 361 LLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKT---WRLW--DVDTGVELLLQEGHSR 412
L T +GH + LA A P+ L + S DKT W+L D GV + +GHS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472
V DG+ A S D R+WD+ TG + GH V+ + + +G
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-----GYFLVTGSYDMTVKVWSGRD 527
D T ++W + K + L + H++ +SQV+ P E +++ D VK W+
Sbjct: 127 RDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
F++ GH + + +L PD IA+ D I LW+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 23/257 (8%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV 343
G + C+ + DG ++S +++W + + + GH V ++ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY---------LGTTSFDKTWR 394
+ S D+T ++W G L T GH D ++++ P+ K G K W
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK 454
L + + GH+ ++ + PDG+L AS G D +W+L +++ L
Sbjct: 183 LNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 455 PVLGISFSPNGYHLATGGE--------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
V ++FSPN Y LA D + DLR + Y A + +S
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA--WSA 296
Query: 507 EGYFLVTGSYDMTVKVW 523
+G L G D ++VW
Sbjct: 297 DGQTLFAGYTDNVIRVW 313
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 299 NLLATSSLSGVVKIWSMP-RLQKFS----ALKGHTERATDVTFSPVSNHVATSSADRTAR 353
NLL ++S + W + QKF + KGH+ D T + + ++S D+T R
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 354 LWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412
LW+ G F GH + + + + S DKT ++W + G L GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
Query: 413 SVYGIAFHP------DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466
V + P D S G D + + W+L + GH + ++ SP+G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
+A+ G+D +W+L +K++Y + A + S + F P Y+L + +KV+S
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNR-YWLAAATA-TGIKVFSLD 266
Query: 527 DFKLVKSL----SGH----EAKVTSLDIHPDEQSIATVSHDRWIKLW 565
LV L +G+ E SL D Q++ D I++W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 16/247 (6%)
Query: 324 LKGHTERATDV-TFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHLDRLARMA 376
L+GH T + T + N + ++S D+T W G + +F+GH +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
G Y + S+DKT RLWDV TG GH V + S+ S D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPN------GYHLATGGEDNTCRIWDLRKRKSLYV 490
VW ++ G+ + L GH V + PN + + G D + W+L + +
Sbjct: 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
H++ I+ + P +G + + D + +W+ K + +LS + +V SL P+
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNR 249
Query: 551 QSIATVS 557
+A +
Sbjct: 250 YWLAAAT 256
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 361 LLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKT---WRLW--DVDTGVELLLQEGHSR 412
L T +GH + LA A P+ L + S DKT W+L D GV + +GHS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472
V DG+ A S D R+WD+ TG + GH V+ + + +G
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-----GYFLVTGSYDMTVKVWSGRD 527
D T ++W + K + L + H++ +SQV+ P E +++ D VK W+
Sbjct: 127 RDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
F++ GH + + +L PD IA+ D I LW+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 23/257 (8%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV 343
G + C+ + DG ++S +++W + + + GH V ++ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY---------LGTTSFDKTWR 394
+ S D+T ++W G L T GH D ++++ P+ K G K W
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Query: 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK 454
L + + GH+ ++ + PDG+L AS G D +W+L +++ L
Sbjct: 183 LNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238
Query: 455 PVLGISFSPNGYHLATGGE--------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
V ++FSPN Y LA D + DLR + Y A + +S
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA--WSA 296
Query: 507 EGYFLVTGSYDMTVKVW 523
+G L G D ++VW
Sbjct: 297 DGQTLFAGYTDNVIRVW 313
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 299 NLLATSSLSGVVKIWSMP-RLQKFS----ALKGHTERATDVTFSPVSNHVATSSADRTAR 353
NLL ++S + W + QKF + KGH+ D T + + ++S D+T R
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 354 LWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412
LW+ G F GH + + + + S DKT ++W + G L GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 413 SVYGIAFHP------DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466
V + P D S G D + + W+L + GH + ++ SP+G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
+A+ G+D +W+L +K++Y + A + S + F P Y+L + +KV+S
Sbjct: 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNR-YWLAAATA-TGIKVFSLD 266
Query: 527 DFKLVKSL----SGH----EAKVTSLDIHPDEQSIATVSHDRWIKLW 565
LV L +G+ E SL D Q++ D I++W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 16/247 (6%)
Query: 324 LKGHTERATDV-TFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHLDRLARMA 376
L+GH T + T + N + ++S D+T W G + +F+GH +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
G Y + S+DKT RLWDV TG GH V + S+ S D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPN------GYHLATGGEDNTCRIWDLRKRKSLYV 490
VW ++ G+ + L GH V + PN + + G D + W+L + +
Sbjct: 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
H++ I+ + P +G + + D + +W+ K + +LS + +V SL P+
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNR 249
Query: 551 QSIATVS 557
+A +
Sbjct: 250 YWLAAAT 256
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 361 LLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKT---WRLW--DVDTGVELLLQEGHSR 412
L T +GH + LA A P+ L + S DKT W+L D GV + +GHS
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472
V DG+ A S D R+WD+ TG + GH V+ + + +G
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-----GYFLVTGSYDMTVKVWSGRD 527
D T ++W + K + L + H++ +SQV+ P E +++ D VK W+
Sbjct: 121 RDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
F++ GH + + +L PD IA+ D I LW+ K
Sbjct: 180 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 23/257 (8%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV 343
G + C+ + DG ++S +++W + + + GH V ++ +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY---------LGTTSFDKTWR 394
+ S D+T ++W G L T GH D ++++ P+ K G K W
Sbjct: 117 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK 454
L + + GH+ ++ + PDG+L AS G D +W+L +++ L
Sbjct: 177 LNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 232
Query: 455 PVLGISFSPNGYHLATGGE--------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
V ++FSPN Y LA D + DLR + Y A + +S
Sbjct: 233 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA--WSA 290
Query: 507 EGYFLVTGSYDMTVKVW 523
+G L G D ++VW
Sbjct: 291 DGQTLFAGYTDNVIRVW 307
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 299 NLLATSSLSGVVKIWSMP-RLQKFS----ALKGHTERATDVTFSPVSNHVATSSADRTAR 353
NLL ++S + W + QKF + KGH+ D T + + ++S D+T R
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 354 LWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412
LW+ G F GH + + + + S DKT ++W + G L GH+
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 143
Query: 413 SVYGIAFHP------DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466
V + P D S G D + + W+L + GH + ++ SP+G
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
+A+ G+D +W+L +K++Y + A + S + F P Y+L + +KV+S
Sbjct: 204 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNR-YWLAAATA-TGIKVFSLD 260
Query: 527 DFKLVKSL----SGH----EAKVTSLDIHPDEQSIATVSHDRWIKLW 565
LV L +G+ E SL D Q++ D I++W
Sbjct: 261 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 104/247 (42%), Gaps = 16/247 (6%)
Query: 324 LKGHTERATDV-TFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHLDRLARMA 376
L+GH T + T + N + ++S D+T W G + +F+GH +
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
G Y + S+DKT RLWDV TG GH V + S+ S D +
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPN------GYHLATGGEDNTCRIWDLRKRKSLYV 490
VW ++ G+ + L GH V + PN + + G D + W+L + +
Sbjct: 127 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
H++ I+ + P +G + + D + +W+ K + +LS + +V SL P+
Sbjct: 186 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNR 243
Query: 551 QSIATVS 557
+A +
Sbjct: 244 YWLAAAT 250
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 16/223 (7%)
Query: 361 LLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKT---WRLW--DVDTGVELLLQEGHSR 412
L T +GH + LA A P+ L + S DKT W+L D GV + +GHS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472
V DG+ A S D R+WD+ TG + GH V + + +G
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS 126
Query: 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-----GYFLVTGSYDMTVKVWSGRD 527
D T ++W + K + L + H++ +SQV+ P E +++ D VK W+
Sbjct: 127 RDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
F++ GH + + +L PD IA+ D I LW+ K
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 102/257 (39%), Gaps = 23/257 (8%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV 343
G + C+ + DG ++S +++W + + + GH V ++ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY---------LGTTSFDKTWR 394
+ S D+T ++W G L T GH D ++++ P+ K G K W
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK 454
L + + GH+ ++ + PDG+L AS G D +W+L ++ L
Sbjct: 183 LNQFQIEADFI---GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-D 238
Query: 455 PVLGISFSPNGYHLATGGE--------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
V ++FSPN Y LA D + DLR + Y A + +S
Sbjct: 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA--WSA 296
Query: 507 EGYFLVTGSYDMTVKVW 523
+G L G D ++VW
Sbjct: 297 DGQTLFAGYTDNVIRVW 313
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 24/287 (8%)
Query: 299 NLLATSSLSGVVKIWSMP-RLQKFS----ALKGHTERATDVTFSPVSNHVATSSADRTAR 353
NLL ++S + W + QKF + KGH+ D T + + ++S D+T R
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 354 LWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412
LW+ G F GH + + + + S DKT ++W + G L GH+
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 413 SVYGIAFHP------DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466
V + P D S G D + W+L + GH + ++ SP+G
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526
+A+ G+D +W+L +K+ Y + A + S + F P Y+L + +KV+S
Sbjct: 210 LIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LAFSPNR-YWLAAATA-TGIKVFSLD 266
Query: 527 DFKLVKSL----SGH----EAKVTSLDIHPDEQSIATVSHDRWIKLW 565
LV L +G+ E SL D Q++ D I++W
Sbjct: 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 16/247 (6%)
Query: 324 LKGHTERATDV-TFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHLDRLARMA 376
L+GH T + T + N + ++S D+T W G + +F+GH +
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
G Y + S+DKT RLWDV TG GH V + S S D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPN------GYHLATGGEDNTCRIWDLRKRKSLYV 490
VW ++ G+ + L GH V + PN + + G D + W+L + +
Sbjct: 133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550
H++ I+ + P +G + + D + +W+ K +LS + +V SL P+
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNR 249
Query: 551 QSIATVS 557
+A +
Sbjct: 250 YWLAAAT 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 7/252 (2%)
Query: 303 TSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSL 361
T+ SG V+IW+ + +++ F N + S D R++N + G
Sbjct: 30 TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89
Query: 362 LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFH 420
+ F+ H D + +A HP+ Y+ + S D T +LW+ + L EGH V +AF+
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 421 P-DGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSP--NGYHLATGGEDNT 476
P D S AS LD +VW L L G + V + + P + ++ T +D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 477 CRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536
+IWD + + + + H + +S F P +++GS D T+K+W+ +K+ K+L+
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 537 HEAKVTSLDIHP 548
+ + HP
Sbjct: 269 GLERSWCIATHP 280
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
TF DR+ + FHP+ ++ TT + +W+ +T VE+ + V F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483
+ D RV++ TG ++ E H + I+ P ++ +G +D T ++W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 484 KRKSL-YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS-GRDFKLVKSLSGHEAKV 541
+L H + + V F P++ +G D TVKVWS G+ +G E V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 542 TSLDIH--PDEQSIATVSHDRWIKLWSTRNK 570
+D + PD+ + T S D IK+W + K
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 114/260 (43%), Gaps = 5/260 (1%)
Query: 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL-LNTFQGHLDRLARMAFHPSGK 382
++R + F P V T+ +WN + + + + Q + F
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 383 YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442
++ S D R+++ +TG +++ E H + IA HP S D ++W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 443 GRSI-LALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDL-RKRKSLYVIPAHSNLIS 499
++ EGH V+ ++F+P + A+G D T ++W L + + + ++
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 500 QVKFEP-QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558
V + P + +++T S D+T+K+W + V +L GH + V+ HP I + S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 559 DRWIKLWSTRNKGDEHAMDV 578
D +K+W++ E ++V
Sbjct: 249 DGTLKIWNSSTYKVEKTLNV 268
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 283 SGDDRPLSGCSYSH--DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
+G +R ++ Y D + T+S +KIW + L+GH + F P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 341 NHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGK 382
+ + S D T ++WN+ + T L+R +A HP+G+
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 7/254 (2%)
