Query 008050
Match_columns 579
No_of_seqs 1083 out of 2464
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 18:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-82 3.3E-87 617.2 35.6 442 114-566 14-458 (459)
2 KOG0289 mRNA splicing factor [ 100.0 3.3E-47 7.3E-52 371.3 36.8 418 115-567 74-505 (506)
3 KOG0271 Notchless-like WD40 re 100.0 1.1E-47 2.5E-52 369.1 26.5 296 277-574 106-445 (480)
4 KOG0286 G-protein beta subunit 100.0 3.6E-44 7.7E-49 334.7 37.6 290 275-566 44-343 (343)
5 KOG0271 Notchless-like WD40 re 100.0 8.5E-45 1.9E-49 349.2 25.0 286 279-566 150-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 9.2E-41 2E-45 325.6 27.2 249 326-575 173-425 (459)
7 KOG0284 Polyadenylation factor 100.0 1.1E-41 2.4E-46 330.5 19.1 291 281-571 91-383 (464)
8 KOG0279 G protein beta subunit 100.0 9.8E-39 2.1E-43 296.7 33.0 291 275-568 4-313 (315)
9 KOG0295 WD40 repeat-containing 100.0 1.9E-39 4.1E-44 311.1 25.6 295 272-567 94-405 (406)
10 KOG0273 Beta-transducin family 100.0 9.1E-39 2E-43 315.3 28.6 291 284-575 176-489 (524)
11 cd00200 WD40 WD40 domain, foun 100.0 5E-37 1.1E-41 304.4 39.2 285 281-566 4-289 (289)
12 KOG0315 G-protein beta subunit 100.0 3.3E-37 7.2E-42 282.0 30.5 276 298-576 10-296 (311)
13 KOG0285 Pleiotropic regulator 100.0 1.1E-37 2.5E-42 297.8 27.1 294 274-570 139-441 (460)
14 KOG0273 Beta-transducin family 100.0 7.2E-37 1.6E-41 301.9 32.1 280 285-568 234-523 (524)
15 KOG0266 WD40 repeat-containing 100.0 4.6E-36 9.9E-41 320.5 34.6 290 278-568 150-454 (456)
16 KOG0265 U5 snRNP-specific prot 100.0 3.6E-36 7.9E-41 282.2 29.1 284 281-566 42-336 (338)
17 KOG0296 Angio-associated migra 100.0 1.2E-35 2.7E-40 285.1 32.0 286 280-568 58-398 (399)
18 KOG0263 Transcription initiati 100.0 4.9E-37 1.1E-41 320.9 23.8 274 286-571 378-652 (707)
19 KOG0645 WD40 repeat protein [G 100.0 5.2E-35 1.1E-39 270.9 33.6 286 276-568 4-311 (312)
20 KOG0291 WD40-repeat-containing 100.0 6.9E-35 1.5E-39 301.7 34.8 305 272-578 293-622 (893)
21 KOG0291 WD40-repeat-containing 100.0 1.1E-34 2.3E-39 300.3 36.1 291 285-577 264-559 (893)
22 KOG0279 G protein beta subunit 100.0 4E-35 8.8E-40 272.7 29.4 257 319-579 6-273 (315)
23 KOG0286 G-protein beta subunit 100.0 2E-34 4.4E-39 269.4 31.2 250 321-572 48-307 (343)
24 KOG0293 WD40 repeat-containing 100.0 3E-35 6.6E-40 285.8 24.5 290 279-570 217-515 (519)
25 KOG0282 mRNA splicing factor [ 100.0 2.7E-36 5.9E-41 299.0 17.6 288 278-566 206-503 (503)
26 KOG0319 WD40-repeat-containing 100.0 8.3E-35 1.8E-39 301.1 28.1 294 274-569 311-620 (775)
27 KOG0319 WD40-repeat-containing 100.0 1E-34 2.3E-39 300.3 28.8 293 285-578 104-587 (775)
28 PLN00181 protein SPA1-RELATED; 100.0 2.1E-33 4.5E-38 321.2 42.3 282 282-567 479-792 (793)
29 KOG0276 Vesicle coat complex C 100.0 1.3E-34 2.8E-39 294.0 27.3 282 281-563 8-294 (794)
30 KOG0263 Transcription initiati 100.0 7.9E-35 1.7E-39 304.4 24.0 260 278-556 443-703 (707)
31 KOG0318 WD40 repeat stress pro 100.0 4.3E-33 9.3E-38 278.4 34.4 296 274-572 178-564 (603)
32 KOG0285 Pleiotropic regulator 100.0 1.6E-34 3.4E-39 276.4 22.4 254 318-574 141-395 (460)
33 KOG0315 G-protein beta subunit 100.0 4.1E-33 8.9E-38 255.2 29.6 268 278-547 32-309 (311)
34 KOG0281 Beta-TrCP (transducin 100.0 3.4E-35 7.4E-40 279.7 15.6 274 283-571 194-480 (499)
35 KOG0313 Microtubule binding pr 100.0 3.1E-33 6.7E-38 269.8 27.9 280 284-569 103-419 (423)
36 KOG0316 Conserved WD40 repeat- 100.0 4.1E-33 8.9E-38 253.3 26.7 281 281-567 12-298 (307)
37 KOG0295 WD40 repeat-containing 100.0 4.6E-34 1E-38 274.1 21.3 261 317-577 97-373 (406)
38 KOG0306 WD40-repeat-containing 100.0 6E-33 1.3E-37 287.3 29.9 285 281-569 368-665 (888)
39 KOG0643 Translation initiation 100.0 3.2E-33 6.9E-38 258.4 24.4 289 281-570 5-319 (327)
40 KOG0284 Polyadenylation factor 100.0 1.5E-34 3.3E-39 280.9 13.7 250 274-525 126-379 (464)
41 KOG0318 WD40 repeat stress pro 100.0 1.9E-31 4.2E-36 266.6 35.2 288 282-573 55-355 (603)
42 KOG0275 Conserved WD40 repeat- 100.0 1.1E-33 2.5E-38 267.0 17.2 283 282-566 209-507 (508)
43 KOG0278 Serine/threonine kinas 100.0 2.9E-33 6.2E-38 256.2 18.9 286 281-571 9-300 (334)
44 KOG0277 Peroxisomal targeting 100.0 1.3E-32 2.9E-37 252.6 22.1 278 290-567 12-308 (311)
45 KOG0292 Vesicle coat complex C 100.0 2.9E-32 6.4E-37 285.9 27.5 284 285-570 8-323 (1202)
46 KOG0266 WD40 repeat-containing 100.0 1.5E-31 3.3E-36 285.8 31.9 249 327-576 158-417 (456)
47 KOG0316 Conserved WD40 repeat- 100.0 5E-32 1.1E-36 246.2 22.7 252 320-576 9-265 (307)
48 KOG0274 Cdc4 and related F-box 100.0 3.2E-31 6.9E-36 283.1 31.7 280 284-575 206-489 (537)
49 KOG0772 Uncharacterized conser 100.0 1.7E-31 3.6E-36 266.2 26.7 295 276-571 157-490 (641)
50 cd00200 WD40 WD40 domain, foun 100.0 1.6E-30 3.5E-35 257.6 33.7 253 322-575 3-256 (289)
51 KOG0640 mRNA cleavage stimulat 100.0 5.8E-32 1.3E-36 254.4 21.7 290 279-568 105-426 (430)
52 KOG0265 U5 snRNP-specific prot 100.0 1.7E-31 3.8E-36 250.8 24.2 252 321-574 40-302 (338)
53 KOG0288 WD40 repeat protein Ti 100.0 9.2E-32 2E-36 262.0 22.9 281 281-566 170-459 (459)
54 PLN00181 protein SPA1-RELATED; 100.0 4E-30 8.7E-35 294.1 38.8 260 307-570 457-740 (793)
55 KOG0305 Anaphase promoting com 100.0 8.4E-31 1.8E-35 270.2 29.8 277 289-570 180-463 (484)
56 KOG0276 Vesicle coat complex C 100.0 3.5E-31 7.6E-36 269.1 23.6 255 323-577 8-266 (794)
57 KOG1407 WD40 repeat protein [F 100.0 3.7E-30 8E-35 237.5 28.1 286 280-569 14-312 (313)
58 KOG0283 WD40 repeat-containing 100.0 3.7E-31 7.9E-36 279.3 24.4 293 272-570 252-578 (712)
59 KOG0268 Sof1-like rRNA process 100.0 7.5E-32 1.6E-36 258.7 16.8 289 278-573 58-350 (433)
60 KOG1446 Histone H3 (Lys4) meth 100.0 3.8E-29 8.3E-34 237.3 34.8 282 284-570 12-305 (311)
61 KOG0973 Histone transcription 100.0 5.2E-30 1.1E-34 276.8 29.8 292 284-575 11-362 (942)
62 KOG0300 WD40 repeat-containing 100.0 1.9E-30 4E-35 244.8 23.0 294 275-571 137-479 (481)
63 KOG0282 mRNA splicing factor [ 100.0 1.8E-31 3.9E-36 264.9 14.9 257 318-576 204-470 (503)
64 KOG0281 Beta-TrCP (transducin 100.0 8.9E-32 1.9E-36 256.4 11.8 233 327-572 196-432 (499)
65 KOG0645 WD40 repeat protein [G 100.0 8.4E-29 1.8E-33 229.7 31.2 243 319-569 5-262 (312)
66 KOG0641 WD40 repeat protein [G 100.0 3.8E-28 8.3E-33 219.5 33.6 284 283-568 29-349 (350)
67 KOG0293 WD40 repeat-containing 100.0 2.1E-30 4.6E-35 252.2 19.9 252 275-527 258-514 (519)
68 KOG0310 Conserved WD40 repeat- 100.0 1.9E-29 4.2E-34 250.9 26.8 280 286-569 26-310 (487)
69 KOG0299 U3 snoRNP-associated p 100.0 7.8E-29 1.7E-33 244.8 29.1 284 280-567 136-455 (479)
70 PTZ00421 coronin; Provisional 100.0 5.4E-28 1.2E-32 257.9 36.7 261 288-549 22-314 (493)
71 KOG0296 Angio-associated migra 100.0 7.9E-29 1.7E-33 238.4 25.6 253 321-575 57-363 (399)
72 KOG0292 Vesicle coat complex C 100.0 2.1E-29 4.5E-34 264.6 22.5 252 324-576 5-288 (1202)
73 PTZ00420 coronin; Provisional 100.0 1.1E-27 2.3E-32 256.9 36.2 244 304-550 50-318 (568)
74 KOG0308 Conserved WD40 repeat- 100.0 8.7E-30 1.9E-34 260.5 18.3 277 291-568 29-327 (735)
75 PTZ00421 coronin; Provisional 100.0 8.7E-28 1.9E-32 256.3 33.6 245 329-573 21-295 (493)
76 KOG0275 Conserved WD40 repeat- 100.0 1.5E-29 3.3E-34 239.2 17.3 252 326-578 211-477 (508)
77 KOG0274 Cdc4 and related F-box 100.0 9.2E-28 2E-32 256.6 28.8 256 273-538 236-494 (537)
78 KOG0313 Microtubule binding pr 100.0 6.4E-28 1.4E-32 233.1 24.4 241 326-571 103-379 (423)
79 KOG0647 mRNA export protein (c 100.0 1.2E-27 2.6E-32 225.1 25.6 268 285-556 26-311 (347)
80 KOG0306 WD40-repeat-containing 100.0 3.8E-27 8.2E-32 244.5 31.6 286 286-576 320-630 (888)
81 KOG0301 Phospholipase A2-activ 100.0 8.7E-28 1.9E-32 247.6 26.2 285 274-571 2-291 (745)
82 KOG1036 Mitotic spindle checkp 100.0 2.8E-27 6.1E-32 223.6 27.1 267 286-558 13-294 (323)
83 KOG0277 Peroxisomal targeting 100.0 1.7E-28 3.6E-33 225.7 18.1 241 285-525 59-308 (311)
84 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-26 3.9E-31 219.2 31.6 253 321-576 7-270 (311)
85 KOG0294 WD40 repeat-containing 100.0 4.8E-27 1E-31 222.2 27.1 264 301-571 4-284 (362)
86 KOG1408 WD40 repeat protein [F 100.0 2.5E-27 5.4E-32 243.8 25.5 280 289-569 327-714 (1080)
87 KOG1407 WD40 repeat protein [F 100.0 2.8E-27 6E-32 218.5 22.8 254 322-578 14-271 (313)
88 KOG0264 Nucleosome remodeling 100.0 3.6E-27 7.8E-32 233.3 23.9 244 325-568 121-404 (422)
89 KOG0305 Anaphase promoting com 100.0 5.4E-27 1.2E-31 242.1 25.3 239 286-528 217-463 (484)
90 KOG0294 WD40 repeat-containing 100.0 3.1E-26 6.6E-31 216.8 27.5 259 281-546 38-305 (362)
91 PTZ00420 coronin; Provisional 100.0 1.3E-25 2.8E-30 240.9 36.0 223 346-570 50-295 (568)
92 KOG0639 Transducin-like enhanc 100.0 2.3E-27 5E-32 235.8 20.3 281 282-567 415-703 (705)
93 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.4E-25 1.2E-29 222.4 37.9 276 298-578 1-289 (300)
94 KOG0643 Translation initiation 100.0 4.3E-26 9.3E-31 211.2 25.7 233 323-558 5-251 (327)
95 KOG0310 Conserved WD40 repeat- 100.0 1.3E-26 2.7E-31 230.9 23.6 236 286-524 68-307 (487)
96 KOG0288 WD40 repeat protein Ti 100.0 6E-27 1.3E-31 228.5 19.8 245 275-523 208-458 (459)
97 KOG0278 Serine/threonine kinas 99.9 1.6E-27 3.4E-32 218.6 14.5 248 277-529 50-300 (334)
98 KOG2096 WD40 repeat protein [G 99.9 8.1E-26 1.8E-30 213.9 26.1 286 278-567 78-401 (420)
99 KOG1539 WD repeat protein [Gen 99.9 2.4E-25 5.2E-30 233.7 29.0 292 286-579 244-617 (910)
100 KOG0264 Nucleosome remodeling 99.9 6.6E-26 1.4E-30 224.4 22.3 245 282-526 120-404 (422)
101 KOG0289 mRNA splicing factor [ 99.9 1.5E-25 3.2E-30 219.9 24.5 239 328-567 219-461 (506)
102 KOG2055 WD40 repeat protein [G 99.9 2.3E-25 5E-30 220.2 25.8 281 286-568 213-512 (514)
103 KOG1273 WD40 repeat protein [G 99.9 2E-25 4.3E-30 211.1 24.0 287 289-578 26-332 (405)
104 KOG0973 Histone transcription 99.9 1.8E-25 3.8E-30 241.9 26.1 249 278-527 61-356 (942)
105 KOG0299 U3 snoRNP-associated p 99.9 1.9E-25 4.1E-30 221.0 22.7 247 321-570 135-412 (479)
106 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.6E-30 224.6 20.9 256 322-578 161-455 (641)
107 KOG0646 WD40 repeat protein [G 99.9 3E-25 6.5E-30 220.0 23.4 265 308-575 18-314 (476)
108 KOG0641 WD40 repeat protein [G 99.9 7.6E-24 1.6E-28 191.7 29.8 249 276-526 79-349 (350)
109 KOG0308 Conserved WD40 repeat- 99.9 4.9E-26 1.1E-30 233.1 17.5 237 333-570 29-287 (735)
110 KOG0267 Microtubule severing p 99.9 5E-27 1.1E-31 242.8 10.3 256 298-560 4-260 (825)
111 KOG0650 WD40 repeat nucleolar 99.9 3.2E-25 6.9E-30 225.1 22.3 289 273-565 385-732 (733)
112 KOG0640 mRNA cleavage stimulat 99.9 2.8E-25 6.1E-30 209.5 19.8 251 322-573 106-388 (430)
113 KOG4283 Transcription-coupled 99.9 2.5E-24 5.5E-29 201.8 25.7 283 283-568 40-365 (397)
114 KOG0269 WD40 repeat-containing 99.9 1.2E-25 2.7E-30 234.2 18.2 282 287-570 40-342 (839)
115 KOG1274 WD40 repeat protein [G 99.9 4E-24 8.6E-29 227.1 29.5 276 283-565 10-297 (933)
116 KOG1332 Vesicle coat complex C 99.9 5.3E-25 1.2E-29 201.6 18.8 252 325-576 8-294 (299)
117 KOG0646 WD40 repeat protein [G 99.9 7E-25 1.5E-29 217.4 19.8 239 286-525 81-349 (476)
118 KOG1274 WD40 repeat protein [G 99.9 5.1E-24 1.1E-28 226.2 27.3 241 326-569 11-263 (933)
119 KOG0301 Phospholipase A2-activ 99.9 1.3E-24 2.8E-29 224.3 22.2 241 318-568 4-249 (745)
120 KOG0300 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 203.8 20.5 263 300-571 126-431 (481)
121 KOG0283 WD40 repeat-containing 99.9 1.3E-24 2.8E-29 229.9 20.6 252 320-576 258-540 (712)
122 KOG1332 Vesicle coat complex C 99.9 2.2E-24 4.8E-29 197.6 18.3 244 281-525 6-285 (299)
123 KOG0268 Sof1-like rRNA process 99.9 4.8E-25 1E-29 212.0 14.0 243 323-573 61-307 (433)
124 KOG0267 Microtubule severing p 99.9 1.3E-25 2.9E-30 232.3 10.0 235 282-517 24-259 (825)
125 KOG1036 Mitotic spindle checkp 99.9 3.2E-23 6.8E-28 196.2 24.2 244 327-576 12-270 (323)
126 KOG2048 WD40 repeat protein [G 99.9 1.4E-22 3E-27 209.1 30.9 279 286-569 25-320 (691)
127 KOG2445 Nuclear pore complex c 99.9 5.2E-23 1.1E-27 194.4 24.9 246 325-571 10-321 (361)
128 KOG0647 mRNA export protein (c 99.9 3.9E-23 8.5E-28 194.8 23.4 245 326-575 25-288 (347)
129 KOG0302 Ribosome Assembly prot 99.9 3.5E-23 7.6E-28 200.2 23.1 246 277-524 142-436 (440)
130 KOG4328 WD40 protein [Function 99.9 4.9E-23 1.1E-27 203.7 24.5 289 280-569 180-496 (498)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-21 3.4E-26 197.0 36.0 255 288-548 32-300 (300)
132 KOG0639 Transducin-like enhanc 99.9 4.2E-24 9.1E-29 212.7 16.4 245 326-574 417-669 (705)
133 KOG2106 Uncharacterized conser 99.9 1.3E-21 2.9E-26 195.3 32.7 272 286-568 246-521 (626)
134 KOG2445 Nuclear pore complex c 99.9 2.7E-22 5.8E-27 189.6 26.1 266 279-547 6-341 (361)
135 KOG0321 WD40 repeat-containing 99.9 5.5E-23 1.2E-27 210.5 22.0 282 291-573 54-396 (720)
136 KOG1063 RNA polymerase II elon 99.9 1.5E-22 3.2E-27 209.1 25.1 290 280-570 261-650 (764)
137 KOG1408 WD40 repeat protein [F 99.9 3.2E-23 7E-28 213.8 20.1 244 283-527 456-714 (1080)
138 KOG0269 WD40 repeat-containing 99.9 8E-24 1.7E-28 220.8 15.1 240 289-528 90-342 (839)
139 KOG0270 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 198.3 23.9 276 293-571 132-452 (463)
140 KOG2106 Uncharacterized conser 99.9 6.1E-21 1.3E-25 190.7 33.0 281 284-572 152-481 (626)
141 KOG1063 RNA polymerase II elon 99.9 9.2E-22 2E-26 203.3 25.4 295 274-569 179-603 (764)
142 KOG2048 WD40 repeat protein [G 99.9 4E-21 8.8E-26 198.4 29.9 243 327-572 24-279 (691)
143 KOG0307 Vesicle coat complex C 99.9 2.2E-23 4.8E-28 226.6 13.9 281 290-571 10-330 (1049)
144 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-22 5.7E-27 199.8 20.2 267 303-571 7-283 (673)
145 COG2319 FOG: WD40 repeat [Gene 99.9 6.4E-20 1.4E-24 191.3 39.6 289 281-571 60-362 (466)
146 KOG1539 WD repeat protein [Gen 99.9 7.7E-21 1.7E-25 200.1 32.0 288 289-578 162-533 (910)
147 KOG2919 Guanine nucleotide-bin 99.9 1.9E-21 4.1E-26 184.8 23.8 271 288-560 51-362 (406)
148 KOG1538 Uncharacterized conser 99.9 1E-21 2.2E-26 201.3 23.5 273 288-569 14-294 (1081)
149 KOG0302 Ribosome Assembly prot 99.9 9.6E-22 2.1E-26 190.3 21.6 239 326-566 149-436 (440)
150 KOG4328 WD40 protein [Function 99.9 7.3E-22 1.6E-26 195.4 20.7 261 313-575 171-457 (498)
151 KOG4283 Transcription-coupled 99.9 6.6E-22 1.4E-26 185.7 18.8 206 366-572 40-280 (397)
152 KOG2055 WD40 repeat protein [G 99.9 1.9E-21 4.2E-26 192.6 21.2 241 327-569 212-468 (514)
153 KOG1009 Chromatin assembly com 99.9 6.1E-21 1.3E-25 186.5 24.3 288 285-573 12-377 (434)
154 KOG0270 WD40 repeat-containing 99.9 1.5E-21 3.1E-26 192.8 19.7 234 298-531 192-454 (463)
155 KOG1445 Tumor-specific antigen 99.9 1.3E-21 2.7E-26 199.7 18.9 116 456-571 630-753 (1012)
156 KOG2096 WD40 repeat protein [G 99.9 1.9E-20 4.2E-25 177.6 23.4 250 323-575 81-367 (420)
157 KOG0307 Vesicle coat complex C 99.9 6.1E-22 1.3E-26 215.5 14.6 244 286-529 64-330 (1049)
158 COG2319 FOG: WD40 repeat [Gene 99.9 1.6E-18 3.6E-23 180.6 40.0 289 277-569 146-443 (466)
159 KOG1034 Transcriptional repres 99.9 4.8E-20 1E-24 175.8 24.6 286 279-568 31-383 (385)
160 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-20 2.3E-25 188.5 20.5 260 288-550 36-305 (673)
161 KOG4227 WD40 repeat protein [G 99.9 3.9E-20 8.4E-25 179.5 22.9 287 280-568 50-387 (609)
162 KOG0321 WD40 repeat-containing 99.9 1.9E-20 4.1E-25 192.0 19.4 284 282-567 96-444 (720)
163 KOG1273 WD40 repeat protein [G 99.9 5.3E-20 1.1E-24 174.5 20.8 243 331-575 26-287 (405)
164 KOG1587 Cytoplasmic dynein int 99.9 9.7E-19 2.1E-23 186.1 32.8 263 307-569 221-517 (555)
165 KOG1188 WD40 repeat protein [G 99.8 7.1E-20 1.5E-24 175.6 19.7 268 299-568 41-346 (376)
166 KOG1007 WD repeat protein TSSC 99.8 1.8E-19 4E-24 169.0 22.0 269 299-569 27-362 (370)
167 KOG0322 G-protein beta subunit 99.8 2.9E-20 6.4E-25 172.4 15.7 281 282-567 10-322 (323)
168 KOG0642 Cell-cycle nuclear pro 99.8 2E-20 4.3E-25 189.9 15.3 263 274-538 282-573 (577)
169 KOG0644 Uncharacterized conser 99.8 1.2E-20 2.6E-25 198.1 11.5 283 279-571 183-471 (1113)
170 KOG0649 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 155.1 27.5 267 289-566 13-314 (325)
171 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.5E-23 166.0 21.9 241 330-572 51-331 (406)
172 KOG1963 WD40 repeat protein [G 99.8 7.1E-18 1.5E-22 179.6 29.7 288 282-570 201-540 (792)
173 KOG0650 WD40 repeat nucleolar 99.8 6.7E-19 1.4E-23 179.4 21.0 243 322-567 394-679 (733)
174 KOG0642 Cell-cycle nuclear pro 99.8 1.5E-19 3.1E-24 183.6 14.4 252 322-575 288-568 (577)
175 PRK11028 6-phosphogluconolacto 99.8 5.3E-17 1.1E-21 167.3 32.2 264 302-569 6-305 (330)
176 KOG1517 Guanine nucleotide bin 99.8 4.1E-18 9E-23 183.3 24.4 287 283-572 1061-1385(1387)
177 KOG0303 Actin-binding protein 99.8 3.7E-18 8E-23 166.4 21.6 231 297-529 43-297 (472)
178 KOG1524 WD40 repeat-containing 99.8 2.2E-18 4.8E-23 173.4 19.5 264 284-565 12-283 (737)
179 KOG1034 Transcriptional repres 99.8 3E-18 6.6E-23 163.6 19.1 239 284-525 87-382 (385)
180 KOG0290 Conserved WD40 repeat- 99.8 2.4E-17 5.1E-22 155.1 23.7 276 287-566 45-363 (364)
181 KOG1310 WD40 repeat protein [G 99.8 3.7E-18 8E-23 172.3 19.5 213 273-485 37-305 (758)
182 KOG1538 Uncharacterized conser 99.8 3.7E-18 8E-23 175.5 19.7 243 277-526 44-293 (1081)
183 KOG1334 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 175.5 13.5 297 273-569 129-467 (559)
184 KOG1523 Actin-related protein 99.8 2E-17 4.4E-22 157.6 21.8 220 286-505 10-259 (361)
185 KOG1272 WD40-repeat-containing 99.8 1.2E-18 2.7E-23 172.9 11.4 270 288-564 131-405 (545)
186 KOG0303 Actin-binding protein 99.8 5.6E-17 1.2E-21 158.2 22.6 207 362-571 74-297 (472)
187 KOG2110 Uncharacterized conser 99.8 2.5E-15 5.3E-20 146.1 32.6 279 285-570 4-332 (391)
188 KOG1007 WD repeat protein TSSC 99.8 3E-17 6.5E-22 154.2 18.7 223 349-573 39-294 (370)
189 PRK01742 tolB translocation pr 99.8 6.3E-17 1.4E-21 172.5 22.5 234 307-549 183-426 (429)
190 KOG1009 Chromatin assembly com 99.7 1.6E-16 3.4E-21 155.9 21.4 256 274-531 53-377 (434)
191 KOG1587 Cytoplasmic dynein int 99.7 1.4E-16 3.1E-21 169.6 23.0 241 286-527 242-517 (555)
192 KOG2321 WD40 repeat protein [G 99.7 5.8E-16 1.2E-20 157.6 25.4 284 284-570 49-345 (703)
193 KOG1240 Protein kinase contain 99.7 2.6E-16 5.6E-21 172.2 24.1 289 277-566 1039-1431(1431)
194 KOG2110 Uncharacterized conser 99.7 3E-15 6.5E-20 145.5 28.3 236 328-571 5-251 (391)
195 PRK11028 6-phosphogluconolacto 99.7 5.3E-15 1.2E-19 152.4 31.7 238 286-526 34-304 (330)
196 KOG0649 WD40 repeat protein [G 99.7 1.4E-15 3E-20 140.0 23.6 229 330-568 12-274 (325)
197 KOG1188 WD40 repeat protein [G 99.7 1.7E-16 3.7E-21 152.6 17.0 195 382-576 41-250 (376)
198 KOG1445 Tumor-specific antigen 99.7 9.8E-17 2.1E-21 164.3 16.2 234 294-527 587-845 (1012)
199 PRK01742 tolB translocation pr 99.7 6E-16 1.3E-20 164.9 22.9 216 282-506 199-426 (429)
200 KOG1963 WD40 repeat protein [G 99.7 4.8E-15 1E-19 158.3 28.7 291 283-577 13-384 (792)
201 KOG0290 Conserved WD40 repeat- 99.7 1.3E-15 2.9E-20 143.4 20.7 241 329-571 45-321 (364)
202 KOG0771 Prolactin regulatory e 99.7 2.1E-15 4.6E-20 149.0 22.3 195 373-569 148-355 (398)
203 KOG1524 WD40 repeat-containing 99.7 3.8E-16 8.2E-21 157.5 16.7 209 298-523 75-283 (737)
204 KOG4227 WD40 repeat protein [G 99.7 1.1E-15 2.5E-20 148.7 19.0 245 323-570 51-324 (609)
205 KOG0644 Uncharacterized conser 99.7 2.7E-17 5.7E-22 173.3 7.8 247 319-576 181-434 (1113)
206 KOG1240 Protein kinase contain 99.7 4.2E-15 9.2E-20 162.8 24.7 256 317-572 1037-1338(1431)
207 KOG1272 WD40-repeat-containing 99.7 9.4E-17 2E-21 159.7 9.0 233 328-567 129-361 (545)
208 KOG1523 Actin-related protein 99.7 7.5E-15 1.6E-19 140.2 21.5 231 327-559 9-269 (361)
209 KOG4497 Uncharacterized conser 99.7 7.2E-15 1.6E-19 140.5 21.2 273 291-569 13-392 (447)
210 PF02239 Cytochrom_D1: Cytochr 99.7 1E-13 2.2E-18 143.7 31.2 286 289-577 39-356 (369)
211 PRK03629 tolB translocation pr 99.7 5.5E-14 1.2E-18 149.6 29.8 234 308-548 179-427 (429)
212 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.5E-20 151.0 15.3 193 290-483 148-354 (398)
213 KOG4497 Uncharacterized conser 99.7 6.3E-14 1.4E-18 134.2 25.5 270 288-561 50-425 (447)
214 KOG2139 WD40 repeat protein [G 99.7 6E-14 1.3E-18 136.0 25.5 277 287-568 99-431 (445)
215 KOG2394 WD40 protein DMR-N9 [G 99.6 1.4E-14 3.1E-19 146.6 20.9 241 289-547 126-383 (636)
216 KOG3881 Uncharacterized conser 99.6 2.5E-14 5.4E-19 140.1 21.4 259 286-549 55-342 (412)
217 KOG2111 Uncharacterized conser 99.6 6E-13 1.3E-17 127.4 30.1 276 288-569 7-323 (346)
218 PRK04922 tolB translocation pr 99.6 7.8E-14 1.7E-18 148.9 27.2 235 308-548 184-432 (433)
219 PRK02889 tolB translocation pr 99.6 5.4E-14 1.2E-18 149.8 25.6 236 308-549 176-425 (427)
220 PRK03629 tolB translocation pr 99.6 1.2E-13 2.6E-18 147.0 27.0 217 284-505 196-427 (429)
221 KOG1517 Guanine nucleotide bin 99.6 5.1E-14 1.1E-18 152.2 23.3 241 329-570 1065-1335(1387)
222 KOG1310 WD40 repeat protein [G 99.6 4E-15 8.7E-20 150.6 13.9 213 362-574 43-309 (758)
223 KOG2139 WD40 repeat protein [G 99.6 8.1E-14 1.8E-18 135.1 22.0 238 330-569 100-384 (445)
224 PRK05137 tolB translocation pr 99.6 4.4E-13 9.6E-18 143.3 30.2 234 308-548 182-432 (435)
225 KOG1354 Serine/threonine prote 99.6 6E-14 1.3E-18 135.1 20.7 276 286-565 25-431 (433)
226 KOG2394 WD40 protein DMR-N9 [G 99.6 2.4E-14 5.1E-19 145.0 17.0 196 295-505 182-384 (636)
227 KOG2111 Uncharacterized conser 99.6 8.8E-13 1.9E-17 126.2 26.7 234 330-571 7-259 (346)
228 KOG3881 Uncharacterized conser 99.6 1.3E-13 2.8E-18 135.1 21.4 243 327-574 54-326 (412)
229 PF02239 Cytochrom_D1: Cytochr 99.6 1.1E-12 2.4E-17 136.0 29.8 273 299-574 6-308 (369)
230 PRK04922 tolB translocation pr 99.6 3.1E-13 6.6E-18 144.4 25.5 217 284-505 201-432 (433)
231 PRK05137 tolB translocation pr 99.6 1.2E-12 2.6E-17 140.0 29.6 216 350-571 182-415 (435)
232 PRK02889 tolB translocation pr 99.6 4.9E-13 1.1E-17 142.5 25.6 218 283-505 192-424 (427)
233 KOG2315 Predicted translation 99.6 2.5E-12 5.5E-17 131.5 28.2 272 286-569 34-391 (566)
234 KOG0322 G-protein beta subunit 99.6 7.6E-14 1.6E-18 130.1 14.7 237 284-525 54-322 (323)
235 PF08662 eIF2A: Eukaryotic tra 99.5 6.7E-13 1.5E-17 125.3 20.5 157 415-578 9-188 (194)
236 KOG0280 Uncharacterized conser 99.5 9.7E-13 2.1E-17 124.6 21.2 262 307-570 45-335 (339)
237 PF10282 Lactonase: Lactonase, 99.5 1E-10 2.2E-15 121.2 38.1 267 301-568 2-322 (345)
238 TIGR02800 propeller_TolB tol-p 99.5 7.1E-12 1.5E-16 133.5 29.2 234 307-546 169-416 (417)
239 KOG1409 Uncharacterized conser 99.5 1.1E-12 2.4E-17 126.6 19.7 248 276-527 14-271 (404)
240 KOG1334 WD40 repeat protein [G 99.5 1.3E-13 2.7E-18 138.4 13.4 258 319-577 133-433 (559)
241 KOG0974 WD-repeat protein WDR6 99.5 8.6E-13 1.9E-17 143.5 19.7 274 287-573 8-293 (967)
242 KOG1354 Serine/threonine prote 99.5 1.1E-12 2.3E-17 126.6 18.1 242 327-571 24-362 (433)
243 PRK00178 tolB translocation pr 99.5 1.7E-11 3.8E-16 131.0 29.8 234 309-548 180-427 (430)
244 PRK04792 tolB translocation pr 99.5 1.1E-11 2.4E-16 132.6 28.2 234 309-548 199-446 (448)
245 PF08662 eIF2A: Eukaryotic tra 99.5 4.2E-12 9E-17 119.9 22.1 155 373-534 9-186 (194)
246 KOG2041 WD40 repeat protein [G 99.5 3.4E-12 7.3E-17 133.1 22.4 281 284-569 12-338 (1189)
247 KOG2321 WD40 repeat protein [G 99.5 3.3E-12 7.1E-17 130.6 21.5 247 326-577 49-311 (703)
248 KOG4547 WD40 repeat-containing 99.5 2.1E-11 4.7E-16 125.7 25.7 188 295-484 2-221 (541)
249 PF10282 Lactonase: Lactonase, 99.5 6.1E-10 1.3E-14 115.3 37.1 261 286-546 36-345 (345)
250 TIGR02800 propeller_TolB tol-p 99.5 3.5E-11 7.5E-16 128.2 27.9 213 350-568 170-397 (417)
251 PRK00178 tolB translocation pr 99.5 2.4E-11 5.1E-16 130.0 26.6 217 284-505 196-427 (430)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.4E-09 3E-14 110.7 36.9 258 308-576 27-338 (352)
253 PRK04792 tolB translocation pr 99.4 3.1E-11 6.7E-16 129.2 25.7 216 285-505 216-446 (448)
254 TIGR03300 assembly_YfgL outer 99.4 2.2E-10 4.8E-15 120.3 31.7 267 298-577 65-347 (377)
255 KOG1064 RAVE (regulator of V-A 99.4 8.9E-13 1.9E-17 149.2 12.7 197 285-493 2207-2408(2439)
256 PRK01029 tolB translocation pr 99.4 1.5E-10 3.3E-15 123.0 29.2 240 308-550 165-426 (428)
257 COG5354 Uncharacterized protei 99.4 2.2E-10 4.9E-15 116.1 27.1 277 287-571 72-398 (561)
258 PRK01029 tolB translocation pr 99.4 1.9E-10 4.2E-15 122.2 28.1 221 350-572 165-407 (428)
259 PF04762 IKI3: IKI3 family; I 99.4 9.1E-10 2E-14 126.2 35.2 284 284-571 73-459 (928)
260 KOG4547 WD40 repeat-containing 99.4 4.1E-11 8.9E-16 123.6 21.7 189 379-570 3-222 (541)
261 TIGR03300 assembly_YfgL outer 99.4 4.1E-10 9E-15 118.3 29.8 255 297-565 104-376 (377)
262 KOG1064 RAVE (regulator of V-A 99.4 4.5E-12 9.8E-17 143.6 13.9 222 325-561 2205-2439(2439)
263 COG4946 Uncharacterized protei 99.4 1.6E-09 3.4E-14 108.9 29.9 274 297-576 331-663 (668)
264 COG5354 Uncharacterized protei 99.3 3.7E-10 8.1E-15 114.5 24.6 278 285-571 31-351 (561)
265 PLN02919 haloacid dehalogenase 99.3 2E-09 4.4E-14 125.6 33.9 239 332-572 571-892 (1057)
266 KOG0974 WD-repeat protein WDR6 99.3 3.4E-11 7.4E-16 131.2 17.0 192 290-484 91-289 (967)
267 KOG0280 Uncharacterized conser 99.3 2.3E-10 5E-15 108.7 19.0 237 285-524 68-331 (339)
268 KOG2314 Translation initiation 99.3 8.1E-10 1.8E-14 113.0 23.7 273 290-569 214-526 (698)
269 PLN02919 haloacid dehalogenase 99.3 6.4E-09 1.4E-13 121.5 34.5 238 291-530 572-892 (1057)
270 KOG0309 Conserved WD40 repeat- 99.3 8.8E-11 1.9E-15 123.2 14.9 282 286-569 24-340 (1081)
271 COG2706 3-carboxymuconate cycl 99.3 4E-08 8.6E-13 96.7 32.2 263 307-570 15-323 (346)
272 KOG4190 Uncharacterized conser 99.2 3.4E-11 7.3E-16 122.4 10.9 279 280-564 729-1032(1034)
273 KOG2314 Translation initiation 99.2 2.4E-09 5.3E-14 109.5 23.8 278 287-569 250-574 (698)
274 COG2706 3-carboxymuconate cycl 99.2 7.2E-08 1.6E-12 94.9 33.0 263 284-547 37-345 (346)
275 KOG1409 Uncharacterized conser 99.2 3.6E-10 7.9E-15 109.4 15.8 250 320-573 16-275 (404)
276 KOG4190 Uncharacterized conser 99.2 4.2E-11 9.2E-16 121.7 9.8 240 321-566 728-986 (1034)
277 PF04762 IKI3: IKI3 family; I 99.2 2.7E-08 5.9E-13 114.2 33.1 278 286-567 21-378 (928)
278 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.2E-08 1.3E-12 98.7 32.0 237 294-535 53-339 (352)
279 PF08450 SGL: SMP-30/Gluconola 99.2 7.8E-08 1.7E-12 94.7 32.0 217 333-557 4-244 (246)
280 KOG2315 Predicted translation 99.2 4.1E-09 8.9E-14 108.3 22.7 248 290-548 129-410 (566)
281 KOG2041 WD40 repeat protein [G 99.2 2.2E-09 4.7E-14 112.6 20.6 251 271-525 56-336 (1189)
282 KOG1832 HIV-1 Vpr-binding prot 99.2 1.8E-11 4E-16 130.3 4.9 263 276-557 1091-1378(1516)
283 COG5170 CDC55 Serine/threonine 99.2 8.3E-10 1.8E-14 105.5 15.6 237 285-524 25-365 (460)
284 KOG1912 WD40 repeat protein [G 99.2 2.4E-09 5.2E-14 113.3 20.5 284 286-571 15-367 (1062)
285 smart00500 SFM Splicing Factor 99.2 3.7E-11 8.1E-16 81.5 4.6 36 148-183 1-36 (44)
286 KOG4532 WD40-like repeat conta 99.2 8.1E-09 1.8E-13 97.1 21.6 231 339-570 83-333 (344)
287 PF08799 PRP4: pre-mRNA proces 99.1 3.5E-11 7.7E-16 74.1 3.1 30 153-182 1-30 (30)
288 PF15492 Nbas_N: Neuroblastoma 99.1 7.7E-08 1.7E-12 92.0 27.0 239 292-577 3-268 (282)
289 KOG1275 PAB-dependent poly(A) 99.1 6.3E-10 1.4E-14 119.6 13.5 272 287-568 55-342 (1118)
290 PRK04043 tolB translocation pr 99.1 3.8E-08 8.2E-13 104.1 26.6 199 288-493 189-409 (419)
291 PF08606 Prp19: Prp19/Pso4-lik 99.1 7.5E-11 1.6E-15 87.4 4.2 57 115-185 11-69 (70)
292 PRK11138 outer membrane biogen 99.1 8.7E-08 1.9E-12 101.2 29.3 270 298-578 69-363 (394)
293 PF13360 PQQ_2: PQQ-like domai 99.1 1.2E-07 2.6E-12 92.6 28.2 219 307-533 2-237 (238)
294 PRK11138 outer membrane biogen 99.1 6.5E-08 1.4E-12 102.2 28.1 257 298-567 120-393 (394)
295 COG5170 CDC55 Serine/threonine 99.1 2.7E-09 5.8E-14 102.1 15.0 240 327-569 25-368 (460)
296 PF08450 SGL: SMP-30/Gluconola 99.1 5.3E-07 1.1E-11 88.8 31.7 216 291-514 4-244 (246)
297 KOG4532 WD40-like repeat conta 99.1 1.7E-08 3.8E-13 94.9 19.5 212 297-508 83-315 (344)
298 PRK04043 tolB translocation pr 99.0 2.2E-07 4.8E-12 98.4 29.4 192 330-527 189-401 (419)
299 KOG4714 Nucleoporin [Nuclear s 99.0 3.2E-09 6.9E-14 99.4 12.5 251 289-566 39-316 (319)
300 PF13360 PQQ_2: PQQ-like domai 99.0 1.9E-07 4.1E-12 91.2 25.0 216 349-574 2-236 (238)
301 KOG1912 WD40 repeat protein [G 99.0 5.4E-08 1.2E-12 103.3 21.4 241 327-570 14-306 (1062)
302 KOG3914 WD repeat protein WDR4 99.0 1E-08 2.2E-13 101.7 15.0 159 333-493 67-233 (390)
303 KOG3914 WD repeat protein WDR4 98.9 2.6E-08 5.6E-13 98.9 15.8 159 290-450 66-232 (390)
304 COG4946 Uncharacterized protei 98.9 1.8E-06 3.9E-11 87.4 27.6 214 337-557 275-507 (668)
305 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.5E-13 107.7 12.5 239 289-527 70-340 (1081)
306 KOG2695 WD40 repeat protein [G 98.9 5.5E-09 1.2E-13 101.4 9.3 160 385-547 228-401 (425)
307 KOG0882 Cyclophilin-related pe 98.9 4E-08 8.6E-13 98.5 13.9 248 285-535 8-314 (558)
308 KOG0882 Cyclophilin-related pe 98.8 3.7E-08 8.1E-13 98.7 13.3 244 327-575 8-312 (558)
309 PF07433 DUF1513: Protein of u 98.8 6.7E-06 1.5E-10 81.2 28.5 228 330-563 6-280 (305)
310 KOG2695 WD40 repeat protein [G 98.8 1.2E-08 2.5E-13 99.2 8.5 151 344-495 228-388 (425)
311 KOG2066 Vacuolar assembly/sort 98.8 4.3E-07 9.4E-12 97.4 20.6 181 329-526 40-233 (846)
312 cd00216 PQQ_DH Dehydrogenases 98.8 3.7E-06 8E-11 91.2 28.3 271 298-578 61-434 (488)
313 PF00930 DPPIV_N: Dipeptidyl p 98.8 3.1E-06 6.8E-11 87.9 26.6 260 295-557 1-346 (353)
314 PF07433 DUF1513: Protein of u 98.8 1E-05 2.2E-10 80.0 28.2 224 291-521 9-280 (305)
315 KOG2114 Vacuolar assembly/sort 98.8 1.3E-06 2.8E-11 94.4 23.7 202 293-496 30-257 (933)
316 KOG1645 RING-finger-containing 98.8 7.4E-07 1.6E-11 88.5 20.0 254 310-569 175-462 (463)
317 KOG4649 PQQ (pyrrolo-quinoline 98.8 6.3E-06 1.4E-10 77.8 25.0 262 298-570 63-353 (354)
318 KOG1920 IkappaB kinase complex 98.8 1.2E-06 2.7E-11 97.8 23.6 234 287-524 69-363 (1265)
319 KOG1920 IkappaB kinase complex 98.7 7.1E-06 1.5E-10 92.0 28.4 236 328-567 68-364 (1265)
320 KOG2114 Vacuolar assembly/sort 98.7 1.2E-06 2.7E-11 94.6 21.6 206 335-542 30-260 (933)
321 KOG1832 HIV-1 Vpr-binding prot 98.7 4.2E-09 9.2E-14 112.7 2.3 219 318-554 1091-1317(1516)
322 KOG4714 Nucleoporin [Nuclear s 98.7 5.5E-08 1.2E-12 91.3 8.5 148 422-569 100-255 (319)
323 PF15492 Nbas_N: Neuroblastoma 98.7 2.4E-06 5.3E-11 81.9 19.7 196 288-494 45-270 (282)
324 cd00216 PQQ_DH Dehydrogenases 98.6 6E-05 1.3E-09 81.8 29.5 228 299-536 111-434 (488)
325 PRK02888 nitrous-oxide reducta 98.5 5.2E-05 1.1E-09 81.6 26.7 252 296-557 139-450 (635)
326 KOG2066 Vacuolar assembly/sort 98.5 2.1E-06 4.5E-11 92.3 15.9 182 370-569 40-234 (846)
327 KOG1645 RING-finger-containing 98.5 3.6E-06 7.7E-11 83.8 16.1 240 282-526 189-461 (463)
328 KOG1275 PAB-dependent poly(A) 98.5 2.5E-06 5.4E-11 92.7 16.0 180 297-481 146-340 (1118)
329 KOG3621 WD40 repeat-containing 98.5 1.9E-05 4.1E-10 84.1 22.1 272 288-570 35-355 (726)
330 PF00400 WD40: WD domain, G-be 98.5 4.3E-07 9.2E-12 61.5 6.5 39 528-566 1-39 (39)
331 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00028 6.1E-09 74.6 30.4 204 292-505 34-269 (410)
332 KOG3617 WD40 and TPR repeat-co 98.5 7.9E-06 1.7E-10 88.0 18.0 107 291-399 20-131 (1416)
333 KOG3617 WD40 and TPR repeat-co 98.4 9E-06 2E-10 87.5 17.9 110 331-441 18-131 (1416)
334 PRK02888 nitrous-oxide reducta 98.4 2.3E-05 5E-10 84.2 21.1 257 301-569 69-405 (635)
335 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00046 1E-08 65.5 26.5 186 298-491 23-214 (354)
336 PF06433 Me-amine-dh_H: Methyl 98.4 0.00059 1.3E-08 68.5 28.5 264 308-577 17-329 (342)
337 PF06433 Me-amine-dh_H: Methyl 98.4 0.00075 1.6E-08 67.7 28.7 244 290-536 39-330 (342)
338 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.00081 1.7E-08 73.5 31.8 277 298-578 69-500 (527)
339 PF08596 Lgl_C: Lethal giant l 98.4 0.00016 3.6E-09 75.5 25.0 270 288-567 3-334 (395)
340 PF00400 WD40: WD domain, G-be 98.4 1.4E-06 3.1E-11 58.9 6.5 39 318-356 1-39 (39)
341 PF04053 Coatomer_WDAD: Coatom 98.4 0.00019 4.1E-09 76.1 25.4 221 326-568 30-262 (443)
342 PF02897 Peptidase_S9_N: Proly 98.3 0.0012 2.5E-08 70.3 30.3 240 288-531 125-409 (414)
343 COG3391 Uncharacterized conser 98.3 0.0034 7.3E-08 66.0 33.1 261 310-574 13-289 (381)
344 PF06977 SdiA-regulated: SdiA- 98.3 0.00071 1.5E-08 66.0 25.5 199 364-565 16-247 (248)
345 COG3391 Uncharacterized conser 98.2 0.0027 5.8E-08 66.7 31.0 259 288-548 32-308 (381)
346 PF00780 CNH: CNH domain; Int 98.2 0.00089 1.9E-08 66.9 26.1 226 338-578 5-265 (275)
347 KOG1008 Uncharacterized conser 98.2 6.1E-07 1.3E-11 94.0 2.9 196 328-526 56-275 (783)
348 PF04053 Coatomer_WDAD: Coatom 98.2 0.00037 8.1E-09 73.9 23.4 218 286-525 32-261 (443)
349 PF00780 CNH: CNH domain; Int 98.2 0.0021 4.5E-08 64.3 27.7 227 296-538 5-267 (275)
350 KOG3621 WD40 repeat-containing 98.2 1.5E-05 3.2E-10 84.9 12.4 198 369-572 33-248 (726)
351 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0015 3.3E-08 69.1 27.2 192 351-551 62-272 (410)
352 PF11768 DUF3312: Protein of u 98.2 0.0034 7.3E-08 66.4 28.8 112 456-570 208-331 (545)
353 PF02897 Peptidase_S9_N: Proly 98.2 0.0063 1.4E-07 64.7 32.2 239 331-572 126-408 (414)
354 PF11768 DUF3312: Protein of u 98.2 0.00084 1.8E-08 70.9 24.3 113 371-485 207-331 (545)
355 PF06977 SdiA-regulated: SdiA- 98.1 0.0014 3E-08 63.9 24.4 198 323-523 16-247 (248)
356 KOG1008 Uncharacterized conser 98.1 7.2E-07 1.6E-11 93.4 1.5 196 372-570 59-277 (783)
357 PF14583 Pectate_lyase22: Olig 98.1 0.007 1.5E-07 62.0 29.3 273 292-568 41-381 (386)
358 COG0823 TolB Periplasmic compo 98.1 0.00051 1.1E-08 72.6 21.5 192 318-512 182-386 (425)
359 COG3386 Gluconolactonase [Carb 98.1 0.0026 5.6E-08 64.2 25.6 219 334-557 30-274 (307)
360 PF08596 Lgl_C: Lethal giant l 98.0 0.0015 3.3E-08 68.4 23.8 205 371-577 3-299 (395)
361 COG0823 TolB Periplasmic compo 98.0 0.00035 7.5E-09 73.9 18.8 203 350-556 173-387 (425)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.01 2.2E-07 65.0 30.8 238 298-537 120-501 (527)
363 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0023 5E-08 66.5 23.6 220 337-558 1-301 (353)
364 PF03178 CPSF_A: CPSF A subuni 97.9 0.0032 6.9E-08 64.6 23.2 210 308-523 2-262 (321)
365 KOG1897 Damage-specific DNA bi 97.9 0.016 3.4E-07 64.7 29.0 279 287-570 584-900 (1096)
366 PF08553 VID27: VID27 cytoplas 97.9 0.00084 1.8E-08 75.0 19.3 141 298-440 493-646 (794)
367 COG3386 Gluconolactonase [Carb 97.8 0.014 3.1E-07 58.9 24.4 218 293-516 31-276 (307)
368 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.046 1E-06 57.3 28.4 89 291-379 6-118 (415)
369 KOG2444 WD40 repeat protein [G 97.7 3.5E-05 7.5E-10 71.9 4.8 144 425-571 32-180 (238)
370 PF03178 CPSF_A: CPSF A subuni 97.7 0.0082 1.8E-07 61.5 22.7 178 298-480 42-262 (321)
371 PF08553 VID27: VID27 cytoplas 97.6 0.0012 2.5E-08 73.9 15.6 144 422-568 492-647 (794)
372 PF05096 Glu_cyclase_2: Glutam 97.6 0.069 1.5E-06 52.1 25.8 180 372-557 47-249 (264)
373 KOG2395 Protein involved in va 97.6 0.0028 6.1E-08 65.9 16.5 143 422-568 344-500 (644)
374 PHA02713 hypothetical protein; 97.6 0.0071 1.5E-07 66.7 20.9 185 380-571 303-536 (557)
375 PRK13616 lipoprotein LpqB; Pro 97.6 0.0057 1.2E-07 67.5 19.6 180 287-475 350-560 (591)
376 PF14870 PSII_BNR: Photosynthe 97.5 0.12 2.7E-06 51.9 29.8 270 284-565 14-301 (302)
377 PHA02713 hypothetical protein; 97.5 0.0079 1.7E-07 66.4 20.0 196 339-538 303-545 (557)
378 KOG4441 Proteins containing BT 97.5 0.0095 2.1E-07 65.7 20.2 228 295-527 282-547 (571)
379 PRK10115 protease 2; Provision 97.5 0.32 6.9E-06 55.2 34.4 238 287-529 127-397 (686)
380 PRK13616 lipoprotein LpqB; Pro 97.5 0.021 4.5E-07 63.1 22.5 206 307-522 328-564 (591)
381 KOG4499 Ca2+-binding protein R 97.4 0.04 8.7E-07 51.9 20.0 205 341-548 28-263 (310)
382 KOG2079 Vacuolar assembly/sort 97.4 0.002 4.4E-08 72.1 13.5 100 339-440 98-202 (1206)
383 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.0099 2.2E-07 49.7 14.5 101 456-564 2-110 (111)
384 TIGR03074 PQQ_membr_DH membran 97.4 0.046 9.9E-07 62.1 24.5 195 381-576 194-485 (764)
385 COG3490 Uncharacterized protei 97.4 0.13 2.7E-06 50.1 23.4 235 330-568 69-348 (366)
386 KOG4499 Ca2+-binding protein R 97.3 0.079 1.7E-06 50.0 21.1 212 298-513 27-271 (310)
387 COG5276 Uncharacterized conser 97.3 0.18 3.9E-06 49.3 27.6 270 289-568 89-369 (370)
388 smart00320 WD40 WD40 repeats. 97.3 0.00073 1.6E-08 43.7 5.7 39 528-566 2-40 (40)
389 KOG4640 Anaphase-promoting com 97.3 0.0012 2.5E-08 70.0 9.6 94 411-505 20-115 (665)
390 KOG1897 Damage-specific DNA bi 97.3 0.36 7.7E-06 54.5 28.8 280 282-570 302-615 (1096)
391 COG3204 Uncharacterized protei 97.3 0.065 1.4E-06 52.4 20.6 167 325-492 82-271 (316)
392 KOG4640 Anaphase-promoting com 97.2 0.0014 3.1E-08 69.4 9.6 93 328-420 20-114 (665)
393 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.019 4E-07 48.1 14.2 102 414-522 2-110 (111)
394 KOG4441 Proteins containing BT 97.2 0.028 6E-07 62.1 20.1 223 340-570 285-548 (571)
395 PF05096 Glu_cyclase_2: Glutam 97.2 0.25 5.4E-06 48.3 24.3 181 330-515 46-250 (264)
396 KOG2395 Protein involved in va 97.2 0.0066 1.4E-07 63.3 13.5 142 297-441 344-500 (644)
397 PRK10115 protease 2; Provision 97.2 0.7 1.5E-05 52.5 32.5 236 329-571 127-397 (686)
398 smart00320 WD40 WD40 repeats. 97.1 0.0017 3.6E-08 41.9 5.9 38 319-356 3-40 (40)
399 COG3204 Uncharacterized protei 97.1 0.16 3.4E-06 49.9 21.0 198 366-565 82-309 (316)
400 PRK13684 Ycf48-like protein; P 97.1 0.48 1E-05 48.8 30.6 269 285-567 44-330 (334)
401 TIGR03074 PQQ_membr_DH membran 97.0 0.24 5.3E-06 56.3 25.3 193 298-491 194-485 (764)
402 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.6 1.3E-05 49.2 34.8 265 297-569 36-361 (418)
403 TIGR02604 Piru_Ver_Nterm putat 97.0 0.62 1.3E-05 48.7 26.2 142 329-473 14-203 (367)
404 KOG2079 Vacuolar assembly/sort 96.9 0.013 2.7E-07 66.0 13.7 100 381-482 99-202 (1206)
405 KOG2444 WD40 repeat protein [G 96.9 0.0012 2.5E-08 61.9 4.7 104 380-483 69-177 (238)
406 KOG1924 RhoA GTPase effector D 96.9 0.0021 4.6E-08 69.4 6.9 12 298-309 828-839 (1102)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.44 9.6E-06 50.1 23.4 82 496-578 308-408 (415)
408 COG3490 Uncharacterized protei 96.8 0.39 8.4E-06 46.9 20.6 229 291-524 72-346 (366)
409 PHA03098 kelch-like protein; P 96.8 0.052 1.1E-06 59.8 17.4 183 380-570 294-513 (534)
410 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.69 1.5E-05 45.8 25.9 215 289-505 25-307 (336)
411 PF14583 Pectate_lyase22: Olig 96.7 0.88 1.9E-05 46.9 29.6 243 314-559 16-303 (386)
412 PF14870 PSII_BNR: Photosynthe 96.6 0.9 2E-05 45.8 27.6 226 289-523 64-301 (302)
413 PF10647 Gmad1: Lipoprotein Lp 96.6 0.64 1.4E-05 45.8 22.1 144 330-475 25-187 (253)
414 PF05694 SBP56: 56kDa selenium 96.6 1.2 2.6E-05 46.5 26.6 219 339-557 86-392 (461)
415 PF05694 SBP56: 56kDa selenium 96.6 0.41 8.9E-06 49.8 20.5 192 380-571 86-345 (461)
416 PHA03098 kelch-like protein; P 96.5 0.14 3E-06 56.4 18.7 185 339-529 294-514 (534)
417 PF10168 Nup88: Nuclear pore c 96.5 0.69 1.5E-05 52.3 23.4 92 329-443 85-181 (717)
418 PF07995 GSDH: Glucose / Sorbo 96.4 1.4 3.1E-05 45.2 23.9 228 289-521 4-330 (331)
419 COG1520 FOG: WD40-like repeat 96.4 1.6 3.5E-05 45.6 30.0 193 299-494 69-279 (370)
420 PF07995 GSDH: Glucose / Sorbo 96.4 1.5 3.3E-05 45.0 28.9 231 330-563 3-330 (331)
421 KOG1916 Nuclear protein, conta 96.3 0.0014 2.9E-08 72.0 1.2 186 350-567 153-373 (1283)
422 PF10647 Gmad1: Lipoprotein Lp 96.3 1.2 2.7E-05 43.7 23.0 148 371-522 25-192 (253)
423 PRK13684 Ycf48-like protein; P 96.3 1.7 3.7E-05 44.7 25.1 173 345-524 147-329 (334)
424 PHA02790 Kelch-like protein; P 96.2 0.29 6.2E-06 53.2 18.0 179 381-570 272-472 (480)
425 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.7 3.6E-05 43.2 26.0 218 330-548 24-307 (336)
426 KOG2280 Vacuolar assembly/sort 96.1 0.77 1.7E-05 50.5 20.0 193 307-505 63-269 (829)
427 PF10395 Utp8: Utp8 family; I 95.9 3.8 8.2E-05 45.4 25.3 237 335-577 34-314 (670)
428 KOG2280 Vacuolar assembly/sort 95.9 0.56 1.2E-05 51.5 17.9 182 349-535 63-255 (829)
429 PF05935 Arylsulfotrans: Aryls 95.8 1 2.2E-05 48.8 20.4 143 348-494 126-312 (477)
430 KOG3630 Nuclear pore complex, 95.8 0.11 2.5E-06 59.0 12.8 141 371-513 102-260 (1405)
431 PF15390 DUF4613: Domain of un 95.8 0.35 7.5E-06 51.8 15.5 147 329-482 20-185 (671)
432 PF12894 Apc4_WD40: Anaphase-p 95.6 0.034 7.3E-07 39.0 5.2 34 286-320 11-44 (47)
433 COG3292 Predicted periplasmic 95.6 1.2 2.7E-05 47.5 18.7 269 286-564 164-443 (671)
434 PHA02790 Kelch-like protein; P 95.6 0.58 1.3E-05 50.8 17.3 170 297-474 271-456 (480)
435 PF12894 Apc4_WD40: Anaphase-p 95.6 0.043 9.4E-07 38.5 5.6 35 327-361 10-44 (47)
436 PF10395 Utp8: Utp8 family; I 95.6 4.7 0.0001 44.6 23.7 238 291-535 32-314 (670)
437 PF10214 Rrn6: RNA polymerase 95.5 5.7 0.00012 45.8 25.8 114 412-527 146-277 (765)
438 TIGR02604 Piru_Ver_Nterm putat 95.4 1 2.2E-05 47.1 17.7 141 287-430 14-202 (367)
439 PF10168 Nup88: Nuclear pore c 95.2 0.46 9.9E-06 53.7 15.3 94 370-485 85-181 (717)
440 PF12234 Rav1p_C: RAVE protein 95.2 0.75 1.6E-05 50.7 16.4 115 452-568 28-156 (631)
441 COG3823 Glutamine cyclotransfe 95.2 0.95 2.1E-05 42.2 14.4 172 380-556 55-247 (262)
442 KOG1916 Nuclear protein, conta 95.1 0.0036 7.9E-08 68.8 -1.4 75 307-381 152-236 (1283)
443 KOG3630 Nuclear pore complex, 95.1 0.2 4.3E-06 57.1 11.8 141 330-471 102-261 (1405)
444 PLN00033 photosystem II stabil 95.0 5.7 0.00012 41.8 33.0 144 414-565 241-396 (398)
445 PLN02153 epithiospecifier prot 95.0 5.1 0.00011 41.2 24.3 145 380-529 85-287 (341)
446 TIGR03548 mutarot_permut cycli 94.9 4.6 0.0001 41.2 20.9 105 380-486 72-197 (323)
447 PF14727 PHTB1_N: PTHB1 N-term 94.9 6.2 0.00013 41.7 29.1 142 340-482 37-203 (418)
448 PF12234 Rav1p_C: RAVE protein 94.9 1.1 2.4E-05 49.4 16.6 112 369-482 29-155 (631)
449 PF15390 DUF4613: Domain of un 94.8 0.75 1.6E-05 49.3 14.5 148 287-441 20-186 (671)
450 PF02333 Phytase: Phytase; In 94.8 6.1 0.00013 41.0 24.2 193 339-534 67-299 (381)
451 PF05935 Arylsulfotrans: Aryls 94.6 4.6 9.9E-05 43.8 20.6 145 389-538 126-313 (477)
452 KOG2808 U5 snRNP-associated RN 94.6 0.05 1.1E-06 53.3 4.9 31 153-183 80-110 (341)
453 KOG3616 Selective LIM binding 94.4 1.1 2.4E-05 49.1 14.6 73 286-363 14-88 (1636)
454 PF14761 HPS3_N: Hermansky-Pud 94.4 4.5 9.8E-05 38.2 17.0 139 424-568 29-214 (215)
455 PRK14131 N-acetylneuraminic ac 94.3 7.9 0.00017 40.5 21.6 53 380-432 84-149 (376)
456 PLN00033 photosystem II stabil 94.3 8.3 0.00018 40.6 27.6 146 372-523 241-396 (398)
457 COG5167 VID27 Protein involved 94.1 2.5 5.5E-05 44.6 16.0 136 385-526 484-632 (776)
458 PLN02193 nitrile-specifier pro 94.0 11 0.00023 40.9 22.5 146 380-530 228-414 (470)
459 PLN02153 epithiospecifier prot 94.0 8.5 0.00018 39.6 22.2 185 297-486 32-287 (341)
460 COG5167 VID27 Protein involved 93.8 1.4 2.9E-05 46.5 13.5 143 421-568 477-632 (776)
461 KOG2247 WD40 repeat-containing 93.8 0.0082 1.8E-07 62.1 -2.4 147 333-481 39-186 (615)
462 COG1520 FOG: WD40-like repeat 93.8 9.9 0.00021 39.6 30.0 191 341-536 69-278 (370)
463 KOG2377 Uncharacterized conser 93.7 6.8 0.00015 40.9 18.0 151 290-443 26-187 (657)
464 TIGR03547 muta_rot_YjhT mutatr 93.6 9.8 0.00021 39.2 22.2 53 380-432 63-128 (346)
465 TIGR03548 mutarot_permut cycli 93.6 9.6 0.00021 38.9 21.1 65 380-444 123-197 (323)
466 KOG1983 Tomosyn and related SN 93.6 2.3 5.1E-05 50.1 16.8 223 329-572 36-268 (993)
467 PF08728 CRT10: CRT10; InterP 93.5 2 4.4E-05 47.9 15.3 103 380-482 113-245 (717)
468 PF08801 Nucleoporin_N: Nup133 93.5 4.6 0.0001 43.0 18.0 32 454-485 190-221 (422)
469 smart00036 CNH Domain found in 93.4 9.8 0.00021 38.5 29.4 230 297-536 12-280 (302)
470 PRK05560 DNA gyrase subunit A; 93.3 20 0.00042 41.6 25.3 228 338-568 496-772 (805)
471 COG3823 Glutamine cyclotransfe 92.9 5.2 0.00011 37.5 14.3 171 340-514 56-247 (262)
472 PRK14131 N-acetylneuraminic ac 92.8 14 0.00031 38.6 22.7 40 391-431 189-230 (376)
473 TIGR01063 gyrA DNA gyrase, A s 92.7 23 0.0005 41.0 24.7 227 338-568 494-769 (800)
474 PF03022 MRJP: Major royal jel 92.6 12 0.00027 37.5 21.0 163 392-556 35-253 (287)
475 PLN02193 nitrile-specifier pro 92.6 18 0.00038 39.2 22.8 147 339-487 228-414 (470)
476 PF08801 Nucleoporin_N: Nup133 92.6 3.3 7.2E-05 44.1 15.2 34 538-571 189-222 (422)
477 PF14781 BBS2_N: Ciliary BBSom 92.6 4.3 9.3E-05 35.3 12.7 113 375-491 4-133 (136)
478 COG5290 IkappaB kinase complex 92.6 3.2 6.8E-05 46.1 14.4 215 327-551 111-349 (1243)
479 KOG2391 Vacuolar sorting prote 92.5 2.8 6.2E-05 41.8 13.0 14 174-187 254-267 (365)
480 KOG1983 Tomosyn and related SN 92.4 6.6 0.00014 46.4 18.3 39 284-322 33-71 (993)
481 PF12768 Rax2: Cortical protei 92.4 8.7 0.00019 38.3 16.6 154 391-545 16-208 (281)
482 COG4590 ABC-type uncharacteriz 92.3 0.79 1.7E-05 47.4 9.1 231 339-573 126-391 (733)
483 TIGR03547 muta_rot_YjhT mutatr 92.2 16 0.00034 37.6 22.0 41 391-432 168-210 (346)
484 PF08728 CRT10: CRT10; InterP 92.1 6.2 0.00013 44.2 16.6 110 456-567 103-245 (717)
485 COG4257 Vgb Streptogramin lyas 92.1 13 0.00028 36.5 23.3 231 286-528 61-307 (353)
486 COG5276 Uncharacterized conser 92.1 14 0.00029 36.7 24.3 153 368-529 85-244 (370)
487 KOG4460 Nuclear pore complex, 91.9 17 0.00036 38.9 18.3 100 288-408 105-207 (741)
488 PF13449 Phytase-like: Esteras 91.9 16 0.00035 37.3 23.2 144 285-428 18-231 (326)
489 PF14781 BBS2_N: Ciliary BBSom 91.9 8 0.00017 33.7 14.2 114 417-534 4-133 (136)
490 KOG4460 Nuclear pore complex, 91.6 3.4 7.4E-05 43.8 13.0 27 371-397 105-131 (741)
491 KOG2006 WD40 repeat protein [G 91.2 2.3 4.9E-05 48.6 12.1 71 289-359 151-226 (1023)
492 KOG2247 WD40 repeat-containing 91.2 0.027 5.8E-07 58.5 -2.6 142 415-560 38-180 (615)
493 COG5290 IkappaB kinase complex 91.0 5.6 0.00012 44.3 14.3 90 373-464 250-347 (1243)
494 COG1506 DAP2 Dipeptidyl aminop 90.8 33 0.00071 38.6 25.2 144 324-472 55-234 (620)
495 COG1506 DAP2 Dipeptidyl aminop 90.7 33 0.00072 38.6 26.3 279 282-569 55-385 (620)
496 PF14761 HPS3_N: Hermansky-Pud 90.7 14 0.0003 35.0 15.0 101 382-485 29-165 (215)
497 PF10214 Rrn6: RNA polymerase 90.6 39 0.00084 39.1 28.6 156 326-484 77-277 (765)
498 KOG2377 Uncharacterized conser 90.3 4.9 0.00011 42.0 12.5 103 451-556 64-171 (657)
499 PRK05560 DNA gyrase subunit A; 90.2 42 0.0009 39.0 26.9 251 293-549 493-792 (805)
500 KOG1923 Rac1 GTPase effector F 90.0 2.9 6.3E-05 46.2 11.1 125 8-134 276-408 (830)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-82 Score=617.18 Aligned_cols=442 Identities=55% Similarity=0.899 Sum_probs=409.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCeEecCCchhhhhHHHHHHHHhcccchhHHH
Q 008050 114 EYEISEESRQVRERQEKAKQDLLMKRRAAVLAVPTNDMAVRARLRRLGEPITFFGEREMERRDRLRMLMAKLDSEGQLDR 193 (579)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~d~~v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l~~~~~~~~~~~ 193 (579)
..+..+.......++++++++|+.+||++.+.+||+|.+||..||+||||||+|||++++||+||+++|.....+
T Consensus 14 ~~~~~e~~~q~~~~~a~~l~e~e~r~ra~~l~vpteD~evr~~Lr~l~ePi~~fgE~~~~RR~RL~~lL~~~~~~----- 88 (459)
T KOG0272|consen 14 SDEQSEGSTQNERRQAALLAEFERRRRARLLKVPTEDSEVRSPLRALKEPITLFGEDALARRQRLRELLSVASED----- 88 (459)
T ss_pred chhhhhhhhhhHHHHHHHHHHhhHHhhHHHhcCCccHHHHHHHHHHhCCCCcccCCCHHHHHHHHHHHHHHhhHh-----
Confidence 344455555656789999999999999999999999999999999999999999999999999999999854322
Q ss_pred HHHhhHHHHHHhhccCcchhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHhhhc
Q 008050 194 LMKALEEEEAAATATGADVEEEMLQYPFYTEGSKALLDARIDIAKYSIAKAAKRLQQAQRRRDNPDESIDDEIDYALKKV 273 (579)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~i~~~s~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (579)
+.+...+++.. . +++|..+++||++|+.+|..+|++|+.||+++++.||++++++++.|+.....+....++.+
T Consensus 89 l~~~~~~d~~~-----k-~~~e~~~~~~y~~gp~eL~~AR~~ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~ 162 (459)
T KOG0272|consen 89 LLKDKLEDEVN-----K-KEDEEDESTWYHEGPVELRVARLWIANYSLERAKLRLQKARERREIPDTEKALSRKEALKHL 162 (459)
T ss_pred hhhcccccccc-----c-hhhhhcccceeccCCHHHHHHHHHHHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHh
Confidence 11111111111 1 11333456899999999999999999999999999999999999999998888888999999
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccC--CCEEEEEeCCCc
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPV--SNHVATSSADRT 351 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~--~~~l~s~s~dg~ 351 (579)
.++.+.+++.|.+++|..|.||.|++.|+||+++|.++||+..++..+.+|.+|...|.++.|+|. +..|++|+.||+
T Consensus 163 ~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 163 QSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred hhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999997 568999999999
Q ss_pred EEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 352 ARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430 (579)
Q Consensus 352 I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~ 430 (579)
+++|++++ ..+..+.+|..+|..++|||+|++|+++++|.++++||++++..+..+.||...|++++|++||.++++||
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 99999877 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 431 LDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 431 ~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
.|..-+|||+|+|++++.+.+|.++|.+|+|+|||+.|+||+.|++++|||++..+.++++.+|.+.|+.|+|+|..|++
T Consensus 323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
|+++++|++++||...++.+++++.||+++|.++++++|+++|+|++.|++|++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999996
No 2
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.3e-47 Score=371.25 Aligned_cols=418 Identities=27% Similarity=0.432 Sum_probs=336.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHH--HHHHHHhcCCCeEecCCchhhhhHHHHHHHHhcccchhHH
Q 008050 115 YEISEESRQVRERQEKAKQDLLMKRRAAVLAVPTNDMA--VRARLRRLGEPITFFGEREMERRDRLRMLMAKLDSEGQLD 192 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~d~~--v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l~~~~~~~~~~ 192 (579)
-.|++||++.+++.|+||+||..+||||+++||++|++ |++||. ++|+++|++|+++.......
T Consensus 74 ~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~--------------kE~~eareaLa~~~~qa~a~ 139 (506)
T KOG0289|consen 74 KTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLT--------------KERDEAREALAKLSPQAGAI 139 (506)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHhhcCcccccc
Confidence 45788999999999999999999999999999999999 889997 58999999999875432211
Q ss_pred H--HHHhhHHHHHHhhccCcchhhhhccccccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCchHHHH
Q 008050 193 R--LMKALEEEEAAATATGADVEEEMLQYPFYTEGS-KALLDARIDIAKYSIAKAAKRLQQAQRRR--DNPDESIDDEID 267 (579)
Q Consensus 193 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~r~~i~~~s~~~~~~rl~~~~~~~--~~~~~~~~~~~~ 267 (579)
. ............-++++. ++ .+|. .+++.. +....+.|.+.|+++ +.+......+..
T Consensus 140 ~peav~~~~~~s~~~va~ge~--~d-------~~g~s~~i~~~--------l~~~aq~ls~~rKkrg~k~p~~la~~d~~ 202 (506)
T KOG0289|consen 140 VPEAVPSLAQSSVVGVAAGES--ED-------QPGLSPEIIQK--------LEDKAQVLSQERKKRGKKLPEKLATTDEL 202 (506)
T ss_pred cccccccccccchhhhhcCCc--cc-------cccCCHHHHHH--------HHHHHHHHHHHhhhccccCCcccccHHHH
Confidence 0 000000000000000010 10 1222 233322 334555667777776 666666655555
Q ss_pred HHhhhcceEE-eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE
Q 008050 268 YALKKVESLY-LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS 346 (579)
Q Consensus 268 ~~~~~~~~~~-l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~ 346 (579)
..+.+..+-. ++... ...|.++...+..+.+++|+.|..+.++|....+.+..++||...|+.+.|+++...++++
T Consensus 203 ~~~~q~ash~gLH~t~---~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 203 SCLLQVASHTGLHSTS---TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred HHHHhcCCCcceeccC---CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeec
Confidence 5444444433 44333 4578888888888999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec--CCCCeEEEEEcCCC
Q 008050 347 SADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG--HSRSVYGIAFHPDG 423 (579)
Q Consensus 347 s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~--~~~~V~~l~~spdg 423 (579)
+.|..|+||... .........|..+|+.+..||+|.||++++.||+|.+.|++++..+..... ..-.+++.+|||||
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 999999999943 345666788999999999999999999999999999999999988776543 23458999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-CCeEEEE
Q 008050 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-NLISQVK 502 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-~~V~~v~ 502 (579)
.+|.+|..||.|+|||+.++..+..|.+|.++|..|+|+.||+||++++.|+.|++||+|+.+...++.... ..+.++.
T Consensus 360 Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999998888887543 4689999
Q ss_pred EeeCCCeEEEEEECCCEEEEEE--CCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWS--GRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd--~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
|+.. |.+|+.++.|=.|++++ .++|.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 440 fD~S-Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 440 FDQS-GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EcCC-CCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9985 88898888876666666 3478899999999999999999999999999999999999875
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-47 Score=369.06 Aligned_cols=296 Identities=28% Similarity=0.500 Sum_probs=274.8
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
....+..||..+|.|+.|+|+|..|++|+.|.++++||+.+.....+.++|...|.|++|+|||+.|++|+.||.|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCCeeEEEecccCCeEEEEEec-----CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 008050 357 --TDGSLLNTFQGHLDRLARMAFHP-----SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC 429 (579)
Q Consensus 357 --~~~~~~~~~~~h~~~I~~l~~sp-----~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg 429 (579)
..+.....+.+|...|++++|.| ..++|++++.||+++|||+..+.++....+|..+|+|+.|--+| ++++|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 33456678999999999999987 45799999999999999999999999999999999999998766 99999
Q ss_pred eCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEc-----------CCCC-------------------------EEEEEeC
Q 008050 430 GLDALARVWDLRTGRSILALEGHVKPVLGISFS-----------PNGY-------------------------HLATGGE 473 (579)
Q Consensus 430 ~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~s-----------p~g~-------------------------~l~tgs~ 473 (579)
+.|++|++|+...|+++..+++|...|+.++.+ +.++ .|++|+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999877 2233 4999999
Q ss_pred CCcEEEEECCC-CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCE
Q 008050 474 DNTCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS 552 (579)
Q Consensus 474 Dg~I~iwDl~~-~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 552 (579)
|+++.+|+-.. .+++..+.+|...|+.+.|+|+ +.++++++.|..|++|+.++|+.+.+|++|-+.|..++|+.|.++
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCC-ccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 99999999654 4588889999999999999997 899999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEcCCCCccc
Q 008050 553 IATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 553 L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
|++|+.|.++++|++++++...
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred EEEcCCCceEEEEEeeeeeecc
Confidence 9999999999999999877554
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-44 Score=334.68 Aligned_cols=290 Identities=29% Similarity=0.491 Sum_probs=272.3
Q ss_pred eEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
.+....++.||...|.++.|++|+++|++++.||.+.|||.-+..+.+.+.-....|..++|+|.|+++++|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34556789999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EeCCC-------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEE
Q 008050 355 WNTDG-------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLA 426 (579)
Q Consensus 355 wd~~~-------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l 426 (579)
|++.. .....+.+|.+.+.++.|.. ...|++++.|.+..+||+++++.+..+.+|.+.|.+++++| +++.+
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 99653 34567899999999999997 45799999999999999999999999999999999999999 99999
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC--CCCCeEEEEEe
Q 008050 427 ASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFE 504 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~s 504 (579)
++|+-|+..++||+|.+.++++|.+|...|++++|.|+|.-|++|+.|+++++||+|..+.+..+.. ....|+++.|+
T Consensus 203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999888887764 34679999999
Q ss_pred eCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 505 PQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 505 p~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
.. |++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..|+||++|.+++||.
T Consensus 283 ~S-GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KS-GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cc-ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 85 89999999999999999999999999999999999999999999999999999999994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-45 Score=349.24 Aligned_cols=286 Identities=29% Similarity=0.486 Sum_probs=264.6
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE-EEEeCCCCCeEEEEEcc-----CCCEEEEEeCCCcE
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF-SALKGHTERATDVTFSP-----VSNHVATSSADRTA 352 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~-~~l~~h~~~V~~l~~sp-----~~~~l~s~s~dg~I 352 (579)
..+.+||..-|.|++|+|||+.||+|+.||.|++||-.+++.+ ..+.+|...|++++|.| ...+|++++.||.|
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 3456799999999999999999999999999999999888765 56899999999999986 46789999999999
Q ss_pred EEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEc-----------
Q 008050 353 RLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFH----------- 420 (579)
Q Consensus 353 ~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~s----------- 420 (579)
+|||+. +..+..+.+|...|+|++|--+| ++++|+.|++|++|+...|.....+.+|...|+.++++
T Consensus 230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred EEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence 999965 46788999999999999998555 89999999999999999999999999999999999876
Q ss_pred CCCC-------------------------EEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 421 PDGS-------------------------LAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 421 pdg~-------------------------~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
+.++ .+++|+.|+++.+|+.... +++..+.+|..-|+.+.||||+++|++++.|
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD 388 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD 388 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence 2233 4999999999999997654 5788899999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEE
Q 008050 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 554 (579)
..|++||.++|+.+.+|.+|-..|+.++|+.| .++|++|+.|.++++|++++.++...+.+|.+.|.+++|+|||+.++
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaD-sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD-SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred cceeeeeCCCcchhhhhhhccceeEEEEeccC-ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 99999999999999999999999999999997 88999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEE
Q 008050 555 TVSHDRWIKLWS 566 (579)
Q Consensus 555 s~s~Dg~I~iW~ 566 (579)
+|+.|..+++|.
T Consensus 468 sggkdkv~~lw~ 479 (480)
T KOG0271|consen 468 SGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEeec
Confidence 999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.2e-41 Score=325.58 Aligned_cols=249 Identities=36% Similarity=0.600 Sum_probs=237.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCc
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~ 402 (579)
+...+|..+.|+.+++.|+||+.+|.+++|+ .+...+.++.+|...|.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 5678999999999999999999999999999 455788999999999999999997 5699999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 403 ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
.+..+.+|...|..++|||+|++|++++.|.+-++||++++..+....+|...|.+++|.++|..+++|+.|..-+|||+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC-CCCEEEEEEcCCe
Q 008050 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP-DEQSIATVSHDRW 561 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~ 561 (579)
|+++++..+.+|...|.+|.|+|+ |+.|++||.|++++|||++....+..+.+|.+-|+.+.|+| .|.+|+|++.|++
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred ccCcEEEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 999999999999999999999995 99999999999999999999999999999999999999998 7889999999999
Q ss_pred EEEEEcCCCCcccc
Q 008050 562 IKLWSTRNKGDEHA 575 (579)
Q Consensus 562 I~iW~~~~~~~~~~ 575 (579)
++||...+.....+
T Consensus 412 ~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKS 425 (459)
T ss_pred eeeecCCCcccchh
Confidence 99999988766554
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=330.55 Aligned_cols=291 Identities=25% Similarity=0.484 Sum_probs=270.5
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
+...-..+|..+.|.|+|+.|++|+..|.+.+|+.........++.|...|.++.|++++.++++|+.+|.|++|+.+-.
T Consensus 91 s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 91 SSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 33344668999999999999999999999999998766666667899999999999999999999999999999998888
Q ss_pred eeEEEeccc-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 361 LLNTFQGHL-DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 361 ~~~~~~~h~-~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
.++.++.|. ..|.+++|+|+...|++++.||+|+|||....+.-..+.+|.-.|.+++|||...+|++|+.|..|++||
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 888888776 8999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
.+++.++.++.+|...|..+.|++++++|+++|.|..+++||+++.+.+..+.+|...|.++.|+|-...+|.+|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 520 VKVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 520 I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|..|.+...+.+..+ .+|...|++++|+|-|..|++|+.|.++++|.-....
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 999999866666655 4799999999999999999999999999999876543
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-39 Score=296.72 Aligned_cols=291 Identities=25% Similarity=0.431 Sum_probs=258.7
Q ss_pred eEEeeecccCCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCC-----CCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHD-GNLLATSSLSGVVKIWSMP-----RLQKFSALKGHTERATDVTFSPVSNHVATSSA 348 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spd-g~~latgs~dg~I~iwd~~-----~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~ 348 (579)
.+.+..++.||.+.|+.++..+. .+.|++++.|..+.+|++. .|..++.++||+..|..+..+++|++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 45678899999999999999887 5788999999999999975 36678899999999999999999999999999
Q ss_pred CCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCeEEEEEcCC--CC
Q 008050 349 DRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH-SRSVYGIAFHPD--GS 424 (579)
Q Consensus 349 dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spd--g~ 424 (579)
|+.+++||+.+ +....|.+|...|.+++|+++++.+++|+.|.+|++||+............ ...|.|+.|+|+ ..
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999655 888999999999999999999999999999999999999876665555443 789999999997 67
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEe
Q 008050 425 LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE 504 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~s 504 (579)
+|++++.|++|++||+++.+....+-+|.+.++.+++||||..+++|+.||.+.+||++.++.++.+. |...|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999988885 46889999999
Q ss_pred eCCCeEEEEEECCCEEEEEECCCCeEEEEecC----C-----CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 505 PQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG----H-----EAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 505 p~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~----h-----~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
|. .+.|+. ..+..|+|||+.++.++..+.. . .-...+++|++||..|++|..|+.|++|.+.
T Consensus 243 pn-rywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 243 PN-RYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CC-ceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 94 555554 4456699999999988776642 1 2335789999999999999999999999875
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-39 Score=311.13 Aligned_cols=295 Identities=29% Similarity=0.503 Sum_probs=280.2
Q ss_pred hcceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCc
Q 008050 272 KVESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRT 351 (579)
Q Consensus 272 ~~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~ 351 (579)
.+....+...+.||..+|+.+-|+|+-.++++++.|++|++||..+++....+++|.+.|.+|.|+..|.+|++++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 45555677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC--CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 008050 352 ARLWNTDG--SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC 429 (579)
Q Consensus 352 I~iwd~~~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg 429 (579)
+++||.+. .++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..+..+.||.+++++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99999765 5777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 430 GLDALARVWDLRTGRSILALEGHVKPVLGISFSPN---------------GYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 430 ~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~---------------g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
+.|.++++|-+.++.+...+..|..+|.+++|.|. +.++.+++.|++|++||+.++.++.++.+|
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999999999999999999999999999762 258999999999999999999999999999
Q ss_pred CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 495 ~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.+.|..++|+| +|.||+++..|+++++||+++.+++..+..|..-|++++|+.+..+++||+-|.++++|..
T Consensus 334 dnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999 5999999999999999999999999999999999999999999999999999999999974
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.1e-39 Score=315.28 Aligned_cols=291 Identities=25% Similarity=0.426 Sum_probs=266.3
Q ss_pred CCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCC----CeeEEEEe----------CCCCCeEEEEEccCCCEEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGN-LLATSSLSGVVKIWSMPR----LQKFSALK----------GHTERATDVTFSPVSNHVATSSA 348 (579)
Q Consensus 284 gh~~~I~~~~~spdg~-~latgs~dg~I~iwd~~~----~~~~~~l~----------~h~~~V~~l~~sp~~~~l~s~s~ 348 (579)
.|..+|.+++|+|-.. ++++|+.|-..++|++.. +.....++ ..+..|++++|+.+|..|++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3999999999999877 999999999999999864 11111111 13457999999999999999999
Q ss_pred CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 349 dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
||.++||+.+|..+.++..|.++|.++.|+..|.||++++.|+++.+||..++.....+.-|...-..+.|..+. -|++
T Consensus 256 ~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~t 334 (524)
T KOG0273|consen 256 DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFAT 334 (524)
T ss_pred CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEee
Confidence 999999999999999999999999999999999999999999999999999999999998888887788897654 7889
Q ss_pred EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCC-
Q 008050 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE- 507 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~- 507 (579)
++.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||.+....+...+..|...|..+.|+|.+
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred -------CeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 508 -------GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 508 -------~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
+..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|+++++|+.||.|.+|+.+.++..+.
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 46899999999999999999999999999999999999999999999999999999999998876654
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5e-37 Score=304.37 Aligned_cols=285 Identities=39% Similarity=0.673 Sum_probs=266.2
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG- 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~- 359 (579)
...+|..+|++++|++++++|++++.+|.|++|++.+++....+..|...+..+.|++++++|++++.+|.|++|+...
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 4568999999999999999999999999999999999888888899999999999999999999999999999999765
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
+....+..|...+.++.|++++.++++++.+|.+++||+.+++....+..|...+.++.|++++.++++++.+|.|++||
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 67778888999999999999988888888899999999998888888888999999999999998999888899999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
+++++.+..+..|...|.+++|+++++.|++++.||.|++||++.++.+..+..|...+.++.|+++ +.++++++.||.
T Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 242 (289)
T cd00200 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDGT 242 (289)
T ss_pred ccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCCCc
Confidence 9999999999999989999999999999999999999999999999999888888889999999997 788888888999
Q ss_pred EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
|++|++.+++.+..+..|...|.+++|++++++|++++.||.|++|+
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999999999999999999999996
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=281.99 Aligned_cols=276 Identities=22% Similarity=0.395 Sum_probs=248.7
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CeeEEEecccCCeEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG---SLLNTFQGHLDRLAR 374 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---~~~~~~~~h~~~I~~ 374 (579)
.-+|++++.|.+|++|...+|.+..+++...+.|+.+...|++..|++++. ..|++||++. .++.++.+|...|+.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 358899999999999999999999999988889999999999999998876 6799999654 478999999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCC
Q 008050 375 MAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHV 453 (579)
Q Consensus 375 l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~ 453 (579)
+.|..+|+.+++|+.||+++|||++.-.....+ .|..+|+++..+|+..-|++|..+|.|++||+....+...+- ...
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 999999999999999999999999986555555 577999999999999999999999999999999887665553 344
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 454 KPVLGISFSPNGYHLATGGEDNTCRIWDLRKR------KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~------~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
..|.++.+.++|.+|+.+...|.+++|++-.. .++..++.|.+.+..+.++|+ +.+|+++|.|.+++||+..+
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC-CcEEEeecCCceEEEEecCC
Confidence 67999999999999999999999999998653 466778899999999999997 89999999999999999988
Q ss_pred C-eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 528 F-KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 528 ~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
. +....+.+|...++.++||.||.||+||+.|+.+++|++..++.+..+
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 8 777788999999999999999999999999999999999998876554
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=297.85 Aligned_cols=294 Identities=22% Similarity=0.379 Sum_probs=272.0
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
..+.+.....||.+-|.|+++.|.+.+|++|+.|++++|||+.+++...++.+|-..|..+++++-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 354 LWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 354 iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
.||+. .+.+..+.+|.+.|.+++.+|.-..|++|+.|.++++||+++...+..+.+|...|..+.+.+-...+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 99965 56788899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
++|++||++.|+...++..|...+.+++.+|..+.|++++.|+ |+.|++..+..+..+.+|+..|+++..+.+ .+++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD--~v~~ 375 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSD--GVLV 375 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccC--ceEE
Confidence 9999999999999999999999999999999999999998875 999999999999999999999999999864 5788
Q ss_pred EEECCCEEEEEECCCCeEEEEec--------CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLS--------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~--------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+|+.+|.+.+||.+++-..+.+. ..+..|++.+|...|..|++|..|.+|++|.-...
T Consensus 376 ~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred EcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 99999999999998876554442 13456899999999999999999999999986543
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.2e-37 Score=301.90 Aligned_cols=280 Identities=26% Similarity=0.455 Sum_probs=259.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLN 363 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~ 363 (579)
.+..|++++|+.+|.+||+|+.||.++||+. ++..+.++..|.++|.++.|+..|+||++++.||++.+|| ..+....
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 4578999999999999999999999999995 5677888889999999999999999999999999999999 5667777
Q ss_pred EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
.+..|...-..+.|- +...|++++.|+.|+++-+.....+.++.+|.+.|.++.|+|.|.+|++++.|++++||.+...
T Consensus 313 ~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 788888876788887 4457899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 444 RSILALEGHVKPVLGISFSPNG---------YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 444 ~~~~~~~~~~~~I~si~~sp~g---------~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
.....+..|...|+.+.|+|.| ..|++++.|++|++||+..+.+++.|..|..+|++++|+|+ +.|+++|
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~-g~ylAsG 470 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN-GRYLASG 470 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC-CcEEEec
Confidence 9999999999999999999953 57999999999999999999999999999999999999996 8999999
Q ss_pred ECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 515 SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 515 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+.||.|.+|+.+++++++.+.+. +.|..++|+.+|.+|..+-.||.+++.|++
T Consensus 471 s~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999999864 459999999999999999999999999875
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.6e-36 Score=320.53 Aligned_cols=290 Identities=37% Similarity=0.636 Sum_probs=264.2
Q ss_pred eeecccC-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 278 LDCTESG-DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ--KFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 278 l~~~~~g-h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
+.....+ |...|.++.|+++|+++++++.++.+++|+..+.. ....+.+|...|.+++|+|++.++++++.|++|+|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 3444444 48899999999999999999999999999998777 77777899999999999999999999999999999
Q ss_pred EeC-CC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 355 WNT-DG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 355 wd~-~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
||+ .. ..+.++.+|...|++++|+|+|+++++|+.|++|++||++++++...+.+|...|++++|++++++|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 997 44 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCe--EEEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCe---EEEEEee
Q 008050 433 ALARVWDLRTGR--SILALEGHVKP--VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI---SQVKFEP 505 (579)
Q Consensus 433 g~I~iwd~~~~~--~~~~~~~~~~~--I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V---~~v~~sp 505 (579)
|.|++||+.++. ++..+..+... +++++|+|++.+|++++.|+.+++||++.+..+..+..|...+ .+..+++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999999 56777766655 9999999999999999999999999999999999999987753 3333344
Q ss_pred CCCeEEEEEECCCEEEEEECCCCeEEEEecCC-CCcEEEEEEcCCCCEEEEEE--cCCeEEEEEcC
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH-EAKVTSLDIHPDEQSIATVS--HDRWIKLWSTR 568 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s--~Dg~I~iW~~~ 568 (579)
++.++++|+.|+.|++||+.++..+..+.+| ...+..+.|++..+++++++ .|+.+++|...
T Consensus 390 -~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 -GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5889999999999999999999999999999 88999999999999999998 78999999864
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=282.17 Aligned_cols=284 Identities=25% Similarity=0.469 Sum_probs=256.3
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeC-CCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSM-PRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TD 358 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~-~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~ 358 (579)
.+.||.+.|+.+.|+|+|.+|++|+.|..|.+|++ ...+....+++|.+.|..+.|..+++.|++++.|.+|+.|| ..
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 45699999999999999999999999999999995 56777888999999999999999999999999999999999 56
Q ss_pred CCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 359 GSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 359 ~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
|+....+++|..-|+.+.-+.-|. ++.+++.|+++++||+++...+.++. ....++++.|..++..+++|+-|+.|++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceee
Confidence 788999999999999998655554 66778889999999999888777763 4567999999999999999999999999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEeCCCC----CeEEEEEeeCCCe
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK----RKSLYVIPAHSN----LISQVKFEPQEGY 509 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~----~~~~~~~~~~~~----~V~~v~~sp~~~~ 509 (579)
||++.+.....+.+|...|+.+..+++|.++.+-+.|+++++||++- .+++..+.+|.. ....++|+|+ +.
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~-~~ 279 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN-GT 279 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC-CC
Confidence 99999999999999999999999999999999999999999999985 345777776532 3566889995 88
Q ss_pred EEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 510 FLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
++.+|+.|..+++||......+..+.||.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 280 ~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999999999999999999999999999999999999999998743
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=285.13 Aligned_cols=286 Identities=19% Similarity=0.282 Sum_probs=251.3
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
.+...|..+|.+++.+|+.++++||+.|..-.||++.++.....+.+|...|+++.|+.+|.+|++|+.+|.|+||....
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999544
Q ss_pred -CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 360 -SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 360 -~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
.....+......|.-+.|||.+..|+.|+.||.+.+|.+.++.....+.+|+.++++-.|.|+|+.++++..||+|++|
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~W 217 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVW 217 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEE
Confidence 4555666677889999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEecC---------------------------------------------------CCCeEEE---EEcCC
Q 008050 439 DLRTGRSILALEGH---------------------------------------------------VKPVLGI---SFSPN 464 (579)
Q Consensus 439 d~~~~~~~~~~~~~---------------------------------------------------~~~I~si---~~sp~ 464 (579)
|+.++.++..+... ...+.|+ .|+..
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 99999887766510 0001122 22223
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEE
Q 008050 465 GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSL 544 (579)
Q Consensus 465 g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 544 (579)
=.+.++|+-||+|.|||+...+..+.+ .|...|..+.|.+ ..+|++++.+|.|+.||.++|+++..+.+|...|.++
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f 374 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDF 374 (399)
T ss_pred cchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEE
Confidence 346788999999999999776655544 5677899999996 5688999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 545 DIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 545 ~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+++|++++++|+|.|++.+||.+.
T Consensus 375 ~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 375 ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999875
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-37 Score=320.91 Aligned_cols=274 Identities=28% Similarity=0.513 Sum_probs=246.2
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNT 364 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~ 364 (579)
...++|+.|+.|+.+||.|..|..|++|.+... .++.+++ ...+ ..+=+.+.|-.+.+.|. .......
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-~~~l---------~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-ASDL---------SNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-hhhh---------ccccccccchhhhhccccCCceeEE
Confidence 457999999999999999999999999998754 2223331 1111 12223455555666663 3456667
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR 444 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~ 444 (579)
+.+|.++|..+.|+|+.++|++++.|+++++|.+.+...+..+.+|..+|+++.|+|.|-+|++++.|++.++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 445 SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 445 ~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
+...+.+|...|.|+.|+||+.|+++||.|.+|++||+.+|..++.|.+|.+.|.+++|+|. |.+|++|+.||.|++||
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWD 605 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999995 99999999999999999
Q ss_pred CCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 525 GRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 525 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+.+++++..+.+|.+.|.++.||.+|..|++||.|.+|++||+....
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999999999999999999999999987543
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-35 Score=270.88 Aligned_cols=286 Identities=25% Similarity=0.472 Sum_probs=246.5
Q ss_pred EEeeecccCCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCC---CeeEEEE-eCCCCCeEEEEEccCCCEEEEEeCCC
Q 008050 276 LYLDCTESGDDRPLSGCSYSHD-GNLLATSSLSGVVKIWSMPR---LQKFSAL-KGHTERATDVTFSPVSNHVATSSADR 350 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spd-g~~latgs~dg~I~iwd~~~---~~~~~~l-~~h~~~V~~l~~sp~~~~l~s~s~dg 350 (579)
+.+...+.||.+.+..++|+|- |.+||+|+.|..|+||+... ..+...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4566778899999999999998 89999999999999999884 3344444 36999999999999999999999999
Q ss_pred cEEEEeCCC---CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCC
Q 008050 351 TARLWNTDG---SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG---VELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 351 ~I~iwd~~~---~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~---~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
++.||.... +.+..+.+|...|.+++|+.+|+||++++.|++|.||.+..+ .+...+..|...|..+.|||...
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 999998432 678899999999999999999999999999999999999754 45667889999999999999888
Q ss_pred EEEEEeCCCeEEEEeCC---CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEE
Q 008050 425 LAASCGLDALARVWDLR---TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQV 501 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~---~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v 501 (579)
+|++++.|++|++|+-. .-.++.++.+|...|.+++|++.|..|++++.|++++||-+... .-..|...++.+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDV 239 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEee
Confidence 99999999999999766 34688999999999999999999999999999999999986522 112477889999
Q ss_pred EEeeCCCeEEEEEECCCEEEEEECCCC------eEEE-EecCCCCcEEEEEEcCC-CCEEEEEEcCCeEEEEEcC
Q 008050 502 KFEPQEGYFLVTGSYDMTVKVWSGRDF------KLVK-SLSGHEAKVTSLDIHPD-EQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~dg~I~iwd~~~~------~~~~-~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~iW~~~ 568 (579)
.|. ...|++++.|+.|++|..... +++. .-..|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus 240 ~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 240 PWD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 998 347999999999999975432 2222 33468899999999994 6789999999999999874
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-35 Score=301.72 Aligned_cols=305 Identities=24% Similarity=0.400 Sum_probs=267.9
Q ss_pred hcceEEeeecccCCCCCeeEEEEcCCCCEEEEEecC-CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC
Q 008050 272 KVESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLS-GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR 350 (579)
Q Consensus 272 ~~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg 350 (579)
.+..+.+.+.+.-...+|..++|+..|++||.|+.. |.+.||++.+..-+...++|...+++++++|||+++++|+.||
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg 372 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG 372 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC
Confidence 455666667777778899999999999999999865 8999999999988888999999999999999999999999999
Q ss_pred cEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEE
Q 008050 351 TARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS-RSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 351 ~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~~V~~l~~spdg~~l~s 428 (579)
.|+||| ..+-+..+|..|...|+.++|+..|+.+++++.||+|+.||+.......++.... ....|++..|.|.+++.
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 999999 5667999999999999999999999999999999999999999998888876543 45778999999999999
Q ss_pred EeCCC-eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeC
Q 008050 429 CGLDA-LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQ 506 (579)
Q Consensus 429 g~~dg-~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~ 506 (579)
|+.|. .|.+|++.+|+.+-.+.+|.++|.+++|+|.|..|++|+.|.+|++||+-... .+.++ .+...+..++|.|+
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPD 531 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCC
Confidence 99886 59999999999999999999999999999999999999999999999986543 33344 34677899999997
Q ss_pred CCeEEEEEECCCEEEEEECCCCeEEEEecC--------------------CCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--------------------HEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
|.-|++++.||.|.+||...+..+..+.+ .....+.+++|+||.+|++||....|+||+
T Consensus 532 -G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 -GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred -CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 77889999999999999887766544432 224589999999999999999999999999
Q ss_pred cCCCCccccccC
Q 008050 567 TRNKGDEHAMDV 578 (579)
Q Consensus 567 ~~~~~~~~~~~~ 578 (579)
+.++-....+.+
T Consensus 611 v~~~vllkkfqi 622 (893)
T KOG0291|consen 611 VPEGVLLKKFQI 622 (893)
T ss_pred CchhheeeeEEe
Confidence 998877666543
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=300.31 Aligned_cols=291 Identities=22% Similarity=0.451 Sum_probs=265.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC-CcEEEEeC-CCCee
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD-RTARLWNT-DGSLL 362 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d-g~I~iwd~-~~~~~ 362 (579)
....|+|++|++..++|++|-..|.+.+|.++....++.+.-...+|..+.|+..|++|+.|+.. |.+-||+. ....+
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence 34789999999999999999999999999999999999999888999999999999999999876 89999994 45677
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
...++|...+++++++|||+++++|+.||.|++||..++-++.++..|.+.|+.+.|+..|+.+++.+.||+|+.||+..
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 443 GRSILALEGHV-KPVLGISFSPNGYHLATGGEDN-TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 443 ~~~~~~~~~~~-~~I~si~~sp~g~~l~tgs~Dg-~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
.++..+|.... ....|++..|.|..+++|+.|. .|+||++.+|+.+..+.+|.++|.+++|+|. +..|++||+|.+|
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~-~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD-GSLLASGSWDKTV 502 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc-cCeEEeccccceE
Confidence 99999987543 3467899999999999999876 5999999999999999999999999999997 7899999999999
Q ss_pred EEEECCCC-eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 521 KVWSGRDF-KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 521 ~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
++||+-.. ..+.++. +...++.+.|+|+|+.|++++.||.|.+||.+...+...+|
T Consensus 503 RiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred EEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 99997543 3444554 56679999999999999999999999999999887775554
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4e-35 Score=272.67 Aligned_cols=257 Identities=24% Similarity=0.396 Sum_probs=230.6
Q ss_pred eeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCC------CCeeEEEecccCCeEEEEEecCCCEEEEEeCCC
Q 008050 319 QKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTD------GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK 391 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~------~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg 391 (579)
....++.+|++.|+.++..+. .+.+++++.|.++.+|++. |..++.+.+|...|..+..+++|++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678899999999999886 5788999999999999954 356889999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CCCeEEEEEcCC--CCE
Q 008050 392 TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGH--VKPVLGISFSPN--GYH 467 (579)
Q Consensus 392 ~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~I~si~~sp~--g~~ 467 (579)
++++||+.+++....+.+|...|.+++|++|.+.+++|+.|.+|++|++... +..++..+ ...|+|++|+|+ ..+
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 9999999999999999999999999999999999999999999999998654 44444333 788999999997 689
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc
Q 008050 468 LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
|++++.|++|++||+++.+....+.+|++.++.+.++|| |.+.++|+.||.+.+||++.++.+..+. |...|.+++|+
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 999999999999999999999999999999999999997 8899999999999999999999988885 78899999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCccccccCC
Q 008050 548 PDEQSIATVSHDRWIKLWSTRNKGDEHAMDVD 579 (579)
Q Consensus 548 ~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~D 579 (579)
|+.-+|+.+ .+..|+|||+.++.....+.+|
T Consensus 243 pnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 243 PNRYWLCAA-TATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred CCceeEeec-cCCceEEEeccchhhhhhcccc
Confidence 987666655 4566999999999988877665
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-34 Score=269.44 Aligned_cols=250 Identities=22% Similarity=0.372 Sum_probs=230.5
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~ 399 (579)
.+++++|.+.|.++.|++++++|++++.||.+.||| ..+...+.+.-....|..++|+|+|+++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 367899999999999999999999999999999999 6777888888888999999999999999999999999999998
Q ss_pred CC------cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEe
Q 008050 400 TG------VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP-NGYHLATGG 472 (579)
Q Consensus 400 ~~------~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp-~g~~l~tgs 472 (579)
+. .....+.+|.+.+.|+.|.+|+ .|++++.|.+..+||+.+++.+..|.+|.+.|.+++++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 65 3345677999999999999855 788999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC--CCCcEEEEEEcCCC
Q 008050 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--HEAKVTSLDIHPDE 550 (579)
Q Consensus 473 ~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg 550 (579)
.|+..++||+|.+.++.+|.+|...|+.++|.|+ |.-|++|+.|++.++||++..+.+..+.. -..+|++++||..|
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 9999999999999999999999999999999996 88999999999999999999888877753 34579999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCCc
Q 008050 551 QSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
++|++|..|.++.+||.-.++.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGER 307 (343)
T ss_pred cEEEeeecCCceeEeeccccce
Confidence 9999999999999999866553
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-35 Score=285.82 Aligned_cols=290 Identities=23% Similarity=0.329 Sum_probs=247.2
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC---eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL---QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLW 355 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iw 355 (579)
...+..|...|.-+.||++|+|||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|+.+..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 3456789999999999999999999999999999997543 4477888999999999999999999999999999999
Q ss_pred eCCCCeeEEEec--ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCeEEEEEcCCCCEEEEEeCC
Q 008050 356 NTDGSLLNTFQG--HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG-HSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 356 d~~~~~~~~~~~--h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~-~~~~V~~l~~spdg~~l~sg~~d 432 (579)
|........... +...+.+++|.|||..+++|+.|+++..||+..... ....+ ....|.+++..+||.++++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecc
Confidence 976544443333 457899999999999999999999999999975432 22222 22569999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCC--eEEEEEeeCCCeE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL--ISQVKFEPQEGYF 510 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~--V~~v~~sp~~~~~ 510 (579)
..|++|+..+........ ...+|+++++|.+|+++++.-.+..|.+||+...+.+..+.+|... +-.-||--.+..+
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 999999987765554443 3456999999999999999999999999999988888888887643 5555676555679
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC-CEEEEEEcCCeEEEEEcCCC
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE-QSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+++||.|+.|+||+..+++++..+.||...|++++|+|.. .+++++|.||+|+||.....
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999999999954 56899999999999998654
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.7e-36 Score=299.00 Aligned_cols=288 Identities=26% Similarity=0.433 Sum_probs=253.8
Q ss_pred eeecccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCC-CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 008050 278 LDCTESGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPR-LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLW 355 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iw 355 (579)
+..+..||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.+++|+.+|..|++++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 4567789999999999999 899999999999999999876 89999999999999999999999999999999999999
Q ss_pred eCCCCeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 356 NTDGSLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 356 d~~~~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
|.+...+..-......++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+.+++.+.|+.
T Consensus 286 DtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 286 DTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred ccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 97765555544456678999999999 78999999999999999999998888899999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEeCCC--CCeEEEEEeeCCC
Q 008050 435 ARVWDLRTGRSILALE-GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR---KSLYVIPAHS--NLISQVKFEPQEG 508 (579)
Q Consensus 435 I~iwd~~~~~~~~~~~-~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~---~~~~~~~~~~--~~V~~v~~sp~~~ 508 (579)
++||+.+..-.+.... .+.....++..+|++.++++-+.|+.|.+|.+... .....+.+|. +.-..+.|+|+ |
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-G 444 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-G 444 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-C
Confidence 9999999876654432 23334678999999999999999999999986542 2234556663 45677999997 8
Q ss_pred eEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC-CEEEEEEcCCeEEEEE
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE-QSIATVSHDRWIKLWS 566 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~ 566 (579)
.+|++|+.||.+.+||.++.+++..+..|+..++.+.|+|.. ..++|||.||.|++|+
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999999999999999999999999999999954 4599999999999996
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=301.09 Aligned_cols=294 Identities=24% Similarity=0.402 Sum_probs=264.5
Q ss_pred ceEEeeecccCCCCCeeEEEE-cCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 274 ESLYLDCTESGDDRPLSGCSY-SHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~-spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
..+.+.....|....|..|+| .|+.++|++++..+.+++|++.+..+. .+.+|...|.++....+|.+|++|+.|+++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 455666777899999998887 577899999999999999998887766 778999999999966678899999999999
Q ss_pred EEEeCCCC-----eeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcE-----EE----EEecCCCCeEEE
Q 008050 353 RLWNTDGS-----LLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVE-----LL----LQEGHSRSVYGI 417 (579)
Q Consensus 353 ~iwd~~~~-----~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~-----~~----~~~~~~~~V~~l 417 (579)
++|.++.. ++....+|.+.|.+++++..+ .+|+++|.|+++++|++...+. .. ....|...|+|+
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 99987442 345668999999999997655 4899999999999999976221 11 234799999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCC
Q 008050 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL 497 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 497 (579)
+++|+.+++++|+.|.+.+||++.......++.+|...|.++.|+++...++|+|.|++|+||.+.++.++.+|.+|...
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a 549 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA 549 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
|..+.|-.+ +..|++++.||-|++|++++..++.++..|++.|+++..++.+.+++||+.||.|.+|.=.+
T Consensus 550 Vlra~F~~~-~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 550 VLRASFIRN-GKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eEeeeeeeC-CcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999985 88999999999999999999999999999999999999999999999999999999997544
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=300.33 Aligned_cols=293 Identities=28% Similarity=0.462 Sum_probs=252.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCC--C
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN--HVATSSADRTARLWNTDG--S 360 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~s~s~dg~I~iwd~~~--~ 360 (579)
|+.||..++|+|.|.+|++|+.||.++|||+..+.....|+||.+.|.++.|+|+-+ .|++|..|+.+++||... .
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 999999999999999999999999999999999999999999999999999999765 489999999999999663 2
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc--------------------------EE----------
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV--------------------------EL---------- 404 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~--------------------------~~---------- 404 (579)
++..+..|.+.|+++.|.+++..+++++.|..+.+||+.+.+ .+
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 467788899999999999998888888888888888762100 00
Q ss_pred --------------------------------------------------------------------------------
Q 008050 405 -------------------------------------------------------------------------------- 404 (579)
Q Consensus 405 -------------------------------------------------------------------------------- 404 (579)
T Consensus 264 ~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT 343 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT 343 (775)
T ss_pred EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe
Confidence
Q ss_pred ---------------EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE------------------------
Q 008050 405 ---------------LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS------------------------ 445 (579)
Q Consensus 405 ---------------~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~------------------------ 445 (579)
..+.+|...|.++....+|-+|++|+.|.++++|.++++..
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 12235666666676555667888888888888886522100
Q ss_pred ------------E----------------E----EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 446 ------------I----------------L----ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 446 ------------~----------------~----~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
+ . +...|.+.|++++++|+.++|+|||.|.+.+||++.......++.+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence 0 0 0114778899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
|...|.++.|++. .++++++|.|++|+||.+.++.++++|.||...|..+.|-.+|+.|++++.||.|++|+++++.++
T Consensus 504 H~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 504 HTRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred CccceEEEEeccc-cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 9999999999995 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 008050 574 HAMDV 578 (579)
Q Consensus 574 ~~~~~ 578 (579)
.++|-
T Consensus 583 ~tlD~ 587 (775)
T KOG0319|consen 583 MTLDA 587 (775)
T ss_pred hhhhh
Confidence 88774
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-33 Score=321.16 Aligned_cols=282 Identities=19% Similarity=0.320 Sum_probs=241.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC----e----eEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcE
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL----Q----KFSALKGHTERATDVTFSPV-SNHVATSSADRTA 352 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~----~----~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I 352 (579)
..+|...|.+++|+++|++|++|+.||.|+||++... . ....+. +...|.+++|++. +.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3458999999999999999999999999999997532 1 122233 4568999999874 7899999999999
Q ss_pred EEEeCC-CCeeEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEc-CCCCEEEEE
Q 008050 353 RLWNTD-GSLLNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFH-PDGSLAASC 429 (579)
Q Consensus 353 ~iwd~~-~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~s-pdg~~l~sg 429 (579)
++||.. ++.+..+.+|.+.|++++|++ ++.+|++|+.||+|++||+.++..+..+..+ ..+.++.|+ ++|.+|++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 999965 567788899999999999997 7889999999999999999998888777654 679999995 478999999
Q ss_pred eCCCeEEEEeCCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeEEEeCCCCCeEEEE
Q 008050 430 GLDALARVWDLRTGR-SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK------RKSLYVIPAHSNLISQVK 502 (579)
Q Consensus 430 ~~dg~I~iwd~~~~~-~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~------~~~~~~~~~~~~~V~~v~ 502 (579)
+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|++|++||++. ...+..+.+|...+..+.
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999999876 567788999999999997 678999999999999999974 357788999999999999
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-------------cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-------------SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-------------~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
|+++ +.+|++|+.||.|++|+......+..+ ..|...|.+++|++++.+|++|+.||.|+||++
T Consensus 716 ~s~~-~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVS-DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCC-CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9996 789999999999999997655433221 234567999999999999999999999999986
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=293.99 Aligned_cols=282 Identities=27% Similarity=0.432 Sum_probs=262.7
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DG 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~ 359 (579)
.+..++..|.++.|+|...+++++-.+|.|.|||.++...++.+.-..-+|.+..|-...+++++|+.|..|++|+. .+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 33447889999999999999999999999999999999999999999999999999999999999999999999995 45
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARV 437 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~i 437 (579)
+.+..|..|.+.|.+++.||...+++++|.|.+|++||.+.+ .+.+++.+|..-|.+++|+| |.+.+++++.|++|++
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 889999999999999999999999999999999999999875 56778999999999999999 6779999999999999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNG--YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g--~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
|.+.+..+..++++|...|+|++|-+-| .+|++|+.|.+|+|||..+..|+.++.+|.+.|+.++|+|. -.++++|+
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~-lpiiisgs 246 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE-LPIIISGS 246 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC-CcEEEEec
Confidence 9999999999999999999999999854 69999999999999999999999999999999999999995 78999999
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEE
Q 008050 516 YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIK 563 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 563 (579)
.||+++||+..+.++..++.-.-..|++++-.+.+..++.|...|.|.
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 999999999999999998887788999999998888888888777554
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-35 Score=304.40 Aligned_cols=260 Identities=35% Similarity=0.573 Sum_probs=222.9
Q ss_pred eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
...++.||.++|..+.|+|+.++|++++.|+++++|.+.+...+..++||..+|+++.|+|.|-+|+|++.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred C-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008050 358 D-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 358 ~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
+ ...+..+.+|.+.|.|+.|||+..|+++||.|.+|++||+.+|..++.+.||.++|.+++|+|+|.+|++|+.||.|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 4 578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC
Q 008050 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
+||+.+++.+..+.+|.+.|+++.|+.+|..|++|+.|++|++||+.+....... .|-. +..+.. . ..
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~-~~~~----~~~~~~------~-~~ 670 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNL-GHIS----TSNSAI------T-QE 670 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccc-cccc----cccccc------c-cc
Confidence 9999999999999999999999999999999999999999999998754333111 1100 000000 0 00
Q ss_pred CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE
Q 008050 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 517 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 556 (579)
++ .+.-++..+.....+|.++.|...+-.|++|
T Consensus 671 ~~-------~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 671 NN-------ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CC-------CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 00 2334555666666789999998766445544
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-33 Score=278.43 Aligned_cols=296 Identities=22% Similarity=0.345 Sum_probs=250.8
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe---CCCCCeEEEEEccCCCEEEEEeCCC
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK---GHTERATDVTFSPVSNHVATSSADR 350 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~sp~~~~l~s~s~dg 350 (579)
..|....+...|.+-|.|+.|+|||.++++.+.||++.+||-.+++.+..+. +|.+.|.+++|+||+..|++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 4567788888999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred cEEEEeCCC-CeeEEEeccc---CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 351 TARLWNTDG-SLLNTFQGHL---DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 351 ~I~iwd~~~-~~~~~~~~h~---~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
+++|||+.. +.+.++.-.. +....+-|. +..|++.+.+|+|.+++......+..+.+|...|+++..++++.+|
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 999999654 4555554322 233444554 6789999999999999999999889999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCeEE-----------EEEec---------------------------C----------------
Q 008050 427 ASCGLDALARVWDLRTGRSI-----------LALEG---------------------------H---------------- 452 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~~-----------~~~~~---------------------------~---------------- 452 (579)
++|+.||.|.-||..+|..- ..+.. +
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 99999999999998654321 00000 0
Q ss_pred ---------------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEeCCCCCeEEEEE
Q 008050 453 ---------------------------VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS--LYVIPAHSNLISQVKF 503 (579)
Q Consensus 453 ---------------------------~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~--~~~~~~~~~~V~~v~~ 503 (579)
.-...+++++|++..+++|+.||.|+||.+..... ......|.+.|++++|
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 01235678899999999999999999999986543 3345679999999999
Q ss_pred eeCCCeEEEEEECCCEEEEEECCCCeEEE-EecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRDFKLVK-SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
+|+ +.||++|...+.+.+||+.+.+... .+.-|.++|.+++|+|+..+++||+.|-+|.||+++....
T Consensus 496 Spd-~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 496 SPD-GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred CCC-CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 997 8999999999999999998877633 3445999999999999999999999999999999987653
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=276.37 Aligned_cols=254 Identities=28% Similarity=0.525 Sum_probs=236.3
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 318 LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
.+....+++|.+.|.|+++.|.+.+|++|+.|++|+|||+ .++...++.+|...|..+++++-..|+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 3455667899999999999999999999999999999995 556777899999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008050 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNT 476 (579)
Q Consensus 397 d~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~ 476 (579)
|++..+.+..+.+|-+.|+|++.+|.-..|++|+.|.++++||+|+...+..+.+|..+|.++.+.+-.-.+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999889999999999999999999999999999999999999997778999999999
Q ss_pred EEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE
Q 008050 477 CRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 477 I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 556 (579)
|++||++.++...++..|...|.+++.+|. .+.|++++.|+ |+-|++..+..+..+.+|.+.|.++..+.|| ++++|
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEc
Confidence 999999999999999999999999999996 77888888774 9999999999999999999999999998775 78999
Q ss_pred EcCCeEEEEEcCCCCccc
Q 008050 557 SHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 557 s~Dg~I~iW~~~~~~~~~ 574 (579)
+.+|.|.+||.+++-+-+
T Consensus 378 ~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred CCceEEEEEecCcCcccc
Confidence 999999999998875433
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=255.22 Aligned_cols=268 Identities=22% Similarity=0.339 Sum_probs=238.5
Q ss_pred eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ--KFSALKGHTERATDVTFSPVSNHVATSSADRTARLW 355 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iw 355 (579)
...+....++.|+.+.+.|++++||+++ ...|++||+.++. .+.++.+|...|+++.|..+|+++++|+.||+++||
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIW 110 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIW 110 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEE
Confidence 3444555678999999999999999988 5689999998765 588899999999999999999999999999999999
Q ss_pred eCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 356 NTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 356 d~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
|+..-.......|..+|+++..||+...|++|..+|.|++||+.+..+.... ......|.++...+||++++.+...|.
T Consensus 111 dlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 111 DLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred eccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 9888777777788899999999999999999999999999999887555433 234468999999999999999999999
Q ss_pred EEEEeCCCC------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCC
Q 008050 435 ARVWDLRTG------RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 435 I~iwd~~~~------~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~ 507 (579)
.++|++-+. .++..++.|.+-|..+.+||++++|++++.|.+++||+..+. +.-..+.+|...+..++|+.+
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d- 269 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD- 269 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC-
Confidence 999998764 355678899999999999999999999999999999999887 666678899999999999997
Q ss_pred CeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc
Q 008050 508 GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 508 ~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
+.||++|+.|+.+++|++..++.+..+.+|.....+++..
T Consensus 270 g~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 8999999999999999999999999999998888777764
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=279.71 Aligned_cols=274 Identities=26% Similarity=0.477 Sum_probs=244.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCe
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSL 361 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~ 361 (579)
......|.|+.+. ...+++|..|++|+|||.++..+...+.||++.|.|+.|. ...|++|+.|.+|++|| .++++
T Consensus 194 Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 194 SENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 3467789999885 5689999999999999999999999999999999999996 46999999999999999 56688
Q ss_pred eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 362 LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE---LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~---~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
+.++.+|...|..+.|+ +.++++++.|.++.+||+..... ...+.||...|+.+.|+. +++++++.|.+|++|
T Consensus 270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 99999999999999997 66999999999999999977543 234569999999999964 499999999999999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM 518 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg 518 (579)
++.+++.+.++.+|...|-|+.+ +|+++++|+.|++|++||+..|.++..+.+|...|.++.|+ ...+++|++||
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDG 420 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDG 420 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---Cceeeeccccc
Confidence 99999999999999999988887 78899999999999999999999999999999999999997 45799999999
Q ss_pred EEEEEECCCCe---------EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 519 TVKVWSGRDFK---------LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 519 ~I~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+|++||+..+. ++..+..|++.|..+.|. ...|++++.|.+|-|||+-++-
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 99999987653 455666799999999996 5679999999999999997653
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.1e-33 Score=269.79 Aligned_cols=280 Identities=29% Similarity=0.484 Sum_probs=246.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC---EEEEEeCCCcEEEEeCCC-
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN---HVATSSADRTARLWNTDG- 359 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~---~l~s~s~dg~I~iwd~~~- 359 (579)
-|..-|+++... +++|++|++||.+++||. .|+.+..+.+|.++|.+++|.-.+. .|++++.|.++++|..+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 478888888877 789999999999999995 6788889999999999999875544 499999999999998543
Q ss_pred ----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------------------------CcEEEEEecC
Q 008050 360 ----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-------------------------GVELLLQEGH 410 (579)
Q Consensus 360 ----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-------------------------~~~~~~~~~~ 410 (579)
+.+....||...|.++...++|..+++|+.|.+|.+|+..+ +..+..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 23344559999999999999999999999999999999321 2345577899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---e
Q 008050 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK---S 487 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~---~ 487 (579)
...|.++.|++ ...+++++.|.+|+.||+.++..+.++.+. ..++++.+++..++|++|+.|..|++||-|++. .
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999998 568999999999999999999999888754 559999999999999999999999999998753 4
Q ss_pred eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 488 LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 488 ~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
.+++.+|.+.|..+.|+|.+.+.|++|++||++++||+++.+ ++..+.+|..+|.++.|+ ++.+|++||.|.+|+|+.
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 567889999999999999999999999999999999999887 999999999999999998 466899999999999997
Q ss_pred cCC
Q 008050 567 TRN 569 (579)
Q Consensus 567 ~~~ 569 (579)
...
T Consensus 417 ~~~ 419 (423)
T KOG0313|consen 417 GSP 419 (423)
T ss_pred ccc
Confidence 643
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-33 Score=253.25 Aligned_cols=281 Identities=23% Similarity=0.374 Sum_probs=251.2
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DG 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~ 359 (579)
.+.+|.++|.++.|+-+|+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||+ .|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999995 56
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~--~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
+....+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. +.++.+......|.++... +..|++|+.||+++.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 888999999999999999999999999999999999999765 5667777777889988886 458999999999999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeE--EEEEeeCCCeEEEEEE
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS--QVKFEPQEGYFLVTGS 515 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~--~v~~sp~~~~~l~sgs 515 (579)
||+|.|+....+-+| +|++++|+++|+..+.++-|+++++.|-.+|+.+..+.+|.+.-. .++++. ....+++|+
T Consensus 170 ydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgS 246 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGS 246 (307)
T ss_pred EEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEecc
Confidence 999999887766554 699999999999999999999999999999999999999977543 344554 467899999
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCc-EEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 516 YDMTVKVWSGRDFKLVKSLSGHEAK-VTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.||.|++||+-+...+..+..+... |+++.++|.-..|+++. ++.+.+|--
T Consensus 247 EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 247 EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 9999999999999999999988877 89999999887788776 445777754
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-34 Score=274.15 Aligned_cols=261 Identities=27% Similarity=0.478 Sum_probs=243.0
Q ss_pred CCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEE
Q 008050 317 RLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRL 395 (579)
Q Consensus 317 ~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~l 395 (579)
.......+.+|...|+.+.|+|+-..+++++.|++|++|| .+++....+++|.+.+..+.|+..|+++++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 3345556678999999999999999999999999999999 566788899999999999999999999999999999999
Q ss_pred EECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 396 WDVDT-GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 396 wd~~~-~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
||..+ ..++....+|...|.+++|-|.|.++++++.|.+|+.|++.+|.++.+|.+|...|..+..+.||.++++++.|
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99987 45666677999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEEeCCCCCeEEEEEeeC--------------CCeEEEEEECCCEEEEEECCCCeEEEEecCCCCc
Q 008050 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ--------------EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAK 540 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~--------------~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 540 (579)
.+|++|-+.++.+...+..|..+|-+++|.|. ++.++++++.|++|++||+.++.++.++.+|.+.
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999999999999999999999999763 3469999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 541 VTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 541 V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
|.+++|+|.|+||+++..|+++++||++++.++..++
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 9999999999999999999999999999999887665
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-33 Score=287.29 Aligned_cols=285 Identities=27% Similarity=0.446 Sum_probs=260.3
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DG 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~ 359 (579)
...||...|.++++|.+...+++|+ .+.++||+..+.+++.++... .+.+..|.|.++++++|...|.+.+||+ ..
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 3468999999999999988888776 788999999999999998754 8999999999999999999999999994 45
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----CcE---EE----EEecCCCCeEEEEEcCCCCEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-----GVE---LL----LQEGHSRSVYGIAFHPDGSLAA 427 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-----~~~---~~----~~~~~~~~V~~l~~spdg~~l~ 427 (579)
..+.++..|.+.|+.++.+|++..+++|+.|.+|++||..- +.. +. ..-.....|.|+.++|||++|+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 67778889999999999999999999999999999999742 111 11 1112346799999999999999
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCC
Q 008050 428 SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~ 507 (579)
++-.|++++||-+.+.+....+-+|.-+|.|+.++|+++.++|||.|..|+||-+.-|.|-..+-+|...|.++.|.|.
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~- 603 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK- 603 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 508 GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 508 ~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
.++++++|.|+.|+-||...++.+..+.+|...|++++.+|+|.+++++|.|.+|++|....
T Consensus 604 ~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 88999999999999999999999999999999999999999999999999999999998765
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-33 Score=258.37 Aligned_cols=289 Identities=20% Similarity=0.313 Sum_probs=245.4
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
.+.||+++++.+.|+.+|.+|++++.|....||-..+|+.+.++.+|.+.|+|+..+.+.+++++|+.|.++++||....
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999996554
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCC-----CeEEEEECC-------CCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFD-----KTWRLWDVD-------TGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~-------~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
.....-.....|..+.|+.+|++++.+..+ +.|.++|++ ..........+.+.++.+-|.|-+.+|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 444444467789999999999988876543 689999998 34456666678899999999999999999
Q ss_pred EeCCCeEEEEeCCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCC
Q 008050 429 CGLDALARVWDLRTGRS-ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~-~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~ 507 (579)
|..||.|.+||+++|+. +.....|...|+.|+++++..++++++.|.+-++||+++..+++++.. ..+|++.+++|..
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~ 243 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLL 243 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceeccccc
Confidence 99999999999999854 455578999999999999999999999999999999999999999876 4789999999975
Q ss_pred CeEEEEEECCC-EEEEEECCCC------------eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 508 GYFLVTGSYDM-TVKVWSGRDF------------KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 508 ~~~l~sgs~dg-~I~iwd~~~~------------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
...++.|+.+- .|.--+.+.+ +.+..+++|-++|++++|+|+|+..++|+.||.|++.-+...
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 54444444331 1222222222 346678899999999999999999999999999999877654
No 40
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=280.94 Aligned_cols=250 Identities=27% Similarity=0.522 Sum_probs=226.8
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCC-CCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGH-TERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
..|.....+..|+.+|+++.|+++|.++++|+.+|.|++|+..- ..+..+++| ...|++++|+|+...|++++.||+|
T Consensus 126 ~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 126 TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeE
Confidence 44555666789999999999999999999999999999999643 444445554 4899999999999999999999999
Q ss_pred EEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 353 RLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 353 ~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
+||| ...+....+.+|.-.|.+++|||....+++++.|..|++||.+++.++..+.+|+..|..+.|++++++|++++.
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 9999 455666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCe
Q 008050 432 DALARVWDLRTGRSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGY 509 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~ 509 (579)
|..+++||+++.+.++.+++|...++++.|+| +..+|.+|+.||.|..|.+...+++..+. +|...|.+++|+|- |.
T Consensus 285 D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-Gh 363 (464)
T KOG0284|consen 285 DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-GH 363 (464)
T ss_pred CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc-ce
Confidence 99999999999999999999999999999999 67789999999999999998666666554 69999999999997 99
Q ss_pred EEEEEECCCEEEEEEC
Q 008050 510 FLVTGSYDMTVKVWSG 525 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~ 525 (579)
+|++|+.|.++++|.-
T Consensus 364 il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 364 ILATGSNDRTVRFWTR 379 (464)
T ss_pred eEeecCCCcceeeecc
Confidence 9999999999999963
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-31 Score=266.63 Aligned_cols=288 Identities=24% Similarity=0.382 Sum_probs=254.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee--EEEEeCCCCCeEEEEEccCCCEEEEEeCC----CcEEEE
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK--FSALKGHTERATDVTFSPVSNHVATSSAD----RTARLW 355 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~~l~s~s~d----g~I~iw 355 (579)
-..|..+++-..|||.|.|+|+|...|+|+|||....+. ..+++.-.++|..|+|+.+++.|+..+.. |.+.+|
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 357899999999999999999999999999999866332 34567788999999999999998887654 578888
Q ss_pred eCCCCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 356 NTDGSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 356 d~~~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
| .|..+..+.+|...|+++.|-|... .+++|+.|++|.+|+---.+....+..|..-|+|+.|+|||.++++.+.||.
T Consensus 135 D-SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 135 D-SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK 213 (603)
T ss_pred c-CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence 8 4667788999999999999999876 6899999999999987666666777789999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCC---CeEEEEEeeCCC
Q 008050 435 ARVWDLRTGRSILALE---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN---LISQVKFEPQEG 508 (579)
Q Consensus 435 I~iwd~~~~~~~~~~~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~---~V~~v~~sp~~~ 508 (579)
|.+||-.+|+.+..+. +|.+.|.+++|+||+..|++++.|.+++|||+.+.+++.++..... .-..+.|. +
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq---k 290 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---K 290 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe---C
Confidence 9999999999999998 8999999999999999999999999999999999999998876433 23345565 3
Q ss_pred eEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
..|++.+.+|+|.+++......+..+.+|...|+++..++++++|++|+.||.|.-|+...+...
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 46888899999999999999999999999999999999999999999999999999999876543
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=267.01 Aligned_cols=283 Identities=24% Similarity=0.378 Sum_probs=255.3
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe--------CCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK--------GHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~--------~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
..|....+-|..|||||+||++|+.||.|.+||+.+|+..+.++ -+...|.|++|+.|...|++|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 34667778899999999999999999999999999887655433 4788999999999999999999999999
Q ss_pred EEe-CCCCeeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 354 LWN-TDGSLLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 354 iwd-~~~~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
+|. ..|.++..|. .|...|+++.|+.|+..+++++.|.++++.-+.+|+++..+.+|.+.|+...|.+||..+++++.
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 999 4567777776 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCeEEEEEec--CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCC---CCCeEEEEEee
Q 008050 432 DALARVWDLRTGRSILALEG--HVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAH---SNLISQVKFEP 505 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~--~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~---~~~V~~v~~sp 505 (579)
||+|++|+.++.+++.+|+. ...+|+++-.-| +...++++...++|+|.++ .|+.+..+... .+...+.+++|
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecC
Confidence 99999999999999998874 445688888877 6678999999999999998 58888888642 34566678899
Q ss_pred CCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
. |.++.+.+.|+.++.|.+.+|++..++..|+..|..+.-+|..+.|++-+.||.+++|.
T Consensus 448 k-GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 K-GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred C-CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 6 88999999999999999999999999999999999999999999999999999999995
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-33 Score=256.21 Aligned_cols=286 Identities=24% Similarity=0.380 Sum_probs=257.3
Q ss_pred cccCCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-
Q 008050 281 TESGDDRPLSGCSYSH---DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN- 356 (579)
Q Consensus 281 ~~~gh~~~I~~~~~sp---dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd- 356 (579)
+..||+++|..++||| +|-+|++++.||.-.+-+-+++.-+.+|.+|.+.|++.+.+.+...-++++.|-+-++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3468999999999985 889999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 357 TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 357 ~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
+.+..+..+. |+.-|..++|+.+.++|++|+.+..+++||++..+ ....+.+|.+.|..+.|....+.|+++..|+.|
T Consensus 89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 6776666654 78889999999999999999999999999998753 445677999999999999988899999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
++||.++++.+.++. ...+|+++.++++|++|.++ ..+.|.+||..+...++.+... ..|.+..++|+ ..++++|+
T Consensus 168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~-k~~fVaGg 243 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPK-KEFFVAGG 243 (334)
T ss_pred EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCC-CceEEecC
Confidence 999999999999987 45569999999999877665 4567999999999999888764 56888999997 58899999
Q ss_pred CCCEEEEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 516 YDMTVKVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.|+.++.||..++..+..+ ++|.++|.++.|+|+|..-++||.||+|++|....++
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999999886 8999999999999999999999999999999987654
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=252.59 Aligned_cols=278 Identities=27% Similarity=0.464 Sum_probs=238.1
Q ss_pred eEEEEcCC-CCEEEEEe-------cCCeEEEEeCCCCeeEEEEe--CCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeC-
Q 008050 290 SGCSYSHD-GNLLATSS-------LSGVVKIWSMPRLQKFSALK--GHTERATDVTFSPVS-NHVATSSADRTARLWNT- 357 (579)
Q Consensus 290 ~~~~~spd-g~~latgs-------~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~- 357 (579)
.++.|||- .++|+++. ..|.+.|.++...+-+..+. .-.+.+..++|+++. +.+++++.||+++|||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778883 33444432 37899999987555444433 256789999999864 67889999999999993
Q ss_pred -CCCeeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 008050 358 -DGSLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCGLDAL 434 (579)
Q Consensus 358 -~~~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~ 434 (579)
..+++..++.|..+|.++.|++. +..+++++.|++|++|+....+.+.++.+|...|+...|+| ..+++++++.||+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 45788999999999999999985 45788889999999999999999999999999999999999 6779999999999
Q ss_pred EEEEeCCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 435 ARVWDLRTGRSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 435 I~iwd~~~~~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
+++||++.......+..|...|.++.|+. +.+.|+||+.|+.|++||+++. .++..+.+|.-.|..++|+|....+|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999997655555899999999999998 7789999999999999999984 578888999999999999999889999
Q ss_pred EEECCCEEEEEECCCC-eEEEEecCCCCcEEEEEEcC-CCCEEEEEEcCCeEEEEEc
Q 008050 513 TGSYDMTVKVWSGRDF-KLVKSLSGHEAKVTSLDIHP-DEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~iW~~ 567 (579)
++++|-+++|||.... ..+.+...|+.-|..++||. ++.++++++.|+.++||+.
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999998744 46667778888999999998 6778999999999999984
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=285.93 Aligned_cols=284 Identities=25% Similarity=0.421 Sum_probs=257.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLN 363 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~ 363 (579)
.+..|.+++|+|...+++++-.+|.|++||..-+.++..|..|.++|..++|+|++.+|++|+.|-.|++|+.. .+++.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999965 46888
Q ss_pred EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
++.+|.+.|..+.||+.-.+++++|.|.+|+||+..+++++....||+..|.|..|||...++++++.|.+|+|||+..-
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999998521
Q ss_pred e-----------------------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEe
Q 008050 444 R-----------------------------SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK--SLYVIP 492 (579)
Q Consensus 444 ~-----------------------------~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~--~~~~~~ 492 (579)
+ ....+.+|...|+-++|+|.-..|++|+.|..|++|.+...+ .+.+..
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcr 247 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCR 247 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhh
Confidence 0 123467899999999999999999999999999999987544 345677
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+|.+.|+++-|+|. ..++++.|.|++|+|||+...+.+.+++...+..+.++.+|..++++.|- |+-+.+|.+...
T Consensus 248 gH~nnVssvlfhp~-q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPH-QDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred cccCCcceEEecCc-cceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEccc
Confidence 89999999999995 88999999999999999999999999988888999999999998777665 555788877643
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=285.78 Aligned_cols=249 Identities=35% Similarity=0.621 Sum_probs=226.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-C--eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC-CCCc
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDG-S--LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV-DTGV 402 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~--~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~-~~~~ 402 (579)
|...|.++.|+++|.+|++++.++.+++|+... + ....+.+|...|.+++|+|+++++++++.|++|++||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 478899999999999999999999999999633 3 46667899999999999999999999999999999999 5568
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 403 ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
.+.++.+|...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|...|++++|+++|.+|++++.|+.|+|||+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--eeEEEeCCCCC--eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCc---EEEEEEcCCCCEEEE
Q 008050 483 RKRK--SLYVIPAHSNL--ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAK---VTSLDIHPDEQSIAT 555 (579)
Q Consensus 483 ~~~~--~~~~~~~~~~~--V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~---V~~l~~s~dg~~L~s 555 (579)
.++. ++..+..+... +++++|+|+ +.++++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s 396 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYS 396 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCC-CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEE
Confidence 9998 56777766555 999999996 889999999999999999999999999998875 344455779999999
Q ss_pred EEcCCeEEEEEcCCCCccccc
Q 008050 556 VSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 556 ~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
|+.|+.|++|++.++.....+
T Consensus 397 g~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 397 GSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred EeCCceEEEEeCCccchhhhh
Confidence 999999999999987665544
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=246.20 Aligned_cols=252 Identities=25% Similarity=0.386 Sum_probs=228.7
Q ss_pred eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 008050 320 KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV 398 (579)
Q Consensus 320 ~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~ 398 (579)
....+..|.+.|..+.|+-+|+|.++++.|.+|++|+ ..+..++++.+|...|..++.+.++..|++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 4456788999999999999999999999999999999 788899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008050 399 DTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG--RSILALEGHVKPVLGISFSPNGYHLATGGEDNT 476 (579)
Q Consensus 399 ~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~ 476 (579)
++|+....+.+|...|+.+.|+.+...+++|+.|..+++||.|+. ++++.+......|.+|..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999875 6788888888889999885 568999999999
Q ss_pred EEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcE--EEEEEcCCCCEEE
Q 008050 477 CRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKV--TSLDIHPDEQSIA 554 (579)
Q Consensus 477 I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~s~dg~~L~ 554 (579)
++.||+|.|+....+-+ .+|++++|+++ +++.++++.|+++++.|-.+|+++..+++|.+.- ..++++.....++
T Consensus 167 vRtydiR~G~l~sDy~g--~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFG--HPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred EEEEEeecceeehhhcC--CcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 99999999987665544 57999999997 7788889999999999999999999999998754 4556777788999
Q ss_pred EEEcCCeEEEEEcCCCCccccc
Q 008050 555 TVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+|+.||.|++||+.+......+
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eccCCceEEEEEeccceeeeee
Confidence 9999999999999887766544
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.2e-31 Score=283.13 Aligned_cols=280 Identities=27% Similarity=0.487 Sum_probs=257.1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEE-EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCe
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA-LKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSL 361 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~ 361 (579)
.|...+.+..|+ ..++++++.+++|++|+..++..+.. +.+|.+.|.+++|..-+++|++|+.|.++++|| ..+.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 367788888888 67899999999999999999999988 999999999999998889999999999999999 56789
Q ss_pred eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 362 LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
...+.+|.+.|.++... ..++++|+.|.+|++|++.++..+.++.+|...|.++.++ +.++++|+.||+|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999988875 5578889999999999999999999998999999999998 7799999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 442 TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 442 ~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
+++++.++.+|...|+++.+... .++++|+.|++|++||+++. +++.++..|...+..+.+. +++|++++.||+|
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTI 435 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc---cceeEeccccccE
Confidence 99999999999999999988765 79999999999999999999 9999999999999777765 6789999999999
Q ss_pred EEEECCCCeEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 521 KVWSGRDFKLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 521 ~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
++||..+++++..+.+ |.+.|+.+++. ...+++++.||++++||++++.....
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 9999999999999998 67889999886 46788999999999999999887654
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=266.21 Aligned_cols=295 Identities=25% Similarity=0.374 Sum_probs=240.6
Q ss_pred EEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe----eEEEEe-CCCCCeEEEEEccCCCEEEEEeCCC
Q 008050 276 LYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ----KFSALK-GHTERATDVTFSPVSNHVATSSADR 350 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~----~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg 350 (579)
......+.+|+..|+++++.|.|-.|++|+.|..|++||+.... ..+.+. .....|.++.|++.|+.|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 33445667899999999999999999999999999999987532 223332 3455799999999999999999999
Q ss_pred cEEEEeCCCCeeEEE-------------ecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEE-EEEe-----cC
Q 008050 351 TARLWNTDGSLLNTF-------------QGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVEL-LLQE-----GH 410 (579)
Q Consensus 351 ~I~iwd~~~~~~~~~-------------~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~-~~~~-----~~ 410 (579)
..+|+|.+|..+..+ ++|...++|.+|||..+ .|++++.||++++||++..+.. .++. +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999888654433 57999999999999765 8999999999999999875432 2221 33
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 008050 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR---SILALEGHVK--PVLGISFSPNGYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~---~~~~~~~~~~--~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
.-.+++++|++||.+|++|+.||.|.+|+.++.. ....-+.|.. .|+||.||++|++|++-+.|+++++||++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 3468899999999999999999999999986542 2333456766 8999999999999999999999999999975
Q ss_pred -ceeEEEeC--CCCCeEEEEEeeCCCeEEEEEEC------CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE
Q 008050 486 -KSLYVIPA--HSNLISQVKFEPQEGYFLVTGSY------DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 486 -~~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 556 (579)
+++....+ ....-+.++|+|+ ..+|++|.. .|++.+||..+...+..+......|..+.|+|.-+.|+.|
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd-~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPD-DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCC-ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 45554443 2344678999997 788888853 4789999999999999998888889999999998899999
Q ss_pred EcCCeEEEEEcCCCC
Q 008050 557 SHDRWIKLWSTRNKG 571 (579)
Q Consensus 557 s~Dg~I~iW~~~~~~ 571 (579)
+.||++++|--.+..
T Consensus 476 sgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 476 SGDGTAHVYYDPNES 490 (641)
T ss_pred cCCCceEEEECcccc
Confidence 999999998655543
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-30 Score=257.60 Aligned_cols=253 Identities=36% Similarity=0.617 Sum_probs=230.0
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~ 400 (579)
..+.+|.+.|.+++|++++++|++++.||.|++|+... .....+..|...+..+.|++++++|++++.+|.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999654 46677888999999999999999999999999999999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008050 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIW 480 (579)
Q Consensus 401 ~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iw 480 (579)
++....+..|...+.++.|++++.++++++.+|.|.+||+++++....+..|...|.+++|++++.++++++.||.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998899988889999999999999999999999999999999999999988889999999
Q ss_pred ECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 481 DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 481 Dl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
|+++++.+..+..|...+.++.|+++ +..+++++.+|.|++||+..++.+..+..|...+.++.|++++.++++++.||
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999889999999996 66777778899999999999999999988999999999999988888888899
Q ss_pred eEEEEEcCCCCcccc
Q 008050 561 WIKLWSTRNKGDEHA 575 (579)
Q Consensus 561 ~I~iW~~~~~~~~~~ 575 (579)
.|++|++.+++....
T Consensus 242 ~i~i~~~~~~~~~~~ 256 (289)
T cd00200 242 TIRVWDLRTGECVQT 256 (289)
T ss_pred cEEEEEcCCceeEEE
Confidence 999999987655443
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-32 Score=254.41 Aligned_cols=290 Identities=24% Similarity=0.403 Sum_probs=245.7
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC------------------CeeEEEEeCCCCCeEEEEEccCC
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR------------------LQKFSALKGHTERATDVTFSPVS 340 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~------------------~~~~~~l~~h~~~V~~l~~sp~~ 340 (579)
.+.+..|..++.+.+||+||.++++|+.|..|+|+|++. .-.++++..|.+.|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345668999999999999999999999999999999861 12467788899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCe---eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCe
Q 008050 341 NHVATSSADRTARLWNTDGSL---LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ---EGHSRSV 414 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~~~~~---~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~---~~~~~~V 414 (579)
.+|++|+.|++|++||+.... -.........|.++.|||.|.+|++|....++++||+++.++...- ..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999965422 1222334568999999999999999999999999999998876643 4688999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 008050 415 YGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHV-KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP 492 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~ 492 (579)
+++.+++.|++.++|+.||.|++||--+++++.++. .|. ..|.+..|..||+||++.+.|..+++|.+.+++++..+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 999999999999999999999999999999998875 444 359999999999999999999999999999999999887
Q ss_pred CCC-----CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 493 AHS-----NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 493 ~~~-----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
+-. ..-+...|+....+.|.---..+.+.-||.++...+..+ -+|++.+..+.-||.+.-+++|+.|..+++|-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 631 123455677764444544445688999999998766655 48999999999999999999999999999997
Q ss_pred cC
Q 008050 567 TR 568 (579)
Q Consensus 567 ~~ 568 (579)
-+
T Consensus 425 rr 426 (430)
T KOG0640|consen 425 RR 426 (430)
T ss_pred ec
Confidence 54
No 52
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=250.76 Aligned_cols=252 Identities=28% Similarity=0.504 Sum_probs=224.3
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG--SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV 398 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~ 398 (579)
+..+.+|.+.|..+.|+|+|.+|++|+.|..|.+|+..+ +....+++|.+.|..+.|.++++.+++++.|.+|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 345678999999999999999999999999999999655 456778899999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008050 399 DTGVELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 399 ~~~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I 477 (579)
++|+.+..+.+|.+-|+.+.-+.-|. ++.+|+.||++++||+|+...+.++. ....++++.|...+..+++|+-|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 99999999999999999988555444 77788899999999999998888875 34459999999999999999999999
Q ss_pred EEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC----eEEEEecCCCC----cEEEEEEcCC
Q 008050 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----KLVKSLSGHEA----KVTSLDIHPD 549 (579)
Q Consensus 478 ~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~----~V~~l~~s~d 549 (579)
++||++.+..++++.+|...|+.+..+++ +.++.+-+.|.++++||++-+ .++..+.+|.. ....++|+|+
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccC-CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999996 889999999999999998754 45777776543 3567899999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 550 EQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
+..+-.|+.|+.+++||........
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~ly 302 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILY 302 (338)
T ss_pred CCccccccccceEEEeecccccEEE
Confidence 9999999999999999998765443
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=9.2e-32 Score=262.04 Aligned_cols=281 Identities=25% Similarity=0.404 Sum_probs=248.9
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ--KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
.+..|.+.+..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.+++.++++++.|+.+++|+.+
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 445789999999999999999999999999999987665 777888899999999999999999999999999999965
Q ss_pred C-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 359 G-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 359 ~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
. ....++.+|.+.|+++.|......+++|+.|.+|++||+....+..... ....+..|..+ ...+++|..|+.|++
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRF 326 (459)
T ss_pred chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEE
Confidence 4 6778999999999999999888779999999999999999877766553 23445566665 558999999999999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC----CCCeEEEEEeeCCCeEEEE
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH----SNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~----~~~V~~v~~sp~~~~~l~s 513 (579)
||+++.........+. .|+++..+.+|..|.+++.|.++.++|+++......+.+. ....+.+.|+|+ +.|+++
T Consensus 327 wD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd-~~YvaA 404 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD-GSYVAA 404 (459)
T ss_pred EeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC-Cceeee
Confidence 9999999999988776 7999999999999999999999999999999888877653 234788999996 889999
Q ss_pred EECCCEEEEEECCCCeEEEEecCCCC--cEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 514 GSYDMTVKVWSGRDFKLVKSLSGHEA--KVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
||.||.|+||++.++++...+..... .|+++.|++.|..|++++.++.+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999998876544 499999999999999999999999993
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4e-30 Score=294.13 Aligned_cols=260 Identities=21% Similarity=0.346 Sum_probs=226.3
Q ss_pred CCeEEEEeCCCCeeEEEE-----eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------eeEEEecccCCe
Q 008050 307 SGVVKIWSMPRLQKFSAL-----KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS---------LLNTFQGHLDRL 372 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l-----~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~---------~~~~~~~h~~~I 372 (579)
+|.+++|+..+......+ ..|.+.|.+++|++++++|++|+.||.|+||+.... ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 788999998876665443 358999999999999999999999999999996431 122222 34678
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 008050 373 ARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSILALE 450 (579)
Q Consensus 373 ~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 450 (579)
.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|++++|++ ++.+|++|+.||.|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 478999999999999999999999989999999999999997 78899999999999999999999988887
Q ss_pred cCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC-
Q 008050 451 GHVKPVLGISFS-PNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD- 527 (579)
Q Consensus 451 ~~~~~I~si~~s-p~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~- 527 (579)
.+ ..|.++.|+ ++|.+|++|+.||.|++||+++.+ .+..+.+|...|.++.|.. +.+|++++.|+.|++||+..
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCC
Confidence 55 579999995 579999999999999999998765 5677889999999999973 67899999999999999874
Q ss_pred -----CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 528 -----FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 528 -----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+.++..+.+|...+..++|++++.+|++|+.||.|++|+....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 4678889999999999999999999999999999999997654
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-31 Score=270.24 Aligned_cols=277 Identities=25% Similarity=0.429 Sum_probs=246.2
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEec
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQG 367 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~ 367 (579)
.+-+.|+ ..+.|++|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||. +.+.+..+.+
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 3446688 456777775 568999999998877766666899999999999999999999999999994 4466777777
Q ss_pred -ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE
Q 008050 368 -HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS 445 (579)
Q Consensus 368 -h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~ 445 (579)
|...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.+.|||......
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999998 77899999999999999998766555 778999999999999999999999999999999988899
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEe--CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEE
Q 008050 446 ILALEGHVKPVLGISFSP-NGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVK 521 (579)
Q Consensus 446 ~~~~~~~~~~I~si~~sp-~g~~l~tgs--~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~ 521 (579)
...+..|...|..++|+| ....||+|+ .|++|++||..++..+..+.. .+.|+++.|++....++.+.+ .++.|.
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 999999999999999999 567888876 799999999999999988876 478999999998666666654 478899
Q ss_pred EEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 522 VWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 522 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
||+..+.+.+..+.+|...|..++++|||..|++|+.|.++++|++-..
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999999999999998663
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.5e-31 Score=269.10 Aligned_cols=255 Identities=22% Similarity=0.432 Sum_probs=237.2
Q ss_pred EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 008050 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG 401 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~ 401 (579)
.+..++..|.++.|+|...+++++-.+|.|.|||.+. ..+..+.-...+|.+..|-.-.+.+++|+.|..|++|+.+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 4456899999999999999999999999999999665 567788888899999999999999999999999999999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 008050 402 VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRI 479 (579)
Q Consensus 402 ~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~i 479 (579)
+.+..+..|..-|.|++.||...++++++.|-.|++||...+ .+.++|.+|..-|.+++|+| |.+.+++++-|++|+|
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 999999999999999999999999999999999999999865 67889999999999999999 6789999999999999
Q ss_pred EECCCCceeEEEeCCCCCeEEEEEeeCC-CeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 480 WDLRKRKSLYVIPAHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 480 wDl~~~~~~~~~~~~~~~V~~v~~sp~~-~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
|.+.+..+..++.+|...|+++.|-+.+ .-+|++|+.|.+|+|||..+..|+.++.||...|..+.|+|.-..|++||.
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence 9999999999999999999999998742 349999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCcccccc
Q 008050 559 DRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 559 Dg~I~iW~~~~~~~~~~~~ 577 (579)
||+++||+..+-+++..++
T Consensus 248 DGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred CccEEEecCcceehhhhhh
Confidence 9999999998877776554
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.7e-30 Score=237.47 Aligned_cols=286 Identities=19% Similarity=0.325 Sum_probs=251.6
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEE--EeCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA--LKGHTERATDVTFSP-VSNHVATSSADRTARLWN 356 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd 356 (579)
....+|...|.+++|+.+|..|++|+.|+++.+|++........ ..+|.+.|-.++|+| +.+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 34557888999999999999999999999999999988755543 468999999999998 457899999999999999
Q ss_pred -CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 357 -TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 357 -~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
..+++........+.| -+.|+|+|.++++++.|..|.+.|.++.+..... .....+..++|+.++.+++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecCCceE
Confidence 5567777766555554 5789999999999999999999999887766554 345568889999888888888888999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
.|.....-+.+..++.|.....||.|+|+|++|++|+.|..+.+||+...-++..+.-+.-+|..+.|+.+ |++|+++|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d-g~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD-GRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC-cceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC---------CeEEEEEcCC
Q 008050 516 YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD---------RWIKLWSTRN 569 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---------g~I~iW~~~~ 569 (579)
.|..|-|=++.+|..+..+. +.++...++|+|...+|+-++.| |.+++|-+.+
T Consensus 251 EDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 99999999999999999887 78889999999999999877754 6788887654
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.7e-31 Score=279.27 Aligned_cols=293 Identities=22% Similarity=0.389 Sum_probs=226.8
Q ss_pred hcceEEeeeccc-CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEE-------------Ec
Q 008050 272 KVESLYLDCTES-GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVT-------------FS 337 (579)
Q Consensus 272 ~~~~~~l~~~~~-gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~-------------~s 337 (579)
.+..+....... .|.+.|.++.||+||+|||+|+.||.|+||.+...+.... +.+.-.++. -+
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~~~s~~~p~~s~ 328 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYNANSQIEPSTSS 328 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc---cccccchhhhhhhhccccCccccc
Confidence 344444444444 8999999999999999999999999999999866333111 111111111 11
Q ss_pred c---CCC--EEEEEeCCCcEEE----EeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 008050 338 P---VSN--HVATSSADRTARL----WNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408 (579)
Q Consensus 338 p---~~~--~l~s~s~dg~I~i----wd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~ 408 (579)
. .+. ..-.+.....+.+ +-+..+++..+.+|.+.|..+.|+.++ +|++++.|.+|+||++....++..+
T Consensus 329 ~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F- 406 (712)
T KOG0283|consen 329 EEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF- 406 (712)
T ss_pred cccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-
Confidence 1 001 1111222222222 224567888999999999999999655 8999999999999999999999988
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 008050 409 GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS 487 (579)
Q Consensus 409 ~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~ 487 (579)
.|..-|+|++|+| |.++|++|+.||.|+||++...+.+.-...+ .-|+++||.|+|++.++|+.+|.+++|+....+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 6999999999999 8889999999999999999877766655544 6699999999999999999999999999987776
Q ss_pred eEEEeC--C------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCC--cEEEEEEcCCCCEEEEEE
Q 008050 488 LYVIPA--H------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA--KVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 488 ~~~~~~--~------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~s~dg~~L~s~s 557 (579)
...+.. | ...|+.+.|.|....-+++.+.|..|+|||.++..++..|+|+.. .-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 654432 1 237999999986665567778999999999999999988887543 235678999999999999
Q ss_pred cCCeEEEEEcCCC
Q 008050 558 HDRWIKLWSTRNK 570 (579)
Q Consensus 558 ~Dg~I~iW~~~~~ 570 (579)
.|..|+||++...
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998543
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=7.5e-32 Score=258.67 Aligned_cols=289 Identities=21% Similarity=0.343 Sum_probs=247.0
Q ss_pred eeecccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 278 LDCTESGDDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
..+.+.||..+|.|++=+|+. ..+++|+.||.|+|||+.+..++.++.+|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 445678999999999999987 8899999999999999999999999999999999999986 7789999999999999
Q ss_pred CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeE
Q 008050 357 TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG-SLAASCGLDALA 435 (579)
Q Consensus 357 ~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg-~~l~sg~~dg~I 435 (579)
+++....++.+ .+.+..+.-+..+..+++++. .|.|||......+..+.-....|.++.|+|-. .+|++|+.|+.|
T Consensus 136 ~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 136 IDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred ccCCcceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 98877766654 345677777777778888764 58999999888888888777889999999954 577888899999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
.+||++++.++..+... ..-+.|+|+|.+..|++|++|..++.||++.. .++.....|.+.|.++.|+|. |.-|++|
T Consensus 213 vLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt-G~Efvsg 290 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT-GQEFVSG 290 (433)
T ss_pred EEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC-cchhccc
Confidence 99999999887766432 33678999999999999999999999999974 567788899999999999997 7889999
Q ss_pred ECCCEEEEEECCCCeEEEEec-CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 515 SYDMTVKVWSGRDFKLVKSLS-GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 515 s~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
|+|.+|+||..+.+..-..+. .....|.++.||.|.+|+++||.|+.|++|..+-.+..
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999999988776443332 12346999999999999999999999999997654433
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.8e-29 Score=237.32 Aligned_cols=282 Identities=23% Similarity=0.331 Sum_probs=244.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC--CCcEEEEe-CCCC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA--DRTARLWN-TDGS 360 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~--dg~I~iwd-~~~~ 360 (579)
.....|+++.|+.+|.+|++++.|..++|||..+++..+++..+.-.|..++|....+.++.++. |.+|+..+ .+.+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 35778999999999999999999999999999999999999988889999999888888877777 88999999 5668
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+.....+ .++|.|.|-++|++.....|++||+
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEe
Confidence 89999999999999999999999999999999999999987776665444333 4789999999999988889999999
Q ss_pred CCC--eEEEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCe---EEEEEeeCCCeEEE
Q 008050 441 RTG--RSILALE---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI---SQVKFEPQEGYFLV 512 (579)
Q Consensus 441 ~~~--~~~~~~~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V---~~v~~sp~~~~~l~ 512 (579)
|+. .+..++. ......+.|.|++||++|+.++..+.+++.|.-+|..+.++..+.+.- ...+|.|+ +++++
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd-s~Fvl 248 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD-SKFVL 248 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC-CcEEE
Confidence 974 3344443 335678999999999999999999999999999999999888765432 56889997 88999
Q ss_pred EEECCCEEEEEECCCCeEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+|+.||+|.+|+++++..+..+.+ +.+.+.++.|+|.-.+++++ +..+.+|=....
T Consensus 249 ~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 249 SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred EecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 999999999999999999999988 78999999999987666665 567888876544
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.2e-30 Score=276.78 Aligned_cols=292 Identities=23% Similarity=0.343 Sum_probs=251.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe--cCCeEEEEeCCC------------CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSS--LSGVVKIWSMPR------------LQKFSALKGHTERATDVTFSPVSNHVATSSAD 349 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs--~dg~I~iwd~~~------------~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d 349 (579)
+++..|.+++.+|||..++||+ .||.+.||+... .+.+.++..|.+.|+|+.|++||.+||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456799999999999999999 899999998642 23456677899999999999999999999999
Q ss_pred CcEEEEeCCC-------------------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Q 008050 350 RTARLWNTDG-------------------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH 410 (579)
Q Consensus 350 g~I~iwd~~~-------------------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~ 410 (579)
+.|.||.... +.+..+.+|...|..++|+|++.+|++++.|++|.+||..+.+.+..+.+|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999999551 256678899999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC------CCeEEEEEcCCCCEEEEEe----CCCcEEEE
Q 008050 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV------KPVLGISFSPNGYHLATGG----EDNTCRIW 480 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~------~~I~si~~sp~g~~l~tgs----~Dg~I~iw 480 (579)
.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+..+. .-+..+.|||||.+|++.. .-.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 9999999999999999999999999999987766666655432 2478899999999999875 23478999
Q ss_pred ECCCCceeEEEeCCCCCeEEEEEeeC-----C-------C----eEEEEEECCCEEEEEECCCCeEEEEec-CCCCcEEE
Q 008050 481 DLRKRKSLYVIPAHSNLISQVKFEPQ-----E-------G----YFLVTGSYDMTVKVWSGRDFKLVKSLS-GHEAKVTS 543 (579)
Q Consensus 481 Dl~~~~~~~~~~~~~~~V~~v~~sp~-----~-------~----~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~ 543 (579)
+-.+.+.-..+-+|..++.++.|+|. . . .++++|+.|++|.||.....+++.... -....|.+
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 98888888899999999999999872 0 1 167899999999999987777765553 23567999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
++|+|||-.|+.+|.||+|.++.+..++....
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEKELGVA 362 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence 99999999999999999999999987655443
No 62
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=244.80 Aligned_cols=294 Identities=23% Similarity=0.412 Sum_probs=257.0
Q ss_pred eEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
.+.+...+.||...|..++-......+.+++.|.+.+||.++++.++.++.||.+.|++|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56777888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EeC--C-----------------------------------C----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeE
Q 008050 355 WNT--D-----------------------------------G----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTW 393 (579)
Q Consensus 355 wd~--~-----------------------------------~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I 393 (579)
|.. + + .++..+.+|.+.|.+..|...|+.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 961 0 0 1345678899999999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 394 RLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 394 ~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs 472 (579)
.+||++++..+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|++|...|+++.|.-+. .+++|+
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS 375 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS 375 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC
Confidence 99999999999999999999999999999999999999999999999854 4677899999999999998654 689999
Q ss_pred CCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE----EecCCCCcEEEEEEc
Q 008050 473 EDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK----SLSGHEAKVTSLDIH 547 (579)
Q Consensus 473 ~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~----~l~~h~~~V~~l~~s 547 (579)
.|.+|+|||+++.+ ++.++.. .+.++.++++. ++.+|+.--.+..|++||++...+-. .-.+|..-|+|++|.
T Consensus 376 DDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred CCceEEEeeeccccCcceeeec-CCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence 99999999999854 5666665 57788899987 46788888888999999987544322 235798999999998
Q ss_pred CCC--CEEEEEEcCCeEEEEEcCCCC
Q 008050 548 PDE--QSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 548 ~dg--~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.+. .-|++||.|+.+.-|+++...
T Consensus 454 eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 454 EEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ccCcccccccccccceeeeeEecccC
Confidence 653 348999999999999998654
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.8e-31 Score=264.89 Aligned_cols=257 Identities=24% Similarity=0.466 Sum_probs=224.5
Q ss_pred CeeEEEEeCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeC--CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEE
Q 008050 318 LQKFSALKGHTERATDVTFSP-VSNHVATSSADRTARLWNT--DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWR 394 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~--~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~ 394 (579)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++ +++++.++.+|...|..++|+.+|..|++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 355677889999999999999 8889999999999999993 4789999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDG-SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473 (579)
Q Consensus 395 lwd~~~~~~~~~~~~~~~~V~~l~~spdg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~ 473 (579)
+||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+|+++.+..+..|-+.|..+.|-++|.++++.+.
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999998874 34578999999988 79999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC---eEEEEecCCC--CcEEEEEEc
Q 008050 474 DNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF---KLVKSLSGHE--AKVTSLDIH 547 (579)
Q Consensus 474 Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~---~~~~~l~~h~--~~V~~l~~s 547 (579)
|++++||+.+..-.+..+. .+.....++..+|. +.++++-+.|+.|.+|.+... ..-..+.+|. +.-..+.||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCC-CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 9999999998876665443 23345677889995 889999999999999986532 2334566775 446788999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 548 PDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 548 ~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
|||.+|++|+.||.+.+||.++-+....+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 99999999999999999999887665443
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.9e-32 Score=256.43 Aligned_cols=233 Identities=22% Similarity=0.417 Sum_probs=210.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL 405 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~ 405 (579)
....|.|+.+. ...+++|..|++|+|||.+. .++..+.+|.+.|.|+.|. .+.+++|+.|.+|++||+++++.+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45679999985 57899999999999999655 6778899999999999986 6699999999999999999999999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS---ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
++.+|...|..+.|+.. ++++++.|..+.+||+.+... ...+.+|...|+.+.|+ .++|++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 99999999999999844 999999999999999987653 34567899999999995 459999999999999999
Q ss_pred CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeE
Q 008050 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWI 562 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I 562 (579)
.++..+.++.+|...|.|+.+. +.++++|+.|++|++||+..|.++..+.||+.-|.++.|. .+.|++|+.||+|
T Consensus 348 st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 9999999999999999888875 7899999999999999999999999999999999999996 6789999999999
Q ss_pred EEEEcCCCCc
Q 008050 563 KLWSTRNKGD 572 (579)
Q Consensus 563 ~iW~~~~~~~ 572 (579)
++||+..+..
T Consensus 423 kvWdl~aald 432 (499)
T KOG0281|consen 423 KVWDLQAALD 432 (499)
T ss_pred EEEecccccC
Confidence 9999987543
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.4e-29 Score=229.70 Aligned_cols=243 Identities=25% Similarity=0.438 Sum_probs=212.9
Q ss_pred eeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC-Ce---eEEE-ecccCCeEEEEEecCCCEEEEEeCCCe
Q 008050 319 QKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTDG-SL---LNTF-QGHLDRLARMAFHPSGKYLGTTSFDKT 392 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~-~~---~~~~-~~h~~~I~~l~~sp~~~~l~s~s~dg~ 392 (579)
..+..+.+|.+.+..++|+|. |..|++|+.|+.|++|+..+ .. ...+ .+|+..|.+++|+|.|++|+++++|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 456678899999999999998 88999999999999999773 21 1122 369999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCeEEEEEcCCCCE
Q 008050 393 WRLWDVDTG--VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG---RSILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 393 I~lwd~~~~--~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
+.||.-..+ +++..++||...|.|++|+++|++|++++.|..|.||.+..+ .++..++.|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999987654 667788999999999999999999999999999999998754 577888999999999999999999
Q ss_pred EEEEeCCCcEEEEECC---CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-cCCCCcEEE
Q 008050 468 LATGGEDNTCRIWDLR---KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHEAKVTS 543 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~---~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~ 543 (579)
|++++.|++|++|+-. ...++.++.+|.+.|.++.|++. |..|++++.|++++||-..+ .+ ..|+..+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeecc-----CcchhcccceEe
Confidence 9999999999999765 35689999999999999999996 78899999999999998652 22 247788999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
+.|. ...|++++.|+.|++|.-..
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC
Confidence 9998 45799999999999998764
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=219.46 Aligned_cols=284 Identities=25% Similarity=0.396 Sum_probs=240.2
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe---------------eEEEEeCCCCCeEEEEEccCCCEEEEEe
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ---------------KFSALKGHTERATDVTFSPVSNHVATSS 347 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~---------------~~~~l~~h~~~V~~l~~sp~~~~l~s~s 347 (579)
..+...|.+++|+|.|.+.++|+...+++|....... ..+.-+.|.+.|.|.+|+|+|.+|++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 3467789999999999999999999999988654211 1223356899999999999999999999
Q ss_pred CCCcEEEEeCCCC------eeEEEecccCCeEEEEEecC----CCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCeEE
Q 008050 348 ADRTARLWNTDGS------LLNTFQGHLDRLARMAFHPS----GKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRSVYG 416 (579)
Q Consensus 348 ~dg~I~iwd~~~~------~~~~~~~h~~~I~~l~~sp~----~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~V~~ 416 (579)
.|++|++.-++.. .-..+.-|.+.|..++|..+ +..|++++ .|..|++-|..+|+....+.+|.+.|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 9999999875442 33467789999999999653 34666655 4778999999999999999999999887
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec--C-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 008050 417 IAFHPDGSLAASCGLDALARVWDLRTGRSILALEG--H-----VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 417 l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~-----~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
+ ++-+|-++++|+.|.+|++||++-..++.++.. | ...|.++++.|.|++|++|..|....+||++.++.+.
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 6 334677999999999999999999888877642 2 3569999999999999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC----eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 490 VIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
.+..|...|.++.|+| +..|++++++|..|++-|+..- -.+.....|..++..+.|+|..-.+++.+.|.++.+|
T Consensus 268 ~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 9999999999999999 5899999999999999997632 1233455799999999999998889999999999999
Q ss_pred EcC
Q 008050 566 STR 568 (579)
Q Consensus 566 ~~~ 568 (579)
.++
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 875
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=252.19 Aligned_cols=252 Identities=25% Similarity=0.422 Sum_probs=226.0
Q ss_pred eEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK-GHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
.+.+..++.||..+|..+.||||.++|++++.+..+.+||+.++.....+. +|...+.+++|.|||..+++|+.|+.+.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 377889999999999999999999999999999999999999999888775 4578999999999999999999999999
Q ss_pred EEeCCCCeeEEEeccc-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 354 LWNTDGSLLNTFQGHL-DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 354 iwd~~~~~~~~~~~h~-~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
.|+.+|+.+...++.. ..|.++++.+||+++++.+.|..|++|+.++........ ...+|++++++.|++++++.-.+
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEccc
Confidence 9999998887777654 568999999999999999999999999998876654433 34579999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEEecCCCC--eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCe
Q 008050 433 ALARVWDLRTGRSILALEGHVKP--VLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGY 509 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~--I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~ 509 (579)
..+++||+...+.+..+.+|... |..-||.- +..++++|++|+.|+||+..+++++..+.+|...|++++|+|.+..