Query: 301 LATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-G 359
+ T+ SG V++W+ + +++ F N + S D R++N + G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIA 418
+ F+ H D + +A HP+ Y+ + S D T +LW+ + L EGH V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 419 FHP-DGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSP--NGYHLATGGED 474
F+P D S AS LD +VW L L G + V + + P + ++ T +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534
T +IWD + + + + H + +S F P +++GS D T+K+W+ +K+ K+L
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 535 SGHEAKVTSLDIHP 548
+ + + HP
Sbjct: 267 NVGLERSWCIATHP 280
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
TF DR+ + FHP+ ++ TT + LW+ +T VE+ + V F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483
+ D RV++ TG ++ E H + I+ P ++ +G +D T ++W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 484 KRKSL-YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS-GRDFKLVKSLSGHEAKV 541
+L H + + V F P++ +G D TVKVWS G+ +G E V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 542 TSLDIH--PDEQSIATVSHDRWIKLWSTRNK 570
+D + PD+ + T S D IK+W + K
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 114/261 (43%), Gaps = 5/261 (1%)
Query: 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL-LNTFQGHLDRLARMAFHPSG 381
++R + F P V T+ LWN + + + + Q + F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441
++ S D R+++ +TG +++ E H + IA HP S D ++W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 442 TGRSI-LALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDL-RKRKSLYVIPAHSNLI 498
++ EGH V+ ++F+P + A+G D T ++W L + + + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 499 SQVKFEP-QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557
+ V + P + +++T S D+T+K+W + V +L GH + V+ HP I + S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 558 HDRWIKLWSTRNKGDEHAMDV 578
D +K+W++ E ++V
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNV 268
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 283 SGDDRPLSGCSYSH--DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
+G +R ++ Y D + T+S +KIW + L+GH + F P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 341 NHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGK 382
+ + S D T ++WN+ + T L+R +A HP+G+
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 7/254 (2%)
Query: 301 LATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-G 359
+ T+ SG V++W+ + +++ F N + S D R++N + G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIA 418
+ F+ H D + +A HP+ Y+ + S D T +LW+ + L EGH V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 419 FHP-DGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSP--NGYHLATGGED 474
F+P D S AS LD +VW L L G + V + + P + ++ T +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534
T +IWD + + + + H + +S F P +++GS D T+K+W+ +K+ K+L
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 535 SGHEAKVTSLDIHP 548
+ + + HP
Sbjct: 267 NVGLERSWCIATHP 280
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
TF DR+ + FHP+ ++ TT + LW+ +T VE+ + V F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483
+ D RV++ TG ++ E H + I+ P ++ +G +D T ++W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 484 KRKSL-YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS-GRDFKLVKSLSGHEAKV 541
+L H + + V F P++ +G D TVKVWS G+ +G E V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 542 TSLDIH--PDEQSIATVSHDRWIKLWSTRNK 570
+D + PD+ + T S D IK+W + K
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 114/261 (43%), Gaps = 5/261 (1%)
Query: 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL-LNTFQGHLDRLARMAFHPSG 381
++R + F P V T+ LWN + + + + Q + F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441
++ S D R+++ +TG +++ E H + IA HP S D ++W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 442 TGRSI-LALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDL-RKRKSLYVIPAHSNLI 498
++ EGH V+ ++F+P + A+G D T ++W L + + + +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 499 SQVKFEP-QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557
+ V + P + +++T S D+T+K+W + V +L GH + V+ HP I + S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 558 HDRWIKLWSTRNKGDEHAMDV 578
D +K+W++ E ++V
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNV 268
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 283 SGDDRPLSGCSYSH--DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
+G +R ++ Y D + T+S +KIW + L+GH + F P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 341 NHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGK 382
+ + S D T ++WN+ + T L+R +A HP+G+
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 7/254 (2%)
Query: 301 LATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-G 359
+ T+ SG V++W+ + +++ F N + S D R++N + G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIA 418
+ F+ H D + +A HP+ Y+ + S D T +LW+ + L EGH V +A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 419 FHP-DGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSP--NGYHLATGGED 474
F+P D S AS LD +VW L L G + V + + P + ++ T +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534
T +IWD + + + + H + +S F P +++GS D T+K+W+ +K+ K+L
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 535 SGHEAKVTSLDIHP 548
+ + + HP
Sbjct: 267 NVGLERSWCIATHP 280
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
TF DR+ + FHP+ ++ TT + LW+ +T VE+ + V F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK 67
Query: 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483
+ D RV++ TG ++ E H + I+ P ++ +G +D T ++W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 484 KRKSL-YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS-GRDFKLVKSLSGHEAKV 541
+L H + + V F P++ +G D TVKVWS G+ +G E V
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 542 TSLDIH--PDEQSIATVSHDRWIKLWSTRNK 570
+D + PD+ + T S D IK+W + K
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 5/260 (1%)
Query: 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL-LNTFQGHLDRLARMAFHPSGK 382
++R + F P V T+ LWN + + + + Q + F
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN 68
Query: 383 YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442
++ S D R+++ +TG +++ E H + IA HP S D ++W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 443 GRSI-LALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDL-RKRKSLYVIPAHSNLIS 499
++ EGH V+ ++F+P + A+G D T ++W L + + + ++
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 500 QVKFEP-QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558
V + P + +++T S D+T+K+W + V +L GH + V+ HP I + S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 559 DRWIKLWSTRNKGDEHAMDV 578
D +K+W++ E ++V
Sbjct: 249 DGTLKIWNSSTYKVEKTLNV 268
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 283 SGDDRPLSGCSYSH--DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
+G +R ++ Y D + T+S +KIW + L+GH + F P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 341 NHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGK 382
+ + S D T ++WN+ + T L+R +A HP+G+
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 18/192 (9%)
Query: 376 AFHPSGKYLGTTSFDKTWRL----WDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL 431
+F S L T S D+ +L +D T +++L + H +++ +A+ P SL A+
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 432 DALARVW------DLRTGRSILAL-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484
D+ +W D +LA+ EGH V G+++S +GY+LAT D + IW+ +
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 485 RKSLY----VIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR--DFKLVKSLSGHE 538
Y V+ HS + V + P E L + SYD TV++W D++ V L+GHE
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHE 197
Query: 539 AKVTSLDIHPDE 550
V S D E
Sbjct: 198 GTVWSSDFDKTE 209
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 58/306 (18%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL-----KGHTERATDVTFSPVSNHVATSS 347
S+ +LAT S +K+ S+ + F+ + H + V + P ++ +A S
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSV-KYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77
Query: 348 ADRTARLWNTDGS--------LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399
D T +W + S LL +GH + + +A+ G YL T S DK+ +W+ D
Sbjct: 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 400 -TGVEL----LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW-DLRTGRSILA-LEGH 452
+G E +LQE HS+ V + +HP +L AS D R+W D +A L GH
Sbjct: 138 ESGEEYECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH 196
Query: 453 VKPVLGISF--SPNGYHLATGGEDNTCRIW--------------------DLRKRKSLYV 490
V F + + L +G +D+T R+W D+ KR+ V
Sbjct: 197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256
Query: 491 IPAHSNLISQVK-------FEPQEGYF-------LVTGSYDMTVKVWSGRDFKLVKSLSG 536
+ LI+ V +E +G + L G Y++ V W + K + + G
Sbjct: 257 AWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316
Query: 537 HEAKVT 542
+ V
Sbjct: 317 DDGIVN 322
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 25/225 (11%)
Query: 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIW----SMPRLQKFSALKGHTERATDVTFSPV 339
G + + G ++S+DG LAT S V IW S + S L+ H++ V + P
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 340 SNHVATSSADRTARLW---NTDGSLLNTFQGHLDRLARMAFHPS-GKY-LGTTSFDKTWR 394
+A+SS D T R+W + D + GH + F + G + L + S D T R
Sbjct: 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224
Query: 395 LWDV---------DTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR- 444
+W + E +L + H R VY +A+ +G L AS G D + V++ G
Sbjct: 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW 283
Query: 445 SILALEGHVKPVLGIS----FSPNGYH-LATGGEDNTCRIWDLRK 484
+ A V I+ NG LATGG+D W L K
Sbjct: 284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG-----RDFK--LVKSLSGHEAKVTSLD 545
AH I V + P L GS+D TV +W+ R F+ L+ + GHE +V +
Sbjct: 56 AHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 546 IHPDEQSIATVSHDRWIKLWSTRNKGDEH 574
D +AT S D+ + +W T G+E+
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEY 143
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 21/205 (10%)
Query: 384 LGTTSFDKT---WRLWDVDT----GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
L + S DKT W+L++ + G+ GH+ V +A + A S D R
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL--RKRKSLYVIPAH 494
+WDLRTG + GH V ++FSP+ + + G + ++W++ + S H
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 495 SNLISQVKF----------EPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
S+ +S V++ +P YF G +D +KVW+ +F++ + HE+ V L
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVG-WDGRLKVWN-TNFQIRYTFKAHESNVNHL 219
Query: 545 DIHPDEQSIATVSHDRWIKLWSTRN 569
I P+ + IAT D+ + +W N
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILN 244
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH 342
+G + +S + S + +SS +++W + + GH V FSP +
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 343 VATSSADRTARLWNTDGSLLNTF---QGHLDRLARMAFHPSGK----------YLGTTSF 389
+ ++ A+R +LWN G + + H D ++ + + P K Y + +
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 390 DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440
D ++W+ + + + H +V ++ P+G A+ G D +WD+
Sbjct: 193 DGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 24/228 (10%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GH+ + Y+ T + DK R++D LL GH V+ + + G
Sbjct: 116 TLRGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPV--LGISFSPNGYHLATGGEDNTCRIWD 481
+ S D RVWD++ G EGH V L I N ++ TG DNT +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 482 LRKRKSL--------------------YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVK 521
L K S+ Y + ++ V+ G +V+GSYD T+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 522 VWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
VW K + LSGH ++ S + + + S D I++W N
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 116/261 (44%), Gaps = 34/261 (13%)
Query: 309 VVKIWSMPRLQ-KFSALKGH-TERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365
++K W P+ + + L+GH T T + F N+V T + D+ R++++ + L
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQL 158
Query: 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSV--YGIAFHPDG 423
GH + + + G L + S D+T R+WD+ G + EGH+ +V I + +
Sbjct: 159 SGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 424 SLAASCGLDALARVWDLRTGRSIL-----------------------ALEGHVKPVLGIS 460
+ D VW L S+ L GH+ V +S
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
+G + +G DNT +WD+ + K LY++ H++ I ++ E ++ S D T+
Sbjct: 278 --GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTI 334
Query: 521 KVWSGRDFKLVKSLSGHEAKV 541
++W + +L+ +L GH A V
Sbjct: 335 RIWDLENGELMYTLQGHTALV 355
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 111/279 (39%), Gaps = 38/279 (13%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGH--TERATDVTFSPVS 340
SG D + Y+H G +L + S V++W + + +GH T R D+
Sbjct: 159 SGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 341 NHVATSSADRTARLWNT------------------------DGSLLNTFQGHLDRLARMA 376
++ T S D T +W + + +GH+ + ++
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
H G + + S+D T +WDV L + GH+ +Y + + S +D R
Sbjct: 278 GH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR--KRKSLYVIPAH 494
+WDL G + L+GH V + S L + D + R WD RK Y H
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFSY---HH 390
Query: 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS 533
+NL + F + LV+GS + +++ R KLV +
Sbjct: 391 TNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHA 427
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 128/311 (41%), Gaps = 65/311 (20%)