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 99999999988888888888754 44556655 5589999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCEEEEEECCC
Q 008050 510 FLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~ 527 (579)
+++++|.||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 999999999999997653
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=250.92 Aligned_cols=280 Identities=20% Similarity=0.325 Sum_probs=241.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNT 364 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~ 364 (579)
...|++++|||...+=++....-.+.||+..+.....++......|.+++|..||.+|+.|...|.|+|||.+. ..+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 46899999999765433333356799999998888888877889999999999999999999999999999554 35678
Q ss_pred EecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q 008050 365 FQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD-GSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~ 442 (579)
+..|..++..+.|+|.++ .|++|+.|+.+++||+.+........+|.+.|.|.+|+|- +.++++|+.||.|++||+++
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 899999999999999665 6778888899999999999876688899999999999994 55999999999999999998
Q ss_pred C-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 443 G-RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 443 ~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
. ..+.++. |..+|.++.+-|.|..|++++. +.|+|||+-+|. .+..+..|...|+|+++..+ +..|++|+-|+.|
T Consensus 186 ~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~-~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 186 LTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD-STRLLSGSLDRHV 262 (487)
T ss_pred CCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecC-CceEeecccccce
Confidence 7 5666665 8899999999999999999875 579999998654 44555559999999999986 6889999999999
Q ss_pred EEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 521 KVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 521 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
++||+.+++.+..+. -.++|.+++++|+++.++.|..||.+.+-+...
T Consensus 263 KVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 263 KVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999999999987 567899999999999999999999887775443
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.8e-29 Score=244.85 Aligned_cols=284 Identities=23% Similarity=0.375 Sum_probs=242.0
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE----E-------------E-eCCCCCeEEEEEccCCC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS----A-------------L-KGHTERATDVTFSPVSN 341 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~----~-------------l-~~h~~~V~~l~~sp~~~ 341 (579)
.....|..+|.||++++++.++++++.+|+|.-|++.+++... . - ++|...|.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4456799999999999999999999999999999988766431 1 0 26888999999999999
Q ss_pred EEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 008050 342 HVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFH 420 (579)
Q Consensus 342 ~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~s 420 (579)
||++|+.|..|.||+.+ .+.+..+.+|.+.|.+++|-...+.|++++.|++|++|+++....+.++.+|.+.|.+|...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999954 47788899999999999999888899999999999999999988888889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-C-----
Q 008050 421 PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-H----- 494 (579)
Q Consensus 421 pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~----- 494 (579)
.-++.+.+|+.|+++++|++ ....-..+.++.+.+-|++|-.+ .+|++|+.+|.|.+|++-+.+++++... |
T Consensus 296 ~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE 373 (479)
T ss_pred cccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence 88889999999999999999 34445667888889999999754 5799999999999999999998887642 2
Q ss_pred ------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC----eEEEEecCCCCcEEEEEEcCCCCEEEEE-EcCCeEE
Q 008050 495 ------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----KLVKSLSGHEAKVTSLDIHPDEQSIATV-SHDRWIK 563 (579)
Q Consensus 495 ------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~ 563 (579)
..+|++++..+ +..++++|+.+|.|++|-+..+ .++..+. -.+.|++++|+.+|++|++| +....+-
T Consensus 374 ~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred ccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 12789999999 4889999999999999988766 4566665 56789999999999976655 4444444
Q ss_pred EEEc
Q 008050 564 LWST 567 (579)
Q Consensus 564 iW~~ 567 (579)
=|-.
T Consensus 452 RW~~ 455 (479)
T KOG0299|consen 452 RWWC 455 (479)
T ss_pred eeeE
Confidence 4443
No 70
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.4e-28 Score=257.93 Aligned_cols=261 Identities=20% Similarity=0.286 Sum_probs=207.2
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE-------------EEEeCCCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF-------------SALKGHTERATDVTFSP-VSNHVATSSADRTAR 353 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~-------------~~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~ 353 (579)
.|....+++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.||+|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3445556666655666666666666664433221 24678999999999999 788999999999999
Q ss_pred EEeCCC--------CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 008050 354 LWNTDG--------SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 354 iwd~~~--------~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
+|++.. ..+..+.+|...|.+++|+|++ ++|++++.|++|++||+.++..+..+.+|...|.+++|+++|.
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 999643 2466789999999999999986 6999999999999999999998888889999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-eeEEEeCC-CCC
Q 008050 425 LAASCGLDALARVWDLRTGRSILALEGHVKP-VLGISFSPNGYHLATGG----EDNTCRIWDLRKRK-SLYVIPAH-SNL 497 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-I~si~~sp~g~~l~tgs----~Dg~I~iwDl~~~~-~~~~~~~~-~~~ 497 (579)
+|++++.||.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++.. ++..+..+ ...
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999999988765 45678898877777654 47899999998754 44444333 344
Q ss_pred eEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEecC-CCCcEEEEEEcCC
Q 008050 498 ISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSLSG-HEAKVTSLDIHPD 549 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d 549 (579)
+....|+++ +.+|++++ .||.|++||+.+++++..+.. +..++..++|.|.
T Consensus 262 ~~~~~~d~d-~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 262 LFIPFFDED-TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eEEEEEcCC-CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 556678886 55666665 699999999999987766543 4456788888874
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=7.9e-29 Score=238.39 Aligned_cols=253 Identities=22% Similarity=0.350 Sum_probs=218.7
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~ 399 (579)
+.+|..|...|.+++.+|+.+++++|+.|..-.+|++ ++.....+.+|+..|+++.|+.+|.+|++|+.+|.|.+|...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 4466789999999999999999999999999999994 567788899999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008050 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479 (579)
Q Consensus 400 ~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~i 479 (579)
++.....+......+.-+.|||-+.+|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99888887766778889999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EECCCCceeEEEeC------CC--------------------------CCe-------------------EEEEEeeC--
Q 008050 480 WDLRKRKSLYVIPA------HS--------------------------NLI-------------------SQVKFEPQ-- 506 (579)
Q Consensus 480 wDl~~~~~~~~~~~------~~--------------------------~~V-------------------~~v~~sp~-- 506 (579)
||+.++.+++.+.. +. +.| .++.+.|.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 99999998887751 10 000 01111111
Q ss_pred CCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
.-.+.++|+-||+|.|||+...++.+.+ .|...|+.+.|-+ ..+|++++.||.|+.||.+++.+...
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred ccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence 0236788899999999999887766555 4888899999998 78999999999999999999987654
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-29 Score=264.65 Aligned_cols=252 Identities=25% Similarity=0.453 Sum_probs=229.5
Q ss_pred EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Q 008050 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 324 l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~ 402 (579)
+...+..|..++|+|...+++++-..|.|++||.. +..+..|..|.++|..++|||++.+|++|+.|-.|++|+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456789999999999999999999999999954 56788999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 403 ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
++.++.+|...|..+.||+.-.++++++.|.+|+||+..+++++..+.+|+.-|.|..|+|....++++|-|.+|+|||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCc-----------------------------eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe--EE
Q 008050 483 RKRK-----------------------------SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK--LV 531 (579)
Q Consensus 483 ~~~~-----------------------------~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~--~~ 531 (579)
...+ ..+.+.+|...|+-++|+|. --+|++|+.|..|++|.....+ .+
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccceee
Confidence 4210 12456789999999999996 6799999999999999876543 45
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 532 KSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 532 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
.+..+|.+.|+++-|+|..++|++.|.|++|+|||+......+++
T Consensus 244 DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 677899999999999999999999999999999999988877665
No 73
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=256.92 Aligned_cols=244 Identities=17% Similarity=0.329 Sum_probs=198.9
Q ss_pred EecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCC---------eeEEEecccCCeE
Q 008050 304 SSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTDGS---------LLNTFQGHLDRLA 373 (579)
Q Consensus 304 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~~---------~~~~~~~h~~~I~ 373 (579)
|+.+|.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|+||++... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999999888888899999999999999997 789999999999999996431 3346788999999
Q ss_pred EEEEecCCCE-EEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 008050 374 RMAFHPSGKY-LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGH 452 (579)
Q Consensus 374 ~l~~sp~~~~-l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 452 (579)
+++|+|++.. |++++.|++|++||+.++.....+. |...|.+++|+++|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999876 4689999999999999998776664 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEE-----EEcCCCCEEEEEeCCC----cEEEEECCC-CceeEEEeCCC--CCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 453 VKPVLGI-----SFSPNGYHLATGGEDN----TCRIWDLRK-RKSLYVIPAHS--NLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 453 ~~~I~si-----~~sp~g~~l~tgs~Dg----~I~iwDl~~-~~~~~~~~~~~--~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
.+.+.+. .|++++.+|++++.|+ .|+|||+++ .+++..+..+. +.+. ..|.++.+.++++|+.|+.|
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCCeE
Confidence 8765433 3457888999988764 799999995 55666554332 2222 34556568899999999999
Q ss_pred EEEECCCCeEEEEec--CCCCcEEEEEEcCCC
Q 008050 521 KVWSGRDFKLVKSLS--GHEAKVTSLDIHPDE 550 (579)
Q Consensus 521 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg 550 (579)
++|++..+. +..+. .+..++.+++|.|+.
T Consensus 288 r~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 999997764 22232 256778899999864
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.7e-30 Score=260.45 Aligned_cols=277 Identities=23% Similarity=0.433 Sum_probs=241.8
Q ss_pred EEEEc-CCCCEEEEEecCCeEEEEeCCCCe------eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---C
Q 008050 291 GCSYS-HDGNLLATSSLSGVVKIWSMPRLQ------KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG---S 360 (579)
Q Consensus 291 ~~~~s-pdg~~latgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---~ 360 (579)
.+..+ |+++||++|+.||.|++|++.... .+..+..|.+.|+.+....+++.|+++|.|-+|++|+... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 457789999999999999986433 2567788999999999999999999999999999999432 5
Q ss_pred eeEEEecccCCeEEEEE-ecCCCEEEEEeCCCeEEEEECCCCcE--EE--------EE-ecCCCCeEEEEEcCCCCEEEE
Q 008050 361 LLNTFQGHLDRLARMAF-HPSGKYLGTTSFDKTWRLWDVDTGVE--LL--------LQ-EGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~-sp~~~~l~s~s~dg~I~lwd~~~~~~--~~--------~~-~~~~~~V~~l~~spdg~~l~s 428 (579)
+..++..|.+.|.|+++ -++...+++|+.|+.|.+||++++.. +. .. .++..+|++++.++.|..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 67788999999999999 77888999999999999999998732 11 11 277889999999999999999
Q ss_pred EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCC
Q 008050 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEG 508 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~ 508 (579)
|+..+.+++||.++++.+..+.+|...|..+..+.+|..+++++.||+|++||+...+++.++..|...|.++..+++ -
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s-f 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS-F 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred eEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
..+++|+.||.|+.-|+++......+.....+|..+..+.+.+-+-+++.|+.|+-|...
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 899999999999999999865544555566778888887666666888899999999875
No 75
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=8.7e-28 Score=256.35 Aligned_cols=245 Identities=20% Similarity=0.284 Sum_probs=196.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--------------eEEEecccCCeEEEEEec-CCCEEEEEeCCCeE
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSL--------------LNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTW 393 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~--------------~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I 393 (579)
..|.....++++..+++++.+.....|+..+.. ...+.+|.+.|.+++|+| ++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 345555555565556666666666666643321 124678999999999999 78899999999999
Q ss_pred EEEECCCCc-------EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCC
Q 008050 394 RLWDVDTGV-------ELLLQEGHSRSVYGIAFHPDG-SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG 465 (579)
Q Consensus 394 ~lwd~~~~~-------~~~~~~~~~~~V~~l~~spdg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g 465 (579)
++||+.++. .+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+++|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997652 456678999999999999975 699999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeCCCCC-eEEEEEeeCCCeEEEEE---ECCCEEEEEECCCCe-EEEEecCC-CC
Q 008050 466 YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL-ISQVKFEPQEGYFLVTG---SYDMTVKVWSGRDFK-LVKSLSGH-EA 539 (579)
Q Consensus 466 ~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~-V~~v~~sp~~~~~l~sg---s~dg~I~iwd~~~~~-~~~~l~~h-~~ 539 (579)
.+|++++.|++|+|||+++++.+..+..|.+. +..+.|.++++.++.+| +.|+.|++||+++.. .+.....+ ..
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 99999999999999999999999999888764 45678888755544444 247999999998754 44433333 34
Q ss_pred cEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcc
Q 008050 540 KVTSLDIHPDEQSIATVS-HDRWIKLWSTRNKGDE 573 (579)
Q Consensus 540 ~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~~~~~~ 573 (579)
.+....|++++++|++++ .||.|++|++.++...
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 566677999999999888 5999999999887644
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=239.16 Aligned_cols=252 Identities=21% Similarity=0.358 Sum_probs=225.0
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeE--------EEecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLN--------TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~--------~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
+....+.|..|+|||++|++|+.||.|.+|| .+|+... .+.-+...|.|++|+.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4566788999999999999999999999999 4444322 344577899999999999999999999999999
Q ss_pred ECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 397 DVDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN 475 (579)
Q Consensus 397 d~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg 475 (579)
.+.+|.++..+. .|...|+|+.|+.|+..+++++.|.++++.-+++|+++..|.+|..-|+...|.++|.++++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999998886 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEEeC--CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC---CCCcEEEEEEcCCC
Q 008050 476 TCRIWDLRKRKSLYVIPA--HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG---HEAKVTSLDIHPDE 550 (579)
Q Consensus 476 ~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg 550 (579)
+|++|+.++..|+.+++. ....|+++..-|.+...++.+...++|+|.++. |+.+..+.. ..+...++++||.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 999999999999998875 345788899989888889999999999999974 777777743 34557778899999
Q ss_pred CEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 551 QSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
.++++.+.|+.++.|.+.+++.+..+.+
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~V 477 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPV 477 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeec
Confidence 9999999999999999999998877654
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=9.2e-28 Score=256.58 Aligned_cols=256 Identities=25% Similarity=0.432 Sum_probs=229.4
Q ss_pred cceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 273 VESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 273 ~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
...+.+...+.||.+.|.+++|..-+.+|++|+.|.++++||+.++++...+.+|.+.|.++...+ .++++|+.|.+|
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tV 313 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTV 313 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceE
Confidence 344455556899999999999998889999999999999999999999999999999999998764 678889999999
Q ss_pred EEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 353 RLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 353 ~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
++|+++ +..+..+.+|.+.|.++.++ +.++++|+.|++|++||+.+++++..+.+|...|+++.+... ..+++|+.
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~ 390 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL 390 (537)
T ss_pred EEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee
Confidence 999976 56777777899999999998 889999999999999999999999999999999999988765 79999999
Q ss_pred CCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-CCCCeEEEEEeeCCCe
Q 008050 432 DALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEGY 509 (579)
Q Consensus 432 dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~~~~V~~v~~sp~~~~ 509 (579)
|+.|++||+++. +++.++.+|..-+.++.+ .+++|++++.|++|++||...++++..+.+ |.+.|+.+++. ..
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~ 465 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KE 465 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cc
Confidence 999999999999 999999999998866665 567999999999999999999999999998 66788888775 35
Q ss_pred EEEEEECCCEEEEEECCCCeEEEEecCCC
Q 008050 510 FLVTGSYDMTVKVWSGRDFKLVKSLSGHE 538 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 538 (579)
.+++++.||.+++||++++++...+-.+.
T Consensus 466 ~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred eEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 68888999999999999999888774443
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=6.4e-28 Score=233.12 Aligned_cols=241 Identities=26% Similarity=0.482 Sum_probs=211.7
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCc
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGK---YLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~---~l~s~s~dg~I~lwd~~~~~ 402 (579)
.|.+.|.++... +.+|++|++||.+++|+..|+....+.+|.+.|.+++|.-.+. .|++++.|.++++|-++.+.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 388899998887 6899999999999999999999999999999999888876554 49999999999999998765
Q ss_pred EE----EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCeEEEEEecCC
Q 008050 403 EL----LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR-------------------------TGRSILALEGHV 453 (579)
Q Consensus 403 ~~----~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~-------------------------~~~~~~~~~~~~ 453 (579)
.. ....||...|-++...++|..+++|+.|..|.||+.. ++.++.++.+|.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 43 2334999999999999999999999999999999931 123567788999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe---E
Q 008050 454 KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK---L 530 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~---~ 530 (579)
.+|.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...++++.+++. ..+|++|+.|..|++||.+++. .
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~-~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPL-SKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccc-cceeeecCCCCceeecCCCCCCCcee
Confidence 9999999998 56899999999999999999999988876 467899999995 8899999999999999988653 5
Q ss_pred EEEecCCCCcEEEEEEcCCCCE-EEEEEcCCeEEEEEcCCCC
Q 008050 531 VKSLSGHEAKVTSLDIHPDEQS-IATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 531 ~~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~I~iW~~~~~~ 571 (579)
..+|.+|.+.|.++.|+|...+ |++|+.|+++++||+++..
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 6788999999999999996655 8999999999999998765
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=225.12 Aligned_cols=268 Identities=20% Similarity=0.293 Sum_probs=223.1
Q ss_pred CCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCC-eeE-EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 008050 285 DDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPRL-QKF-SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL 361 (579)
Q Consensus 285 h~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~-~~~-~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~ 361 (579)
-+..|++++||| ...+++.|++||+|++|+++.. ..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 367899999999 5567779999999999999863 332 3345699999999999999999999999999999998889
Q ss_pred eEEEecccCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 362 LNTFQGHLDRLARMAFHPSGK--YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp~~~--~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
+..+..|.+.|..+.|-+... .|++|+.|++|++||.+....+..+. ....++++..- ..+++++..+..|.+|+
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYN 182 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEE
Confidence 999999999999999988766 89999999999999999888877764 34567777654 34888999999999999
Q ss_pred CCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEeCCCC---------CeEEEEEeeC
Q 008050 440 LRTGRSILAL--EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR--KSLYVIPAHSN---------LISQVKFEPQ 506 (579)
Q Consensus 440 ~~~~~~~~~~--~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~--~~~~~~~~~~~---------~V~~v~~sp~ 506 (579)
++++...... ..-.-.+.||+...+....+.|+-.|.+.|..+..+ +.-.+|+.|.. .|++|+|+|.
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~ 262 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV 262 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence 9876533221 112334889998888888899999999999998876 44456666652 4788999996
Q ss_pred CCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE
Q 008050 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 556 (579)
...|++.+.||++.+||-.....++....|..+|++++|+.+|.+++-+
T Consensus 263 -hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 263 -HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred -cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 5678889999999999988888898999999999999999999987644
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.8e-27 Score=244.46 Aligned_cols=286 Identities=21% Similarity=0.340 Sum_probs=243.3
Q ss_pred CCCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCeeE---------EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 286 DRPLSGCSYSHDGN---LLATSSLSGVVKIWSMPRLQKF---------SALKGHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 286 ~~~I~~~~~spdg~---~latgs~dg~I~iwd~~~~~~~---------~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
...|.+++|-|.++ .|++ -.++.+.+|.++..... ..+.+|...|.+++++.+...+++|+ .+.++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Sik 397 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIK 397 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEE
Confidence 34577777877653 3333 66889999988752222 45678999999999998877777665 47899
Q ss_pred EEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 354 LWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 354 iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
+|+.+ .+++.++... .+.+..|.|.++++++|...|.+.+||+.+...+.....|.+.|++++.+||+..+++|+.|
T Consensus 398 iWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred EEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC
Confidence 99976 5777777654 78899999999999999999999999999998888888999999999999999999999999
Q ss_pred CeEEEEeCCC-----Ce--EEEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEE
Q 008050 433 ALARVWDLRT-----GR--SILALE-----GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 433 g~I~iwd~~~-----~~--~~~~~~-----~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
.+|++||..- |. .+..+. .-...|.|+.+||||++|+++--|++|+||-+.+.+...++.+|.-+|.+
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 9999999742 11 111111 12356999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+.++|+ +.++++||.|.+|+||-+.-|.|.+.+.+|.+.|+++.|-|....++++|.||.|+-||-.+-.....+
T Consensus 556 mDIS~D-SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 556 MDISPD-SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred EeccCC-cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 999997 889999999999999999999999999999999999999999999999999999999998776655544
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=8.7e-28 Score=247.61 Aligned_cols=285 Identities=18% Similarity=0.367 Sum_probs=244.9
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE--EEEeCCCCCeEE-EEEcc-CCCEEEEEeCC
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF--SALKGHTERATD-VTFSP-VSNHVATSSAD 349 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~--~~l~~h~~~V~~-l~~sp-~~~~l~s~s~d 349 (579)
..+.+.+.+.||+.-|..|++... ..+++++.||++++|+-...+.+ ..+.+|.+.|.+ +++.+ ++-.|++|+.|
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred CcceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 346788899999999998887654 48899999999999997655443 346678888877 88886 44569999999
Q ss_pred CcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 350 RTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 350 g~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
++|.+|... ..++..+++|...|+++....++. +++||.|.++++|-+. +......+|...|+.+.+.|++ .+++
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEe
Confidence 999999955 478899999999999999887886 9999999999999764 4444577999999999999988 8999
Q ss_pred EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCC
Q 008050 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEG 508 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~ 508 (579)
|+.|..|++|.- ++.+.+|.+|...|..+++-+++ .|++++.||.|++|++ ++.++..+.+|.+.|+++..... +
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~-~ 231 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALS-D 231 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCC-C
Confidence 999999999975 88999999999999999999875 5788999999999999 89999999999999999996664 7
Q ss_pred eEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
..+++++.|++++||+.. .+.+.+.-....|+++.+-++|. |++|++||.|+||......
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 789999999999999876 77777775566899999888886 7888899999999987543
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.8e-27 Score=223.59 Aligned_cols=267 Identities=19% Similarity=0.265 Sum_probs=227.5
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF 365 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 365 (579)
...|+.+.|++.++.|++++|||.+++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+++.....+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence 4679999999999999999999999999998886555555 899999999986 46789999999999999999999999
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS 445 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~ 445 (579)
..|...|.++.+.+-...+++|+.|++|++||.+.......+. ..+.|+++... |+.|++|+.+..+.+||+++...
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccc
Confidence 9999999999999988999999999999999998755444443 34488888776 56899999999999999998765
Q ss_pred EEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEeCCC---------CCeEEEEEeeCCCeE
Q 008050 446 ILALE--GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR----KSLYVIPAHS---------NLISQVKFEPQEGYF 510 (579)
Q Consensus 446 ~~~~~--~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~----~~~~~~~~~~---------~~V~~v~~sp~~~~~ 510 (579)
..+.. .-.-.+.||++.|++.-+++++-||.|.+=.+... +..+.|+.|. .+|++++|+|- ...
T Consensus 168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~t 246 (323)
T KOG1036|consen 168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGT 246 (323)
T ss_pred hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cce
Confidence 44221 23345899999998888999999999988766654 4456666664 36899999996 678
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999888788999999999999999873
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-28 Score=225.70 Aligned_cols=241 Identities=25% Similarity=0.444 Sum_probs=210.8
Q ss_pred CCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCC-CeeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEe-CCCC
Q 008050 285 DDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPR-LQKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWN-TDGS 360 (579)
Q Consensus 285 h~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd-~~~~ 360 (579)
-...+..++|+++. +.+++++.||.++|||+.. ...+..++.|...|.++.|++. +..+++++.||+|++|+ ...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 35678899999875 6888899999999999643 4577888999999999999985 45688889999999999 4567
Q ss_pred eeEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 008050 361 LLNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVW 438 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iw 438 (579)
.+.++.+|...|....|+| ..+.+++++.|+++++||++.......+..|...+.|+.|+. +.+++++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 8899999999999999999 567999999999999999987655555889999999999998 66799999999999999
Q ss_pred eCCCC-eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC-CceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 439 DLRTG-RSILALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 439 d~~~~-~~~~~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
|+++. .++..+.+|.-.|..+.|||. ...|++++.|-+++|||... ...+.+...|...+..+.|+...+.++++++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99985 467888999999999999994 56899999999999999874 4456677789999999999998889999999
Q ss_pred CCCEEEEEEC
Q 008050 516 YDMTVKVWSG 525 (579)
Q Consensus 516 ~dg~I~iwd~ 525 (579)
.|+.++||+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999983
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-26 Score=219.17 Aligned_cols=253 Identities=20% Similarity=0.287 Sum_probs=218.6
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeC--CCeEEEEE
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF--DKTWRLWD 397 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~--dg~I~lwd 397 (579)
.+.+....+.|.++.|+.+|.+|++++.|.+++||| .+++.+.++..++..+..++|......++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 344555678999999999999999999999999999 788899999999999999999888888888777 89999999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008050 398 VDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I 477 (579)
+.+.+.++.+.||...|++++.+|-+..+++++.|++|++||+|..++...+.....+ .++|+|.|-++|++...+.|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeE
Confidence 9999999999999999999999999899999999999999999988877666544443 57899999999999988899
Q ss_pred EEEECCCC--ceeEEEeCC---CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcE---EEEEEcCC
Q 008050 478 RIWDLRKR--KSLYVIPAH---SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKV---TSLDIHPD 549 (579)
Q Consensus 478 ~iwDl~~~--~~~~~~~~~---~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V---~~l~~s~d 549 (579)
++||+|.. .+..++... ....+.+.|+++ |.+|+.+...+.+++.|.-+|..+.++.++...- .+.+|+||
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 99999974 344444433 567899999997 6777777889999999999999999987765433 67789999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 550 EQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+++|++|+.||+|.+|+++++.....+
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 999999999999999999988766543
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.8e-27 Score=222.23 Aligned_cols=264 Identities=23% Similarity=0.360 Sum_probs=222.9
Q ss_pred EEEEecCCeEEEEeCCC------------CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEec
Q 008050 301 LATSSLSGVVKIWSMPR------------LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQG 367 (579)
Q Consensus 301 latgs~dg~I~iwd~~~------------~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~ 367 (579)
|++|++...|.=+++.- ...+..+..|.+.|++++.+ +.++++|+.|-+|+|||+. ...+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 56677766666665531 22355677899999999986 7999999999999999954 466778889
Q ss_pred ccCCeEEEEEecCCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE
Q 008050 368 HLDRLARMAFHPSGK--YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS 445 (579)
Q Consensus 368 h~~~I~~l~~sp~~~--~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~ 445 (579)
|.+.|+++.|.+.-. .|++|+.||.|.+|+......+..+.+|.+.|+.+++||.|++.++.+.|+.++.||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 446 ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 446 ~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
-..+.-... -+.+.|+|.|.+++.++.+ .|-||.+.+......+... ..+.++.|. ++..|++|+.|+.|.+||.
T Consensus 162 a~v~~L~~~-at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 162 AFVLNLKNK-ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNEWISLKDT 236 (362)
T ss_pred ceeeccCCc-ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCceEEEecc
Confidence 766653333 3459999999999988876 5999999877766655443 446666666 4778999999999999999
Q ss_pred CCCeEEEEecCCCCcEEEEEE--cCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 526 RDFKLVKSLSGHEAKVTSLDI--HPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 526 ~~~~~~~~l~~h~~~V~~l~~--s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.+..+...+.+|...|-++.+ .+++.+|+|+|.||.|+|||+....
T Consensus 237 ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 237 DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 999999999999999999984 4578899999999999999998763
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=243.84 Aligned_cols=280 Identities=21% Similarity=0.327 Sum_probs=233.5
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE---EEEeCCCCCeEEEEEccC-----------CCEEEEEeCCCcEEE
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF---SALKGHTERATDVTFSPV-----------SNHVATSSADRTARL 354 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~---~~l~~h~~~V~~l~~sp~-----------~~~l~s~s~dg~I~i 354 (579)
..+|.|++....|.+.-.|..++|||+.+...+ ..+-.|...|+.+.--|. ...|++|+.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 346889999999999999999999999765443 445569999998877662 246899999999999
Q ss_pred EeCCC----CeeEE----------------------------------EecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 355 WNTDG----SLLNT----------------------------------FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 355 wd~~~----~~~~~----------------------------------~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
|++.+ ..... .-.....+.+++++|+|++|++|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99654 11100 00122368999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCC-----------------
Q 008050 397 DVDTGVELLLQEGHSRSVYGIAFHP---DGSLAASCGLDALARVWDLRTG-RSILALEGHVKP----------------- 455 (579)
Q Consensus 397 d~~~~~~~~~~~~~~~~V~~l~~sp---dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~----------------- 455 (579)
++..-......+.|...|.|+.|+. ..++|++++.|..|+|||+... ..+.++.+|...
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 9999999999999999999999986 3468999999999999998532 333444444444
Q ss_pred --------------------------------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC---CCCCeEE
Q 008050 456 --------------------------------VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA---HSNLISQ 500 (579)
Q Consensus 456 --------------------------------I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~---~~~~V~~ 500 (579)
++.+++.|+.+++++++.|..|+|||+.+++..+.|++ |.+....
T Consensus 567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 44555566677899999999999999999999999986 5567778
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
+..+|. +.|+++.+.|.++.+||+.+++++..+.||...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 647 v~lDPS-giY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPS-GIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCC-ccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999995 89999999999999999999999999999999999999999999999999999999999865
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=218.48 Aligned_cols=254 Identities=23% Similarity=0.357 Sum_probs=225.0
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEE
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd 397 (579)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++.. .-....+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 445789999999999999999999999999999997653 22345789999999999885 45899999999999999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008050 398 VDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I 477 (579)
++.+++..........+ .+.|+|+|.+++.++.|..|.+.|.++.+.+...+ ....+.-++|+.++.+++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999998876655554 57899999999999999999999999988776655 33457889999878888777778999
Q ss_pred EEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 478 ~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
.|......+++..+++|.....++.|+|+ |++|++|+.|-.+.+||+...-++..+..+.-+|..+.||.||++|+++|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCC-CceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 99999999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEcCCCCccccccC
Q 008050 558 HDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 558 ~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
.|..|-|=++.+|...+.+.+
T Consensus 251 EDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred ccceEEeEecccCCeEEEeec
Confidence 999999999999888777654
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.6e-27 Score=233.27 Aligned_cols=244 Identities=27% Similarity=0.459 Sum_probs=210.0
Q ss_pred eCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCC-----------CeeEEEecccCCeEEEEEecCCC-EEEEEeCCC
Q 008050 325 KGHTERATDVTFSPVSN-HVATSSADRTARLWNTDG-----------SLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDK 391 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~-----------~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg 391 (579)
-.|.+.|+.+.+-|+.. ++++.+..+.|.|||... ..-..+.+|...-.+++|++... +|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35899999999999765 566778889999999432 12237889998888899998655 899999999
Q ss_pred eEEEEECCCCc-------EEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC--CCeEEEEEecCCCCeEEEEE
Q 008050 392 TWRLWDVDTGV-------ELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLR--TGRSILALEGHVKPVLGISF 461 (579)
Q Consensus 392 ~I~lwd~~~~~-------~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~--~~~~~~~~~~~~~~I~si~~ 461 (579)
+|++||+.... ....+.+|...|..++|++ +..+|++++.|+.+.|||+| +.+......+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999997643 2456789999999999999 55689999999999999999 55666778899999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-----------
Q 008050 462 SP-NGYHLATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----------- 528 (579)
Q Consensus 462 sp-~g~~l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----------- 528 (579)
+| ++..||+|+.|++|++||+|+. ++++++.+|...|.+|.|+|....+|++++.|+.+.|||+...
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 7788999999999999999984 5789999999999999999999999999999999999998642
Q ss_pred ---eEEEEecCCCCcEEEEEEcCCCCE-EEEEEcCCeEEEEEcC
Q 008050 529 ---KLVKSLSGHEAKVTSLDIHPDEQS-IATVSHDRWIKLWSTR 568 (579)
Q Consensus 529 ---~~~~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~I~iW~~~ 568 (579)
+++..-.||.+.|..+.|+|+..+ |++.+.|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 345677899999999999998877 6788999999999987
No 89
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-27 Score=242.12 Aligned_cols=239 Identities=23% Similarity=0.404 Sum_probs=216.6
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--Cee
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-HTERATDVTFSPVSNHVATSSADRTARLWNTDG--SLL 362 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~~ 362 (579)
...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|+ +..+.+|+.||.|..+|+.. ...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78999999999999999999999999999999999999998 99999999998 68899999999999999543 233
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEe--CCCeEEEEe
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCG--LDALARVWD 439 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~--~dg~I~iwd 439 (579)
..+.+|...|+.+.|++++.+|++|+.|+.+.|||......+..+..|...|..++|+| ...+||+|+ .|++|++||
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 35889999999999999999999999999999999988888889999999999999999 456888875 699999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
..++..+..... ...|.+|.|++..+-|+++. .++.|.||+..+.+.+..+.+|...|..++++|+ +..+++|+.|
T Consensus 375 ~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd-g~~i~t~a~D 452 (484)
T KOG0305|consen 375 TNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD-GETIVTGAAD 452 (484)
T ss_pred cCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC-CCEEEEeccc
Confidence 999999888774 45599999999887777654 5678999999999999999999999999999997 8899999999
Q ss_pred CEEEEEECCCC
Q 008050 518 MTVKVWSGRDF 528 (579)
Q Consensus 518 g~I~iwd~~~~ 528 (579)
.++++|++-+.
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998764
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=216.80 Aligned_cols=259 Identities=22% Similarity=0.370 Sum_probs=215.1
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN--HVATSSADRTARLWNTD 358 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~s~s~dg~I~iwd~~ 358 (579)
....|.++|++++.+ +.|+|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.+... .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 445799999999986 89999999999999999999999999999999999999998764 89999999999999965
Q ss_pred C-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 359 G-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 359 ~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
. ..+.+++.|.+.|+.+++||.|++-++.+.|+.+++||+-+|+.-....- ...-+.+.|+|.|.+++.++. ..|-+
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~-~~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGR-NKIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEec-cEEEE
Confidence 4 77889999999999999999999999999999999999998876655432 223345999999998888775 46789
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEE-eeCCCeEEEEEEC
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKF-EPQEGYFLVTGSY 516 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~-sp~~~~~l~sgs~ 516 (579)
|.+.+......+... ..+.++.|. ++.+|++|+.|+.|.+||..+..+...+.+|...|.++.+ ....+.||+++|.
T Consensus 194 ~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 194 YQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 988776655444432 457777776 5568999999999999999999999999999999999984 3334789999999
Q ss_pred CCEEEEEECCCC-----eEEEEecCCCCcEEEEEE
Q 008050 517 DMTVKVWSGRDF-----KLVKSLSGHEAKVTSLDI 546 (579)
Q Consensus 517 dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~ 546 (579)
||.|+|||++.. +++..+.. ...++|+..
T Consensus 272 DG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 272 DGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 999999998765 45555543 445666654
No 91
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=240.88 Aligned_cols=223 Identities=16% Similarity=0.269 Sum_probs=181.4
Q ss_pred EeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCc--------EEEEEecCCCCeE
Q 008050 346 SSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGV--------ELLLQEGHSRSVY 415 (579)
Q Consensus 346 ~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~--------~~~~~~~~~~~V~ 415 (579)
|+.++.|++|+. ....+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999994 34567788999999999999997 7899999999999999997642 2345678999999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 416 GIAFHPDGSL-AASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 416 ~l~~spdg~~-l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
+++|+|++.. |++++.||.|+|||+++++.+..+. |...|.+++|+++|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5789999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEEE-----EeeCCCeEEEEEECCC----EEEEEECCC-CeEEEEec--CCCCcEEEEEEcCCCCEEEEEEcCCeE
Q 008050 495 SNLISQVK-----FEPQEGYFLVTGSYDM----TVKVWSGRD-FKLVKSLS--GHEAKVTSLDIHPDEQSIATVSHDRWI 562 (579)
Q Consensus 495 ~~~V~~v~-----~sp~~~~~l~sgs~dg----~I~iwd~~~-~~~~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~I 562 (579)
.+.+.... |+++ +.+|++++.|+ .|+|||+++ .+++..+. .+.+.+......++|.++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 87654433 3355 56777766663 799999985 55555543 333444444445568889999999999
Q ss_pred EEEEcCCC
Q 008050 563 KLWSTRNK 570 (579)
Q Consensus 563 ~iW~~~~~ 570 (579)
++|++..+
T Consensus 288 r~~e~~~~ 295 (568)
T PTZ00420 288 RYYQHSLG 295 (568)
T ss_pred EEEEccCC
Confidence 99999765
No 92
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.3e-27 Score=235.77 Aligned_cols=281 Identities=20% Similarity=0.323 Sum_probs=241.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC---eeEEEEeC--CCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL---QKFSALKG--HTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~---~~~~~l~~--h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
...|..-|.++.+|...++++||+ .|.|+|||+... ..+..+.. ....|.++.+++||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 346888899999999999999998 688999998642 23333432 456799999999999999999999999999
Q ss_pred CCCCee---EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 357 TDGSLL---NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 357 ~~~~~~---~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
+..... ..+....-....++.+||.+..++++.||.|.|||+.+...+..+.+|...+.||.+++||..|.+|+.|+
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 654322 22333334567789999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
+|+.||+++++.+.... ....|.++.++|++.+|++|-.++.+.|... ++...+.+..|.+.|.++.|.+. |.++++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~c-GkwfvS 650 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYC-GKWFVS 650 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEeccc-Cceeee
Confidence 99999999998877665 3456999999999999999999999999886 45566778889999999999995 899999
Q ss_pred EECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.+.|+.+..|...-|..+...+ ..+.|.++++|.|.++|+||+.|..-.+|.+
T Consensus 651 tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999898887776 4567999999999999999999988888875
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.4e-25 Score=222.36 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=213.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCC-CeeEEEecccCCeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV-ATSSADRTARLWNTDG-SLLNTFQGHLDRLARM 375 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l 375 (579)
++++++++.||.|++||+.+++.+..+..+. .+.+++|++++..+ ++++.++.|++||..+ +....+..+. .+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 3578899999999999999999888887654 46789999999876 5667889999999664 4444454443 35678
Q ss_pred EEecCCCEEEEE-eCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEecCC
Q 008050 376 AFHPSGKYLGTT-SFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA-LARVWDLRTGRSILALEGHV 453 (579)
Q Consensus 376 ~~sp~~~~l~s~-s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~ 453 (579)
.|+++++.++++ +.++.|++||+.++..+..+.. ...+.+++|+|+|.++++++.++ .+.+||..+++........
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~- 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD- 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-
Confidence 999999977665 4689999999998877665542 33568899999999999888765 5678899888776655433
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeCCCC-------CeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 454 KPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPAHSN-------LISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~~~~-------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
..+.+++|+++|.+|++++ .++.|++||+.+++.+..+..+.. ....+.|++++..++++.+.++.|.+||.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 3467899999999886554 689999999999887776653211 23468899975554555566778999999
Q ss_pred CCCeEEEEecCCCCcEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCCccccccC
Q 008050 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATV-SHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 526 ~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++....+.+
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 9988876653 34578999999999999886 4689999999999887666544
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=4.3e-26 Score=211.25 Aligned_cols=233 Identities=25% Similarity=0.377 Sum_probs=210.8
Q ss_pred EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 008050 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG 401 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~ 401 (579)
.+++|..+++.|.++.+|++|++|+.|.+..+|- .+|+.+.++.+|.+.|+++...-+.+++++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 3578999999999999999999999999999998 699999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCC-------CCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 008050 402 VELLLQEGHSRSVYGIAFHPDGSLAASCGL-----DALARVWDLR-------TGRSILALEGHVKPVLGISFSPNGYHLA 469 (579)
Q Consensus 402 ~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-----dg~I~iwd~~-------~~~~~~~~~~~~~~I~si~~sp~g~~l~ 469 (579)
+.+.... ....|..+.|+.+|++++.+.. .+.|.++|++ +.+++..+..+...++.+-|.|-+.+|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998884 4678999999999998887653 4689999998 4556788888889999999999999999
Q ss_pred EEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC
Q 008050 470 TGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 470 tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 548 (579)
+|..||.|.+||+++++ .+.....|...|+.++++++ ..++++++.|.+-++||..+.++++++.. ..+|++.+++|
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP 241 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISP 241 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeee-cccccceeccc
Confidence 99999999999999975 45566789999999999997 88999999999999999999999999974 56899999999
Q ss_pred CCCEEEEEEc
Q 008050 549 DEQSIATVSH 558 (579)
Q Consensus 549 dg~~L~s~s~ 558 (579)
....++.||.
T Consensus 242 ~~d~VilgGG 251 (327)
T KOG0643|consen 242 LLDHVILGGG 251 (327)
T ss_pred ccceEEecCC
Confidence 8877777663
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=230.92 Aligned_cols=236 Identities=24% Similarity=0.399 Sum_probs=205.8
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeE-
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLLN- 363 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~- 363 (579)
.+.+.+++|-.||++|++|...|.|+|||+.+...+..+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+++..+.
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA 147 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE
Confidence 56789999999999999999999999999888777888899999999999999654 5778888899999998776554
Q ss_pred EEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 364 TFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
.+.+|++.|.|.+|+|.. ..+++|+.||+|++||++.......-..|..+|-.+.+-|.|.++++++ ...|++||+-+
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTT 226 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecC
Confidence 789999999999999954 5899999999999999998744444448999999999999999999887 56899999996
Q ss_pred CeE-EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEE
Q 008050 443 GRS-ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVK 521 (579)
Q Consensus 443 ~~~-~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~ 521 (579)
|.. +..+..|.+.|+|+++..++..|++|+-|+.+++||+.+.+.++.+.. .++|.+++.+|+ +..++.|..||.+.
T Consensus 227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~d-d~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPD-DQTVVIGMSNGLVS 304 (487)
T ss_pred CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCC-CceEEEecccceee
Confidence 654 444555999999999999999999999999999999988999988876 578999999996 77888999999887
Q ss_pred EEE
Q 008050 522 VWS 524 (579)
Q Consensus 522 iwd 524 (579)
+-+
T Consensus 305 ~rr 307 (487)
T KOG0310|consen 305 IRR 307 (487)
T ss_pred eeh
Confidence 764
No 96
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6e-27 Score=228.53 Aligned_cols=245 Identities=22% Similarity=0.331 Sum_probs=213.5
Q ss_pred eEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
...+..++.|..++|+.+.|.+++.+++..+.|+.+++|++.......++.+|.+.|+++.|......+++|+.|.+|++
T Consensus 208 k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 208 KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL 287 (459)
T ss_pred hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhh
Confidence 35577888999999999999999999999999999999999999999999999999999999987777999999999999
Q ss_pred EeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 355 WNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 355 wd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
||+.......-......+..++.+ ...+++|-+|++|++||+++.........+. .|+++..+.+|..+.+++.|..
T Consensus 288 WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred hhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence 997654333322334445566655 6678999999999999999999988887665 8999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCC--CeEEEEEeeCCC
Q 008050 435 ARVWDLRTGRSILALEGH----VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEG 508 (579)
Q Consensus 435 I~iwd~~~~~~~~~~~~~----~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~--~V~~v~~sp~~~ 508 (579)
+.+.|+++......+... ....+.+.|||++.|+++|+.||.|+||++.++++...+..... .|+++.|++. |
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s-G 443 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS-G 443 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC-C
Confidence 999999999888777532 23488899999999999999999999999999999988876444 5999999995 8
Q ss_pred eEEEEEECCCEEEEE
Q 008050 509 YFLVTGSYDMTVKVW 523 (579)
Q Consensus 509 ~~l~sgs~dg~I~iw 523 (579)
..|++++.++.+.+|
T Consensus 444 ~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 444 SGLLSADKQKAVTLW 458 (459)
T ss_pred chhhcccCCcceEec
Confidence 889999999999999
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-27 Score=218.61 Aligned_cols=248 Identities=21% Similarity=0.318 Sum_probs=223.3
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
....+..||.+.|.+++++.+-...++++.|-+-+|||.-++..+..+. |..-|.+++|+.|.++|++|+.+..++|||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3556778999999999999999999999999999999999999998876 888999999999999999999999999999
Q ss_pred CCC--CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 357 TDG--SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 357 ~~~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
++. -....+.+|.+.|..+.|....+.+++++.|++|++||.+++..+..+. .+..|+++.++++|.+|.++ ..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCce
Confidence 654 4667889999999999999999999999999999999999999988874 46689999999999776655 5778
Q ss_pred EEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-eCCCCCeEEEEEeeCCCeEEEE
Q 008050 435 ARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI-PAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 435 I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~-~~~~~~V~~v~~sp~~~~~l~s 513 (579)
|.+||..+...+..++-. ..|.+...+|+...+++|+.|..++.||..++..+..+ ++|-++|.++.|+|+ |...++
T Consensus 207 V~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd-GE~yAs 284 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD-GELYAS 284 (334)
T ss_pred eEEeccccccceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-Cceeec
Confidence 999999999888888744 44999999999999999999999999999999999886 889999999999997 888999
Q ss_pred EECCCEEEEEECCCCe
Q 008050 514 GSYDMTVKVWSGRDFK 529 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~ 529 (579)
||.||+|++|....++
T Consensus 285 GSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCCceEEEEEecCCC
Confidence 9999999999876554
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.1e-26 Score=213.90 Aligned_cols=286 Identities=24% Similarity=0.389 Sum_probs=220.5
Q ss_pred eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE--EE--eCCCCCeEEEEEccCCCEEEEEe-CCCcE
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS--AL--KGHTERATDVTFSPVSNHVATSS-ADRTA 352 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~--~l--~~h~~~V~~l~~sp~~~~l~s~s-~dg~I 352 (579)
....+.||.+.|++++|+.||++|++++.|+.|+||++....... .+ .-..+.-+.+.|.||..-+++.. ...++
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 456788999999999999999999999999999999998643211 11 11233568899999987665544 45689
Q ss_pred EEEeCC----CCeeE---------EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEE
Q 008050 353 RLWNTD----GSLLN---------TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF 419 (579)
Q Consensus 353 ~iwd~~----~~~~~---------~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~ 419 (579)
++|... |.... .-..|.-.+-.+-...++.+|++++.|..|.+|++. |+.+.........-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 999732 22111 112355566667777788899999999999999998 8888877766677788899
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC---C-----eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----C--
Q 008050 420 HPDGSLAASCGLDALARVWDLRT---G-----RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK----R-- 485 (579)
Q Consensus 420 spdg~~l~sg~~dg~I~iwd~~~---~-----~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~----~-- 485 (579)
+|+|+++++++..--|++|.+-- | ..++.+++|...|..++|+++...+++.+.||+++|||+.- +
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 99999999999999999998632 2 35678899999999999999999999999999999999752 1
Q ss_pred -ceeEEEe----CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcC
Q 008050 486 -KSLYVIP----AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 486 -~~~~~~~----~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
+.+.... ...+.-..+.++|. +..|+.+ ....+++|..++++....+ ..|...|++++|+++|++++|+| |
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~-g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPS-GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCC-CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 1222221 11223347999996 6666553 4556999999998877776 46899999999999999999997 7
Q ss_pred CeEEEEEc
Q 008050 560 RWIKLWST 567 (579)
Q Consensus 560 g~I~iW~~ 567 (579)
+.++++.-
T Consensus 394 r~vrv~~n 401 (420)
T KOG2096|consen 394 RYVRVIRN 401 (420)
T ss_pred eeeeeecC
Confidence 88888863
No 99
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-25 Score=233.74 Aligned_cols=292 Identities=20% Similarity=0.312 Sum_probs=248.4
Q ss_pred CCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC---C-
Q 008050 286 DRPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALK-GHTERATDVTFSPVSNHVATSSADRTARLWNTD---G- 359 (579)
Q Consensus 286 ~~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~---~- 359 (579)
.+.|++++|..||+ ++++|+..|.+.+||++..+.+..+. .|.+.|....|.+....+++++.|+.+++|-.+ |
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 58999999999997 55677778999999999998888776 799999999999999999999999999999644 2
Q ss_pred -CeeEEEecccCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCC-------------------------------------
Q 008050 360 -SLLNTFQGHLDRLARMAFH-PSGKYLGTTSFDKTWRLWDVDT------------------------------------- 400 (579)
Q Consensus 360 -~~~~~~~~h~~~I~~l~~s-p~~~~l~s~s~dg~I~lwd~~~------------------------------------- 400 (579)
+.+..-.||..+..++.|. .+|.++.+++.|++++.+++..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 5667778899999999998 6788888988888777765511
Q ss_pred ----------------------------CcEEEEEecC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 008050 401 ----------------------------GVELLLQEGH------SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI 446 (579)
Q Consensus 401 ----------------------------~~~~~~~~~~------~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~ 446 (579)
...-.....+ ...+++++.++.|++.+.|+..|.|-+|++.+|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 0000000012 256888999999999999999999999999999988
Q ss_pred EEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 447 LAL---EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 447 ~~~---~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
..| ..|.++|++++...-++.+++++.+|.+++||+.+...+..+... ..+.++.++.. ..+++.+..|-.|.++
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~-s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRV-SDLLAIALDDFSIRVV 561 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeeh-hhhhhhhcCceeEEEE
Confidence 888 589999999999998899999999999999999988877777653 55777888875 5678888899999999
Q ss_pred ECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccCC
Q 008050 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDVD 579 (579)
Q Consensus 524 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~D 579 (579)
|..+.+.++.|.+|.+.|++++|||||++|++++.|++|++||+.++.+...+-+|
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 99999999999999999999999999999999999999999999999887765543
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.6e-26 Score=224.37 Aligned_cols=245 Identities=25% Similarity=0.469 Sum_probs=207.7
Q ss_pred ccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCe----------eEEEEeCCCCCeEEEEEccCC-CEEEEEeCC
Q 008050 282 ESGDDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPRLQ----------KFSALKGHTERATDVTFSPVS-NHVATSSAD 349 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~~~----------~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~d 349 (579)
..-|.+.|+.+.+-|.. .++++++..|.|+|||..+.. ....+.+|.+.-++++|++.. -.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34689999999998875 577788899999999986422 223778999988899999865 468999999
Q ss_pred CcEEEEeCCC--------CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECC--CCcEEEEEecCCCCeEEEE
Q 008050 350 RTARLWNTDG--------SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVD--TGVELLLQEGHSRSVYGIA 418 (579)
Q Consensus 350 g~I~iwd~~~--------~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~--~~~~~~~~~~~~~~V~~l~ 418 (579)
+.|++||++. .....+.+|...|..++|++.. ..|++++.|+.+.|||++ +.+.......|.+.|+|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999654 2456788999999999999955 578889999999999999 4556667779999999999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC----------
Q 008050 419 FHP-DGSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKR---------- 485 (579)
Q Consensus 419 ~sp-dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~---------- 485 (579)
|+| ++.+|++|+.|++|.+||+|+. +++.++.+|...|.+|.|+|+ ...|++++.|+.+.|||+..-
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 999 5668899999999999999985 577889999999999999994 578899999999999999752
Q ss_pred ----ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 486 ----KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 486 ----~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
..++.-.+|...|..+.|+|.....|++.+.|+.+.||...
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466678999999999999988899999999999999864
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=219.93 Aligned_cols=239 Identities=26% Similarity=0.451 Sum_probs=214.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~ 406 (579)
...+.++...+..+.+++|+.|..+.++|. .++.+..+.||...|+.+.|+++...+++++.|..|++|..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 346788888887788999999999999994 5677889999999999999999999999999999999999988888888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG--HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
...|..+|+.+..+|.|.||++++.||+..+.|++++..+..... ..-.+++..|+|||.+|.+|..||.|+|||+.+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 889999999999999999999999999999999999998877654 234589999999999999999999999999999
Q ss_pred CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC-CcEEEEEEcCCCCEEEEEEcCCeEE
Q 008050 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE-AKVTSLDIHPDEQSIATVSHDRWIK 563 (579)
Q Consensus 485 ~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~ 563 (579)
+..+..|.+|.++|..+.|+. +|+||++++.|+.|++||++..+.+.++...+ ..|.+++|...|.+|+.+|.|=.|+
T Consensus 379 ~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 999999999999999999998 59999999999999999999888777775332 3699999999999999998776666
Q ss_pred EEEc
Q 008050 564 LWST 567 (579)
Q Consensus 564 iW~~ 567 (579)
+++-
T Consensus 458 ~~~k 461 (506)
T KOG0289|consen 458 ICKK 461 (506)
T ss_pred EEec
Confidence 6663
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=220.21 Aligned_cols=281 Identities=15% Similarity=0.234 Sum_probs=236.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--CeeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCee
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR--LQKFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~ 362 (579)
.++|+++.|+|...+|++++.||.++||.++. ...+..+.-...+|.+.+|.|+|. .+++++....++.||+....+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 57999999999999999999999999998864 445666666778999999999998 899999999999999766544
Q ss_pred EEEe---ccc-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 363 NTFQ---GHL-DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 363 ~~~~---~h~-~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
..+. ++. ..+..+.+++++++|+..+..|.|.+....+++.+..+. ..+.|..++|+.|++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 4433 333 356788899999999999999999999999998887774 45679999999999999999999999999
Q ss_pred eCCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeEEEeCCCCCeEEEEEeeCCCeEE
Q 008050 439 DLRTGRSILALEGHVK-PVLGISFSPNGYHLATGGEDNTCRIWDLRK------RKSLYVIPAHSNLISQVKFEPQEGYFL 511 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~-~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~------~~~~~~~~~~~~~V~~v~~sp~~~~~l 511 (579)
|+++..++..+....+ .-+++|.+.+|.||++|+..|.|.|||..+ .+++..+..-...|+++.|+++ ..+|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d-~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD-AQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc-hhhh
Confidence 9999999888864332 246788889999999999999999999654 3566666666678999999997 7787
Q ss_pred EEEEC--CCEEEEEECCCCeEEEEecCC---CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 512 VTGSY--DMTVKVWSGRDFKLVKSLSGH---EAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 512 ~sgs~--dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+.+|. ...+++-.+.+......+... -+.|+|++|||.|.+|+.|..+|.+.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 77764 678999999888877777543 3468999999999999999999999999975
No 103
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-25 Score=211.05 Aligned_cols=287 Identities=19% Similarity=0.268 Sum_probs=224.1
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEec
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQG 367 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~ 367 (579)
-.||.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|++++.|..|++|| ..|..++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 78999999999999999999999999999998888999999999999999999999999999999999 5566555544
Q ss_pred ccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCC----CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 368 HLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHS----RSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 368 h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~----~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
..++|+.+.|||... .+++.-.+..-.+.++........-.... ..-.+..|++.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678899999999554 34444445445555554433222211111 1122346889999999999999999999999
Q ss_pred CeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eeEEEe--CCCCCeEEEEEeeCCCeE
Q 008050 443 GRSILALEGHV-KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK---------SLYVIP--AHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 443 ~~~~~~~~~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~---------~~~~~~--~~~~~V~~v~~sp~~~~~ 510 (579)
.+++..++... ..|..|.|+.+|+.|+..+.|..|+.|+++.-- +.+.+. ...-.-.+++|+.+ |.|
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d-geY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD-GEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC-ccE
Confidence 99999888766 789999999999999999999999999986311 111111 01223457889987 555
Q ss_pred EEEEE-CCCEEEEEECCCCeEEEEecCCC-CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 511 LVTGS-YDMTVKVWSGRDFKLVKSLSGHE-AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 511 l~sgs-~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+++|+ .-..++||....|.+++.+.|.. .....+.|+|-...|++. ..|.++||.......+..|..
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsafAP 332 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAFAP 332 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccchhhcCc
Confidence 55554 46789999999999999998877 457889999988777777 678999999988777766543
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.8e-25 Score=241.89 Aligned_cols=249 Identities=26% Similarity=0.415 Sum_probs=212.6
Q ss_pred eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC------------------CeeEEEEeCCCCCeEEEEEccC
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR------------------LQKFSALKGHTERATDVTFSPV 339 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~------------------~~~~~~l~~h~~~V~~l~~sp~ 339 (579)
..+....|.+.|+|+.|++||++||+|+.|+.|.||.... .+.+..+.+|...|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3456677999999999999999999999999999998762 2356778899999999999999
Q ss_pred CCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC------CC
Q 008050 340 SNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH------SR 412 (579)
Q Consensus 340 ~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~------~~ 412 (579)
+.+|++++.|++|.||| ...+.+..+.+|.+.|..+.|.|-|+||++-+.|++|++|++...........+ ..
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 99999999999999999 445788999999999999999999999999999999999997775555544332 23
Q ss_pred CeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCC-----CC------------EEEEE
Q 008050 413 SVYGIAFHPDGSLAASCGL----DALARVWDLRTGRSILALEGHVKPVLGISFSPN-----GY------------HLATG 471 (579)
Q Consensus 413 ~V~~l~~spdg~~l~sg~~----dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~-----g~------------~l~tg 471 (579)
.+..+.|+|||.+|++... -.++.|.+-.+.+.-..|-+|.+++.++.|+|. .. .+++|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 4778999999999998642 346888888788888899999999999999981 11 67899
Q ss_pred eCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 472 GEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 472 s~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
+.|++|.||.....+++..+. ..+..|.+++|+|+ |..|+++|.||+|.++.+..
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd-G~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD-GFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCC-CCeEEEEecCCeEEEEEcch
Confidence 999999999988777776554 34677999999997 78888899999999998765
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=220.98 Aligned_cols=247 Identities=27% Similarity=0.418 Sum_probs=217.2
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCee-----------------EEE-ecccCCeEEEEEecCC
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLL-----------------NTF-QGHLDRLARMAFHPSG 381 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~-----------------~~~-~~h~~~I~~l~~sp~~ 381 (579)
+..+..|.-+|.++++++++.+.++++.+|+|.-|++. ++.. ..- ..|...+.+++.+++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 33456799999999999999999999999999999943 2211 011 3788899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEE
Q 008050 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISF 461 (579)
Q Consensus 382 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~ 461 (579)
+||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-...+.+++++.|..|++|++.....+.++.+|...|.+|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-C---
Q 008050 462 SPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG-H--- 537 (579)
Q Consensus 462 sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h--- 537 (579)
..-++.+-+|+.|+++++|++. ......+.+|.+.+.|++|-. ...|++|+.+|.|.+|++...+++.+... |
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 9999989899999999999994 444456678888999999985 56799999999999999998888776531 2
Q ss_pred --------CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 538 --------EAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 538 --------~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
...|++++..+...++++|+.+|.|++|.+..+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 237999999999999999999999999999876
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=224.59 Aligned_cols=256 Identities=23% Similarity=0.377 Sum_probs=204.5
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----eeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEE
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS-----LLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRL 395 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-----~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~l 395 (579)
..+++|+..|.++++.|.|..|++|+.|..|++||+.+- ....+. .....|.++.|++.|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 356789999999999999999999999999999997662 122222 23457899999999999999999999999
Q ss_pred EECCCCcEEE------------EEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeE-EEEEe-----cCCCCe
Q 008050 396 WDVDTGVELL------------LQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRS-ILALE-----GHVKPV 456 (579)
Q Consensus 396 wd~~~~~~~~------------~~~~~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~-~~~~~-----~~~~~I 456 (579)
+|-....... ..++|...++|.+|+|+.+ .|++++.||+++|||+.+.+. ...++ +..-++
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9976544332 2357888999999999654 899999999999999986542 33332 234468
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEeCCCC--CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-E
Q 008050 457 LGISFSPNGYHLATGGEDNTCRIWDLRKRK---SLYVIPAHSN--LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-L 530 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~---~~~~~~~~~~--~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~ 530 (579)
++++|+++|++|++|+.||.|.+||.++.. ..+.-.+|.. .|++|.|+++ |++|++-+.|+++++||++..+ +
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccccc
Confidence 999999999999999999999999986532 2334456766 8999999997 8899999999999999998764 5
Q ss_pred EEEecCCC--CcEEEEEEcCCCCEEEEEEc------CCeEEEEEcCCCCccccccC
Q 008050 531 VKSLSGHE--AKVTSLDIHPDEQSIATVSH------DRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 531 ~~~l~~h~--~~V~~l~~s~dg~~L~s~s~------Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+....+.. -+-+.++|||+.++|++|+. -|++.+|+..+-..+..+++
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 55554432 34578999999999999874 47899999988887777765
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3e-25 Score=220.01 Aligned_cols=265 Identities=18% Similarity=0.267 Sum_probs=219.2
Q ss_pred CeEEEEeCCCCeeEEEEeCCC-CCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCee-EEEecccCCeEEEEEecCCCEE
Q 008050 308 GVVKIWSMPRLQKFSALKGHT-ERATDVTFSPVSNHVATSSA-DRTARLWNTDGSLL-NTFQGHLDRLARMAFHPSGKYL 384 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~~~~~~-~~~~~h~~~I~~l~~sp~~~~l 384 (579)
.++.+||+.+|....++++.. ..-.++..- .+.+++++.. ...|.+|.+..+.. ....-..+.|.++.-+|+|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 459999999999999888652 222222211 2356666654 45899999654322 2233456789999999999999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---------CCeEEEEEecCCCC
Q 008050 385 GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR---------TGRSILALEGHVKP 455 (579)
Q Consensus 385 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~---------~~~~~~~~~~~~~~ 455 (579)
+.|+..|.|++|.+.+|..+..+..|...|+|+.|+.||.+|++|+.||.|.+|++- +-+....|..|.-+
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999863 34577889999999
Q ss_pred eEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-----
Q 008050 456 VLGISFSPN--GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----- 528 (579)
Q Consensus 456 I~si~~sp~--g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----- 528 (579)
|+.+...+. ..+|+++|.|.++++||+..+..+.++.. ...+.++..+|. +..+++|+.+|.|.+.++...
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccc
Confidence 999998774 36899999999999999999998888865 467899999995 888999999999999886543
Q ss_pred -----------eEEEEecCCCC--cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 529 -----------KLVKSLSGHEA--KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 529 -----------~~~~~l~~h~~--~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
..+..+.+|.+ .|+|++++-||..|++|+.||.++|||+.+..+..+
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 24566778988 999999999999999999999999999988776654
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.6e-24 Score=191.68 Aligned_cols=249 Identities=23% Similarity=0.329 Sum_probs=208.5
Q ss_pred EEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee-----EEEEeCCCCCeEEEEEccC----CCEEEEE
Q 008050 276 LYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK-----FSALKGHTERATDVTFSPV----SNHVATS 346 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~-----~~~l~~h~~~V~~l~~sp~----~~~l~s~ 346 (579)
..+....+.|.+.|.|.+|||+|.+|++|+.|.+|++.-++.... -..+.-|.+.|..++|-.+ +.+|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 456667788999999999999999999999999999987654322 2356779999999999753 4567766
Q ss_pred eC-CCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec--C-----CCCeEEE
Q 008050 347 SA-DRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG--H-----SRSVYGI 417 (579)
Q Consensus 347 s~-dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~--~-----~~~V~~l 417 (579)
+. |..|++-| -.+.....+.+|.+-|.++- +-+|-.+++|+.|.+|++||++-..++.+... | .+.|..+
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 54 56677777 56788999999999998774 33688999999999999999988777765531 1 2569999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEeC
Q 008050 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR----KSLYVIPA 493 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~----~~~~~~~~ 493 (579)
+..|.|++|++|..|....+||++.++.++.|..|...|.++.|+|...|+++|+.|..|++-|+... -++.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998632 23445567
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
|...+..+.|+|. ..-+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~-d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQ-DFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCc-cceeeeccCcceEEEeccC
Confidence 8888999999997 6677888999999999764
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.9e-26 Score=233.11 Aligned_cols=237 Identities=22% Similarity=0.383 Sum_probs=211.2
Q ss_pred EEEEc-cCCCEEEEEeCCCcEEEEeCCC-------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC--c
Q 008050 333 DVTFS-PVSNHVATSSADRTARLWNTDG-------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG--V 402 (579)
Q Consensus 333 ~l~~s-p~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~--~ 402 (579)
.+..+ |.+++|++||.||.|++|+... .....++.|.+.|+.+....+++.|+++|.|-+|++|+...+ .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 3567899999999999999532 146678899999999999999999999999999999999887 5
Q ss_pred EEEEEecCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCe--EEEE--------Ee-cCCCCeEEEEEcCCCCEEEE
Q 008050 403 ELLLQEGHSRSVYGIAF-HPDGSLAASCGLDALARVWDLRTGR--SILA--------LE-GHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~-spdg~~l~sg~~dg~I~iwd~~~~~--~~~~--------~~-~~~~~I~si~~sp~g~~l~t 470 (579)
++.++..|...|.|+++ -++..++++||.|+.|.+||+.++. .+.. +. ++...|++++.+++|..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 66677789999999999 7788899999999999999999872 2222 22 77888999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 471 GGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
|+..+.|++||.++++.+..+.+|...|..+..+.+ |..++++|+||+|++||+...+++.++..|...|+++..+++-
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence 999999999999999999999999999999999987 7889999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCC
Q 008050 551 QSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~ 570 (579)
.++++|+.||.|..=++.+.
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEecCCCCcEEecccCCc
Confidence 99999999999999998874
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5e-27 Score=242.80 Aligned_cols=256 Identities=25% Similarity=0.457 Sum_probs=231.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMA 376 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~ 376 (579)
..+++.+...-.+++|+... +..|...|.++..-..++.+++|+.|..+-+|.... ..+..+.+|...|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 34455555666777888543 346888888988877789999999999999999543 45566899999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCe
Q 008050 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPV 456 (579)
Q Consensus 377 ~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I 456 (579)
|+....+|+.|+.+|+|++||++.++.+..+.+|...+.++.|+|.+.+++.|+.|+.+++||++...+.+.+.+|...+
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC
Q 008050 457 LGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 536 (579)
.++.|+|+|++++.|+.|.+++|||+..|+.+..|..|.+.+..+.|+|. ..++++|+.|+++++||+++++.+.....
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccCC
Confidence 99999999999999999999999999999999999999999999999995 88999999999999999999999999988
Q ss_pred CCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 537 HEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 537 h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
....|.++.|++++..+++|....
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 888999999999999888886553
No 111
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.2e-25 Score=225.07 Aligned_cols=289 Identities=22% Similarity=0.307 Sum_probs=235.8
Q ss_pred cceEEeee--cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCE--EEEEeC
Q 008050 273 VESLYLDC--TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH--VATSSA 348 (579)
Q Consensus 273 ~~~~~l~~--~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~--l~s~s~ 348 (579)
+..|...+ ...||++.|.|++..+.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|+|.+.. |+++-.
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 44444333 446999999999999999999999999999999999999999887 4568999999997653 333332
Q ss_pred CCcEEEEe---------------------------------CC-----CCeeEEEecccCCeEEEEEecCCCEEEEEeCC
Q 008050 349 DRTARLWN---------------------------------TD-----GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD 390 (579)
Q Consensus 349 dg~I~iwd---------------------------------~~-----~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d 390 (579)
+++.|-+ .. ..-+.....|...|..+.||..|.||++..-+
T Consensus 464 -~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 464 -ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred -CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 2343333 11 01123444578899999999999999997764
Q ss_pred ---CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 008050 391 ---KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 391 ---g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
..|.|+++.......-+....+.|.++.|||...+|++++ ...|+|||+.....+..+......|.+++++|+|..
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 5799999988777666666678899999999988888876 578999999988888777777788999999999999
Q ss_pred EEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC---------CeEEEEecCC
Q 008050 468 LATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD---------FKLVKSLSGH 537 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~---------~~~~~~l~~h 537 (579)
|++|+.|+.+..||+.-. ++..++..|...+++|+|++. -.+|++|+.||++.||.-.- --+++.+.+|
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 999999999999999754 567788899999999999985 77899999999999996321 1356788888
Q ss_pred CCc----EEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 538 EAK----VTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 538 ~~~----V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
... |.++.|+|...+|+++|.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 766 8999999999999999999999999
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=209.47 Aligned_cols=251 Identities=22% Similarity=0.370 Sum_probs=208.3
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-------------------CeeEEEecccCCeEEEEEecCCC
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-------------------SLLNTFQGHLDRLARMAFHPSGK 382 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-------------------~~~~~~~~h~~~I~~l~~sp~~~ 382 (579)
..+..|...+.+-+|++||.++++|+.|..|+|.|++. -.+.++..|.+.|+++.|||...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45577999999999999999999999999999999541 24677888999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCCeE
Q 008050 383 YLGTTSFDKTWRLWDVDTGVELLLQ--EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL---EGHVKPVL 457 (579)
Q Consensus 383 ~l~s~s~dg~I~lwd~~~~~~~~~~--~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~I~ 457 (579)
.|++|+.|++|++||+..-.....+ ......|.++.|||.|.+|++|.....+++||+.+.++.... ..|.+.|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 9999999999999999754322211 123457999999999999999999999999999998887654 46888999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-CCC-CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec
Q 008050 458 GISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHS-NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 458 si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~-~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 535 (579)
++.++++|++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..+ +.|+++.+.|..+++|.+.+++++..+.
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceEEEEe
Confidence 99999999999999999999999999999998885 354 46888999985 8999999999999999999999999887
Q ss_pred CCC--C---cEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcc
Q 008050 536 GHE--A---KVTSLDIHPDEQSIATVS-HDRWIKLWSTRNKGDE 573 (579)
Q Consensus 536 ~h~--~---~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~~~~~~ 573 (579)
|-. + --+...|+....|++.-. ..+.+.-||.++....
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 531 1 124556777777766554 3467888888765443
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.5e-24 Score=201.85 Aligned_cols=283 Identities=18% Similarity=0.299 Sum_probs=225.4
Q ss_pred cCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCe----------eEEE-----EeCCCCCeEEEEEcc-CCCEEEE
Q 008050 283 SGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPRLQ----------KFSA-----LKGHTERATDVTFSP-VSNHVAT 345 (579)
Q Consensus 283 ~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~~----------~~~~-----l~~h~~~V~~l~~sp-~~~~l~s 345 (579)
.-|.+.|+++.+.+ .|+|+++|+.||.|.+||+++.. .... -.+|.-.|.++.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999987 58999999999999999997533 1111 135778899999999 5567888
Q ss_pred EeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecC---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCC
Q 008050 346 SSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPS---GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD 422 (579)
Q Consensus 346 ~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~---~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd 422 (579)
++.|.++++||.+.-....-....+.|.+-+++|- .-++++|..+-.|++.|+.+|.....+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999887665555566778888888883 336778888899999999999999999999999999999997
Q ss_pred CC-EEEEEeCCCeEEEEeCCCC-eEEEEE--------------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 008050 423 GS-LAASCGLDALARVWDLRTG-RSILAL--------------EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK 486 (579)
Q Consensus 423 g~-~l~sg~~dg~I~iwd~~~~-~~~~~~--------------~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~ 486 (579)
.. .|++|+.||.|++||++.. .+...+ ..|.+.+++++|+.+|.++++++.|..+++|+..+|.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 66 6789999999999999864 333333 2466789999999999999999999999999998875
Q ss_pred eeEEEe---CCCCC----eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC
Q 008050 487 SLYVIP---AHSNL----ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 487 ~~~~~~---~~~~~----V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
....-. .|+.. +. +. +-+ ...++---.++.+.++++-.+..+..+.+|-..|.+..+.++-+...+|+.|
T Consensus 280 ntl~~~g~~~~n~~~~~~~~-~~-~~~-s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVH-IQ-SMD-SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred ccccccccccccccccceEE-Ee-ecc-cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence 432111 12111 11 22 222 2233334556899999999999999999998889999999998899999999
Q ss_pred CeEEEEEcC
Q 008050 560 RWIKLWSTR 568 (579)
Q Consensus 560 g~I~iW~~~ 568 (579)
+.|..|...
T Consensus 357 ~ni~~w~p~ 365 (397)
T KOG4283|consen 357 GNIYMWSPA 365 (397)
T ss_pred Ccccccccc
Confidence 999999873
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-25 Score=234.25 Aligned_cols=282 Identities=26% Similarity=0.405 Sum_probs=227.1
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe----eEEEEeCC---CCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ----KFSALKGH---TERATDVTFSP-VSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~----~~~~l~~h---~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~ 358 (579)
....++...++-+.|++++ ...++||.++... +...++.. .-.+..|.|+. +.++|++++..|.|.+||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 3456667778887777776 4567788765322 11111111 12356678874 45789999999999999965
Q ss_pred C----CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEeCC
Q 008050 359 G----SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCGLD 432 (579)
Q Consensus 359 ~----~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~d 432 (579)
. +.+..|..|...+++++||+.. .+|++|+.||+|++||++..+...++.+....|..+.|+| .+..|+++...
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 4 5666889999999999999865 5889999999999999999998888888889999999999 67799999999
Q ss_pred CeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEeCCCCCeEEEEEeeCCCe
Q 008050 433 ALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK--SLYVIPAHSNLISQVKFEPQEGY 509 (579)
Q Consensus 433 g~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~--~~~~~~~~~~~V~~v~~sp~~~~ 509 (579)
|.+++||+|.. ++...+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+ .+.++.. ..+|..|.|-|...+
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccc
Confidence 99999999975 4667889999999999999999999999999999999998654 3444433 467999999999888
Q ss_pred EEEEEEC--CCEEEEEECCC-CeEEEEecCCCCcEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCC
Q 008050 510 FLVTGSY--DMTVKVWSGRD-FKLVKSLSGHEAKVTSLDIHP-DEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 510 ~l~sgs~--dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
.|++++. |-.|+|||++- .-+..++..|...++.++|.. |-..|.+++.||+|..-.+++.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 8888764 78899999864 556778889999999999965 4567899999998876655543
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=227.05 Aligned_cols=276 Identities=19% Similarity=0.313 Sum_probs=230.1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL-QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL 361 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~ 361 (579)
.+|..+.+.++|.++|++|++++.||.|++|+.... +....+..+...|.+++-. +++|++|+.+++|.+|.+....
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 478899999999999999999999999999998766 4445555577788887764 5699999999999999965433
Q ss_pred e-EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 362 L-NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 362 ~-~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
. ..+....-++.+++|+-+|++++.|+.|-.|++.++........+.+|..+|.++.|+|.+++|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 2 344556678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecC--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC--CCCCeEEEEEeeCCCeE
Q 008050 441 RTGRSILALEGH--------VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFEPQEGYF 510 (579)
Q Consensus 441 ~~~~~~~~~~~~--------~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp~~~~~ 510 (579)
.++....++.+- ...+..++|+|+|..|+..+.|+.|++|+...+...+.+.. +...++.+.|+|. |.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn-G~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN-GKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC-CcE
Confidence 998877666431 34567899999988888888999999999999888887764 4455999999995 999
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
|++++.||.|.|||..+... ......|++++|.|+++.|-.....|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999987222 2234569999999998876555555554444
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.3e-25 Score=201.63 Aligned_cols=252 Identities=22% Similarity=0.348 Sum_probs=207.7
Q ss_pred eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC----CeeEEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEEEC
Q 008050 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNTDG----SLLNTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDV 398 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~----~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd~ 398 (579)
..|.+.|.++...-.|..|++|+.|++|+|+...+ +.+..+.+|.++|..++|.. .|.+|+++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 46899999998888899999999999999999432 56788999999999999966 7899999999999999999
Q ss_pred CCCcE--EEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCeEEEEEcCC---C---
Q 008050 399 DTGVE--LLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTG---RSILALEGHVKPVLGISFSPN---G--- 465 (579)
Q Consensus 399 ~~~~~--~~~~~~~~~~V~~l~~spd--g~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~I~si~~sp~---g--- 465 (579)
.++.- ......|...|++++|-|. |-+|++++.||.|.|.+.++. ........|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88743 3345689999999999985 568999999999999998765 223345678889999999995 4
Q ss_pred --------CEEEEEeCCCcEEEEECCCCc--eeEEEeCCCCCeEEEEEeeCC---CeEEEEEECCCEEEEEECCCC--e-
Q 008050 466 --------YHLATGGEDNTCRIWDLRKRK--SLYVIPAHSNLISQVKFEPQE---GYFLVTGSYDMTVKVWSGRDF--K- 529 (579)
Q Consensus 466 --------~~l~tgs~Dg~I~iwDl~~~~--~~~~~~~~~~~V~~v~~sp~~---~~~l~sgs~dg~I~iwd~~~~--~- 529 (579)
+.|++|+.|+.|+||+..++. .-.++.+|...|..++|.|.. ..+|++++.||++.||....- .
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 679999999999999988753 334588999999999999964 358999999999999975421 1
Q ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 530 LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 530 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
....+......+..+.||..|+.|+.++.|+.|.+|.-+..++...+
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence 11223334567999999999999999999999999997766655443
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7e-25 Score=217.39 Aligned_cols=239 Identities=21% Similarity=0.312 Sum_probs=204.9
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC--------
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-------- 357 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-------- 357 (579)
-++|.|++-+|+|.||+.|+..|.|++|.+.+|..+..+.+|...|+|+.|+.||.+|++||.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 467999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred --CCCeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 358 --DGSLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 358 --~~~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
..+....+..|.-.|+++...+. ..+|++++.|.++++||+..+..+... .....+.+++..|-+..+++|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCcc
Confidence 23578889999999999998765 359999999999999999999887776 4567899999999999999999999
Q ss_pred eEEEEeCCC----------------CeEEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC
Q 008050 434 LARVWDLRT----------------GRSILALEGHVK--PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS 495 (579)
Q Consensus 434 ~I~iwd~~~----------------~~~~~~~~~~~~--~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~ 495 (579)
.|.+.++.. +..+..+.+|.+ .|+|++++-||..|++|+.||+++|||+.+.++++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 999988743 234566778888 99999999999999999999999999999999999988678
Q ss_pred CCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 496 NLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
++|+.+.+.|-....+..-.....+..|++
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHh
Confidence 899999996643333332333334444443
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.1e-24 Score=226.23 Aligned_cols=241 Identities=24% Similarity=0.359 Sum_probs=207.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-C-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTD-G-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE 403 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~ 403 (579)
+|....+.|+|.++|.+|++++.||.|++|+.. . ..-..+..+...|.+++.. +.+|++|+.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 688899999999999999999999999999932 2 2333333366677777654 55999999999999999998876
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 008050 404 LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 404 ~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~ 483 (579)
-..+....-++.+++|+.+|++++.|+.|-.|++.++........+.+|..+|.++.|+|++++|++.+.||.|+|||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 65555666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeC-------C-CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC--CCCcEEEEEEcCCCCEE
Q 008050 484 KRKSLYVIPA-------H-SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--HEAKVTSLDIHPDEQSI 553 (579)
Q Consensus 484 ~~~~~~~~~~-------~-~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~L 553 (579)
++.+..++.. . ...+..++|+|+++.+++. +.|+.|++|+..+|.....+.. +...+..+.|+|+|+||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 9887776643 1 3457889999997766554 5689999999999999888853 45569999999999999
Q ss_pred EEEEcCCeEEEEEcCC
Q 008050 554 ATVSHDRWIKLWSTRN 569 (579)
Q Consensus 554 ~s~s~Dg~I~iW~~~~ 569 (579)
++++.||.|.|||+.+
T Consensus 248 AAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDT 263 (933)
T ss_pred eeeccCCcEEEEeccc
Confidence 9999999999999985
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.3e-24 Score=224.29 Aligned_cols=241 Identities=21% Similarity=0.421 Sum_probs=213.3
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee---EEEecccCCeEE-EEEec-CCCEEEEEeCCCe
Q 008050 318 LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL---NTFQGHLDRLAR-MAFHP-SGKYLGTTSFDKT 392 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~---~~~~~h~~~I~~-l~~sp-~~~~l~s~s~dg~ 392 (579)
.+..+.+.+|...|..+++.. +..++++|.||++++|+..++.. ..+.+|.+-|.. +++.+ ++-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 455677889999999988765 45799999999999999655433 447778888877 88876 4446999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 393 WRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 393 I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs 472 (579)
+.+|...+...+.++.+|...|+|++...++. +++|+.|.++++|-. +++...+.+|...|.++.+-|.+ .++|||
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999999999999999999999999888886 999999999999965 66777799999999999999987 889999
Q ss_pred CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCE
Q 008050 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS 552 (579)
Q Consensus 473 ~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 552 (579)
.|.+|++|.- ++.+.+|.+|...|..+++-++ ..|++++.||.|++|++ +++++..+.+|.+.|.++....++..
T Consensus 159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred CcceeeeccC--CchhhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 9999999974 8899999999999999999975 34789999999999998 88999999999999999998888889
Q ss_pred EEEEEcCCeEEEEEcC
Q 008050 553 IATVSHDRWIKLWSTR 568 (579)
Q Consensus 553 L~s~s~Dg~I~iW~~~ 568 (579)
|+++|.|++++||+..
T Consensus 234 Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCceEEEeecC
Confidence 9999999999999976
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=203.84 Aligned_cols=263 Identities=29% Similarity=0.479 Sum_probs=226.5
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEe
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFH 378 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~s 378 (579)
.|++...+++++ ...++.+.||.+.|+.++.......+.+++.|.+.+||.+ .+.++.++.+|.+.|+++.||
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 344555566543 2455677899999999999888889999999999999995 568899999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEC------CC------------------------------C----cEEEEEecCCCCeEEEE
Q 008050 379 PSGKYLGTTSFDKTWRLWDV------DT------------------------------G----VELLLQEGHSRSVYGIA 418 (579)
Q Consensus 379 p~~~~l~s~s~dg~I~lwd~------~~------------------------------~----~~~~~~~~~~~~V~~l~ 418 (579)
+.+.++++++.|++-.||.. .. + ..+..+.+|...|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 99999999999999999962 00 0 12345678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeCCCCC
Q 008050 419 FHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNL 497 (579)
Q Consensus 419 ~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~ 497 (579)
|...|+.+++++.|.+..+||+.+|..+..+.+|....+.++-+|+.+++++++.|.+.++||++. -..+..|.+|...
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 3457788999999
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|+++.|.. +..+++|+.|.+|++||+++.. .+.++. ..++++.++++..+..|+.--.++.|++||++...
T Consensus 360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 99999996 4678999999999999998865 666666 45679999999888888888888999999997543
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=229.86 Aligned_cols=252 Identities=18% Similarity=0.326 Sum_probs=187.3
Q ss_pred eEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecc-----------cCCeEEEEEec---CCC--
Q 008050 320 KFSALK-GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGH-----------LDRLARMAFHP---SGK-- 382 (579)
Q Consensus 320 ~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h-----------~~~I~~l~~sp---~~~-- 382 (579)
....+. .|.+.|+++.|++||+|||+||.||.|+||.+........... .+.+..+..+. .++
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 7999999999999999999999999999999544222111100 00011111111 001
Q ss_pred EEEEEeCCCeEEEEECC----CCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEE
Q 008050 383 YLGTTSFDKTWRLWDVD----TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLG 458 (579)
Q Consensus 383 ~l~s~s~dg~I~lwd~~----~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~s 458 (579)
..-.+..... .+.+.. ..+.+..+.||.+.|.++.|+.++ +|++++.|.+|++|++....++..|. |..-|+|
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1111112222 122211 234566778999999999999765 99999999999999999999999987 9999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-
Q 008050 459 ISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG- 536 (579)
Q Consensus 459 i~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~- 536 (579)
|+|+| |.+||++|+-||.|+||++...+.+.-...+ ..|+.++|.|+ |.+.+.|+.+|.+++|+....++...+..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 99999 7899999999999999999887777666665 78999999998 88999999999999999998887665531
Q ss_pred -C------CCcEEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 537 -H------EAKVTSLDIHPDE-QSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 537 -h------~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
| ...|+++.|.|.. ..|++.+.|..|+|||.+....+..+
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence 1 2279999998743 34777778999999999776665544
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=197.61 Aligned_cols=244 Identities=21% Similarity=0.356 Sum_probs=200.9
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC---eeEEEEeCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEE
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL---QKFSALKGHTERATDVTFSP--VSNHVATSSADRTARLW 355 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~sp--~~~~l~s~s~dg~I~iw 355 (579)
....|+.-|-.+...-.|+.|+|++.|++|+||.+.+. +.+.++.+|.++|..++|.. .|.+|+++++||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34567777777777888999999999999999998753 56788999999999999976 79999999999999999
Q ss_pred eCCCC---eeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCeEEEEEcCC---C-
Q 008050 356 NTDGS---LLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTG---VELLLQEGHSRSVYGIAFHPD---G- 423 (579)
Q Consensus 356 d~~~~---~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~---~~~~~~~~~~~~V~~l~~spd---g- 423 (579)
...+. .......|...|++++|.|. |-.|++++.||.|.+++.++. ........|.-.|++++|.|- |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 96553 44556789999999999885 458999999999999998765 223345689999999999985 4
Q ss_pred ----------CEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEECCCCc-
Q 008050 424 ----------SLAASCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSPNG----YHLATGGEDNTCRIWDLRKRK- 486 (579)
Q Consensus 424 ----------~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~g----~~l~tgs~Dg~I~iwDl~~~~- 486 (579)
..|++|+.|..|+||+..++. .-.++.+|...|..++|.|.- .+|++++.||++.||..+...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 469999999999999998864 334588999999999999953 689999999999999876321
Q ss_pred --eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 487 --SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 487 --~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
....+......+..+.|+.. |++|+.++.|+.|.+|.-
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~s-Gn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLS-GNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cccccccccCCcceEEEEEecc-ccEEEEecCCcEEEEEEe
Confidence 11222334567999999995 899999999999999964
No 123
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.8e-25 Score=212.01 Aligned_cols=243 Identities=21% Similarity=0.379 Sum_probs=208.1
Q ss_pred EEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 008050 323 ALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~ 400 (579)
.+.+|.+.|.|++-+|.. ..+++|+.||.|+|||+.. .+...+..|.+.|..++++. ..+++++.|.+|+.|-++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 346799999999999977 7799999999999999665 67789999999999999986 6789999999999999876
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEE
Q 008050 401 GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRI 479 (579)
Q Consensus 401 ~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~i 479 (579)
. ...++.+ .+.+..+.-+..++.+++||. .|.|||..-..++..+.-....|.++.|+|.. ..|++|..|+.|.+
T Consensus 139 ~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 139 P-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred C-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 3 4444433 456778888877888888874 58899999999999998888889999999965 56677779999999
Q ss_pred EECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-eEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-KLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 480 wDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
||++.+.++..+.. ...-+.++|+| +...|++|+.|.+++.||++.. ..+..+.+|.+.|.+++|||.|+-+++||.
T Consensus 215 yD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 215 YDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred EecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 99999999887754 24457799999 6888999999999999999875 477788999999999999999999999999
Q ss_pred CCeEEEEEcCCCCcc
Q 008050 559 DRWIKLWSTRNKGDE 573 (579)
Q Consensus 559 Dg~I~iW~~~~~~~~ 573 (579)
|.+|+||..+.+...
T Consensus 293 DksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSR 307 (433)
T ss_pred cceEEEeecCCCcch
Confidence 999999999876543
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-25 Score=232.29 Aligned_cols=235 Identities=24% Similarity=0.468 Sum_probs=218.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCC
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGS 360 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~ 360 (579)
...|...|.|+..-..++.+++|++|..+-+|.+.....+..+.+|..+|.++.|+....+|+.|+.+|+|++||+ ..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 3467888888888778899999999999999999988888889999999999999999999999999999999995 457
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
.+.++.+|...+.++.|+|-+.|++.|+.|+.+++||++...+...+.+|...+.++.|+|+|.+++.|+.|..++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 78899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 441 RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
..|+.+..|+.|.+.+.++.|+|...++++|+.|+++++||+++...+.........|.+..|+++ +..+.+|...
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~-~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD-GKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC-ceeeecCchh
Confidence 999999999999999999999999999999999999999999999988888887888999999997 6777776554
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.2e-23 Score=196.23 Aligned_cols=244 Identities=23% Similarity=0.269 Sum_probs=201.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~ 406 (579)
....|.++.|++.++.|++++.||++++|+.....+.....|..++.+++|.+ ...+++|+.||.|+.+|++++.....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence 46789999999999999999999999999988777777777999999999996 55799999999999999999877665
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK 486 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~ 486 (579)
. .|...|.||.+++....+++|+.|+.|++||.+....+..+.... .|.++.. .|+.|++|+.|..+.+||+++..
T Consensus 91 g-th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 G-THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred c-cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 4 789999999999988899999999999999999866666665433 6888777 46689999999999999999876
Q ss_pred eeEEEeC--CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC----eEEEEecCCC---------CcEEEEEEcCCCC
Q 008050 487 SLYVIPA--HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----KLVKSLSGHE---------AKVTSLDIHPDEQ 551 (579)
Q Consensus 487 ~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----~~~~~l~~h~---------~~V~~l~~s~dg~ 551 (579)
....... -...+.++++.|. +.=+++++-||.|.+=.++.. +.-..|+.|. -+|++++|+|-.+
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 5543322 2456889999995 555677889999988766654 3344555553 3589999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCCccccc
Q 008050 552 SIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 552 ~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
.|+|||.||.|.+||+.+++....+
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhc
Confidence 9999999999999999988766544
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=209.14 Aligned_cols=279 Identities=15% Similarity=0.255 Sum_probs=233.0
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-eEEEEeCC-CCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCee
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-KFSALKGH-TERATDVTFSPVSNHVATSSADRTARLWN-TDGSLL 362 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-~~~~l~~h-~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~ 362 (579)
-++|.+++|+.+.+.||.+-.+|.|.||++...- ....+.++ ...|.+++|+ .+..|++.+.+|.|.-|| .+.+..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 5689999999999999999999999999997643 33445554 4589999999 566788999999999999 566888
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL--QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~--~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
..+....+.|++++.+|.+..+++|+.||.++.+++..+..... +....+.|.+++|++++..+++|+.||.|++||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 88888999999999999999999999999888888877765443 2344578999999999999999999999999999
Q ss_pred CCCeEEEEEe--------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 441 RTGRSILALE--------GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 441 ~~~~~~~~~~--------~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
.++..+.... ....-|.++.|-.++ .|++|..-|+|.+||...+..+..+..|...|.+++..++ +.+++
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~-~d~vf 261 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN-EDRVF 261 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC-CCeEE
Confidence 9988766221 122347788887555 7999999999999999999999999999999999999985 77888
Q ss_pred EEECCCEEEEEECCCCe----EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 513 TGSYDMTVKVWSGRDFK----LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
+++.|+.|..|...+.+ .......|...|.+++..++ .|++||.|+++.+-....
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 99999999988866543 33344578888999999865 899999999998876654
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-23 Score=194.36 Aligned_cols=246 Identities=21% Similarity=0.426 Sum_probs=197.0
Q ss_pred eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CeeEEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEEE
Q 008050 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-----SLLNTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-----~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd 397 (579)
.+|.+-|+++.|...|+.+++|+.|++|+|||.+. ......+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999432 35567788999999999965 588999999999999997
Q ss_pred CCC---------CcEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeEE------EEEe-------cCC
Q 008050 398 VDT---------GVELLLQEGHSRSVYGIAFHP--DGSLAASCGLDALARVWDLRTGRSI------LALE-------GHV 453 (579)
Q Consensus 398 ~~~---------~~~~~~~~~~~~~V~~l~~sp--dg~~l~sg~~dg~I~iwd~~~~~~~------~~~~-------~~~ 453 (579)
-.. ......+....+.|++++|.| -|-.+++++.||.++||+.-.--.+ ..+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 122344556778999999999 4678999999999999986543222 2222 355
Q ss_pred CCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----ceeEEEeCCCCCeEEEEEeeCCC---eEEEEEECCC
Q 008050 454 KPVLGISFSPN---GYHLATGGED-----NTCRIWDLRKR----KSLYVIPAHSNLISQVKFEPQEG---YFLVTGSYDM 518 (579)
Q Consensus 454 ~~I~si~~sp~---g~~l~tgs~D-----g~I~iwDl~~~----~~~~~~~~~~~~V~~v~~sp~~~---~~l~sgs~dg 518 (579)
.+..|+.|++. ..+|++|+.+ +.++||....+ ..+.++..|..+|+.++|.|.-| ++|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 66889999973 4678888865 47889976543 34556778999999999999644 4789999999
Q ss_pred EEEEEECCC--------------------CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 519 TVKVWSGRD--------------------FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 519 ~I~iwd~~~--------------------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|+||.+.. -+.+..+.+|.+.|..+.|+-.|..|.+.|.||+|++|..+-..
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 99999773 13566788999999999999999999999999999999875433
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.9e-23 Score=194.78 Aligned_cols=245 Identities=18% Similarity=0.240 Sum_probs=194.4
Q ss_pred CCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC--Ce-eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q 008050 326 GHTERATDVTFSPV-SNHVATSSADRTARLWNTDG--SL-LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG 401 (579)
Q Consensus 326 ~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~--~~-~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~ 401 (579)
...+.|.+|+|||. ..+++.+|.||+|++|+++. .. -.....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 46678999999994 45666899999999999654 22 2445678999999999999999999999999999999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008050 402 VELLLQEGHSRSVYGIAFHPDGS--LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479 (579)
Q Consensus 402 ~~~~~~~~~~~~V~~l~~spdg~--~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~i 479 (579)
+... ...|..+|.++.|-+... +|++|+.|.+|+.||+|+...+.++.-.. .++++..- ..+++++..+..|.+
T Consensus 105 Q~~~-v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QVSQ-VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred Ceee-eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhcc--CceeEEEecCCcEEE
Confidence 5544 458999999999988655 89999999999999999999998887544 36666654 347888999999999
Q ss_pred EECCCCceeEEE-eC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC--eEEEEecCCCC---------cEEEEEE
Q 008050 480 WDLRKRKSLYVI-PA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF--KLVKSLSGHEA---------KVTSLDI 546 (579)
Q Consensus 480 wDl~~~~~~~~~-~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~---------~V~~l~~ 546 (579)
|+|+++...+.. .. -.-.+.+|+...+. ...+.|+-+|.+.|..+..+ +.-..|+.|.. .|++++|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 999775433321 11 23447888888764 44588999999999988776 43445555542 4788999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 547 HPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 547 s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
+|....|+|+|.||++.+||-.....+..
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhc
Confidence 99999999999999999999876555443
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=200.21 Aligned_cols=246 Identities=23% Similarity=0.458 Sum_probs=196.1
Q ss_pred EeeecccCCCCCeeEEEEcCCC--CEEEEEecCCeEEEEeCC----------------CCeeEEEEeCCCCCeEEEEEcc
Q 008050 277 YLDCTESGDDRPLSGCSYSHDG--NLLATSSLSGVVKIWSMP----------------RLQKFSALKGHTERATDVTFSP 338 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg--~~latgs~dg~I~iwd~~----------------~~~~~~~l~~h~~~V~~l~~sp 338 (579)
.+.+...+|.+.++.+.-++-+ .+.++-+..|.|+||++. ..+.+.++.+|...=+.++|||
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccc
Confidence 3555666788888888877765 456666778999999974 2456788889999999999999
Q ss_pred CC-CEEEEEeCCCcEEEEeCCCCe----eEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCC---cEEEEEec
Q 008050 339 VS-NHVATSSADRTARLWNTDGSL----LNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTG---VELLLQEG 409 (579)
Q Consensus 339 ~~-~~l~s~s~dg~I~iwd~~~~~----~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~---~~~~~~~~ 409 (579)
-. ..|++|..-+.|++|...... ...+.+|...|-.++|+|..+ .|++|+.||+|+|||++.+ ..+. .+.
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kA 300 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKA 300 (440)
T ss_pred ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eec
Confidence 43 347888888999999944322 234667999999999999654 8899999999999999988 3333 378
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 008050 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDLRT---GRSILALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 410 ~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
|.+.|+.|.|+....+|++|+.||+++|||+|+ ++++.+|+.|..+|++|.|+|. ...|++++.|.+|.|||+.--
T Consensus 301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999999999888999999999999999986 5688999999999999999994 567888899999999998532
Q ss_pred ce------------------eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 486 KS------------------LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 486 ~~------------------~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
.- +..+......+..+.|+++...+|++.+.|| +.||-
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11 1122223456888999998888999999998 55553
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=4.9e-23 Score=203.73 Aligned_cols=289 Identities=22% Similarity=0.354 Sum_probs=224.9
Q ss_pred ecccCCCCCeeEEEEcCCC--CEEEEEecCCeEEEEeCCC----CeeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcE
Q 008050 280 CTESGDDRPLSGCSYSHDG--NLLATSSLSGVVKIWSMPR----LQKFSALKGHTERATDVTFSPVS-NHVATSSADRTA 352 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg--~~latgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I 352 (579)
....-+.+.|++++|+|.. +++++|...|.|-+||+.+ ...+..+..|..+|.+|.|+|.+ ..+++.++||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3345678999999999975 5899999999999999942 33456677899999999999965 679999999999
Q ss_pred EEEeCCCCee---EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCCeEEEEEcCC-CCEEE
Q 008050 353 RLWNTDGSLL---NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE-LLLQEGHSRSVYGIAFHPD-GSLAA 427 (579)
Q Consensus 353 ~iwd~~~~~~---~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~~~~V~~l~~spd-g~~l~ 427 (579)
++-|+++... ..+......+..+.|+.+...++.+..=|...+||++++.. ......|...|++++++|- ..+|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 9999877433 33333445677888988888888888888999999998654 5566678889999999995 45899
Q ss_pred EEeCCCeEEEEeCCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEEeCC---CC
Q 008050 428 SCGLDALARVWDLRTGR----SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR----KRKSLYVIPAH---SN 496 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~----~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~----~~~~~~~~~~~---~~ 496 (579)
+++.|++++|||+|.-. ++...-.|...|.+..|||.|-.|+|.+.|+.|+|||.. ...++..+... ..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence 99999999999998642 234445699999999999988779999999999999983 33344444321 11
Q ss_pred C--eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCC-cEEE-EEEcCCCCEEEEE-EcCCeEEEEEcCC
Q 008050 497 L--ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA-KVTS-LDIHPDEQSIATV-SHDRWIKLWSTRN 569 (579)
Q Consensus 497 ~--V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~-l~~s~dg~~L~s~-s~Dg~I~iW~~~~ 569 (579)
. .....|.|+ ..++++|-+-..|-|||-..++.+..+..... .|.+ ..|+|-+..+++| +..|.|+||.-+.
T Consensus 420 wlT~fKA~W~P~-~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 420 WLTPFKAAWDPD-YNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccchhheeCCC-ccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 1 345679995 88999999999999999999998888754433 4544 3689988755555 4678889887554
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.6e-21 Score=197.02 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=194.4
Q ss_pred CeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCC-eeEE
Q 008050 288 PLSGCSYSHDGNLL-ATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADRTARLWNTDGS-LLNT 364 (579)
Q Consensus 288 ~I~~~~~spdg~~l-atgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~~~~-~~~~ 364 (579)
.+.+++|+++|+.+ ++++.++.|++||..+++....+..+.. +..++|+++++.++++ +.++.|++||+... .+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 36789999999976 5667889999999999888877765543 5788999999977655 56899999997654 3444
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCC
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDK-TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC-GLDALARVWDLRT 442 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg-~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg-~~dg~I~iwd~~~ 442 (579)
+. +...+.+++|+|+|+++++++.++ .+.+||..++....... ......+++|++++++|+++ ..++.|.+||+.+
T Consensus 111 ~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred ee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 43 334568899999999999988775 56778998876655432 23345789999999987554 4699999999999
Q ss_pred CeEEEEEecCCC-------CeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 443 GRSILALEGHVK-------PVLGISFSPNGYHLATG-GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 443 ~~~~~~~~~~~~-------~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
++.+..+..+.. ....++|+++|++++++ +.++.|.+||+++++.+..+. +...+.++.|+|+ +.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~-g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPD-EKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCC-CCEEEEE
Confidence 987766643211 23568899999986554 456789999999888776554 3457889999997 5556554
Q ss_pred -ECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC
Q 008050 515 -SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 515 -s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 548 (579)
+.+|.|.+||+.+++++..+... ...++++|+|
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 56999999999999999998754 4568888764
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.2e-24 Score=212.69 Aligned_cols=245 Identities=25% Similarity=0.379 Sum_probs=207.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----eeEEEe--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTDGS----LLNTFQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~----~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~ 399 (579)
.|..-|.++..+...+++++|+. |.|+|||+.+. .+..+. .....|.++.+++||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888999999998899999876 88999997542 333333 245678999999999999999999999999998
Q ss_pred CCcEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008050 400 TGVELLLQ--EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 400 ~~~~~~~~--~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I 477 (579)
........ ....-.++.++.+||.++.++++.||.|.|||+++...+..|++|...+.||.++++|..|.+|+-|++|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 76543322 2223457789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 478 ~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
+.||++.++.+..... .+.|.++.++|. +.+++.|-.++.+.|..... .....+.-|++-|.++.|.+.|+++++.|
T Consensus 576 RcWDlregrqlqqhdF-~SQIfSLg~cP~-~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDF-SSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eehhhhhhhhhhhhhh-hhhheecccCCC-ccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecC
Confidence 9999999987766543 467889999996 88999999999999988654 34456777999999999999999999999
Q ss_pred cCCeEEEEEcCCCCccc
Q 008050 558 HDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 558 ~Dg~I~iW~~~~~~~~~ 574 (579)
.|..+..|...-+..+.
T Consensus 653 kDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIF 669 (705)
T ss_pred chhhhhhccCcccccee
Confidence 99999999987765443
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.3e-21 Score=195.32 Aligned_cols=272 Identities=19% Similarity=0.323 Sum_probs=221.1
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE-
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT- 364 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~- 364 (579)
..-|.|++|.++|+. +||.++|.|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-+-+.+..
T Consensus 246 kk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccc
Confidence 367999999999875 6899999999999988888888789999999999999887655 9999999999944333332
Q ss_pred -EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 365 -FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 365 -~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
+....+.|..+.-...+ |++|...+.|..=.++++..+..+ +|......++.+|+..++++++.|+.+++|+ ..
T Consensus 324 elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~-gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQ-GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred cCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEE-ecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence 33445667666544333 888888888888888887766665 8889999999999999999999999999999 44
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 444 RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 444 ~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
+.+.+.. ...++.|+.|+|.| .++.|+..|...+.|..+...+ ++...+.+++.+.|+|+ |.+|+.|+.|+.|+||
T Consensus 399 k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ysp~-G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 399 KLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-TIHTDNEQLSVVRYSPD-GAFLAVGSHDNHIYIY 474 (626)
T ss_pred ceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeE-EEEecCCceEEEEEcCC-CCEEEEecCCCeEEEE
Confidence 5544443 45678999999999 9999999999999999885444 44444889999999997 8999999999999999
Q ss_pred ECCC-CeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 524 SGRD-FKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 524 d~~~-~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
-+.. +...... ..|.++|+.++||+|+++|.+-+.|-.|-+|...
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 8754 3333333 2344889999999999999999999999999443
No 134
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.7e-22 Score=189.60 Aligned_cols=266 Identities=22% Similarity=0.361 Sum_probs=206.1
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC----CCeeEEEEeCCCCCeEEEEEcc--CCCEEEEEeCCCcE
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP----RLQKFSALKGHTERATDVTFSP--VSNHVATSSADRTA 352 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~----~~~~~~~l~~h~~~V~~l~~sp--~~~~l~s~s~dg~I 352 (579)
.....+|..-|.++.|...|+.+|+|+.|++|+|||.. +..+....+.|.+.|..|.|.+ -|+.+++++.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 34567899999999999999999999999999999964 3456667789999999999976 58999999999999
Q ss_pred EEEeCCC----------CeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCcEE------EEE-------
Q 008050 353 RLWNTDG----------SLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVEL------LLQ------- 407 (579)
Q Consensus 353 ~iwd~~~----------~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~~~------~~~------- 407 (579)
.||.... ....++....+.|+.++|.|. |-.|++++.||.++||+.-.-..+ ..+
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9998411 234566777889999999994 568999999999999986542211 111
Q ss_pred ecCCCCeEEEEEcCC---CCEEEEEeCC-----CeEEEEeCCCC----eEEEEEecCCCCeEEEEEcCC----CCEEEEE
Q 008050 408 EGHSRSVYGIAFHPD---GSLAASCGLD-----ALARVWDLRTG----RSILALEGHVKPVLGISFSPN----GYHLATG 471 (579)
Q Consensus 408 ~~~~~~V~~l~~spd---g~~l~sg~~d-----g~I~iwd~~~~----~~~~~~~~~~~~I~si~~sp~----g~~l~tg 471 (579)
..+.....|+.|++. ..+|+.|+.+ +.+.||....+ ..+.++.+|..+|+.|+|.|+ -..|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 135567889999973 4578888766 47888876543 345667799999999999995 3678999
Q ss_pred eCCCcEEEEECCCC--------------------ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC---CC
Q 008050 472 GEDNTCRIWDLRKR--------------------KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR---DF 528 (579)
Q Consensus 472 s~Dg~I~iwDl~~~--------------------~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~---~~ 528 (579)
+.|| |+||.++.. +.+..+..|++.|..+.|+-. |.+|.+.|.||+|++|... .+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt-GtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT-GTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee-eeEEeecCCCceeeehhhhhhhhh
Confidence 9999 999998731 234456789999999999985 8999999999999999743 35
Q ss_pred eEEEEecCCCCcEEEEEEc
Q 008050 529 KLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 529 ~~~~~l~~h~~~V~~l~~s 547 (579)
++...+.. ++.++...|+
T Consensus 324 kC~sv~~~-e~~~~~~~~~ 341 (361)
T KOG2445|consen 324 KCTSVLKA-EGSVTKPDFS 341 (361)
T ss_pred eeeeEEec-cCCCCCcccc
Confidence 56666653 2334444443
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=5.5e-23 Score=210.46 Aligned_cols=282 Identities=22% Similarity=0.355 Sum_probs=212.1
Q ss_pred EEEEcCC---CCEEEEEecCCeEEEEeCCCCee------EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 008050 291 GCSYSHD---GNLLATSSLSGVVKIWSMPRLQK------FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS- 360 (579)
Q Consensus 291 ~~~~spd---g~~latgs~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~- 360 (579)
++.|++. ..+|+.+..+|.|.++|...... +..+..|...|..+.|-|....|++++.|.++++||+.+.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 3667653 46899999999999999865433 3455689999999999997778999999999999997653
Q ss_pred eeE--EEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcE---------------------------EEEEecC
Q 008050 361 LLN--TFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVE---------------------------LLLQEGH 410 (579)
Q Consensus 361 ~~~--~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~---------------------------~~~~~~~ 410 (579)
... .+.+|.+.|.+++|++.+. .|++|+.||.|.|||++-... +.....+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 333 3789999999999999765 788999999999999854220 0011123
Q ss_pred CCCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCeEEEEE--------ecC---CCCeEEEEEcCCCCEEEEEeCCC
Q 008050 411 SRSVYG---IAFHPDGSLAASCGL-DALARVWDLRTGRSILAL--------EGH---VKPVLGISFSPNGYHLATGGEDN 475 (579)
Q Consensus 411 ~~~V~~---l~~spdg~~l~sg~~-dg~I~iwd~~~~~~~~~~--------~~~---~~~I~si~~sp~g~~l~tgs~Dg 475 (579)
...|.+ +.+..|...|++++. |+.|+|||++........ ..| ...+.++.....|.+|++.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 334444 555567778888887 999999999976543322 223 33578888888899999999999
Q ss_pred cEEEEECCCCc--eeEEEeCCCC--CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-EEEEecCCCCcEEEEEEcCCC
Q 008050 476 TCRIWDLRKRK--SLYVIPAHSN--LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-LVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 476 ~I~iwDl~~~~--~~~~~~~~~~--~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg 550 (579)
.|++||+.... ++..+.++.. ....-..+|+ +.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd-~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD-DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCC-CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999998643 3444443322 1222345676 7899999999999999988754 455678999999999998843
Q ss_pred C-EEEEEEcCCeEEEEEcCCCCcc
Q 008050 551 Q-SIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 551 ~-~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
- -+++++.|..++||++.++.+.
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred CCCceeeccCcceEEEeccCchhh
Confidence 2 3788899999999999766543
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.5e-22 Score=209.10 Aligned_cols=290 Identities=22% Similarity=0.342 Sum_probs=237.4
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee-------EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK-------FSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~-------~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
..+.||+.-|.++.|+|.+..|++++.|.++.+|.-.+..- +..+.+.........|+++++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 45679999999999999999999999999999998765421 12223456678999999999999999999999
Q ss_pred EEEeCCC----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCCeEEEEEcCCCC
Q 008050 353 RLWNTDG----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG----VELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 353 ~iwd~~~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~----~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
++|.... .....+.+|.+.|.+++|+|.|.+|++.+.|.+-++|---.. .++..-.-|...++|++|-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 9999333 344567899999999999999999999999999999865421 12223346888899999998666
Q ss_pred EEEEEeCCCeEEEEeCC-------------------------------------------CCeE----------------
Q 008050 425 LAASCGLDALARVWDLR-------------------------------------------TGRS---------------- 445 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~-------------------------------------------~~~~---------------- 445 (579)
.+++|.....+++|+.. +|..
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 88888888999998741 0100
Q ss_pred -----------------EEEEecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEeCCCCCeEEEEE
Q 008050 446 -----------------ILALEGHVKPVLGISFSPNGYHLATGGEDN-----TCRIWDLRKRKSLYVIPAHSNLISQVKF 503 (579)
Q Consensus 446 -----------------~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg-----~I~iwDl~~~~~~~~~~~~~~~V~~v~~ 503 (579)
+..+.+|...|++++.+|+|+++++++... .|++|+..+...++.+..|+-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 011225778899999999999999998543 5999999999999999999999999999
Q ss_pred eeCCCeEEEEEECCCEEEEEECCCCe----EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRDFK----LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+|+ +.||++.+.|.++.+|...... .....+.|..-|++++|+|++.+++|+|.|.+|++|...+.
T Consensus 581 Spd-g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPD-GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCC-CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 997 8999999999999999864322 23346789999999999999999999999999999999877
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3.2e-23 Score=213.79 Aligned_cols=244 Identities=20% Similarity=0.317 Sum_probs=212.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCC-
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSP---VSNHVATSSADRTARLWNTD- 358 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp---~~~~l~s~s~dg~I~iwd~~- 358 (579)
.+....|.+++.||+|++||+|..-|+++||++.+.+....+..|...|.|+.|+. ..++|++++.|..|++||..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567899999999999999999999999999999999999999999999999986 35789999999999999954
Q ss_pred -CCeeEEEecccCCeEEEEEecCC--CEEEEEeCCCeEEEEECCCCcEEEEE-----ecCCCCeEEEEEcCCCCEEEEEe
Q 008050 359 -GSLLNTFQGHLDRLARMAFHPSG--KYLGTTSFDKTWRLWDVDTGVELLLQ-----EGHSRSVYGIAFHPDGSLAASCG 430 (579)
Q Consensus 359 -~~~~~~~~~h~~~I~~l~~sp~~--~~l~s~s~dg~I~lwd~~~~~~~~~~-----~~~~~~V~~l~~spdg~~l~sg~ 430 (579)
-..+.++.+|...|+++.|.-+| ..+++++.|..|.+--.........+ ......++.++..|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 45778899999999999999887 68999999988765433321111111 12235799999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCC
Q 008050 431 LDALARVWDLRTGRSILALEG---HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 431 ~dg~I~iwd~~~~~~~~~~~~---~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~ 507 (579)
.|..|+|||+.+|+....|++ |.+....+...|.|.||++.+.|.++.++|+.+++++....+|...|+.+.|.++
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD- 694 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND- 694 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc-
Confidence 999999999999999999975 5567888999999999999999999999999999999999999999999999997
Q ss_pred CeEEEEEECCCEEEEEECCC
Q 008050 508 GYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 508 ~~~l~sgs~dg~I~iwd~~~ 527 (579)
...|++.+.||.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 78899999999999998753
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8e-24 Score=220.84 Aligned_cols=240 Identities=22% Similarity=0.411 Sum_probs=197.7
Q ss_pred eeEEEEcC-CCCEEEEEecCCeEEEEeCCC---CeeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCC-CCee
Q 008050 289 LSGCSYSH-DGNLLATSSLSGVVKIWSMPR---LQKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTD-GSLL 362 (579)
Q Consensus 289 I~~~~~sp-dg~~latgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~-~~~~ 362 (579)
+..+.|+. +.++|||++..|.|.+||+.. .+.+..|..|...++++.|++. ..+|++|+.||+|++||+. .+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34566763 468999999999999999987 5666778899999999999985 4678999999999999954 4566
Q ss_pred EEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 363 NTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
.++.+....|..+.|+| .+.+|+++...|.+.+||++.. .....+..|.+.|.|+.|+|++.+|++||.|+.|+|||+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 77778888999999999 5678999999999999999875 445566799999999999999999999999999999999
Q ss_pred CCCeEEEEEec-CCCCeEEEEEcCC-CCEEEEEe--CCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 441 RTGRSILALEG-HVKPVLGISFSPN-GYHLATGG--EDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 441 ~~~~~~~~~~~-~~~~I~si~~sp~-g~~l~tgs--~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
.+++....... ...+|.++.|-|. .++|++++ .|-.|+|||++.. -+..++..|...++.++|......++.+++
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCS 329 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeec
Confidence 87654332222 3467999999995 46677766 5778999999864 456688899999999999876577899999
Q ss_pred CCCEEEEEECCCC
Q 008050 516 YDMTVKVWSGRDF 528 (579)
Q Consensus 516 ~dg~I~iwd~~~~ 528 (579)
.||+|..-.+++.
T Consensus 330 KD~tv~qh~~kna 342 (839)
T KOG0269|consen 330 KDGTVLQHLFKNA 342 (839)
T ss_pred CccHHHHhhhhcc
Confidence 9998876655544
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.4e-22 Score=198.35 Aligned_cols=276 Identities=22% Similarity=0.274 Sum_probs=203.6
Q ss_pred EEcCCCCEEEEEecC---Ce--EEEEeCCCCeeEEEEeCCC----CCeEEEEEcc-------CCCEEEEEeCCCcEEEEe
Q 008050 293 SYSHDGNLLATSSLS---GV--VKIWSMPRLQKFSALKGHT----ERATDVTFSP-------VSNHVATSSADRTARLWN 356 (579)
Q Consensus 293 ~~spdg~~latgs~d---g~--I~iwd~~~~~~~~~l~~h~----~~V~~l~~sp-------~~~~l~s~s~dg~I~iwd 356 (579)
..-|..++|+++-.+ .. |+||+-.... +. -.|. ..-.|+.|.. .|+++|.|+.|..|.|||
T Consensus 132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-lY--vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 132 QVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-LY--VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred eeccCCcEEEEeeccCCceEEEEEEEcCCCcc-ee--EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence 355666777776533 23 4455432211 11 1121 2235677754 368999999999999999
Q ss_pred CCC--C--eeE------------------EEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCC
Q 008050 357 TDG--S--LLN------------------TFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRS 413 (579)
Q Consensus 357 ~~~--~--~~~------------------~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~ 413 (579)
++= . +.. .-.+|...|..+.|+..- +.|++||.|.+|++||+.++++...+..|.+.
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~ 288 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK 288 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc
Confidence 531 0 111 123577788888888754 48899999999999999999999999999999
Q ss_pred eEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-ceeEE
Q 008050 414 VYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKR-KSLYV 490 (579)
Q Consensus 414 V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~-~~~~~ 490 (579)
|.++.|+|. ..+|++|+.|+++.++|.|........-...+.|-.++|.+. ...+++++.||+|+-+|+|+. +++++
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 999999994 568999999999999999953322222224456899999994 467888889999999999985 99999
Q ss_pred EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE--EEEecCCCCcEEEEEEcCCCCE-EEEEEcCCeEEEEEc
Q 008050 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL--VKSLSGHEAKVTSLDIHPDEQS-IATVSHDRWIKLWST 567 (579)
Q Consensus 491 ~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~I~iW~~ 567 (579)
+.+|...|++++++.....++++++.|+.|++|++..-.. +..-.-.-+...|.++.|+-.+ ++.||..+.++|||+
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 9999999999999998889999999999999999764332 2211111233566677776544 778888889999999
Q ss_pred CCCC
Q 008050 568 RNKG 571 (579)
Q Consensus 568 ~~~~ 571 (579)
.+..
T Consensus 449 ~~~~ 452 (463)
T KOG0270|consen 449 FTNS 452 (463)
T ss_pred ccCh
Confidence 7654
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=6.1e-21 Score=190.67 Aligned_cols=281 Identities=21% Similarity=0.339 Sum_probs=228.5
Q ss_pred CCCCCeeEEEEcCC--CCEEEEEe--cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 284 GDDRPLSGCSYSHD--GNLLATSS--LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 284 gh~~~I~~~~~spd--g~~latgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
..+..|.|++||+- |.+|+... .+..+.+||.+.+......+..+..|....|+|.+..|+.....|.+..|+..+
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 56789999999974 55665543 456799999999988888888889999999999887777777779999999776
Q ss_pred CeeEE----Eec-ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 360 SLLNT----FQG-HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 360 ~~~~~----~~~-h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
..+.. +.. ....|.|++|.++|+ +++|..+|.|.||+..+.+.......|.+.|.+++...+|.+|- |+.|..
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce
Confidence 54333 222 236799999999985 78999999999999988877776669999999999999996555 999999
Q ss_pred EEEEeCCCCe----------------------------------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 435 ARVWDLRTGR----------------------------------------SILALEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 435 I~iwd~~~~~----------------------------------------~~~~~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
|..||-.-.+ ......+|......++.+|+...+++++.|
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 9999821000 001123567778889999999999999999
Q ss_pred CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEE
Q 008050 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 554 (579)
+.+++|+ ..+.+.+... ..++.++.|+|. + .++.|+..|...+.|..+..++..-.. ..+++.+.|+|+|.+|+
T Consensus 390 k~v~lW~--~~k~~wt~~~-~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKII-EDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ceEEEcc--CCceeEEEEe-cCceeEeeccCc-c-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEE
Confidence 9999999 5666665544 467888999996 5 899999999999999999766655554 88999999999999999
Q ss_pred EEEcCCeEEEEEcCCCCc
Q 008050 555 TVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~~~ 572 (579)
.|+.|+.|+||.+...+.
T Consensus 464 vgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EecCCCeEEEEEECCCCc
Confidence 999999999999976554
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=9.2e-22 Score=203.27 Aligned_cols=295 Identities=20% Similarity=0.370 Sum_probs=236.2
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCe---------------------eEEE------
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGN---LLATSSLSGVVKIWSMPRLQ---------------------KFSA------ 323 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~---~latgs~dg~I~iwd~~~~~---------------------~~~~------ 323 (579)
.+|.....+.||..-|.+++|...+. +|++++.|..|+||.+.-+. ....
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 36778888999999999999987654 88999999999999863111 1111
Q ss_pred ----EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--------eeEEEecccCCeEEEEEecCCCEEEEEeCCC
Q 008050 324 ----LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS--------LLNTFQGHLDRLARMAFHPSGKYLGTTSFDK 391 (579)
Q Consensus 324 ----l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~--------~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg 391 (579)
+.||.+.|+++.|+|.+..|++++.|.++.+|..+.+ .+....+........-|+++++.+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 2389999999999999999999999999999995543 1222334455678899999999999999999
Q ss_pred eEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----eEEEEEecCCCCeEEEEEcCC
Q 008050 392 TWRLWDVDTG---VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPN 464 (579)
Q Consensus 392 ~I~lwd~~~~---~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~I~si~~sp~ 464 (579)
.+++|-.... .......||.+.|.+++|+|.|.+|++.+.|.+-++|---.. ..+..-+.|...++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983322 233455799999999999999999999999999999865411 122333568888999999986
Q ss_pred CCEEEEEeCCCcEEEEECCC-------------------------------------------Cc---------------
Q 008050 465 GYHLATGGEDNTCRIWDLRK-------------------------------------------RK--------------- 486 (579)
Q Consensus 465 g~~l~tgs~Dg~I~iwDl~~-------------------------------------------~~--------------- 486 (579)
...+++|.....+++|+... |.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 67788888888899997521 00
Q ss_pred ------------------eeEEEeCCCCCeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeEEEEecCCCCcEEE
Q 008050 487 ------------------SLYVIPAHSNLISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKLVKSLSGHEAKVTS 543 (579)
Q Consensus 487 ------------------~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~ 543 (579)
.++.+.+|...|++++.+|+ ++++++++.. ..|++|+..++..+..+.+|+-.|+.
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR 577 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence 01223467788999999996 8899988754 45999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
++|||||++|++.|.|+++.+|....
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeec
Confidence 99999999999999999999999854
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4e-21 Score=198.37 Aligned_cols=243 Identities=21% Similarity=0.351 Sum_probs=209.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe--eEEEecc-cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGSL--LNTFQGH-LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE 403 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~h-~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~ 403 (579)
....|.+++|+.+.+.||.+-.+|.|-||++.... ...+.++ ...|.+++|. .+..|++.+.+|.|.-||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 45789999999999999999999999999976543 3344444 4679999999 555789999999999999999999
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 404 LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 404 ~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
...+....+.|++++.+|.+..++.|+.||.+..++...++.... +....+.|.+++|++++..|++|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 999999999999999999999999999999888888877765433 444567899999999999999999999999999
Q ss_pred CCCCceeEEEeC--------CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEE
Q 008050 482 LRKRKSLYVIPA--------HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSI 553 (579)
Q Consensus 482 l~~~~~~~~~~~--------~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L 553 (579)
..++..++.... ....|.++.|-. ...|++|...|+|.+||...+.++..+..|.+.|.+++..+++.++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 999988773321 223477888875 4579999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEEcCCCCc
Q 008050 554 ATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 554 ~s~s~Dg~I~iW~~~~~~~ 572 (579)
+++|.|+.|.-|....++.
T Consensus 261 fsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEccCCCceEEEEecCCcc
Confidence 9999999999998877654
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-23 Score=226.61 Aligned_cols=281 Identities=19% Similarity=0.331 Sum_probs=225.7
Q ss_pred eEEEEcCCCC-EEEEEe----------cCCeEEEEeCCC--Ce----eEEEEeCCCCCeEEEEEccCCCE----EEEEeC
Q 008050 290 SGCSYSHDGN-LLATSS----------LSGVVKIWSMPR--LQ----KFSALKGHTERATDVTFSPVSNH----VATSSA 348 (579)
Q Consensus 290 ~~~~~spdg~-~latgs----------~dg~I~iwd~~~--~~----~~~~l~~h~~~V~~l~~sp~~~~----l~s~s~ 348 (579)
..++|+|.+. ++++|. .+.++.||.+.- .. .+..+. .....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3468999886 666553 345566665532 21 222222 3457889999997765 888899
Q ss_pred CCcEEEEeCCC-------CeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCeEEEE
Q 008050 349 DRTARLWNTDG-------SLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIA 418 (579)
Q Consensus 349 dg~I~iwd~~~-------~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V~~l~ 418 (579)
||.|.+||... ..+.++..|.+.|..+.|++... .|++|+.||.|.|||+++-+.-.... .....|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999432 34667788999999999999665 99999999999999998754443331 2456799999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC--CeEEEEEcCCC-CEEEEEeCCC---cEEEEECCC-CceeEE
Q 008050 419 FHPD-GSLAASCGLDALARVWDLRTGRSILALEGHVK--PVLGISFSPNG-YHLATGGEDN---TCRIWDLRK-RKSLYV 490 (579)
Q Consensus 419 ~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~I~si~~sp~g-~~l~tgs~Dg---~I~iwDl~~-~~~~~~ 490 (579)
|+.. ...|++++.+|.+.|||+|..+.+..+..+.+ .+..+.|+|++ ..|++++.|. .|.+||+|. ..++++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9984 45888999999999999999998888876654 47889999965 5677777554 699999986 456778
Q ss_pred EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC-EEEEEEcCCeEEEEEcCC
Q 008050 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ-SIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 491 ~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~iW~~~~ 569 (579)
+.+|...|.++.|++.+..+|++++.|+.|.+|+.++++.+..+....+.+..+.|+|... .|++++.||.|.||.+..
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 8899999999999998779999999999999999999999999998889999999999766 788889999999999976
Q ss_pred CC
Q 008050 570 KG 571 (579)
Q Consensus 570 ~~ 571 (579)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 55
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.6e-22 Score=199.78 Aligned_cols=267 Identities=14% Similarity=0.186 Sum_probs=214.7
Q ss_pred EEecCCeEEEEeCCCCeeEEEEeCCC--CCeEEEEEccCCCEEEE--EeCCCcEEEEeCCCC---eeEEEecccCCeEEE
Q 008050 303 TSSLSGVVKIWSMPRLQKFSALKGHT--ERATDVTFSPVSNHVAT--SSADRTARLWNTDGS---LLNTFQGHLDRLARM 375 (579)
Q Consensus 303 tgs~dg~I~iwd~~~~~~~~~l~~h~--~~V~~l~~sp~~~~l~s--~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l 375 (579)
+++....++|||+........+..|+ ..+.+++|+..+. |++ .+.|..+++|..+++ ....-......-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 34445679999998766655554433 3489999987654 444 456789999997765 111112222234556
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC-
Q 008050 376 AFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK- 454 (579)
Q Consensus 376 ~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~- 454 (579)
.......|+++|+..+.|+|||++...+.....+|...|+++.++....+|++++..|.|.|..+.++.....|....+
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence 5555668999999999999999998878888899999999999999999999999999999999999988888875544
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEE-eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE
Q 008050 455 PVLGISFSPNGY-HLATGGEDNTCRIWDLRKRKSLYVI-PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK 532 (579)
Q Consensus 455 ~I~si~~sp~g~-~l~tgs~Dg~I~iwDl~~~~~~~~~-~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~ 532 (579)
.|.-+.|++..+ +|.+++.+|.|.+||+....+++.+ ..|..+...|+|+|.+..+|++.+.|..|++||....+...
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 455889999654 5667889999999999887776655 56999999999999999999999999999999999877776
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 533 SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 533 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.+. ...+.+.++|+++|.+|+.|+..|.|..||++..+
T Consensus 246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 665 45679999999999999999999999999998654
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=6.4e-20 Score=191.28 Aligned_cols=289 Identities=38% Similarity=0.666 Sum_probs=242.3
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-eEEEEeCCCC-CeEEEEE-ccCCC-EEEEEeC-CCcEEEE
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-KFSALKGHTE-RATDVTF-SPVSN-HVATSSA-DRTARLW 355 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-~~~~l~~h~~-~V~~l~~-sp~~~-~l~s~s~-dg~I~iw 355 (579)
...+|...+.++.|.+.+..++.++.|+.+.+|+..... ....+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456789999999999999999999999999999998887 6777776443 7777777 77777 5555445 8999999
Q ss_pred eCCC--CeeEEEecccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEeC
Q 008050 356 NTDG--SLLNTFQGHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-LAASCGL 431 (579)
Q Consensus 356 d~~~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~~ 431 (579)
+... .....+..|...|..++|++++.++++++. |+.+++|++..+..+..+.+|...|.+++|++++. ++++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9875 788889999999999999999998888886 99999999999888888888999999999999998 5555599
Q ss_pred CCeEEEEeCCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeCCCCCeEEEEEeeCCCe
Q 008050 432 DALARVWDLRTGRSIL-ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS-LYVIPAHSNLISQVKFEPQEGY 509 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~-~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~-~~~~~~~~~~V~~v~~sp~~~~ 509 (579)
|+.|++||...+..+. .+.+|.... ...|++++.++++++.|+.+++||++.... +..+..|...+.++.|.|+ +.
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC-CC
Confidence 9999999999888887 688888775 448999998899999999999999987665 5555678889999999995 55
Q ss_pred EEEEEECCCEEEEEECCCCeEEEEec--CCCCcEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCC
Q 008050 510 FLVTGSYDMTVKVWSGRDFKLVKSLS--GHEAKVTSLDIHPDEQSIATV-SHDRWIKLWSTRNKG 571 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~iW~~~~~~ 571 (579)
.+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 56668888999999998887776665 788889999994332566665 688999999998765
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=7.7e-21 Score=200.11 Aligned_cols=288 Identities=20% Similarity=0.337 Sum_probs=235.5
Q ss_pred eeEEEEcCC--CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEE
Q 008050 289 LSGCSYSHD--GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTF 365 (579)
Q Consensus 289 I~~~~~spd--g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~ 365 (579)
|+++ ++|. -+.++.|+.+|.++|||+.+++.+++++++...|+++.=+|-=+.++.|..+|+|.++++. ++.+..+
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6665 4554 3678999999999999999999999999999999999999999999999999999999965 5667777
Q ss_pred ecccCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 366 QGHLDRLARMAFHPSGKY-LGTTSFDKTWRLWDVDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~-l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
+...+.|+.++|..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.+....+++++.|+.+++|=..++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 766799999999999984 5666667999999999888776654 78899999999999999999999999888855543
Q ss_pred ----eEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECC-----------------------------------
Q 008050 444 ----RSILALEGHVKPVLGISFS-PNGYHLATGGEDNTCRIWDLR----------------------------------- 483 (579)
Q Consensus 444 ----~~~~~~~~~~~~I~si~~s-p~g~~l~tgs~Dg~I~iwDl~----------------------------------- 483 (579)
+.+..-.+|..+..+|.|. .+|.++.+++.|++.+.|++.
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 3455556888888888887 577888888888776666542
Q ss_pred ------------------------------CCce-eEEEeC-----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 484 ------------------------------KRKS-LYVIPA-----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 484 ------------------------------~~~~-~~~~~~-----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
+... -+.+.. ....+++++.++ .|++.+.|+..|.|-+|++.+
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc
Confidence 1111 011110 124577888887 589999999999999999999
Q ss_pred CeEEEEe---cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 528 FKLVKSL---SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 528 ~~~~~~l---~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
|-...++ ..|.++|++++...-++.+++++.+|.+++|+++++.....+++
T Consensus 480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 9988888 48999999999999999999999999999999998876665544
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=184.85 Aligned_cols=271 Identities=25% Similarity=0.446 Sum_probs=212.5
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCC------------eeEEEEe-CCCCCeEEEEEc-------cCCCEEEEEe
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRL------------QKFSALK-GHTERATDVTFS-------PVSNHVATSS 347 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~------------~~~~~l~-~h~~~V~~l~~s-------p~~~~l~s~s 347 (579)
-..+|.|||||..|++-+.|..+.+|++... +....++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4557899999999999999999999998521 1111122 234568888885 5678899999
Q ss_pred CCCcEEEEe-CCCCeeEEEec--ccCC---eEEEEEecCCCEEEEEeCCCeEEEEEC-CCCcEEEE-------EecCCCC
Q 008050 348 ADRTARLWN-TDGSLLNTFQG--HLDR---LARMAFHPSGKYLGTTSFDKTWRLWDV-DTGVELLL-------QEGHSRS 413 (579)
Q Consensus 348 ~dg~I~iwd-~~~~~~~~~~~--h~~~---I~~l~~sp~~~~l~s~s~dg~I~lwd~-~~~~~~~~-------~~~~~~~ 413 (579)
.+.-|++|| .+|+....+.. |... ..+++|+|||.+|++| ....|++||+ +.|..... ..+..+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999 66665555543 4333 3589999999998765 5789999999 44432111 1244677
Q ss_pred eEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceeEE
Q 008050 414 VYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRK-RKSLYV 490 (579)
Q Consensus 414 V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~-~~~~~~ 490 (579)
+.|++|+|- ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|. .|..|.+||+|. +.+++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 999999994 45999999999999999889999999999999999999999999999998 577899999996 456667
Q ss_pred EeCCCC-CeEEEEE--eeCCCeEEEEEECCCEEEEEECCC-CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 491 IPAHSN-LISQVKF--EPQEGYFLVTGSYDMTVKVWSGRD-FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 491 ~~~~~~-~V~~v~~--sp~~~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
+..|.. .-..|.| .|. +.+|++|+.||.|++||+++ +..+..+..|+..++.++++|--.++++++...
T Consensus 290 L~rhv~~TNQRI~FDld~~-~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPK-GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhhhccCccceEEEecCCC-CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 766654 3333444 564 88999999999999999998 677888888999999999999988888877543
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1e-21 Score=201.35 Aligned_cols=273 Identities=17% Similarity=0.278 Sum_probs=219.0
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 367 (579)
.|..++|-|||..|+.+. +..+.+||.+.|..+.++++|.+.|.|++|+.+|+.+++|+.|+.|.+|+..-+-+.. ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-YS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-YS 91 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-ec
Confidence 788999999999888775 5689999999999999999999999999999999999999999999999943332222 35
Q ss_pred ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 368 h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
|.+.|.|+.|+|-.+.|++++-+ ..-+|.......... .....+.+++|..||++++.|-.+|+|.|-+- +++...
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~ 167 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV 167 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence 89999999999999999988753 356777654332221 23456889999999999999999999999864 444433
Q ss_pred EEe---cCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 448 ALE---GHVKPVLGISFSPNG-----YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 448 ~~~---~~~~~I~si~~sp~g-----~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
.+. +.+.+|.+++|+|+. ..+++.....++.+|.+ +|+.+..-..-.-.-.|+.+.++ |.|+..|+.|+.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~N-GEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTN-GEYILLGGSDKQ 245 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccC-CcEEEEccCCCc
Confidence 333 477899999999953 46777777777877776 35554433332334567888885 888889999999
Q ss_pred EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
+.+|. +.|-.+.++......|+++...|++++++.|+.||+|-.|++-.
T Consensus 246 L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 246 LSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99997 67888888887888999999999999999999999999998754
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=9.6e-22 Score=190.30 Aligned_cols=239 Identities=24% Similarity=0.407 Sum_probs=191.0
Q ss_pred CCCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCC-----------------CCeeEEEecccCCeEEEEEecCCC-EEE
Q 008050 326 GHTERATDVTFSPVS--NHVATSSADRTARLWNTD-----------------GSLLNTFQGHLDRLARMAFHPSGK-YLG 385 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~--~~l~s~s~dg~I~iwd~~-----------------~~~~~~~~~h~~~I~~l~~sp~~~-~l~ 385 (579)
.|.+.++.+.-.+-+ .+.++=+..|.|+||++. .+.+.++.+|...=..++|+|-.. .|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577777777777654 345555678999999953 246778899999999999999332 588
Q ss_pred EEeCCCeEEEEECCCCcEEE---EEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEE
Q 008050 386 TTSFDKTWRLWDVDTGVELL---LQEGHSRSVYGIAFHPD-GSLAASCGLDALARVWDLRTGR--SILALEGHVKPVLGI 459 (579)
Q Consensus 386 s~s~dg~I~lwd~~~~~~~~---~~~~~~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si 459 (579)
+|..-+.|++|...++.-.. -+.+|...|-.++|+|. ...|++|+.||+|+|||+|++. .....+.|.+.|+.|
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 88888999999998875443 34579999999999995 4589999999999999999983 333448899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC---CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC--------
Q 008050 460 SFSPNGYHLATGGEDNTCRIWDLRK---RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-------- 528 (579)
Q Consensus 460 ~~sp~g~~l~tgs~Dg~I~iwDl~~---~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-------- 528 (579)
.|+.+-.+|++|+.||+++|||+|. ++++..|+.|..+|+++.|+|.....|++++.|..|.+||+..-
T Consensus 309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~ 388 (440)
T KOG0302|consen 309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ 388 (440)
T ss_pred EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc
Confidence 9999888999999999999999986 56888999999999999999998889999999999999997521
Q ss_pred -----------eEEEEecCCCCcEEEEEEcCC-CCEEEEEEcCCeEEEEE
Q 008050 529 -----------KLVKSLSGHEAKVTSLDIHPD-EQSIATVSHDRWIKLWS 566 (579)
Q Consensus 529 -----------~~~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~iW~ 566 (579)
+++....+ ...|-.+.|++. -.+|++.+.|| +.||.
T Consensus 389 ~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 389 EAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 12222111 335778889884 34688888898 66665
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=7.3e-22 Score=195.43 Aligned_cols=261 Identities=21% Similarity=0.291 Sum_probs=208.4
Q ss_pred EeCCCCeeEEEEeCCCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCC-----CeeEEEecccCCeEEEEEecCC-CEE
Q 008050 313 WSMPRLQKFSALKGHTERATDVTFSPVS--NHVATSSADRTARLWNTDG-----SLLNTFQGHLDRLARMAFHPSG-KYL 384 (579)
Q Consensus 313 wd~~~~~~~~~l~~h~~~V~~l~~sp~~--~~l~s~s~dg~I~iwd~~~-----~~~~~~~~h~~~I~~l~~sp~~-~~l 384 (579)
+|+.+.......+.+.+.|++++|+|.. +++++|...|.|-+||+.+ ..+..+..|..+|.++.|+|.+ ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4455555666677799999999999965 4788889999999999842 3566788899999999999965 589
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEecCCCCeEEEEE
Q 008050 385 GTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS-ILALEGHVKPVLGISF 461 (579)
Q Consensus 385 ~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~I~si~~ 461 (579)
++.+.||+|++-|++++..-.++. .....+.++.|+.+...++.++.=|.+.+||++++.. ...+..|...|.+|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 999999999999998864433332 2455678889998888888888888999999998765 6667788889999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCCc----eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC----CCeEEE
Q 008050 462 SP-NGYHLATGGEDNTCRIWDLRKRK----SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR----DFKLVK 532 (579)
Q Consensus 462 sp-~g~~l~tgs~Dg~I~iwDl~~~~----~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~----~~~~~~ 532 (579)
+| +..+|++++.|++.+|||+|... ++.....|...|.+..|+|.++. |++.+.|+.|+|||.. ...+..
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccc
Confidence 99 56789999999999999998632 23344578999999999999777 8888999999999973 233333
Q ss_pred EecCCCC------cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 533 SLSGHEA------KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 533 ~l~~h~~------~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
.+. |.. ......|.|+..+|++|-.-..|-|+|-+.++.+..
T Consensus 410 ~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 410 TIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred eee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 332 221 245567999999999999999999999988775544
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=6.6e-22 Score=185.70 Aligned_cols=206 Identities=21% Similarity=0.390 Sum_probs=174.8
Q ss_pred ecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcE----------EE-----EEecCCCCeEEEEEcC-CCCEEEE
Q 008050 366 QGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVE----------LL-----LQEGHSRSVYGIAFHP-DGSLAAS 428 (579)
Q Consensus 366 ~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~----------~~-----~~~~~~~~V~~l~~sp-dg~~l~s 428 (579)
..|.+.|+.+.+.+ .|+|+++|+.||.|.+||+++... +. ...+|.-.|.++.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45778889999877 678999999999999999976431 11 1236778899999999 6668999
Q ss_pred EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSP---NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp---~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
++.|.++++||..+.+....|+ ..+.|++-+|+| ...++++|..|-.|++.|+.+|..-+++.+|...|..+.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999999888887 445688888988 345788888999999999999999999999999999999999
Q ss_pred CCCeEEEEEECCCEEEEEECCCC-eEEEEe--------------cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDF-KLVKSL--------------SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~-~~~~~l--------------~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
.+...|++|+.||.|++||++.- .++..+ ..|.+.|.+++|+.+|.++++++.|..+++|+..++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 98899999999999999998754 233322 257788999999999999999999999999999887
Q ss_pred Cc
Q 008050 571 GD 572 (579)
Q Consensus 571 ~~ 572 (579)
..
T Consensus 279 ~n 280 (397)
T KOG4283|consen 279 RN 280 (397)
T ss_pred cc
Confidence 54
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=192.58 Aligned_cols=241 Identities=21% Similarity=0.305 Sum_probs=203.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCc
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~ 402 (579)
..+.|+++.|+|....|++++.||+++||.++|+ .+..+.-...+|.+.+|+|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3568999999999999999999999999998875 4555666778999999999999 89999999999999999887
Q ss_pred EEEEEe--cCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008050 403 ELLLQE--GHS-RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479 (579)
Q Consensus 403 ~~~~~~--~~~-~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~i 479 (579)
...... ++. ..+..+..++++++|+..|..|.|.+....+++.+.+++ -.+.|..++|+.+|+.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 654432 332 457788899999999999999999999999999999888 4556999999999999999999999999
Q ss_pred EECCCCceeEEEeCCCC-CeEEEEEeeCCCeEEEEEECCCEEEEEECCC------CeEEEEecCCCCcEEEEEEcCCCCE
Q 008050 480 WDLRKRKSLYVIPAHSN-LISQVKFEPQEGYFLVTGSYDMTVKVWSGRD------FKLVKSLSGHEAKVTSLDIHPDEQS 552 (579)
Q Consensus 480 wDl~~~~~~~~~~~~~~-~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~------~~~~~~l~~h~~~V~~l~~s~dg~~ 552 (579)
||++...+++.+....+ .-++++.+.+ +.||++|+..|.|.|||..+ .+++..+......|+++.|++|++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~n-g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLN-GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCC-CceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999998875322 2355666675 78999999999999999654 4677788778888999999999999
Q ss_pred EEEEE--cCCeEEEEEcCC
Q 008050 553 IATVS--HDRWIKLWSTRN 569 (579)
Q Consensus 553 L~s~s--~Dg~I~iW~~~~ 569 (579)
|+.+| .+..+++-.+.+
T Consensus 450 LAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPS 468 (514)
T ss_pred hhhhhhccccceEEEeccc
Confidence 88777 456677766654
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=6.1e-21 Score=186.54 Aligned_cols=288 Identities=22% Similarity=0.343 Sum_probs=221.0
Q ss_pred CCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCC---------eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 285 DDRPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRL---------QKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 285 h~~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
...+|.++.|.+++. .|++|+.|..|+||.+... +....+..|...|+++.|+|+|++|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 567899999999876 9999999999999987532 234456789999999999999999999999999999
Q ss_pred EeCC--------C---------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEE
Q 008050 355 WNTD--------G---------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGI 417 (579)
Q Consensus 355 wd~~--------~---------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l 417 (579)
|... + .....+.+|...|..++|++++.++++++.|.++++||+..|.....+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9854 2 1234567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--------c-----------CC----CCeEEEEEcCCCCEEEEEeC-
Q 008050 418 AFHPDGSLAASCGLDALARVWDLRTGRSILALE--------G-----------HV----KPVLGISFSPNGYHLATGGE- 473 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~--------~-----------~~----~~I~si~~sp~g~~l~tgs~- 473 (579)
+|.|-++++++-+.|...+++++...+.+.... . |. .-...++|+|+|.+|++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999988877777765443322211 0 11 11345789999999987642
Q ss_pred ---CC-----cEEEEECCC-CceeEEEeCCCCCeEEEEEeeC-----------------CCeEEEEEECCCEEEEEECCC
Q 008050 474 ---DN-----TCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQ-----------------EGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 474 ---Dg-----~I~iwDl~~-~~~~~~~~~~~~~V~~v~~sp~-----------------~~~~l~sgs~dg~I~iwd~~~ 527 (579)
++ ..++|+-.. .++...+.........+.|+|- .+..++.++ .+.|++||..+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 22 334554322 2344444444455555555541 122344444 56799999998
Q ss_pred CeEEEEec-CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 528 FKLVKSLS-GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 528 ~~~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
..++.... -|-..|+.++|++||.+|+..|.||...+-.+...++.
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 88777664 48889999999999999999999999888877765543
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=192.83 Aligned_cols=234 Identities=20% Similarity=0.335 Sum_probs=185.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCe---e------------------EEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQ---K------------------FSALKGHTERATDVTFSPV-SNHVATSSADRTARLW 355 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~---~------------------~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iw 355 (579)
|+|+|.|+.|..|.|||+.-.. . -..-.+|+..|.++.|+.. .+.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6899999999999999975211 0 0112368999999999875 4679999999999999
Q ss_pred eCC-CCeeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEeCC
Q 008050 356 NTD-GSLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG-SLAASCGLD 432 (579)
Q Consensus 356 d~~-~~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg-~~l~sg~~d 432 (579)
|++ +++...+..|.+.|.++.|++. ..+|++|+.|++|.++|.+........-...+.|-.+.|++.. ..+++++.|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 964 5777788889999999999995 4689999999999999998532222222345678899999954 477788899
Q ss_pred CeEEEEeCCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce--eEEEeCCCCCeEEEEEeeCCC
Q 008050 433 ALARVWDLRTG-RSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKS--LYVIPAHSNLISQVKFEPQEG 508 (579)
Q Consensus 433 g~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~--~~~~~~~~~~V~~v~~sp~~~ 508 (579)
|.|+-+|+|+. +++.+++.|..+|.+|+++. ...++++++.|+.|++|++..... +..-...-+...|.++.|+-.
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc
Confidence 99999999985 89999999999999999998 456899999999999999865333 222222234477788888878
Q ss_pred eEEEEEECCCEEEEEECCCCeEE
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
.+++.|+..+.++|||+.+...+
T Consensus 432 ~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 432 FTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eEEEecCccceEEEeecccChhH
Confidence 88999999999999998876544
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-21 Score=199.70 Aligned_cols=116 Identities=26% Similarity=0.527 Sum_probs=105.2
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 456 VLGISFSP-NGYHLATGGEDNTCRIWDLRKR-------KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 456 I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~-------~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
|+.+.|.| |...|++++.||.|++|.+..+ .+-..+..|...|+++.|+|-...+|+++++|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 66777888 6678999999999999998653 455678889999999999998888999999999999999999
Q ss_pred CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
++....+.+|.+.|.+++|||+|+.+++.+.||+|++|+..++.
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999987654
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=177.60 Aligned_cols=250 Identities=21% Similarity=0.347 Sum_probs=190.3
Q ss_pred EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE-----EEecccCCeEEEEEecCCCEEEEE-eCCCeEEEE
Q 008050 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLN-----TFQGHLDRLARMAFHPSGKYLGTT-SFDKTWRLW 396 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~-----~~~~h~~~I~~l~~sp~~~~l~s~-s~dg~I~lw 396 (579)
.+++|.+.|++++|+.+|++|++++.|+.|++|++..-..+ ...-..+..+.+.|.||-+-+++. -...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 46899999999999999999999999999999996542111 111222356889999998865554 455689999
Q ss_pred ECCCCc---EE---------EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCC
Q 008050 397 DVDTGV---EL---------LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPN 464 (579)
Q Consensus 397 d~~~~~---~~---------~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~ 464 (579)
-+...+ .. .....|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..+.||+
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence 764321 11 1122455566677777788899999999999999998 9999988887777888999999
Q ss_pred CCEEEEEeCCCcEEEEECC---C-----CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC-------Ce
Q 008050 465 GYHLATGGEDNTCRIWDLR---K-----RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD-------FK 529 (579)
Q Consensus 465 g~~l~tgs~Dg~I~iwDl~---~-----~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~-------~~ 529 (579)
|++|++++..--|++|..- . -..+..+.+|...|..++|+++ ...+++.+.||+++|||.+- .+
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~-S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS-STRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC-cceeEEEecCCcEEEeeccceEecCCCch
Confidence 9999999988889999853 2 2356788899999999999996 77899999999999999642 12
Q ss_pred EEEEe----cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 530 LVKSL----SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 530 ~~~~l----~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
.++.. ....+.-..+.++|+|+.|+.+. ...|++|..+.++....
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE 367 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh
Confidence 22222 12233445899999999887664 56799999988765443
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.1e-22 Score=215.47 Aligned_cols=244 Identities=19% Similarity=0.345 Sum_probs=201.4
Q ss_pred CCCeeEEEEcCCCCE----EEEEecCCeEEEEeCCCC------eeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEE
Q 008050 286 DRPLSGCSYSHDGNL----LATSSLSGVVKIWSMPRL------QKFSALKGHTERATDVTFSPVSN-HVATSSADRTARL 354 (579)
Q Consensus 286 ~~~I~~~~~spdg~~----latgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~i 354 (579)
....+.++|.+.|.. |+.|..||.|.+||.... ..+.+...|++.|..+.|++.+. +|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345778899988765 889999999999997652 34556678999999999999765 9999999999999
Q ss_pred EeCCCC-eeEE--EecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCC--CeEEEEEcCCCC-EEE
Q 008050 355 WNTDGS-LLNT--FQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSR--SVYGIAFHPDGS-LAA 427 (579)
Q Consensus 355 wd~~~~-~~~~--~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~--~V~~l~~spdg~-~l~ 427 (579)
||++.- .-.. -....+.|.+++|+..- +.|++++.+|.+.|||++..+.+..+..+.+ .+..+.|||++. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 997651 1111 12345789999998754 4778888899999999999887776655543 477899999764 555
Q ss_pred EEeCCC---eEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEE
Q 008050 428 SCGLDA---LARVWDLRTG-RSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK 502 (579)
Q Consensus 428 sg~~dg---~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~ 502 (579)
+++.|. .|.+||+|.- ..+..+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+....+++..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 665543 7999999964 5677889999999999999955 8999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCe
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFK 529 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~ 529 (579)
|+|.+...|++.+.||.|.||.+.+..
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999987554
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.6e-18 Score=180.60 Aligned_cols=289 Identities=41% Similarity=0.707 Sum_probs=237.8
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEE
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSL-SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN-HVATSSADRTARL 354 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~i 354 (579)
.......+|...|.+++|++++.++++++. ++.+++|+...+..+..+.+|...|.++.|++++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 445566789999999999999999998885 99999999999889999999999999999999998 5555599999999
Q ss_pred EeCC-CCeeE-EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 355 WNTD-GSLLN-TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE-LLLQEGHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 355 wd~~-~~~~~-~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
|+.. +.... .+.+|.... ...|++++.++++++.|+.+++|++..... .....+|...+.++.|+|++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9865 44555 577888775 448999998999999999999999987664 4444678899999999998888888999
Q ss_pred CCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCC
Q 008050 432 DALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEG 508 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~ 508 (579)
|+.+.+||+.+........ .|...+..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+.+ .
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~- 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D- 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-
Confidence 9999999999888777665 787789999994333566666 6889999999988773333333322 78888988 6
Q ss_pred eEEEE-EECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 509 YFLVT-GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 509 ~~l~s-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
..+.. +..++.+.+|+............+...+..+.+++++..+++++.++.+++|+...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 54554 78899999999998888877765547799999999999999999999999999876
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=4.8e-20 Score=175.78 Aligned_cols=286 Identities=21% Similarity=0.346 Sum_probs=217.8
Q ss_pred eecccCCCCCeeEEEEcC-----CCCEEEEEecCCeEEEEeCCCCeeEEEEe-----CCCCCeEEEEEccC----CCEEE
Q 008050 279 DCTESGDDRPLSGCSYSH-----DGNLLATSSLSGVVKIWSMPRLQKFSALK-----GHTERATDVTFSPV----SNHVA 344 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~sp-----dg~~latgs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~sp~----~~~l~ 344 (579)
...+.+|+.+|..++|++ ....+++.+ ...+.+|......-+..++ .|......++|+-+ +.+++
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 345568899999999984 234556555 5678888876544333332 37778888999764 45789
Q ss_pred EEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCeEEEEE
Q 008050 345 TSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQ---EGHSRSVYGIAF 419 (579)
Q Consensus 345 s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~---~~~~~~V~~l~~ 419 (579)
.|+.-|.|+|.| ..++....+.+|...|+.+.++|.. +++++++.|.+|++||+++..++..+ .+|.+.|.++.|
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 999999999999 5567788899999999999999976 68999999999999999999999887 479999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeE------EE----------------------EEecCCCCeEEEEEcCCCCEEEEE
Q 008050 420 HPDGSLAASCGLDALARVWDLRTGRS------IL----------------------ALEGHVKPVLGISFSPNGYHLATG 471 (579)
Q Consensus 420 spdg~~l~sg~~dg~I~iwd~~~~~~------~~----------------------~~~~~~~~I~si~~sp~g~~l~tg 471 (579)
+.+|.+|+++|.|..|++|++...+. .. +-..|...|.|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 99999999999999999999973211 00 112345555566664 5689999
Q ss_pred eCCCcEEEEECCC-Cc-------------eeEEEeCCCCCeEEEEE--eeCCCeEEEEEECCCEEEEEECCCCeEE--EE
Q 008050 472 GEDNTCRIWDLRK-RK-------------SLYVIPAHSNLISQVKF--EPQEGYFLVTGSYDMTVKVWSGRDFKLV--KS 533 (579)
Q Consensus 472 s~Dg~I~iwDl~~-~~-------------~~~~~~~~~~~V~~v~~--sp~~~~~l~sgs~dg~I~iwd~~~~~~~--~~ 533 (579)
+.++.|..|-..+ .+ .+..+......|.-+.| ++- +.+|+.|...|.|++||+++.... .+
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep~~~tt 346 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEPPKCTT 346 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCCccCce
Confidence 9999999997621 11 22334444455555554 443 678999999999999999876642 22
Q ss_pred ec--CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 534 LS--GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 534 l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+. .....|...+|+.||..|+..+.|++|.-||.-
T Consensus 347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 22 224568999999999999999999999999864
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-20 Score=188.46 Aligned_cols=260 Identities=20% Similarity=0.252 Sum_probs=207.8
Q ss_pred CeeEEEEcCCCCEEEEE--ecCCeEEEEeCCCC--eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-e
Q 008050 288 PLSGCSYSHDGNLLATS--SLSGVVKIWSMPRL--QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL-L 362 (579)
Q Consensus 288 ~I~~~~~spdg~~latg--s~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~-~ 362 (579)
.+.+++|+.... |+++ +.|..+++|.-... +....-+.....-.|++......++++|+..+.|+|||+..+. .
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 488999998765 4444 45778888874322 1211111122234444444455899999999999999987654 4
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH-SRSVYGIAFHPDGS-LAASCGLDALARVWDL 440 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~ 440 (579)
..+++|...|+++.++-...||++++..|.|.+..+.++.....+... ...|.-+.|++..+ +|.+++.+|.|.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 567899999999999999999999999999999999998877766544 34566899999766 6778899999999999
Q ss_pred CCCeEEEEE-ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC
Q 008050 441 RTGRSILAL-EGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM 518 (579)
Q Consensus 441 ~~~~~~~~~-~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg 518 (579)
....+++.+ +.|..+...|||+| +..+|++.+.|..|.+||++..+....+.. ..+.+.++|.++ |.+|++|+..|
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~-G~~L~aG~s~G 272 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSEC-GTYLCAGNSKG 272 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCC-ceEEEeecCCc
Confidence 988777665 57899999999999 567888999999999999998777766654 467899999995 99999999999
Q ss_pred EEEEEECCCC-eEEEEecCCCCcEEEEEEcCCC
Q 008050 519 TVKVWSGRDF-KLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 519 ~I~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg 550 (579)
.|..||++.. .++..+..|...|++++|-+.-
T Consensus 273 ~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 273 ELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999864 5788899999999999998754
No 161
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.9e-20 Score=179.51 Aligned_cols=287 Identities=15% Similarity=0.225 Sum_probs=222.1
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC------CeeEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR------LQKFSALK-GHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~------~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
.-..+|.+.|+++.||.++++|++|+.|-.+.+|++.. .+.+.... .|...|.|++|...+.++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999863 24444333 356899999999999999999999999
Q ss_pred EEEeCCCCeeEEEecccC---CeEEEEEecCCCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCCeEEEEEcCC-CCE
Q 008050 353 RLWNTDGSLLNTFQGHLD---RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV---ELLLQEGHSRSVYGIAFHPD-GSL 425 (579)
Q Consensus 353 ~iwd~~~~~~~~~~~h~~---~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~~~V~~l~~spd-g~~ 425 (579)
.+.|++.+.......|.. .|..+..+|..+.|++.+.++.|.+||++... .........+..+++.|+|. -.+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999988776555555554 89999999999999999999999999997654 22333345567889999995 458
Q ss_pred EEEEeCCCeEEEEeCCCCe-EEEEE------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeCCC--
Q 008050 426 AASCGLDALARVWDLRTGR-SILAL------EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS-LYVIPAHS-- 495 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~-~~~~~------~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~-~~~~~~~~-- 495 (579)
|++.+..+-+.+||.+... .+... ......-.++.|+++|+.|++--....-.+||+-+.++ +..+....
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 8889999999999998643 22221 11122346788999999998877666677888876443 33333111
Q ss_pred ----CCeEEEEEeeCCCeEEEEEECCCEEEEEECCC----------C-------------eEEEEecCCCCcEEEEEEcC
Q 008050 496 ----NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD----------F-------------KLVKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 496 ----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~----------~-------------~~~~~l~~h~~~V~~l~~s~ 548 (579)
..+.+++|.. .+-+++|+.+-.|++|.+.. | +.+..+++|.+-+..+.|++
T Consensus 290 Y~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 290 YCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred ceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 2366777874 46699999999999997642 1 23456789999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcC
Q 008050 549 DEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 549 dg~~L~s~s~Dg~I~iW~~~ 568 (579)
...+|++.|....++||.-.
T Consensus 368 H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CcceEeccchhhheeccccc
Confidence 99999999999999999753
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=192.03 Aligned_cols=284 Identities=16% Similarity=0.287 Sum_probs=207.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEE--EeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCC
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA--LKGHTERATDVTFSPVS-NHVATSSADRTARLWNTD 358 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~ 358 (579)
...|...|..+.|-|....|++++.|.++++||+++.+.+.. +.+|.+.|.+++|.+.+ ..|++|+.||.|.|||..
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 346899999999999777899999999999999999888776 88999999999999965 568999999999999942
Q ss_pred CCe----------------------------eEEEecccCCeEE---EEEecCCCEEEEEeC-CCeEEEEECCCCcEEEE
Q 008050 359 GSL----------------------------LNTFQGHLDRLAR---MAFHPSGKYLGTTSF-DKTWRLWDVDTGVELLL 406 (579)
Q Consensus 359 ~~~----------------------------~~~~~~h~~~I~~---l~~sp~~~~l~s~s~-dg~I~lwd~~~~~~~~~ 406 (579)
-.. ......+...|.+ +.+..|...|++++. |+.|++||+++......
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 110 0111223344554 556678889999888 99999999987654332
Q ss_pred E--------ecC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCC--eEEEEEcCCCCEEEEE
Q 008050 407 Q--------EGH---SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR--SILALEGHVKP--VLGISFSPNGYHLATG 471 (579)
Q Consensus 407 ~--------~~~---~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~--I~si~~sp~g~~l~tg 471 (579)
. ..| .-.+.++.....|.+|++.+.|+.|++||+.+.. .+..+.++... -..-..+|++.+|++|
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~Sg 335 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSG 335 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEecc
Confidence 2 122 2357788888888988888889999999998643 34444443321 2223468899999999
Q ss_pred eCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe--------------EEEEecC
Q 008050 472 GEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK--------------LVKSLSG 536 (579)
Q Consensus 472 s~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~--------------~~~~l~~ 536 (579)
+.|...++|.+.+.. ....+.+|.-.|++++|.|..-.-+++++.|..+++|++.++- ....+++
T Consensus 336 Ssd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~ 415 (720)
T KOG0321|consen 336 SSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKG 415 (720)
T ss_pred CCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhc
Confidence 999999999998754 4556678999999999998766678888999999999986542 2234455
Q ss_pred CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 537 HEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 537 h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
|.-.+..+.++-.+.+..-. .+..++|..
T Consensus 416 ~~p~~~nv~ss~~~t~~~pR--~~~~r~~ss 444 (720)
T KOG0321|consen 416 HLPQVLNVNSSLRKTYKDPR--EGMNRISSS 444 (720)
T ss_pred cccccccccccccccccchh--hhccccccC
Confidence 65555555555433332222 344555544
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.3e-20 Score=174.49 Aligned_cols=243 Identities=16% Similarity=0.241 Sum_probs=184.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec
Q 008050 331 ATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG 409 (579)
Q Consensus 331 V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~ 409 (579)
..|+.|++.|.+|++|+.||.|.|||+.+ ..-..+.+|..+|++++|+++|+.|++++.|..|.+||+..|..+..+ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 78999999999999999999999999665 455678899999999999999999999999999999999999977666 4
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 410 HSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILALEGHVK----PVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 410 ~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
..++|+...|+|... .++++-.+..-.+.++..++....-....+ .-.+..|.+.|++|++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999999433 444333444444555544322211111111 122335888999999999999999999999
Q ss_pred CceeEEEeCCC-CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-------e--EEEEecC--CCCcEEEEEEcCCCCE
Q 008050 485 RKSLYVIPAHS-NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-------K--LVKSLSG--HEAKVTSLDIHPDEQS 552 (579)
Q Consensus 485 ~~~~~~~~~~~-~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-------~--~~~~l~~--h~~~V~~l~~s~dg~~ 552 (579)
.+++..+.... ..|.++.++.. +.+|+.-+.|..|+.|++..- + +.+++.. ....=.+++||.+|.|
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 99999887765 77888999884 889999999999999997631 1 1112211 1222357889999999
Q ss_pred EEEEE-cCCeEEEEEcCCCCcccc
Q 008050 553 IATVS-HDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 553 L~s~s-~Dg~I~iW~~~~~~~~~~ 575 (579)
++.++ .-..++||.-..|.++..
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred EEeccccceeEEEEecCCcceeee
Confidence 98776 346799999888776654
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=9.7e-19 Score=186.06 Aligned_cols=263 Identities=16% Similarity=0.180 Sum_probs=202.8
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCee-------EEEecccCCeEEEEEe
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTDGSLL-------NTFQGHLDRLARMAFH 378 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~~~~-------~~~~~h~~~I~~l~~s 378 (579)
++.+.||++.+.............|.|++|+|. .++++.|+.+|.|.+||+..... .....|...++.+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 357999999876444444446789999999995 56788888999999999654221 2335688899999997
Q ss_pred cCCCE--EEEEeCCCeEEEEECCCCcEEE------EEe------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC--
Q 008050 379 PSGKY--LGTTSFDKTWRLWDVDTGVELL------LQE------GHSRSVYGIAFHP-DGSLAASCGLDALARVWDLR-- 441 (579)
Q Consensus 379 p~~~~--l~s~s~dg~I~lwd~~~~~~~~------~~~------~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~-- 441 (579)
.+-.- |++++.||.|..|+++.-.... ... .....+++++|.+ +-+.+++|+..|.|.--+-.
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 75544 9999999999999886532210 111 2234688999998 55689999999998874322
Q ss_pred -CCe-----EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 442 -TGR-----SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR-KRKSLYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 442 -~~~-----~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~-~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
... ....+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++|+|....+|+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 222 233566789999999999977666665669999999988 7788888888888899999999988999999
Q ss_pred ECCCEEEEEECCC--CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 515 SYDMTVKVWSGRD--FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 515 s~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
..||.|.+||+.. ..++.+...+....+.+.|+++|+.|++|+..|++.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999864 345555555566678888999999999999999999999953
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.1e-20 Score=175.62 Aligned_cols=268 Identities=20% Similarity=0.294 Sum_probs=199.5
Q ss_pred CEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCC---CeeEEEeccc-CCe
Q 008050 299 NLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSP--VSNHVATSSADRTARLWNTDG---SLLNTFQGHL-DRL 372 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp--~~~~l~s~s~dg~I~iwd~~~---~~~~~~~~h~-~~I 372 (579)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||+.. .....+..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 6789999999999999999999999999999999999987 467899999999999999543 2333444444 456
Q ss_pred EEEEEecCCCEEEEEeC----CCeEEEEECCCCcE-EE-EEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe-
Q 008050 373 ARMAFHPSGKYLGTTSF----DKTWRLWDVDTGVE-LL-LQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGR- 444 (579)
Q Consensus 373 ~~l~~sp~~~~l~s~s~----dg~I~lwd~~~~~~-~~-~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~- 444 (579)
.+++..-.++.+++|+. +-.|.+||++..+. +. ....|...|+++.|+| +.++|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777767778887754 57899999998766 33 4568999999999999 56799999999999999997642
Q ss_pred --EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeCC-------------CCCeEEEEEeeCCC
Q 008050 445 --SILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKSLYVIPAH-------------SNLISQVKFEPQEG 508 (579)
Q Consensus 445 --~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-------------~~~V~~v~~sp~~~ 508 (579)
.+...-.|...|.++.|..++ +.|.+-+...+..+|++..+.....+... ...|.. .+|...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPGDK 278 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCCCc
Confidence 222233466779999999987 45888889999999999988755444321 011221 123233
Q ss_pred eEEEE-EECCCEEEEEECC---C---CeEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 509 YFLVT-GSYDMTVKVWSGR---D---FKLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 509 ~~l~s-gs~dg~I~iwd~~---~---~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+++. |+.-|...++-+. + .+.+..+.+ |..-|.++.|...+.+++|||.||.+.+|...
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 34444 4435555555332 2 334455655 66778899999889999999999999999953
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.8e-19 Score=169.01 Aligned_cols=269 Identities=22% Similarity=0.373 Sum_probs=204.6
Q ss_pred CEEEEEe----cCCeEEEEeCCCCee---EEEEeCCCCCeEEEEEccCCC-EEEEEeCC-------CcEEEEeCCCC---
Q 008050 299 NLLATSS----LSGVVKIWSMPRLQK---FSALKGHTERATDVTFSPVSN-HVATSSAD-------RTARLWNTDGS--- 360 (579)
Q Consensus 299 ~~latgs----~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~sp~~~-~l~s~s~d-------g~I~iwd~~~~--- 360 (579)
-.+++|+ .|+.|.+.++..... -..|..|.+.|..++-+|... .|+++..+ ..+.||.+...
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 3455554 367777777654332 234567889999999999665 45555432 35789985431
Q ss_pred -------eeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE-EEE-----ecCCCCeEEEEEcC--CCC
Q 008050 361 -------LLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL-LLQ-----EGHSRSVYGIAFHP--DGS 424 (579)
Q Consensus 361 -------~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~-~~~-----~~~~~~V~~l~~sp--dg~ 424 (579)
.+..+. .+-+.|.|+.|.|++..+++.. |..|.+|++..+..+ ... ..+....++-+|+| +|+
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 222232 4556899999999999888876 899999999887663 211 13455677889998 777
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-CceeEEEeCCCCCeEEE
Q 008050 425 LAASCGLDALARVWDLRTGRSILAL-EGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNLISQV 501 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~V~~v 501 (579)
.+++. .|+++..||+|+.++...+ ..|...|..+.|+|+- .+|++|+.||.|+|||.|+ ..++..+..|...|.++
T Consensus 186 qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 186 QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 77765 5899999999998877666 4677889999999975 6788999999999999987 45788999999999999
Q ss_pred EEeeCCCeEEEEEECCCEEEEEECCCC-----------------------------eEEEEecCCCCcEEEEEEcCCCCE
Q 008050 502 KFEPQEGYFLVTGSYDMTVKVWSGRDF-----------------------------KLVKSLSGHEAKVTSLDIHPDEQS 552 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~V~~l~~s~dg~~ 552 (579)
.|+|....+|++|+.|..|.+|....- ..+.++..|++.|.+++||.-..+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 999988999999999999999963211 124467789999999999986666
Q ss_pred -EEEEEcCCeEEEEEcCC
Q 008050 553 -IATVSHDRWIKLWSTRN 569 (579)
Q Consensus 553 -L~s~s~Dg~I~iW~~~~ 569 (579)
+++-+.||.+.|=++..
T Consensus 345 iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccCceEEeecCCh
Confidence 67789999999877654
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.9e-20 Score=172.38 Aligned_cols=281 Identities=21% Similarity=0.304 Sum_probs=205.7
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK-GHTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
+.+|...|+++.|..++. |.+|..-|.|++|++.+......+. .|...|+.+.-.|+ ..|.+-+.|+.+.+|++...
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 348999999999998766 8899999999999999988888888 57788999998887 67888999999999997764
Q ss_pred eeEEEecccCCeEEEEEec-----CCC----EEEEEeCCC-eEEEEECCCCcEEEEE----ecCCCCeEEEEEcC-CCC-
Q 008050 361 LLNTFQGHLDRLARMAFHP-----SGK----YLGTTSFDK-TWRLWDVDTGVELLLQ----EGHSRSVYGIAFHP-DGS- 424 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp-----~~~----~l~s~s~dg-~I~lwd~~~~~~~~~~----~~~~~~V~~l~~sp-dg~- 424 (579)
....+ |.-.++++-|.+ +++ .++.-+... .+.+-|......+... .+..+.+.|..+.- +++
T Consensus 88 ~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 88 AFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred ceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 32222 222333333332 222 111111110 0112222111122211 13345677776543 333
Q ss_pred -EEEEEeCCCeEEEEeCCCCeEEEE----------EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--c--eeE
Q 008050 425 -LAASCGLDALARVWDLRTGRSILA----------LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR--K--SLY 489 (579)
Q Consensus 425 -~l~sg~~dg~I~iwd~~~~~~~~~----------~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~--~--~~~ 489 (579)
+++.|.++|.+.+||+.++..+.. ...|..+|.++.|.+....=++|+.+..+..|++... . .-.