Query: 275 SLYLDCTESGD-------DRP---LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL 324
S+YL SGD ++P +S ++ +GN LA + S V++W + + ++ +
Sbjct: 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
Query: 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL 384
H+ R +++ N SS R+ + + D R+A H ++
Sbjct: 186 TSHSARVGSLSW----NSYILSSGSRSGHIHHHD--------------VRVAEH----HV 223
Query: 385 GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG- 443
T S GHS+ V G+ + PDG AS G D L VW G
Sbjct: 224 ATLS--------------------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Query: 444 ------RSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHS 495
++ +G VK V + N LATGG D RIW++ L + AHS
Sbjct: 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNV--LATGGGTSDRHIRIWNVCSGACLSAVDAHS 321
Query: 496 NLISQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554
+ S + + P + + + +W V L GH ++V SL + PD ++A
Sbjct: 322 QVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 555 TVSHDRWIKLW 565
+ + D ++LW
Sbjct: 381 SAAADETLRLW 391
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT---DGSL--LNTFQGHLDRLARM 375
+ L GH++ + ++P H+A+ D +W + +G L TF H + +
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 376 AFHPSGKYL---GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD-GSLAASCGL 431
A+ P + G + D+ R+W+V +G L + HS+ V I + P L + G
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGF 341
Query: 432 -DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL------RK 484
+W T + L+GH VL ++ SP+G +A+ D T R+W R+
Sbjct: 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401
Query: 485 RKSLYVIPAHSNLISQ 500
R+ A S+LI Q
Sbjct: 402 REREKASAAKSSLIHQ 417
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 128/311 (41%), Gaps = 65/311 (20%)
Query: 275 SLYLDCTESGD-------DRP---LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL 324
S+YL SGD ++P +S ++ +GN LA + S V++W + + ++ +
Sbjct: 137 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
Query: 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL 384
H+ R +++ N SS R+ + + D R+A H ++
Sbjct: 197 TSHSARVGSLSW----NSYILSSGSRSGHIHHHD--------------VRVAEH----HV 234
Query: 385 GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG- 443
T S GHS+ V G+ + PDG AS G D L VW G
Sbjct: 235 ATLS--------------------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274
Query: 444 ------RSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHS 495
++ +G VK V + N LATGG D RIW++ L + AHS
Sbjct: 275 GGWVPLQTFTQHQGAVKAVAWCPWQSNV--LATGGGTSDRHIRIWNVCSGACLSAVDAHS 332
Query: 496 NLISQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554
+ S + + P + + + +W V L GH ++V SL + PD ++A
Sbjct: 333 QVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 555 TVSHDRWIKLW 565
+ + D ++LW
Sbjct: 392 SAAADETLRLW 402
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT---DGSL--LNTFQGHLDRLARM 375
+ L GH++ + ++P H+A+ D +W + +G L TF H + +
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 376 AFHPSGKYL---GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD-GSLAASCGL 431
A+ P + G + D+ R+W+V +G L + HS+ V I + P L + G
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGF 352
Query: 432 -DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL------RK 484
+W T + L+GH VL ++ SP+G +A+ D T R+W R+
Sbjct: 353 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 412
Query: 485 RKSLYVIPAHSNLISQ 500
R+ A S+LI Q
Sbjct: 413 REREKASAAKSSLIHQ 428
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 24/228 (10%)
Query: 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423
T +GH + Y+ T + DK R++D LL GH V+ + + G
Sbjct: 116 TLRGHXTSVI-TCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPV--LGISFSPNGYHLATGGEDNTCRIWD 481
+ S D RVWD++ G EGH V L I N ++ TG DNT +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 482 LRKRKSL--------------------YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVK 521
L K S+ Y + + V+ G +V+GSYD T+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 522 VWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569
VW K + LSGH ++ S + + + S D I++W N
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 34/261 (13%)
Query: 309 VVKIWSMPRL-QKFSALKGH-TERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365
++K W P+ + + L+GH T T + F N+V T + D+ R++++ + L
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHXTSVITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQL 158
Query: 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSV--YGIAFHPDG 423
GH + + + G L + S D+T R+WD+ G + EGH+ +V I + +
Sbjct: 159 SGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 424 SLAASCGLDALARVWDLRTGRSIL-----------------------ALEGHVKPVLGIS 460
+ D VW L S+ L GH V +
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV- 276
Query: 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520
S +G + +G DNT +WD+ + K LY++ H++ I ++ E ++ S D T+
Sbjct: 277 -SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYD-HERKRCISASXDTTI 334
Query: 521 KVWSGRDFKLVKSLSGHEAKV 541
++W + +L +L GH A V
Sbjct: 335 RIWDLENGELXYTLQGHTALV 355
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 38/279 (13%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGH--TERATDVTFSPVS 340
SG D + Y+H G +L + S V++W + + +GH T R D+
Sbjct: 159 SGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 341 NHVATSSADRTARLWNT------------------------DGSLLNTFQGHLDRLARMA 376
++ T S D T +W + + +GH + ++
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436
H G + + S+D T +WDV L + GH+ +Y + + S D R
Sbjct: 278 GH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR--KRKSLYVIPAH 494
+WDL G L+GH V + S L + D + R WD RK Y H
Sbjct: 336 IWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFSY---HH 390
Query: 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS 533
+NL + F + LV+GS + +++ R KLV +
Sbjct: 391 TNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHA 427
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554
+++I+ ++FE +++TG+ D ++V+ + K + LSGH+ V +L + +
Sbjct: 122 TSVITCLQFEDN---YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YAHGGILV 177
Query: 555 TVSHDRWIKLWSTRNKGDEHAMD 577
+ S DR +++W + H +
Sbjct: 178 SGSTDRTVRVWDIKKGCCTHVFE 200
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 65/312 (20%)
Query: 274 ESLYLDCTESGD-------DRP---LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA 323
S+YL SGD ++P +S ++ +GN LA + S V++W + + ++
Sbjct: 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104
Query: 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY 383
+ H+ R +++ N SS R+ + + D R+A H +
Sbjct: 105 MTSHSARVGSLSW----NSYILSSGSRSGHIHHHD--------------VRVAEH----H 142
Query: 384 LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443
+ T S GHS+ V G+ + PDG AS G D L VW G
Sbjct: 143 VATLS--------------------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 444 -------RSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAH 494
++ +G VK V + N LATGG D RIW++ L + AH
Sbjct: 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNV--LATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 495 SNLISQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSI 553
S + S + + P + + + +W V L GH ++V SL + PD ++
Sbjct: 241 SQVCS-ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299
Query: 554 ATVSHDRWIKLW 565
A+ + D ++LW
Sbjct: 300 ASAAADETLRLW 311
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 111/262 (42%), Gaps = 17/262 (6%)
Query: 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN 341
E+ + ++ +SHDG+ L+ +G+V I+ + K + GH R +++ N
Sbjct: 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW----N 185
Query: 342 HVATSSADRTARLWNTDGSLLN----TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397
SS R+ + + D + N T QGH + +A+ G L + D ++WD
Sbjct: 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
Query: 398 VDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCG--LDALARVWDLRTGRSILALEGHVK 454
+ + + H+ +V +A+ P +L A+ G +D W+ TG + ++ +
Sbjct: 246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ 305
Query: 455 PVLGISFSPNGYHLAT--GGEDNTCRIWDLRKR--KSLYVIPAHSNLISQVKFEPQEGYF 510
V + +SP+ + + G DN IW IPAH + P +G
Sbjct: 306 -VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRI 363
Query: 511 LVTGSYDMTVKVWSGRDFKLVK 532
L T + D +K W D VK
Sbjct: 364 LSTAASDENLKFWRVYDGDHVK 385
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 10/244 (4%)
Query: 342 HVATSSADRTARLWNTDGSLLNTF--QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399
+V + +R +WN D ++ +A + + G +L + ++DV+
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164
Query: 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR-SILALEGHVKPVLG 458
+ +L GH V +++ + + +S D+R I L+GH V G
Sbjct: 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222
Query: 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT--GSY 516
+++ +G LA+GG DN +IWD R + H+ + V + P + L T G+
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282
Query: 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH--DRWIKLWSTRNKGDEH 574
D + W+ V ++ ++VTSL P + I + D + +WS + G
Sbjct: 283 DKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341
Query: 575 AMDV 578
+D+
Sbjct: 342 QVDI 345
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 24/195 (12%)
Query: 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIW----SMPRLQKFSALKGHTERATDVTF 336
T G + G ++ DG LA+ VV+IW S+P+ K H V +
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK----TNHNAAVKAVAW 267
Query: 337 SP-VSNHVAT--SSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGK-YLGTTSF-D 390
P SN +AT + D+ WN G+ +NT ++ + + P K + T F D
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPD 326
Query: 391 KTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA 448
+W + + + H V A PDG + ++ D + W + G
Sbjct: 327 NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG----- 381
Query: 449 LEGHVKPVLGISFSP 463
HVK + I+ +P
Sbjct: 382 --DHVKRPIPITKTP 394
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 93/205 (45%), Gaps = 15/205 (7%)
Query: 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRL--ARMAFHPSG 381
L GH ++F V + S D+TA++W +GSL+ Q H + A++
Sbjct: 100 LIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441
K+L T S DKT +LW D ++ H+ V +A DG SC D L ++ D
Sbjct: 157 KFL-TASADKTIKLWQNDKVIKTF-SGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXH 213
Query: 442 TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK--RKSLYVIPAHSNLIS 499
TG + EGH V I PNG + + GED T RIW K + +PA IS
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA----IS 268
Query: 500 QVKFEPQEGYFLVTGSYDMTVKVWS 524
+ ++ GS D V+++S
Sbjct: 269 IWSVDCXSNGDIIVGSSDNLVRIFS 293
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 15/149 (10%)
Query: 424 SLAASCGLDALARVW---DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---NTC 477
S AS D R+W D G + +G + V + L GG+D N
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV---CYDSEKELLLFGGKDTXINGV 86
Query: 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537
++ LY + H + + F Q+G +++GS+D T KVW ++ LV +L H
Sbjct: 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDG-VVISGSWDKTAKVW--KEGSLVYNLQAH 141
Query: 538 EAKVTSLDIHP-DEQSIATVSHDRWIKLW 565
A V + E T S D+ IKLW
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLW 170
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 30/230 (13%)
Query: 324 LKGHTERATDVTFSP-VSNHVATSSADRTARLWNTDGS--------LLNTFQGHLDRLAR 374
L+GH + ++++P ++ ++ ++S D T LW+ + + N F GH +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 375 MAFHPSGKYL-GTTSFDKTWRLWDV---DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430
+A+H + L G+ + D+ +WD +T + H+ V ++F+P + G
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 431 -LDALARVWDLRTGRSIL-ALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK--- 484
D +WDLR + L + E H + + +SP N LA+ G D +WDL K
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 358
Query: 485 -----------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ L++ H+ IS + P E + + + S D ++VW
Sbjct: 359 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 409 GHSRSVYGIAFHPD-GSLAASCGLDALARVWDL----RTGRSILA---LEGHVKPVLGIS 460
GH + YG++++P+ S D +WD+ + R I A GH V ++
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 461 FSPNGYHL------ATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEGYFL 511
+HL + +D IWD R K + + AH+ ++ + F P + L
Sbjct: 241 -----WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 512 VTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTRN 569
TGS D TV +W R+ KL + S H+ ++ + P ++I A+ DR + +W
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Query: 570 KGDEHAMD 577
G+E + +
Sbjct: 356 IGEEQSTE 363
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 30/230 (13%)
Query: 324 LKGHTERATDVTFSP-VSNHVATSSADRTARLWNTDGS--------LLNTFQGHLDRLAR 374
L+GH + ++++P ++ ++ ++S D T LW+ + + N F GH +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 375 MAFHPSGKYL-GTTSFDKTWRLWDV---DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430
+A+H + L G+ + D+ +WD +T + H+ V ++F+P + G
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 431 -LDALARVWDLRTGRSIL-ALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK--- 484
D +WDLR + L + E H + + +SP N LA+ G D +WDL K
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356
Query: 485 -----------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ L++ H+ IS + P E + + + S D ++VW
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 409 GHSRSVYGIAFHPD-GSLAASCGLDALARVWDL----RTGRSILA---LEGHVKPVLGIS 460
GH + YG++++P+ S D +WD+ + R I A GH V ++
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 461 FSPNGYHL------ATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEGYFL 511
+HL + +D IWD R K + + AH+ ++ + F P + L
Sbjct: 239 -----WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 512 VTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTRN 569
TGS D TV +W R+ KL + S H+ ++ + P ++I A+ DR + +W
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Query: 570 KGDEHAMD 577
G+E + +
Sbjct: 354 IGEEQSTE 361
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 30/230 (13%)
Query: 324 LKGHTERATDVTFSP-VSNHVATSSADRTARLWNTDGS--------LLNTFQGHLDRLAR 374
L+GH + ++++P ++ ++ ++S D T LW+ + + N F GH +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 375 MAFHPSGKYL-GTTSFDKTWRLWDV---DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430
+A+H + L G+ + D+ +WD +T + H+ V ++F+P + G
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 431 -LDALARVWDLRTGRSIL-ALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK--- 484
D +WDLR + L + E H + + +SP N LA+ G D +WDL K
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 360
Query: 485 -----------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ L++ H+ IS + P E + + + S D ++VW
Sbjct: 361 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 409 GHSRSVYGIAFHPD-GSLAASCGLDALARVWDL----RTGRSILA---LEGHVKPVLGIS 460
GH + YG++++P+ S D +WD+ + R I A GH V ++
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 461 FSPNGYHL------ATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEGYFL 511
+HL + +D IWD R K + + AH+ ++ + F P + L
Sbjct: 243 -----WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 512 VTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTRN 569
TGS D TV +W R+ KL + S H+ ++ + P ++I A+ DR + +W
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Query: 570 KGDEHAMD 577
G+E + +
Sbjct: 358 IGEEQSTE 365
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 324 LKGHTERATDVTFSP-VSNHVATSSADRTARLWNT-----DGSLLNT---FQGHLDRLAR 374
L+GH + ++++P +S H+ ++S D T LW+ +G +++ F GH +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 375 MAFHPSGKYL-GTTSFDKTWRLWDV---DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430
+++H + L G+ + D+ +WD +T + H+ V ++F+P + G
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 431 -LDALARVWDLRTGRSIL-ALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK--- 484
D +WDLR + L + E H + + +SP N LA+ G D +WDL K
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE 352
Query: 485 -----------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ L++ H+ IS + P E + + + S D ++VW
Sbjct: 353 EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Query: 409 GHSRSVYGIAFHPD--GSLAASCGLDALARVWDL----RTGRSILA---LEGHVKPVLGI 459
GH + YG++++P+ G L ++ D +WD+ + G+ + A GH V +
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASD-DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 233
Query: 460 SFSPNGYHL------ATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEGYF 510
S +HL + +D IWD R K + + AH+ ++ + F P +
Sbjct: 234 S-----WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 288
Query: 511 LVTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTR 568
L TGS D TV +W R+ KL + S H+ ++ + P ++I A+ DR + +W
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 569 NKGDEHA 575
G+E +
Sbjct: 349 KIGEEQS 355
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 447 LALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDL-------RKRKSLYVIPAHSNLI 498
L L GH K G+S++PN HL + +D+T +WD+ + + + H+ ++
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVV 230
Query: 499 SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK---SLSGHEAKVTSLDIHP-DEQSIA 554
V + + + D + +W R K S+ H A+V L +P E +A
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 555 TVSHDRWIKLWSTRN 569
T S D+ + LW RN
Sbjct: 291 TGSADKTVALWDLRN 305
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 30/230 (13%)
Query: 324 LKGHTERATDVTF-SPVSNHVATSSADRTARLWNTD-----GSLLNT---FQGHLDRLAR 374
L+GH + +++ S +S H+ ++S D T LW+ + G +++ F GH +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 375 MAFHPSGKYL-GTTSFDKTWRLWDV---DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430
+A+H + L G+ + D+ +WD T L + H+ V ++F+P + G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 431 -LDALARVWDLRTGR-SILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK--- 484
D +WDLR + + E H + + +SP N LA+ G D +WDL K
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 485 -----------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ L++ H+ IS + P E + + + S D +++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 409 GHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTG---------RSILALEGHVKPVL 457
GH + YG++++ + G L ++ D +WD+ G ++I GH V
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASD-DHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVE 233
Query: 458 GISFSPNGYHL------ATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEG 508
++ +HL + +D IWD R K +++ AH+ ++ + F P
Sbjct: 234 DVA-----WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 509 YFLVTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWS 566
+ L TGS D TV +W R+ KL + + H+ ++ + P ++I A+ DR + +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 567 TRNKGDEHAMD 577
G+E + +
Sbjct: 349 LSKIGEEQSAE 359
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 70/182 (38%), Gaps = 9/182 (4%)
Query: 315 MPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLAR 374
+PR + H E VT S + HV T ++W+ + LD L R
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNR 96
Query: 375 ------MAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIAFHPDGSLA 426
P G L T +WD+ + E + + Y +A PD +
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 427 ASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK 486
SC D VWDL + +GH I S +G L TGG DNT R WDLR+ +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 487 SL 488
L
Sbjct: 217 QL 218
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 4/189 (2%)
Query: 295 SHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354
S D + + G + +W + +GHT+ A+ + S + T D T R
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 355 WNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRS 413
W+ +G L ++ + + P+G++L + V+ + L H
Sbjct: 210 WDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESC 267
Query: 414 VYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473
V + F G S G D L W G SI + VL S + ++ TG
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG 326
Query: 474 DNTCRIWDL 482
D ++++
Sbjct: 327 DKKATVYEV 335
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 14/149 (9%)
Query: 430 GLDALARVWDL-----RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL-- 482
G +VWD+ ++ S L + P+G L GGE +T IWDL
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
Query: 483 ---RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539
R + L + + + P S D + VW + LV+ GH
Sbjct: 129 PTPRIKAEL---TSSAPACYALAISPDSKVCFSCCS-DGNIAVWDLHNQTLVRQFQGHTD 184
Query: 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
+ +DI D + T D ++ W R
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLR 213
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 30/230 (13%)
Query: 324 LKGHTERATDVTF-SPVSNHVATSSADRTARLWNTD-----GSLLNT---FQGHLDRLAR 374
L+GH + +++ S +S H+ ++S D T LW+ + G +++ F GH +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 375 MAFHPSGKYL-GTTSFDKTWRLWDV---DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430
+A+H + L G+ + D+ +WD T L + H+ V ++F+P + G
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 431 -LDALARVWDLRTGR-SILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK--- 484
D +WDLR + + E H + + +SP N LA+ G D +WDL K
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 485 -----------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
+ L++ H+ IS + P E + + + S D ++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 409 GHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTG---------RSILALEGHVKPVL 457
GH + YG++++ + G L ++ D +WD+ G ++I GH V
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASD-DHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVE 233
Query: 458 GISFSPNGYHL------ATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQEG 508
++ +HL + +D IWD R K +++ AH+ ++ + F P
Sbjct: 234 DVA-----WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 509 YFLVTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWS 566
+ L TGS D TV +W R+ KL + + H+ ++ + P ++I A+ DR + +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 567 TRNKGDEHAMD 577
G+E + +
Sbjct: 349 LSKIGEEQSAE 359
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 102/241 (42%), Gaps = 29/241 (12%)
Query: 359 GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ--EGHSRSVYG 416
GS++ H + + GK L T S DKT ++++V+ L+ GH V+
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR 60
Query: 417 IAF-HPD-GSLAASCGLDALARVWDLRTGR-SILALEG-HVKPVLGISFSPNGYH--LAT 470
+ + HP G++ ASC D +W GR S +A+ H V + ++P+ Y L
Sbjct: 61 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 120
Query: 471 GGEDNTCRIWDLRKR--KSLYVIPAHSNLISQVKFEP------------QEGYFLVTGSY 516
D + + ++ S +I AH+ ++ + P +E VTG
Sbjct: 121 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 517 DMTVKVWS----GRDFKLVKSLSGHEAKVTSLDIHPD---EQSIATVSHDRWIKLWSTRN 569
D VK+W + + L +L GH V + P +A+VS DR +W+ N
Sbjct: 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240
Query: 570 K 570
+
Sbjct: 241 E 241
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 30/228 (13%)
Query: 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAF-HPS-G 381
H E D +AT S+D+T +++ +G L++T GH + R+ + HP G
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 382 KYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARV 437
L + S+D +W + G ++ + HS SV + + P G L D V
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 438 WDLRTG--RSILALEGHVKPVLGISFSP-----NGYH--------LATGGEDNTCRIWDL 482
+ + S + ++ H V S++P +G H TGG DN +IW
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 483 RKRKSLYVIPA----HSNLISQVKFEPQEGY--FLVTGSYDMTVKVWS 524
YV+ + HS+ + V + P +L + S D T +W+
Sbjct: 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 301 LATSSLSGVVKIWSMPR-LQKF---SALKGHTERATDVTFSP---VSNHVATSSADRTAR 353
T +VKIW Q + S L+GH++ DV +SP + +++A+ S DRT
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 354 LW---NTDGSLLNTF---QGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
+W N G T + D L R ++ SG L + D LW
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAF-HPS- 380
H E D +AT S+D+T +++ +G L++T GH + R+ + HP
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 381 GKYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALAR 436
G L + S+D +W + G ++ + HS SV + + P G L D
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 437 VWDLRTG--RSILALEGHVKPVLGISFSP-----NGYH--------LATGGEDNTCRIWD 481
V + + S + ++ H V S++P +G H TGG DN +IW
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 482 LRKRKSLYVIPA----HSNLISQVKFEPQEGY--FLVTGSYDMTVKVWS 524
YV+ + HS+ + V + P +L + S D T +W+
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 490 VIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS--GRDFKLVKSLSGHEAKVTSLD-I 546
+ AH+ LI + G L T S D T+K++ G KL+ +L+GHE V +D
Sbjct: 4 IANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 547 HPDEQSI-ATVSHDRWIKLWSTRN 569
HP +I A+ S+D + +W N
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEEN 86
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 301 LATSSLSGVVKIWSMPR-LQKF---SALKGHTERATDVTFSP---VSNHVATSSADRTAR 353
T +VKIW Q + S L+GH++ DV +SP + +++A+ S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 354 LWNTDG-------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
+W D +LL + D L R ++ SG L + D LW
Sbjct: 233 IWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 46/238 (19%)
Query: 299 NLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL-WNT 357
N+LA+ +G + IW M + TE ++ ++P++ + SS D L WN
Sbjct: 127 NVLASGGNNGEIFIWDMNKC---------TESPSN--YTPLTPGQSMSSVDEVISLAWNQ 175
Query: 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL------LQEGHS 411
SL + F G+++F +WD+ E++ G
Sbjct: 176 --SLAHVFAS----------------AGSSNFAS---IWDLKAKKEVIHLSYTSPNSGIK 214
Query: 412 RSVYGIAFHPDGS--LAASCGLD--ALARVWDLRTGRSILAL--EGHVKPVLGISFSPNG 465
+ + + +HP S +A + G D +WDLR + L +GH K +L + +
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 466 YHLA-TGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522
HL + G DNT +W+ + L PA N + KF P+ S+D ++V
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 15/222 (6%)
Query: 359 GSLLNT--FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSV 414
GSL +T + H + PSG Y + R+WD +L S V
Sbjct: 47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 106
Query: 415 YGIAFHPDGSLAASCG--LDALARVWDLRTGRSILALEGHVKPVLGISFSPN-GYHLATG 471
I++ + A+ G + V+ TG S L G + + + F P+ + + +G
Sbjct: 107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166
Query: 472 GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531
+DNT I++ K H+ + V++ P F TG D T+ +++G D
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTKT 225
Query: 532 KSLS-------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566
H V L PD IA+ S D+ IK+W+
Sbjct: 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-------GHVKPVLGISFS 462
H++ V+ + ++PDGSL AS G D +++ G E H V G+++S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 463 PNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQ 500