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 667888999999999999844433 3468899999999986555677888888999987642 2 222
Q ss_pred EEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 490 VIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.+...+..|..+.+-|| +.++++++.||.|+||+.++..++..+.-|.+.|++++|+|+...++.+|.|+.|.+|++
T Consensus 246 e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 33344566888999997 899999999999999999999999999999999999999999999999999999999986
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2e-20 Score=189.87 Aligned_cols=263 Identities=20% Similarity=0.278 Sum_probs=209.2
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC--------CCeeEEEEeCCCCCeEEEEEccCCCEEEE
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP--------RLQKFSALKGHTERATDVTFSPVSNHVAT 345 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~--------~~~~~~~l~~h~~~V~~l~~sp~~~~l~s 345 (579)
..+.+..++..|...|..+.|++....|++++.||.+++|++. ..+.+.+|.+|.++|.|++...++..+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 3455666888899999999999999999999999999999993 24578899999999999999999999999
Q ss_pred EeCCCcEEEEeCCC-----------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--C
Q 008050 346 SSADRTARLWNTDG-----------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS--R 412 (579)
Q Consensus 346 ~s~dg~I~iwd~~~-----------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~--~ 412 (579)
|+.||+|+.|++.. .....+.||.+.|+.+.+|.....|++++.||++++|+...... .++.... +
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99999999996321 23457889999999999999999999999999999999877665 3332211 2
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEecC-------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 413 SVYGIAFHPDG-SLAASCGLDALARVWDLRTGRSILALEGH-------VKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 413 ~V~~l~~spdg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-------~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
.-.++.|-... ...++...-+.-.++++..+..+..+... ...+.-+.+.|++.+.+++..|+.|+++|..+
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 23345544322 23333334444455555555555544321 13477788999999999999999999999999
Q ss_pred CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC
Q 008050 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE 538 (579)
Q Consensus 485 ~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 538 (579)
++.++....|...++++++.|. +-+|++|+.||.+++|.+....++.....|.
T Consensus 521 ~~~l~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cccchheeeccceecceeecCC-CceEEeecCCceeehhhccchheeecccccc
Confidence 9999999999999999999995 8899999999999999988877776666554
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=198.11 Aligned_cols=283 Identities=21% Similarity=0.311 Sum_probs=231.7
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-C
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-T 357 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~ 357 (579)
...+.||...|.|+.|...|.++++|+.|..++||.+.+..++..+.||.+.|+.++.+.++.++++++.|..|++|. .
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 345679999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE----EecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL----QEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~----~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
++..+..+.+|.+.|++++|+|-. +.+.||++++||.+-.-.+.. ......-+.++.|...+.-+++|+.|+
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 677889999999999999999865 778899999999872111111 012234567788888888999999999
Q ss_pred eEEEEeCCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 434 LARVWDLRTGRSILALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
.-..|.+..-. .+...+.-+.++.+ ..+.+++-.+..+++|++.+|...+.+.+|...+..+.++|-+..+..
T Consensus 339 ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 339 EARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred ccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 98888764311 11111111222211 245666667888999999999999999999999999999999888889
Q ss_pred EEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
++++||...|||+-.+.+++.+....+.+....||+||..++....-|.++|.....++
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999999999888877765445678888999999999988888999999875544
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.4e-18 Score=155.15 Aligned_cols=267 Identities=17% Similarity=0.187 Sum_probs=199.9
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCC----------CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPR----------LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
|.+-+|+|.+++|+.|+.+|.|.++.+++ ...+...++|.++|+.++|+ ..+|++|+ ||.|+-|.-.
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 44557899999999999999999999853 23455668999999999998 35666665 4999988732
Q ss_pred C-------CeeEEEe-------cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 008050 359 G-------SLLNTFQ-------GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 359 ~-------~~~~~~~-------~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
. +.+...+ ..--.|+++...|..+-++.++.|+.++-||+++|+....+.+|.+.|.++.--....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 2 1111111 1223688999999888888888999999999999999999999999999999866666
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEecC----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 425 LAASCGLDALARVWDLRTGRSILALEGH----------VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~----------~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
.+++|+.||++++||+++++++..+... ...|-+++.+ ..+|++|+. ..+.+|+++..++...|...
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEEecc
Confidence 8999999999999999999998877532 2235666654 458888764 56999999999888877653
Q ss_pred CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC-CEEEEEEcCCeEEEEE
Q 008050 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE-QSIATVSHDRWIKLWS 566 (579)
Q Consensus 495 ~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~ 566 (579)
..+..+.|.. ..+++++..+.|.-|.+. |.+-..........++..|+..- ++|-.++....+.|+.
T Consensus 247 -a~v~~v~F~~---d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 247 -ARVHLVDFVD---DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred -cceeEeeeec---ceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 5677788874 357777777889999864 55555555445556777775433 4455556666676653
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=165.96 Aligned_cols=241 Identities=21% Similarity=0.339 Sum_probs=186.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------------eeEEEe-cccCCeEEEEEe-------cCCCEEEEEe
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDGS-------------LLNTFQ-GHLDRLARMAFH-------PSGKYLGTTS 388 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-------------~~~~~~-~h~~~I~~l~~s-------p~~~~l~s~s 388 (579)
-...+.|+|||..|++-+.|..+.+|++... ....+. .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3456889999999999999999999994221 111111 123456666664 5677999999
Q ss_pred CCCeEEEEECCCCcEEEEEec--CCC---CeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCeEEEE--E-----ecCCCC
Q 008050 389 FDKTWRLWDVDTGVELLLQEG--HSR---SVYGIAFHPDGSLAASCGLDALARVWDL-RTGRSILA--L-----EGHVKP 455 (579)
Q Consensus 389 ~dg~I~lwd~~~~~~~~~~~~--~~~---~V~~l~~spdg~~l~sg~~dg~I~iwd~-~~~~~~~~--~-----~~~~~~ 455 (579)
.+.-|++||.-+|+....+.. |.. ...+++|+|||..|++| ...+|++||+ |.|+.... . .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999987766543 322 35689999999998876 5789999999 66653221 1 234667
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCC-eEEE
Q 008050 456 VLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDF-KLVK 532 (579)
Q Consensus 456 I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~-~~~~ 532 (579)
|.+++|+| +...+++|+....+-||.-..+.++..+.+|.+.|+.++|.+++ +.|++|+ .|-.|..||++.. .++.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhh
Confidence 89999999 55699999999999999988899999999999999999999985 5566665 4889999999864 4666
Q ss_pred EecCCCC---cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 533 SLSGHEA---KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 533 ~l~~h~~---~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
.+..|.+ .-.-.+..|+|++|++|+.||.|++||++..+.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 6766654 233456678999999999999999999988444
No 172
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.1e-18 Score=179.62 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=219.4
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC----CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR----LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
...|...++|.++||+++++|+|..||.|.+|.--. ......+.-|...|.++.|+++|.+|++|+..|.+.+|..
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 346777899999999999999999999999997432 2234456679999999999999999999999999999998
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec-----------CCCCeEEEEEcCCCCEE
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG-----------HSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~-----------~~~~V~~l~~spdg~~l 426 (579)
.....+-+..-.+.|..+.++|++.+.+....|+.|.+....+........+ ..+-.+.++++|..+.+
T Consensus 281 ~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 281 ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred cCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 7766666667788999999999999999999999999988755433322221 23446778899977788
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEec-----------CCCCeEEEEEcCCCCEEEEEe--------CC--CcEEEEECCCC
Q 008050 427 ASCGLDALARVWDLRTGRSILALEG-----------HVKPVLGISFSPNGYHLATGG--------ED--NTCRIWDLRKR 485 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~~~~~~~-----------~~~~I~si~~sp~g~~l~tgs--------~D--g~I~iwDl~~~ 485 (579)
+..+..|.|.+||+-+.+.+..+.. +.-.++.++.+-+|.+++|+- .| ..+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 8889999999999998877665531 122467788888899999874 23 35788976554
Q ss_pred ceeEEE-----eCCCCCeEEEEEeeCCCe-EEEEEECCCEEEEEECC----------CCeEEEEecCCCCcEEEEEEcCC
Q 008050 486 KSLYVI-----PAHSNLISQVKFEPQEGY-FLVTGSYDMTVKVWSGR----------DFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 486 ~~~~~~-----~~~~~~V~~v~~sp~~~~-~l~sgs~dg~I~iwd~~----------~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
..-+.+ ..|...+...++.+.... .+++++.||.++||-+. .|.+...-.-|..++++++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 333222 357666666665543333 78999999999999763 23343333347889999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCC
Q 008050 550 EQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~ 570 (579)
|. +++.+.|++|.+||..+.
T Consensus 521 Gs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 GS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred Cc-EEEEecCCEEEEecCCCh
Confidence 96 556667999999999884
No 173
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.7e-19 Score=179.43 Aligned_cols=243 Identities=22% Similarity=0.300 Sum_probs=194.9
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCE-EEEEeCCCeEEEEECC
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKY-LGTTSFDKTWRLWDVD 399 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~-l~s~s~dg~I~lwd~~ 399 (579)
..+.+|++.|.+|...+.|.+|++|+.||+|+||.+. +.++.++. ..+.|.|++|+|.+.. ++.+..+..+.|.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 4568999999999999999999999999999999954 45555554 5568999999997762 2233333334444321
Q ss_pred CC-------------------------------------cEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEe
Q 008050 400 TG-------------------------------------VELLLQEGHSRSVYGIAFHPDGSLAASCGLD---ALARVWD 439 (579)
Q Consensus 400 ~~-------------------------------------~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d---g~I~iwd 439 (579)
-| .-+...-.|...|..+.||..|.+|++..-+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 0123344678899999999999999987654 4788999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
+...+...-|....+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..++++|. |.-|+.|++|+.
T Consensus 553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~-GDnli~gs~d~k 630 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPN-GDNLILGSYDKK 630 (733)
T ss_pred cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCC-CCeEEEecCCCe
Confidence 9877766667666778999999999888988875 56999999988888888888889999999995 667888999999
Q ss_pred EEEEECCCC-eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 520 VKVWSGRDF-KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 520 I~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
+..||+.-. ++.+++..|...+++++|++.-.++++|+.||++.||--
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999998754 577888999999999999999999999999999998853
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.5e-19 Score=183.62 Aligned_cols=252 Identities=21% Similarity=0.303 Sum_probs=198.4
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCe
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG---------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT 392 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~ 392 (579)
.++..|.+.|..+.|++....|++++.||.|++|++.. +.+.+|.+|.++|.|+++..++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 35667999999999999999999999999999999721 567899999999999999999999999999999
Q ss_pred EEEEECCCC----------cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC--CCCeEEEE
Q 008050 393 WRLWDVDTG----------VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGH--VKPVLGIS 460 (579)
Q Consensus 393 I~lwd~~~~----------~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--~~~I~si~ 460 (579)
|+.|++-.. .....+.||.+.|+.+++|.....|++++.||++++|+...... .+|... .+--.++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965321 22345679999999999999988999999999999999876655 333322 22234555
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeCC-------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE
Q 008050 461 FSPNG-YHLATGGEDNTCRIWDLRKRKSLYVIPAH-------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK 532 (579)
Q Consensus 461 ~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~ 532 (579)
|-... .+.++...-+.-.++|+.....+..+... ...+..+.++|. ..+.+++..|+.|+++|..+++++.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCceecccccccccch
Confidence 54332 23333333343444555545444444321 234677888885 6788999999999999999999999
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 533 SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 533 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
....|...++++++.++|-+|++++.||.+++|++..+.+...
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 9999999999999999999999999999999999987765543
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=5.3e-17 Score=167.33 Aligned_cols=264 Identities=11% Similarity=0.169 Sum_probs=179.3
Q ss_pred EEEecCCeEEEEeCCC-Ce--eEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC-CeeEEEe--cccCCeEE
Q 008050 302 ATSSLSGVVKIWSMPR-LQ--KFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDG-SLLNTFQ--GHLDRLAR 374 (579)
Q Consensus 302 atgs~dg~I~iwd~~~-~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~-~~~~~~~--~h~~~I~~ 374 (579)
++...++.|.+|++.+ ++ .+..+. +.+....+.++|++++|++++ .++.|.+|+++. ..+.... ...+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 32 444444 446678899999999987765 478999999753 2222111 23345678
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCeEEEE
Q 008050 375 MAFHPSGKYLGTTSF-DKTWRLWDVDTGV----ELLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDLRTGRSILA 448 (579)
Q Consensus 375 l~~sp~~~~l~s~s~-dg~I~lwd~~~~~----~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~~~~~~ 448 (579)
+.|+|++++|++++. ++.|.+|++.+.. .+... .+.....+++++|+++++++++ .++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999999888775 7899999997422 22222 2234567789999999886555 569999999986432211
Q ss_pred -----Ee-cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--C--ceeEEEeCC------CCCeEEEEEeeCCCeEE
Q 008050 449 -----LE-GHVKPVLGISFSPNGYHLATGGE-DNTCRIWDLRK--R--KSLYVIPAH------SNLISQVKFEPQEGYFL 511 (579)
Q Consensus 449 -----~~-~~~~~I~si~~sp~g~~l~tgs~-Dg~I~iwDl~~--~--~~~~~~~~~------~~~V~~v~~sp~~~~~l 511 (579)
.. ........+.|+|+|+++++++. ++.|.+||+.. + +.+..+... ......+.++|+ +.++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd-g~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD-GRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC-CCEE
Confidence 11 11234678999999999988876 89999999973 2 233333321 112346889997 5555
Q ss_pred EEE-ECCCEEEEEECCCCe----EEEEecCCCCcEEEEEEcCCCCEEEEEEc-CCeEEEEEcCC
Q 008050 512 VTG-SYDMTVKVWSGRDFK----LVKSLSGHEAKVTSLDIHPDEQSIATVSH-DRWIKLWSTRN 569 (579)
Q Consensus 512 ~sg-s~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~iW~~~~ 569 (579)
+++ ..++.|.+|++.... .+..+... .....+.|+++|++|++++. +++|.+|+++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 555 457899999985432 23333221 24567899999999988775 89999998853
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.1e-18 Score=183.25 Aligned_cols=287 Identities=18% Similarity=0.283 Sum_probs=217.5
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCC---CCCeEEEEEcc--CCCEEEEEeCCCcEEEEe-
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGH---TERATDVTFSP--VSNHVATSSADRTARLWN- 356 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~sp--~~~~l~s~s~dg~I~iwd- 356 (579)
.++..+-..+.|+|-...++++...-.|.|||...++.+..|..+ ...|+.+++-. |..++++|+.||.|+||+
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 445556778889999999999998889999999999988877653 45788998875 446799999999999998
Q ss_pred -CCC----CeeEEEecc-------cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCeEEEEEcC-C
Q 008050 357 -TDG----SLLNTFQGH-------LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHP-D 422 (579)
Q Consensus 357 -~~~----~~~~~~~~h-------~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V~~l~~sp-d 422 (579)
.+. +.+..+.+- .+.-.-+.|.....+|++++.-..|+|||........-. .+....|+++.-+- .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 221 223322221 112245678887778888888999999999887665543 24455677766544 4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCC--eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCce--eEEEeCC
Q 008050 423 GSLAASCGLDALARVWDLRTGR---SILALEGHVKP--VLGISFSPNGYH-LATGGEDNTCRIWDLRKRKS--LYVIPAH 494 (579)
Q Consensus 423 g~~l~sg~~dg~I~iwd~~~~~---~~~~~~~~~~~--I~si~~sp~g~~-l~tgs~Dg~I~iwDl~~~~~--~~~~~~~ 494 (579)
|+++++|..||.|++||.|... .+..++.|... |..+.+.++|.- |++|+.||.|++||+|.... ..++..|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 7899999999999999998643 46777888877 999999997755 99999999999999997422 2233333
Q ss_pred C--C-CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-------CCCcEEEEEEcCCCCEEEEEEcCCeEEE
Q 008050 495 S--N-LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG-------HEAKVTSLDIHPDEQSIATVSHDRWIKL 564 (579)
Q Consensus 495 ~--~-~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~s~dg~~L~s~s~Dg~I~i 564 (579)
. + .++++..+++ ..++++|+. +.|+||++. |+.+..++. ..+.+++++|+|..-+|++|+.|.+|.|
T Consensus 1301 ~~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEH-APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred cccCccceeeeeccC-CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 2 3 5899999986 778898887 999999975 444433332 2345799999999888999999999999
Q ss_pred EEcCCCCc
Q 008050 565 WSTRNKGD 572 (579)
Q Consensus 565 W~~~~~~~ 572 (579)
|...+...
T Consensus 1378 Ys~~k~~~ 1385 (1387)
T KOG1517|consen 1378 YSCEKPRL 1385 (1387)
T ss_pred eecCCcCC
Confidence 99876643
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.7e-18 Score=166.43 Aligned_cols=231 Identities=23% Similarity=0.372 Sum_probs=178.6
Q ss_pred CCCEEEEE---ecCCeEEEEeCC-CCee---EEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCC--------C
Q 008050 297 DGNLLATS---SLSGVVKIWSMP-RLQK---FSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTDG--------S 360 (579)
Q Consensus 297 dg~~latg---s~dg~I~iwd~~-~~~~---~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~--------~ 360 (579)
+.++|++. +..|...+.-+. +|+. .-.+.+|.++|..+.|+|.+ +.|++||.|.+|.||.+-. +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 34566553 233444444332 2222 22346899999999999955 5689999999999999432 4
Q ss_pred eeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 361 LLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
.+..+.+|..+|..+.|||.. +.|++++.|.+|.+||+.+|+.+..+. |...|++++|+.||++|++++.|..|+|||
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 677899999999999999965 588999999999999999999888876 999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEe---CCCcEEEEECCCCc---eeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 440 LRTGRSILALEGHVKP-VLGISFSPNGYHLATGG---EDNTCRIWDLRKRK---SLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~-I~si~~sp~g~~l~tgs---~Dg~I~iwDl~~~~---~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
.++++.+..-.+|.+. -..+-|..+|..+-+|. .+..+-+||-.+.. .+..+.. ++.|.---|+++.+-+.+
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYL 280 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEE
Confidence 9999999888777653 34566778888555554 56789999876543 3344444 345655667887666667
Q ss_pred EEECCCEEEEEECCCCe
Q 008050 513 TGSYDMTVKVWSGRDFK 529 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~ 529 (579)
+|-.|+.|+.|.+.+-.
T Consensus 281 ~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 281 CGKGDSSIRYFEITNEP 297 (472)
T ss_pred EecCCcceEEEEecCCC
Confidence 78889999999987644
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=2.2e-18 Score=173.44 Aligned_cols=264 Identities=18% Similarity=0.233 Sum_probs=200.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEE-E-------ccCCCEEEEEeCCCcEEEE
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVT-F-------SPVSNHVATSSADRTARLW 355 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~-~-------sp~~~~l~s~s~dg~I~iw 355 (579)
-|...+.||.|+.+...+.+++.+..++-||+.+.. ...+.-....|.... . -...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 355666799999888777777655555555554322 111111111111111 1 1134679999999999999
Q ss_pred eCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 356 NTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 356 d~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
+..++....+..|.+.+.+-.|+++|.-|++++.||.|++|.- +|-...+......+|+|++|.|+.+.++.+ ..+.+
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~ 168 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHI 168 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeE
Confidence 9999988899999999999999999999999999999999985 333333333456789999999988766554 35677
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
.|=.+.-...+..++.|.+-|.++.|++..+.+++|++|-..+|||- .|..++.-..|..+|++++|+|+ ..++.++
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd--~~~~v~S 245 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE--KDYLLWS 245 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc--cceeeee
Confidence 78788777888899999999999999999999999999999999996 68888888899999999999996 4455555
Q ss_pred CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 516 YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
++ +++ .-....+.|..++||+||..+++|+..|.+.+=
T Consensus 246 ~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 246 YN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 43 333 112345779999999999999999999987653
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=3e-18 Score=163.59 Aligned_cols=239 Identities=22% Similarity=0.378 Sum_probs=186.9
Q ss_pred CCCCCeeEEEEcCC----CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCC
Q 008050 284 GDDRPLSGCSYSHD----GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTD 358 (579)
Q Consensus 284 gh~~~I~~~~~spd----g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~ 358 (579)
.|......|+|+-+ ..++|.|+.-|.|+|.|+.+++....+.+|...|+.|.|+|+. ++++++|.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888999865 3489999999999999999999999999999999999999975 688999999999999976
Q ss_pred CC-eeEEE---ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE----------------------------EE
Q 008050 359 GS-LLNTF---QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL----------------------------LL 406 (579)
Q Consensus 359 ~~-~~~~~---~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~----------------------------~~ 406 (579)
.. ++..+ .+|.+.|.++.|+.+|.+|++++.|.++.+|++...+.. ..
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 64 44443 579999999999999999999999999999999732110 01
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCe-------------EEEEEecCCCCeEEEEE--cCCCCEEEE
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR-TGR-------------SILALEGHVKPVLGISF--SPNGYHLAT 470 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~-~~~-------------~~~~~~~~~~~I~si~~--sp~g~~l~t 470 (579)
...|...|-|+.|. |.++++-+-++.|..|..- -++ .+..+......|.-|.| .+-++.|+.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12455566666665 5689998889999999872 111 23344444555665554 556889999
Q ss_pred EeCCCcEEEEECCCCceeE--EEe--CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 471 GGEDNTCRIWDLRKRKSLY--VIP--AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~~~--~~~--~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
|...|.|++||++...+.. ++. .....|.+.+|+.+ +.+|+..+.|++|.-||.
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d-gs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD-GSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc-CcEEEEEeCCCcEEEEEe
Confidence 9999999999999866521 221 23456999999997 788888899999999984
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=2.4e-17 Score=155.10 Aligned_cols=276 Identities=22% Similarity=0.334 Sum_probs=203.1
Q ss_pred CCeeEEEEcC---CCCEEEEEec----CCeEEEEeCC--CCeeEEEE-eCCCCCeEEEEEccCCC-----EEEEEeCCCc
Q 008050 287 RPLSGCSYSH---DGNLLATSSL----SGVVKIWSMP--RLQKFSAL-KGHTERATDVTFSPVSN-----HVATSSADRT 351 (579)
Q Consensus 287 ~~I~~~~~sp---dg~~latgs~----dg~I~iwd~~--~~~~~~~l-~~h~~~V~~l~~sp~~~-----~l~s~s~dg~ 351 (579)
-++.++.||. .+.+|+.|+. .+.|.|..+. +++.+..- ..|.-+++.+.|.|+.. +|+++ +..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 3577888883 2457888873 5667776554 34433322 25888999999999863 45544 357
Q ss_pred EEEEeCCC--Cee---E-----EEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcE---EEEEecCCCCeEEE
Q 008050 352 ARLWNTDG--SLL---N-----TFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVE---LLLQEGHSRSVYGI 417 (579)
Q Consensus 352 I~iwd~~~--~~~---~-----~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~---~~~~~~~~~~V~~l 417 (579)
+++|.+.. ..+ . +-..+..+++++.|+. +-+++.+++-|-+..+||++++.. ...+-.|.+.|+.+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99999652 111 1 1234567899999987 556889999999999999998733 34455899999999
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCCeEEEEEcC-CCCEEEEEeCC-CcEEEEECCC-CceeEE
Q 008050 418 AFHPDGS-LAASCGLDALARVWDLRTGRSILAL---EGHVKPVLGISFSP-NGYHLATGGED-NTCRIWDLRK-RKSLYV 490 (579)
Q Consensus 418 ~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~I~si~~sp-~g~~l~tgs~D-g~I~iwDl~~-~~~~~~ 490 (579)
+|..++. .|++.|.||.+++||+|..+.-..+ .....+...++|++ +-+++++-..| ..|.|.|+|. ..++..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 9998654 8899999999999999986543322 22246788999998 45777776544 5799999996 567889
Q ss_pred EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe------EEEEecCCCCcEEEEEEcC-CCCEEEEEEcCCeEE
Q 008050 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK------LVKSLSGHEAKVTSLDIHP-DEQSIATVSHDRWIK 563 (579)
Q Consensus 491 ~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~ 563 (579)
+..|.+.|+.++|.|.+...|++++.|..+.+||+...- ++..+. ..+.|..+.|++ .+.+|+.+. ++++.
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeee
Confidence 999999999999999999999999999999999986532 222233 456799999996 566777765 45565
Q ss_pred EEE
Q 008050 564 LWS 566 (579)
Q Consensus 564 iW~ 566 (579)
|..
T Consensus 361 iLR 363 (364)
T KOG0290|consen 361 ILR 363 (364)
T ss_pred EEe
Confidence 543
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.7e-18 Score=172.32 Aligned_cols=213 Identities=23% Similarity=0.354 Sum_probs=165.8
Q ss_pred cceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEE-eCCCCCeEEEEEcc--CCCEEEEEeCC
Q 008050 273 VESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL-KGHTERATDVTFSP--VSNHVATSSAD 349 (579)
Q Consensus 273 ~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp--~~~~l~s~s~d 349 (579)
+..+.+...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| ++.++++|..|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 3445667778899999999999999999999999999999999888877776 58999999999998 45689999999
Q ss_pred CcEEEEeCCC-----------CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEE----------EEE
Q 008050 350 RTARLWNTDG-----------SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVEL----------LLQ 407 (579)
Q Consensus 350 g~I~iwd~~~-----------~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~----------~~~ 407 (579)
..|+++|++. .....+..|..+|..++..|++ +.+.+++.||+++-||++..... ..+
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 9999999763 3445667899999999999999 78999999999999999762111 111
Q ss_pred ecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC--------e----------EEEEEe-cCC-----------CCe
Q 008050 408 EGHSRSVYGIAFHPD-GSLAASCGLDALARVWDLRTG--------R----------SILALE-GHV-----------KPV 456 (579)
Q Consensus 408 ~~~~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~--------~----------~~~~~~-~~~-----------~~I 456 (579)
....-...|+.++|. ..+|++|+.|-..++||.+.. . ++..|. +|. ..+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 122245778999994 558999999999999995421 1 122221 121 125
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 008050 457 LGISFSPNGYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
+-+.|+|||.-|++.-..-.|++||+..+
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 67889999988877766668999987543
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=3.7e-18 Score=175.48 Aligned_cols=243 Identities=19% Similarity=0.328 Sum_probs=194.2
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
.+..+++||..-|.|++|+.||+.+++|+.|..|.+|+-.-...+ . ..|.+.|.|+.|+|-...|++++-+ ..-+|+
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS 120 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWS 120 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-eccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence 345578899999999999999999999999999999985422222 2 2599999999999999999998873 577898
Q ss_pred CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCC-----CEEEEE
Q 008050 357 TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ--EGHSRSVYGIAFHPDG-----SLAASC 429 (579)
Q Consensus 357 ~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~--~~~~~~V~~l~~spdg-----~~l~sg 429 (579)
.+.+.+...+ ...++.+++|..||++|+.|-.+|+|.+-+-......... .+.+.+|++++|+|.. ..+++.
T Consensus 121 ~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 121 PEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 7665554333 3467889999999999999999999999876444433333 2567899999999953 378888
Q ss_pred eCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCe
Q 008050 430 GLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGY 509 (579)
Q Consensus 430 ~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~ 509 (579)
....++.+|.+. |+.+..-+.-.-...|+.+.+||.+++.|+.|+.+.+|. +.|-.+.++.....+|..+...|+ ++
T Consensus 200 DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN-sQ 276 (1081)
T KOG1538|consen 200 DWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN-SQ 276 (1081)
T ss_pred eccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC-Cc
Confidence 888888888874 454443333334467899999999999999999999997 678888888778889999999995 88
Q ss_pred EEEEEECCCEEEEEECC
Q 008050 510 FLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~ 526 (579)
+++.|+.||+|..|++-
T Consensus 277 ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEEEccCeeehhhhH
Confidence 99999999999999853
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.3e-19 Score=175.49 Aligned_cols=297 Identities=21% Similarity=0.293 Sum_probs=233.3
Q ss_pred cceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEE-eCCCCCeEEEEEccCC--CEEEEEeCC
Q 008050 273 VESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL-KGHTERATDVTFSPVS--NHVATSSAD 349 (579)
Q Consensus 273 ~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp~~--~~l~s~s~d 349 (579)
+..+.+...+.+|.+.|..+.|+..|..|++|+.|..|.+||+..+.....+ .+|...|..-.|-|.. ..+++++.|
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence 3445566778899999999999999999999999999999999988877666 4799999999998853 569999999
Q ss_pred CcEEEEeCC--CC--eeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEE---EEecCCC---CeEEEE
Q 008050 350 RTARLWNTD--GS--LLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELL---LQEGHSR---SVYGIA 418 (579)
Q Consensus 350 g~I~iwd~~--~~--~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~---~~~~~~~---~V~~l~ 418 (579)
|.|++=.+. +. ....+..|.+.|..++.-|... -|.+++.|+.+.-+|++.+.... ....+.. ..+.++
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 999998732 22 2455678999999999999665 68899999999999998764332 2223333 577889
Q ss_pred EcCCCC-EEEEEeCCCeEEEEeCCCCeE------EEEEec------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 008050 419 FHPDGS-LAASCGLDALARVWDLRTGRS------ILALEG------HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK- 484 (579)
Q Consensus 419 ~spdg~-~l~sg~~dg~I~iwd~~~~~~------~~~~~~------~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~- 484 (579)
.+|... .+++|+.|-.+++||.+.-.. +..+.. ..-.|+++.|+.++.-|+++..|-.|++|.-..
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 999554 899999999999999875322 222322 234599999998887788888888999995321
Q ss_pred -C----------ceeEE-EeCCCC--CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 485 -R----------KSLYV-IPAHSN--LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 485 -~----------~~~~~-~~~~~~--~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
| ..+.. +++|.+ .|..+-|---...|+++|+.-|.|.||+-++++.+..+.+...-|+||.=+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 12222 667754 366666653247899999999999999999999999888877789999999999
Q ss_pred CEEEEEEcCCeEEEEEcCC
Q 008050 551 QSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~ 569 (579)
..|+++|-|..||||....
T Consensus 449 PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred chhhccCCccceeeecCCc
Confidence 9999999999999998743
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=2e-17 Score=157.62 Aligned_cols=220 Identities=21% Similarity=0.271 Sum_probs=179.4
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC---eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CC--
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL---QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DG-- 359 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~-- 359 (579)
-.+|+|.+|++|+..+|++..+..|.||..... +..++++.|...|++|+|+|..+.|++|+.|..-++|.. ++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999998654 467888999999999999999999999999999999996 44
Q ss_pred -CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE----EEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 360 -SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL----LLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 360 -~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~----~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
+....+..++...+++.|+|.++.|++|+....|.+|-++...-- .+...+.+.|++++|+|++-+++.|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 455567778899999999999999999999999999887654332 233456788999999999999999999999
Q ss_pred EEEEeCC-----C-------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCC
Q 008050 435 ARVWDLR-----T-------------GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHS 495 (579)
Q Consensus 435 I~iwd~~-----~-------------~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~ 495 (579)
.++|..- . |..+..+....+.|..+.|+++|..|+-.+.|+.+.+-|..... .+.......
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~ 249 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ 249 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence 9998631 1 23344444566789999999999999999999999999976553 333333333
Q ss_pred CCeEEEEEee
Q 008050 496 NLISQVKFEP 505 (579)
Q Consensus 496 ~~V~~v~~sp 505 (579)
-+..++.|-.
T Consensus 250 lP~ls~~~is 259 (361)
T KOG1523|consen 250 LPLLSVSWIS 259 (361)
T ss_pred CCceeeEeec
Confidence 5566666653
No 185
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.2e-18 Score=172.94 Aligned_cols=270 Identities=19% Similarity=0.249 Sum_probs=223.1
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 367 (579)
.-..+.|+.+|.+|+.|+..|.|-.+|+.+++..+.+. -...|.++.|..+.++|+++- ...++|||..|..++.++.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehhh
Confidence 34567899999999999999999999999999988876 456799999998888877764 5789999999998888886
Q ss_pred ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 368 h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|...+.+.+.
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence 6 467899999999999999999999999999999988887778888999999998899999999999999999999999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE-CC
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS-GR 526 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd-~~ 526 (579)
.+-.|.++|.+|++.++|+|++|.+.|..++|||+|+...+.++.. ......+++|.. .+|+ .+....|.||. .-
T Consensus 288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqk--glLA-~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQK--GLLA-LSYGDHVQIWKDAL 363 (545)
T ss_pred HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccc--ccee-eecCCeeeeehhhh
Confidence 9999999999999999999999999999999999999888877766 455677888853 3444 45556799994 22
Q ss_pred CC--eEEEEecCC--CCcEEEEEEcCCCCEEEEEEcCCeEEE
Q 008050 527 DF--KLVKSLSGH--EAKVTSLDIHPDEQSIATVSHDRWIKL 564 (579)
Q Consensus 527 ~~--~~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~I~i 564 (579)
.+ ..-..+-.| .+.|.++.|.|-...|..|...|.-.|
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 21 111112222 357999999998777777766664333
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=5.6e-17 Score=158.25 Aligned_cols=207 Identities=21% Similarity=0.360 Sum_probs=168.5
Q ss_pred eEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCeEEEEEcCC-CCEEEEEeCC
Q 008050 362 LNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTG-------VELLLQEGHSRSVYGIAFHPD-GSLAASCGLD 432 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~-------~~~~~~~~~~~~V~~l~~spd-g~~l~sg~~d 432 (579)
.-.+.+|.+.|..++|+| +.+.|++||.|.+|.+|++-.+ +.+..+.+|...|..+.|||. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 345678999999999999 4558899999999999998654 345677899999999999995 4588999999
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCC-eEEEEEeeCCCeEE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL-ISQVKFEPQEGYFL 511 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~-V~~v~~sp~~~~~l 511 (579)
..|.+||+.+|+.+.++. |...|++++|+.||.+|++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+ +.++
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~-g~i~ 231 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS-GKIF 231 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc-Ccee
Confidence 999999999999999988 9999999999999999999999999999999999999988777653 344566664 5555
Q ss_pred EEEE---CCCEEEEEECCCCe---EEEEecCCCCcEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCC
Q 008050 512 VTGS---YDMTVKVWSGRDFK---LVKSLSGHEAKVTSLDIHPDEQSIATVS-HDRWIKLWSTRNKG 571 (579)
Q Consensus 512 ~sgs---~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~~~~ 571 (579)
.+|. ++..+-+||..+.+ .+..+... +.|.---|.+|.+.|+.+| .|+.|+.|.+.+..
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5553 36789999866543 34455543 4466666889988887665 78999999987654
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=2.5e-15 Score=146.11 Aligned_cols=279 Identities=18% Similarity=0.204 Sum_probs=203.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC--CcEEEEeCCCCee
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD--RTARLWNTDGSLL 362 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d--g~I~iwd~~~~~~ 362 (579)
....+..+.|+.+...|.+|+.|| .++|+................|.-+-|+. .+++..+.+ ..++++++..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 345677778999999999999888 47788776555333333333455555653 566665554 3588888665544
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe---cCCCCeEEEEEcCCCCEEEEEe--CCCeEEE
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE---GHSRSVYGIAFHPDGSLAASCG--LDALARV 437 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~---~~~~~V~~l~~spdg~~l~sg~--~dg~I~i 437 (579)
..-......|.++.++ .+.|+++-.+. |+|||+++.+.+.++. .+...+..++++..+.+++.-+ ..|.|.+
T Consensus 81 ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 4444456678888886 44566665554 9999999988887664 3455677777777777887643 5789999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEEeCCC--CCeEEEEEeeCCCeEEEEE
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNT-CRIWDLRKRKSLYVIPAHS--NLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~-I~iwDl~~~~~~~~~~~~~--~~V~~v~~sp~~~~~l~sg 514 (579)
||+.+-+.+..+..|.+.+-+++|+++|.+||+++..|+ |+||.+.+|+.++.|.-.. ..|.+++|+++ +.+|++.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d-s~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD-SQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC-CCeEEEe
Confidence 999999999999999999999999999999999999886 7899999999999997543 34789999997 7899999
Q ss_pred ECCCEEEEEECCCCeE-------------------------------------EEEecCCCCcE-EEEEEc--CCCCEEE
Q 008050 515 SYDMTVKVWSGRDFKL-------------------------------------VKSLSGHEAKV-TSLDIH--PDEQSIA 554 (579)
Q Consensus 515 s~dg~I~iwd~~~~~~-------------------------------------~~~l~~h~~~V-~~l~~s--~dg~~L~ 554 (579)
|..++|++|.+..-.. ........+.. ..+.+. +...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 9999999998653210 00011111111 222333 4678899
Q ss_pred EEEcCCeEEEEEcCCC
Q 008050 555 TVSHDRWIKLWSTRNK 570 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~ 570 (579)
.++.||.++.|.++-+
T Consensus 317 vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcCCeEEEEEcCCC
Confidence 9999999999998763
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=3e-17 Score=154.23 Aligned_cols=223 Identities=23% Similarity=0.352 Sum_probs=172.2
Q ss_pred CCcEEEEeCCCC----eeEEEecccCCeEEEEEecCCCEEE-EEeCC-------CeEEEEECCCCcE---------EEEE
Q 008050 349 DRTARLWNTDGS----LLNTFQGHLDRLARMAFHPSGKYLG-TTSFD-------KTWRLWDVDTGVE---------LLLQ 407 (579)
Q Consensus 349 dg~I~iwd~~~~----~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~d-------g~I~lwd~~~~~~---------~~~~ 407 (579)
|+.|.+.+++.+ ....|..|.+.|+.++-+|-.+.++ ++..+ -...||.+..... +..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 577777764432 2345677889999999999666444 44332 2478998864322 1122
Q ss_pred e-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEe-----cCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 008050 408 E-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS-ILALE-----GHVKPVLGISFSP--NGYHLATGGEDNTCR 478 (579)
Q Consensus 408 ~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~-~~~~~-----~~~~~I~si~~sp--~g~~l~tgs~Dg~I~ 478 (579)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 1 3446899999999998888776 89999999998766 33332 2455678889999 78888776 478999
Q ss_pred EEECCCCceeEEEe-CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC-CeEEEEecCCCCcEEEEEEcCC-CCEEEE
Q 008050 479 IWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD-FKLVKSLSGHEAKVTSLDIHPD-EQSIAT 555 (579)
Q Consensus 479 iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d-g~~L~s 555 (579)
.||+|+.++...+. +|...|..+.|+|+...+|++|+.||.|+|||.+. ..++..+.+|...|+++.|+|. .++|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988877775 68889999999998888999999999999999875 4588999999999999999994 567899
Q ss_pred EEcCCeEEEEEcCCCCcc
Q 008050 556 VSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 556 ~s~Dg~I~iW~~~~~~~~ 573 (579)
||.|..|.+|....-..+
T Consensus 277 ~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSE 294 (370)
T ss_pred cCCCceeEEEeccccccc
Confidence 999999999987655433
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=6.3e-17 Score=172.46 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=168.8
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCE
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY 383 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~ 383 (579)
+..|.+||..... ...+..|...+.+..|+|+|+.|+.++.+ ..|++||+.+.....+....+....++|+|+|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4689999986554 45667788899999999999999887754 3699999776543334333334457899999998
Q ss_pred EEEEe-CCCeEE--EEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC-eEEEEEecCCCCeEE
Q 008050 384 LGTTS-FDKTWR--LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDLRTG-RSILALEGHVKPVLG 458 (579)
Q Consensus 384 l~s~s-~dg~I~--lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~-~~~~~~~~~~~~I~s 458 (579)
|+.++ .+|.+. +||+.++.... +..+...+.+..|+|||+.|+.++ .+|...||++... .....+ .+.. .+
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~ 337 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YS 337 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CC
Confidence 88765 577655 45666665443 345666788899999999766554 5788888876532 222222 3333 46
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC--CCCeEEEEecC
Q 008050 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG--RDFKLVKSLSG 536 (579)
Q Consensus 459 i~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~--~~~~~~~~l~~ 536 (579)
..|+|+|++|++++.++ +.+||+.+++.......+ ....+.|+|+ +.+|+.++.+|.+.+|.+ .++..+..+..
T Consensus 338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPd-G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 338 AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPN-GIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCC-CCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 78999999998888765 666999888654332222 2356789997 777888888888887774 46788888988
Q ss_pred CCCcEEEEEEcCC
Q 008050 537 HEAKVTSLDIHPD 549 (579)
Q Consensus 537 h~~~V~~l~~s~d 549 (579)
|.+.+...+|+|-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 8888999999974
No 190
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=1.6e-16 Score=155.86 Aligned_cols=256 Identities=24% Similarity=0.359 Sum_probs=191.9
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC--------C--------CeeEEEEeCCCCCeEEEEEc
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP--------R--------LQKFSALKGHTERATDVTFS 337 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~--------~--------~~~~~~l~~h~~~V~~l~~s 337 (579)
..+.....+..|.+.|++|.|+|+|++||+|+.+|.|.+|... + ......+.+|...|..++|+
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence 4667888999999999999999999999999999999999865 2 23445677899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe--------
Q 008050 338 PVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE-------- 408 (579)
Q Consensus 338 p~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-------- 408 (579)
+++.++++++.|+.+++||+ .|.....+..|...+..++|.|-++++++-+.|...+.+++.....+....
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 99999999999999999995 567778888999999999999999999999999877777665433221110
Q ss_pred -----------cCC----CCeEEEEEcCCCCEEEEEeC----CCe-----EEEEeCCC-CeEEEEEecCCCCeEEEEEcC
Q 008050 409 -----------GHS----RSVYGIAFHPDGSLAASCGL----DAL-----ARVWDLRT-GRSILALEGHVKPVLGISFSP 463 (579)
Q Consensus 409 -----------~~~----~~V~~l~~spdg~~l~sg~~----dg~-----I~iwd~~~-~~~~~~~~~~~~~I~si~~sp 463 (579)
-|. .-...++|+|+|.++++... .+. .++|+-.. .+++..+.+...+...+.|+|
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 011 12345789999999887541 222 23443221 234445555555555555554
Q ss_pred ------------------CCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 464 ------------------NGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 464 ------------------~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
-+..++.++. +.|+|||..+..++.... .|-..|+.++|+++ |.+++..|.||...+..
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~d-g~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD-GSVLLVSSTDGFCSLVT 370 (434)
T ss_pred eEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCC-CcEEEEeccCCceEEEE
Confidence 1234555554 579999998888777664 48889999999996 78888889999888887
Q ss_pred CCCCeEE
Q 008050 525 GRDFKLV 531 (579)
Q Consensus 525 ~~~~~~~ 531 (579)
+..+++-
T Consensus 371 fe~~elg 377 (434)
T KOG1009|consen 371 FEPWELG 377 (434)
T ss_pred Ecchhcc
Confidence 7665543
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=1.4e-16 Score=169.59 Aligned_cols=241 Identities=20% Similarity=0.243 Sum_probs=184.2
Q ss_pred CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCee--EEEE----eCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEe
Q 008050 286 DRPLSGCSYSHD-GNLLATSSLSGVVKIWSMPRLQK--FSAL----KGHTERATDVTFSPVSN--HVATSSADRTARLWN 356 (579)
Q Consensus 286 ~~~I~~~~~spd-g~~latgs~dg~I~iwd~~~~~~--~~~l----~~h~~~V~~l~~sp~~~--~l~s~s~dg~I~iwd 356 (579)
...|+|+.|+|. .++|+.|+.+|.|.+||+..+.. ...+ ..|..+|+.+.|..+.. -|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 568999999995 57888889999999999987665 2222 35899999999987544 499999999999998
Q ss_pred CCCCe-------eEEEe------cccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCC---Cc-----EEEEEecCCCCe
Q 008050 357 TDGSL-------LNTFQ------GHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDT---GV-----ELLLQEGHSRSV 414 (579)
Q Consensus 357 ~~~~~-------~~~~~------~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~---~~-----~~~~~~~~~~~V 414 (579)
++.-. ..... .....++++.|.+.. ..|++|+..|.|..-+-.. .. ....+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 54311 11111 123467899998854 5788999999988743322 22 122455788999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--ceeEE
Q 008050 415 YGIAFHPDGSLAASCGLDALARVWDLR-TGRSILALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKR--KSLYV 490 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~--~~~~~ 490 (579)
+++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||. ...|+++..||.|.+||+... .++.+
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 999999977655555559999999988 67788888888888999999994 567888889999999999753 45555
Q ss_pred EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 491 ~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
...+....+.+.|++. +.+|++|...|++.+|++..
T Consensus 482 ~~~~~~~l~~~~~s~~-g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 482 QKVCSPALTRVRWSPN-GKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccceeecCCC-CcEEEEecCCCcEEEEEcCc
Confidence 5556666777888874 89999999999999999853
No 192
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.8e-16 Score=157.60 Aligned_cols=284 Identities=18% Similarity=0.182 Sum_probs=214.6
Q ss_pred CCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 008050 284 GDDRPLSGCSYSHDGNLL-ATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~l-atgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~ 362 (579)
+|...-+.+..+|||+|+ ++|...-.|++||+.+......-.-....|.-.-.+.|-..++.-..|.+|-+....|...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 456667889999999976 5677889999999988765543222334555555565555666667777777766544322
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
..-... .-..++++.-.--|++++....|+-++++.|..+..+....+.++++..++-..+|++|+.+|.|..||.+.
T Consensus 129 ~~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 221111 124566766555677777788899999999999988888889999999999988999999999999999998
Q ss_pred CeEEEEEec------CCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCeE
Q 008050 443 GRSILALEG------HVK-----PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 443 ~~~~~~~~~------~~~-----~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~ 510 (579)
...+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-. ...-+|..+.|.+.++.-
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 876666542 222 39999999999999999999999999999988876543 234568888887653333
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
-+.......++|||-.+|+....+... ..+..+|+-|++.+++++-.++.+..|=+..-
T Consensus 287 ~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 287 KVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred eEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 333445678999999999998888744 44999999999999999998888877766543
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=2.6e-16 Score=172.16 Aligned_cols=289 Identities=19% Similarity=0.248 Sum_probs=202.7
Q ss_pred EeeecccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCe-------eEEEEeCCCCCeEEEEEccCCCEEEEEeC
Q 008050 277 YLDCTESGDDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPRLQ-------KFSALKGHTERATDVTFSPVSNHVATSSA 348 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~~~-------~~~~l~~h~~~V~~l~~sp~~~~l~s~s~ 348 (579)
.+...+..|...|..++.++.. .++++|+.||+|++||..... ...++......+.++.+.+.++.+++++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 3555666788888888887654 999999999999999986421 22333445778999999999999999999
Q ss_pred CCcEEEEeCCCCee--------EEEeccc-CCeEEE-EEec-CC-CEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCe
Q 008050 349 DRTARLWNTDGSLL--------NTFQGHL-DRLARM-AFHP-SG-KYLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSV 414 (579)
Q Consensus 349 dg~I~iwd~~~~~~--------~~~~~h~-~~I~~l-~~sp-~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V 414 (579)
||.|.+.+++.... .....+. +.+.++ +|.. .+ ..|+.+...+.|..||+.........+ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999654211 1111122 222222 2222 22 378888889999999998765444332 334689
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCeEEEEEcCC---CCEEEE-Ee-CCCcEEEEECCCCcee
Q 008050 415 YGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSPN---GYHLAT-GG-EDNTCRIWDLRKRKSL 488 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp~---g~~l~t-gs-~Dg~I~iwDl~~~~~~ 488 (579)
++++.+|.++++++|+..|.+.+||+|-+..+..+. .+..+|..++.++- ....++ |+ ..+.|.+|++.+|.+.
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999998887775 34567888877762 234444 44 5788999999998776
Q ss_pred EEEeCCCC-------------------CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE------------------
Q 008050 489 YVIPAHSN-------------------LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV------------------ 531 (579)
Q Consensus 489 ~~~~~~~~-------------------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~------------------ 531 (579)
..+-...+ ......+. +.+.++.+|+.|+.|+.||.......
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 66543210 01112222 24678899999999999996432110
Q ss_pred ------------------------------EEe--------cCCCCcEEEEEEcCCC-CEEEEEEcCCeEEEEE
Q 008050 532 ------------------------------KSL--------SGHEAKVTSLDIHPDE-QSIATVSHDRWIKLWS 566 (579)
Q Consensus 532 ------------------------------~~l--------~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~ 566 (579)
..+ ..|...|+++++.... .+|++++.||.|+||.
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1366778888876543 4789999999999994
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=3e-15 Score=145.52 Aligned_cols=236 Identities=15% Similarity=0.206 Sum_probs=180.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-eEEEecccCCeEEEEEecCCCEEEEEeCC--CeEEEEECCCCcEE
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSL-LNTFQGHLDRLARMAFHPSGKYLGTTSFD--KTWRLWDVDTGVEL 404 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~h~~~I~~l~~sp~~~~l~s~s~d--g~I~lwd~~~~~~~ 404 (579)
...+..+.|+.+...|..|+.|| .++|+.+... ..........|..+-|+ ..+++..+.+ ..+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34577788999999999999988 4677643311 11111122234444454 5566666655 45999999888777
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec---CCCCeEEEEEcCCCCEEEEEe--CCCcEEE
Q 008050 405 LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG---HVKPVLGISFSPNGYHLATGG--EDNTCRI 479 (579)
Q Consensus 405 ~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~~~~I~si~~sp~g~~l~tgs--~Dg~I~i 479 (579)
... .....|.++.++.+ .|+++-.+ .|+|||+++.+.+.++.. +...+.+++++..+.+|+.-+ ..|.|.|
T Consensus 82 Ce~-~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEI-FFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEE-ecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 765 34567989998765 45555444 499999999999887753 444566677777677887644 5689999
Q ss_pred EECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE-EEEEECCCCeEEEEecCCC--CcEEEEEEcCCCCEEEEE
Q 008050 480 WDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKLVKSLSGHE--AKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 480 wDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~-I~iwd~~~~~~~~~l~~h~--~~V~~l~~s~dg~~L~s~ 556 (579)
||+.+.+.+..+..|.+.+.+++|+++ |.+|+++|..|+ |+||.+.+|+.+..|+... ..|.+++|++++++|++.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 999999999999999999999999996 899999999887 7999999999999997433 458899999999999999
Q ss_pred EcCCeEEEEEcCCCC
Q 008050 557 SHDRWIKLWSTRNKG 571 (579)
Q Consensus 557 s~Dg~I~iW~~~~~~ 571 (579)
|..++|.||.+....
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 999999999997644
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=5.3e-15 Score=152.40 Aligned_cols=238 Identities=13% Similarity=0.162 Sum_probs=162.1
Q ss_pred CCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC-Cee--EEEEeCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCC-
Q 008050 286 DRPLSGCSYSHDGNLLATSS-LSGVVKIWSMPR-LQK--FSALKGHTERATDVTFSPVSNHVATSSA-DRTARLWNTDG- 359 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs-~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~~~- 359 (579)
.+....++++|++++|++++ .++.|.+|++.. +.. ..... ..+....++|+|++++|++++. ++.|.+|+++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34577889999999987765 478899999863 332 22222 3345778999999999888765 78999999652
Q ss_pred -C---eeEEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEE------EecCCCCeEEEEEcCCCCEEEE
Q 008050 360 -S---LLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELLL------QEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 360 -~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~------~~~~~~~V~~l~~spdg~~l~s 428 (579)
. .+..+. +......++++|+++++++++ .++.|.+||+.+...+.. ..........+.|+|+|+++++
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence 1 222222 233457788999999887655 469999999976432211 1112344678999999999888
Q ss_pred EeC-CCeEEEEeCCC--Ce--EEEEEecC------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eeEEEe
Q 008050 429 CGL-DALARVWDLRT--GR--SILALEGH------VKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRK----SLYVIP 492 (579)
Q Consensus 429 g~~-dg~I~iwd~~~--~~--~~~~~~~~------~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~----~~~~~~ 492 (579)
+.. ++.|.+||+.. ++ .+..+... ......+.|+|+|++|+++. .++.|.+|++.... .+..+.
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 776 89999999973 32 33333221 11234688999999999986 47899999986533 222222
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
.. .....+.|++++..++++...+++|.+|++.
T Consensus 272 ~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 272 TE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred cc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 22 2345789999844444455558999999864
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-15 Score=139.96 Aligned_cols=229 Identities=17% Similarity=0.241 Sum_probs=175.4
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCC-----------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDG-----------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV 398 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-----------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~ 398 (579)
.|.+-+|+|.+++|+.|..+|.|.++.++. ..+..+++|.++|..++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 456668899999999999999999998532 2445568999999999999 45666665 599999877
Q ss_pred CCCcE------EE-EE------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCC
Q 008050 399 DTGVE------LL-LQ------EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG 465 (579)
Q Consensus 399 ~~~~~------~~-~~------~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g 465 (579)
+.... +. .. ...--.|+++...|..+-++.++.|+.++.||+.+|+...++++|..-|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54322 10 00 0112468899999987777777789999999999999999999999999999985555
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeCC----------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec
Q 008050 466 YHLATGGEDNTCRIWDLRKRKSLYVIPAH----------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 466 ~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~----------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 535 (579)
..+++|++||+++|||+++++++..+... ...|-+++.+ ..+|++|+ ...+.+|+++..++...+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc---CceEEecC-CCceeEEeccCCCceEEEe
Confidence 57999999999999999999999887542 1235555544 45777665 4569999999988777765
Q ss_pred CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 536 GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 536 ~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
-.+.|..+.|.. +.++++|..+.|.-|.++
T Consensus 245 -ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 -IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred -cccceeEeeeec--ceEEEeccccceeeeeec
Confidence 245577888863 467778777778888764
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.7e-16 Score=152.58 Aligned_cols=195 Identities=19% Similarity=0.356 Sum_probs=159.3
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeEEEE--EecCC-CCe
Q 008050 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP--DGSLAASCGLDALARVWDLRTGRSILA--LEGHV-KPV 456 (579)
Q Consensus 382 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp--dg~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~~-~~I 456 (579)
..++++...|.|++||..+++.+..+.++...++.+.|.. ....+.+|+.||+|++||+|+...... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688999999999999999999999999999999999987 456899999999999999998765443 34444 456
Q ss_pred EEEEEcCCCCEEEEEe----CCCcEEEEECCCCce-eEE-EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-
Q 008050 457 LGISFSPNGYHLATGG----EDNTCRIWDLRKRKS-LYV-IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK- 529 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs----~Dg~I~iwDl~~~~~-~~~-~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~- 529 (579)
.+++..-+++.+++|+ .+-.|.+||+|..+. +.. +..|...|++++|+|.+.++|++||.||.|.+||++.-.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 6777776788888886 466899999998776 444 357999999999999999999999999999999987542
Q ss_pred --EEEEecCCCCcEEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 530 --LVKSLSGHEAKVTSLDIHPDE-QSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 530 --~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
.+.....|.+.|..+.|..++ +.|.+-+..+++.+|+++.+..+..+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 222233577889999998876 45888889999999999988755443
No 198
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=9.8e-17 Score=164.29 Aligned_cols=234 Identities=21% Similarity=0.363 Sum_probs=176.8
Q ss_pred EcCCCCEEEE--EecCCeEEEEeCCCCeeEE--EEe--CCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-------
Q 008050 294 YSHDGNLLAT--SSLSGVVKIWSMPRLQKFS--ALK--GHTERATDVTFSP-VSNHVATSSADRTARLWNTDG------- 359 (579)
Q Consensus 294 ~spdg~~lat--gs~dg~I~iwd~~~~~~~~--~l~--~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~~------- 359 (579)
|+.+..++++ .+..|.|-||++.....+- .+. .....|+.+.|.| |...|++++.||.|++|.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4455566665 4567999999987532211 111 1456799999999 567899999999999999532
Q ss_pred -CeeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 360 -SLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 360 -~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
.....+..|...|+++.|||- .+.|+++++|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+++.+.||+|++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 345678899999999999994 468999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeE-EEEEecCC-CCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCC--ceeEEEeCCCC-CeEEEEEeeCCC
Q 008050 438 WDLRTGRS-ILALEGHV-KPVLGISFSPNGYHLATGGEDN----TCRIWDLRKR--KSLYVIPAHSN-LISQVKFEPQEG 508 (579)
Q Consensus 438 wd~~~~~~-~~~~~~~~-~~I~si~~sp~g~~l~tgs~Dg----~I~iwDl~~~--~~~~~~~~~~~-~V~~v~~sp~~~ 508 (579)
|+.+++.. +..-++.. ..--.|.|.-+|+++++.+.|. .|.+||..+. ..+++...... .+.--.++++.+
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~ 826 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSN 826 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCc
Confidence 99988753 33332221 2234577888999998887664 6888987653 34444322111 122234667778
Q ss_pred eEEEEEECCCEEEEEECCC
Q 008050 509 YFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~ 527 (579)
.+|++|-.|..|++|.+-.
T Consensus 827 ~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 827 VLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred eEEEecCCCceEEEEEecC
Confidence 8999999999999998654
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6e-16 Score=164.92 Aligned_cols=216 Identities=18% Similarity=0.246 Sum_probs=160.3
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCee--EEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLS---GVVKIWSMPRLQK--FSALKGHTERATDVTFSPVSNHVATSS-ADRTARLW 355 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~d---g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iw 355 (579)
+..|...+.+.+|||||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|+|+.|+.++ .+|.+.||
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEE
Confidence 34567789999999999999988754 3699999988754 3333333 45789999999888765 67866555
Q ss_pred --eCCCCeeEEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 356 --NTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 356 --d~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
|..+.....+..+...+....|+|+|+.|+.++ .+|...+|++... ...... .+.. ++..|+|||+.|+.++.
T Consensus 276 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 276 VMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 666666777777777888999999999877655 5677888876432 122222 3333 46789999999988877
Q ss_pred CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceeEEEeCCCCCeEEEEEeeC
Q 008050 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL--RKRKSLYVIPAHSNLISQVKFEPQ 506 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl--~~~~~~~~~~~~~~~V~~v~~sp~ 506 (579)
++ +.+||+.+++.......+ ...++.|+|+|++|++++.+|.+.+|++ .++..+..+..|.+.+...+|+|.
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 65 556999988754333222 2456889999999999999998888875 357888888888888888999874
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.8e-15 Score=158.29 Aligned_cols=291 Identities=21% Similarity=0.315 Sum_probs=213.1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCC
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS---NHVATSSADRTARLWNTDG 359 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~---~~l~s~s~dg~I~iwd~~~ 359 (579)
.|-...-..-.||+|+++++... +..|+||...++.++..+.+|..++..+.+.+.. .++++++.+|.|++||...
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 33344444557999999988766 6799999999999999999999999999998865 4678999999999999543
Q ss_pred -CeeEEEecccCC----------------------------------------------------------eEEEEEecC
Q 008050 360 -SLLNTFQGHLDR----------------------------------------------------------LARMAFHPS 380 (579)
Q Consensus 360 -~~~~~~~~h~~~----------------------------------------------------------I~~l~~sp~ 380 (579)
..+.++..+... -.++.+++.
T Consensus 92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 333332211000 012223333
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEE----EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEecC
Q 008050 381 GKYLGTTSFDKTWRLWDVDTGVELLL----QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT----GRSILALEGH 452 (579)
Q Consensus 381 ~~~l~s~s~dg~I~lwd~~~~~~~~~----~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~----~~~~~~~~~~ 452 (579)
|.+.+ ...+..+.+|+..++..... ...|...++|.++||+++++++|..||.|.+|.--. ......+.-|
T Consensus 172 ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 172 GEFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred ceEEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 32222 22344566777766442111 124556689999999999999999999999995322 1244567778
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE
Q 008050 453 VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK 532 (579)
Q Consensus 453 ~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~ 532 (579)
...|+++.|+++|.+|++|+..|.+.+|.+.+++ ...++--.+.|..+.++|+ +.+.+....|+.|.+....+.....
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCC-CCeEEEEecCceEEEEeccchhhhh
Confidence 9999999999999999999999999999999888 4445555788999999998 5556666779999999876665444
Q ss_pred EecCC-----------CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 533 SLSGH-----------EAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 533 ~l~~h-----------~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
++.+- .+-.+.++++|.-+.++-.+..|.|.+||+-+...+..++
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 44331 3346788999977778888999999999998887776554
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=143.42 Aligned_cols=241 Identities=21% Similarity=0.291 Sum_probs=182.7
Q ss_pred CCeEEEEEcc---CCCEEEEEeC----CCcEEEEeCCC--CeeEE--EecccCCeEEEEEecCCC-----EEEEEeCCCe
Q 008050 329 ERATDVTFSP---VSNHVATSSA----DRTARLWNTDG--SLLNT--FQGHLDRLARMAFHPSGK-----YLGTTSFDKT 392 (579)
Q Consensus 329 ~~V~~l~~sp---~~~~l~s~s~----dg~I~iwd~~~--~~~~~--~~~h~~~I~~l~~sp~~~-----~l~s~s~dg~ 392 (579)
-.+.++.|+. .+.+|+.|+. .+.|.|..++. ..+.. -..|..+++.+.|.|+.. +|++ .+..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT--s~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT--SSDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc--ccCe
Confidence 4677888884 2346888875 46677766432 22211 136888999999999874 3443 4568
Q ss_pred EEEEECCCCc--EE--E-----EEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCCeEEE
Q 008050 393 WRLWDVDTGV--EL--L-----LQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGR---SILALEGHVKPVLGI 459 (579)
Q Consensus 393 I~lwd~~~~~--~~--~-----~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~---~~~~~~~~~~~I~si 459 (579)
+++|.+.... .. . ....+..+++++.|+. +-+++.+++-|-+..|||+.++. ....+-.|.+.|..|
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 9999987421 11 0 1123556899999997 67799999999999999999863 356678899999999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEe---CCCCCeEEEEEeeCCCeEEEEEECC-CEEEEEECCC-CeEEEE
Q 008050 460 SFSPNG-YHLATGGEDNTCRIWDLRKRKSLYVIP---AHSNLISQVKFEPQEGYFLVTGSYD-MTVKVWSGRD-FKLVKS 533 (579)
Q Consensus 460 ~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~---~~~~~V~~v~~sp~~~~~l~sgs~d-g~I~iwd~~~-~~~~~~ 533 (579)
+|...+ ..|++.+.||.+++||+|....-..+. ....+...++|++...+|+++-..| ..|.|.|++. +..+..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999855 578899999999999999865443332 2246788899999888888876654 5799999986 568899
Q ss_pred ecCCCCcEEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCC
Q 008050 534 LSGHEAKVTSLDIHPD-EQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 534 l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+.+|.+.|+.++|.|. ...|+|+|.|..+-|||+...-
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 9999999999999995 5679999999999999997643
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.1e-15 Score=149.02 Aligned_cols=195 Identities=26% Similarity=0.356 Sum_probs=156.5
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec-
Q 008050 373 ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG- 451 (579)
Q Consensus 373 ~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~- 451 (579)
..++|+.+|..|++++.||++|+|+..+...+.....|.+.|.++.|+|||.+|++-+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999988877777777899999999999999999999999 999999999977665542
Q ss_pred -CCCCeEEEEEcCCC---C--EEEEEeCCCcEEEEECCCCce-----eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 452 -HVKPVLGISFSPNG---Y--HLATGGEDNTCRIWDLRKRKS-----LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 452 -~~~~I~si~~sp~g---~--~l~tgs~Dg~I~iwDl~~~~~-----~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
.......+.|+.++ . .++.....+.|+.||+...+. ..+.......|+++..+.+ |.+++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD-GKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC-CcEEEEeccCCcE
Confidence 22335667787766 2 223333455677766543221 1122223457999999996 8999999999999
Q ss_pred EEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 521 KVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 521 ~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
-|++..+.+.++-. +.|..-|+.+.|+||.+++++.+.|..+.+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999998888766 47999999999999999999999999998888754
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=3.8e-16 Score=157.53 Aligned_cols=209 Identities=15% Similarity=0.239 Sum_probs=173.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAF 377 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~ 377 (579)
...|+.++.||.+.|.+ ..++....+..|.+.|.+-.|+++|.-|++++.||.|++|...|-...++......|.|++|
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence 35778888899999987 45666677789999999999999999999999999999999888777777778889999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeE
Q 008050 378 HPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVL 457 (579)
Q Consensus 378 sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~ 457 (579)
.|+.+.++.+ ..+.+.+=-+.....+.....|.+-|.++.|++..+++++||.|-..+|||- .|..+..-..|..+|+
T Consensus 154 ~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcccee
Confidence 9998866654 3566777777777777788899999999999999999999999999999995 5778888888999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 458 GISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 458 si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
+++|+|+ ..++.++. +++++ -....+.|..++|++| |..+++|+..|.+.+=
T Consensus 232 Sva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~D-GTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSAD-GTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCC-CceeeccccCceEEEe
Confidence 9999999 56666664 34441 1234567889999997 7788888888876553
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=148.71 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=182.4
Q ss_pred EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-------CeeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEE
Q 008050 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-------SLLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWR 394 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~ 394 (579)
.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. +++.... .|...|.|+.|...+.++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3568999999999999999999999999999999643 3333332 3558999999999999999999999999
Q ss_pred EEECCCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-EE--EEEecCCCCeEEEEEcC-CCCEE
Q 008050 395 LWDVDTGVELLLQEG--HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR-SI--LALEGHVKPVLGISFSP-NGYHL 468 (579)
Q Consensus 395 lwd~~~~~~~~~~~~--~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~-~~--~~~~~~~~~I~si~~sp-~g~~l 468 (579)
+.|+++.+.+.++.. ..+.|+.+..+|-.+.|++.+.+|.|.+||.+... .+ .......+..+++.|+| ...+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999998887742 23589999999998999999999999999998765 22 22233445678899999 45788
Q ss_pred EEEeCCCcEEEEECCCCc-eeEEEeC------CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE-EEecCCC--
Q 008050 469 ATGGEDNTCRIWDLRKRK-SLYVIPA------HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV-KSLSGHE-- 538 (579)
Q Consensus 469 ~tgs~Dg~I~iwDl~~~~-~~~~~~~------~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~-~~l~~h~-- 538 (579)
++.+..+-+.+||.+... .++.... ....-.++.|++.+ ..|++--....-.+||+.+..+. ..+. |.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~ 288 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPN 288 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEecc-CCCC
Confidence 899988999999998643 2222211 12223567899974 44444444444566787764433 3332 22
Q ss_pred -----CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 539 -----AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 539 -----~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
..+.+++|..|. .+++|+.+-.|++|.+...
T Consensus 289 GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred cceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 236677887554 4999999999999998653
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=2.7e-17 Score=173.25 Aligned_cols=247 Identities=25% Similarity=0.399 Sum_probs=199.9
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
+.+..+.+|...|+|+.|...|.++++|+.|..++||..+ +.++....||.+.|+.++.+.++.++++++.|..|++|-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3445567899999999999999999999999999999954 468889999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE-----EecCCCCeEEEEEcCCCCEEEEEe
Q 008050 398 VDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA-----LEGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~-----~~~~~~~I~si~~sp~g~~l~tgs 472 (579)
+..+..+.++.+|.+.|++++|+|-. +.+.||++++||.+-.-.+.. +. ...-+.++.|..++.-+++|+
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceeeeecccccccccccc
Confidence 99999999999999999999999964 678899999999982111111 11 224477888888999999999
Q ss_pred CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCE
Q 008050 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS 552 (579)
Q Consensus 473 ~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 552 (579)
.|+.-..|.+.... .+...+.-+.++.+...+.++.-.+..+++|++.+|.+++.+.+|...+..+.++|-+..
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 99998888764321 122222222233233456777778889999999999999999999999999999996554
Q ss_pred -EEEEEcCCeEEEEEcCCCCccccc
Q 008050 553 -IATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 553 -L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
..+++.||...|||+..+-.+..+
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceee
Confidence 568899999999999877655443
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=4.2e-15 Score=162.80 Aligned_cols=256 Identities=18% Similarity=0.188 Sum_probs=188.8
Q ss_pred CCeeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCC---C-----CeeEEEecccCCeEEEEEecCCCEEEEE
Q 008050 317 RLQKFSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTD---G-----SLLNTFQGHLDRLARMAFHPSGKYLGTT 387 (579)
Q Consensus 317 ~~~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~---~-----~~~~~~~~h~~~I~~l~~sp~~~~l~s~ 387 (579)
.|..+..+..|...|..++.++.. .+|++||.||+|++|+.. + +...++....+++.++.+.+.++.++++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 567778888899999999988765 999999999999999932 2 2233445567889999999999999999
Q ss_pred eCCCeEEEEECCCC--cE-----EEEEecCC-CCeEEE-EEcC-CCC-EEEEEeCCCeEEEEeCCCCeEEEEEe--cCCC
Q 008050 388 SFDKTWRLWDVDTG--VE-----LLLQEGHS-RSVYGI-AFHP-DGS-LAASCGLDALARVWDLRTGRSILALE--GHVK 454 (579)
Q Consensus 388 s~dg~I~lwd~~~~--~~-----~~~~~~~~-~~V~~l-~~sp-dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~ 454 (579)
+.||.|.+.+++.. .. ......+. +.+.++ +|.. .+. .++.+...+.|..||+++......++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999998762 11 11111222 233333 3333 334 78888999999999999877665543 4557
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-CCCCeEEEEEeeCCC--eEEEEEE--CCCEEEEEECCCCe
Q 008050 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEG--YFLVTGS--YDMTVKVWSGRDFK 529 (579)
Q Consensus 455 ~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~~~~V~~v~~sp~~~--~~l~sgs--~dg~I~iwd~~~~~ 529 (579)
.|++++.+|.+.++++|+..|.+.+||+|-+.++..+.. +...+..+..++..+ .+.++++ ..+.|.+|++.+|.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 799999999999999999999999999998888877653 446788888777544 4454444 47889999999887
Q ss_pred EEEEecCC-------------------CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 530 LVKSLSGH-------------------EAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 530 ~~~~l~~h-------------------~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
+-..+... .-....+.+...+.++++|+.|+.|+.||......
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 65555322 01122334444567899999999999999876543
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=9.4e-17 Score=159.67 Aligned_cols=233 Identities=15% Similarity=0.271 Sum_probs=196.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ 407 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~ 407 (579)
...-..+.++.+|.+|+.|+..|.|..+|.....+..-..-...|.++.|..+.++|+++ ....+++||-. |..+..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl 206 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL 206 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh
Confidence 334577899999999999999999999996666555555566778899998888777766 56789999974 5555555
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 008050 408 EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS 487 (579)
Q Consensus 408 ~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~ 487 (579)
..| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|.-....+
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 444 4688999999998999999999999999999999999998889999999999888999999999999999999999
Q ss_pred eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 488 LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 488 ~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
+..+..|.++|.++++.+. |+|+++.+.|..++|||+++...+.++.. ......++||..| ++.+|....|.||.=
T Consensus 286 LvKiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred HHHHHhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 9999999999999999995 99999999999999999999887777754 3457788898665 444555667999964
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=7.5e-15 Score=140.23 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=181.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-C
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDG----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-G 401 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-~ 401 (579)
-..+|+|.+|++++..++++..+..|.||...+ +...+++.|...|+.++|.|..+.|++++.|..-++|.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 457899999999999999999999999999544 45788899999999999999999999999999999999843 3
Q ss_pred --cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE----EEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 402 --VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL----ALEGHVKPVLGISFSPNGYHLATGGEDN 475 (579)
Q Consensus 402 --~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~----~~~~~~~~I~si~~sp~g~~l~tgs~Dg 475 (579)
+....+..++...+++.|+|.++.|++|+.-..|.||-+.....-. .-+.+...|++++|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3444566788999999999999999999999999999876544321 2234567799999999999999999999
Q ss_pred cEEEEECC-----C-------------CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-EEEEecC
Q 008050 476 TCRIWDLR-----K-------------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-LVKSLSG 536 (579)
Q Consensus 476 ~I~iwDl~-----~-------------~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~ 536 (579)
.++||..- . |..+..+....+.+..+.|+++ |..|+-.+.|+.+.+-|..... .+..+..
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCCchhccchhh
Confidence 99999632 1 2233444455678999999996 7788888999999999976654 3444433
Q ss_pred CCCcEEEEEEcCCCCEEEEEEcC
Q 008050 537 HEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 537 h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
..-+..++.|-.+. .++.++.|
T Consensus 248 ~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 248 AQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ccCCceeeEeecCC-ceeecCCC
Confidence 33566777776443 34444455
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=7.2e-15 Score=140.55 Aligned_cols=273 Identities=20% Similarity=0.312 Sum_probs=194.0
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCC-CCeeEEEecc
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADRTARLWNTD-GSLLNTFQGH 368 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~~-~~~~~~~~~h 368 (579)
-|+|||+|+++|+.+.- .+.|-|..+.+..+.+. .-+.|..+.|..+..+++.+ ..++.|.+|++. .+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 47899999999999855 88888888776554433 24578889999888776554 567899999954 4556677778
Q ss_pred cCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------------
Q 008050 369 LDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD--------------- 432 (579)
Q Consensus 369 ~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d--------------- 432 (579)
...+..++|+|+|+ .|.+...+-.|.+|.+.+.+...... .+..+..++|++||++.+.++.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 88999999999996 56667789999999999877665542 23456888999999987776532
Q ss_pred ---------------------CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---
Q 008050 433 ---------------------ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL--- 488 (579)
Q Consensus 433 ---------------------g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~--- 488 (579)
+.+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.|+.++|.+--+.+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123344321111111221 1235889999999999999999999988653221100
Q ss_pred ---------------------------------------------------------EEEe------CCCCCeEEEEEee
Q 008050 489 ---------------------------------------------------------YVIP------AHSNLISQVKFEP 505 (579)
Q Consensus 489 ---------------------------------------------------------~~~~------~~~~~V~~v~~sp 505 (579)
..++ .....+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0000 0112356788998
Q ss_pred CCCeEEEEEEC--CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 506 QEGYFLVTGSY--DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 506 ~~~~~l~sgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
| ..|+++-.. -+.+.+||+++.++...+. ...+|....|+|....|+.+.....+++|....
T Consensus 329 D-s~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 329 D-STYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred C-ceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 6 677776543 3679999999887665554 456799999999888888887778899998764
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1e-13 Score=143.67 Aligned_cols=286 Identities=17% Similarity=0.210 Sum_probs=192.0
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCeeEEEe
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTD-GSLLNTFQ 366 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~-~~~~~~~~ 366 (579)
-..+.|++||+++++++.||.|.++|+.+.+.+.+++... ...+++++++|++++++. ..+.+.++|.. .+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 3457799999999999999999999999999999988543 568899999999988775 57999999954 45566554
Q ss_pred c-------ccCCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEE-eCCCeEE
Q 008050 367 G-------HLDRLARMAFHPSGKYLGTTSFD-KTWRLWDVDTGVELL-LQEGHSRSVYGIAFHPDGSLAASC-GLDALAR 436 (579)
Q Consensus 367 ~-------h~~~I~~l~~sp~~~~l~s~s~d-g~I~lwd~~~~~~~~-~~~~~~~~V~~l~~spdg~~l~sg-~~dg~I~ 436 (579)
. ...++..+..++....++..-.| +.|.+.|......+. .............|+|++++++.+ ..++.|-
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 3 23467788888888866666554 889999987654433 233345667889999999987664 5677999
Q ss_pred EEeCCCCeEEEEEec----CCCCeEEEE-------Ec--CCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEE
Q 008050 437 VWDLRTGRSILALEG----HVKPVLGIS-------FS--PNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKF 503 (579)
Q Consensus 437 iwd~~~~~~~~~~~~----~~~~I~si~-------~s--p~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~ 503 (579)
++|..+++.+..+.. |..++..+- |. ..+...++.-..+.+.+||....+.+..+....+. ..+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 999999988776542 333333221 21 12333333333446778999999999999987666 66888
Q ss_pred eeCCCeEEEEE----ECCCEEEEEECCCCeEEEEecCC-CCcEEEEEEcCCCCEEEEEEcC--CeEEEEEcCCCCccccc
Q 008050 504 EPQEGYFLVTG----SYDMTVKVWSGRDFKLVKSLSGH-EAKVTSLDIHPDEQSIATVSHD--RWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 504 sp~~~~~l~sg----s~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s~D--g~I~iW~~~~~~~~~~~ 576 (579)
+|+ +.++++. ...+.|.++|..+.+.+..+... ...+..+.|+++|+++..+.++ |.|.+||..+.+....+
T Consensus 277 hP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 277 HPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp -TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 997 5566655 45689999999999888887532 2359999999999987666544 36999999998877665
Q ss_pred c
Q 008050 577 D 577 (579)
Q Consensus 577 ~ 577 (579)
.
T Consensus 356 ~ 356 (369)
T PF02239_consen 356 P 356 (369)
T ss_dssp E
T ss_pred E
Confidence 4
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.5e-14 Score=149.65 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=163.7
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEE
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA---DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL 384 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l 384 (579)
..|.+||...... ..+..+...+.+.+|+|+|+.|+..+. +..|.+|++.+.....+....+.+....|+|+|+.|
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 4788888875543 344556778999999999999887653 357999997765555554444555678999999988
Q ss_pred EEE-eCCC--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCeEEEEEecCCCCeEE
Q 008050 385 GTT-SFDK--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD-A--LARVWDLRTGRSILALEGHVKPVLG 458 (579)
Q Consensus 385 ~s~-s~dg--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~I~s 458 (579)
+.. +.+| .|++||+.++....... +...+....|+|||+.|+..+.+ | .|.++|+.++... .+..+.....+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 765 4444 59999998887655443 34467789999999988776654 4 4555577666443 33334444667
Q ss_pred EEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC---EEEEEECCCCeEEE
Q 008050 459 ISFSPNGYHLATGGED---NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM---TVKVWSGRDFKLVK 532 (579)
Q Consensus 459 i~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg---~I~iwd~~~~~~~~ 532 (579)
..|+|+|++|+..+.+ ..|.+||+.++... .+... .......|+|+ +.+|+.++.++ .+.++++ ++....
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpD-G~~i~~~s~~~~~~~l~~~~~-~G~~~~ 411 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPN-GTMVIYSSSQGMGSVLNLVST-DGRFKA 411 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCC-CCEEEEEEcCCCceEEEEEEC-CCCCeE
Confidence 8999999999876643 35889999877643 33322 22346789997 56666666554 3677787 466666
Q ss_pred EecCCCCcEEEEEEcC
Q 008050 533 SLSGHEAKVTSLDIHP 548 (579)
Q Consensus 533 ~l~~h~~~V~~l~~s~ 548 (579)
.+.+|.+.+...+|+|
T Consensus 412 ~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATDGQVKFPAWSP 427 (429)
T ss_pred ECccCCCCcCCcccCC
Confidence 7778888899999987
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-15 Score=150.95 Aligned_cols=193 Identities=23% Similarity=0.357 Sum_probs=153.8
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eeEEEe--
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS-LLNTFQ-- 366 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-~~~~~~-- 366 (579)
.+++|+.+|..|++|+.||.++||++++...+.....|...|.++.|+|||++|++.+.| ..+||+.+.. .+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999999999888888999999999999999999999999 9999996543 333332
Q ss_pred cccCCeEEEEEecCC---CEE--EEEeCCCeEEEEECCCCcE-----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008050 367 GHLDRLARMAFHPSG---KYL--GTTSFDKTWRLWDVDTGVE-----LLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 367 ~h~~~I~~l~~sp~~---~~l--~s~s~dg~I~lwd~~~~~~-----~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
........+.|+.++ .++ +.....+.|+.||+..... ..........|++++.+.+|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 233455677788776 332 3333456677777643322 111112345799999999999999999999999
Q ss_pred EEeCCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 008050 437 VWDLRTGRSILAL-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 437 iwd~~~~~~~~~~-~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~ 483 (579)
|++..+.+.++.. +.|...|+.+.|+|+.+++++-+.|..+.|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988877665 5788999999999999999999999888888764
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=6.3e-14 Score=134.18 Aligned_cols=270 Identities=17% Similarity=0.232 Sum_probs=196.0
Q ss_pred CeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCeeEEE
Q 008050 288 PLSGCSYSHDGNLLATS-SLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH-VATSSADRTARLWNTDGSLLNTF 365 (579)
Q Consensus 288 ~I~~~~~spdg~~latg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~-l~s~s~dg~I~iwd~~~~~~~~~ 365 (579)
.|.-+.|..|.-+++++ ..++.|.+|++...+-...+.....++.+++|+|+|+. |.+...+-.|.+|++.++....+
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 45567788887766655 56889999999998888888888999999999999965 55667789999999988888777
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCC------------------------------------CeEEEEECCCCcEEEEEec
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFD------------------------------------KTWRLWDVDTGVELLLQEG 409 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~d------------------------------------g~I~lwd~~~~~~~~~~~~ 409 (579)
...+..+..++|+++|++.+.++.- ..+.+||.--.-.+..+ .
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e 208 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-E 208 (447)
T ss_pred cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-e
Confidence 7777788999999999988876542 23445543222222222 2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEE-------------------------------------------
Q 008050 410 HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI------------------------------------------- 446 (579)
Q Consensus 410 ~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~------------------------------------------- 446 (579)
.+-.+..+.|+|.+++|++|+.|+.+++.+--+.+..
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 2346888999999999999999999987552111110
Q ss_pred -----------------EEEe------cCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEeCCCCCeEEE
Q 008050 447 -----------------LALE------GHVKPVLGISFSPNGYHLATGGE--DNTCRIWDLRKRKSLYVIPAHSNLISQV 501 (579)
Q Consensus 447 -----------------~~~~------~~~~~I~si~~sp~g~~l~tgs~--Dg~I~iwDl~~~~~~~~~~~~~~~V~~v 501 (579)
..++ .....+.-++|++|..++++-.. -+.+-+||+++.+....+ ....+|...
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf 367 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAF 367 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEE
Confidence 0000 01223667899999999888653 357999999876654433 345789999
Q ss_pred EEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCe
Q 008050 502 KFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRW 561 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 561 (579)
.|+|... .|+.+.....+++|.......+..- +..-.|.+++|..+|..++.++.|..
T Consensus 368 ~WdP~~p-rL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 368 EWDPGRP-RLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EeCCCCc-eEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999644 4555555667999997765555443 33456999999999999999998863
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=6e-14 Score=135.96 Aligned_cols=277 Identities=19% Similarity=0.265 Sum_probs=187.5
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-CCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe---
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-HTERATDVTFSPVSN-HVATSSADRTARLWNTDGSL--- 361 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~--- 361 (579)
..+..++|++.-..++++..|-.|++|+-.. .....++. ....|+|++|-|.+. -|++|+. +-|.+|..+...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3467789999888889999999999999766 44444443 456899999999654 5666665 559999843211
Q ss_pred ------------eEEEecccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 362 ------------LNTFQGHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 362 ------------~~~~~~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
+....+| ..|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1122234 68999999999999999887 478999999999887776555677889999999999999
Q ss_pred EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------cee---EEE--
Q 008050 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR------------KSL---YVI-- 491 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~------------~~~---~~~-- 491 (579)
++-|+..++|...............+.|...+|+|+|.+|+..+. |.-++|.+.-. +.+ ..+
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 999999999965544333333334457999999999987766543 33344443210 000 001
Q ss_pred ---eCC----CCCeEEEEEeeCCCeEEEEEECCC--------EEEEEECCCCeEEEEe-cC--CCCcEEEEEEcC---CC
Q 008050 492 ---PAH----SNLISQVKFEPQEGYFLVTGSYDM--------TVKVWSGRDFKLVKSL-SG--HEAKVTSLDIHP---DE 550 (579)
Q Consensus 492 ---~~~----~~~V~~v~~sp~~~~~l~sgs~dg--------~I~iwd~~~~~~~~~l-~~--h~~~V~~l~~s~---dg 550 (579)
... .+...+++|+|. |.+|++....+ .|.+||.+..-.+.-. .+ ......-++|++ +|
T Consensus 335 ~ti~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 111 456889999996 77777765433 3667776544332221 11 011133445544 56
Q ss_pred CEEEEEEcCCeEEEEEcC
Q 008050 551 QSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~ 568 (579)
.+|..+=..|.|.-|.+.
T Consensus 414 ~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cEEEEEeccCceEeeeeE
Confidence 667666677888777764
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=146.60 Aligned_cols=241 Identities=18% Similarity=0.207 Sum_probs=167.3
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE----EEeCCCCCeEEEEE-----ccCCCEEEEEeCCCcEEEEeCCC
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS----ALKGHTERATDVTF-----SPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~----~l~~h~~~V~~l~~-----sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
+....++-.|++|+..- ...+++|+...+..+. ..........|-.| .+.+--|+.|-.-|.|.+.+...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44445555667766543 3468888876432221 11111122333444 24556688888889999998433
Q ss_pred CeeEEE-----ecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeE--EEEEcCCCCEEEEEeC
Q 008050 360 SLLNTF-----QGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVY--GIAFHPDGSLAASCGL 431 (579)
Q Consensus 360 ~~~~~~-----~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~--~l~~spdg~~l~sg~~ 431 (579)
..+..+ ...+..|+++.|-|.+. .++++-.+|.+++||.+. ....+ +....+++..+.....
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~~~~t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------VCGATAPSYQALKDGDQFAILTS 274 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------cccCCCCcccccCCCCeeEEeee
Confidence 322221 12347899999998554 677777899999998721 11111 1223345555554332
Q ss_pred CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEE
Q 008050 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l 511 (579)
.+. .+..++..+....+.|+.++|++||++|++.+.||.++|||..+.+.+..++.--+...|++|+|| +.||
T Consensus 275 ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD-GKyI 347 (636)
T KOG2394|consen 275 KSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD-GKYI 347 (636)
T ss_pred ecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC-ccEE
Confidence 111 222455555555668999999999999999999999999999988887777766678999999997 8999
Q ss_pred EEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc
Q 008050 512 VTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 512 ~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
++|+.|.-|.||.+...+.+..-.+|.+.|+.++|.