P+G +A+ D T +IW++ K IP + + Q
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 12/223 (5%)
Query: 310 VKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQ-- 366
V I+ P + S HT+ V ++P + A++ D T L+N DG+ F+
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231
Query: 367 -----GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-GVELLLQEGHSRSVYGIAFH 420
H + + + P G + + S DKT ++W+V T VE + G +
Sbjct: 232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291
Query: 421 PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIW 480
S + + G GH K + +S S +G L + + W
Sbjct: 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351
Query: 481 DLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522
D+ S V P H+ +I+ +K + F V S+D +KV
Sbjct: 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTV--SWDDHLKV 392
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 128/334 (38%), Gaps = 48/334 (14%)
Query: 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPV--SNHVATSSA 348
G ++S DG +A++S +KIW++ L+ + T R D + + + SA
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISA 302
Query: 349 DRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-ELLL 406
+ N + GS+ GH + ++ GK L + + WD+ TG+ +
Sbjct: 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
Query: 407 QEGHSRSVYGIAFHPDGSL-------------AASCGLDALARVWDLRTGRSI------- 446
+ H+ + GI G L A G+D+ V + + + +
Sbjct: 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422
Query: 447 -----------LALEGHVK----PV----LGISFSPNGYHLATGGEDNTCRIWDLRKRKS 487
+A+ H K P+ ++ S + +A GG+D+ ++ L
Sbjct: 423 GDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482
Query: 488 LYV-IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL--VKSLSGHEAKVTSL 544
V H I+ V F + + T + +F+L S + H AKV +
Sbjct: 483 SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 542
Query: 545 DIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578
PD +AT S D + +W+ NK +H + +
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWN-MNKPSDHPIII 575
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 452 HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK 502
H V +S+SP+ LATG DN+ +W++ K +I ++ +S V
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 585
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 82/203 (40%), Gaps = 13/203 (6%)
Query: 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS 346
+PL G + S DG++ A ++ + I+S +L + + ++ V S VA
Sbjct: 413 QPL-GLAVSADGDI-AVAACYKHIAIYSHGKLTEVPI----SYNSSCVALSNDKQFVAVG 466
Query: 347 SADRTARLWNTDGSLLNTFQG--HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL 404
D ++ G+ ++ + H + +AF +G +L T + + V EL
Sbjct: 467 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526
Query: 405 LLQEG---HSRSVYGIAFHPDGSLAASCGLDALARVWDLR--TGRSILALEGHVKPVLGI 459
H+ V +++ PD A+ LD VW++ + I+ H +
Sbjct: 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS 586
Query: 460 SFSPNGYHLATGGEDNTCRIWDL 482
N + + G+D+ + W++
Sbjct: 587 VIWLNETTIVSAGQDSNIKFWNV 609
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 30/228 (13%)
Query: 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAF-HPS-G 381
H E D +AT S+D+T +++ +G L++T GH + R+ + HP G
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 382 KYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARV 437
L + S+D +W + G ++ + HS SV + + P G L D V
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 438 WDLRTG--RSILALEGHVKPVLGISFSP-----NGYH--------LATGGEDNTCRIWDL 482
+ + S + ++ H V S++P +G H TGG DN +IW
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 483 RKRKSLYVIPA----HSNLISQVKFEPQEGY--FLVTGSYDMTVKVWS 524
YV+ + HS+ + V + P +L + S D T +W+
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 488 LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS--GRDFKLVKSLSGHEAKVTSLD 545
+ + AH+ LI + G L T S D T+K++ G KL+ +L+GHE V +D
Sbjct: 2 VVIANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 546 -IHPDEQSI-ATVSHDRWIKLWSTRN 569
HP +I A+ S+D + +W N
Sbjct: 61 WAHPKFGTILASCSYDGKVLIWKEEN 86
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 301 LATSSLSGVVKIWSMPR-LQKF---SALKGHTERATDVTFSP---VSNHVATSSADRTAR 353
T +VKIW Q + S L+GH++ DV +SP + +++A+ S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 354 LW---NTDGSLLNTF---QGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
+W N G T + D L R ++ SG L + D LW
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 30/228 (13%)
Query: 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAF-HPS-G 381
H E D +AT S+D+T +++ +G L++T GH + R+ + HP G
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 382 KYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARV 437
L + S+D +W + G ++ + HS SV + + P G + D V
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 438 WDLRTG--RSILALEGHVKPVLGISFSP-----NGYH--------LATGGEDNTCRIWDL 482
+ + S + ++ H V S++P +G H TGG DN +IW
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 483 RKRKSLYVIPA----HSNLISQVKFEPQE--GYFLVTGSYDMTVKVWS 524
YV+ + HS+ + V + P ++ + S D T +W+
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 301 LATSSLSGVVKIWSMPR-LQKF---SALKGHTERATDVTFSP---VSNHVATSSADRTAR 353
T +VKIW Q + S L+GH++ DV +SP + +++A+ S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 354 LW---NTDGSLLNTF---QGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
+W N G T + D L R ++ SG L + D LW
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 488 LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS--GRDFKLVKSLSGHEAKVTSLD 545
+ + AH+ +I + G + T S D T+K++ G KL+ +L+GHE V +D
Sbjct: 2 VVIANAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 546 -IHPDEQSI-ATVSHDRWIKLWSTRN 569
HP +I A+ S+D + +W N
Sbjct: 61 WAHPKFGTILASCSYDGKVMIWKEEN 86
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 48/260 (18%)
Query: 316 PRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-----SLLNTFQGHLD 370
P +Q F + GH + DV + HVAT S+D+ +++ D L ++++ H
Sbjct: 1 PHMQPFDS--GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS 58
Query: 371 RLARM--AFHPSGKYLGTTSFDKTWRLWDVDTGVE---------LLLQEGHSRSVYGIAF 419
+ + A G+ + + S+DKT +LW+ D E L S+Y + F
Sbjct: 59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 118
Query: 420 HPD--GSLAASCGLDALARV-----------WDLRTGRSILAL--EGHVKPVLGISFSPN 464
P G A G D + R+ W L + +L++ H++ +S+ P+
Sbjct: 119 APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178
Query: 465 GY---HLATGGEDNTCRIWDLRKRKSLYV---IPAHSNLISQVKFEPQEGYF---LVTGS 515
+ LA + I+ K L+V +P H +LI + + P G + + TG
Sbjct: 179 RFSPEKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 516 YDMTVKVWSGRDFKLVKSLS 535
D +++ FK+ + LS
Sbjct: 238 KDGRIRI-----FKITEKLS 252
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 22/181 (12%)
Query: 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN-HVATSSADRTA 352
Y HD + +SS +K+W LQ E SPVS H + R
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGP 166
Query: 353 RLWNTD---GSLLNTFQGHLDRLARMAFHPSGKY-LGTTSFDKTWRLWDVDTGVELLL-- 406
++ D GS + QGH + +++ P Y L T S D +LWDV L+
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL 226
Query: 407 --------------QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGH 452
H+ V G+ F DG + G D R+W+ G + L G
Sbjct: 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK 286
Query: 453 V 453
V
Sbjct: 287 V 287
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 35/186 (18%)
Query: 324 LKGHTERATDVTFSPVSNHV-ATSSADRTARLWNT---DGSLLNTFQ------------- 366
L+GH + V++SP +++ AT+SAD +LW+ G L+ Q
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 367 -GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH--SRSVYGIAFHPDG 423
H ++ + F G +L T D RLW+ G L+ G + S G+ F
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF---- 297
Query: 424 SLAASCGLDA---------LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED 474
SCG + V+ + +G I L+GH K V F N L +G D
Sbjct: 298 --TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
Query: 475 NTCRIW 480
W
Sbjct: 356 CNILAW 361
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 29/184 (15%)
Query: 410 HSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRS--ILALE-----GHVKPVLGISF 461
H SV + ++P D + S D +VWD T ++ + E H+ PV
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV----- 152
Query: 462 SPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVK 521
S +A G ++ DL+ +++ H I V + P+ Y L T S D VK
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 522 VW---------------SGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565
+W +G+ + V+S + H KV L D + TV D ++LW
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 566 STRN 569
++ N
Sbjct: 273 NSSN 276
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 16/211 (7%)
Query: 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTT 387
T + T + +S N + T + RLWN G+LLN H + + ++ G ++ +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 388 SFDKTWRLWDVDTGVELL---LQEGHSRSVYGIAFHPDGSLAASC-----------GLDA 433
+ LW+V +G + L+E S+ DGSL G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG 227
Query: 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493
V+ + L GH P+ + F+ L + +D T RIW S
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524
HS I + + +++ S D +V++WS
Sbjct: 288 HSQSIVSASWVGDDK--VISCSMDGSVRLWS 316
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 65/255 (25%)
Query: 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352
++SHDGN + T +G +++W+ + L H V ++ H+ + +
Sbjct: 115 AWSHDGNSIVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVT 173
Query: 353 RLWNT-DGSLLNTFQ-----------------GHL---------DRL-------ARMAFH 378
LWN G+++ F+ G L D+ A +
Sbjct: 174 ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQ 233
Query: 379 -----PSGKYLG------------------TTSFDKTWRLWDVDTGVELLLQEGHSRSVY 415
P+GK +G + S D T R+W G GHS+S+
Sbjct: 234 ITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV 293
Query: 416 GIAFHPDGSLAASCGLDALARVWDLRTGRSILAL---EGHVKPVLGISFSPNGYHLATGG 472
++ D + SC +D R+W L+ ++LAL +G P+ S +G A
Sbjct: 294 SASWVGDDKV-ISCSMDGSVRLWSLKQ-NTLLALSIVDG--VPIFAGRISQDGQKYAVAF 349
Query: 473 EDNTCRIWDLRKRKS 487
D ++DL+K S
Sbjct: 350 MDGQVNVYDLKKLNS 364
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT 470
+ V +A+ DG+ + + R+W+ +TG + L H P++ + ++ +G H+ +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 471 GGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEG--------------YFLVTGS- 515
+N +W++ + S + E G F++ G
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 516 -----YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
Y +T K +G+ L GH ++ L+ + + + + S D +++W N
Sbjct: 227 GAIFVYQITEKTPTGK-------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279
Query: 571 GDEHAM 576
++
Sbjct: 280 NSQNCF 285
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 370 DRLARMAFHPS---GKYLGTTSFDKTWRLWDV-DTGVEL-LLQEGHSRSVYGIAFHPDGS 424
D + ++F P G +L S+ R W+V D+G + Q+ H+ V + + DGS
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 425 LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISF--SPNGYHLATGGEDNTCRIWDL 482
+ D A++WDL + ++I + H PV I + +PN + TG D T + WD
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 483 RKRKSLYVI 491
R + V+
Sbjct: 159 RSSNPMMVL 167
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 436 RVWDLR-TGRSI-LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493
R W+++ +G++I A + H PVL + +S +G + T D T ++WDL +++ I
Sbjct: 67 RCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQ 125
Query: 494 HSNLISQVKFEPQEGYFLV-TGSYDMTVKVWSGR 526
H + + + Y V TGS+D T+K W R
Sbjct: 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 298 GNLLATSSLSGVVKIW-------SMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR 350
GN L S + V+ W ++P+ Q+ HT DV +S + V T+S D+
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-----HTGPVLDVCWSDDGSKVFTASCDK 108
Query: 351 TARLWNTDGSLLNTFQGHLDRLARMAF--HPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408
TA++W+ + H + + + P+ + T S+DKT + WD + +++ +
Sbjct: 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168
Query: 409 GHSRSVYGIAFHPDGSLAAS 428
R +P +A +
Sbjct: 169 LPERCYCADVIYPMAVVATA 188
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 459 ISFSPN---GYHLATGGEDNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEPQEGYFL 511
+SFSP G L G N R W+++ S IP H+ + V + +G +
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQTIPKAQQMHTGPVLDVCWS-DDGSKV 101
Query: 512 VTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH----PDEQSIATVSHDRWIKLWST 567
T S D T K+W + ++ ++ H+A V + IH P+ + T S D+ +K W T
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT--IHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 568 R 568
R
Sbjct: 159 R 159
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLA 469
+V GIAFHP A+ G D WD + E +P+ F+ NG A
Sbjct: 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 375 MAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA 427
+AFHP L T D + WD D +L E + + F+ +G++ A
Sbjct: 279 IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515
V GI+F P LAT G D WD R L IS F F S
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335
Query: 516 YDMTVKVWS-GRDF 528
YD WS G +F
Sbjct: 336 YD-----WSKGHEF 344
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 48/260 (18%)
Query: 316 PRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-----SLLNTFQGHLD 370
P Q F + GH + DV + HVAT S+D+ +++ D L ++++ H
Sbjct: 1 PHXQPFDS--GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS 58
Query: 371 RLARM--AFHPSGKYLGTTSFDKTWRLWDVDTGVE---------LLLQEGHSRSVYGIAF 419
+ + A G+ + + S+DKT +LW+ D E L S+Y + F
Sbjct: 59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 118
Query: 420 HPD--GSLAASCGLDALARV-----------WDLRTGRSILAL--EGHVKPVLGISFSPN 464
P G A G D + R+ W L + +L++ H++ +S+ P+
Sbjct: 119 APAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPS 178
Query: 465 GY---HLATGGEDNTCRIWDLRKRKSLYV---IPAHSNLISQVKFEPQEGYF---LVTGS 515
+ LA + I+ K L+V +P H +LI + + P G + + TG
Sbjct: 179 RFSPEKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 516 YDMTVKVWSGRDFKLVKSLS 535
D +++ FK+ + LS
Sbjct: 238 KDGRIRI-----FKITEKLS 252
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 367 GHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDV-DTGVELLLQE------GHSRSVYGIA 418
GH + +A+ P + + + S D T +W++ D G+ L L+E GH++ V +A
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 419 FHPDG-SLAASCGLDALARVWDLRTGRSILALEGHVKP--VLGISFSPNGYHLATGGEDN 475
+HP ++ S G D + VWD+ TG ++L L V P + + +S +G + T D
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 476 TCRIWDLRK--------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT---VKVWS 524
R+ + RK R P H+ +S EG L TG M+ V +W
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-------EGKILTTGFSRMSERQVALWD 251
Query: 525 GRDFKLVKSL 534
+ + SL
Sbjct: 252 TKHLEEPLSL 261
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 441 RTGRSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWD-------LRKRKSLYVIP 492
R +++ + GH PVL I++ P N +A+G ED T +W+ L R+ + +
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL--DIHPDE 550
H+ + V + P L++ D + VW G A V +L D+HPD
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD----------VGTGAAVLTLGPDVHPDT 178
Query: 551 QSIATVSHDRWIKLWSTRNK 570
S D + S R+K
Sbjct: 179 IYSVDWSRDGALICTSCRDK 198
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 62/245 (25%)
Query: 296 HDGNLLATSSLSGVVKIWS-------MPRLQKFSALKGHTERATDVTFSPVSNHVATSSA 348
H+ N++A+ S V +W +P + L+GHT+R V + P + +V S+
Sbjct: 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-- 406
D +WDV TG +L
Sbjct: 152 X----------------------------------------DNVILVWDVGTGAAVLTLG 171
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL----ALEGHVKPVLGISFS 462
+ H ++Y + + DG+L + D RV + R G + EG +PV + F
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG-TRPVHAV-FV 229
Query: 463 PNGYHLATGGEDNTCR---IWD---LRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY 516
G L TG + R +WD L + SL + S ++ F+P + G
Sbjct: 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKG 288
Query: 517 DMTVK 521
D +++
Sbjct: 289 DSSIR 293
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 29/190 (15%)
Query: 367 GHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDV-DTGVELLLQE------GHSRSVYGIA 418
GH + +A+ P + + + S D T +W++ D G+ L L+E GH++ V +A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 419 FHPDG-SLAASCGLDALARVWDLRTGRSILALEGHVKP--VLGISFSPNGYHLATGGEDN 475
+HP ++ S G D + VWD+ TG ++L L V P + + +S +G + T D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 476 TCRIWDLRK--------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT---VKVWS 524
R+ + RK R P H+ +S EG L TG M+ V +W
Sbjct: 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-------EGKILTTGFSRMSERQVALWD 251
Query: 525 GRDFKLVKSL 534
+ + SL
Sbjct: 252 TKHLEEPLSL 261
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 20/140 (14%)
Query: 441 RTGRSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWD-------LRKRKSLYVIP 492
R +++ + GH PVL I++ P N +A+G ED T +W+ L R+ + +
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL--DIHPDE 550
H+ + V + P L++ D + VW G A V +L D+HPD
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD----------VGTGAAVLTLGPDVHPDT 178
Query: 551 QSIATVSHDRWIKLWSTRNK 570
S D + S R+K
Sbjct: 179 IYSVDWSRDGALICTSCRDK 198
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 62/245 (25%)
Query: 296 HDGNLLATSSLSGVVKIWS-------MPRLQKFSALKGHTERATDVTFSPVSNHVATSSA 348
H+ N++A+ S V +W +P + L+GHT+R V + P + +V S+
Sbjct: 92 HNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Query: 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-- 406
D +WDV TG +L
Sbjct: 152 ----------------------------------------CDNVILVWDVGTGAAVLTLG 171
Query: 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL----ALEGHVKPVLGISFS 462
+ H ++Y + + DG+L + D RV + R G + EG +PV + F
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG-TRPVHAV-FV 229
Query: 463 PNGYHLATGGEDNTCR---IWD---LRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY 516
G L TG + R +WD L + SL + S ++ F+P + G
Sbjct: 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKG 288
Query: 517 DMTVK 521
D +++
Sbjct: 289 DSSIR 293
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH 342
+G +RPL+ Y+ +G+LL + S +W ++ L GHT + + +
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 343 VATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYL 384
T SAD + +LW+ ++G + T++ + + R+ F P G Y
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYF 130
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL 468
GH R + + ++ +G L SC D+ A VW G + L+GH + I +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 469 ATGGEDNTCRIWDLRKRKSLYV----IPAHSNLISQVKFEPQEGYFL 511
TG D + ++WD+ + + +P + +V+F P YFL
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPVP-----VKRVEFSPCGNYFL 131
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 23/213 (10%)
Query: 367 GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426
GH L ++ ++ G L + S D + +W G L +GH+ +++ I
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 427 ASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCR------I 479
+ D ++WD+ G+ + + V PV + FSP G Y LA DN + I
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAI--LDNVMKNPGSINI 146
Query: 480 WDLRK-----------RKSLYVIPAHSNL-ISQVKFEPQEGYFLVTGSYDMTVKVWS-GR 526
+++ + + ++ I H L + V +G +++ G D + +
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 527 DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD 559
+++ V S+ HE ++ + PD T S D
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGK 382
L GH T V ++ + + + S D +A +W + +G L T GH + + K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 383 YLGTTSFDKTWRLWDVDTG 401
Y T S D + +LWDV G
Sbjct: 88 YCVTGSADYSIKLWDVSNG 106
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 447 LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506
+ L GH +P+ + ++ G L + +D++ +W + L + H+ I + +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 507 EGYFLVTGSYDMTVKVW 523
Y VTGS D ++K+W
Sbjct: 86 TKY-CVTGSADYSIKLW 101
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484
++++ GR ++GH P+ ++ SP G A+GGED R+ K
Sbjct: 302 KIFEEEIGR----VQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 109/258 (42%), Gaps = 48/258 (18%)
Query: 318 LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-----SLLNTFQGHLDRL 372
+Q F + GH + DV + HVAT S+D+ +++ D L ++++ H +
Sbjct: 1 MQPFDS--GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSI 58
Query: 373 ARM--AFHPSGKYLGTTSFDKTWRLWDVDTGVE---------LLLQEGHSRSVYGIAFHP 421
+ A G+ + + S+DKT +LW+ D E L S+Y + F P
Sbjct: 59 VAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 118
Query: 422 D--GSLAASCGLDALARV-----------WDLRTGRSILAL--EGHVKPVLGISFSPNGY 466
G A G D + R+ W L + +L++ H++ +S+ P+ +
Sbjct: 119 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF 178
Query: 467 ---HLATGGEDNTCRIWDLRKRKSLYV---IPAHSNLISQVKFEPQEGYF---LVTGSYD 517
LA + I+ K L+V +P H +LI + + P G + + TG D
Sbjct: 179 SPEKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 237
Query: 518 MTVKVWSGRDFKLVKSLS 535
+++ FK+ + LS
Sbjct: 238 GRIRI-----FKITEKLS 250
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425
Q H+ + ++ F PSG+ L ++S D ++W V G GH +V IA G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 426 AASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
S LD R+W+ TG +I P G++
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 227
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS 552
AH + I+++KF P G L++ S DM +K+WS +D ++L GH A VT + I ++
Sbjct: 134 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 553 IATVSHDRWIKLW 565
+ + S D I+LW
Sbjct: 193 VLSASLDGTIRLW 205
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKY 383
+ H T + F P + +SS D ++W+ DGS T GH + +A G+
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 384 LGTTSFDKTWRLWDVDTGVEL 404
+ + S D T RLW+ TG +
Sbjct: 193 VLSASLDGTIRLWECGTGTTI 213
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 335 TFSPVSNHVATSSADRTARLWNT---DGSLLNTFQGHLDRLARMAFHPSGK-----YLGT 386
TF V +H+ + D L+NT DGS + L R A + LGT
Sbjct: 60 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKM------LKRADYTAVDTAKLQMRRFILGT 113
Query: 387 TSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI 446
T D ++ D + ++ + + H + + F P G S D ++W ++ G +
Sbjct: 114 TEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 447 LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN 496
L GH V I+ G ++ + D T R+W+ +++ N
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357
G L +SS +KIWS+ L GH TD+ +V ++S D T RLW
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 358 -DGSLLNTFQ 366
G+ ++TF
Sbjct: 208 GTGTTIHTFN 217
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 450 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGY 509
+ HV + + F P+G L + +D +IW ++ + + H ++ + G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI-IDRGR 191
Query: 510 FLVTGSYDMTVKVW 523
+++ S D T+++W
Sbjct: 192 NVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%)
Query: 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425
Q H+ + ++ F PSG+ L ++S D ++W V G GH +V IA G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 426 AASCGLDALARVWDLRTGRSILALEGHVKPVLGIS 460
S LD R+W+ TG +I P G++
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS 552
AH + I+++KF P G L++ S DM +K+WS +D ++L GH A VT + I ++
Sbjct: 137 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 553 IATVSHDRWIKLW 565
+ + S D I+LW
Sbjct: 196 VLSASLDGTIRLW 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKY 383
+ H T + F P + +SS D ++W+ DGS T GH + +A G+
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 384 LGTTSFDKTWRLWDVDTGVEL 404
+ + S D T RLW+ TG +
Sbjct: 196 VLSASLDGTIRLWECGTGTTI 216
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 16/170 (9%)
Query: 335 TFSPVSNHVATSSADRTARLWNT---DGSLLNTFQGHLDRLARMAFHPSGK-----YLGT 386
TF V +H+ + D L+NT DGS + L R A + LGT
Sbjct: 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKM------LKRADYTAVDTAKLQMRRFILGT 116
Query: 387 TSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI 446
T D ++ D + ++ + + H + + F P G S D ++W ++ G +
Sbjct: 117 TEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 447 LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN 496
L GH V I+ G ++ + D T R+W+ +++ N
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357
G L +SS +KIWS+ L GH TD+ +V ++S D T RLW
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 358 -DGSLLNTFQ 366
G+ ++TF
Sbjct: 211 GTGTTIHTFN 220
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 450 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGY 509
+ HV + + F P+G L + +D +IW ++ + + H ++ + G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI-IDRGR 194
Query: 510 FLVTGSYDMTVKVW 523
+++ S D T+++W
Sbjct: 195 NVLSASLDGTIRLW 208
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 30/228 (13%)
Query: 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAF-HPS-G 381
H E D AT S+D+T +++ +G L++T GH + R+ + HP G
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 382 KYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARV 437
L + S+D +W + G ++ + HS SV + + P G D V
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 438 WDLRTG--RSILALEGHVKPVLGISFSP-----NGYH--------LATGGEDNTCRIWDL 482
+ + S + ++ H V S++P +G H TGG DN +IW
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 483 RKRKSLYVIPA----HSNLISQVKFEPQE--GYFLVTGSYDMTVKVWS 524
YV+ + HS+ + V + P + + S D T +W+
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWT 235
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 301 LATSSLSGVVKIWSMPR-LQKF---SALKGHTERATDVTFSP---VSNHVATSSADRTAR 353
T +VKIW Q + S L+GH++ DV +SP + ++ A+ S DRT
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 354 LW---NTDGSLLNTF---QGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
+W N G T + D L R ++ SG L + D LW
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 508 GYFLVTGSYDMTVKVWS--GRDFKLVKSLSGHEAKVTSLD-IHPDEQSI-ATVSHDRWIK 563
G T S D T+K++ G KL+ +L+GHE V +D HP +I A+ S+D +
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 564 LWSTRN 569
+W N
Sbjct: 81 IWKEEN 86
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 436 RVWDLRTG----RSILALEGHVKPVLGISFSPNGYHL-ATGGEDNTCRIWDLRK-RKSLY 489
++WD R IL+L G P+ + PN H+ ATGG+D IWD+R+ +
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 490 VIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
++ AH + +V F P L T S D ++ W
Sbjct: 275 LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 394 RLWDV----DTGVELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTG-RSIL 447
++WD + ++L G ++ + HP+ + A+ G D + +WD+R G +
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 448 ALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQ 500
L+ H + + F P N HL T ED + WD +P S+L Q
Sbjct: 275 LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD-----VPEKSSLFHQ 323
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 286 DRPLSGCSYSHDGN----LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS- 340
D C++++D N LLA + G+++I + +Q GH ++ F P