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999999999998
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.5e-14 Score=140.06 Aligned_cols=259 Identities=16% Similarity=0.227 Sum_probs=194.3
Q ss_pred CCCeeEEEEcCCC--CEEEEEecCCeEEEEeCCCCeeEEE------EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 286 DRPLSGCSYSHDG--NLLATSSLSGVVKIWSMPRLQKFSA------LKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 286 ~~~I~~~~~spdg--~~latgs~dg~I~iwd~~~~~~~~~------l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
...|++++|.-++ +.|...+.+-.+..+.+........ .......|..+... +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 3456667776554 3454444666777777665544333 23445566666554 467889999999999996
Q ss_pred C-----CCeeEEEecccCCeEEEEEecCCCE-EEEEeCC--CeEEEEECCCCcEEEEEecCC---------CCeEEEEEc
Q 008050 358 D-----GSLLNTFQGHLDRLARMAFHPSGKY-LGTTSFD--KTWRLWDVDTGVELLLQEGHS---------RSVYGIAFH 420 (579)
Q Consensus 358 ~-----~~~~~~~~~h~~~I~~l~~sp~~~~-l~s~s~d--g~I~lwd~~~~~~~~~~~~~~---------~~V~~l~~s 420 (579)
. ...+..+..+ ..+..+.-++...+ +++|+.. ..+.+||+++.+.+..-..-. -.++++.|.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 5 4455555544 44556666665554 5558888 889999999986655433221 236678898
Q ss_pred CC--CCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EeCCCC
Q 008050 421 PD--GSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYV-IPAHSN 496 (579)
Q Consensus 421 pd--g~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~-~~~~~~ 496 (579)
+. ...|++++.-+.+++||.+.+ +++..|.....+|+++...|.|++|++|..-|.+..||++.++.+.. +.+-.+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 87 789999999999999999976 57888888889999999999999999999999999999999998876 788889
Q ss_pred CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCC
Q 008050 497 LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 497 ~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
.|+++..+|. ..++++++-|..|+|+|+.+.+++.... -.+.++++-+.++
T Consensus 292 sirsih~hp~-~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 292 SIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred CcceEEEcCC-CceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 9999999995 7899999999999999999977766553 2345677766543
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=6e-13 Score=127.35 Aligned_cols=276 Identities=13% Similarity=0.155 Sum_probs=192.0
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEE-EeCC------CcEEEEe-CCC
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVAT-SSAD------RTARLWN-TDG 359 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s-~s~d------g~I~iwd-~~~ 359 (579)
...+++|+.|...+++|..+| .+||+++..+....-..+.+.+.-+..--..++|+. ||.+ +.|.||| ...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345589999999999998665 899998875554433333333322222223355543 4433 4799999 555
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEEec--CCCCeEEEEEcCCCCEEEE-EeCCCeE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-GVELLLQEG--HSRSVYGIAFHPDGSLAAS-CGLDALA 435 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-~~~~~~~~~--~~~~V~~l~~spdg~~l~s-g~~dg~I 435 (579)
+.+..+. ...+|.++.+.++ .|++. ..+.|++|.... -+.+..+.. ....+.+++-+.+..+|+. |-.-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 5555554 5678899998854 34443 478899999874 344444432 2334544444444445554 4467999
Q ss_pred EEEeCCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEEeCC--CCCeEEEEEeeCCCeE
Q 008050 436 RVWDLRTGRS--ILALEGHVKPVLGISFSPNGYHLATGGEDNT-CRIWDLRKRKSLYVIPAH--SNLISQVKFEPQEGYF 510 (579)
Q Consensus 436 ~iwd~~~~~~--~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~-I~iwDl~~~~~~~~~~~~--~~~V~~v~~sp~~~~~ 510 (579)
+|-|+...+. -..+..|...|.|++.+-+|..+|++|..|+ |+|||..+|..+..+.-. ...|.+++|+|+ ..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~-~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN-SSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC-ccE
Confidence 9999987665 4778899999999999999999999999997 799999999999988743 356999999996 889
Q ss_pred EEEEECCCEEEEEECCCCe---E---------------------EEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 511 LVTGSYDMTVKVWSGRDFK---L---------------------VKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~---~---------------------~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
|+++|..|+++||.++... . +..+.-..+...-++|..+.+.++..+.||+.+-+.
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 9999999999999876422 1 111222344556677877766777778899876665
Q ss_pred cCC
Q 008050 567 TRN 569 (579)
Q Consensus 567 ~~~ 569 (579)
+..
T Consensus 321 f~~ 323 (346)
T KOG2111|consen 321 FDP 323 (346)
T ss_pred ecc
Confidence 543
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=7.8e-14 Score=148.95 Aligned_cols=235 Identities=14% Similarity=0.075 Sum_probs=162.8
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEE
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL 384 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l 384 (579)
..|.+||... .....+..|...+.+..|+|+|+.|+.++.+ ..|++|++.+.....+....+...+..|+|+|+.|
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 4688999754 4445566677889999999999999888743 46999998776555555555556688999999977
Q ss_pred EE-EeCCC--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCeEEEEEecCCCCeEE
Q 008050 385 GT-TSFDK--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DAL--ARVWDLRTGRSILALEGHVKPVLG 458 (579)
Q Consensus 385 ~s-~s~dg--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg~--I~iwd~~~~~~~~~~~~~~~~I~s 458 (579)
+. .+.+| .|++||+.++..... ..+.......+|+|||+.|+.++. +|. |.++|+.+++... +..+......
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~ 340 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR 340 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence 54 45555 599999988875443 344445567899999998877663 444 6677777665432 2223334557
Q ss_pred EEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC--CCEEEEEECCCCeEEEE
Q 008050 459 ISFSPNGYHLATGGEDN---TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY--DMTVKVWSGRDFKLVKS 533 (579)
Q Consensus 459 i~~sp~g~~l~tgs~Dg---~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~--dg~I~iwd~~~~~~~~~ 533 (579)
.+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|++..++++... .+.|+++++. +.....
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~ 417 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQR 417 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 89999999998876443 6999999877654 333 22344567899984444444433 3468888874 445556
Q ss_pred ecCCCCcEEEEEEcC
Q 008050 534 LSGHEAKVTSLDIHP 548 (579)
Q Consensus 534 l~~h~~~V~~l~~s~ 548 (579)
+..+.+.+...+|+|
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 666666777888876
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.4e-14 Score=149.77 Aligned_cols=236 Identities=16% Similarity=0.094 Sum_probs=157.8
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEE
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL 384 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l 384 (579)
..|.+||.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+.....+....+.+....|+|+|+.|
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 457777763 44445566778889999999999999887653 35999998766555555555666789999999988
Q ss_pred EE-EeCCCeEEEE--ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeC--CCCeEEEEEecCCCCeEE
Q 008050 385 GT-TSFDKTWRLW--DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DALARVWDL--RTGRSILALEGHVKPVLG 458 (579)
Q Consensus 385 ~s-~s~dg~I~lw--d~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg~I~iwd~--~~~~~~~~~~~~~~~I~s 458 (579)
+. .+.+|...+| |+.++.. ..+..+........|+|||+.|+..+. +|...||.+ .++... .+..+......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~ 332 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTS 332 (427)
T ss_pred EEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCc
Confidence 64 5667765555 5554443 333344455667899999998776554 456666654 444432 22222233456
Q ss_pred EEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE--EEEEECCCCeEEEE
Q 008050 459 ISFSPNGYHLATGGEDN---TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT--VKVWSGRDFKLVKS 533 (579)
Q Consensus 459 i~~sp~g~~l~tgs~Dg---~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~--I~iwd~~~~~~~~~ 533 (579)
..|+|+|++|+..+.++ .|.+||+.+++... +..+ .......|+|++..++++....|. +++.+. ++.....
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~ 409 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR 409 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence 78999999998877554 69999998776543 3222 334678999985555555544443 555566 4556666
Q ss_pred ecCCCCcEEEEEEcCC
Q 008050 534 LSGHEAKVTSLDIHPD 549 (579)
Q Consensus 534 l~~h~~~V~~l~~s~d 549 (579)
+..+.+.+...+|+|-
T Consensus 410 l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 410 LSVQGGDVREPSWGPF 425 (427)
T ss_pred eecCCCCCCCCccCCC
Confidence 6667777888888873
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=147.04 Aligned_cols=217 Identities=15% Similarity=0.142 Sum_probs=156.7
Q ss_pred CCCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCC--cEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSL---SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADR--TARLWNT 357 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg--~I~iwd~ 357 (579)
.+...+.+.+|||||+.|+..+. +..|++|++.+++... +....+.+..+.|+|+|+.|+.. +.+| .|++||.
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 34567889999999999987653 4579999998875432 22233445678999999988765 4444 5888998
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD-K--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD-- 432 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d-- 432 (579)
++.....+..+...+....|+|+|+.|+.++.+ + .|+++|+.++..... ..+.....+..|+|||++|+..+.+
T Consensus 275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEEEEccCC
Confidence 777666666666678899999999988877754 3 456667777654433 2334445678999999988776543
Q ss_pred -CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 433 -ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNT---CRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 433 -g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~---I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
..|.+||+.++... .+... ....+..|+|||++|+.++.++. +.++++ ++.....+..|.+.+...+|+|
T Consensus 354 ~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 354 QQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 35888999887643 33322 22446789999999999987764 677787 5666677777888888888886
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.1e-14 Score=152.22 Aligned_cols=241 Identities=22% Similarity=0.320 Sum_probs=177.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecc---cCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCC-
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGH---LDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTG- 401 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h---~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd~~~~- 401 (579)
..-..+.|+|-...++++...-.|++|| ..++.+..|..+ ...|+.+++-. |..++++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3566788899889999998888999999 455666666543 35788888865 4458999999999999974321
Q ss_pred ----cEEEEEe-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCeEEEEEcC-CCCEE
Q 008050 402 ----VELLLQE-------GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSP-NGYHL 468 (579)
Q Consensus 402 ----~~~~~~~-------~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp-~g~~l 468 (579)
+.+.-.. +..+.-.-+.|.....+|+++|.-..|+|||...-..+..+. +....|+++.-+- .|+.|
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 2222111 111112346787766677777778999999998877776654 3344577776544 57999
Q ss_pred EEEeCCCcEEEEECCCCc---eeEEEeCCCCC--eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE--EecCCC--C
Q 008050 469 ATGGEDNTCRIWDLRKRK---SLYVIPAHSNL--ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK--SLSGHE--A 539 (579)
Q Consensus 469 ~tgs~Dg~I~iwDl~~~~---~~~~~~~~~~~--V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~--~l~~h~--~ 539 (579)
++|..||.|++||.|... .+.....|+.. |..+.+.+.+-.-|++|+.||.|++||++...... ++..|. +
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999998643 46667778877 99999998655569999999999999998743222 222332 3
Q ss_pred -cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 540 -KVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 540 -~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
..+++..+++...+++|+. +.|+||++...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 5899999999999999988 99999998643
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4e-15 Score=150.61 Aligned_cols=213 Identities=20% Similarity=0.328 Sum_probs=164.8
Q ss_pred eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-EecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 008050 362 LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHP--DGSLAASCGLDALARVW 438 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~sp--dg~~l~sg~~dg~I~iw 438 (579)
...+.+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+.. ..+|...|.++.|-| +..++++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 356789999999999999999999999999999999987666654 458999999999999 45689999999999999
Q ss_pred eCCCC----------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee-EE---------EeCCCCC
Q 008050 439 DLRTG----------RSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKSL-YV---------IPAHSNL 497 (579)
Q Consensus 439 d~~~~----------~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~-~~---------~~~~~~~ 497 (579)
|+... .....+..|...|..|+..|++ +.+.++++||+|+-||+|..... .. +...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99852 3345567788899999999988 88999999999999999863211 11 1111123
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCC--------Ce----------EEEEec-CCC-----------CcEEEEEEc
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRD--------FK----------LVKSLS-GHE-----------AKVTSLDIH 547 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~--------~~----------~~~~l~-~h~-----------~~V~~l~~s 547 (579)
..++.++|...++|++|+.|-..++||.+. +. ++..+. +|- ..++.+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 578889999999999999999999999321 11 232221 222 115677899
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 548 PDEQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 548 ~dg~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
|+|.-|+..-..-.|++++++.++...
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 999877666556679999998776443
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.1e-14 Score=135.08 Aligned_cols=238 Identities=16% Similarity=0.255 Sum_probs=169.0
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec-ccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCC----c-
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG-HLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTG----V- 402 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~----~- 402 (579)
.+..++|++.-..++++..|-.|++|+.+......++. ....|++++|-|.+. .|++|+ .+.|++|..... .
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccccc
Confidence 46778899877778999999999999966655555543 456799999999765 455554 566899976431 1
Q ss_pred ---------EEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 403 ---------ELLLQEGHSRSVYGIAFHPDGSLAASCGL-DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 403 ---------~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs 472 (579)
.+....+| ..|+++.|++||..+++++. |..|.|||..++..+-......+.++-+.|||+|.+|++++
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 11122344 68999999999999998874 67899999999987765544556789999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-------------eEEEEec----
Q 008050 473 EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-------------KLVKSLS---- 535 (579)
Q Consensus 473 ~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-------------~~~~~l~---- 535 (579)
.|+..++|+..............+.|...+|+|.+..+|++++..-.++-...... .++..+.
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 99999999654433333333445689999999987777777766554443322111 0111111
Q ss_pred -C----CCCcEEEEEEcCCCCEEEEEEcCCe--------EEEEEcCC
Q 008050 536 -G----HEAKVTSLDIHPDEQSIATVSHDRW--------IKLWSTRN 569 (579)
Q Consensus 536 -~----h~~~V~~l~~s~dg~~L~s~s~Dg~--------I~iW~~~~ 569 (579)
. -.+.+.+++|.|.|.+|++.-..+. |.+|+...
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 1 2467889999999999998765443 55666543
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.4e-13 Score=143.33 Aligned_cols=234 Identities=11% Similarity=0.046 Sum_probs=163.6
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEE
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA---DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL 384 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l 384 (579)
..|.+||.. +.....+..|...+.+..|+|+|+.|+..+. +..|++|++.+.....+..+.+.+....|+|+|+.|
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 478888874 4455566778889999999999999888764 468999998776666677777778889999999977
Q ss_pred E-EEeCCCe--EEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCeEE
Q 008050 385 G-TTSFDKT--WRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA--LARVWDLRTGRSILALEGHVKPVLG 458 (579)
Q Consensus 385 ~-s~s~dg~--I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~I~s 458 (579)
+ +.+.++. |++||+.++..... ..+........|+|||+.|+..+. +| .|++||+.++... .+..+...+..
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~ 338 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST 338 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEc-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence 5 4455554 88889988765443 345555677899999998877663 33 6888898766543 33334455677
Q ss_pred EEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeE
Q 008050 459 ISFSPNGYHLATGGED---NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKL 530 (579)
Q Consensus 459 i~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~ 530 (579)
..|+|+|++|+..+.+ ..|.+||+..+. ...+.. ...+....|+|++..+++++... ..++++|+..+..
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 8999999999887643 368889985543 333332 23467789999855444444333 3688888866544
Q ss_pred EEEecCCCCcEEEEEEcC
Q 008050 531 VKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 531 ~~~l~~h~~~V~~l~~s~ 548 (579)
..+. ..+.+...+|+|
T Consensus 417 -~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 417 -REVP-TPGDASDPAWSP 432 (435)
T ss_pred -EEcc-CCCCccCcccCC
Confidence 3444 244466777776
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=6e-14 Score=135.11 Aligned_cols=276 Identities=18% Similarity=0.302 Sum_probs=191.8
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-----eEEEEeCCC------------CCeEEEEEccCCC--EEEEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-----KFSALKGHT------------ERATDVTFSPVSN--HVATS 346 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~sp~~~--~l~s~ 346 (579)
..-|+++.|...|.+|+||..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999754322 233444453 4688999998764 57788
Q ss_pred eCCCcEEEEeCCCCeeE---------------------E----------------EecccCCeEEEEEecCCCEEEEEeC
Q 008050 347 SADRTARLWNTDGSLLN---------------------T----------------FQGHLDRLARMAFHPSGKYLGTTSF 389 (579)
Q Consensus 347 s~dg~I~iwd~~~~~~~---------------------~----------------~~~h~~~I~~l~~sp~~~~l~s~s~ 389 (579)
+.|.+|++|.+..+... . -..|..-|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 89999999984321100 0 02477788999999998887776 4
Q ss_pred CCeEEEEECCCCcE---EEEEecCC-----CCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEE----E--------
Q 008050 390 DKTWRLWDVDTGVE---LLLQEGHS-----RSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSIL----A-------- 448 (579)
Q Consensus 390 dg~I~lwd~~~~~~---~~~~~~~~-----~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~----~-------- 448 (579)
|-.|.+|+++-... +.-.+.++ .-|++..|||. .++++..+..|.|++.|+|.....- .
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999864322 22222222 24788899994 5688888999999999999543211 1
Q ss_pred ----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEEeCCCC------------C---eEEEEEeeCCC
Q 008050 449 ----LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL-RKRKSLYVIPAHSN------------L---ISQVKFEPQEG 508 (579)
Q Consensus 449 ----~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl-~~~~~~~~~~~~~~------------~---V~~v~~sp~~~ 508 (579)
|..-...|..+.|+.+|+|+++-.. -+|++||+ ...+++.+++.|.. . -..++|+-+ +
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~-~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN-D 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC-c
Confidence 1122345888999999999998654 58999999 45677777776642 1 235678764 6
Q ss_pred eEEEEEECCCEEEEEECCCCeEE-E-------------------Eec-CC-------------CCcEEEEEEcCCCCEEE
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLV-K-------------------SLS-GH-------------EAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~-~-------------------~l~-~h-------------~~~V~~l~~s~dg~~L~ 554 (579)
.++++|++.+.+++|+...|... . ... +. ...+...+|+|..+.|+
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia 421 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIA 421 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceee
Confidence 79999999999999995443210 0 000 10 12355668999988888
Q ss_pred EEEcCCeEEEE
Q 008050 555 TVSHDRWIKLW 565 (579)
Q Consensus 555 s~s~Dg~I~iW 565 (579)
++..+. ++||
T Consensus 422 ~aatnn-lyif 431 (433)
T KOG1354|consen 422 VAATNN-LYIF 431 (433)
T ss_pred eeecCc-eEEe
Confidence 887654 6665
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=145.04 Aligned_cols=196 Identities=19% Similarity=0.286 Sum_probs=143.1
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCeeEEEE----eCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEeccc
Q 008050 295 SHDGNLLATSSLSGVVKIWSMPRLQKFSAL----KGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLLNTFQGHL 369 (579)
Q Consensus 295 spdg~~latgs~dg~I~iwd~~~~~~~~~l----~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h~ 369 (579)
.+++--|++|-..|.|.+.|....+..+.+ ......|+|+.|-|.++ .++.+-.+|.+++||..- .
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~---------~ 252 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI---------V 252 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc---------c
Confidence 355667788888899999886542211111 12347899999999654 566677789999998521 1
Q ss_pred CCe--EEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 370 DRL--ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 370 ~~I--~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
... .+....+++..+.....-+. .+...+.......+.|+.++|++||++|++.+.||.++|||..+.+.+.
T Consensus 253 ~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 253 CGATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred ccCCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 111 12223345554444321110 0112222222233488999999999999999999999999999988888
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
.++..-+...|++|||||+||++|++|.-|.||.+..++.+..-.+|.++|+.|+|+|
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 8887788899999999999999999999999999999999999999999999999983
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=8.8e-13 Score=126.23 Aligned_cols=234 Identities=19% Similarity=0.261 Sum_probs=167.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe---eEEEecccCCeEEEEEecCCCEEE-EEeCC------CeEEEEECC
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDGSL---LNTFQGHLDRLARMAFHPSGKYLG-TTSFD------KTWRLWDVD 399 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~h~~~I~~l~~sp~~~~l~-s~s~d------g~I~lwd~~ 399 (579)
...+++|+.|...+++|..+| .+||+.+.-. ...+....-.+..+-| -.++|+ +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 455699999999999888776 7899865411 1111111112222222 234444 34333 579999966
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEecCC--CCeEEEEEcCCCCEEEE-EeCCC
Q 008050 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR-TGRSILALEGHV--KPVLGISFSPNGYHLAT-GGEDN 475 (579)
Q Consensus 400 ~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~--~~I~si~~sp~g~~l~t-gs~Dg 475 (579)
...++..+ ...++|.++.+.++ .|++. ..+.|.||... +-+.+..+.... ....+++-..+..+|+. |-.-|
T Consensus 84 k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 84 KERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 66666655 45678999999877 44444 47899999987 445555554332 23444444444455554 34679
Q ss_pred cEEEEECCCCce--eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE-EEEEECCCCeEEEEecC--CCCcEEEEEEcCCC
Q 008050 476 TCRIWDLRKRKS--LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKLVKSLSG--HEAKVTSLDIHPDE 550 (579)
Q Consensus 476 ~I~iwDl~~~~~--~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~-I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg 550 (579)
.|.|-|+...+. ...+.+|.+.|.+++++-+ |.+++++|..|+ |+|||..+++++..++. ....|.+++|||++
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 999999987655 5788999999999999987 899999999987 89999999999999963 33569999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCC
Q 008050 551 QSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.+|+++|.-|+|.||.+....
T Consensus 239 s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999997643
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.3e-13 Score=135.07 Aligned_cols=243 Identities=19% Similarity=0.274 Sum_probs=184.7
Q ss_pred CCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCCee-E------EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 327 HTERATDVTFSPVSN--HVATSSADRTARLWNTDGSLL-N------TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 327 h~~~V~~l~~sp~~~--~l~s~s~dg~I~iwd~~~~~~-~------~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
....|..++|..+++ .|..++.+..+..+.+....+ . ........|..+... +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345678888876654 344444666666666433211 1 223344556655544 44788889999999999
Q ss_pred CCCCc-----EEEEEecCCCCeEEEEEcCC-CCEEEEEeCC--CeEEEEeCCCCeEEEEEecCC---------CCeEEEE
Q 008050 398 VDTGV-----ELLLQEGHSRSVYGIAFHPD-GSLAASCGLD--ALARVWDLRTGRSILALEGHV---------KPVLGIS 460 (579)
Q Consensus 398 ~~~~~-----~~~~~~~~~~~V~~l~~spd-g~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~---------~~I~si~ 460 (579)
.+.+. .+... . ...+..+.-++. ..++++||.. ..+.|||+.+.+.+..-+.-. -.++++.
T Consensus 132 ~k~~d~hss~l~~la-~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA-T-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeee-c-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 98442 22222 2 245666666664 3466779988 889999999987666544321 2367888
Q ss_pred EcCC--CCEEEEEeCCCcEEEEECCCC-ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEE-ecC
Q 008050 461 FSPN--GYHLATGGEDNTCRIWDLRKR-KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS-LSG 536 (579)
Q Consensus 461 ~sp~--g~~l~tgs~Dg~I~iwDl~~~-~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~-l~~ 536 (579)
|.+. .+.|++++.-+.+++||.+.+ +++..|....+.++++...|. ++++++|..-|.+..||++.++++.. +.+
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeeccccCC
Confidence 9887 899999999999999999864 578888888899999999996 88999999999999999999998877 888
Q ss_pred CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 537 HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 537 h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
..+.|.++..+|.+++|++||-|+.|+|+|+.+.+..+
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 99999999999999999999999999999999866554
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.1e-12 Score=135.96 Aligned_cols=273 Identities=16% Similarity=0.147 Sum_probs=180.3
Q ss_pred CEE-EEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEE
Q 008050 299 NLL-ATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMA 376 (579)
Q Consensus 299 ~~l-atgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~ 376 (579)
+++ ++-..+|.|.|.|..+.+.+..+......-..+.|++||+++++++.||.|.++|+. .+.+..+.... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 444 445578999999999999999998655444557899999999999999999999964 45666665544 457899
Q ss_pred EecCCCEEEEEe-CCCeEEEEECCCCcEEEEEec-------CCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCeEEE
Q 008050 377 FHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEG-------HSRSVYGIAFHPDGSLAASC-GLDALARVWDLRTGRSIL 447 (579)
Q Consensus 377 ~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~-------~~~~V~~l~~spdg~~l~sg-~~dg~I~iwd~~~~~~~~ 447 (579)
++++|+++++++ ..+.+.++|.++.+.+..... ....+..+..++....++.. -..+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998876 589999999999988876542 23467788888888755555 445899999987765432
Q ss_pred -EEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeC----CCCCeEEEEEeeCC---------CeEEE
Q 008050 448 -ALEGHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEPQE---------GYFLV 512 (579)
Q Consensus 448 -~~~~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~~~~~~~~----~~~~V~~v~~sp~~---------~~~l~ 512 (579)
.............|+|+++|++++ ..++.|.++|..+++.+..+.. |...+..+ .+|.. +.+.+
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceec
Confidence 233344557889999999987775 4677999999999888776653 22333322 12211 22222
Q ss_pred EEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE----EcCCeEEEEEcCCCCccc
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV----SHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~----s~Dg~I~iW~~~~~~~~~ 574 (579)
+.-..+.+.+||..+++.+..+....+. ..+..+|++++|++. ...++|.++|..+.+...
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 2222345667888999999999877666 788889999999988 345899999998875443
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.1e-13 Score=144.41 Aligned_cols=217 Identities=18% Similarity=0.154 Sum_probs=155.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEE-EEeCCC--cEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLS---GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVA-TSSADR--TARLWNT 357 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-s~s~dg--~I~iwd~ 357 (579)
.+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.+...++.|+|+|+.|+ +.+.+| .|++|+.
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 456678999999999999988743 469999998776543 334455566899999999775 445555 5999998
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCEEEEEeC-CC--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF-DK--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA- 433 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-dg--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg- 433 (579)
.+.....+..+.......+|+|+|++|+.++. +| .|+++|+.+++..... .+.......+|+|||++|+..+.++
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCC
Confidence 77777777666666678899999998887764 44 4777788776654332 2233445689999999888765443
Q ss_pred --eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 434 --LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---NTCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 434 --~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
.|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++|+. +.....+..+.+.+...+|+|
T Consensus 359 ~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 359 QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 6999999887755 332 22234567999999988877653 468888884 445566655556677777765
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-12 Score=139.99 Aligned_cols=216 Identities=15% Similarity=0.177 Sum_probs=154.2
Q ss_pred CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 350 RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF---DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~---dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
..|.+||.++.....+..+...+....|+|+|+.|+..+. +..|++||+.++..... ..+.+.+.+..|+|||+.|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCCCcccCcEECCCCCEE
Confidence 3788999988888888888889999999999998888764 46899999988866433 3455667788999999876
Q ss_pred E-EEeCCCe--EEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeCCCCCeEE
Q 008050 427 A-SCGLDAL--ARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE-DN--TCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 427 ~-sg~~dg~--I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~-Dg--~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
+ +.+.+|. |.+||+.++.. ..+..+........|+|+|++|+..+. +| .|++||+..+.. ..+..+...+..
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~ 338 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYST 338 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccC
Confidence 5 5555554 77789887765 345555555678999999999887763 33 688889876544 344444455677
Q ss_pred EEEeeCCCeEEEEEEC-C--CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC------CeEEEEEcCCCC
Q 008050 501 VKFEPQEGYFLVTGSY-D--MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD------RWIKLWSTRNKG 571 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~-d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D------g~I~iW~~~~~~ 571 (579)
..|+|++ .+|+..+. . ..|.+||+.++.. ..+. +...+.+..|+|||++|+..+.+ ..|+++++..+.
T Consensus 339 ~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 339 PVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEECCCC-CEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 8899985 45544433 2 3688889765443 3332 22346788999999998765543 257777876543
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.9e-13 Score=142.46 Aligned_cols=218 Identities=18% Similarity=0.194 Sum_probs=153.1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEe--
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLS---GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVA-TSSADRTARLWN-- 356 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-s~s~dg~I~iwd-- 356 (579)
..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|+|+.|+ +.+.+|...||.
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 3566788999999999999887643 459999998886543 343445677899999999886 456777766665
Q ss_pred CCCCeeEEEecccCCeEEEEEecCCCEEEEEeC-CCeEEEE--ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 357 TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF-DKTWRLW--DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 357 ~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lw--d~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
..+.....+..+........|+|+|++|+..+. +|...+| ++.++...... .+........|+|||++|+..+.++
T Consensus 271 ~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 271 ADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred CCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEccC
Confidence 556566666666666677899999998887664 4555555 44555433322 2223344678999999988777554
Q ss_pred ---eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 434 ---LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN---TCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 434 ---~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg---~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
.|.+||+.+++...... . .......|+|||++|+.++.++ .+.+.++ ++.....+..+.+.+...+|+|
T Consensus 350 g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 350 GAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 69999998876543322 2 2346789999999988887544 3666676 4666666666667777778876
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=2.5e-12 Score=131.47 Aligned_cols=272 Identities=20% Similarity=0.322 Sum_probs=175.5
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-----eC-----CCcEEEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-----SA-----DRTARLW 355 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-----s~-----dg~I~iw 355 (579)
..+++.+++|++|++++.+. ++.++|++..++..+.+.... .+.++.|+|.+.+|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44577889999999988776 778999999888654444433 89999999999988762 11 2357799
Q ss_pred eCCCCe-eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC--EEEE----
Q 008050 356 NTDGSL-LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS--LAAS---- 428 (579)
Q Consensus 356 d~~~~~-~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~--~l~s---- 428 (579)
+..... ...+......-++..|+.|..+ ++--..+.+.+|++...+.+.. .-|...|+.+.++|.+. .+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 965522 2223222222257777776643 2222345677777655322221 12344455555554321 1111
Q ss_pred -EeCCCeEE---------------------------------------------------------EEeCCCCeEEEEEe
Q 008050 429 -CGLDALAR---------------------------------------------------------VWDLRTGRSILALE 450 (579)
Q Consensus 429 -g~~dg~I~---------------------------------------------------------iwd~~~~~~~~~~~ 450 (579)
+|.-+.++ ++++........+
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L- 267 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL- 267 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-
Confidence 12222333 3333311111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC---CCEEEEEEC
Q 008050 451 GHVKPVLGISFSPNGYHLATG--GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY---DMTVKVWSG 525 (579)
Q Consensus 451 ~~~~~I~si~~sp~g~~l~tg--s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~ 525 (579)
...++|.+++|+++|+.++++ -.-.++.|||++ +.+++.+. .++-+++-|+|. |++|+.++. -|.|.|||+
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCC-CCEEEEeecCCCCCceEEEec
Confidence 236789999999999776654 456789999985 66666553 466788999997 666665554 488999999
Q ss_pred CCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc------CCeEEEEEcCC
Q 008050 526 RDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH------DRWIKLWSTRN 569 (579)
Q Consensus 526 ~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~------Dg~I~iW~~~~ 569 (579)
.+.+++..+.... -+-+.|+|||++|+|++. |+.++||++..
T Consensus 344 ~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999998887544 466889999999998874 67899999854
No 234
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=7.6e-14 Score=130.07 Aligned_cols=237 Identities=18% Similarity=0.252 Sum_probs=165.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC---------CEEEEEeCCC-cEE
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS---------NHVATSSADR-TAR 353 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~---------~~l~s~s~dg-~I~ 353 (579)
.|...|+.+..-|+ ..|.+-+.|+.+.+|++.-...+.. |.-.++++.|++.. ..++.-+... .+.
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 45678888888887 6677888899999999877554432 44455666665421 1111111100 011
Q ss_pred EEeCCCCe-eEEE----ecccCCeEEEEEec-CCC--EEEEEeCCCeEEEEECCCCcEEE----------EEecCCCCeE
Q 008050 354 LWNTDGSL-LNTF----QGHLDRLARMAFHP-SGK--YLGTTSFDKTWRLWDVDTGVELL----------LQEGHSRSVY 415 (579)
Q Consensus 354 iwd~~~~~-~~~~----~~h~~~I~~l~~sp-~~~--~l~s~s~dg~I~lwd~~~~~~~~----------~~~~~~~~V~ 415 (579)
+-|..... +... .+..+.+.+..+.- .+. ++++|..+|.+.+||+.++..+. ....|..+|.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 11110011 1110 12345566666432 333 56677889999999999974433 3346888999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCC--e--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008050 416 GIAFHPDGSLAASCGLDALARVWDLRTG--R--SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~dg~I~iwd~~~~--~--~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
++.|.+.-..=++|+.+..+..|++... . .-......+-.|..+.+-||++.+++++.|+.|+||..++.+++..+
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 9999886666677888888999988643 1 12223333445889999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 492 ~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
..|...|++++|+|+ ..++++++.|+.|.+|++
T Consensus 290 kyHsagvn~vAfspd-~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPD-CELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCC-CchhhhccCCceEEeeec
Confidence 999999999999996 789999999999999986
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=6.7e-13 Score=125.32 Aligned_cols=157 Identities=19% Similarity=0.349 Sum_probs=113.5
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 008050 415 YGIAFHPDGSLAASCGL----------DALARVWDLRT-GRSILALEG-HVKPVLGISFSPNGYHLATGG--EDNTCRIW 480 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~----------dg~I~iwd~~~-~~~~~~~~~-~~~~I~si~~sp~g~~l~tgs--~Dg~I~iw 480 (579)
..+.|+++|.+|++-.. -|...+|.++. +..+..+.. ..++|.+++|+|+|..|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788998886665433 13345555532 223333332 345699999999999876553 56799999
Q ss_pred ECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 481 DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 481 Dl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
|++ ++.+..+. ...++.+.|+|+ |++|++++. .|.|.+||.++.+.+..+. |. .++.++|+|||++|++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPD-GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCC-CCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 996 66666664 467788999997 677777654 4779999999999988775 33 478999999999999887
Q ss_pred c------CCeEEEEEcCCCCccccccC
Q 008050 558 H------DRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 558 ~------Dg~I~iW~~~~~~~~~~~~~ 578 (579)
. |+.++||++. |++....++
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l~~~~~ 188 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLLYKKPF 188 (194)
T ss_pred eccceeccccEEEEEec-CeEeEecch
Confidence 4 7889999995 555555443
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.54 E-value=9.7e-13 Score=124.60 Aligned_cols=262 Identities=19% Similarity=0.205 Sum_probs=185.0
Q ss_pred CCeEEEEeCCCCeeEE--EE-eCCCCCeEEEEEcc---CCC-EEEEEeCCCcEEEEeCCCC-eeEEEecc---c---CCe
Q 008050 307 SGVVKIWSMPRLQKFS--AL-KGHTERATDVTFSP---VSN-HVATSSADRTARLWNTDGS-LLNTFQGH---L---DRL 372 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~--~l-~~h~~~V~~l~~sp---~~~-~l~s~s~dg~I~iwd~~~~-~~~~~~~h---~---~~I 372 (579)
.|.+.+|++...+... ++ ......+..+.|.- +|. .++-+...|.|.++..+.. ....+.+- . ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4788999987655443 22 22445677778863 444 5667778899999985542 22222221 1 124
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE--EEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCeEEEE
Q 008050 373 ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL--LQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLR-TGRSILA 448 (579)
Q Consensus 373 ~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~--~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~-~~~~~~~ 448 (579)
.++.|++.+..++++..+|.+.+-+........ ..+.|.-.++...|+. +.+++.+|+.||.+..||+| .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 578899999999999999999966655544333 5678988999999886 44689999999999999999 4444444
Q ss_pred -EecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CceeEEEeCCCCCeEEEEEeeCCCe-EEEEEECCCEEEEEE
Q 008050 449 -LEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQEGY-FLVTGSYDMTVKVWS 524 (579)
Q Consensus 449 -~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~V~~v~~sp~~~~-~l~sgs~dg~I~iwd 524 (579)
.+.|...|.+|.-+| .+.+|++|+.|-.|++||.|+ ++++..-.. .+.|..+.++|.... +|+++-.+| .+|-+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~ 282 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILD 282 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence 567888899999887 689999999999999999995 666655443 478999999985332 345555555 66666
Q ss_pred CCCC--e---EEEEecCCCCcEEEEEEcCCCCEEEEEE-cCCeEE-EEEcCCC
Q 008050 525 GRDF--K---LVKSLSGHEAKVTSLDIHPDEQSIATVS-HDRWIK-LWSTRNK 570 (579)
Q Consensus 525 ~~~~--~---~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~-iW~~~~~ 570 (579)
..+. + .+...+.|.+-+..-+|.....+|+||+ .|+.++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 5543 2 3445567888888888866556788876 677755 7865443
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=1e-10 Score=121.15 Aligned_cols=267 Identities=14% Similarity=0.205 Sum_probs=179.0
Q ss_pred EEEEecC----CeEEEEeC--CCCeeE--EEEeCCCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCC--ee---E
Q 008050 301 LATSSLS----GVVKIWSM--PRLQKF--SALKGHTERATDVTFSPVSNHVATSSA----DRTARLWNTDGS--LL---N 363 (579)
Q Consensus 301 latgs~d----g~I~iwd~--~~~~~~--~~l~~h~~~V~~l~~sp~~~~l~s~s~----dg~I~iwd~~~~--~~---~ 363 (579)
+++|+.. +.|++|++ .+++.. ..+ ........+++++++++|+++.. +|.|..|.++.. .+ .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556655 68888887 344332 222 24456678999999999998877 468999885542 22 3
Q ss_pred EEecccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC-cEEEE---Ee----------cCCCCeEEEEEcCCCCEEEE
Q 008050 364 TFQGHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTG-VELLL---QE----------GHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~-~~~~~---~~----------~~~~~V~~l~~spdg~~l~s 428 (579)
...........+++++++++|+++.. +|+|.+|++... ..... .. .......++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334455678999999999999885 799999999873 32221 10 12345789999999998877
Q ss_pred EeC-CCeEEEEeCCCCe--EE--EEEe-cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCc--eeEEEeCC---
Q 008050 429 CGL-DALARVWDLRTGR--SI--LALE-GHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLR--KRK--SLYVIPAH--- 494 (579)
Q Consensus 429 g~~-dg~I~iwd~~~~~--~~--~~~~-~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~--~~~--~~~~~~~~--- 494 (579)
... ...|.+|++.... .. ..+. .....-..+.|+|+|+++++.+ .++.|.+|++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 653 4589999997654 21 2222 2334578999999999887766 57789999988 332 22333221
Q ss_pred ---CCCeEEEEEeeCCCeEEEEEECCCEEEEEECC--CC--eEEEEecCCCCcEEEEEEcCCCCEEEEEE-cCCeEEEEE
Q 008050 495 ---SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR--DF--KLVKSLSGHEAKVTSLDIHPDEQSIATVS-HDRWIKLWS 566 (579)
Q Consensus 495 ---~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~--~~--~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~ 566 (579)
......+.++|++..++++....+.|.+|++. ++ +.+..+.........+.++++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578899999855555556678899999983 23 34445544444589999999999998887 567899998
Q ss_pred cC
Q 008050 567 TR 568 (579)
Q Consensus 567 ~~ 568 (579)
++
T Consensus 321 ~d 322 (345)
T PF10282_consen 321 ID 322 (345)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=7.1e-12 Score=133.46 Aligned_cols=234 Identities=16% Similarity=0.095 Sum_probs=157.4
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCE
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY 383 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~ 383 (579)
...|.++|... .....+..+...+.+..|+|+|++|+.++.+ ..|++|++.+.....+..+.+.+.++.|+|+|+.
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 34577888753 3345555677789999999999999887654 4799999876655556666666778999999997
Q ss_pred EEEE-eCCC--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCeE
Q 008050 384 LGTT-SFDK--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA--LARVWDLRTGRSILALEGHVKPVL 457 (579)
Q Consensus 384 l~s~-s~dg--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~I~ 457 (579)
|+.. +.++ .|++||+.++...... .+........|++||+.|+.++. .+ .|.+||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4443 5899999887654433 34444556789999998876654 33 6888888776643 3444455677
Q ss_pred EEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC--EEEEEECCCCeEEE
Q 008050 458 GISFSPNGYHLATGGEDN---TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM--TVKVWSGRDFKLVK 532 (579)
Q Consensus 458 si~~sp~g~~l~tgs~Dg---~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~~~ 532 (579)
.+.|+|+|++|+.++.++ .|.+||+.++... .+..+ .......|+|++..++++...++ .+++++. ++....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~ 402 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRA 402 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence 889999999999988776 7999999875433 33222 23345689998555545444333 3555554 344455
Q ss_pred EecCCCCcEEEEEE
Q 008050 533 SLSGHEAKVTSLDI 546 (579)
Q Consensus 533 ~l~~h~~~V~~l~~ 546 (579)
.+..+.+.+..++|
T Consensus 403 ~~~~~~g~~~~~~w 416 (417)
T TIGR02800 403 RLPLGNGDVREPAW 416 (417)
T ss_pred ECCCCCCCcCCCCC
Confidence 55544455555555
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=1.1e-12 Score=126.57 Aligned_cols=248 Identities=15% Similarity=0.237 Sum_probs=186.7
Q ss_pred EEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeC-CCCeeEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 276 LYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSM-PRLQKFSALK-GHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~-~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
..+.....||...|+....-|...-+++.+.|.+++||-- +.++.-..+. ....+++++.++.....|++|-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3455667789999998888888889999999999999963 4444443333 2456899999999999999999999999
Q ss_pred EEeCCC-----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 354 LWNTDG-----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 354 iwd~~~-----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
-+.... ...+.+..|...+..+.|+-....+++.+.|..+.---.+.+..+..+.- ....+++.|.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 887432 34556678999999999999999999999998776555555544322110 001111112111 5566
Q ss_pred EeCCCeEEEEeC--CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEee
Q 008050 429 CGLDALARVWDL--RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 429 g~~dg~I~iwd~--~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp 505 (579)
|...|.|.+..+ ..-..+.++.+|.+.+.+++|.+....|++|..|..+.+||+--++ ..+.+.+|...|..+...+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 666777666544 3456788999999999999999999999999999999999997544 4456778888998888877
Q ss_pred CCCeEEEEEECCCEEEEEECCC
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
. -..+++++.||.|.+|+.+.
T Consensus 251 ~-t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 H-TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred h-heeeeeccCCCeEEEEeccc
Confidence 5 67788999999999999653
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=138.39 Aligned_cols=258 Identities=23% Similarity=0.308 Sum_probs=192.3
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCe-eEEEecccCCeEEEEEecC--CCEEEEEeCCCeEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSL-LNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWR 394 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~-~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~ 394 (579)
.....+..|.+.|..|.|+..|..|++|+.|..|.+|| ..+.. +....+|...|....|-|. ...+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 34456778999999999999999999999999999999 44443 4445678888888888884 45899999999999
Q ss_pred EEECCCCcE---EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEE---ecCCC---CeEEEEEcC-
Q 008050 395 LWDVDTGVE---LLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILAL---EGHVK---PVLGISFSP- 463 (579)
Q Consensus 395 lwd~~~~~~---~~~~~~~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~---~I~si~~sp- 463 (579)
+-.+..... ......|.+.|.-++.-|+.. -|.+++.|+.+.-+|++++.....+ ..+.. ..+.|+..|
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887643322 234457889999999999654 7889999999999999987654333 22333 467889999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc------eeEEEeC------CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC--CC-
Q 008050 464 NGYHLATGGEDNTCRIWDLRKRK------SLYVIPA------HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR--DF- 528 (579)
Q Consensus 464 ~g~~l~tgs~Dg~I~iwDl~~~~------~~~~~~~------~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~--~~- 528 (579)
+.+++++|+.|-.+++||.+... .+..+.. ..-.|+++.|+.+++.+|++ ..|-.|++|.-. .+
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceEEeccccccCC
Confidence 55689999999999999987532 1233322 23458999999876666654 557779999532 22
Q ss_pred ---------eEEEE-ecCCCCc--EEEEE-EcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 529 ---------KLVKS-LSGHEAK--VTSLD-IHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 529 ---------~~~~~-l~~h~~~--V~~l~-~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
..+.. +++|.+. |-.+- |-|...|+++|+.=|.|.||+-++++.+..|+
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 23333 6788653 55554 57788999999999999999998887666554
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=8.6e-13 Score=143.47 Aligned_cols=274 Identities=18% Similarity=0.220 Sum_probs=192.6
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe------CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK------GHTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
.++++..+-. +||+.|. .-.|.+||+..+..+..+. .|...=.-- -.+.+++++..-+.+..=+.+..
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~~ 81 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASNQ 81 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhhh
Confidence 3444444443 5666554 5678999998876654433 231000000 01244555554443433332222
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC----eEEEEEcCCCCEEEEEeCCCeEE
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRS----VYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~----V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
....+. +.|....+.-....++.++.++.+.+||...+............ ..-+.++++.-++++|+.-+.|.
T Consensus 82 ~~~~~s---~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ii 158 (967)
T KOG0974|consen 82 IIERFS---DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEII 158 (967)
T ss_pred hhhhcc---ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEE
Confidence 222222 22333455556778999999999999999877665544322211 11223455666899999999999
Q ss_pred EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY-VIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~-~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
+|+....+.-..+.+|.+.|.++.|+.+|.++++.|.|.++++|++.+.+... ..-+|...|..++|.+. .+++++
T Consensus 159 vW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~g 235 (967)
T KOG0974|consen 159 VWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVG 235 (967)
T ss_pred EEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEec
Confidence 99987433333588999999999999999999999999999999999988776 56689999999999974 899999
Q ss_pred CCCEEEEEECCCCeEEEEecCCCC-cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 516 YDMTVKVWSGRDFKLVKSLSGHEA-KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
.|.+.++|+. ++..+..+.+|.. .|..++..++...++|++.||.+++|++......
T Consensus 236 edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 236 EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 9999999975 4555558887765 5899999999889999999999999999876544
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=1.1e-12 Score=126.64 Aligned_cols=242 Identities=19% Similarity=0.333 Sum_probs=175.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC------eeEEEeccc------------CCeEEEEEecCCC--EEEE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS------LLNTFQGHL------------DRLARMAFHPSGK--YLGT 386 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~------~~~~~~~h~------------~~I~~l~~sp~~~--~l~s 386 (579)
..+-|.+|.|...|.+|++|..+|.|.++.-+.. ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3457899999999999999999999999983321 233444443 3678899998765 7888
Q ss_pred EeCCCeEEEEECCCCcEE-----------------------------------E-EEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 387 TSFDKTWRLWDVDTGVEL-----------------------------------L-LQEGHSRSVYGIAFHPDGSLAASCG 430 (579)
Q Consensus 387 ~s~dg~I~lwd~~~~~~~-----------------------------------~-~~~~~~~~V~~l~~spdg~~l~sg~ 430 (579)
.+.|.+|++|-+...... . ....|...|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 889999999987532110 0 1125677799999999998888774
Q ss_pred CCCeEEEEeCCCCe---EEEEEecCC-----CCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce------eEEEe---
Q 008050 431 LDALARVWDLRTGR---SILALEGHV-----KPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKS------LYVIP--- 492 (579)
Q Consensus 431 ~dg~I~iwd~~~~~---~~~~~~~~~-----~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~------~~~~~--- 492 (579)
|=.|.+|++.--. .+..++.+. .-|++..|+| .++.|+.++..|+|++.|+|.... +....
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7899999986432 233344433 2488899999 567888888999999999985321 11111
Q ss_pred -------CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC-CCCeEEEEecCCC------------Cc---EEEEEEcCC
Q 008050 493 -------AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG-RDFKLVKSLSGHE------------AK---VTSLDIHPD 549 (579)
Q Consensus 493 -------~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~-~~~~~~~~l~~h~------------~~---V~~l~~s~d 549 (579)
.--..|+.+.|++. |+|+++-++ -+|++||+ ...+++.++..|. .. -..++|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11135788999985 888887654 57999998 4566666666553 12 256789999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCC
Q 008050 550 EQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+.+++||+....+++|+...+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 9999999999999999966554
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.7e-11 Score=131.03 Aligned_cols=234 Identities=13% Similarity=0.039 Sum_probs=155.4
Q ss_pred eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEE
Q 008050 309 VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLG 385 (579)
Q Consensus 309 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~ 385 (579)
.|.++|..... ...+..+...+....|+|+|+.|+..+.+ ..|.+|++.+.....+....+.+....|+|+|+.|+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 47777776543 44555677889999999999998877654 368899987665555555555566789999999887
Q ss_pred E-EeCCC--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCeEEE
Q 008050 386 T-TSFDK--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA--LARVWDLRTGRSILALEGHVKPVLGI 459 (579)
Q Consensus 386 s-~s~dg--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~I~si 459 (579)
. .+.+| .|++||+.++..... ..+........|+|||+.|+..+. +| .|.++|+.+++.... ..........
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~ 336 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARP 336 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEc-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccce
Confidence 4 44444 688889988765443 344455667899999997766553 33 577788877764322 2222234467
Q ss_pred EEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC--EEEEEECCCCeEEEEe
Q 008050 460 SFSPNGYHLATGGED-N--TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM--TVKVWSGRDFKLVKSL 534 (579)
Q Consensus 460 ~~sp~g~~l~tgs~D-g--~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~~~~l 534 (579)
.|+|+|++|+..+.+ + .|.+||+.++.... +.. ........|+|++..++++...+| .|++++.. +.....+
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l 413 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPL 413 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence 899999999887643 3 58889998776433 322 222235689998555555554443 46677764 3444455
Q ss_pred cCCCCcEEEEEEcC
Q 008050 535 SGHEAKVTSLDIHP 548 (579)
Q Consensus 535 ~~h~~~V~~l~~s~ 548 (579)
..+.+.+...+|+|
T Consensus 414 ~~~~g~~~~p~ws~ 427 (430)
T PRK00178 414 PTAQGEVREPSWSP 427 (430)
T ss_pred cCCCCCcCCCccCC
Confidence 55556677777876
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.1e-11 Score=132.60 Aligned_cols=234 Identities=18% Similarity=0.137 Sum_probs=154.2
Q ss_pred eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEE
Q 008050 309 VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD-R--TARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLG 385 (579)
Q Consensus 309 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~ 385 (579)
.|.++|..... ...+..+...+.+..|+|+|+.|+..+.+ + .|++||+.+.....+....+......|+|+|+.|+
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 56667765443 34455677789999999999998876543 3 58888876655444444344445789999999776
Q ss_pred E-EeCCCe--EEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCeEEE
Q 008050 386 T-TSFDKT--WRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA--LARVWDLRTGRSILALEGHVKPVLGI 459 (579)
Q Consensus 386 s-~s~dg~--I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~I~si 459 (579)
. .+.+|. |++||+.+++..... .+.......+|+|||+.|+..+. +| .|.++|+.+++.... ..........
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALTRIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCe
Confidence 5 455664 888899887654433 34455677899999997766553 33 567778877764332 2122223457
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE--EEEEECCCCeEEEEe
Q 008050 460 SFSPNGYHLATGGE-DN--TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT--VKVWSGRDFKLVKSL 534 (579)
Q Consensus 460 ~~sp~g~~l~tgs~-Dg--~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~--I~iwd~~~~~~~~~l 534 (579)
+|+|+|++|+..+. ++ .|.++|+.++... .+... .......|+|++..++++...+|. +++++. ++.....+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 89999999887664 33 4666788777543 23222 122345799986655565555543 777786 56666667
Q ss_pred cCCCCcEEEEEEcC
Q 008050 535 SGHEAKVTSLDIHP 548 (579)
Q Consensus 535 ~~h~~~V~~l~~s~ 548 (579)
..+.+.+...+|+|
T Consensus 433 ~~~~g~~~~p~Wsp 446 (448)
T PRK04792 433 PAGQGEVKSPAWSP 446 (448)
T ss_pred cCCCCCcCCCccCC
Confidence 66666778888886
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=4.2e-12 Score=119.93 Aligned_cols=155 Identities=25% Similarity=0.466 Sum_probs=110.9
Q ss_pred EEEEEecCCCEEEEEeC---C-------CeEEEEEC--CCCcEEEEEecCCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 008050 373 ARMAFHPSGKYLGTTSF---D-------KTWRLWDV--DTGVELLLQEGHSRSVYGIAFHPDGSLAASC--GLDALARVW 438 (579)
Q Consensus 373 ~~l~~sp~~~~l~s~s~---d-------g~I~lwd~--~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg--~~dg~I~iw 438 (579)
..+.|+++|++|++-.. | +...+|.+ .............+.|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56789999987776443 1 23444444 3332222222344579999999999976544 467899999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
|++ ++.+..+. ...++.|.|+|+|++|++++.+ |.|.+||+++.+.+..... ..++.+.|+|+ |++|+++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPd-Gr~~~ta~ 162 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPD-GRYLATAT 162 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCC-CCEEEEEE
Confidence 996 66666664 4568899999999999998743 6799999998888877653 34789999998 66666654
Q ss_pred C------CCEEEEEECCCCeEEEEe
Q 008050 516 Y------DMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 516 ~------dg~I~iwd~~~~~~~~~l 534 (579)
. |+.++||+.. |+++...
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eccceeccccEEEEEec-CeEeEec
Confidence 3 7889999974 6666544
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=3.4e-12 Score=133.05 Aligned_cols=281 Identities=16% Similarity=0.170 Sum_probs=203.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC---------------eeEEEEeCCCCCeEEEEEccCCCEEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL---------------QKFSALKGHTERATDVTFSPVSNHVATSSA 348 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~---------------~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~ 348 (579)
.+.....|+.|+....|+++|+.||.++|..+.+. ....++.||+..|.-+.|+.+.+.|-+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 45667889999999999999999999999987532 223467799999999999999999999999
Q ss_pred CCcEEEEe-CCCCeeEE--EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 349 DRTARLWN-TDGSLLNT--FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 349 dg~I~iwd-~~~~~~~~--~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
+|.|.+|- .++.-... -...++.|.+++|+.+|..++....||.|.+=.++... +.-..-...-...+.|++|...
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQ 170 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHH
Confidence 99999998 34432221 12345678899999999999999999999887775432 2211112223457889999998
Q ss_pred EEEEeCCCeEEEEeCCCCe-------EEEE----EecCCCCeEEEEEc--------CCCCEEEEEeCCCcEEEEECCCCc
Q 008050 426 AASCGLDALARVWDLRTGR-------SILA----LEGHVKPVLGISFS--------PNGYHLATGGEDNTCRIWDLRKRK 486 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~-------~~~~----~~~~~~~I~si~~s--------p~g~~l~tgs~Dg~I~iwDl~~~~ 486 (579)
++.+-.+|.+.+||....- +... +......|-.++|. |+...|+++...|.+.|..-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 8888899999999975421 1111 11222336667774 366789999999999887544433
Q ss_pred eeEEEeCCCCCeEEEEEeeCCCeEEEEEECC---------CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSYD---------MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d---------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
....+... -.+....|+++ |.+|+.++.+ +.|.+|. .-|+.+.+++.....|++++|-..|-.++.+
T Consensus 251 ~Pvv~dtg-m~~vgakWnh~-G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 251 EPVVVDTG-MKIVGAKWNHN-GAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CCeEEecc-cEeecceecCC-CcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 33333332 56888999996 7888887754 3567776 4577888888888889999998776655554
Q ss_pred cCCeEEEEEcCC
Q 008050 558 HDRWIKLWSTRN 569 (579)
Q Consensus 558 ~Dg~I~iW~~~~ 569 (579)
.|+.|++=+++.
T Consensus 327 vdsfiyfanIRP 338 (1189)
T KOG2041|consen 327 VDSFIYFANIRP 338 (1189)
T ss_pred ecceEEEEeecc
Confidence 466666655544
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.3e-12 Score=130.60 Aligned_cols=247 Identities=16% Similarity=0.204 Sum_probs=178.7
Q ss_pred CCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeeEEEecccCCeEE-EEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 008050 326 GHTERATDVTFSPVSNHV-ATSSADRTARLWNTDGSLLNTFQGHLDRLAR-MAFHPSGKYLGTTSFDKTWRLWDVDTGVE 403 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~-l~~sp~~~~l~s~s~dg~I~lwd~~~~~~ 403 (579)
.|....+.|..+|||+|+ ++|.+.-.|++||+..-.+..-......+.. ..++.|-..++.-..|.+|-+..-. |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 467788999999999985 6677788999999876544433333334433 3344455566666677777664322 211
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 008050 404 LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 404 ~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~ 483 (579)
..+. -...-..++++.-..-|++++....|+-+++..|..+..|....+.++++..++...+|++|+.+|.|.+||.+
T Consensus 128 y~~R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 128 YRTR--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeee--cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 1111 11223456666544446666667789999999999999998888999999999988899999999999999999
Q ss_pred CCceeEEEeC------CCC-----CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-cCCCCcEEEEEEcCC--
Q 008050 484 KRKSLYVIPA------HSN-----LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHEAKVTSLDIHPD-- 549 (579)
Q Consensus 484 ~~~~~~~~~~------~~~-----~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d-- 549 (579)
....+.++.. |.+ .|+++.|+.+ |-.+++|..+|.|.|||++..+++..- .+..-+|..+.|.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 8777666543 222 3899999975 889999999999999999998876443 234567899999775
Q ss_pred CCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 550 EQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
+..|++. ....++||+-.+++....++
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred CceEEec-chHHhhhcccccCCceeecc
Confidence 3446655 45789999998888766554
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.1e-11 Score=125.68 Aligned_cols=188 Identities=15% Similarity=0.251 Sum_probs=155.5
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC---CCCCeEEEEEc------c--------------CCCEEEEEeCCCc
Q 008050 295 SHDGNLLATSSLSGVVKIWSMPRLQKFSALKG---HTERATDVTFS------P--------------VSNHVATSSADRT 351 (579)
Q Consensus 295 spdg~~latgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~s------p--------------~~~~l~s~s~dg~ 351 (579)
.+-+.|+|....||.+++|+..+++....+.. -++..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567999999999999999998887776643 34456666663 1 2356888899999
Q ss_pred EEEEeCCC-CeeEEEe--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 352 ARLWNTDG-SLLNTFQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 352 I~iwd~~~-~~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
|.+|+..+ +....+. .|.+.|+++.++.+-..|.+++.|+.+..|+...+..+.........+.+++++|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 99999554 4444444 68999999999999999999999999999999999999999888899999999999999998
Q ss_pred EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCC-----CCEEEEEe-CCCcEEEEECCC
Q 008050 429 CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPN-----GYHLATGG-EDNTCRIWDLRK 484 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~-----g~~l~tgs-~Dg~I~iwDl~~ 484 (579)
++ +.|++||+.+++.+.+|.+|.++|.++.|.-+ |.+++++. .+..|.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 86 79999999999999999999999999999886 66666654 445577776543
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=6.1e-10 Score=115.34 Aligned_cols=261 Identities=18% Similarity=0.236 Sum_probs=172.3
Q ss_pred CCCeeEEEEcCCCCEEEEEec----CCeEEEEeCCCC----eeEEEEeCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEe
Q 008050 286 DRPLSGCSYSHDGNLLATSSL----SGVVKIWSMPRL----QKFSALKGHTERATDVTFSPVSNHVATSSA-DRTARLWN 356 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~----dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd 356 (579)
...-+.+++++++++|.+... +|.|..|++... +.+.........-..+++++++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345667889999999998876 578999988754 233444434456678999999999998875 78999999
Q ss_pred CCC--CeeEE---Ee----------cccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCc--EEE---EEecCCCCeE
Q 008050 357 TDG--SLLNT---FQ----------GHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTGV--ELL---LQEGHSRSVY 415 (579)
Q Consensus 357 ~~~--~~~~~---~~----------~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~~--~~~---~~~~~~~~V~ 415 (579)
++. ..... +. .......++.|+|+|+++++... ...|++|++.... ... ........-.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 654 22221 11 11244678999999998888764 4689999997654 211 2224456788
Q ss_pred EEEEcCCCCEEEEE-eCCCeEEEEeCC--CCeE--EEEEecC------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 008050 416 GIAFHPDGSLAASC-GLDALARVWDLR--TGRS--ILALEGH------VKPVLGISFSPNGYHLATGG-EDNTCRIWDLR 483 (579)
Q Consensus 416 ~l~~spdg~~l~sg-~~dg~I~iwd~~--~~~~--~~~~~~~------~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~ 483 (579)
.+.|+|+++++++. -.++.|.+|++. ++.. +..+... ......|.++|+|++|+++. .++.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 99999999977555 467889999988 4432 2222211 12578899999999988876 56789999994
Q ss_pred C--C--ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC--CCCeEEEEec-CCCCcEEEEEE
Q 008050 484 K--R--KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG--RDFKLVKSLS-GHEAKVTSLDI 546 (579)
Q Consensus 484 ~--~--~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~--~~~~~~~~l~-~h~~~V~~l~~ 546 (579)
. + +.+..+.........+.++|++..++++...++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 3 3344444445557899999985544455556889999965 5666544332 12334566665
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=3.5e-11 Score=128.15 Aligned_cols=213 Identities=19% Similarity=0.153 Sum_probs=149.2
Q ss_pred CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCC---CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 350 RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD---KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d---g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
..|.++|.++.....+..+...+....|+|+|++|+.++.+ ..|++||+.++...... .+...+.++.|+|||+.|
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence 36888888777777777777788999999999999887754 47999999988654433 344566778999999866
Q ss_pred EE-EeCCC--eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeCCCCCeEE
Q 008050 427 AS-CGLDA--LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED-N--TCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 427 ~s-g~~dg--~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D-g--~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
+. .+.++ .|++||+.++... .+..+........|+++|++|+..+.. + .|++||+.+++. ..+..+...+..
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~ 326 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNAS 326 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccC
Confidence 54 44444 5888999877543 333344445577899999988776643 3 688889876654 344444556778
Q ss_pred EEEeeCCCeEEEEEECCC---EEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC---eEEEEEcC
Q 008050 501 VKFEPQEGYFLVTGSYDM---TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR---WIKLWSTR 568 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---~I~iW~~~ 568 (579)
..|+|+ +.+|+.++.++ .|.+||+.++... .+..+ .......|+|+|++|+..+.++ .+++.+..
T Consensus 327 ~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 327 PSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred eEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 899997 55666666554 7899998875433 33222 2345668999999988877654 35555543
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.4e-11 Score=129.99 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=149.9
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEE-EeCCC--cEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLS---GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVAT-SSADR--TARLWNT 357 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s-~s~dg--~I~iwd~ 357 (579)
.+...+....|+|||+.|+..+.+ ..|++|++.+++... +....+.+....|+|+|+.|+. .+.+| .|++||.
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 456678899999999999877643 369999998876543 3333445667999999998874 44455 5888898
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCEEEEEeC-C--CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-C
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF-D--KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD-A 433 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-d--g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d-g 433 (579)
.+.....+..+........|+|+|+.|+..+. + ..|+++|+.+++....... ........|+|||+.|+..+.+ +
T Consensus 275 ~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 275 ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCC
Confidence 87777667666666777899999998876664 3 3688888887765443322 2233457899999988877643 3
Q ss_pred --eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 434 --LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---NTCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 434 --~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
.|.+||+.+++....... .......|+|||++|+..+.+ ..|.++++. +.....+..+.+.+....|+|
T Consensus 354 ~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 354 NFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 588899988765332222 122356899999998877643 357777874 444445555555666677765
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=1.4e-09 Score=110.72 Aligned_cols=258 Identities=10% Similarity=0.043 Sum_probs=170.6
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCC-CeeEEEecc-------c
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA----------DRTARLWNTDG-SLLNTFQGH-------L 369 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~----------dg~I~iwd~~~-~~~~~~~~h-------~ 369 (579)
|.|.+.|..+++.+..+..-..+-. + ++|+++.|+++.. +..|.+||... +.+..+... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999988875443333 4 9999999887766 68999999544 555555432 1
Q ss_pred CCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeEE
Q 008050 370 DRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT-GRSI 446 (579)
Q Consensus 370 ~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~-~~~~ 446 (579)
.....+.++++|++|++... +..|.++|+.+++.+....-.. ...-+..+.+..+ + -+.||......+.. |+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~-~-~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF-M-HCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE-E-EeecCceEEEEecCCCceE
Confidence 22347899999999998763 6899999999998887665322 2222222222222 1 12344443332221 2211
Q ss_pred -EE---EecC-----CCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----ceeEEEeC-------CCCCeEEEEEe
Q 008050 447 -LA---LEGH-----VKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKR-----KSLYVIPA-------HSNLISQVKFE 504 (579)
Q Consensus 447 -~~---~~~~-----~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~-----~~~~~~~~-------~~~~V~~v~~s 504 (579)
.. +... ..+ .|.+ +|.++++... |+|++.|+... ..+..+.. ..+.+.-++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 11 1110 122 3455 8888887776 99999996442 23333221 22334559999
Q ss_pred eCCCeEEEEEE---------CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC-EEEEEE-cCCeEEEEEcCCCCcc
Q 008050 505 PQEGYFLVTGS---------YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ-SIATVS-HDRWIKLWSTRNKGDE 573 (579)
Q Consensus 505 p~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s-~Dg~I~iW~~~~~~~~ 573 (579)
++++.+++... ..+.|.++|..+++.+..+.. ...+..+++++|++ +|++.. .++.|.++|..+++..
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 98666665331 225899999999999998864 34789999999999 777666 6788999999998877
Q ss_pred ccc
Q 008050 574 HAM 576 (579)
Q Consensus 574 ~~~ 576 (579)
..+
T Consensus 336 ~~i 338 (352)
T TIGR02658 336 SSV 338 (352)
T ss_pred eee
Confidence 765
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.1e-11 Score=129.19 Aligned_cols=216 Identities=19% Similarity=0.159 Sum_probs=146.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEE-EeCCCc--EEEEeCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLS---GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVAT-SSADRT--ARLWNTD 358 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s-~s~dg~--I~iwd~~ 358 (579)
+...+.+..|||||+.|+..+.+ ..|++||+.+++... +....+......|+|+|+.|+. .+.+|. |++||..
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 34577889999999999877543 368899988776532 2222334457899999998765 455664 7777887
Q ss_pred CCeeEEEecccCCeEEEEEecCCCEEEEEeC-C--CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC-
Q 008050 359 GSLLNTFQGHLDRLARMAFHPSGKYLGTTSF-D--KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA- 433 (579)
Q Consensus 359 ~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-d--g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg- 433 (579)
+.....+..+........|+|+|++|+..+. + ..|+++|+.+++...... ........+|+|||++|+..+. ++
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCCc
Confidence 7766666666666778899999998877654 3 357777888776544321 2222345789999998877654 33
Q ss_pred -eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 434 -LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED-N--TCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 434 -~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D-g--~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
.|.++|+.+++... +.... ......|+|||++|+..+.+ | .+++++. ++.....+..+.+.+....|+|
T Consensus 374 ~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 374 FNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred eEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 46667888776433 22221 12345799999988776643 3 3777786 5666666766666677778876
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.44 E-value=2.2e-10 Score=120.35 Aligned_cols=267 Identities=12% Similarity=0.052 Sum_probs=178.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMA 376 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~ 376 (579)
+..+++++.+|.|..+|..+++.+..+............ ++..+++++.+|.+..||. +++.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 678889999999999999999998876644332222322 4678888999999999996 56655544322 2222111
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeE-----EEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 008050 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVY-----GIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG 451 (579)
Q Consensus 377 ~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~-----~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 451 (579)
.. .+..++.++.+|.++.||.++|+.+.........+. +..+. + ..++.+..+|.+..+|.++|+.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 345778888899999999999988776643322111 11122 2 4677888899999999999987765432
Q ss_pred CCC----C---eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEE
Q 008050 452 HVK----P---VLGISFSP--NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 452 ~~~----~---I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
... . ...+.-+| .+..+++++.+|.++.||..+++.+...... ........ +..++.++.+|.++.
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~---~~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVD---DNRLYVTDADGVVVA 293 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceEe---CCEEEEECCCCeEEE
Confidence 110 0 00111111 3457888888999999999999888776532 12222332 345666778999999
Q ss_pred EECCCCeEEEEecCCC-CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 523 WSGRDFKLVKSLSGHE-AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 523 wd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
+|..+++.+....... ....+..+ .+..|++++.+|.|++|+..+++....++
T Consensus 294 ~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 294 LDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 9999998876653221 12223233 36789999999999999999888776654
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=8.9e-13 Score=149.17 Aligned_cols=197 Identities=19% Similarity=0.294 Sum_probs=166.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK-GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLN 363 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~ 363 (579)
+-..|.++.=+|...+.+||+.||.|++|....+..+..++ .-...|+.+.|+.+|+.+..+..||.+.+|....+...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~ 2286 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT 2286 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCccee
Confidence 34567777788888999999999999999999888887775 23488999999999999999999999999999989999
Q ss_pred EEecccCCeEEEEEecCCCEEEEEe---CCCeEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 364 TFQGHLDRLARMAFHPSGKYLGTTS---FDKTWRLWDVDT-GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~~l~s~s---~dg~I~lwd~~~-~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
..+.|......+.|-. ..+++++ .++.+.+||..- +....+...|.+.++++++-|..++|++||.+|.|++||
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 9999999999999985 5666654 368999999643 222333378999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
++..+.+.+++. +. ...+|++|+..|.|+||++.....++++..
T Consensus 2365 ~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred hHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999888777664 33 556899999999999999988877776653
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.5e-10 Score=122.98 Aligned_cols=240 Identities=13% Similarity=0.054 Sum_probs=152.9
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCE--E-EEEeCCC--cEEEEeCCCCeeEEEecccCCeEEEEEecCCC
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNH--V-ATSSADR--TARLWNTDGSLLNTFQGHLDRLARMAFHPSGK 382 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~--l-~s~s~dg--~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~ 382 (579)
+.|.+.|...+. ...+......+.+-.|+|||+. + ++...+| .|.+.++.+.....+....+......|+|||+
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 356677765443 3345555666788899999975 2 2444444 56677777765555555555566789999999
Q ss_pred EEEEEeC-CC----eEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE--eCCC-CeEEEEEe
Q 008050 383 YLGTTSF-DK----TWRLWDVDTG---VELLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVW--DLRT-GRSILALE 450 (579)
Q Consensus 383 ~l~s~s~-dg----~I~lwd~~~~---~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iw--d~~~-~~~~~~~~ 450 (579)
.|+..+. +| .+.+|++..+ ........+.......+|+|||+.|+..+ .+|...+| ++.. +.....+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 8887653 22 3444777653 33333333333456789999999777655 46654555 4432 23344444
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC--CCEEEEEEC
Q 008050 451 GHVKPVLGISFSPNGYHLATGGED---NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY--DMTVKVWSG 525 (579)
Q Consensus 451 ~~~~~I~si~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~--dg~I~iwd~ 525 (579)
.+...+....|+|||++|+..+.+ ..|.+||+.+++... +......+....|+|++..+++++.. .+.|++||+
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 455567789999999998877643 369999998876543 33333456779999985555445443 357888998
Q ss_pred CCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 526 RDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 526 ~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
.+++..... ...+.+...+|+|-.
T Consensus 403 ~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 403 ITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCEEEee-cCCCcccCceecCCC
Confidence 877654333 344556778888753
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=2.2e-10 Score=116.08 Aligned_cols=277 Identities=15% Similarity=0.190 Sum_probs=191.6
Q ss_pred CCeeEEEEcCCCCEEEEEecCC---------------eEEEEeCCCCeeEEEEeCCCCC--eE-EEEEccCCCEEEEEeC
Q 008050 287 RPLSGCSYSHDGNLLATSSLSG---------------VVKIWSMPRLQKFSALKGHTER--AT-DVTFSPVSNHVATSSA 348 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg---------------~I~iwd~~~~~~~~~l~~h~~~--V~-~l~~sp~~~~l~s~s~ 348 (579)
..|.-+.|||+++||.+-+..+ .+.+||+.++..+..+.+...+ .+ -+.|+.+..+++-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 3577788999999999976533 4999999999999998876665 55 68888888776544 3
Q ss_pred CCcEEEEeCCCCee-EEEecc-cCCeEEEEEecCCC--EEEE-----EeCCCeEEEEECCCCcEEEEEecCCCCeEEEEE
Q 008050 349 DRTARLWNTDGSLL-NTFQGH-LDRLARMAFHPSGK--YLGT-----TSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF 419 (579)
Q Consensus 349 dg~I~iwd~~~~~~-~~~~~h-~~~I~~l~~sp~~~--~l~s-----~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~ 419 (579)
...++|+++.+... ..+... ...|....|+|.++ .|+. .+..+.+++|.+..+..+....-..-.-..+.|
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 45789998633211 111111 35678888998644 3333 456789999999877766655444444457889
Q ss_pred cCCCCEEEEEe-----------CCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc
Q 008050 420 HPDGSLAASCG-----------LDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRK 486 (579)
Q Consensus 420 spdg~~l~sg~-----------~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~~~ 486 (579)
++.|.++++-- ....+.|+++.... +.....-.++|..++|.|.++.+++.+ .+..+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 99888766421 12457788887333 333335678899999999887776655 7889999999765
Q ss_pred eeEEEeCCCCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECCCCe-EEEEecCCCCcEEEEEEcCCCCEEEEEE-----
Q 008050 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGRDFK-LVKSLSGHEAKVTSLDIHPDEQSIATVS----- 557 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s----- 557 (579)
..+.+. ...=+.+.|+|. +++++.++. .|.|.+||..+.. ++..+.+.+ ..-+.|+|||+++.+..
T Consensus 309 l~~~~P--e~~rNT~~fsp~-~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 309 LRFYFP--EQKRNTIFFSPH-ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred eEEecC--CcccccccccCc-ccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCccc
Confidence 444333 344456889996 666666554 4789999976654 444666543 45678999999987764
Q ss_pred -cCCeEEEEEcCCCC
Q 008050 558 -HDRWIKLWSTRNKG 571 (579)
Q Consensus 558 -~Dg~I~iW~~~~~~ 571 (579)
.|..|+||++....
T Consensus 384 ~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 384 RVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCcceEEEEecCch
Confidence 37889999986543
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.9e-10 Score=122.17 Aligned_cols=221 Identities=15% Similarity=0.060 Sum_probs=143.5
Q ss_pred CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCE--E-EEEeCC--CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 008050 350 RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKY--L-GTTSFD--KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~--l-~s~s~d--g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
+.|.+.|.+|.....+......+..-.|+|||+. + ++...+ ..|++.++.+++...... ..+......|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCCC
Confidence 4677788888766666666666778899999975 2 244333 368888998876554432 344455689999998
Q ss_pred EEEEEeC-----CCeEEEEeCCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEE--EECCC-CceeEEEe
Q 008050 425 LAASCGL-----DALARVWDLRTG---RSILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRI--WDLRK-RKSLYVIP 492 (579)
Q Consensus 425 ~l~sg~~-----dg~I~iwd~~~~---~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~i--wDl~~-~~~~~~~~ 492 (579)
.|+..+. +..+.+|++..+ ........+.......+|+|||+.|+..+ .+|...| +++.. +.....+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 8776543 334555777653 32333333333446789999999887766 4565444 45532 23344454
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECC--CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc---CCeEEEEEc
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYD--MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH---DRWIKLWST 567 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~I~iW~~ 567 (579)
.+...+....|+|++..+++++..+ ..|++||+.+++... +......+.+..|+|||++|+..+. .+.|++|++
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 4555677899999854444444433 469999998887643 3333345678999999998875443 356888898
Q ss_pred CCCCc
Q 008050 568 RNKGD 572 (579)
Q Consensus 568 ~~~~~ 572 (579)
..++.
T Consensus 403 ~~g~~ 407 (428)
T PRK01029 403 ITKKT 407 (428)
T ss_pred CCCCE
Confidence 76643
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.39 E-value=9.1e-10 Score=126.21 Aligned_cols=284 Identities=16% Similarity=0.204 Sum_probs=195.9
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEE----eCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIW----SMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iw----d~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
.....|.++.|-++...++.+..+|.|.++ +..+.. +.....-...|.+++||||+..|+..+.+|++.+.+.+-
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 433322 222233567899999999999999999999988765321
Q ss_pred ------------------------CeeEEEec------------------------ccCCeEEEEEecCCCEEEEEeC--
Q 008050 360 ------------------------SLLNTFQG------------------------HLDRLARMAFHPSGKYLGTTSF-- 389 (579)
Q Consensus 360 ------------------------~~~~~~~~------------------------h~~~I~~l~~sp~~~~l~s~s~-- 389 (579)
+.-..|+| ....-..++|-.||.||++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 11111111 2224467889999999999875
Q ss_pred -C---CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEe----cCCCCeEE
Q 008050 390 -D---KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL---DALARVWDLRTGRSILALE----GHVKPVLG 458 (579)
Q Consensus 390 -d---g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~---dg~I~iwd~~~~~~~~~~~----~~~~~I~s 458 (579)
. ..+++|+-+ |....+.+.-.+--.+++|.|.|++|++... ...|.+|. ++|-.-..|. .....|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 2 579999976 5555444444444557899999999998764 34566776 4554444443 34567999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEeCC-CCCeEEEEEeeCCCeEEEEEECCCEEEEEECC----CC---
Q 008050 459 ISFSPNGYHLATGGEDNTCRIWDLRKRKS--LYVIPAH-SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR----DF--- 528 (579)
Q Consensus 459 i~~sp~g~~l~tgs~Dg~I~iwDl~~~~~--~~~~~~~-~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~----~~--- 528 (579)
+.|+.++..|+....|. |.+|-..+..- .+.+... ...+..+.|+|.....|...+.+|.+..++.. .+
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999988665 99999876542 2233322 23345599999777777777766666555421 00
Q ss_pred -----eEEEEec-----------------------CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 529 -----KLVKSLS-----------------------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 529 -----~~~~~l~-----------------------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
..+..+. .....|.+++|++++..+++-..||.|.+|....+.
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 1111111 124679999999999889999999999999965543
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=4.1e-11 Score=123.62 Aligned_cols=189 Identities=17% Similarity=0.199 Sum_probs=157.3
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcEEEEEec---CCCCeEEEEEc--------------------CCCCEEEEEeCCCeE
Q 008050 379 PSGKYLGTTSFDKTWRLWDVDTGVELLLQEG---HSRSVYGIAFH--------------------PDGSLAASCGLDALA 435 (579)
Q Consensus 379 p~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~---~~~~V~~l~~s--------------------pdg~~l~sg~~dg~I 435 (579)
+...|++....||.+++||..+++....+.. -.+..++..|. .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999998877665532 12344444442 244578889999999
Q ss_pred EEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 436 RVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
.+|++..|+....+. .|.+.|+++.++.+-..|.+++.|+.+..|+....+.+..+......+.+++++|+ +.++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D-~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD-GKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC-CCEEEe
Confidence 999999999887775 68899999999999999999999999999999999999999998899999999998 677777
Q ss_pred EECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCC-----CCEEEEE-EcCCeEEEEEcCCC
Q 008050 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPD-----EQSIATV-SHDRWIKLWSTRNK 570 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----g~~L~s~-s~Dg~I~iW~~~~~ 570 (579)
++ +.|++||+.+++.+..|.+|.++|.++.|.-+ |.+++++ ..+..+.+|-+...
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 65 67999999999999999999999999999876 6776554 45667888887653
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=4.1e-10 Score=118.26 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=169.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEE-EEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCe--
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATD-VTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRL-- 372 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I-- 372 (579)
++..+++++.+|.++.||..+++.+....... .+.+ ... .+..++.++.+|.|..||. +++.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 46778888899999999999999887765332 2221 111 2467778888999999996 455555544322211
Q ss_pred ---EEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC----C---eEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 008050 373 ---ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR----S---VYGIAFHP--DGSLAASCGLDALARVWDL 440 (579)
Q Consensus 373 ---~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~----~---V~~l~~sp--dg~~l~sg~~dg~I~iwd~ 440 (579)
....+. +..++.++.++.+..+|..+|+.+........ . ...+.-+| .+..+++++.+|.+..||.
T Consensus 181 ~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 181 RGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred cCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 111222 34778888899999999999987654321100 0 00011111 2457888888999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 441 RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
.+|+.+...... ....... .+..+++++.+|.|..+|..+++.+..... ........... +..+++++.+|.
T Consensus 259 ~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l~~~~~~G~ 331 (377)
T TIGR03300 259 RSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYLVVGDFEGY 331 (377)
T ss_pred CCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEEEEEeCCCE
Confidence 999887766521 1222222 456788888999999999999988876632 22222333332 446778899999
Q ss_pred EEEEECCCCeEEEEecCCCCcEE-EEEEcCCCCEEEEEEcCCeEEEE
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVT-SLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
|+++|..+++.+..+..+...+. +..+. + +.|+.++.||.|+.|
T Consensus 332 l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 99999999999998886665433 33333 3 458889999999876
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=4.5e-12 Score=143.59 Aligned_cols=222 Identities=21% Similarity=0.339 Sum_probs=171.5
Q ss_pred eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEE-ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Q 008050 325 KGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF-QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~-~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~ 402 (579)
+.+-..|.++.-+|...+.++|+.||.|++|.- .+..+..+ ......|+.+.|+.+|+.+.++..||.+.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 445667888998999999999999999999993 34444433 3344889999999999999999999999999987 55
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008050 403 ELLLQEGHSRSVYGIAFHPDGSLAASCG---LDALARVWDLRT-GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCR 478 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~spdg~~l~sg~---~dg~I~iwd~~~-~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~ 478 (579)
.......|+.....+.|-. ..+++++ .++.+.+||..- +........|.+.++++++.|+...|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 5666678999999998875 5677665 467899999653 222223378999999999999999999999999999
Q ss_pred EEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-C--CCc--E--EEEEEcCCCC
Q 008050 479 IWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG-H--EAK--V--TSLDIHPDEQ 551 (579)
Q Consensus 479 iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h--~~~--V--~~l~~s~dg~ 551 (579)
+||++..+.++.++. ++ ...+|++|+..|.|+||++....+++.+.. | .+- . ..+.+. .++
T Consensus 2362 l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~n 2429 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCN 2429 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCc
Confidence 999999888887765 33 367899999999999999998888777653 1 111 0 122222 234
Q ss_pred EEEEEEcCCe
Q 008050 552 SIATVSHDRW 561 (579)
Q Consensus 552 ~L~s~s~Dg~ 561 (579)
.|++|+.||+
T Consensus 2430 rifsCgad~~ 2439 (2439)
T KOG1064|consen 2430 RIFSCGADGT 2439 (2439)
T ss_pred eEEEecCCCC
Confidence 5777777763
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=1.6e-09 Score=108.92 Aligned_cols=274 Identities=16% Similarity=0.180 Sum_probs=189.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC-cEEEEeCCCCeeEEEecccCCeEEE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR-TARLWNTDGSLLNTFQGHLDRLARM 375 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg-~I~iwd~~~~~~~~~~~h~~~I~~l 375 (579)
+|++++..+ -|...|.+...+-.+. -+|.+.|.-..+.-+++-++.|..|| .+-|++..+..+..+....+.|.++
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence 578888887 5677777765554443 35788899999998889999999999 9999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCeEEEEEec
Q 008050 376 AFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA----LARVWDLRTGRSILALEG 451 (579)
Q Consensus 376 ~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg----~I~iwd~~~~~~~~~~~~ 451 (579)
..+++|++++++.....+.++|+.++.....-....+-|+.+.|||++++++.+--+| .|++||+.+++......
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT- 486 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT- 486 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-
Confidence 9999999999999999999999999988877777778899999999999999887666 68999999887654433
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEECCCC-c-eeEEEe-CCC--------------CC---------e
Q 008050 452 HVKPVLGISFSPNGYHLATGGE-------DNTCRIWDLRKR-K-SLYVIP-AHS--------------NL---------I 498 (579)
Q Consensus 452 ~~~~I~si~~sp~g~~l~tgs~-------Dg~I~iwDl~~~-~-~~~~~~-~~~--------------~~---------V 498 (579)
....=.+-+|.|+|++|..-+. |..+.=+....- + -+..+. +.. +. +
T Consensus 487 ~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~ 566 (668)
T COG4946 487 PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV 566 (668)
T ss_pred CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccc
Confidence 2222345678889988876652 332222221110 0 000110 000 00 0
Q ss_pred EEEEEeeCCCeEEEEEECCCEEEEEECCC--------------CeE-EEEec-----CCCCcEEEEEEcCCCCEEEEEEc
Q 008050 499 SQVKFEPQEGYFLVTGSYDMTVKVWSGRD--------------FKL-VKSLS-----GHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 499 ~~v~~sp~~~~~l~sgs~dg~I~iwd~~~--------------~~~-~~~l~-----~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
.-+-..+ +.+..+++-.+|.|.+|...- |.+ ...+. .-...++++..|+|++.|.. -.