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 341 NHVATSSADRTARLWN----TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
N + + S D RLWN T ++ +GH D + + G+ + + D + +LW
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 397 DVDT 400
+++
Sbjct: 188 RINS 191
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 406 LQEGHSRSVYGIAFH-----PDGSLAASCGLDALARVWDLRTGRSILALEGHVKP----- 455
L+E H++ ++G+ F+ D + A+ G + + +++ + I L+ +V
Sbjct: 12 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADEN 70
Query: 456 --VLGISFSPNGYH--LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511
++ N H LA G RI + + + H N I+++KF P++ L
Sbjct: 71 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL 130
Query: 512 VTGSYDMTVKVWSGRDFKLVK---SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
++ S D +++W+ + LV + GH +V S D + I + D +KLW
Sbjct: 131 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
Query: 569 NK 570
+K
Sbjct: 191 SK 192
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 409 GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSIL---ALEGHVKPVLGISFSPN 464
GH ++ + FHP D +L S D R+W+++T + +EGH VL +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVI 491
G + + G D++ ++W + ++ + I
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 362 LNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLL---QEGHSRSVYGI 417
+ + GH + + + FHP L + S D RLW++ T + + EGH V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALE 450
+ G SCG+D ++W + + R + A++
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 286 DRPLSGCSYSHDGN----LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS- 340
D C++++D N LLA + G+++I + +Q GH ++ F P
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 123
Query: 341 NHVATSSADRTARLWN----TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
N + + S D RLWN T ++ +GH D + + G+ + + D + +LW
Sbjct: 124 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Query: 397 DVDT 400
+++
Sbjct: 184 RINS 187
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 406 LQEGHSRSVYGIAFH-----PDGSLAASCGLDALARVWDLRTGRSILALEGHVKP----- 455
L+E H++ ++G+ F+ D + A+ G + + +++ + I L+ +V
Sbjct: 8 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADEN 66
Query: 456 --VLGISFSPNGYH--LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511
++ N H LA G RI + + + H N I+++KF P++ L
Sbjct: 67 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL 126
Query: 512 VTGSYDMTVKVWSGRDFKLVK---SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
++ S D +++W+ + LV + GH +V S D + I + D +KLW
Sbjct: 127 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
Query: 569 NK 570
+K
Sbjct: 187 SK 188
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 409 GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSIL---ALEGHVKPVLGISFSPN 464
GH ++ + FHP D +L S D R+W+++T + +EGH VL +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVI 491
G + + G D++ ++W + ++ + I
Sbjct: 168 GEKIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 362 LNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLL---QEGHSRSVYGI 417
+ + GH + + + FHP L + S D RLW++ T + + EGH V
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALE 450
+ G SCG+D ++W + + R + A++
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 286 DRPLSGCSYSHDGN----LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS- 340
D C++++D N LLA + G+++I + +Q GH ++ F P
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 128
Query: 341 NHVATSSADRTARLWN----TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
N + + S D RLWN T ++ +GH D + + G+ + + D + +LW
Sbjct: 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Query: 397 DVDT 400
+++
Sbjct: 189 RINS 192
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 406 LQEGHSRSVYGIAFH-----PDGSLAASCGLDALARVWDLRTGRSILALEGHVKP----- 455
L+E H++ ++G+ F+ D + A+ G + + +++ + I L+ +V
Sbjct: 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADEN 71
Query: 456 --VLGISFSPNGYH--LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511
++ N H LA G RI + + + H N I+++KF P++ L
Sbjct: 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL 131
Query: 512 VTGSYDMTVKVWSGRDFKLVK---SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
++ S D +++W+ + LV + GH +V S D + I + D +KLW
Sbjct: 132 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
Query: 569 NK 570
+K
Sbjct: 192 SK 193
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 409 GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSIL---ALEGHVKPVLGISFSPN 464
GH ++ + FHP D +L S D R+W+++T + +EGH VL +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVI 491
G + + G D++ ++W + ++ + I
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 362 LNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLL---QEGHSRSVYGI 417
+ + GH + + + FHP L + S D RLW++ T + + EGH V
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALE 450
+ G SCG+D ++W + + R + A++
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 286 DRPLSGCSYSHDGN----LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS- 340
D C++++D N LLA + G+++I + +Q GH ++ F P
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 127
Query: 341 NHVATSSADRTARLWN----TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
N + + S D RLWN T ++ +GH D + + G+ + + D + +LW
Sbjct: 128 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Query: 397 DVDT 400
+++
Sbjct: 188 RINS 191
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 406 LQEGHSRSVYGIAFH-----PDGSLAASCGLDALARVWDLRTGRSILALEGHVKP----- 455
L+E H++ ++G+ F+ D + A+ G + + +++ + I L+ +V
Sbjct: 12 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADEN 70
Query: 456 --VLGISFSPNGYH--LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511
++ N H LA G RI + + + H N I+++KF P++ L
Sbjct: 71 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL 130
Query: 512 VTGSYDMTVKVWSGRDFKLVK---SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
++ S D +++W+ + LV + GH +V S D + I + D +KLW
Sbjct: 131 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
Query: 569 NK 570
+K
Sbjct: 191 SK 192
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 409 GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSIL---ALEGHVKPVLGISFSPN 464
GH ++ + FHP D +L S D R+W+++T + +EGH VL +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVI 491
G + + G D++ ++W + ++ + I
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 362 LNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLL---QEGHSRSVYGI 417
+ + GH + + + FHP L + S D RLW++ T + + EGH V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALE 450
+ G SCG+D ++W + + R + A++
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 286 DRPLSGCSYSHDGN----LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS- 340
D C++++D N LLA + G+++I + +Q GH ++ F P
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 164
Query: 341 NHVATSSADRTARLWN----TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396
N + + S D RLWN T ++ +GH D + + G+ + + D + +LW
Sbjct: 165 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Query: 397 DVDT 400
+++
Sbjct: 225 RINS 228
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 406 LQEGHSRSVYGIAFH-----PDGSLAASCGLDALARVWDLRTGRSILALEGHVKP----- 455
L+E H++ ++G+ F+ D + A+ G + + +++ + I L+ +V
Sbjct: 49 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVT-LYECHSQGEIRLLQSYVDADADEN 107
Query: 456 --VLGISFSPNGYH--LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511
++ N H LA G RI + + + H N I+++KF P++ L
Sbjct: 108 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL 167
Query: 512 VTGSYDMTVKVWSGRDFKLVK---SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568
++ S D +++W+ + LV + GH +V S D + I + D +KLW
Sbjct: 168 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
Query: 569 NK 570
+K
Sbjct: 228 SK 229
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 409 GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSIL---ALEGHVKPVLGISFSPN 464
GH ++ + FHP D +L S D R+W+++T + +EGH VL +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 465 GYHLATGGEDNTCRIWDLRKRKSLYVI 491
G + + G D++ ++W + ++ + I
Sbjct: 209 GEKIMSCGMDHSLKLWRINSKRMMNAI 235
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 365 FQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLL---QEGHSRSVYGIAFH 420
+ GH + + + FHP L + S D RLW++ T + + EGH V +
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 421 PDGSLAASCGLDALARVWDLRTGRSILALE 450
G SCG+D ++W + + R + A++
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 20/198 (10%)
Query: 375 MAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP---DGSLAASCG 430
+ F P SG+++ T D+ +D +G L E V G F D A+ G
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 431 LDALARVWDLRTGRSI----LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK 486
DA RVWD+ T + + L + +G+ + NG + + D T ++L +
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYELGHDE 330
Query: 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDI 546
L I H+ I+ + P L++GSYD + WS H + SLD
Sbjct: 331 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLD- 379
Query: 547 HPDEQSIATVSHDRWIKL 564
+ Q +++S D +K+
Sbjct: 380 NSKAQEYSSISWDDTLKV 397
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP---DE 550
+ + V+F P G F++T D + + G+ + +K + + V D
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 551 QSIATVSHDRWIKLW 565
Q ATV D I++W
Sbjct: 265 QKFATVGADATIRVW 279
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEGY-------- 509
IS SP+ ++A G ++DL+ R+ A ++ I+ + ++P E
Sbjct: 494 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 510 -FLVTGSYDMTVKVWS-GRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567
+ TGS D + ++S R K++K+L+ H+ V +L + ++ + D IK W+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKRWNV 612
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 8/174 (4%)
Query: 394 RLWDVDTGVELLLQE----GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL 449
LW++D L++ + H V ++ G+ A S D +VWDL + +
Sbjct: 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY 165
Query: 450 EGHVKPVLGISFSPNGYHL-ATGGEDNTCRIWDLR--KRKSLYVIPAHSNLISQVKFEPQ 506
H V ++ SP+ + + EDN +WD R K S A L + + + PQ
Sbjct: 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225
Query: 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS-IATVSHD 559
+ V G + TV + + V S + H VT L P +A++S D
Sbjct: 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)
Query: 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLA 426
H D ++ ++ SG + S D ++WD+ V L H+ V +A P S+
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 427 ASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH-------------LATGGE 473
SC D +WD R KP I S GY G E
Sbjct: 186 LSCSEDNRILLWDTRCP----------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235
Query: 474 DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522
+ T + D + + HS ++ + F P FL + S D ++ V
Sbjct: 236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 65/172 (37%), Gaps = 37/172 (21%)
Query: 292 CSYSHDGNLLATSSLSG-----------VVKIWSMPRLQKFSALKGHTERATDVTFSPVS 340
C Y HD + S LS +K+W + + S+ + H + T V SP
Sbjct: 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181
Query: 341 NHVATS-SADRTARLWNT-----DGSLLNTFQGHLDRLARMAFHPS-------GKYLGTT 387
+ V S S D LW+T + + G+L +A+HP G GT
Sbjct: 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP--TSLAWHPQQSEVFVFGDENGTV 239
Query: 388 SFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD-----GSLAASCGLDAL 434
S L D + +L HS+ V G+ F P SL+ C L L
Sbjct: 240 S------LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 375 MAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP---DGSLAASCG 430
+ F P SG+++ T D+ +D +G L E V G F D A+ G
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG 271
Query: 431 LDALARVWDLRTGRSI----LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK 486
DA RVWD+ T + + L + +G+ + NG + + D T ++L +
Sbjct: 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYELGHDE 330
Query: 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523
L I H+ I+ + P L++GSYD + W
Sbjct: 331 VLKTISGHNKGITALTVNP-----LISGSYDGRIXEW 362
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP---DE 550
+ + V+F P G F++T D + + G+ + +K + + V D
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 551 QSIATVSHDRWIKLW 565
Q ATV D I++W
Sbjct: 265 QKFATVGADATIRVW 279
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEGY-------- 509
IS SP+ ++A G ++DL+ R+ A ++ I+ + ++P E
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 510 -FLVTGSYDMTVKVWS-GRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567
+ TGS D + ++S R K++K+L+ H+ V +L + ++ + D IK W+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKRWNV 612
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 13/220 (5%)
Query: 329 ERATDVTFSPV-SNHVATSSADRTARLWNTDGSLLNTFQ---GHLDRLARMAFHP-SGKY 383
RAT + + P + VA S LWN TF G + + F+P +
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 384 LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT- 442
+S + T RL D + + + +++ + S D + V L
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239
Query: 443 GRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKS----LYVIPAHSNL 497
G+ + L H K V ++ +P + LAT D T +IWDLR+ + LY +P H +
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHP 298
Query: 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537
++ F P +G L+T ++V+S + L H
Sbjct: 299 VNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK----LVKSLSGHEAKV 541
K L+ + H ++ V P +FL T S D TVK+W R + + SL H V
Sbjct: 241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPV 299