T Consensus 567 eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~ 644 (668)
T COG4946 567 EPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KL 644 (668)
T ss_pred cccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-Ee
Confidence 0001111 233445555566666665321 000 11111 12356899999999999888 78
Q ss_pred CCeEEEEEcCC-CCccccc
Q 008050 559 DRWIKLWSTRN-KGDEHAM 576 (579)
Q Consensus 559 Dg~I~iW~~~~-~~~~~~~ 576 (579)
||.+++++++. .....+.
T Consensus 645 d~kl~~f~vekkPd~ekt~ 663 (668)
T COG4946 645 DGKLRLFDVEKKPDFEKTG 663 (668)
T ss_pred CCeEEEEecccCcchhhcc
Confidence 99999999987 3433333
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=3.7e-10 Score=114.50 Aligned_cols=278 Identities=16% Similarity=0.208 Sum_probs=195.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---------------
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD--------------- 349 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d--------------- 349 (579)
..-++..++|||.|.+|++.... .|.+|....+..+..+. ...|..+.|+|.+++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45588899999999999988755 48899988877666655 3469999999999999986543
Q ss_pred CcEEEEeCC-CCeeEEEecccCC--eE-EEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EEe-cCCCCeEEEEEcCCC
Q 008050 350 RTARLWNTD-GSLLNTFQGHLDR--LA-RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-LQE-GHSRSVYGIAFHPDG 423 (579)
Q Consensus 350 g~I~iwd~~-~~~~~~~~~h~~~--I~-~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-~~~-~~~~~V~~l~~spdg 423 (579)
+.+.+||.. +..+..+.....+ .+ -+.|+-+..|++-. ....++++++ ++.... -+. .....|....|+|.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 359999954 5566666665554 44 67888888877655 5567999997 332221 111 123568888999964
Q ss_pred C--EEEE-----EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCC
Q 008050 424 S--LAAS-----CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG-----------EDNTCRIWDLRKR 485 (579)
Q Consensus 424 ~--~l~s-----g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-----------~Dg~I~iwDl~~~ 485 (579)
+ .|+. ++..+.+++|.+..++.+.+.....-.-..+.|.+.|++|++-- ....++|++++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 3 3443 45788999999988777665544444445788999998876532 2346888888744
Q ss_pred ceeEEEeCCCCCeEEEEEeeCCCeEEEEE-ECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC---Ce
Q 008050 486 KSLYVIPAHSNLISQVKFEPQEGYFLVTG-SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD---RW 561 (579)
Q Consensus 486 ~~~~~~~~~~~~V~~v~~sp~~~~~l~sg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g~ 561 (579)
.+.... .-.++|...+|.|.+..+.++. -.+-.+.++|++.. +...+ ....=..+.|+|.+++++.++.| |.
T Consensus 266 ~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 266 SIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred ccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccc
Confidence 333332 4578999999999876665544 56888999998866 33333 34445667799999998887766 67
Q ss_pred EEEEEcCCCC
Q 008050 562 IKLWSTRNKG 571 (579)
Q Consensus 562 I~iW~~~~~~ 571 (579)
|-+|+..+.-
T Consensus 342 i~i~~~~~rf 351 (561)
T COG5354 342 IEIFDPAGRF 351 (561)
T ss_pred eEEeccCCce
Confidence 8888876654
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=2e-09 Score=125.60 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=164.9
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEec--------------ccCCeEEEEEecCCCEEEEEeC-CCeEEE
Q 008050 332 TDVTFSPV-SNHVATSSADRTARLWNTDGSLLNTFQG--------------HLDRLARMAFHPSGKYLGTTSF-DKTWRL 395 (579)
Q Consensus 332 ~~l~~sp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------------h~~~I~~l~~sp~~~~l~s~s~-dg~I~l 395 (579)
..+++++. +.++++-+.++.|.+||.++..+..+.+ .......+++.++++.|+++.. ++.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35788765 5566666778899999988876655433 1123578999998887666554 578999
Q ss_pred EECCCCcEEEEEe-cC---------------CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecC------
Q 008050 396 WDVDTGVELLLQE-GH---------------SRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSILALEGH------ 452 (579)
Q Consensus 396 wd~~~~~~~~~~~-~~---------------~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~------ 452 (579)
+|..++....... +. -..-++++|++ ++.++++.+.++.|++||..++... .+.+.
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 9987765432211 00 12346799999 5667777778899999999877543 22111
Q ss_pred ---------CCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEeC-------------C--------CCCeEEE
Q 008050 453 ---------VKPVLGISFSPNGYHLA-TGGEDNTCRIWDLRKRKSLYVIPA-------------H--------SNLISQV 501 (579)
Q Consensus 453 ---------~~~I~si~~sp~g~~l~-tgs~Dg~I~iwDl~~~~~~~~~~~-------------~--------~~~V~~v 501 (579)
......|+|+++|.+|+ +.+.++.|++||+.++.......+ + -.....+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 12356799999988554 555678999999987653211100 0 0123578
Q ss_pred EEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec-------------CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 502 KFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS-------------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+++++ +.++++.+.++.|++||..++....... ++-.....++++++|+++++-+.++.|++|++.
T Consensus 810 avd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeCC-CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 89986 6788888889999999998876553321 112357889999999988888899999999998
Q ss_pred CCCc
Q 008050 569 NKGD 572 (579)
Q Consensus 569 ~~~~ 572 (579)
++..
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8764
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=131.24 Aligned_cols=192 Identities=22% Similarity=0.345 Sum_probs=156.9
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC----eEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEE
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTER----ATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNT 364 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~----V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~ 364 (579)
....+.-+...++.++.++.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+... +.-..
T Consensus 91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 91 FGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred cccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence 33556667788999999999999999887776665533221 12233455667899999999999999543 22336
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
+.+|.+.|.++.|+-+|+++++.|.|.++++|++++.+... ...+|...|+.++|+++ .+++++.|.+.++|+. ++
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 89999999999999999999999999999999999987766 66699999999999998 9999999999999975 34
Q ss_pred eEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 444 RSILALEGHV-KPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 444 ~~~~~~~~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
..+..+..|. +.|..++..++...+++++.||.+++||+..
T Consensus 248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 5555777775 4589999999999999999999999999754
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=2.3e-10 Score=108.70 Aligned_cols=237 Identities=19% Similarity=0.239 Sum_probs=166.2
Q ss_pred CCCCeeEEEEcC---CCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCC------CeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 285 DDRPLSGCSYSH---DGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTE------RATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 285 h~~~I~~~~~sp---dg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
....+..+.|.. +|. .++-+...|.|.+|..........+.+-.. ...++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 445566666653 455 566777889999998766555555543221 2457889999999999999999996
Q ss_pred EeCCC---CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCC-CcEEEE-EecCCCCeEEEEEcC-CCCEEE
Q 008050 355 WNTDG---SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDT-GVELLL-QEGHSRSVYGIAFHP-DGSLAA 427 (579)
Q Consensus 355 wd~~~---~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~-~~~~~~-~~~~~~~V~~l~~sp-dg~~l~ 427 (579)
-+.+. +.++.++.|.-+++...|+... +.+++|+.|+.+..||++. ++.+.. ..-|...|.+|.-+| .+.+++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 55333 3444788999999999998744 5889999999999999983 333333 346788899998887 577999
Q ss_pred EEeCCCeEEEEeCCC-CeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--c---eeEEEeCCCCCeE
Q 008050 428 SCGLDALARVWDLRT-GRSILALEGHVKPVLGISFSPN--GYHLATGGEDNTCRIWDLRKR--K---SLYVIPAHSNLIS 499 (579)
Q Consensus 428 sg~~dg~I~iwd~~~-~~~~~~~~~~~~~I~si~~sp~--g~~l~tgs~Dg~I~iwDl~~~--~---~~~~~~~~~~~V~ 499 (579)
+|+.|-.|++||.|+ ++++..-. -.+.|..+.++|. +..|+++-.+| .+|-+...+ + .+...+.|.+.+.
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~Y 305 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCY 305 (339)
T ss_pred EeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceee
Confidence 999999999999995 55554443 3467999999994 34455544544 677766543 2 3345556777777
Q ss_pred EEEEeeCCCeEEEEEE-CCCEEE-EEE
Q 008050 500 QVKFEPQEGYFLVTGS-YDMTVK-VWS 524 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs-~dg~I~-iwd 524 (579)
.-.|... ..+|++++ +|+.++ +|-
T Consensus 306 G~DWd~~-~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 306 GGDWDSK-DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccc-cceeeeeeccccceeeeee
Confidence 7777543 45677765 365544 553
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=8.1e-10 Score=112.95 Aligned_cols=273 Identities=15% Similarity=0.221 Sum_probs=189.6
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC-----------CCcEEEEeC-
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA-----------DRTARLWNT- 357 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~-----------dg~I~iwd~- 357 (579)
+-+.|||.|.||++-...| |.+|--.+...++.+. |. .|.-+.|||..+||++-+. ...++|||+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4688999999999998766 7789877776666654 43 6899999999999998654 257999995
Q ss_pred CCCeeEEEeccc---CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC---
Q 008050 358 DGSLLNTFQGHL---DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL--- 431 (579)
Q Consensus 358 ~~~~~~~~~~h~---~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~--- 431 (579)
.|.....+.... ..-.-+.||.|++|++.... .+|.||+..+...+-...-.-..|..+.|+|.+++|+.=..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 455555554422 22235789999999987765 67889987664333333334467888999999988875432
Q ss_pred --CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCce-eEEEeCCCCCe
Q 008050 432 --DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG----------EDNTCRIWDLRKRKS-LYVIPAHSNLI 498 (579)
Q Consensus 432 --dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs----------~Dg~I~iwDl~~~~~-~~~~~~~~~~V 498 (579)
-..+.+..+.+++.+.+...++-.=..+.|-.+|.+|+.-- .-..+-|+.++.... +..+. -...|
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~v 448 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESV 448 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchhe
Confidence 24677788888887777666554445677888998887642 112355666655432 23332 24567
Q ss_pred EEEEEeeCCCeEEEEEEC--CCEEEEEECCC----CeEEEEecCCCCcEEEEEEcCCCCEEEEEE---cCCeEEEEEcCC
Q 008050 499 SQVKFEPQEGYFLVTGSY--DMTVKVWSGRD----FKLVKSLSGHEAKVTSLDIHPDEQSIATVS---HDRWIKLWSTRN 569 (579)
Q Consensus 499 ~~v~~sp~~~~~l~sgs~--dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s---~Dg~I~iW~~~~ 569 (579)
...+|.|.+..+.+..+. ..++.+|.+.+ .+++..+.. ...+.+.|+|.|++++.+. ..|.+.++|...
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 889999986666555554 36788887762 345555543 4468899999999987764 568999999874
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=6.4e-09 Score=121.47 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=164.1
Q ss_pred EEEEcCC-CCEEEEEecCCeEEEEeCCCCeeEEEEeC--C------------CCCeEEEEEccCCCEEEEEeC-CCcEEE
Q 008050 291 GCSYSHD-GNLLATSSLSGVVKIWSMPRLQKFSALKG--H------------TERATDVTFSPVSNHVATSSA-DRTARL 354 (579)
Q Consensus 291 ~~~~spd-g~~latgs~dg~I~iwd~~~~~~~~~l~~--h------------~~~V~~l~~sp~~~~l~s~s~-dg~I~i 354 (579)
.++++++ ++++++-+.++.|.+||... ..+..+.+ . -..-..|+++++++.|+++.. ++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788875 56777777889999999754 44433332 1 123578999998887666554 578999
Q ss_pred EeCCCCeeEEEecc-----------------cCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEEe--------
Q 008050 355 WNTDGSLLNTFQGH-----------------LDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQE-------- 408 (579)
Q Consensus 355 wd~~~~~~~~~~~h-----------------~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-------- 408 (579)
+|..+..+.++.+. ......++|++ ++..+++.+.++.|++||..++.......
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLN 730 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCC
Confidence 99877776665331 12346799999 55566666778999999998775432210
Q ss_pred c------CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEec-------------C--------CCCeEEEE
Q 008050 409 G------HSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILALEG-------------H--------VKPVLGIS 460 (579)
Q Consensus 409 ~------~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~-------------~--------~~~I~si~ 460 (579)
+ .......|+|++++. ++++.+.++.|++||+.++.......+ . .....+++
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 0 012355799999988 555666679999999987653221100 0 11246899
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-------------CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 461 FSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-------------HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 461 ~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-------------~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
|+++|..+++.+.++.|++||..++........ .-.....++++++ ++++++.+.++.|++||+.+
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d-G~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN-GRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC-CCEEEEECCCCEEEEEECCC
Confidence 999999888888999999999987655433211 1124678999996 67888888899999999988
Q ss_pred CeE
Q 008050 528 FKL 530 (579)
Q Consensus 528 ~~~ 530 (579)
++.
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 764
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=8.8e-11 Score=123.22 Aligned_cols=282 Identities=20% Similarity=0.307 Sum_probs=194.9
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CeeEEEEeCCC--CCeEEEEEccCC--CEEEEEeCCCcEEEEeCC--
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR-LQKFSALKGHT--ERATDVTFSPVS--NHVATSSADRTARLWNTD-- 358 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~-~~~~~~l~~h~--~~V~~l~~sp~~--~~l~s~s~dg~I~iwd~~-- 358 (579)
.+++.++.++|.|+-++.++.-|.+ +.|+.. +....-+. |. -.|-.+.|++.. .+-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 4678899999999999999877754 455543 33322222 32 247788888754 455666666777899842
Q ss_pred --CCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 359 --GSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGV-ELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 359 --~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
...-..+.+|...|+.+.|++... .+++++.|..+..||+++-. .+.....-...-..++|+-....+.+.+....
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 234456788999999999999765 78899999999999998754 33344444455667889875555666667888
Q ss_pred EEEEeCCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEE-EeCCCCCeEEEEEeeCCCeEE
Q 008050 435 ARVWDLRTG-RSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYV-IPAHSNLISQVKFEPQEGYFL 511 (579)
Q Consensus 435 I~iwd~~~~-~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l 511 (579)
|++||++.| ..+..+++|...|+++.|.. ....+.+++.||+|+.||..+...... ......+|..-++.|-+..++
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999976 46778899999999999977 334678889999999999875432211 112234555555655433222
Q ss_pred EEE-ECCCEEEEE---------ECCC-CeEEEEecCCCCcEEEEEEcCCCC----------EEEEEEcCCeEEEEEcCC
Q 008050 512 VTG-SYDMTVKVW---------SGRD-FKLVKSLSGHEAKVTSLDIHPDEQ----------SIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 512 ~sg-s~dg~I~iw---------d~~~-~~~~~~l~~h~~~V~~l~~s~dg~----------~L~s~s~Dg~I~iW~~~~ 569 (579)
+.- -.++.+.++ +..+ .+.+..|.||.+.|....|-..+. .|+|-+.|.++++|-+.+
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 221 112234343 3322 467899999999988777754322 599999999999999864
No 271
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=4e-08 Score=96.66 Aligned_cols=263 Identities=15% Similarity=0.186 Sum_probs=179.2
Q ss_pred CCeEEEEeCCCCe--e-EEEEeCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCC--CeeEEEe---cccCCeEEE
Q 008050 307 SGVVKIWSMPRLQ--K-FSALKGHTERATDVTFSPVSNHVATSSAD---RTARLWNTDG--SLLNTFQ---GHLDRLARM 375 (579)
Q Consensus 307 dg~I~iwd~~~~~--~-~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~--~~~~~~~---~h~~~I~~l 375 (579)
+.-|++|++.+.. . ...+-.+.+..+-|+|++++++|.++-.+ |.|.-|.++. ..+..+. .....-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4679999987322 1 11223467789999999999999888654 6777777554 2333222 223344889
Q ss_pred EEecCCCEEEEEeCC-CeEEEEECCC-CcEEE--EEecCCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 008050 376 AFHPSGKYLGTTSFD-KTWRLWDVDT-GVELL--LQEGHSRS----------VYGIAFHPDGSLAASCGL-DALARVWDL 440 (579)
Q Consensus 376 ~~sp~~~~l~s~s~d-g~I~lwd~~~-~~~~~--~~~~~~~~----------V~~l~~spdg~~l~sg~~-dg~I~iwd~ 440 (579)
+++++|++++++... |.|.++-+.. |.... ....|.+. +.+..|.|++++|++.+. -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 999999999998874 7899998865 32221 12234333 788999999999988764 457999999
Q ss_pred CCCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEEeC---------CCCCeEEEEEeeC
Q 008050 441 RTGRSILALE---GHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKR-KSLYVIPA---------HSNLISQVKFEPQ 506 (579)
Q Consensus 441 ~~~~~~~~~~---~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~-~~~~~~~~---------~~~~V~~v~~sp~ 506 (579)
..|+....-. .....-..|.|+|++++.++.+ -+++|.+|..... ..+..++. .......|.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9776432211 2334467899999999988777 5889999998763 22222221 2356778899997
Q ss_pred CCeEEEEEEC-CCEEEEEECCC--Ce--EEEEecCCCCcEEEEEEcCCCCEEEEEEcC-CeEEEEEcCCC
Q 008050 507 EGYFLVTGSY-DMTVKVWSGRD--FK--LVKSLSGHEAKVTSLDIHPDEQSIATVSHD-RWIKLWSTRNK 570 (579)
Q Consensus 507 ~~~~l~sgs~-dg~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~I~iW~~~~~ 570 (579)
|+||.++.. ...|.+|.+.. ++ .+.....+......+.|+++|++|++++.+ ..|.+|.+...
T Consensus 255 -GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 255 -GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred -CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 677766543 45788887643 33 222333444457889999999999888754 56899987653
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=3.4e-11 Score=122.42 Aligned_cols=279 Identities=18% Similarity=0.200 Sum_probs=191.7
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-------CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR-------LQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
+...||...|..++--.+.+-+++++.|.+|++|.+.. ..+..+++.|+.+|.++.|-.+.++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 45578888888887767778889999999999999853 33567788999999999999888877654 7899
Q ss_pred EEEe-CCCCeeEEEe--cccCCeEEEEEecC--CCEEEEE-eCCCeEEEEECCCCcEEEEEe-----cCCCCeEEEEEcC
Q 008050 353 RLWN-TDGSLLNTFQ--GHLDRLARMAFHPS--GKYLGTT-SFDKTWRLWDVDTGVELLLQE-----GHSRSVYGIAFHP 421 (579)
Q Consensus 353 ~iwd-~~~~~~~~~~--~h~~~I~~l~~sp~--~~~l~s~-s~dg~I~lwd~~~~~~~~~~~-----~~~~~V~~l~~sp 421 (579)
.+|| +-+..+.... ...+.+..+..-++ ...++.| +...+|+++|.+.+....... +.+..+.+++..+
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999 5565544222 11222333333333 3444444 678999999999887655443 3446688999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceeEEEeCCCCCeEE
Q 008050 422 DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI-WDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~i-wDl~~~~~~~~~~~~~~~V~~ 500 (579)
.|++++.+-.+|+|.+.|.++|+.+..+.........++ .|....|+....|.++.+ |..-.+......+....+..
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah- 964 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH- 964 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh-
Confidence 999999999999999999999998887765554444444 244556777778888888 88766655555543322211
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECC----CCeEEEEec--CCCCcEEEEEEcCCCCEEEEEEcCCeEEE
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGR----DFKLVKSLS--GHEAKVTSLDIHPDEQSIATVSHDRWIKL 564 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~----~~~~~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~I~i 564 (579)
|-..-|--|++....+.+.+|--. -...+.+++ ...+..++++.-|-+.-++.|...|.|.+
T Consensus 965 --flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 --FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred --hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111124446666666777787411 111222222 23456788888887777888888888875
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.4e-09 Score=109.52 Aligned_cols=278 Identities=13% Similarity=0.166 Sum_probs=185.2
Q ss_pred CCeeEEEEcCCCCEEEEEec-----------CCeEEEEeCCCCeeEEEEeCCCC---CeEEEEEccCCCEEEEEeCCCcE
Q 008050 287 RPLSGCSYSHDGNLLATSSL-----------SGVVKIWSMPRLQKFSALKGHTE---RATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~-----------dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
..|.-+.|||+.+||+|-+. ...+.|||+.+|.....+....+ .-.-+.||.|+++++.-.. ..|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 35778999999999999753 25799999999998888765222 2234689999999987666 568
Q ss_pred EEEeCCCCeeEE-EecccCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 353 RLWNTDGSLLNT-FQGHLDRLARMAFHPSGKYLGTTSF-----DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 353 ~iwd~~~~~~~~-~~~h~~~I~~l~~sp~~~~l~s~s~-----dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
.||+...-.+.. -.-....|..+.|+|.++.|+.=+- -..+.+..+-+++.+....-++-.=..+.|..+|.+|
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 999854422211 1223466888999999988775332 2457777777777777665554444456777788887
Q ss_pred EEEe----------CCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCC-C---ceeE
Q 008050 427 ASCG----------LDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE---DNTCRIWDLRK-R---KSLY 489 (579)
Q Consensus 427 ~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~---Dg~I~iwDl~~-~---~~~~ 489 (579)
+.-- .-..+.|+.++....-...-.-...|...+|-|.|+.+++-+. ..++.+|-+.+ . +.+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 7532 2224556666654322222223456889999999988877653 35788888763 2 2233
Q ss_pred EEeCCCCCeEEEEEeeCCCeEEEEE---ECCCEEEEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEc------C
Q 008050 490 VIPAHSNLISQVKFEPQEGYFLVTG---SYDMTVKVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSH------D 559 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp~~~~~l~sg---s~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~------D 559 (579)
.+. ....+.+.|+|. |.+++.+ |..|.+.++|.....+...- ..|. ..+.+.|.|.|+|++|++. |
T Consensus 489 ~~d--k~~~N~vfwsPk-G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d 564 (698)
T KOG2314|consen 489 ELD--KKFANTVFWSPK-GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVD 564 (698)
T ss_pred hhc--ccccceEEEcCC-CcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccc
Confidence 332 345678999997 5666554 45789999998742222221 1233 4678899999999999885 4
Q ss_pred CeEEEEEcCC
Q 008050 560 RWIKLWSTRN 569 (579)
Q Consensus 560 g~I~iW~~~~ 569 (579)
.--+||++..
T Consensus 565 ~GYri~tfqG 574 (698)
T KOG2314|consen 565 NGYRIFTFQG 574 (698)
T ss_pred cceEEEEeec
Confidence 4577888754
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=7.2e-08 Score=94.87 Aligned_cols=263 Identities=15% Similarity=0.197 Sum_probs=172.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCC--CeeE--EEEeCCCCCeEEEEEccCCCEEEEEeCC-CcEEEE
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLS---GVVKIWSMPR--LQKF--SALKGHTERATDVTFSPVSNHVATSSAD-RTARLW 355 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~d---g~I~iwd~~~--~~~~--~~l~~h~~~V~~l~~sp~~~~l~s~s~d-g~I~iw 355 (579)
.+....+-++|++++++|.++..+ |.|--|.++. |... ........+-+.+++++++++++++... |.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456678889999999999888654 7777777764 3332 2222223344889999999999998774 789998
Q ss_pred eCC--CC--eeEEEecccCC----------eEEEEEecCCCEEEEEeCC-CeEEEEECCCCcEEEEE---ecCCCCeEEE
Q 008050 356 NTD--GS--LLNTFQGHLDR----------LARMAFHPSGKYLGTTSFD-KTWRLWDVDTGVELLLQ---EGHSRSVYGI 417 (579)
Q Consensus 356 d~~--~~--~~~~~~~h~~~----------I~~l~~sp~~~~l~s~s~d-g~I~lwd~~~~~~~~~~---~~~~~~V~~l 417 (579)
-+. |. .......|.+. +-...+.|++++|++.+.. ..|.+|++..|...... ......-..|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 853 32 12223334444 7788999999999988753 57999999876543321 1334556789
Q ss_pred EEcCCCCEEEEEe-CCCeEEEEeCCCC-eEEEEEec---------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 008050 418 AFHPDGSLAASCG-LDALARVWDLRTG-RSILALEG---------HVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKR 485 (579)
Q Consensus 418 ~~spdg~~l~sg~-~dg~I~iwd~~~~-~~~~~~~~---------~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~ 485 (579)
.|||++++..+.+ .+++|.+|..... ..+..++. .......|.++++|++|+++. ....|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999776554 6999999998873 22222221 223467899999999999876 3347888876543
Q ss_pred -ceeE---EEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEEC--CCCeEEEEec-CCCCcEEEEEEc
Q 008050 486 -KSLY---VIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSG--RDFKLVKSLS-GHEAKVTSLDIH 547 (579)
Q Consensus 486 -~~~~---~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~--~~~~~~~~l~-~h~~~V~~l~~s 547 (579)
..+. ....+...-....|++. +.+|+++. .+..|.+|.. .+|++-.... .......|+.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 2222 22344455678889996 55555554 4567888864 4555443332 233445666654
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=3.6e-10 Score=109.45 Aligned_cols=250 Identities=19% Similarity=0.251 Sum_probs=186.0
Q ss_pred eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCe-e-EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 320 KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSL-L-NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 320 ~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~-~-~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
.+..+.||.+.|+....-|...-+++.+.|.+++||- .+... - .........++++.++.....|++|-.+|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4456788999999998888888999999999999997 33221 1 1222345678899999999999999999999988
Q ss_pred ECCC----CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 397 DVDT----GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 397 d~~~----~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs 472 (579)
.+.. .........|...+..+-|+-...++++.+.|..+.---.+++..+..+.-.. .-+++.|.-. +.+.|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCceeeE--EEEecc
Confidence 7643 33444556788999999999888899999988877554445544332221100 0111111111 556666
Q ss_pred CCCcEEEEEC--CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-EEEEecCCCCcEEEEEEcCC
Q 008050 473 EDNTCRIWDL--RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-LVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 473 ~Dg~I~iwDl--~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d 549 (579)
..|.|.+-.+ ..-..+.++.+|.+.+.+++|.+. ..+|++|..|..+.+||+-..+ ....+.+|...|..+..-+-
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 6676665543 345678889999999999999995 7899999999999999986554 34567889999999988888
Q ss_pred CCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 550 EQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
-+.+++++.||.|.+|+++....+
T Consensus 252 t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred heeeeeccCCCeEEEEeccceeec
Confidence 889999999999999999876543
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=4.2e-11 Score=121.70 Aligned_cols=240 Identities=18% Similarity=0.242 Sum_probs=171.5
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCe
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG--------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT 392 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~ 392 (579)
+..+.+|...|..+.--.+.+.+++++.|++|++|.+.. .+..+++.|+.+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456778999999988888888999999999999999532 2556788999999999999888887654 899
Q ss_pred EEEEECCCCcEEEEEe--cCCCCeEEEEEcC--CCCEEE-EEeCCCeEEEEeCCCCeEEEEEec-----CCCCeEEEEEc
Q 008050 393 WRLWDVDTGVELLLQE--GHSRSVYGIAFHP--DGSLAA-SCGLDALARVWDLRTGRSILALEG-----HVKPVLGISFS 462 (579)
Q Consensus 393 I~lwd~~~~~~~~~~~--~~~~~V~~l~~sp--dg~~l~-sg~~dg~I~iwd~~~~~~~~~~~~-----~~~~I~si~~s 462 (579)
|.+||.--+..+.... ...+.+..+..-+ +..+++ .++...+|+++|.+.+.....++. .+.-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987666554221 1122233333333 333444 447889999999999887666653 34558899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEE-EECCCCeEEEEecCCCCcE
Q 008050 463 PNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV-WSGRDFKLVKSLSGHEAKV 541 (579)
Q Consensus 463 p~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~i-wd~~~~~~~~~l~~h~~~V 541 (579)
+.|++++++-.+|+|.+.|.++|+.+..+..-......++- | +.+.|+....|.++.+ |...++......+....+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p-sdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 99999999999999999999999988877654444444443 3 3567888888899988 9877776665554332222
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 542 TSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 542 ~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
.-+ ..-|..|++......+.+|.
T Consensus 964 hfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 964 HFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhh--hccCceeEEeccCcEEEEEe
Confidence 211 11255566666666666664
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=2.7e-08 Score=114.20 Aligned_cols=278 Identities=12% Similarity=0.174 Sum_probs=186.5
Q ss_pred CCCeeEEEEcCCCCEEEEEec--CC--eEEEEeCCCCe---eEEEEe-----CCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSL--SG--VVKIWSMPRLQ---KFSALK-----GHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~--dg--~I~iwd~~~~~---~~~~l~-----~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
...+...+|....+.+.+... .. .|.+....... .+..+. ...+.|.++.|.++...++.+..+|.|.
T Consensus 21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~ 100 (928)
T PF04762_consen 21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDII 100 (928)
T ss_pred ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEE
Confidence 346777888877654443332 22 34444433222 333333 2456899999999999999999999999
Q ss_pred EE----eCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----------------------CcEEEE
Q 008050 354 LW----NTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-----------------------GVELLL 406 (579)
Q Consensus 354 iw----d~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-----------------------~~~~~~ 406 (579)
+. +.....+.....-...|.+++|+||+..|+..+.++++.+.+-.- |+.-..
T Consensus 101 ~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 101 LVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 99 666666666666778999999999999999999999888764310 111001
Q ss_pred Eec------------------------CCCCeEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCeEEEEEecCCCCe
Q 008050 407 QEG------------------------HSRSVYGIAFHPDGSLAASCGL---D---ALARVWDLRTGRSILALEGHVKPV 456 (579)
Q Consensus 407 ~~~------------------------~~~~V~~l~~spdg~~l~sg~~---d---g~I~iwd~~~~~~~~~~~~~~~~I 456 (579)
+.| +...-..|+|-.||.++++.+. . ..++||+- .|....+...-.+--
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe 259 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLE 259 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCcc
Confidence 100 2224567899999999998875 3 47999994 476555555444445
Q ss_pred EEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEeC----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe
Q 008050 457 LGISFSPNGYHLATGGE---DNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK 529 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~---Dg~I~iwDl~~~~~~~~~~~----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 529 (579)
.+++|-|.|++|++... ...|.+|. ++|-.-..|.. ....|..+.|+.+ +.+|+....|. |.+|...++.
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceEEEeeCCE
Confidence 67899999999998764 34577777 45544444433 3567899999997 77888766555 9999988876
Q ss_pred EE--EEecC-CCCcEEEEEEcCCC-CEEEEEEcCCeEEEEEc
Q 008050 530 LV--KSLSG-HEAKVTSLDIHPDE-QSIATVSHDRWIKLWST 567 (579)
Q Consensus 530 ~~--~~l~~-h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~~ 567 (579)
.. +.+.. ....+..+.|++.. ..|...+.+|.+..+++
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 33 23322 23345569999954 44777777677765544
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.20 E-value=6.2e-08 Score=98.71 Aligned_cols=237 Identities=12% Similarity=0.062 Sum_probs=153.4
Q ss_pred EcCCCCEEEEEec----------CCeEEEEeCCCCeeEEEEeCC-------CCCeEEEEEccCCCEEEEEe-C-CCcEEE
Q 008050 294 YSHDGNLLATSSL----------SGVVKIWSMPRLQKFSALKGH-------TERATDVTFSPVSNHVATSS-A-DRTARL 354 (579)
Q Consensus 294 ~spdg~~latgs~----------dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp~~~~l~s~s-~-dg~I~i 354 (579)
+||||+.|+++.. +..|.+||..+++.+..+..- ...-..++++++|++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 789999999999999888742 22345789999999998776 3 689999
Q ss_pred EeCCCC-eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-----EEecCCCCeEE-EEEcC-CCCEE
Q 008050 355 WNTDGS-LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-----LQEGHSRSVYG-IAFHP-DGSLA 426 (579)
Q Consensus 355 wd~~~~-~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-----~~~~~~~~V~~-l~~sp-dg~~l 426 (579)
.|+..+ .+..+.- .+...-...+.+. +.+.+.||......+.+..... .+......+.. -.|.+ +|.++
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 996654 4444443 2221222222222 1233345555444433221111 11110000000 03345 78777
Q ss_pred EEEeCCCeEEEEeCCCC-----eEEEEEec-------CCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCC
Q 008050 427 ASCGLDALARVWDLRTG-----RSILALEG-------HVKPVLGISFSPNGYHLATGG----------EDNTCRIWDLRK 484 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~-----~~~~~~~~-------~~~~I~si~~sp~g~~l~tgs----------~Dg~I~iwDl~~ 484 (579)
+.... |.|.+.|+... ..+..+.. ..+.+.-++++++++.+++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 99999996443 22322221 223344599999999888843 225799999999
Q ss_pred CceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEec
Q 008050 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 485 ~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~ 535 (579)
++.+..+... ..+..+.+++++..+|++.+ .++.|.++|..+++.+.++.
T Consensus 289 ~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 289 GKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9999998863 57889999998652555444 68899999999999998883
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.19 E-value=7.8e-08 Score=94.69 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=149.1
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCcEEEEEec-
Q 008050 333 DVTFSP-VSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFH-PSGKYLGTTSFDKTWRLWDVDTGVELLLQEG- 409 (579)
Q Consensus 333 ~l~~sp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~s-p~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~- 409 (579)
++.|.+ ++.++++-...+.|..|+..+.....+.... ...+.+. ++ ..|+++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 578888 6666666667899999998887766655444 6788888 55 5556665544 45559998866554433
Q ss_pred ----CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc
Q 008050 410 ----HSRSVYGIAFHPDGSLAASCGLD--------ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLA-TGGEDNT 476 (579)
Q Consensus 410 ----~~~~V~~l~~spdg~~l~sg~~d--------g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~-tgs~Dg~ 476 (579)
.....+.+++.++|++.++.... |.|..++.. ++...... .....+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34568899999999977776543 567777776 55443333 345578999999998776 4557788
Q ss_pred EEEEECCCCce-------eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc-C
Q 008050 477 CRIWDLRKRKS-------LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH-P 548 (579)
Q Consensus 477 I~iwDl~~~~~-------~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s-~ 548 (579)
|..|++..... +..+....+....++++.+ +++.++....+.|.+++.. ++.+..+......+++++|. +
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 99999863221 1122222234788999986 7777777789999999976 88888887665689999994 6
Q ss_pred CCCEEEEEE
Q 008050 549 DEQSIATVS 557 (579)
Q Consensus 549 dg~~L~s~s 557 (579)
+.+.|+..+
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 666665543
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.1e-09 Score=108.32 Aligned_cols=248 Identities=19% Similarity=0.280 Sum_probs=166.0
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC--EEEE-----EeCCCcEEEEeCCCCee
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN--HVAT-----SSADRTARLWNTDGSLL 362 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~s-----~s~dg~I~iwd~~~~~~ 362 (579)
.+..|+.|..+.+- -..+.+++|+..+.+.+.. +-|...|+.+.++|.+. .+++ .|.-+.|+||.......
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 46778887655432 2367899999887544433 34788999999999743 3433 34456899998542111
Q ss_pred EE----EecccCCeEEEEEecCCC-EEEEEe--CC---------CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 363 NT----FQGHLDRLARMAFHPSGK-YLGTTS--FD---------KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 363 ~~----~~~h~~~I~~l~~sp~~~-~l~s~s--~d---------g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
.. -.-....-..+.|++-|. +|+.++ .| .+++++++. |....+.....++|+++.|+++|+-+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEE
Confidence 11 111122235677888776 333332 23 478888887 44444444567899999999999755
Q ss_pred E--EEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEeCCCCCeEEE
Q 008050 427 A--SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE---DNTCRIWDLRKRKSLYVIPAHSNLISQV 501 (579)
Q Consensus 427 ~--sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~---Dg~I~iwDl~~~~~~~~~~~~~~~V~~v 501 (579)
+ .|-.-..+.|||++ +..+..+ ..++-+++-|+|.|++|+.++. -|.|-|||..+.+++..+.... .+-+
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~ 360 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVF 360 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEE
Confidence 4 45677899999986 4444444 4566788999999999998885 4789999999998888887644 3558
Q ss_pred EEeeCCCeEEEEEEC------CCEEEEEECCCCeEEEEecCCCCcEEEEEEcC
Q 008050 502 KFEPQEGYFLVTGSY------DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 548 (579)
.|+|+ |.+|++++. |+.++||+. +|..+..-.-.. ....+.|-|
T Consensus 361 eW~Pd-Ge~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 361 EWSPD-GEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred EEcCC-CcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 89997 566666553 688999996 455554332111 466777765
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2.2e-09 Score=112.55 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=181.5
Q ss_pred hhcceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe--CCCCCeEEEEEccCCCEEEEEeC
Q 008050 271 KKVESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK--GHTERATDVTFSPVSNHVATSSA 348 (579)
Q Consensus 271 ~~~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp~~~~l~s~s~ 348 (579)
.....+....++.||...|.-+.|+.+.+.|-+...+|.|.||-+-++.-...+. ...+.|.+++|+.+|..++..-.
T Consensus 56 aa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 56 AAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred ccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence 3455666777889999999999999999999999999999999987765443322 24567899999999999999999
Q ss_pred CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE-------E----EEecCCCCeEEE
Q 008050 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL-------L----LQEGHSRSVYGI 417 (579)
Q Consensus 349 dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~-------~----~~~~~~~~V~~l 417 (579)
||.|.+=.++|..+..-.-...-...+.|++|.+.++.+-.+|.+.+||....-.. . .+......|..+
T Consensus 136 DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred cCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence 99999888887655433322333457899999999999999999999998653211 1 111222335566
Q ss_pred EEc--------CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 008050 418 AFH--------PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---------NTCRIW 480 (579)
Q Consensus 418 ~~s--------pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---------g~I~iw 480 (579)
.|. ||...|+++..+|.+.|..-.+...-..+... ..|..+.|+++|..|++++.+ +.|.+|
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 664 46678999999999988765444333333322 458899999999999999854 256666
Q ss_pred ECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 481 DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 481 Dl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
.. -|+.+.+++.....|++++|... |-.++. .-|+.|++=++
T Consensus 295 sp-~G~i~gtlkvpg~~It~lsWEg~-gLriA~-AvdsfiyfanI 336 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVPGSCITGLSWEGT-GLRIAI-AVDSFIYFANI 336 (1189)
T ss_pred cc-chhheEEEecCCceeeeeEEcCC-ceEEEE-EecceEEEEee
Confidence 53 57888888888899999999853 333332 23555554443
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.8e-11 Score=130.34 Aligned_cols=263 Identities=21% Similarity=0.263 Sum_probs=188.6
Q ss_pred EEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC--cEE
Q 008050 276 LYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR--TAR 353 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg--~I~ 353 (579)
|.-..+...|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|...|+.+.=+.+|..+++.+.-. ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 334455567889999999999999999999999999999999999999999999999999999998877665533 577
Q ss_pred EEeCCC--CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCCeEEEEEcCCCCEEE
Q 008050 354 LWNTDG--SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE----GHSRSVYGIAFHPDGSLAA 427 (579)
Q Consensus 354 iwd~~~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~----~~~~~V~~l~~spdg~~l~ 427 (579)
+|+... ...+.+.+ -.++.|+.....-+.|+......+||+.++..+.++. +....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 898543 33444433 3678888776666677777889999999987665422 2222336788999988877
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCC
Q 008050 428 SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~ 507 (579)
- || .+||+|..+.+..|..... -..-.|+|+|..++..+. |||+|+.+.++....-. -+.+.|+..
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNst- 1312 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNST- 1312 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccC-
Confidence 3 44 5899999888777765442 223459999999998765 89999998888765432 245677765
Q ss_pred CeEEEEEE------CC-----------CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 508 GYFLVTGS------YD-----------MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 508 ~~~l~sgs------~d-----------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
|.+++..- .| ...+-|+..+...+.++.+. ..|..++-++...+|+..-
T Consensus 1313 G~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1313 GDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEEEe
Confidence 44433221 00 12455555566666666543 3467777777777776654
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=8.3e-10 Score=105.48 Aligned_cols=237 Identities=20% Similarity=0.384 Sum_probs=164.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-----eEEEEeCCC------------CCeEEEEEccCC--CEEEE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-----KFSALKGHT------------ERATDVTFSPVS--NHVAT 345 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~sp~~--~~l~s 345 (579)
....|+++.|...|.||++|...|.|.+|.-.... ....+++|. ..|..|.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999865432 233355553 358889998765 45777
Q ss_pred EeCCCcEEEEeCCCCe--------------------e-----------------------EEE-ecccCCeEEEEEecCC
Q 008050 346 SSADRTARLWNTDGSL--------------------L-----------------------NTF-QGHLDRLARMAFHPSG 381 (579)
Q Consensus 346 ~s~dg~I~iwd~~~~~--------------------~-----------------------~~~-~~h~~~I~~l~~sp~~ 381 (579)
.+.|.+|++|.+-.+. + ..+ ..|..-|+++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999842210 0 001 2355667888898887
Q ss_pred CEEEEEeCCCeEEEEECCCCc---EEEEEecCC-----CCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEE------
Q 008050 382 KYLGTTSFDKTWRLWDVDTGV---ELLLQEGHS-----RSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSI------ 446 (579)
Q Consensus 382 ~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~-----~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~------ 446 (579)
..++++ .|-.|.+|+++-.. .+.-...|. .-|++..|+|. .+.+...+..|.|++.|+|.....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 776665 57789999986432 222333443 24788899994 457777888999999999954221
Q ss_pred E----------EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeCCC------------CCe---EE
Q 008050 447 L----------ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-RKSLYVIPAHS------------NLI---SQ 500 (579)
Q Consensus 447 ~----------~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~------------~~V---~~ 500 (579)
. -+.+-...|..+.|+++|++|++-+. .+|+|||.+. ..++.++..|. ..| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1 11223456888999999999988764 5799999986 45777776553 122 34
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEE
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
+.|+-+ ...+++|++.+..-+|-
T Consensus 343 isfSgd-~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGD-DKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCC-cccccccccccceeeec
Confidence 567765 56677888887777775
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.4e-09 Score=113.29 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=199.5
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC------------CEEEEEeCCCcEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS------------NHVATSSADRTAR 353 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~------------~~l~s~s~dg~I~ 353 (579)
...-.++.|++.| +||.|+ ...|.+-|..+.+.+..+..|...|+.+.|.|-. -.|+++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346778899865 677776 5678899999999999999999999999998731 2467777789999
Q ss_pred EEeC-CCCeeEEEecccCCeEEEEEecC---C-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEE
Q 008050 354 LWNT-DGSLLNTFQGHLDRLARMAFHPS---G-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAA 427 (579)
Q Consensus 354 iwd~-~~~~~~~~~~h~~~I~~l~~sp~---~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~ 427 (579)
+||. .+..+..++.|.+.+..++|-+. . ..|++.....++.+|+..+|+....+........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9994 45566778888999999999763 3 4677777889999999999999888766666778899999 666777
Q ss_pred EEeCCCeEEEEeCCC-------CeEEEEEecCCC------------C-------------eEEEEEcCCCCEEEEEeCCC
Q 008050 428 SCGLDALARVWDLRT-------GRSILALEGHVK------------P-------------VLGISFSPNGYHLATGGEDN 475 (579)
Q Consensus 428 sg~~dg~I~iwd~~~-------~~~~~~~~~~~~------------~-------------I~si~~sp~g~~l~tgs~Dg 475 (579)
.-+..|.+.+.+.-. |+..+.-..|.. . ...++|+|.-+.++......
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 777888888776532 233322222221 0 11256777554455555667
Q ss_pred cEEEEECCCCceeEEEeCCCCCeEEEEEeeCC-CeEEEEEECCCEEEEEECCCCe----------------EEEEecC-C
Q 008050 476 TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGRDFK----------------LVKSLSG-H 537 (579)
Q Consensus 476 ~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~-~~~l~sgs~dg~I~iwd~~~~~----------------~~~~l~~-h 537 (579)
.+.|+|+.-..++..+....+.+.-+.|-|+. ...|++.-.||.+.+|-.+... .+..+.. .
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~ 332 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME 332 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech
Confidence 89999999999999988888877778887763 3478888999999999754321 1111110 0
Q ss_pred CCcEEEEEEcCC-CCEEEEEEcCCeEEEEEcCCCC
Q 008050 538 EAKVTSLDIHPD-EQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 538 ~~~V~~l~~s~d-g~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+-.+......|. ...++.--.+|.+.+|.+.++.
T Consensus 333 ~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 333 EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred hcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 111222223343 3334444467889999998654
No 285
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=99.17 E-value=3.7e-11 Score=81.54 Aligned_cols=36 Identities=58% Similarity=0.893 Sum_probs=34.3
Q ss_pred CChHHHHHHHHhcCCCeEecCCchhhhhHHHHHHHH
Q 008050 148 TNDMAVRARLRRLGEPITFFGEREMERRDRLRMLMA 183 (579)
Q Consensus 148 ~~d~~v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l~ 183 (579)
|.|.+|+++||+||||||||||+..+||+||++++.
T Consensus 1 ~~d~eV~~~LR~lgePi~lFGE~~~~Rr~RL~~ll~ 36 (44)
T smart00500 1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLI 36 (44)
T ss_pred CCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999999999986
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=8.1e-09 Score=97.09 Aligned_cols=231 Identities=15% Similarity=0.097 Sum_probs=158.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC--eeEEEecccCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeE
Q 008050 339 VSNHVATSSADRTARLWNTDGS--LLNTFQGHLDRLARMAFH-PSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVY 415 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~~~~--~~~~~~~h~~~I~~l~~s-p~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~ 415 (579)
...+|+.|+..|...+|....+ .+.....|...|+-+.=. -...-+..++.|.++++.+++.+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3468999999999999996543 233333344333222111 1223577788999999998876544333222223388
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCe-EE-E-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE---
Q 008050 416 GIAFHPDGSLAASCGLDALARVWDLRTGR-SI-L-ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY--- 489 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~dg~I~iwd~~~~~-~~-~-~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~--- 489 (579)
++.+++|++++++.+....|..|.+.... .+ . ........-.+..|+.+...+|+++.||++.|||+|......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 99999999999999999999999887532 22 2 222333445688899999999999999999999999754332
Q ss_pred --EEeCCCCCeEEEEEeeCCC-eEEEEEECCCEEEEEECCCCeEEEEec-------CCCCc-EEEEEEcCCCCEEEEEEc
Q 008050 490 --VIPAHSNLISQVKFEPQEG-YFLVTGSYDMTVKVWSGRDFKLVKSLS-------GHEAK-VTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 490 --~~~~~~~~V~~v~~sp~~~-~~l~sgs~dg~I~iwd~~~~~~~~~l~-------~h~~~-V~~l~~s~dg~~L~s~s~ 558 (579)
+-..|.+.+..+.|++.+. .+|+..-.-+.+.+.|+++++-...+. .|... |+...|+.++..+.+.+.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 2235889999999997432 244444556789999999887554432 23333 888889988888777765
Q ss_pred CCeEEEEEcCCC
Q 008050 559 DRWIKLWSTRNK 570 (579)
Q Consensus 559 Dg~I~iW~~~~~ 570 (579)
+ .+.=|++.++
T Consensus 323 ~-~~ae~ni~sr 333 (344)
T KOG4532|consen 323 L-QGAEYNILSR 333 (344)
T ss_pred h-hhheeecccc
Confidence 5 3666776554
No 287
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=99.14 E-value=3.5e-11 Score=74.09 Aligned_cols=30 Identities=67% Similarity=1.153 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCeEecCCchhhhhHHHHHHH
Q 008050 153 VRARLRRLGEPITFFGEREMERRDRLRMLM 182 (579)
Q Consensus 153 v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l 182 (579)
|+++||+||||||+|||+..+||+||+.++
T Consensus 1 V~~~LR~lgePi~lFGE~~~~R~~RLr~l~ 30 (30)
T PF08799_consen 1 VRRRLRELGEPITLFGETDADRRERLRRLL 30 (30)
T ss_dssp HHHHHHHCT--SCETT--HHHHHHHHHHHH
T ss_pred ChHHHHhcCCChhhhCCChHHHHHHHHHhC
Confidence 789999999999999999999999999874
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.13 E-value=7.7e-08 Score=92.03 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=130.2
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCC--eeEEEEe---CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 008050 292 CSYSHDGNLLATSSLSGVVKIWSMPRL--QKFSALK---GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ 366 (579)
Q Consensus 292 ~~~spdg~~latgs~dg~I~iwd~~~~--~~~~~l~---~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 366 (579)
++.+.+|++||+-- |..|.|-...+. ..+...+ ...-.=.-++|+||+.+|+.+...|+|++||+.|..+..+.
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56778899888764 777777665431 1112222 22334578999999999999999999999998887666655
Q ss_pred cccC-------CeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 367 GHLD-------RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 367 ~h~~-------~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
.... .|..+.|.. .+.+ -.|+ ..|++-...|.++-|-
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~-----------------------------~~~s----~~ws---~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLE-----------------------------YKKS----AQWS---YELLVINYRGQLRSYL 125 (282)
T ss_pred cccccCCccccceeeeEeec-----------------------------cccc----cccc---eeEEEEeccceeeeEE
Confidence 4221 111111111 1110 1121 1233333344444443
Q ss_pred CC-----CCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEE
Q 008050 440 LR-----TGRSILALE---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL 511 (579)
Q Consensus 440 ~~-----~~~~~~~~~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l 511 (579)
+. ..+....|. .+...|.++.++|..++|++|+.... .++. -.+....+++-.+-.+..++.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEE
Confidence 31 112222222 23556888888888777777764321 0000 001112222222222222222
Q ss_pred EEEEC-CC------EEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 512 VTGSY-DM------TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 512 ~sgs~-dg------~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
.+.+. |+ +..+|.+-+.+...........|..|.+||||+.|++...+|.|.+|++.+-.......
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 11111 11 12333333333333333356779999999999999999999999999999876665544
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.11 E-value=6.3e-10 Score=119.63 Aligned_cols=272 Identities=16% Similarity=0.172 Sum_probs=178.8
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTE-RATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF 365 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 365 (579)
+.|.++.|.....++..|+..|.+.-+-....+....+..|.- .|..+.-.. ..+++.+. ..++---..|..+..+
T Consensus 55 G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~--~~i~~ls~-~alr~~~r~gl~~~~~ 131 (1118)
T KOG1275|consen 55 GTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTE--SGIFTLSK-TALRATTRQGLPVFDF 131 (1118)
T ss_pred ccccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhh--hhheeeeH-HHhhhhhccCceeecc
Confidence 3788888888888888888877766544443333333332221 111111111 11111111 1111000011111111
Q ss_pred eccc--CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 366 QGHL--DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 366 ~~h~--~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
.... .-...+ +-++..++.|+....+..+|+++.+......-..+.|+-+.. +++++++|...|+|.+-|.++.
T Consensus 132 ~~~s~~~M~~~~--~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~ 207 (1118)
T KOG1275|consen 132 TCPSMTKMASSL--HMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF 207 (1118)
T ss_pred cCCCHHHHHHHh--ccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC
Confidence 1100 000111 114567888888889999999998887776554545555544 5789999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 444 RSILALEGHVKPVLGISFSPNGYHLATGGE---------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 444 ~~~~~~~~~~~~I~si~~sp~g~~l~tgs~---------Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
+.+.++..|.+.|..+.. .|+.|++++. |..|+|||+|..+.+.-+..+.++ .-+.|+|.-...++++
T Consensus 208 ~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~ 284 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT 284 (1118)
T ss_pred ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE
Confidence 999999999999877665 6779998874 557899999998887777666554 4578888767788888
Q ss_pred ECCCEEEEEECC---CC-eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 515 SYDMTVKVWSGR---DF-KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 515 s~dg~I~iwd~~---~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+..|...+-|.. +. .-+..+....+.+.++++|++|+.|+.|..+|.|.+|.-.
T Consensus 285 S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 285 SQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 999999999833 22 1233333345569999999999999999999999999843
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=3.8e-08 Score=104.12 Aligned_cols=199 Identities=9% Similarity=-0.049 Sum_probs=132.6
Q ss_pred CeeEEEEcCCCCE-EEEEecC---CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCC--CcEEEEeCCCC
Q 008050 288 PLSGCSYSHDGNL-LATSSLS---GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SAD--RTARLWNTDGS 360 (579)
Q Consensus 288 ~I~~~~~spdg~~-latgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~d--g~I~iwd~~~~ 360 (579)
.+..-.|+|||+. ++..+.+ ..|+++|+.+++...... ..+......|+|||+.|+.. +.+ ..|.+++..+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678899999984 6654433 569999998876654433 55667778899999877654 333 46777787777
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCC-C--eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFD-K--TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD----- 432 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d----- 432 (579)
....+..+........|+|||+.|+..+.. + .|+++|+.++......... . ....|+|||+.|+.....
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~--~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K--NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--cCceECCCCCEEEEEEcCCCccc
Confidence 666666555444566899999987776643 2 6888899887764443221 1 124899999988776643
Q ss_pred ----CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeC
Q 008050 433 ----ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN---TCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 433 ----g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg---~I~iwDl~~~~~~~~~~~ 493 (579)
..|.+.|+.++... .+... .......|+|||+.|+..+.++ .+.++++. +.....+..
T Consensus 345 ~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~ 409 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPL 409 (419)
T ss_pred CCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeec
Confidence 36888898887643 33322 2234688999999887766432 36667774 333333433
No 291
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=99.10 E-value=7.5e-11 Score=87.44 Aligned_cols=57 Identities=26% Similarity=0.248 Sum_probs=51.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhcccCCCCChHH--HHHHHHhcCCCeEecCCchhhhhHHHHHHHHhc
Q 008050 115 YEISEESRQVRERQEKAKQDLLMKRRAAVLAVPTNDMA--VRARLRRLGEPITFFGEREMERRDRLRMLMAKL 185 (579)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~d~~--v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l~~~ 185 (579)
..|++||++.+.+.|+||++|+..|||+++++|++|++ |++||. ++||.+|+.|+++
T Consensus 11 ~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~--------------kErd~ar~~l~~l 69 (70)
T PF08606_consen 11 STLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLL--------------KERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------HhHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999 777776 5899999998854
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.10 E-value=8.7e-08 Score=101.24 Aligned_cols=270 Identities=13% Similarity=0.012 Sum_probs=171.9
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC-Ce----------EEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTE-RA----------TDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~-~V----------~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~ 365 (579)
+..+++++.+|.+.-+|..+++.+........ .+ ..+.. .+..++.++.+|.+..+|. +++.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 66888888899999999999998877653221 00 00111 3567788889999999995 56665555
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEE-EEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYG-IAFHP--DGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~-l~~sp--dg~~l~sg~~dg~I~iwd~~~ 442 (579)
...........+ .+..+++++.++.+..+|..+|+.+.........+.. ...+| .+..++.++.+|.+..+|..+
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 433221111122 2456778888999999999999988776532111100 00111 123577788899999999999
Q ss_pred CeEEEEEecCCC-------CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 443 GRSILALEGHVK-------PVLGISFSP--NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 443 ~~~~~~~~~~~~-------~I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
|+.+........ ....+..+| .+..+++++.+|.+..+|..+++.+....... ...+... +..++.
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~~~---~~~vy~ 299 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFAVD---GGRIYL 299 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcEEE---CCEEEE
Confidence 987665432110 011111222 34567778889999999999998887654321 1222332 345666
Q ss_pred EECCCEEEEEECCCCeEEEEecCCC-CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 514 GSYDMTVKVWSGRDFKLVKSLSGHE-AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
++.+|.+..+|..+++.+....... ....+..+. +.+|+.++.||.|.++|..+++.....++
T Consensus 300 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 300 VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred EcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 7789999999999998766543211 112222232 56788899999999999999887665543
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.10 E-value=1.2e-07 Score=92.62 Aligned_cols=219 Identities=16% Similarity=0.063 Sum_probs=145.0
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEE--EccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCE
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVT--FSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKY 383 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~--~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~ 383 (579)
+|.|..||..+++.+.....-. .+.... ...++..+++++.++.|..||. +++.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999998876411 122222 3335678888899999999996 6776666654 22222212 224567
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEE-ecCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC----
Q 008050 384 LGTTSFDKTWRLWDVDTGVELLLQ-EGHS---RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKP---- 455 (579)
Q Consensus 384 l~s~s~dg~I~lwd~~~~~~~~~~-~~~~---~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~---- 455 (579)
+++++.++.++.+|..+|+.+... .... ..........++..++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778899999999999998873 3321 11222233334778888888999999999999998888764422
Q ss_pred ------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe
Q 008050 456 ------VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK 529 (579)
Q Consensus 456 ------I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 529 (579)
+.+-.+..++ .++.++.++.+..+|+.+++.+..... ..+..+ .... +..|++++.++.|..||+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~--~~~~~~-~~~~-~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI--SGIYSL-PSVD-GGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS--S-ECEC-EECC-CTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC--CCccCC-ceee-CCEEEEEeCCCEEEEEECCCCC
Confidence 1222233345 777777788644449999997764442 223321 2343 4556666689999999999998
Q ss_pred EEEE
Q 008050 530 LVKS 533 (579)
Q Consensus 530 ~~~~ 533 (579)
.+..
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 7653
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.10 E-value=6.5e-08 Score=102.21 Aligned_cols=257 Identities=14% Similarity=0.064 Sum_probs=165.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCe----
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRL---- 372 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I---- 372 (579)
+..++.++.+|.++.+|..+++.+...........+... .+..+++++.+|.+.-+|. +++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 556777888999999999999988876643221111111 2456777888999999995 566665554321110
Q ss_pred -EEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 008050 373 -ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR-------SVYGIAFHP--DGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 373 -~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-------~V~~l~~sp--dg~~l~sg~~dg~I~iwd~~~ 442 (579)
..-.. .+..++.++.+|.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+
T Consensus 198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 11111 134577788899999999999887655421110 011111222 244677778899999999999
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-CCeEEEEEeeCCCeEEEEEECCCEEE
Q 008050 443 GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-NLISQVKFEPQEGYFLVTGSYDMTVK 521 (579)
Q Consensus 443 ~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-~~V~~v~~sp~~~~~l~sgs~dg~I~ 521 (579)
|+.+...... ....+.. .+..|+.++.+|.+..+|..+++.+....... ....+..+. +.+|+.++.+|.|+
T Consensus 276 G~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~ 348 (394)
T PRK11138 276 GQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLH 348 (394)
T ss_pred CCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEE
Confidence 9887655421 1112222 45678888899999999999998776543211 122223332 34567788999999
Q ss_pred EEECCCCeEEEEecCCCCcEEE-EEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 522 VWSGRDFKLVKSLSGHEAKVTS-LDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 522 iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
++|..+++.+.....+...+.+ ..+. +..|+.++.||.|+.++.
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 9999999998877644333332 2232 457888999999998875
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=2.7e-09 Score=102.06 Aligned_cols=240 Identities=19% Similarity=0.338 Sum_probs=168.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC------CeeEEEeccc------------CCeEEEEEecCCC--EEEE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDG------SLLNTFQGHL------------DRLARMAFHPSGK--YLGT 386 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~------~~~~~~~~h~------------~~I~~l~~sp~~~--~l~s 386 (579)
....|+++.|...|.+|++|...|.|.+|..+. +....+++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 446799999999999999999999999998432 2233455554 3577788876543 7888
Q ss_pred EeCCCeEEEEECCCCcE-------------------------------------E-----EEE-ecCCCCeEEEEEcCCC
Q 008050 387 TSFDKTWRLWDVDTGVE-------------------------------------L-----LLQ-EGHSRSVYGIAFHPDG 423 (579)
Q Consensus 387 ~s~dg~I~lwd~~~~~~-------------------------------------~-----~~~-~~~~~~V~~l~~spdg 423 (579)
.+.|.+|++|-+..... + ..+ ..|...++++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998743200 0 011 3466668899999988
Q ss_pred CEEEEEeCCCeEEEEeCCCCe---EEEEEecCCC-----CeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce------e
Q 008050 424 SLAASCGLDALARVWDLRTGR---SILALEGHVK-----PVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKS------L 488 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~---~~~~~~~~~~-----~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~------~ 488 (579)
..++++ .|-.|.+|++.-.. .+..++.|.. -|++..|+| ....+...+..|.|++-|+|.... +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877766 47889999986432 3344455542 488899999 456777778899999999984321 1
Q ss_pred EE--E--------eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-eEEEEecCCC------------CcE---E
Q 008050 489 YV--I--------PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-KLVKSLSGHE------------AKV---T 542 (579)
Q Consensus 489 ~~--~--------~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-~~~~~l~~h~------------~~V---~ 542 (579)
.. + ..-...|+.+.|++. |+|+++-++ .+|++||.+.. .++.++.-|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~n-gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDN-GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCC-CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 1 111245788999985 888887654 57999998754 4666664442 223 4
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 543 SLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 543 ~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
.+.||.|.+.+.+|+.....-||-..+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecCCcccccccccccceeeecccc
Confidence 577898999999999988888887544
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.08 E-value=5.3e-07 Score=88.77 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=147.1
Q ss_pred EEEEcC-CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCeeEEEec-
Q 008050 291 GCSYSH-DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS-PVSNHVATSSADRTARLWNTDGSLLNTFQG- 367 (579)
Q Consensus 291 ~~~~sp-dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s-p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~- 367 (579)
+.+|.+ ++.++++....+.|+.|+..++.... +.... ...+.+. ++ ..|+.+...+ +.++|.....+..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 567887 77788887789999999998876644 22222 6777777 55 5555565544 5556866654443332
Q ss_pred -----ccCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCC
Q 008050 368 -----HLDRLARMAFHPSGKYLGTTSFD--------KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA-SCGLDA 433 (579)
Q Consensus 368 -----h~~~I~~l~~sp~~~~l~s~s~d--------g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~-sg~~dg 433 (579)
.....+.+++.++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34567899999999977765543 568888887 55444333 345678999999998665 566788
Q ss_pred eEEEEeCCCCeE-------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEe-e
Q 008050 434 LARVWDLRTGRS-------ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE-P 505 (579)
Q Consensus 434 ~I~iwd~~~~~~-------~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~s-p 505 (579)
.|..|++..... ...+....+..-.+++..+|++.++....+.|.++|.. ++.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 999999863221 11222222347889999999988888889999999986 88888888776689999995 4
Q ss_pred CCCeEEEEE
Q 008050 506 QEGYFLVTG 514 (579)
Q Consensus 506 ~~~~~l~sg 514 (579)
+...++++.
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 445555554
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=1.7e-08 Score=94.92 Aligned_cols=212 Identities=14% Similarity=0.065 Sum_probs=147.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCee-EEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEe-cccCCeE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQK-FSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTDGSLLNTFQ-GHLDRLA 373 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~-~h~~~I~ 373 (579)
...+|+.|+..|.+.+|...+.+. ......|...|+-+.-..+ .--+..++.|.++++.++++....... ...-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 457899999999999999885543 3333445544433222212 234677888999999987665433221 1113378
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE--
Q 008050 374 RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL---LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA-- 448 (579)
Q Consensus 374 ~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~---~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~-- 448 (579)
++.++++++++++.+....|.+|.+....... ........-.+..|+.....++++..||++.|||+|.....+.
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 99999999999999999999999987653322 2223445567889999999999999999999999997654322
Q ss_pred ---EecCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEeCC-------C-CCeEEEEEeeCCC
Q 008050 449 ---LEGHVKPVLGISFSPNG--YHLATGGEDNTCRIWDLRKRKSLYVIPAH-------S-NLISQVKFEPQEG 508 (579)
Q Consensus 449 ---~~~~~~~I~si~~sp~g--~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-------~-~~V~~v~~sp~~~ 508 (579)
-..|.+.+..+.|++.| .+|+..-.-+.+.+.|+|+++....+... . ..|....|+.++.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 23588999999999855 35666556778999999998766555332 1 2255566665433
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.2e-07 Score=98.35 Aligned_cols=192 Identities=10% Similarity=-0.048 Sum_probs=125.0
Q ss_pred CeEEEEEccCCCE-EEEEeCC---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEe-C--CCeEEEEECCCCc
Q 008050 330 RATDVTFSPVSNH-VATSSAD---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTS-F--DKTWRLWDVDTGV 402 (579)
Q Consensus 330 ~V~~l~~sp~~~~-l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~--dg~I~lwd~~~~~ 402 (579)
.+....|+|+|+. ++..+.+ ..|.++|+.+.....+....+......|+|||+.++... . +..|+++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7788999999985 6654443 468888887766666655666667788999998776543 2 3578888988876
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----
Q 008050 403 ELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA--LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED----- 474 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D----- 474 (579)
..... .+........|+|||+.|+..+. .| .|.++|+.+++....... .. ....|+|+|++|+..+..
T Consensus 269 ~~~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 LTQIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEEcc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCccc
Confidence 54433 33333345689999987766553 33 688888887766333221 11 124899999998877643
Q ss_pred ----CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC--EEEEEECCC
Q 008050 475 ----NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM--TVKVWSGRD 527 (579)
Q Consensus 475 ----g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~ 527 (579)
..|.+.|+.++.. ..+... .......|+|++..++++....+ .+.++++..
T Consensus 345 ~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889877754 333332 23335889998555555543333 355666644
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.02 E-value=3.2e-09 Score=99.39 Aligned_cols=251 Identities=20% Similarity=0.243 Sum_probs=145.3
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCee------------EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK------------FSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~------------~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
|+.+.|+-+ ..|+++..++.+..+...++.+ .+.+..|.+.-.+-..+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 444444433 3455555565555554433222 222333333322222333457799999999999998
Q ss_pred CCCC--eeEEEecccCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEE
Q 008050 357 TDGS--LLNTFQGHLDRLARMAFHPSGKYLGTTSF-----DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD-GSLAAS 428 (579)
Q Consensus 357 ~~~~--~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-----dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd-g~~l~s 428 (579)
.+.- ....+......-.+.++...++.+.++.. -+..+.|+++..+.+.........|.+++-+|. .+++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 5541 11111111111122333334555544332 245666776655444433333445999999995 457888
Q ss_pred EeCCCeEEEEeCCCCeE-EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeC
Q 008050 429 CGLDALARVWDLRTGRS-ILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~-~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~ 506 (579)
|+.||.+.+||.++... ...++.|..+|..+-|+| ++..|+++++||.+.-||..+ +.+. .++.
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~-------------i~~~ 263 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS-------------ISNQ 263 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE-------------ecCc
Confidence 99999999999998753 345678999999999999 788999999999999999754 2221 1111
Q ss_pred CCeEEEEEECCCEEEEEEC----CCCeEEE-EecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 507 EGYFLVTGSYDMTVKVWSG----RDFKLVK-SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~----~~~~~~~-~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
...+..|=. ++.-.+. .+......|+++++. |..|++|+.-+.|++++
T Consensus 264 ----------~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 264 ----------ASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ----------cccccccccCCcccceEeeeccccccceeeeeeecc--CceEEeccccceEEEec
Confidence 011222310 1100111 112223346666665 77899999889998875
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=1.9e-07 Score=91.17 Aligned_cols=216 Identities=18% Similarity=0.082 Sum_probs=142.4
Q ss_pred CCcEEEEeC-CCCeeEEEecccCCeEEEE--EecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 349 DRTARLWNT-DGSLLNTFQGHLDRLARMA--FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 349 dg~I~iwd~-~~~~~~~~~~h~~~I~~l~--~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
+|.|..||. +++.+....... .+.... ...++.++++++.++.|+.||..+|+.+..+... ..+..... .++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ecccc
Confidence 678888996 666666664311 122112 3335778888899999999999999988877652 22211112 23446
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEE-ecCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCe---
Q 008050 426 AASCGLDALARVWDLRTGRSILAL-EGHV---KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI--- 498 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~~~~~~-~~~~---~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V--- 498 (579)
+++++.++.+..+|..+|+.+... .... ...........+..++++..++.|..+|+++|+.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 677778889999999999998884 3221 111222222247788888889999999999999998887644221
Q ss_pred --------EEEEEeeCCCeEEEEEECCCE-EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 499 --------SQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 499 --------~~v~~sp~~~~~l~sgs~dg~-I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
..+.+. ++ .++.++.+|. +.+ |+.+++.+.... ...+..+ ...++..|+.++.++.|..||+.+
T Consensus 159 ~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 159 ISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred eeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence 222222 34 5556666775 555 999999765433 2223332 345678888888999999999999
Q ss_pred CCccc
Q 008050 570 KGDEH 574 (579)
Q Consensus 570 ~~~~~ 574 (579)
++...
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 87654
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=5.4e-08 Score=103.34 Aligned_cols=241 Identities=12% Similarity=0.174 Sum_probs=180.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCC------------CEEEEEeCCCeE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSG------------KYLGTTSFDKTW 393 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~------------~~l~s~s~dg~I 393 (579)
|...-.++.|++.| +|+.|+. ..|.+-| ..-+.+..+..|...|+.+.|.|-. -.|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34446788999865 5666654 5677777 5667888899999999999998731 256677778999
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC-CCCEE
Q 008050 394 RLWDVDTGVELLLQEGHSRSVYGIAFHP---DG-SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP-NGYHL 468 (579)
Q Consensus 394 ~lwd~~~~~~~~~~~~~~~~V~~l~~sp---dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp-~g~~l 468 (579)
.+||...+..+..+..|.+++..++|-+ +. .+|+.-....++.+|+..+|+....+........|+.+.| +.+++
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 9999999988888888999999999876 33 3677777789999999999999988887777778899999 67777
Q ss_pred EEEeCCCcEEEEECCC-------CceeEEEeCCCC------------C-------------eEEEEEeeCCCeEEEEEEC
Q 008050 469 ATGGEDNTCRIWDLRK-------RKSLYVIPAHSN------------L-------------ISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 469 ~tgs~Dg~I~iwDl~~-------~~~~~~~~~~~~------------~-------------V~~v~~sp~~~~~l~sgs~ 516 (579)
...+..|.+.+.+.-. ++.++.-..|.. . ...++|+|.-.+.++. ..
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~ 250 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TF 250 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-Ee
Confidence 7777788887776532 233332222221 0 1234567754444443 45
Q ss_pred CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC--EEEEEEcCCeEEEEEcCCC
Q 008050 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ--SIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 517 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~--~L~s~s~Dg~I~iW~~~~~ 570 (579)
...+.++|+.-..++....-..+.+.-++|-|+++ .|+++-.||.+.||--+..
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 66799999998888888876677777788888765 5899999999999987663
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=1e-08 Score=101.72 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=110.2
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCe----eEEEecccCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCcEEE
Q 008050 333 DVTFSPVSNHVATSSADRTARLWNTDGSL----LNTFQGHLDRLARMAFHPSGKYLGTTSFDK---TWRLWDVDTGVELL 405 (579)
Q Consensus 333 ~l~~sp~~~~l~s~s~dg~I~iwd~~~~~----~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg---~I~lwd~~~~~~~~ 405 (579)
.+..++.+.+|+++..+....+++..+.. +.....-...-+.+.|..+.....++..-| .+.+|....+....
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 34456667777777777766666533222 111111222334555555555555554444 45555554443333
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
..||-+.++.++|+||+++|+++..|..|++-....-..+..| -||..-|..++..++ +.|++|+.|++|++||+++
T Consensus 147 -~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 -ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred -hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 3489999999999999999999999999999877665555554 469999999999865 4689999999999999999
Q ss_pred CceeEEEeC
Q 008050 485 RKSLYVIPA 493 (579)
Q Consensus 485 ~~~~~~~~~ 493 (579)
|+++.++..
T Consensus 225 gk~L~t~dl 233 (390)
T KOG3914|consen 225 GKLLDTCDL 233 (390)
T ss_pred CCcccccch
Confidence 999877654
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=2.6e-08 Score=98.88 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=113.0
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCe----eEEEEeCCCCCeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCee
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRLQ----KFSALKGHTERATDVTFSPVSNHVATSS---ADRTARLWNTDGSLL 362 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~sp~~~~l~s~s---~dg~I~iwd~~~~~~ 362 (579)
..+.+++++++||++..+....++++.... ..... .-...-+++.|..+......+. ....+.+|+......
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 344567788888888877776666654322 22221 1223334455554445444443 345566666554666
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
..+-+|.+.++.++|+||+++++++..|..|++-.......+.. ..||..-|..++..++. .|++|+.|++|++||++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecc
Confidence 67789999999999999999999999999999987765444433 34799999999988654 68999999999999999
Q ss_pred CCeEEEEEe
Q 008050 442 TGRSILALE 450 (579)
Q Consensus 442 ~~~~~~~~~ 450 (579)
+|+.+.++.
T Consensus 224 sgk~L~t~d 232 (390)
T KOG3914|consen 224 SGKLLDTCD 232 (390)
T ss_pred cCCcccccc
Confidence 999886664
No 304
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=1.8e-06 Score=87.38 Aligned_cols=214 Identities=13% Similarity=0.154 Sum_probs=154.7
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeeEEEecc-----cC----CeE---EEE-Eec-CCCEEEEEeCCCeEEEEECCCCc
Q 008050 337 SPVSNHVATSSADRTARLWNTDGSLLNTFQGH-----LD----RLA---RMA-FHP-SGKYLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 337 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h-----~~----~I~---~l~-~sp-~~~~l~s~s~dg~I~lwd~~~~~ 402 (579)
+.||+.++.. ..|.|.+||.+...+..+.-. .. .+. -+. |+. +|.+++..|. |...+.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 4567766553 458899999776655554321 00 000 011 222 5777777764 556666655554
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 403 ELLLQEGHSRSVYGIAFHPDGSLAASCGLDA-LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 403 ~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
.+.. ++.+.|.-..+..++.-++.|..|| .+-|||.++++. ..+...-+.|.++..+++|++++++.....|.++|
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 4433 6777888888888888999999999 999999988764 44555677899999999999999999989999999
Q ss_pred CCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC----CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 482 LRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD----MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 482 l~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
+.+++....-+...+.|+.+.|+|+ +.+++-+--+ ..|++||+.+++....- ...+.=.+-+|.||+++|.--+
T Consensus 430 idngnv~~idkS~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 9999877766667788999999996 7888876544 46999999887765433 2333335667899999887655
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=1.1e-08 Score=107.69 Aligned_cols=239 Identities=19% Similarity=0.320 Sum_probs=168.7
Q ss_pred eeEEEEcCCC--CEEEEEecCCeEEEEeCCC---CeeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCC--C
Q 008050 289 LSGCSYSHDG--NLLATSSLSGVVKIWSMPR---LQKFSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTDG--S 360 (579)
Q Consensus 289 I~~~~~spdg--~~latgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~--~ 360 (579)
|-.+.|++.. .+-++......-.+|++.. ......+.+|...|+.+.|+++. ..+++++.|-.+..||+.. .
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 4456677653 4555666667777898753 33445567899999999999865 5789999999999999654 4
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-EEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-ELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVW 438 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iw 438 (579)
.+..+..-......++|+.....+.+.+....|++||.+.|. .+...++|...|+.+.|.. ....+.+++.||+|+.|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 555555555566789999887788888889999999998764 5566778888999999886 34478899999999999
Q ss_pred eCCCCeEEEE-EecCCCCeEEEEEcC--CCCEEEEEeCCCcEEE---------EECCC-CceeEEEeCCCCCeEEEEEee
Q 008050 439 DLRTGRSILA-LEGHVKPVLGISFSP--NGYHLATGGEDNTCRI---------WDLRK-RKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 439 d~~~~~~~~~-~~~~~~~I~si~~sp--~g~~l~tgs~Dg~I~i---------wDl~~-~~~~~~~~~~~~~V~~v~~sp 505 (579)
|......... ......+|..-++.| +|.++.-.-.++.+-+ |+..+ .++++.|.+|...|....|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 9876533221 122344566666666 3333332222233333 33332 468899999998887666643
Q ss_pred C---------CCeEEEEEECCCEEEEEECCC
Q 008050 506 Q---------EGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 506 ~---------~~~~l~sgs~dg~I~iwd~~~ 527 (579)
. ....|++-+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2 235789999999999997653
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=5.5e-09 Score=101.41 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=124.2
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----eEEEEEecCCCCeEEEE
Q 008050 385 GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGIS 460 (579)
Q Consensus 385 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~I~si~ 460 (579)
++.+.+..|.+-|+++|...... ..+.|.++.|+..+++++.|+.+|.|..+|+|.+ ......-.|...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 66677888999999988655443 5678999999998999999999999999999975 22223334888899988
Q ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCce---eEEEeCCCCCeEEE--EEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe
Q 008050 461 FSP-NGYHLATGGEDNTCRIWDLRKRKS---LYVIPAHSNLISQV--KFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 461 ~sp-~g~~l~tgs~Dg~I~iwDl~~~~~---~~~~~~~~~~V~~v--~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 534 (579)
.-. ++.+|++.+.+|+|++||+|--++ +..+.+|.+.-.-+ ...+. ..++++++.|...+||.++.+.++.++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccCceeecc
Confidence 777 778999999999999999998777 88888886543332 33443 557778999999999999999999888
Q ss_pred cCCC----CcEEEEEEc
Q 008050 535 SGHE----AKVTSLDIH 547 (579)
Q Consensus 535 ~~h~----~~V~~l~~s 547 (579)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6432 235566654
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4e-08 Score=98.54 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=172.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC---CeeEEEEeCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR---LQKFSALKGHTERATDVTFSPVSNHVATSSA-DRTARLWNTDGS 360 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~~~~ 360 (579)
|..-|+.|.- ...+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++.++.+++. |..++++|+..-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 5556666543 3468999999999999998543 2344556678899999999999999999777 999999996542
Q ss_pred eeE-EEecccCCeEEEEEecCCC---EEEEE-eCCCeEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 361 LLN-TFQGHLDRLARMAFHPSGK---YLGTT-SFDKTWRLWDVDTGV--ELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 361 ~~~-~~~~h~~~I~~l~~sp~~~---~l~s~-s~dg~I~lwd~~~~~--~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
-.. .++...-+=.+-.+...|. .++++ -.++.+.++|-.... ......-|..+|.++.+++-+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 211 1111111111222222331 33333 346889999976543 3344557899999999999999999999999
Q ss_pred eEEEEeCCC------CeEE---------EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-----
Q 008050 434 LARVWDLRT------GRSI---------LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA----- 493 (579)
Q Consensus 434 ~I~iwd~~~------~~~~---------~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~----- 493 (579)
.|.-|.... .+.. ..+........++.|+|+|..+.+-+.|..|+++++++++.+..+..
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~ 246 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA 246 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence 999998762 1111 11222345578999999999999999999999999999876554421
Q ss_pred ---------------------------CC-CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec
Q 008050 494 ---------------------------HS-NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 494 ---------------------------~~-~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 535 (579)
|. ..-+.++|+.. +++|+-|+.=| |++.++.++.++..+.
T Consensus 247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes-~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES-GNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC-CCEEEeeccee-EEEEEeecCeEEEEec
Confidence 11 12345667764 77888777665 8999999988776653
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.7e-08 Score=98.74 Aligned_cols=244 Identities=17% Similarity=0.152 Sum_probs=176.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC----CeeEEEecccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDG----SLLNTFQGHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTG 401 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~ 401 (579)
|.+.|+.+.-. ..+++.+++.||.++.|.... +.+..+..|.+.|.+++.+.++-.+.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66667666543 458999999999999998444 345566778889999999999999999787 999999999876
Q ss_pred cEEEEEec--CCCCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 402 VELLLQEG--HSRSVYGIAFHPDG----SLAASCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSPNGYHLATGGE 473 (579)
Q Consensus 402 ~~~~~~~~--~~~~V~~l~~spdg----~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~g~~l~tgs~ 473 (579)
..+..+.. ..+.+ ++..+ .| .+-++.-.+|.+.++|-.... ....-+-|..+|..+.+++-+..+++...
T Consensus 87 DminmiKL~~lPg~a-~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFA-EWVTS-KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCce-EEecC-CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 55533221 12222 12222 23 233334468899999977543 34445678999999999999999999999
Q ss_pred CCcEEEEECCC------Cce---------eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec---
Q 008050 474 DNTCRIWDLRK------RKS---------LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS--- 535 (579)
Q Consensus 474 Dg~I~iwDl~~------~~~---------~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~--- 535 (579)
.|.|..|.... .+. ++.+.-......++.|+|+ +..+.+-+.|..|+++++++++++..+.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 99999998762 111 1122223456788999997 7778888899999999999987654332
Q ss_pred -----------------------------CCC-CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 536 -----------------------------GHE-AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 536 -----------------------------~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
.|. ..-+.+.|...|++|+-|+-=| |++.++.++.....
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 122 2236678999999999998777 99999988765543
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=6.7e-06 Score=81.21 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=153.4
Q ss_pred CeEEEEEcc-CCCEEEEEeCCC-cEEEEeC-CCCeeEEEecccCCe--EEEEEecCCCEEEEEeCC-----CeEEEEECC
Q 008050 330 RATDVTFSP-VSNHVATSSADR-TARLWNT-DGSLLNTFQGHLDRL--ARMAFHPSGKYLGTTSFD-----KTWRLWDVD 399 (579)
Q Consensus 330 ~V~~l~~sp-~~~~l~s~s~dg-~I~iwd~-~~~~~~~~~~h~~~I--~~l~~sp~~~~l~s~s~d-----g~I~lwd~~ 399 (579)
....++.+| ....++.+-.-| ...+||. .+.....+....+.- -.-+|+++|++|++.-+| |.|-+||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677787 445566666655 4667774 344444443322221 136799999999987554 889999998
Q ss_pred -CCcEEEEEecCCCCeEEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCeEEEEEe----cCCCCe
Q 008050 400 -TGVELLLQEGHSRSVYGIAFHPDGSLAASCG------------------LDALARVWDLRTGRSILALE----GHVKPV 456 (579)
Q Consensus 400 -~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~------------------~dg~I~iwd~~~~~~~~~~~----~~~~~I 456 (579)
+...+..+..|.-.-..+.+.|||..|+++. .+-.+...|..+|+.+.... .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 5566777777777778899999997777652 12356667788888877643 377789
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEEEeC-------CCCCeEEEEEeeCCCeEEEEEECCCEEEE
Q 008050 457 LGISFSPNGYHLATGGEDNT-------CRIWDLRKRKSLYVIPA-------HSNLISQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~-------I~iwDl~~~~~~~~~~~-------~~~~V~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
..+++..+|..++..-..|. |.+++ .+..+..+.. -.+.+-+|+++.+++.+.+|+-..|.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999976666544432 44444 3333333332 24679999999975566677777899999
Q ss_pred EECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEE
Q 008050 523 WSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIK 563 (579)
Q Consensus 523 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 563 (579)
||..+++++....-. .+..++...++ ++++.+. |.+.
T Consensus 244 ~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~-G~~~ 280 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ-GQLI 280 (305)
T ss_pred EECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC-ccEE
Confidence 999999998777533 36777777666 6666554 4433
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.2e-08 Score=99.23 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=121.7
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCCeEEEEE
Q 008050 344 ATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG----VELLLQEGHSRSVYGIAF 419 (579)
Q Consensus 344 ~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~----~~~~~~~~~~~~V~~l~~ 419 (579)
++.+.+..|-+-|+.+.....|. ..+.|.++.|+..+++++.|+.+|.|..+|++.+ .......-|.+.|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 55666777888888877777666 6788999999999999999999999999999865 222233368889999988
Q ss_pred cC-CCCEEEEEeCCCeEEEEeCCCCeE---EEEEecCCCCeEEE--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 420 HP-DGSLAASCGLDALARVWDLRTGRS---ILALEGHVKPVLGI--SFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 420 sp-dg~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~I~si--~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
.. ++++|++.+.+|+|++||+|--++ +.++.+|...-.-+ .+.+....+++++.|...+||.++.+..+.+++.
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 77 788999999999999999997666 89999986543333 3344556788899999999999999999988875
Q ss_pred CC
Q 008050 494 HS 495 (579)
Q Consensus 494 ~~ 495 (579)
..