Query: 542 TSLDIHPDEQSIATVSHDRWIKLWS 566
+ PD + T I+++S
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 13/220 (5%)
Query: 329 ERATDVTFSPV-SNHVATSSADRTARLWNTDGSLLNTFQ---GHLDRLARMAFHP-SGKY 383
RAT + + P + VA S LWN TF G + + F+P +
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 384 LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT- 442
+S + T RL D + + + +++ + S D + V L
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239
Query: 443 GRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKS----LYVIPAHSNL 497
G+ + L H K V ++ +P + LAT D T +IWDLR+ + LY +P H +
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHP 298
Query: 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537
++ F P +G L+T ++V+S + L H
Sbjct: 299 VNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK----LVKSLSGHEAKV 541
K L+ + H ++ V P +FL T S D TVK+W R + + SL H V
Sbjct: 241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPV 299
Query: 542 TSLDIHPDEQSIATVSHDRWIKLWS 566
+ PD + T I+++S
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 13/220 (5%)
Query: 329 ERATDVTFSPV-SNHVATSSADRTARLWNTDGSLLNTFQ---GHLDRLARMAFHP-SGKY 383
RAT + + P + VA S LWN TF G + + F+P +
Sbjct: 121 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQ 180
Query: 384 LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT- 442
+S + T RL D + + + +++ + S D + V L
Sbjct: 181 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 240
Query: 443 GRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKS----LYVIPAHSNL 497
G+ + L H K V ++ +P + LAT D T +IWDLR+ + LY +P H +
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHP 299
Query: 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537
++ F P +G L+T ++V+S + L H
Sbjct: 300 VNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPH 338
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK----LVKSLSGHEAKV 541
K L+ + H ++ V P +FL T S D TVK+W R + + SL H V
Sbjct: 242 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPV 300
Query: 542 TSLDIHPDEQSIATVSHDRWIKLWS 566
+ PD + T I+++S
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 449 LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR--KSLYVIPAHSNLISQVKFEPQ 506
L+ H V GI ++P+ + T G D +W L+ R K VI + V++ P
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 507 EGYFLV-TGSYDMTVKVWSG-RDFKLVKSLSGH-EAKVTSLDIHPDEQSIATVSHD 559
E F V +GS +++ + D+ + K + + V SLD HP+ +A S D
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDL--RTGRSILALEGHVKPVLGISFSPNGYH 467
H+ V GI + PD + +CG D A VW L RT + L + + + ++PN
Sbjct: 51 HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 468 LATGGEDNTCRIWDLRKRKSLYVI-----PAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522
A G I + +V P S ++S + + P L GS D ++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS-LDWHPNS-VLLAAGSCDFKCRI 168
Query: 523 WSG 525
+S
Sbjct: 169 FSA 171
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 33/246 (13%)
Query: 288 PLSGCSYSHDGNLLATSSLSGVVKIW--SMPRLQKFSALKGHTERATDVTFSPVSNHVAT 345
P+S +++ D +A + V I+ S + + LK H + T + ++P SN + T
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 346 SSADRTARLWNTDGSLLNTFQGHL-----DRLARMA-FHPSGKYLGTTSFDKTWRLW--- 396
DR A +W G T++ L +R AR + P+ K S + +
Sbjct: 70 CGTDRNAYVWTLKG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126
Query: 397 -DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD---------------- 439
+ D V +++ +V + +HP+ L A+ D R++
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186
Query: 440 --LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL 497
+ G + V G+ FS NG +A D+T + D K+ ++ + + +
Sbjct: 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 246
Query: 498 ISQVKF 503
+ V F
Sbjct: 247 LLAVTF 252
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
SG + V L H +VT +D PD I T DR +W+ + +
Sbjct: 38 SGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 436 RVWDLRTGRSIL----ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491
+W++ S+L A H V +S +G +GG+D + ++WDL ++ L
Sbjct: 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177
Query: 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL--SGHEAKVTSLDIHPD 549
AHS+ ++ V P + ++ D + +W R K + + TS+ HP+
Sbjct: 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE 237
Query: 550 E 550
+
Sbjct: 238 K 238
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 7/158 (4%)
Query: 394 RLWDVDTGVELLLQE----GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL 449
LW++ LL+ + H V ++ DG+ A S G D +VWDL + +
Sbjct: 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177
Query: 450 EGHVKPVLGISFSPNGYHL-ATGGEDNTCRIWDLRKRKSLYVI--PAHSNLISQVKFEPQ 506
H V ++ P + + GED +WD RK K I A + + V + P+
Sbjct: 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE 237
Query: 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544
+ G V + + ++ ++ + H +T L
Sbjct: 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 478 RIWDLRKRKSLYVIP----AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS 533
+W++ +++SL V H +++ + +G V+G D +VKVW ++KS
Sbjct: 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKS 176
Query: 534 LSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTR 568
+ H ++V + P + +I + D I LW TR
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 449 LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR--KSLYVIPAHSNLISQVKFEPQ 506
L+ H V G+ ++P+ + T G D +W L+ R K VI + V++ P
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107
Query: 507 EGYFLV-TGSYDMTVKVWSG-RDFKLVKSLSGH-EAKVTSLDIHPDEQSIATVSHD 559
E F V +GS +++ + D+ + K + + V SLD HP+ +A S D
Sbjct: 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDL--RTGRSILALEGHVKPVLGISFSPNGYH 467
H+ V G+ + PD + +CG D A VW L RT + L + + + ++PN
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 468 LATGGEDNTCRIWDLRKRKSLYVI-----PAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522
A G I + +V P S ++S + + P L GS D ++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS-LDWHPNS-VLLAAGSCDFKCRI 168
Query: 523 WSG 525
+S
Sbjct: 169 FSA 171
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 97/246 (39%), Gaps = 33/246 (13%)
Query: 288 PLSGCSYSHDGNLLATSSLSGVVKIW--SMPRLQKFSALKGHTERATDVTFSPVSNHVAT 345
P+S +++ D +A + V I+ S + + LK H + T V ++P SN + T
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 346 SSADRTARLWNTDGSLLNTFQGHL-----DRLARMA-FHPSGKYLGTTSFDKTWRLW--- 396
DR A +W G T++ L +R AR + P+ K S + +
Sbjct: 70 CGTDRNAYVWTLKG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126
Query: 397 -DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD---------------- 439
+ D V +++ +V + +HP+ L A+ D R++
Sbjct: 127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186
Query: 440 --LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL 497
+ G + V G+ FS NG +A D+T + D K+ ++ + + +
Sbjct: 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 246
Query: 498 ISQVKF 503
+ V F
Sbjct: 247 LLAVTF 252
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570
SG + V L H +VT +D PD I T DR +W+ + +
Sbjct: 38 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 403 ELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGR---SILALEGHVKPVLG 458
E+ ++ H V F+P L A+ +DA ++WDLR + S +A H KPV
Sbjct: 195 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA 254
Query: 459 ISFSP-NGYHLATGGEDNTCRIW 480
F+P + L T + N R++
Sbjct: 255 AYFNPTDSTKLLTTDQRNEIRVY 277
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 446 ILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLR--KRKSLYVIPA-HSNLISQV 501
I + H V F+P + +AT D T ++WDLR K K+ Y+ H ++
Sbjct: 196 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAA 255
Query: 502 KFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ 551
F P + L+T ++V+S D+ +K + IHP Q
Sbjct: 256 YFNPTDSTKLLTTDQRNEIRVYSSYDW----------SKPDQIIIHPHRQ 295
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG---HEAKVTSLDIHP-D 549
H ++ +F P+ + + T S D TVK+W R+ K S HE V + +P D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 550 EQSIATVSHDRWIKLWST 567
+ T I+++S+
Sbjct: 262 STKLLTTDQRNEIRVYSS 279
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 403 ELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGR---SILALEGHVKPVLG 458
E+ ++ H V F+P L A+ +DA ++WDLR + S +A H KPV
Sbjct: 196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA 255
Query: 459 ISFSP-NGYHLATGGEDNTCRIW 480
F+P + L T + N R++
Sbjct: 256 AYFNPTDSTKLLTTDQRNEIRVY 278
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 452 HVKPVLGISFSPNG-YHLATGGEDNTCRIWDLR--KRKSLYVIPA-HSNLISQVKFEPQE 507
H V F+P + +AT D T ++WDLR K K+ Y+ H ++ F P +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 508 GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ 551
L+T ++V+S D+ +K + IHP Q
Sbjct: 263 STKLLTTDQRNEIRVYSSYDW----------SKPDQIIIHPHRQ 296
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG---HEAKVTSLDIHP-D 549
H ++ +F P+ + + T S D TVK+W R+ K S HE V + +P D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 550 EQSIATVSHDRWIKLWST 567
+ T I+++S+
Sbjct: 263 STKLLTTDQRNEIRVYSS 280
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 410 HSRSVYGIAFHPDGSLAA------SCGLDAL------ARVWDL----RTGRSILALEGHV 453
+S S+ + F P GSL A S G L R+ L + ++ L H
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 454 KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI 498
V+ +SF+ +G L + G D R WD++ ++ + + H + I
Sbjct: 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPV 456
HS V ++F+ G S G D R WD++T I L H +
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 410 HSRSVYGIAFHPDGSLAA------SCGLDAL------ARVWDL----RTGRSILALEGHV 453
+S S+ + F P GSL A S G L R+ L + ++ L H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 301
Query: 454 KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI 498
V+ +SF+ +G L + G D R WD++ ++ + + H + I
Sbjct: 302 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 423 GSLAASCGLDALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYH--LATGGEDNTCR 478
G+ A+C D +++D+R G IL L GH PV ++++ Y LA+ D
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 479 IWDLRKRKSLYVI----PAHSNLISQVKFEPQE-GYFLVTGSYDMTVKV 522
IW R+ + H + ++ V + P + G L GS D + +
Sbjct: 85 IW--REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
Query: 406 LQEGHSRSVYGIAFHPD-------GSLAASCGLDALARVW--DLRTGRSILALEGHVKPV 456
+Q+G + +V+ + P G+ A G+ L + DL+ R I KP+
Sbjct: 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----EKAKPI 68
Query: 457 LGISF---SPNGYHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQEGYF-- 510
+F S +LATG IW+L +Y + H +I+ + G
Sbjct: 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG 128
Query: 511 ---LVTGSYDMTVKVWSGR 526
+VTGS D TVKVW R
Sbjct: 129 APEIVTGSRDGTVKVWDPR 147
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488
PV I FSP L T G D W+L+ RK +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488
PV I FSP L T G D W+L+ RK +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488
PV I FSP L T G D W+L+ RK +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488
PV I FSP L T G D W+L+ RK +
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530
R R+ V P + +I+ F + YF G YDM + VW G + ++
Sbjct: 221 RSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEI 268
>pdb|2I1W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|B Chain B, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|C Chain C, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|D Chain D, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I29|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I2A|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2B|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2C|A Chain A, Crystal Structure Of Lmnadk1
pdb|2I2D|A Chain A, Crystal Structure Of Lmnadk1
pdb|4DY6|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 2'-Phosphate
Bis(Adenosine)-5'-Diphosphate
pdb|3V7U|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With Mta
pdb|3V7W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 5'-Azido-5'-Deoxyadenosine
pdb|3V7Y|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-N-Propargylamino-5'-Deoxyadenosine
pdb|3V80|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-O-Propargylamino-5'-Deoxyadenosine
pdb|3V8M|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complexe With
5'-Azido-8-Bromo-5'-Deoxyadenosine
pdb|3V8N|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
8-Bromo-5'-Amino-5'-Deoxyadenosine, Reacted With A
Citrate Molecule In N Site
pdb|3V8P|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With A New Di-Adenosine
Inhibitor Formed In Situ
Length = 272
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVY 415
DG+ L+ F + +RL +AF G + G F WR + D V+LL + + + Y
Sbjct: 45 DGTFLSAFHQYEERLDEIAF--IGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSY 100
>pdb|2Q5F|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|3V8Q|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-5'-Deoxyadenosine
pdb|3V8R|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-8-Bromo-5'-Deoxyadenosine
Length = 272
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVY 415
DG+ L+ F + +RL +AF G + G F WR + D V+LL + + + Y
Sbjct: 45 DGTFLSAFHQYEERLDEIAF--IGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSY 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,133,062
Number of Sequences: 62578
Number of extensions: 516455
Number of successful extensions: 2829
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1085
Number of HSP's gapped (non-prelim): 538
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)