T Consensus 387 ~~ 388 (425)
T KOG2695|consen 387 PY 388 (425)
T ss_pred CC
Confidence 43
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4.3e-07 Score=97.36 Aligned_cols=181 Identities=20% Similarity=0.250 Sum_probs=134.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~ 408 (579)
..++|++++ +.+|+.|+.+|.|++++..+.. .+...|... .-+|.|+++|+.||+|.|..+-+.+....+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~- 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY- 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-
Confidence 456666665 4789999999999999988876 444445443 567999999999999999999888777665
Q ss_pred cCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEeCCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 409 GHSRSVYGIAFHPD-----GSLAASCGLDALARVWDLRT--GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 409 ~~~~~V~~l~~spd-----g~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
....++.+++++|+ .+.+++||.-| +.++.-+- .+.-..+....++|.+++| .|++|+-++.+| |+|||
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYD 185 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEe
Confidence 34568999999997 45899999888 77765331 1111245566789999999 577999988877 99999
Q ss_pred CCCCceeEEEeCCCCC------eEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 482 LRKRKSLYVIPAHSNL------ISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 482 l~~~~~~~~~~~~~~~------V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
+.+++.+..++..... -..+.|.+. ..|+.|- ..+|+|..++
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIGW-GDSVKICSIK 233 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEec-CCeEEEEEEe
Confidence 9998888777653322 345778763 4455554 4468888876
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.80 E-value=3.7e-06 Score=91.24 Aligned_cols=271 Identities=11% Similarity=0.071 Sum_probs=170.3
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC------CeE--EEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecc
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTE------RAT--DVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGH 368 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~------~V~--~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h 368 (579)
+..+++++.+|.|+-+|..+++.+..+..... .+. .+... ++..++.++.+|.|.-+|. +++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55677788899999999999998877654322 010 11111 2267888889999999995 46666555433
Q ss_pred cCC-----e-EEEEEecCCCEEEEEe---------CCCeEEEEECCCCcEEEEEecCCC--------------------C
Q 008050 369 LDR-----L-ARMAFHPSGKYLGTTS---------FDKTWRLWDVDTGVELLLQEGHSR--------------------S 413 (579)
Q Consensus 369 ~~~-----I-~~l~~sp~~~~l~s~s---------~dg~I~lwd~~~~~~~~~~~~~~~--------------------~ 413 (579)
... + ....+. +..++.++ .++.+..+|..+|+.+..+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 1 112222 24455553 468899999999998876643211 0
Q ss_pred e-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCeEEEEEecCCCCeE------EEEEc----CC
Q 008050 414 V-YGIAFHPDGSLAASCGLDA------------------LARVWDLRTGRSILALEGHVKPVL------GISFS----PN 464 (579)
Q Consensus 414 V-~~l~~spdg~~l~sg~~dg------------------~I~iwd~~~~~~~~~~~~~~~~I~------si~~s----p~ 464 (579)
+ ....+.+.+.+++.++.++ .|.-+|..+|+.+..+........ ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234444556777777665 799999999999888753211111 01111 13
Q ss_pred CC---EEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE-----------------EECCCEEEEEE
Q 008050 465 GY---HLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT-----------------GSYDMTVKVWS 524 (579)
Q Consensus 465 g~---~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s-----------------gs~dg~I~iwd 524 (579)
|. .+++++.+|.+..+|.++++.+....... ..+..++ +.+++. ...+|.+.-+|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 33 67888899999999999999988765321 1122333 222221 12467899999
Q ss_pred CCCCeEEEEecCCC--------CcE--EEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 525 GRDFKLVKSLSGHE--------AKV--TSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 525 ~~~~~~~~~l~~h~--------~~V--~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
..+++.+-+..... ... ..+.. .+..|+.++.||.|+.+|..+++...++++
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 99998877665321 111 12222 467899999999999999999998877654
No 313
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.80 E-value=3.1e-06 Score=87.95 Aligned_cols=260 Identities=18% Similarity=0.184 Sum_probs=154.2
Q ss_pred cCCCCEEEEEe---------cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 008050 295 SHDGNLLATSS---------LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF 365 (579)
Q Consensus 295 spdg~~latgs---------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 365 (579)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+.++... ++.|.+++..+.....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877742 357899999999765544332 67899999999999998876 47899998655433332
Q ss_pred ecc------------------cCCeEEEEEecCCCEEEEEeCCC------------------------------------
Q 008050 366 QGH------------------LDRLARMAFHPSGKYLGTTSFDK------------------------------------ 391 (579)
Q Consensus 366 ~~h------------------~~~I~~l~~sp~~~~l~s~s~dg------------------------------------ 391 (579)
... .+.-..+.|+|+|++|+....|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 211 12335788999999988765431
Q ss_pred eEEEEECCCCcEEEEE-----ecCCCCeEEEEEcCCCCEEEEE--eCC---CeEEEEeCCCCeEEEEEec-CCCC---eE
Q 008050 392 TWRLWDVDTGVELLLQ-----EGHSRSVYGIAFHPDGSLAASC--GLD---ALARVWDLRTGRSILALEG-HVKP---VL 457 (579)
Q Consensus 392 ~I~lwd~~~~~~~~~~-----~~~~~~V~~l~~spdg~~l~sg--~~d---g~I~iwd~~~~~~~~~~~~-~~~~---I~ 457 (579)
.+.++|+.+++..... .....-+..+.|.+++..|+.. ..+ ..+.++|..++.....+.. .... -.
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3445566555432211 1223457788999988833333 222 2567778877655433322 2222 23
Q ss_pred EEEEc-CCC-CEEEEEeCCCc--EEEEECCCCceeEEEeCCCCCeEE-EEEeeCCCeEEEEEECC----CEEEEEECCCC
Q 008050 458 GISFS-PNG-YHLATGGEDNT--CRIWDLRKRKSLYVIPAHSNLISQ-VKFEPQEGYFLVTGSYD----MTVKVWSGRDF 528 (579)
Q Consensus 458 si~~s-p~g-~~l~tgs~Dg~--I~iwDl~~~~~~~~~~~~~~~V~~-v~~sp~~~~~l~sgs~d----g~I~iwd~~~~ 528 (579)
.+.|. +++ .+|.....||. |.+++...+. ...+....-.|.. +.|+++++.+++++..+ ..|+..++..+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 554 45555556774 5566665554 4455555556644 67888777777777753 35666677723
Q ss_pred eEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 529 KLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 529 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
..+..+....+.-..+.|||+|++++..+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 34445554433336899999999976544
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=1e-05 Score=79.99 Aligned_cols=224 Identities=17% Similarity=0.163 Sum_probs=155.8
Q ss_pred EEEEcC-CCCEEEEEecCCe-EEEEeCCCCeeEEEEeCCCCC--eEEEEEccCCCEEEEEeC-----CCcEEEEeCC--C
Q 008050 291 GCSYSH-DGNLLATSSLSGV-VKIWSMPRLQKFSALKGHTER--ATDVTFSPVSNHVATSSA-----DRTARLWNTD--G 359 (579)
Q Consensus 291 ~~~~sp-dg~~latgs~dg~-I~iwd~~~~~~~~~l~~h~~~--V~~l~~sp~~~~l~s~s~-----dg~I~iwd~~--~ 359 (579)
.++.+| .+..++.+-.-|. ..+||..+++....+....+. --.-+|+++|++|++.-. .|.|-|||.. -
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 466788 5567777777665 678999999988777654333 235789999999998744 4899999976 3
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeC------------------CCeEEEEECCCCcEEEEEe----cCCCCeEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSF------------------DKTWRLWDVDTGVELLLQE----GHSRSVYGI 417 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~------------------dg~I~lwd~~~~~~~~~~~----~~~~~V~~l 417 (579)
..+..+..|.-.--.+.+.|+|+.|+++.. +.++.+.|..+|+.+.... .|..+|..+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 456667777666678889999988877632 3467777888888776533 377789999
Q ss_pred EEcCCCCEEEEEeCCCe-------EEEEeCCCCeEEEEEe-------cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 008050 418 AFHPDGSLAASCGLDAL-------ARVWDLRTGRSILALE-------GHVKPVLGISFSPNGYHLATGG-EDNTCRIWDL 482 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg~-------I~iwd~~~~~~~~~~~-------~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl 482 (579)
++..+|..++..-..|- |-+++. +..+..+. .-.+-|-+|+++.+|.++++.+ ..|.+.+||.
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 99999976666544432 333332 33232222 2345689999999998887666 6788999999
Q ss_pred CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEE
Q 008050 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVK 521 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~ 521 (579)
.++..+...... .++.++...+ .|+++.+ .|.+.
T Consensus 247 ~tg~~~~~~~l~--D~cGva~~~~--~f~~ssG-~G~~~ 280 (305)
T PF07433_consen 247 ATGRLLGSVPLP--DACGVAPTDD--GFLVSSG-QGQLI 280 (305)
T ss_pred CCCCEeeccccC--ceeeeeecCC--ceEEeCC-CccEE
Confidence 999988776543 3556666653 3565544 45443
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.3e-06 Score=94.36 Aligned_cols=202 Identities=13% Similarity=0.166 Sum_probs=143.0
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC-eEEEEEccCCCEEEEEeCCC-----cEEEEeCCC----C--
Q 008050 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTER-ATDVTFSPVSNHVATSSADR-----TARLWNTDG----S-- 360 (579)
Q Consensus 293 ~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~sp~~~~l~s~s~dg-----~I~iwd~~~----~-- 360 (579)
+|++.+..++.|+.+|.|.+++ ...+.+..++.+... |..+....+.++|++.+.|+ .|+||+++. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678899999999999998887 344555778887777 55554444447888877764 589999532 2
Q ss_pred -ee--EEEec-----ccCCeEEEEEecCCCEEEEEeCCCeEEEEECC----CCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 361 -LL--NTFQG-----HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD----TGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 361 -~~--~~~~~-----h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~----~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
++ ..+.. ...++.+++++.+-+.+++|-.+|.|..+.-+ .+...........+|+.+.+..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 12 12222 24578899999999999999999999998432 23333333345678999999999987444
Q ss_pred EeCCCeEEEEeCCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCC
Q 008050 429 CGLDALARVWDLRTGR-SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSN 496 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~-~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~ 496 (579)
......|.+|.+.... ....+..|...+.|..|++....|++++. ..+.+||....+....+. +|..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 4456788999988444 24457778888999999886665666554 469999988777777776 5543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.4e-07 Score=88.54 Aligned_cols=254 Identities=13% Similarity=0.159 Sum_probs=150.5
Q ss_pred EEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCee-EEEecccCCeEEEEEecCCC-EEEE
Q 008050 310 VKIWSMPRLQKFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLL-NTFQGHLDRLARMAFHPSGK-YLGT 386 (579)
Q Consensus 310 I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~-~~~~~h~~~I~~l~~sp~~~-~l~s 386 (579)
+++.+..+.+....+.+|...|..++|+|..+ ++..++.+..|+|.|+....+ ..+..+ ..+++++|.-+.. +++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666666666678888999999999887 788899999999999777554 445545 8899999988664 7778
Q ss_pred EeCCCeEEEEECCCCcEEEE-Ee--cCCCCeEEEEEc------CCCCEEEEEeCCCeEEEEeCCCC----eEEEEEecCC
Q 008050 387 TSFDKTWRLWDVDTGVELLL-QE--GHSRSVYGIAFH------PDGSLAASCGLDALARVWDLRTG----RSILALEGHV 453 (579)
Q Consensus 387 ~s~dg~I~lwd~~~~~~~~~-~~--~~~~~V~~l~~s------pdg~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~ 453 (579)
|..+|.|.+||++..+.... +. -...+|..++.- +.|.+++....+ +..|.+.-. .++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 88899999999986543221 11 112344443322 234444444332 334544321 1112221 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-------cEE-EEECCCCceeEEEe-CC-CCCe-----E-EEEEeeCCCeEEEEEECC
Q 008050 454 KPVLGISFSPNGYHLATGGEDN-------TCR-IWDLRKRKSLYVIP-AH-SNLI-----S-QVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs~Dg-------~I~-iwDl~~~~~~~~~~-~~-~~~V-----~-~v~~sp~~~~~l~sgs~d 517 (579)
+...++.+.+..++++.....+ .|- -.|.+.|..+.... .+ .+.- . .+.-.+++..++..|+..
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 3455555555444444433221 011 12233344333221 11 1110 1 111123444555666677
Q ss_pred CEEEEEECCCCeEEEEecCCCCcEEEEEEcC-C-CCEEEEEEcCCeEEEEEcCC
Q 008050 518 MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP-D-EQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 518 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~-d-g~~L~s~s~Dg~I~iW~~~~ 569 (579)
+.+.+||..+++.+.++... .+|.+++... + +.+|++-. |..++||..+.
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 89999999999999998744 6788877543 3 34566655 56699987653
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=6.3e-06 Score=77.77 Aligned_cols=262 Identities=12% Similarity=0.118 Sum_probs=145.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMA 376 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~ 376 (579)
|++++.|...|.+++.+.++|.....+.....--......+++..+..|+.|++.+..|... ..+...+...+...+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 67899999999999999999988887764433222334567889999999999999999544 45555554444444455
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCeEE--EEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC
Q 008050 377 FHPSGKYLGTTSFDKTWRLWDVDTGV--ELLLQEGHSRSVYG--IAFHPDGSLAASCGLDALARVWDLRTGRSILALEGH 452 (579)
Q Consensus 377 ~sp~~~~l~s~s~dg~I~lwd~~~~~--~~~~~~~~~~~V~~--l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 452 (579)
+.+-...|+.+...|.+.--..+... .+.... ..+++.+ ++ -+..+..++.||.+.-+| .+|+.+..+. .
T Consensus 143 i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t 216 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA-T 216 (354)
T ss_pred ecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec-C
Confidence 56644456666666666655555442 111111 1122221 11 134566666777777777 5666665443 2
Q ss_pred CCCeEE-EEEc-CCCCEEEEEeCCCcE--------EEEECCCCceeEEEeCCCCCeEEEEEee---CCCeEEEEEECCCE
Q 008050 453 VKPVLG-ISFS-PNGYHLATGGEDNTC--------RIWDLRKRKSLYVIPAHSNLISQVKFEP---QEGYFLVTGSYDMT 519 (579)
Q Consensus 453 ~~~I~s-i~~s-p~g~~l~tgs~Dg~I--------~iwDl~~~~~~~~~~~~~~~V~~v~~sp---~~~~~l~sgs~dg~ 519 (579)
.++|.. -+-+ |....|..+.++..+ .+|..++|...+..-..+- ...++. ....+|..++.||.
T Consensus 217 ~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l---~F~~h~~~~S~~~ll~~~s~dgk 293 (354)
T KOG4649|consen 217 KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKL---RFDLHSPGISYPKLLRRSSGDGK 293 (354)
T ss_pred CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCccc---ceeccCCCCcchhhhhhhcCCCc
Confidence 223321 1111 333344444444333 3455555433332211100 011111 12457777888998
Q ss_pred EEEEECCCCeEEEEecCCCCcEEEEE--------E-cC--CCCEEEEEEcCCeEEEEEcCCC
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVTSLD--------I-HP--DEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~~l~--------~-s~--dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+.|.-.+ +.+.....|.+.+-.+. | || -+..|+.|+.|..++-||+.+.
T Consensus 294 v~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 294 VMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred EEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence 8887332 22333333333322221 2 22 1245888899999999999764
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.78 E-value=1.2e-06 Score=97.83 Aligned_cols=234 Identities=15% Similarity=0.192 Sum_probs=153.4
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-----CC-
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-----GS- 360 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-----~~- 360 (579)
..|.++.|..+++-++.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+-..+ .+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 68999999999999999999999999987665432 223356789999999999999999988887765421 11
Q ss_pred ------------------eeEEEeccc---------------------CCeEEEEEecCCCEEEEEe----CC-CeEEEE
Q 008050 361 ------------------LLNTFQGHL---------------------DRLARMAFHPSGKYLGTTS----FD-KTWRLW 396 (579)
Q Consensus 361 ------------------~~~~~~~h~---------------------~~I~~l~~sp~~~~l~s~s----~d-g~I~lw 396 (579)
.-..|.+.. +.=+.++|--||+++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 111222111 1124589999999999843 23 789999
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCC---CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG---LDALARVWDLRT---GRSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 397 d~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~---~dg~I~iwd~~~---~~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
|-+ |..-..-....+--.+++|-|.|.++++-. .|+.|.+|.-+. |.....+......|..++|+.++..|++
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 987 444333333344456799999999888754 456788887322 2222223334445899999999999988
Q ss_pred ---EeCCCcEEEEECCCCce--eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 471 ---GGEDNTCRIWDLRKRKS--LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 471 ---gs~Dg~I~iwDl~~~~~--~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
......|++|-+.+..- ...+....... +.|+|.....+..-..+|.+.+++
T Consensus 307 ~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 44555699999866432 12222222222 667765444444444555555544
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.75 E-value=7.1e-06 Score=91.95 Aligned_cols=236 Identities=14% Similarity=0.167 Sum_probs=155.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC----C---
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD----T--- 400 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~----~--- 400 (579)
.+.|.++.|..+.+.++.+...|.|.+-|...........-...|.+++|+||+..++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 358999999999999999999999999987776666666677899999999999999999998888765430 0
Q ss_pred ----------------CcEEEEEecC---------------------CCCeEEEEEcCCCCEEEEEe----CC-CeEEEE
Q 008050 401 ----------------GVELLLQEGH---------------------SRSVYGIAFHPDGSLAASCG----LD-ALARVW 438 (579)
Q Consensus 401 ----------------~~~~~~~~~~---------------------~~~V~~l~~spdg~~l~sg~----~d-g~I~iw 438 (579)
|+.-..+.|. .+.=++|+|--||.++++.. .+ ..|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1111111111 11123589999999998843 23 789999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCC---CceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGG---EDNTCRIWDLRK---RKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs---~Dg~I~iwDl~~---~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
|-. |..-..-....+--.+++|-|.|..+++-. .|+.|.+|.-+. +.....+......|..++|+.+ +.+|+
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~-sdiLA 305 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN-SDILA 305 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC-CCcee
Confidence 966 443333233334456899999999888764 566799997432 2222223334445899999986 66776
Q ss_pred E---EECCCEEEEEECCCCeEE--EEecCCCCcEEEEEEcCCCC-EEEEEEcCCeEEEEEc
Q 008050 513 T---GSYDMTVKVWSGRDFKLV--KSLSGHEAKVTSLDIHPDEQ-SIATVSHDRWIKLWST 567 (579)
Q Consensus 513 s---gs~dg~I~iwd~~~~~~~--~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~iW~~ 567 (579)
+ ......|++|-+.+.... ..+....... +.|+|... .|..-..+|.+.++++
T Consensus 306 v~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 6 444555999998876532 2232222212 67777332 2433335666555554
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.2e-06 Score=94.59 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=142.8
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCC-eEEEEEecCCCEEEEEeCCC-----eEEEEECCCC------c
Q 008050 335 TFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDR-LARMAFHPSGKYLGTTSFDK-----TWRLWDVDTG------V 402 (579)
Q Consensus 335 ~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~-I~~l~~sp~~~~l~s~s~dg-----~I~lwd~~~~------~ 402 (579)
+|++.+..++.|+.+|.|.+++..-+....++.+... |..+....+.++|++.+.|+ .+++||++.- .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 4677889999999999999999776777788887777 44444443446788777664 5899998643 1
Q ss_pred EE--EEEec-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 008050 403 EL--LLQEG-----HSRSVYGIAFHPDGSLAASCGLDALARVWDLRT----GRSILALEGHVKPVLGISFSPNGYHLATG 471 (579)
Q Consensus 403 ~~--~~~~~-----~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~I~si~~sp~g~~l~tg 471 (579)
++ ..... ...++.+++.+.+-+.+++|-.+|.|..+.-.- |....-......+|+.+.+..++..++..
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 22 11112 245788999999999999999999999884321 12222222345689999999988773333
Q ss_pred eCCCcEEEEECCCCce-eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec-CCCCcEE
Q 008050 472 GEDNTCRIWDLRKRKS-LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS-GHEAKVT 542 (579)
Q Consensus 472 s~Dg~I~iwDl~~~~~-~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~ 542 (579)
..-..|.+|.+....+ ...+..|+..++|..+++..+.+++++ +..+.+|+....+....+. +|.....
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 3445799999974432 445777888899999997544354443 3469999988777777776 6665443
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=4.2e-09 Score=112.74 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=156.9
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCC--eEE
Q 008050 318 LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK--TWR 394 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg--~I~ 394 (579)
.+...+|..|....+|++|+-+.++|++|+..|.|++|+. .|.......+|...|+-+.-+.+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 3445567778899999999999999999999999999994 5667778899999999999999999777665443 467
Q ss_pred EEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-ec---CCCCeEEEEEcCCCCEEE
Q 008050 395 LWDVDT-GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL-EG---HVKPVLGISFSPNGYHLA 469 (579)
Q Consensus 395 lwd~~~-~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~-~~---~~~~I~si~~sp~g~~l~ 469 (579)
+|++.. +.....+ ..-.++.|+.....-+.|+......+||+.++..+.++ .+ ....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 898864 2232232 23457888887666666777788999999998877663 21 222236788999887776
Q ss_pred EEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCC
Q 008050 470 TGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 470 tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
.|| .+||.|....++.|...+.. ..=.|+|. |.-++.-+ .|||++++++++...... -..+.|+..
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~-g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNst 1312 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPS-GNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNST 1312 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccCC-CceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccC
Confidence 455 47999998888877654422 22458896 44454433 589999998877665332 245566666
Q ss_pred CCEEE
Q 008050 550 EQSIA 554 (579)
Q Consensus 550 g~~L~ 554 (579)
|..++
T Consensus 1313 G~VmY 1317 (1516)
T KOG1832|consen 1313 GDVMY 1317 (1516)
T ss_pred ccchh
Confidence 66544
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.70 E-value=5.5e-08 Score=91.27 Aligned_cols=148 Identities=16% Similarity=0.257 Sum_probs=100.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEeCCC
Q 008050 422 DGSLAASCGLDALARVWDLRTGRSIL-ALEGHVKPVLGISFSPNGYHLATGGE-----DNTCRIWDLRKRKSLYVIPAHS 495 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~I~si~~sp~g~~l~tgs~-----Dg~I~iwDl~~~~~~~~~~~~~ 495 (579)
.++-+++++.||.+.+++.+.-..+. ........-.+.++...++.|.++.. -+..+.|+++..+.+..-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 45679999999999999987521111 11111111223333344555554431 2346677766544332222223
Q ss_pred CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE-EEEecCCCCcEEEEEEcC-CCCEEEEEEcCCeEEEEEcCC
Q 008050 496 NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL-VKSLSGHEAKVTSLDIHP-DEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
..|++++-+|...+++++|+.||.+.+||.++... ...+..|+..++.+-|+| ++..|++++.||.+..||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 34899999998788899999999999999988753 345678999999999999 667899999999999999874
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.69 E-value=2.4e-06 Score=81.91 Aligned_cols=196 Identities=12% Similarity=0.169 Sum_probs=118.1
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-------CCCCeEEEEEccCC------CEEEEEeCCCcEEE
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-------HTERATDVTFSPVS------NHVATSSADRTARL 354 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~------~~l~s~s~dg~I~i 354 (579)
.=.-++||||+.+||.+...|+|++||+..... ..+.. -...|..+.|.... ..|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 345789999999999999999999999875333 33322 23456777775432 24666778888777
Q ss_pred EeCC------CCeeEEEe---cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 355 WNTD------GSLLNTFQ---GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 355 wd~~------~~~~~~~~---~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
|-+. ......+. .+...|+++.++|..+.|++|+.... +.+. .......+++-....+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 7632 12223332 24668999999999998888775322 0000 0011112222222221111
Q ss_pred --EEEEeCCCe------EEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 426 --AASCGLDAL------ARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 426 --l~sg~~dg~------I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
.++...|+. ..+|.+-+.+...........|..|..||||..|++.+.+|.|.+|++.+.+....+..+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 111111211 123333322222222234567999999999999999999999999999887777666543
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.58 E-value=6e-05 Score=81.82 Aligned_cols=228 Identities=14% Similarity=0.120 Sum_probs=144.8
Q ss_pred CEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC-----e-EEEEEccCCCEEEEEe---------CCCcEEEEeC-CCCee
Q 008050 299 NLLATSSLSGVVKIWSMPRLQKFSALKGHTER-----A-TDVTFSPVSNHVATSS---------ADRTARLWNT-DGSLL 362 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~-----V-~~l~~sp~~~~l~s~s---------~dg~I~iwd~-~~~~~ 362 (579)
..++.++.+|.|+-+|..+++.+..+...... + .+..+. +..++.++ .+|.+..+|. +++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67888889999999999999999887643321 1 111222 24455554 3577888885 45655
Q ss_pred EEEecccC--------------------Ce-EEEEEecCCCEEEEEeCCC------------------eEEEEECCCCcE
Q 008050 363 NTFQGHLD--------------------RL-ARMAFHPSGKYLGTTSFDK------------------TWRLWDVDTGVE 403 (579)
Q Consensus 363 ~~~~~h~~--------------------~I-~~l~~sp~~~~l~s~s~dg------------------~I~lwd~~~~~~ 403 (579)
..+..... .+ ....+.+.+..++.++.++ .|.-+|..+|+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 55443211 01 1234444566788877665 799999999998
Q ss_pred EEEEecCCCCeE------EEEEc----CCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 404 LLLQEGHSRSVY------GIAFH----PDGS---LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 404 ~~~~~~~~~~V~------~l~~s----pdg~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
...+........ ...+. -++. .++.++.+|.+..+|.++|+.+....... ..+..++ ..++.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEE
Confidence 887642111111 01111 1333 67888899999999999999887765321 1233344 23333
Q ss_pred E------------------eCCCcEEEEECCCCceeEEEeCCC--------CCe--EEEEEeeCCCeEEEEEECCCEEEE
Q 008050 471 G------------------GEDNTCRIWDLRKRKSLYVIPAHS--------NLI--SQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 471 g------------------s~Dg~I~iwDl~~~~~~~~~~~~~--------~~V--~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
+ ..+|.|.-+|+.+++.+....... ... ..+.. .+.+|+.++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEE
Confidence 2 236789999999999888776531 111 11222 2457888889999999
Q ss_pred EECCCCeEEEEecC
Q 008050 523 WSGRDFKLVKSLSG 536 (579)
Q Consensus 523 wd~~~~~~~~~l~~ 536 (579)
+|..+++.+.++..
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999999988764
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.54 E-value=5.2e-05 Score=81.61 Aligned_cols=252 Identities=15% Similarity=0.085 Sum_probs=143.9
Q ss_pred CCCCEEEEEec-CCeEEEEeCCCCeeEEEEeC-CCCCeEEEEEc--cCCCEEEEEeC-------C-----------CcEE
Q 008050 296 HDGNLLATSSL-SGVVKIWSMPRLQKFSALKG-HTERATDVTFS--PVSNHVATSSA-------D-----------RTAR 353 (579)
Q Consensus 296 pdg~~latgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s--p~~~~l~s~s~-------d-----------g~I~ 353 (579)
.||+||+.-.. ++.|-..++...++...+.. ....+..+.|- |+..+++.++. | +.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 47888888764 56666667666555443321 22334444443 34444444332 2 3444
Q ss_pred EEeCCCCee-EEEecccCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 354 LWNTDGSLL-NTFQGHLDRLARMAFHPSGKYLGTTSFD----KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 354 iwd~~~~~~-~~~~~h~~~I~~l~~sp~~~~l~s~s~d----g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
+.|.+...+ .++. -.+....+.++++|+++++.+.+ +++...+.........+.... + -.+.++|++...
T Consensus 219 vID~etmeV~~qV~-Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V 293 (635)
T PRK02888 219 AVDAETMEVAWQVM-VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI 293 (635)
T ss_pred EEECccceEEEEEE-eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE
Confidence 445333222 2221 12234567788888888887643 223333222211111111000 0 023457776665
Q ss_pred EeCCCeEEEEeCCC----C-eEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce------------eEE
Q 008050 429 CGLDALARVWDLRT----G-RSILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKS------------LYV 490 (579)
Q Consensus 429 g~~dg~I~iwd~~~----~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~------------~~~ 490 (579)
.++.|.++|.++ + +.+..+. -......+.++|||+++++++ .+++|.|+|+.+.+. +..
T Consensus 294 --~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 294 --GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred --CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 367899999998 3 3344443 445578999999999888776 588999999988653 344
Q ss_pred EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC----------CeEEEEecCCCCcEEE-----EEEcCCCCEEEE
Q 008050 491 IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD----------FKLVKSLSGHEAKVTS-----LDIHPDEQSIAT 555 (579)
Q Consensus 491 ~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~-----l~~s~dg~~L~s 555 (579)
.....+++ ...|+.+ |+.+.+-.-|..|..|++.. ...+..+.-|-.+-.- =.-.+||+||++
T Consensus 371 vevGlGPL-HTaFDg~-G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~ 448 (635)
T PRK02888 371 PELGLGPL-HTAFDGR-GNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVS 448 (635)
T ss_pred eccCCCcc-eEEECCC-CCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEE
Confidence 44444443 4788886 66777778899999999876 3455555544432211 123567888777
Q ss_pred EE
Q 008050 556 VS 557 (579)
Q Consensus 556 ~s 557 (579)
..
T Consensus 449 ~n 450 (635)
T PRK02888 449 LN 450 (635)
T ss_pred cc
Confidence 64
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.1e-06 Score=92.26 Aligned_cols=182 Identities=18% Similarity=0.241 Sum_probs=133.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 008050 370 DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL 449 (579)
Q Consensus 370 ~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~ 449 (579)
..+.|++++ +++|+.|+.+|.|++++....- .....|... .-+|.++++|+.||+|.|..+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 445667776 7899999999999999876442 222234332 557999999999999999999998888777
Q ss_pred ecCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEECCCC--ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEE
Q 008050 450 EGHVKPVLGISFSPN-----GYHLATGGEDNTCRIWDLRKR--KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 450 ~~~~~~I~si~~sp~-----g~~l~tgs~Dg~I~iwDl~~~--~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
. ...++.+|+++|+ .+.+++|+.-| +.++.-+-. +.-..+....+.|.+++|. |++++=++.+| |+|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKV 183 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCC-cEE
Confidence 6 4457999999997 57899999888 777763321 1111345567899999997 66777777666 999
Q ss_pred EECCCCeEEEEecCCCCc------EEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 523 WSGRDFKLVKSLSGHEAK------VTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 523 wd~~~~~~~~~l~~h~~~------V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
||....+.+..+...... -..+.|.++. .|+.| +..+|+|..++.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEec
Confidence 999998888777543322 3567888654 35444 556799999983
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.6e-06 Score=83.81 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=141.9
Q ss_pred ccCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCC
Q 008050 282 ESGDDRPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTDG 359 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~ 359 (579)
+.+|...|..++|||..+ ++..++.+..|+|.|+.+...+..+..| ..+++++|.-+. ++|+.|..+|.|.+||...
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 456788999999999887 8889999999999999999999888887 889999998765 5677788899999999543
Q ss_pred --CeeEEEec--ccCCeEEEE------EecCCCEEEEEeCCCeEEEEECCCC--cEEEEE-ecCCCCeEEEEEcCCCCEE
Q 008050 360 --SLLNTFQG--HLDRLARMA------FHPSGKYLGTTSFDKTWRLWDVDTG--VELLLQ-EGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 360 --~~~~~~~~--h~~~I~~l~------~sp~~~~l~s~s~dg~I~lwd~~~~--~~~~~~-~~~~~~V~~l~~spdg~~l 426 (579)
..+..+.+ ...+|..++ ..+.|.+|+..+.+ +..|.+... ....+. .+..+.+.++++++-.+.+
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHL 345 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceE
Confidence 22222222 112233322 23344455544433 344544321 111111 1334455566666644444
Q ss_pred EEEeCCC-------eE-EEEeCCCCeEEEEEe-cCCC-C------eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeE
Q 008050 427 ASCGLDA-------LA-RVWDLRTGRSILALE-GHVK-P------VLGISFSPNGY-HLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 427 ~sg~~dg-------~I-~iwd~~~~~~~~~~~-~~~~-~------I~si~~sp~g~-~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
+...... .+ .--|.+.|..+...+ ++.+ . -..+.-.++.+ .+.+|...+.+.+||..++..++
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 3332220 01 112223343333221 1100 0 01111122333 34455567889999999999999
Q ss_pred EEeCCCCCeEEEEEeeCC-CeEEEEEECCCEEEEEECC
Q 008050 490 VIPAHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp~~-~~~l~sgs~dg~I~iwd~~ 526 (579)
++... .+|.+++....+ +.||+. -.|..++||...
T Consensus 426 ~l~~~-epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 426 TLALS-EPVLDICPNDTNGSSYLAL-LTDDRVHIYKNE 461 (463)
T ss_pred ecccC-cceeecceeecCCcchhhh-eecceEEEEecC
Confidence 98765 778888876544 345554 446678888643
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=2.5e-06 Score=92.66 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=137.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARM 375 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l 375 (579)
++..++.|+....+..+|+.+.+..+...-..+.|.-+.. +++++++|...|+|.+-|.+. +.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4566777777888888999988887776655556666665 468999999999999999554 7889999999999887
Q ss_pred EEecCCCEEEEEeCC---------CeEEEEECCCCcEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe---CCC
Q 008050 376 AFHPSGKYLGTTSFD---------KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD-GSLAASCGLDALARVWD---LRT 442 (579)
Q Consensus 376 ~~sp~~~~l~s~s~d---------g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd-g~~l~sg~~dg~I~iwd---~~~ 442 (579)
..+ |+.|++++.. .-|++||++.-..+.-..-+.++ .-+.|+|. ...+++++..|...+.| +.+
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 775 8899998864 56889999876655444333332 45678884 45788888999999999 333
Q ss_pred Ce-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 443 GR-SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 443 ~~-~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
.. .+..+......+..++++++|..++.|..+|.|.+|-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 31 2233333444599999999999999999999999997
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.51 E-value=1.9e-05 Score=84.10 Aligned_cols=272 Identities=13% Similarity=0.071 Sum_probs=152.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEE-eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe----e
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL-KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL----L 362 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~----~ 362 (579)
.|.--+++..+++++.|+.-|.+++|+-..++....- .+-.+.+..+..+++..+++.|+..|.|.++.++... .
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 3444456778999999999999999998776554332 2344566677788888888999999999999854321 1
Q ss_pred --EEE-ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 363 --NTF-QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV----ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 363 --~~~-~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~----~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
... +.|...|++++|++++..+++|...|+|.+-.+.+.. ....+....+.|.-+.+. ++.+|++...-.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r~-- 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTRC-- 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhhh--
Confidence 111 2377899999999999999999999999998887621 111122334556555554 233333333222
Q ss_pred EEEeCCCCe--EEEEEecCCC-CeEEEEEcCC----CCEEEEEeCCCcEEEEECCC-CceeEEEeC-------------C
Q 008050 436 RVWDLRTGR--SILALEGHVK-PVLGISFSPN----GYHLATGGEDNTCRIWDLRK-RKSLYVIPA-------------H 494 (579)
Q Consensus 436 ~iwd~~~~~--~~~~~~~~~~-~I~si~~sp~----g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~-------------~ 494 (579)
.++++..++ .+..-. ..+ .-...||-+. ..-.+.++.-| .++|..+- |..+.+... +
T Consensus 192 ~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~ 269 (726)
T KOG3621|consen 192 ILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPI 269 (726)
T ss_pred heeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccC
Confidence 234433222 111110 111 0233445442 22333333333 56775432 333322210 0
Q ss_pred CC----------------CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 495 SN----------------LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 495 ~~----------------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
.+ ....+.+- ++.++.+-+.-| |+|+|..+.+.+.-.. ....|.++.. +|+-|++-..
T Consensus 270 ~s~esp~~~~~~~~~q~ls~~k~~~l--~~~~vLa~te~G-iyv~d~~~~~v~l~se-~~~DI~dVs~--~~neiFvL~~ 343 (726)
T KOG3621|consen 270 RSLESPNQRSLPSGTQHLSLSKSSTL--HSDRVLAWTEVG-IYVFDSNNSQVYLWSE-GGHDILDVSH--CGNEIFVLNL 343 (726)
T ss_pred CCcCCccccCCCCCccccccceeEEe--ecceEEEeecce-EEEEEeccceEEEeec-CCCceeEEee--cCceEEEEec
Confidence 00 01111111 122334434334 8899887766554332 2234555544 4666777777
Q ss_pred CCeEEEEEcCCC
Q 008050 559 DRWIKLWSTRNK 570 (579)
Q Consensus 559 Dg~I~iW~~~~~ 570 (579)
||.+++..+.+.
T Consensus 344 d~~l~~~sv~s~ 355 (726)
T KOG3621|consen 344 DRGLKVESVASR 355 (726)
T ss_pred CCceeEEEeehh
Confidence 887887776543
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=4.3e-07 Score=61.51 Aligned_cols=39 Identities=31% Similarity=0.551 Sum_probs=37.1
Q ss_pred CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
|+++..+.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468889999999999999999999999999999999997
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.48 E-value=0.00028 Score=74.62 Aligned_cols=204 Identities=13% Similarity=0.107 Sum_probs=115.8
Q ss_pred EEEcCCCCEEEEEecC----------C-eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 292 CSYSHDGNLLATSSLS----------G-VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 292 ~~~spdg~~latgs~d----------g-~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
++.++.|..+|....+ . .|.||+. .|+.+..+.-..+.|.++.|+.+ ..|++...||.+++||..|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 4556666666665433 2 5888885 45566665544489999999875 55667789999999998776
Q ss_pred eeEEEe---------cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-EEEEEecCCC---------CeEE-EEEc
Q 008050 361 LLNTFQ---------GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-ELLLQEGHSR---------SVYG-IAFH 420 (579)
Q Consensus 361 ~~~~~~---------~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~---------~V~~-l~~s 420 (579)
. .+. -....+....+..+| ++.-..++.+.+.+-.... .......... .... ..++
T Consensus 112 ~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 112 F--QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred e--eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 6 221 111122222333345 3333345555444322221 1111100000 0000 2233
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC-CCCeE
Q 008050 421 PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH-SNLIS 499 (579)
Q Consensus 421 pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-~~~V~ 499 (579)
.+....+....++.+.+.+-...+. +. ..+++..|++||+|++|+.-..+|.+.|.+..-.+.+..+... .....
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~ 263 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPK 263 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCc
Confidence 3444444444455555443222111 11 2357999999999999999999999999987666666666554 34556
Q ss_pred EEEEee
Q 008050 500 QVKFEP 505 (579)
Q Consensus 500 ~v~~sp 505 (579)
.+.|+-
T Consensus 264 ~~~WCG 269 (410)
T PF04841_consen 264 QMAWCG 269 (410)
T ss_pred EEEEEC
Confidence 777874
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=7.9e-06 Score=87.96 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=84.6
Q ss_pred EEEEcCCCCEEEEEe----cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE-E
Q 008050 291 GCSYSHDGNLLATSS----LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT-F 365 (579)
Q Consensus 291 ~~~~spdg~~latgs----~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~-~ 365 (579)
-.+|+|...++++++ ..|.|.||- ++|+....+. ..-.+++++|+|..-.|+.|-.-|.+.+|..+.+...+ .
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 457999999999887 368888885 4555333222 12235679999998889999999999999976655444 4
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~ 399 (579)
..|...|..+.|+++|..++++..-|.|.+|...
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5799999999999999999999999999999875
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=9e-06 Score=87.53 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=90.9
Q ss_pred eEEEEEccCCCEEEEEeC----CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 008050 331 ATDVTFSPVSNHVATSSA----DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406 (579)
Q Consensus 331 V~~l~~sp~~~~l~s~s~----dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~ 406 (579)
-+-..|+|...+|++++. .|+|.||--.|++..... ..-.++++||||..-.|+.|-.-|.+.+|...+.+....
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 345689999999988865 589999986665332221 122356799999998999999999999999988888888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
...|...|..+.|+++|..++++..-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 88999999999999999999999999999999765
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.44 E-value=2.3e-05 Score=84.23 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=148.5
Q ss_pred EEEEecCCeEEEEeCCCCeeEEEEeCCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEec
Q 008050 301 LATSSLSGVVKIWSMPRLQKFSALKGHT-ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHP 379 (579)
Q Consensus 301 latgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp 379 (579)
+.+|+..|.|+|+-+.+++.+..+.-.+ .+-+.--|....+.++..+..|....|.- .|--.+..-.=..
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD---------~HHp~~s~t~g~y 139 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGD---------THHPHMSFTDGTY 139 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCC---------cCCCcccccCCcc
Confidence 5678899999999999998887765211 11111111111222222222222333320 0110011111123
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcEEEEEe-cCCCCeEEEE-------------------EcCCCCEEE-EEeCCCeEEE
Q 008050 380 SGKYLGTTSF-DKTWRLWDVDTGVELLLQE-GHSRSVYGIA-------------------FHPDGSLAA-SCGLDALARV 437 (579)
Q Consensus 380 ~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~-------------------~spdg~~l~-sg~~dg~I~i 437 (579)
||+||++-.. +..|...++...++-.... .....+..+. +.+||+.+. +.-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777777664 4556555555443322221 1112222222 344555432 2223456777
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCCcE
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG----------------------------------------EDNTC 477 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs----------------------------------------~Dg~I 477 (579)
.|..+.+...++.... ....+.++++|.++++.+ .++.|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 8888777766655333 345677888888777765 22457
Q ss_pred EEEECCC-----CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE------------EEEecCCCCc
Q 008050 478 RIWDLRK-----RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL------------VKSLSGHEAK 540 (579)
Q Consensus 478 ~iwDl~~-----~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~------------~~~l~~h~~~ 540 (579)
.++|.++ ...+..+... .....+.++|++.++++++..+++|.|+|+.+.+. +....-.. .
T Consensus 299 ~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-G 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-G 376 (635)
T ss_pred EEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-C
Confidence 7888776 3455555543 44677999999777777777799999999987552 33443322 3
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 541 VTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 541 V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
-...+|..+|+...|...|..|..|++..
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 45678999998888888999999999876
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=0.00046 Score=65.46 Aligned_cols=186 Identities=13% Similarity=0.046 Sum_probs=113.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMA 376 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~ 376 (579)
..+++.|+..+.+.--|..+|+.+..-. -...|.+-+.- -|++++.|+..|.+++.+.+. .....+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4678888889999999999888776532 22233332222 468899999999999999554 45555554333223455
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe--EEEEEecCC
Q 008050 377 FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGR--SILALEGHV 453 (579)
Q Consensus 377 ~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~ 453 (579)
..+++..+..|+.|++.+..|..+...+...+...+...+-++.+ ++. |..+...|.+.--....+. .+..+. ..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~~~~~w~~~-~~ 178 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYSSTEFWAAT-RF 178 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCCCcceehhhh-cC
Confidence 677899999999999999999999888877655444444555666 444 4444555655554444432 111111 12
Q ss_pred CCeEE--EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008050 454 KPVLG--ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 454 ~~I~s--i~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
++|.+ ++. +..+..++-||.+.-+| ..|+.+..+
T Consensus 179 ~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~ 214 (354)
T KOG4649|consen 179 GPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRP 214 (354)
T ss_pred CccccCceec---cceEEEEEeccEEEEEc-CCCcEEEee
Confidence 23322 111 23445555566666666 445555443
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=0.00059 Score=68.46 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=160.8
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCCC-eeEEEeccc-------
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA----------DRTARLWNTDGS-LLNTFQGHL------- 369 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~----------dg~I~iwd~~~~-~~~~~~~h~------- 369 (579)
+.++|+|.++++.+..+.. +-...+..+|+++.+++++. .-.|.+||..+- ....+.-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999988877764 23344677999998887532 346899996653 222221111
Q ss_pred CCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeEE
Q 008050 370 DRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR-TGRSI 446 (579)
Q Consensus 370 ~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~-~~~~~ 446 (579)
.....+.++.+|+++++... -.+|.+.|+..++.+..+.... +..+--.. ..-|.+-|.||.+.-..+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 12234678889998877655 4689999999988877664322 22221122 2357778889999988887 45554
Q ss_pred EEEe----cCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeCC----------CCCeEEEEEeeCCCe
Q 008050 447 LALE----GHVKPVL-GISFSPNGYHLATGGEDNTCRIWDLRKRKSLY--VIPAH----------SNLISQVKFEPQEGY 509 (579)
Q Consensus 447 ~~~~----~~~~~I~-si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~--~~~~~----------~~~V~~v~~sp~~~~ 509 (579)
.... ....++. .-.+...+..++.-+.+|.|+-.|+....... .+..- .+.-.-+++++..+.
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 3221 1122222 22344445555557889999998886554221 22110 122345777765555
Q ss_pred EEEEEE--CCC-------EEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC-EEEEEE-cCCeEEEEEcCCCCcccccc
Q 008050 510 FLVTGS--YDM-------TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ-SIATVS-HDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 510 ~l~sgs--~dg-------~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s-~Dg~I~iW~~~~~~~~~~~~ 577 (579)
+++.-. .+| .|.+||+.+++.+..+.. ...+.+|.++.+.+ +|++.+ .++.|.+||..+++....++
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 444321 121 488889999999999873 34578999999776 565544 57999999999998877654
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.38 E-value=0.00075 Score=67.72 Aligned_cols=244 Identities=14% Similarity=0.130 Sum_probs=146.2
Q ss_pred eEEEEcCCCCEEEEEe----------cCCeEEEEeCCCCeeEEEEeCCCC-------CeEEEEEccCCCEEEEEeC--CC
Q 008050 290 SGCSYSHDGNLLATSS----------LSGVVKIWSMPRLQKFSALKGHTE-------RATDVTFSPVSNHVATSSA--DR 350 (579)
Q Consensus 290 ~~~~~spdg~~latgs----------~dg~I~iwd~~~~~~~~~l~~h~~-------~V~~l~~sp~~~~l~s~s~--dg 350 (579)
-.+.++|+++.+++++ ..-.|.+||..+......+.-... ....+.++.+++++++... -.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888754 245799999999988776542221 2234567777777666533 35
Q ss_pred cEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCcEEEEE----ecCCCCeE-EEEEcCCCC
Q 008050 351 TARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD-TGVELLLQ----EGHSRSVY-GIAFHPDGS 424 (579)
Q Consensus 351 ~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~-~~~~~~~~----~~~~~~V~-~l~~spdg~ 424 (579)
+|.|-|+..+.+.......+. .+.+-...+.|.+.|.||++.-..+. .|+..... ......+. .-.+...+.
T Consensus 119 SVtVVDl~~~kvv~ei~~PGC--~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPGC--WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTSE--EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred eEEEEECCCCceeeeecCCCE--EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 677777666544333222221 22221123468889999999999887 45443221 11122222 223444555
Q ss_pred EEEEEeCCCeEEEEeCCCCeEE--EEEecC----------CCCeEEEEEcCCCCEEEEEeC---CC-------cEEEEEC
Q 008050 425 LAASCGLDALARVWDLRTGRSI--LALEGH----------VKPVLGISFSPNGYHLATGGE---DN-------TCRIWDL 482 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~--~~~~~~----------~~~I~si~~sp~g~~l~tgs~---Dg-------~I~iwDl 482 (579)
.++.-+.+|.|+-.|+...... ..+..- .+...-+++++..+.|++.-. +| .|.+||+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 6666788999999888765432 122110 112334677765545554322 11 4888899
Q ss_pred CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEecC
Q 008050 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~~ 536 (579)
.+++.+..+... ..+.+|.++.+..-+|++.+ .++.+.+||..+++.+.++..
T Consensus 277 ~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 277 KTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999999998763 45778999987666776554 589999999999999998864
No 338
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.38 E-value=0.00081 Score=73.48 Aligned_cols=277 Identities=11% Similarity=0.091 Sum_probs=165.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCC-CCeE---E-------EEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHT-ERAT---D-------VTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~---~-------l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~ 365 (579)
+..|++++.++.|+-+|..+++.+..+.... ..+. + +.+ .+..++.++.|+.|.-.|. +++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 5677778888999999999999988765321 1111 1 122 2356778888999999995 56665554
Q ss_pred eccc----CCeEEEEEecCCCEEEEEe------CCCeEEEEECCCCcEEEEEecCCC-----------------------
Q 008050 366 QGHL----DRLARMAFHPSGKYLGTTS------FDKTWRLWDVDTGVELLLQEGHSR----------------------- 412 (579)
Q Consensus 366 ~~h~----~~I~~l~~sp~~~~l~s~s------~dg~I~lwd~~~~~~~~~~~~~~~----------------------- 412 (579)
.... ..+++--.--++ .+++++ .+|.|..+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 3211 011111111133 455543 268999999999988765432110
Q ss_pred --------CeE-EEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCCCeEEEEEecCCCCeE---------E
Q 008050 413 --------SVY-GIAFHPDGSLAASCGLD-----A-----------LARVWDLRTGRSILALEGHVKPVL---------G 458 (579)
Q Consensus 413 --------~V~-~l~~spdg~~l~sg~~d-----g-----------~I~iwd~~~~~~~~~~~~~~~~I~---------s 458 (579)
.+. .+++.+...+++.+..+ + .|.-.|+++|+....++.....+. -
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 111 23566655666655422 2 677789999999888765332222 2
Q ss_pred EEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEe--C----------CCC-Ce------------------------
Q 008050 459 ISFSPNGY---HLATGGEDNTCRIWDLRKRKSLYVIP--A----------HSN-LI------------------------ 498 (579)
Q Consensus 459 i~~sp~g~---~l~tgs~Dg~I~iwDl~~~~~~~~~~--~----------~~~-~V------------------------ 498 (579)
+.+..+|+ .++.+..+|.+++.|-++++.+...+ . ..+ ++
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~G 385 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLG 385 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcC
Confidence 23334665 77889999999999999998763210 0 000 00
Q ss_pred ----EEEEEeeCCCeEEEEEE--------------------------------CCCEEEEEECCCCeEEEEecCCCCcEE
Q 008050 499 ----SQVKFEPQEGYFLVTGS--------------------------------YDMTVKVWSGRDFKLVKSLSGHEAKVT 542 (579)
Q Consensus 499 ----~~v~~sp~~~~~l~sgs--------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~ 542 (579)
..++++|..+.+++-.. .-|.|.-+|+.+++.+-..........
T Consensus 386 g~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~ 465 (527)
T TIGR03075 386 GKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWG 465 (527)
T ss_pred CCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCC
Confidence 11445554222222111 125577788888887776643221112
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 543 SLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 543 ~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+. +.-.+.+++.++.||.++.+|.++++.+..+++
T Consensus 466 ~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 466 GV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 22 222456777888899999999999998877654
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.37 E-value=0.00016 Score=75.54 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=143.5
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----C----
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD----G---- 359 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~----~---- 359 (579)
.|+.+.|+++..-|++|...|.|.||.+...+... ......-..+.|.+- ...++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999875433221 000001111111110 0011112222211 1
Q ss_pred --CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe--c------CCCCeEEEEEcC-----CC-
Q 008050 360 --SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE--G------HSRSVYGIAFHP-----DG- 423 (579)
Q Consensus 360 --~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~--~------~~~~V~~l~~sp-----dg- 423 (579)
.....+....+.|++++.+.- .++++|..+|.+.|.|++....+.... . ....++++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 123344556789999999844 499999999999999997776665422 1 234577888763 33
Q ss_pred --CEEEEEeCCCeEEEEeCC--C-CeEEE----EEecCCCCeEEEE-EcCC-C-------------------CEEEEEeC
Q 008050 424 --SLAASCGLDALARVWDLR--T-GRSIL----ALEGHVKPVLGIS-FSPN-G-------------------YHLATGGE 473 (579)
Q Consensus 424 --~~l~sg~~dg~I~iwd~~--~-~~~~~----~~~~~~~~I~si~-~sp~-g-------------------~~l~tgs~ 473 (579)
-++++|+..|.+.+|.+- . +.... ....+.++|..|. |+.+ | ..+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 378899999999999775 1 22111 1124556666665 3211 1 12333344
Q ss_pred CCcEEEEECCCCceeEEEeCCCCCeEEEEEe----eCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC----CcEEEEE
Q 008050 474 DNTCRIWDLRKRKSLYVIPAHSNLISQVKFE----PQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE----AKVTSLD 545 (579)
Q Consensus 474 Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~s----p~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~ 545 (579)
+..++|+..-+.+..+...........+++- ..++..|++-..+|.|++|.+...+.+..+..+. ..+....
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 6779999998887776655322233444453 2247788888999999999999999888776532 2345667
Q ss_pred EcCCCCEEEEEEcCCeEEEEEc
Q 008050 546 IHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 546 ~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
++++|..++-.|. ..+.+|.+
T Consensus 314 is~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SS-SEEEEEEE
T ss_pred ECCCCCEEEEeCc-ccEEEEEE
Confidence 8889997766653 34444444
No 340
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1.4e-06 Score=58.89 Aligned_cols=39 Identities=28% Similarity=0.597 Sum_probs=36.6
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 318 LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
++.+.++.+|.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.36 E-value=0.00019 Score=76.07 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=120.3
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEE-ECCCCcEE
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW-DVDTGVEL 404 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw-d~~~~~~~ 404 (579)
........+.++|+|+++++ +.||...|+...+..... .+.-..++|...+ .+++-..+++|.++ +++... .
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~-~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV-V 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-T
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-c
Confidence 34556789999999999988 556777788733322222 2333678898855 56666668889996 332222 1
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 405 LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 405 ~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
..+.. ...+..|-. |.+|+..+.+ .|.+||..+++.+..+... +|..+.|+++|.+++..+.+ .+.|++...
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 11111 112333322 7777777644 8999999999999988744 38999999999999998755 688887543
Q ss_pred C-----------ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEE
Q 008050 485 R-----------KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSI 553 (579)
Q Consensus 485 ~-----------~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L 553 (579)
. ..+..+..-...|.+.+|.. .-++.+.. . .++.+--.....+..+ ..++.=+.+.+..+.|
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~--d~fiYtT~-~-~lkYl~~Ge~~~i~~l---d~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVE--DCFIYTTS-N-HLKYLVNGETGIIAHL---DKPLYLLGYLPKENRL 247 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEET--TEEEEE-T-T-EEEEEETTEEEEEEE----SS--EEEEEETTTTEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEc--CEEEEEcC-C-eEEEEEcCCcceEEEc---CCceEEEEEEccCCEE
Confidence 2 02333332246688888984 34444433 3 6776432222233333 3456677777777889
Q ss_pred EEEEcCCeEEEEEcC
Q 008050 554 ATVSHDRWIKLWSTR 568 (579)
Q Consensus 554 ~s~s~Dg~I~iW~~~ 568 (579)
+....|+.|..+.+.
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 999999999888775
No 342
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.30 E-value=0.0012 Score=70.35 Aligned_cols=240 Identities=19% Similarity=0.149 Sum_probs=137.8
Q ss_pred CeeEEEEcCCCCEEEEE-ecCC----eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC-----------c
Q 008050 288 PLSGCSYSHDGNLLATS-SLSG----VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR-----------T 351 (579)
Q Consensus 288 ~I~~~~~spdg~~latg-s~dg----~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg-----------~ 351 (579)
.+..+++||+|++||.+ +..| .|+++|+.+++.+...-.. .....+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999999876 3334 5999999999876542111 1123499999988877765443 3
Q ss_pred EEEEeCCCCe---eEEEecccCC--eEEEEEecCCCEEEEEeCC----CeEEEEECCCC-----cEEEEEecCCCCeEEE
Q 008050 352 ARLWNTDGSL---LNTFQGHLDR--LARMAFHPSGKYLGTTSFD----KTWRLWDVDTG-----VELLLQEGHSRSVYGI 417 (579)
Q Consensus 352 I~iwd~~~~~---~~~~~~h~~~--I~~l~~sp~~~~l~s~s~d----g~I~lwd~~~~-----~~~~~~~~~~~~V~~l 417 (579)
|+.|.+.... ...+...... ...+..++++++|+..+.. ..+++.|+..+ ..........+..+.+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 6777765432 2344443333 5678899999988765433 45888888774 3333333333444444
Q ss_pred EEcCCCCEEEEEe---CCCeEEEEeCCCCeE---EEEEecCCC--CeEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCc
Q 008050 418 AFHPDGSLAASCG---LDALARVWDLRTGRS---ILALEGHVK--PVLGISFSPNGYHLATG-GEDN--TCRIWDLRKRK 486 (579)
Q Consensus 418 ~~spdg~~l~sg~---~dg~I~iwd~~~~~~---~~~~~~~~~--~I~si~~sp~g~~l~tg-s~Dg--~I~iwDl~~~~ 486 (579)
... .+.+++... ..+.|...++.+... ...+-.+.. .+..+.. .+.+|+.. ..++ .|++||+..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 444 444444443 246777788877652 224444544 3445544 34344444 4444 58899998344
Q ss_pred eeEEEeC-CCCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECCCCeEE
Q 008050 487 SLYVIPA-HSNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGRDFKLV 531 (579)
Q Consensus 487 ~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~~~~~~ 531 (579)
....+.. ..+.|..+...+.+..++++.++ -++++.||+.+++..
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4444443 33445666655555555554443 267888888887643
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0034 Score=65.95 Aligned_cols=261 Identities=13% Similarity=0.110 Sum_probs=168.8
Q ss_pred EEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEeccc-CCeEEEEEecCCCEEEEE
Q 008050 310 VKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDGSLLNTFQGHL-DRLARMAFHPSGKYLGTT 387 (579)
Q Consensus 310 I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~h~-~~I~~l~~sp~~~~l~s~ 387 (579)
+.+++..+......+..+. ....+...+++..+.... ....+...+...........-. ..-..+.+++.+..++..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5566655555555544333 556677777775544433 2224544443322222211111 334577888888855554
Q ss_pred e-CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC
Q 008050 388 S-FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL---DALARVWDLRTGRSILALEGHVKPVLGISFSP 463 (579)
Q Consensus 388 s-~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~---dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp 463 (579)
. .++.|.+.|..+.......... .....+++++++..+..+.. ++.+.+.|..+++.+........+ ..++++|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 4 4589999998776666554322 25678999999987766655 689999999999888875544445 8999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceeE-E----EeCCCCCeEEEEEeeCCCeEEEEEECC--CEEEEEECCCCeEEEEec
Q 008050 464 NGYHLATGG-EDNTCRIWDLRKRKSLY-V----IPAHSNLISQVKFEPQEGYFLVTGSYD--MTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 464 ~g~~l~tgs-~Dg~I~iwDl~~~~~~~-~----~~~~~~~V~~v~~sp~~~~~l~sgs~d--g~I~iwd~~~~~~~~~l~ 535 (579)
+|..+++.. .++.|.++|........ . +..+ ..-..+.+++++.+..++...+ +.+...|..++.....-.
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 999776665 78899999976655442 1 2222 2235688899866555555444 699999999888776522
Q ss_pred CCCC-cEEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCCccc
Q 008050 536 GHEA-KVTSLDIHPDEQSIATVSH-DRWIKLWSTRNKGDEH 574 (579)
Q Consensus 536 ~h~~-~V~~l~~s~dg~~L~s~s~-Dg~I~iW~~~~~~~~~ 574 (579)
.-.. ....+.++|+|.++.+... .+.+.+-|..+.....
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 1111 4567889999999888744 4788888877655443
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.28 E-value=0.00071 Score=65.99 Aligned_cols=199 Identities=17% Similarity=0.251 Sum_probs=120.9
Q ss_pred EEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 364 TFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGH-SRSVYGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
.+.+-...+..+.|+|+.+ ++++....+.|..++.. |+.+..+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999755 56666677889888874 6666655432 3568889998888777777679999999884
Q ss_pred CCe------EEEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEE--------eCCCCCeE
Q 008050 442 TGR------SILALE-----GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK---RKSLYVI--------PAHSNLIS 499 (579)
Q Consensus 442 ~~~------~~~~~~-----~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~---~~~~~~~--------~~~~~~V~ 499 (579)
... ....+. .++..+-.++|++.++.|+++....-..||.++. ...+... ......++
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112221 2455689999999887888887776667776653 2222211 11334588
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC---------CcEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE---------AKVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
.+.++|..+++++.+..+..|..+| .+|+.+..+.-.. ...-.|+|.++|+ |+..+.-+.+++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999999899999999999999999 6777766554222 2468899999986 5555566666655
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0027 Score=66.67 Aligned_cols=259 Identities=20% Similarity=0.182 Sum_probs=165.7
Q ss_pred CeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCeeEEEE-eCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCeeEE
Q 008050 288 PLSGCSYSHDGNLLATSS-LSGVVKIWSMPRLQKFSAL-KGHTERATDVTFSPVSNHV-ATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs-~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l-~s~s~dg~I~iwd~~~~~~~~ 364 (579)
....+.+.+++..+.... ....+.+.+.. ....... ..-...-..+..++.+..+ ++...++.|.+.|.....+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455667788885444433 33345555544 2222221 1111334567788887754 445556899999965544443
Q ss_pred EecccCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSF---DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDL 440 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~---dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~ 440 (579)
...-......+.++++++.++++.. ++++.+.|..+++..........+ ..+++.|+|..++.+. .++.|.+.|.
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 3333336678999999988877766 689999999988887774333334 8899999999666555 7899999997
Q ss_pred CCCeEEE-E---EecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEE-EeCCCCCeEEEEEeeCCCeEEE
Q 008050 441 RTGRSIL-A---LEGHVKPVLGISFSPNGYHLATGGED---NTCRIWDLRKRKSLYV-IPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 441 ~~~~~~~-~---~~~~~~~I~si~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
....... . .......-..+.++++|.++++.... +.+...|..++..... +.........+.++|++..+.+
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv 269 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYV 269 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEE
Confidence 7665543 1 01112234678999999877666543 5899999988877665 2222214566889998555444
Q ss_pred EEECCCEEEEEECCCCeEEEEecCCCC---cEEEEEEcC
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLSGHEA---KVTSLDIHP 548 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~s~ 548 (579)
.-+..+.+.+.|..+......+..... .+..+++.+
T Consensus 270 ~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 270 ANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 445568999999988887776643322 344555544
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.23 E-value=0.00089 Score=66.89 Aligned_cols=226 Identities=12% Similarity=0.121 Sum_probs=133.5
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-----------
Q 008050 338 PVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL----------- 406 (579)
Q Consensus 338 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~----------- 406 (579)
..++.|+.|+.+| +.+++...........+...|..+...++-+.|++-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3568899999998 8888873222222222233399999998887776665 59999999876433321
Q ss_pred ---EecCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEeCCCC-----eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008050 407 ---QEGHSRSVYGIA--FHPDGSLAASCGLDALARVWDLRTG-----RSILALEGHVKPVLGISFSPNGYHLATGGEDNT 476 (579)
Q Consensus 407 ---~~~~~~~V~~l~--~spdg~~l~sg~~dg~I~iwd~~~~-----~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~ 476 (579)
.......+..++ -...+...++......|.+|..... +....+.. ...+.+++|. ++.|+.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCCc-
Confidence 112223444444 1123333444444558888877653 34455543 3668899998 55788887554
Q ss_pred EEEEECCCCceeEEEeCCC------------CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE--EecCCCCcEE
Q 008050 477 CRIWDLRKRKSLYVIPAHS------------NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK--SLSGHEAKVT 542 (579)
Q Consensus 477 I~iwDl~~~~~~~~~~~~~------------~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~--~l~~h~~~V~ 542 (579)
..+.|+.++.....+.... .++..+.+. ++.+|++. |..-.+.|. .|+... .+.- ...+.
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~ 232 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQ 232 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchh
Confidence 8889998766544432211 223333333 24566543 333333443 443332 2221 23456
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 543 SLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 543 ~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
++.+. ..||+..+. +.|.||++.+++..+.++.
T Consensus 233 ~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 66664 458877765 4599999999998887764
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=6.1e-07 Score=93.96 Aligned_cols=196 Identities=18% Similarity=0.242 Sum_probs=132.8
Q ss_pred CCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEecCC-CEEEEEe----CCCeEEEEE
Q 008050 328 TERATDVTFSPVS--NHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHPSG-KYLGTTS----FDKTWRLWD 397 (579)
Q Consensus 328 ~~~V~~l~~sp~~--~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp~~-~~l~s~s----~dg~I~lwd 397 (579)
...+.|++++-+. .++++|..+|.|.+-..... ......++....++++|++-. +.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4457777776544 46888999999999885432 233455677888999999854 4555553 357899999
Q ss_pred CCCCcE----EEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 008050 398 VDTGVE----LLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSP-NGYHLAT 470 (579)
Q Consensus 398 ~~~~~~----~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp-~g~~l~t 470 (579)
+.++-. ...+. +......+++|..+.+++++|.....+.++|+|.. .....+ ....+..+.++| .+.|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 988621 11121 24455668899989999999999999999999843 222222 223456677888 7778776
Q ss_pred EeCCCcEEEEE-CCCCc-eeEEEeCCCC----CeEEEEEeeCCCeEEEEEEC-CCEEEEEECC
Q 008050 471 GGEDNTCRIWD-LRKRK-SLYVIPAHSN----LISQVKFEPQEGYFLVTGSY-DMTVKVWSGR 526 (579)
Q Consensus 471 gs~Dg~I~iwD-l~~~~-~~~~~~~~~~----~V~~v~~sp~~~~~l~sgs~-dg~I~iwd~~ 526 (579)
.. ||.|.+|| .++-+ ++..+....+ .+..++|+|.....+++.+. .++|++||+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 65 99999999 44433 2222222222 38899999986666666665 5789999864
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.20 E-value=0.00037 Score=73.89 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=113.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNT 364 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~ 364 (579)
.-....+.++|+|++++++ .+|...||.......... +.-...+|.. .+.+++-...+.|.|+. .++.....
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccceE
Confidence 3457889999999999995 488888888555444332 3345688988 45577777788999974 54443333
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG- 443 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~- 443 (579)
+... ..+..+-. |..|+..+.+ .|.+||+.+++.+...... .|..+.|+++|.+++..+.+ .+.|++....
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~ 176 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEA 176 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence 3322 12233322 7777776655 8999999999988887533 38999999999999988755 5666654322
Q ss_pred ----------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 444 ----------RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 444 ----------~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
.....+......|.+.+|..+ .|+-.+.. .|+.+ ..|.. .++..-..++.-+.+.+. ...++.
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~-~~~ly~ 249 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLPK-ENRLYL 249 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEETT-TTEEEE
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEcc-CCEEEE
Confidence 022333322456888888766 33333333 56652 23322 122222344555556553 334555
Q ss_pred EECCCEEEEEEC
Q 008050 514 GSYDMTVKVWSG 525 (579)
Q Consensus 514 gs~dg~I~iwd~ 525 (579)
...|+.|..+.+
T Consensus 250 ~Dr~~~v~~~~l 261 (443)
T PF04053_consen 250 IDRDGNVISYEL 261 (443)
T ss_dssp E-TT--EEEEE-
T ss_pred EECCCCEEEEEE
Confidence 556666666654
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.19 E-value=0.0021 Score=64.26 Aligned_cols=227 Identities=16% Similarity=0.106 Sum_probs=131.5
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE-----------
Q 008050 296 HDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT----------- 364 (579)
Q Consensus 296 pdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~----------- 364 (579)
..++.|+.|+.+| +++|+.........+. +...|..+...++-+.|++-+ |+.+.+++++.-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578999999888 8999983333222222 233499999998877776665 4999999954311111
Q ss_pred ----EecccCCeEEEE--EecCCCEEEEEeCCCeEEEEECCCC-----cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 365 ----FQGHLDRLARMA--FHPSGKYLGTTSFDKTWRLWDVDTG-----VELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 365 ----~~~h~~~I~~l~--~sp~~~~l~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
.......+..++ -...+...++.....+|.+|..... .....+ .....+.+++|. ++.++.|..++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCCc
Confidence 111222334444 1223444444555568888887653 222333 344778899998 45777776544
Q ss_pred eEEEEeCCCCeEEEEEecC------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeCCCCCeE
Q 008050 434 LARVWDLRTGRSILALEGH------------VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY--VIPAHSNLIS 499 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~------------~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~--~~~~~~~~V~ 499 (579)
..+.|+.++.....+... ..++..+... ++.+|++. |..-.+.|. .|+... .+.-. ....
T Consensus 159 -f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~-~~p~ 232 (275)
T PF00780_consen 159 -FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS-SAPQ 232 (275)
T ss_pred -eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC-Cchh
Confidence 678898876554333211 1234444444 34555543 333444454 444333 33332 3455
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE 538 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 538 (579)
.+.+.. . ||++.+ ++.|.||++.++++++.+...+
T Consensus 233 ~~~~~~--p-yli~~~-~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 233 SVAYSS--P-YLIAFS-SNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEEC--C-EEEEEC-CCEEEEEECcCCcEEEEEECCC
Confidence 666653 3 444444 4569999999999998887543
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.19 E-value=1.5e-05 Score=84.85 Aligned_cols=198 Identities=16% Similarity=0.193 Sum_probs=126.0
Q ss_pred cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE--
Q 008050 369 LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS-- 445 (579)
Q Consensus 369 ~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~-- 445 (579)
...|.--++...+++++.|+.-|.+++|+-..+....... +..+.+..+.++++..+++.|+..|.|.++-+..+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555677789999999999999999988877665544 2334566677888888999999999999998876421
Q ss_pred -EEE--E-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 446 -ILA--L-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR----KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 446 -~~~--~-~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~----~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
+.. + +.|...|++++|++|+..+++|...|+|.+-.+... .....+....+.|-.+.+. .+.+|++...-
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh
Confidence 111 1 236788999999999999999999999999888762 1222333345667667665 35556554433
Q ss_pred CEEEEEECCCC--eEEEEecCCCC-cEEEEEEcCC----CCEEEEEEcCCeEEEEEcCCCCc
Q 008050 518 MTVKVWSGRDF--KLVKSLSGHEA-KVTSLDIHPD----EQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 518 g~I~iwd~~~~--~~~~~l~~h~~-~V~~l~~s~d----g~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
. .+++.... +.+..-. ..+ .-...+|-+. .+-.+.++.-| .++|..+-.+.
T Consensus 191 ~--~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~ 248 (726)
T KOG3621|consen 191 C--ILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGE 248 (726)
T ss_pred h--heeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeeccee
Confidence 2 23333222 2221111 111 1233344332 23345555555 78887765443
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.16 E-value=0.0015 Score=69.08 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=107.4
Q ss_pred cEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-------ecCCCCeEEEEEcCCC
Q 008050 351 TARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-------EGHSRSVYGIAFHPDG 423 (579)
Q Consensus 351 ~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-------~~~~~~V~~l~~spdg 423 (579)
.|.||+..|+.+..+.-..+.|.++.|..+ ..|++...||.+++||+.... ...+ .-....+....+..+|
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 599999999988887766689999999875 567777899999999986333 1111 0111112222333355
Q ss_pred CEEEEEeCCCeEEEEeCCCCe-EEEEEec----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 008050 424 SLAASCGLDALARVWDLRTGR-SILALEG----------HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP 492 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~-~~~~~~~----------~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~ 492 (579)
.++ -..++.+.+.+--... ....+.. +........++.+....+....++.+.+.+-...+. +.
T Consensus 140 -ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 -IVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred -EEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 222 2334444443221111 1111100 000000022333444444444445555444322211 22
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC-CCcEEEEEEcCCCC
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH-EAKVTSLDIHPDEQ 551 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~ 551 (579)
..+.+..+++||+ +.+++.-..+|.+.+.+..-.+.+..+... ......+.|.-++.
T Consensus 215 -~~~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 215 -SDGPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -CCCCeEEEEECCC-CCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 2367999999996 788888888999999987656666666533 34567777875543
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.0034 Score=66.43 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=77.6
Q ss_pred eEEEEEcC-CCCEEEEEe----CCCc----EEEEECCCCce--eEEE-eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 456 VLGISFSP-NGYHLATGG----EDNT----CRIWDLRKRKS--LYVI-PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 456 I~si~~sp-~g~~l~tgs----~Dg~----I~iwDl~~~~~--~~~~-~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
..++.|+- +++.+.+-. .+|. -.+|++..++. +... -.....+.+++++|+ ...|+.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~-E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS-EDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc-cceEEEEecCCeEEEE
Confidence 35666665 444554432 2332 34566654332 2111 134677899999996 7788999999999999
Q ss_pred ECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 524 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
|...+... +..+.-..+.++|+|+|.+|++|+..|.|.+||+.-.
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 98766433 2234456789999999999999999999999998643
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.16 E-value=0.0063 Score=64.72 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=134.2
Q ss_pred eEEEEEccCCCEEEEE-eCCC----cEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCC-----------eEE
Q 008050 331 ATDVTFSPVSNHVATS-SADR----TARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK-----------TWR 394 (579)
Q Consensus 331 V~~l~~sp~~~~l~s~-s~dg----~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg-----------~I~ 394 (579)
+..+.++|+|++++.+ +..| .|+++|+.++....-.-.......+.|.++++.|+....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4467899999998765 3344 59999986653322111111223499999988777665433 388
Q ss_pred EEECCCCcE--EEEEecCCC-C-eEEEEEcCCCCEEEEEeC---C-CeEEEEeCCCC----eEEEEEecCCCCe-EEEEE
Q 008050 395 LWDVDTGVE--LLLQEGHSR-S-VYGIAFHPDGSLAASCGL---D-ALARVWDLRTG----RSILALEGHVKPV-LGISF 461 (579)
Q Consensus 395 lwd~~~~~~--~~~~~~~~~-~-V~~l~~spdg~~l~sg~~---d-g~I~iwd~~~~----~~~~~~~~~~~~I-~si~~ 461 (579)
+|.+.+... ..++..... . ...+..+.|+++++.... + ..+.+.|+..+ .....+......+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 888877643 244443333 3 678889999998775443 2 45788888875 2333333333333 34444
Q ss_pred cCCCCEEEEEe---CCCcEEEEECCCCce---eEEEeCCCCC--eEEEEEeeCCCeEEEEEECCC--EEEEEECCCCeEE
Q 008050 462 SPNGYHLATGG---EDNTCRIWDLRKRKS---LYVIPAHSNL--ISQVKFEPQEGYFLVTGSYDM--TVKVWSGRDFKLV 531 (579)
Q Consensus 462 sp~g~~l~tgs---~Dg~I~iwDl~~~~~---~~~~~~~~~~--V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~~ 531 (579)
. ++.+++... ..+.|...++..... ...+..+... +..+... ++.+++....++ .|++|++..+...
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEE
Confidence 4 443443332 345777788877652 3245555553 4444443 566777666665 4888898833333
Q ss_pred EEe-cCCCCcEEEEEEcCCCCEEE-EE-Ec--CCeEEEEEcCCCCc
Q 008050 532 KSL-SGHEAKVTSLDIHPDEQSIA-TV-SH--DRWIKLWSTRNKGD 572 (579)
Q Consensus 532 ~~l-~~h~~~V~~l~~s~dg~~L~-s~-s~--Dg~I~iW~~~~~~~ 572 (579)
..+ ..-.+.|..+...++++.+. +. |. -++++.||+.+++.
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333 32344466666556555533 22 22 36788889888764
No 354
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=0.00084 Score=70.89 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=81.6
Q ss_pred CeEEEEEecC-CCEEEEE----eCCC----eEEEEECCCCcEEE---EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 371 RLARMAFHPS-GKYLGTT----SFDK----TWRLWDVDTGVELL---LQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 371 ~I~~l~~sp~-~~~l~s~----s~dg----~I~lwd~~~~~~~~---~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
...++.|+.. ...+.+. +.+| ..++|++..++... +.-.....+.|++++|+...++.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 3456667663 3344432 2233 35677776554322 222567789999999999999999999999999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
|...+..... ...-..+.++|+|+|..|++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9877643322 33445789999999999999999999999998643
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.15 E-value=0.0014 Score=63.93 Aligned_cols=198 Identities=15% Similarity=0.273 Sum_probs=116.2
Q ss_pred EEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEecc-cCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 008050 323 ALKGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLLNTFQGH-LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h-~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~ 400 (579)
.+.+-...+..|+|+|+.+ ++++....+.|..++.+|+.+..+.-. .+..-.+++..++.++++.-.++.+.++++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3455566799999999866 555666678888889988888776543 36678899988887777766789999998843
Q ss_pred Cc----E--EEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeEEEEE--------ecCCCCeEE
Q 008050 401 GV----E--LLLQ-----EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT---GRSILAL--------EGHVKPVLG 458 (579)
Q Consensus 401 ~~----~--~~~~-----~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~---~~~~~~~--------~~~~~~I~s 458 (579)
.. . ...+ ..++..+-.++|.+.++.|+.+-...-..+|.++. ...+... ......+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 21 1 1111 13456789999999887777777776666666653 2222111 123445889
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeCCC---------CCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 459 ISFSPN-GYHLATGGEDNTCRIWDLRKRKSLYVIPAHS---------NLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 459 i~~sp~-g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~---------~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
++++|. |++++.+..+..|.++| .+|+.+..+.... ..--.|+|.++ |.+.++ +.-+..++|
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~-G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD-GNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEE-ETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCC-CCEEEE-cCCceEEEe
Confidence 999994 56667777888899999 6788777665433 23667899986 544443 455555554
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=7.2e-07 Score=93.42 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=130.2
Q ss_pred eEEEEEecCC--CEEEEEeCCCeEEEEECCCCcE--EEEEecCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEeCCC
Q 008050 372 LARMAFHPSG--KYLGTTSFDKTWRLWDVDTGVE--LLLQEGHSRSVYGIAFHP-DGSLAASCG----LDALARVWDLRT 442 (579)
Q Consensus 372 I~~l~~sp~~--~~l~s~s~dg~I~lwd~~~~~~--~~~~~~~~~~V~~l~~sp-dg~~l~sg~----~dg~I~iwd~~~ 442 (579)
+.|+++..+. ..+++|..+|.|.+-..+...- .....++...+++++|++ |.+.|+.|- .|..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 4455544433 4788889999999988765322 233446778899999998 566777664 367899999987
Q ss_pred C--eE--EEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEEC
Q 008050 443 G--RS--ILALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 443 ~--~~--~~~~~~-~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
+ .+ -..|.+ ......++||..+.+.+.+|.....+.++|+|... ....+ ....+..+.++|-.+.|+++..
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-
Confidence 6 21 122222 33456689999999999999999999999998422 22222 2345666788886677777654
Q ss_pred CCEEEEEE-CCCCe-EEEEecCCCC----cEEEEEEcCCCC-EEEEEEc-CCeEEEEEcCCC
Q 008050 517 DMTVKVWS-GRDFK-LVKSLSGHEA----KVTSLDIHPDEQ-SIATVSH-DRWIKLWSTRNK 570 (579)
Q Consensus 517 dg~I~iwd-~~~~~-~~~~l~~h~~----~V~~l~~s~dg~-~L~s~s~-Dg~I~iW~~~~~ 570 (579)
||.|.+|| ..+.+ ++..+..... .+..++|+|... .+++... .++|+++++..-
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 99999999 44433 2222222222 389999999432 3555554 478999998643
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.11 E-value=0.007 Score=62.00 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=130.0
Q ss_pred EEEcCCCCEEEEEec-CC--eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE-Eec
Q 008050 292 CSYSHDGNLLATSSL-SG--VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT-FQG 367 (579)
Q Consensus 292 ~~~spdg~~latgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~ 367 (579)
=+|..||+.|+.++. +| .+++.|+.+++..+--.+-........++++++.++-...+..|+-.|+.+..... +..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 468889976666554 44 57777888887765544332333356677888888766666788888876654433 333
Q ss_pred ccCCeEEEEEe--cCCCEEEEEeC----------------------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCC
Q 008050 368 HLDRLARMAFH--PSGKYLGTTSF----------------------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG 423 (579)
Q Consensus 368 h~~~I~~l~~s--p~~~~l~s~s~----------------------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg 423 (579)
....+....|. .++..++..-. ...|.-.|+.+|+....+. ....+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 33333334443 34554433211 2356777888887666554 34567889999954
Q ss_pred -CEEEEEeC---CCe-EEEEeCCC-CeEEEEEecCC--CCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeEE
Q 008050 424 -SLAASCGL---DAL-ARVWDLRT-GRSILALEGHV--KPVLGISFSPNGYHLATGG-----EDNTCRIWDLRKRKSLYV 490 (579)
Q Consensus 424 -~~l~sg~~---dg~-I~iwd~~~-~~~~~~~~~~~--~~I~si~~sp~g~~l~tgs-----~Dg~I~iwDl~~~~~~~~ 490 (579)
.+|+.|-+ +.. -+||-+++ +.....+..+. ..+..=-|.++|..|..-+ .+..|.-+|+.++.....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 45555543 221 25554443 33333332222 2234445899998766533 244677788887765433
Q ss_pred EeCCCCCeEEEEEeeCCCeEEEEEECCC----------------EEEEEECCCCeEEEE---------ecCCCC-cEEEE
Q 008050 491 IPAHSNLISQVKFEPQEGYFLVTGSYDM----------------TVKVWSGRDFKLVKS---------LSGHEA-KVTSL 544 (579)
Q Consensus 491 ~~~~~~~V~~v~~sp~~~~~l~sgs~dg----------------~I~iwd~~~~~~~~~---------l~~h~~-~V~~l 544 (579)
... .....+..+++ +.+++.-+.|. -|+++++..+..... +.++.. .=-..
T Consensus 280 ~~~--p~~~H~~ss~D-g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp 356 (386)
T PF14583_consen 280 MEM--PWCSHFMSSPD-GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHP 356 (386)
T ss_dssp EEE---SEEEEEE-TT-SSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----
T ss_pred EeC--CceeeeEEcCC-CCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCC
Confidence 222 12334445554 56655434332 466778876654311 111111 12467
Q ss_pred EEcCCCCEE-EEEEcCCeEEEEEcC
Q 008050 545 DIHPDEQSI-ATVSHDRWIKLWSTR 568 (579)
Q Consensus 545 ~~s~dg~~L-~s~s~Dg~I~iW~~~ 568 (579)
.|+|||++| +++...|...||-+.
T Consensus 357 ~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 357 SFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccCCCCCEEEEECCCCCCccEEEEe
Confidence 899999985 455577877777553
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00051 Score=72.57 Aligned_cols=192 Identities=15% Similarity=0.094 Sum_probs=112.9
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCCEEEEEeC---C-CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEe-CCC-
Q 008050 318 LQKFSALKGHTERATDVTFSPVSNHVATSSA---D-RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTS-FDK- 391 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~---d-g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg- 391 (579)
+.....+......+..-.|++++..++..+. . ..+.+++++......+-...+.-..-.|+|+|++|+.+. .||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 3444444555567778889999887654422 2 358888876644443333444445678999999776554 455
Q ss_pred -eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 008050 392 -TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG-LDAL--ARVWDLRTGRSILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 392 -~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~--I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
.|+++|+.++.... +....+.-..=.|+|||+.++..+ ..|. |.++|...+.. ..+....+.-..-.|+|+|++
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCE
Confidence 46777887776444 222222223567999999777655 4454 56666665544 333323222337789999999
Q ss_pred EEEEeCC-Cc--EEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 468 LATGGED-NT--CRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 468 l~tgs~D-g~--I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
|+..+.. |. |.+.|+.++..+..+. +......-.|.+++..++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 9887743 44 6667776655433332 2233344556665333333
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.0026 Score=64.22 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=131.5
Q ss_pred EEEccCCCE-EEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe----
Q 008050 334 VTFSPVSNH-VATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE---- 408 (579)
Q Consensus 334 l~~sp~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~---- 408 (579)
..|.++... +++--..+.|.-|+........+.........+.+. .+..|+++. ..+.+++.+++..+....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 346666654 444445678888886655455554433333333344 444455443 335566666555522221
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCc
Q 008050 409 G-HSRSVYGIAFHPDGSLAASCGL---------DALARVWDLR-TGRSILALEGHVKPVLGISFSPNGYHLATGGE-DNT 476 (579)
Q Consensus 409 ~-~~~~V~~l~~spdg~~l~sg~~---------dg~I~iwd~~-~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~-Dg~ 476 (579)
+ .....+.+...|+|.+.++... ...-.+|-+. .+..+..+..+-..-+.|+|||+++.|+.... .+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 1 1245667889999987765444 1112344444 56666666665666788999999988877764 477
Q ss_pred EEEEECCC------Cc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC-EEEEEECCCCeEEEEecCCCCcEEEEEEcC
Q 008050 477 CRIWDLRK------RK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM-TVKVWSGRDFKLVKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 477 I~iwDl~~------~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 548 (579)
|.-|++.. ++ ....+..+.+..-.++...+ +++.+++..+| .|.+|+.. ++++..+......+++++|--
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 88887752 11 12223334566677888876 55554444443 89999987 999999887767889999853
Q ss_pred -CCCEEEEEE
Q 008050 549 -DEQSIATVS 557 (579)
Q Consensus 549 -dg~~L~s~s 557 (579)
+.+.|+..+
T Consensus 265 ~~~~~L~iTs 274 (307)
T COG3386 265 PDLNTLYITS 274 (307)
T ss_pred CCcCEEEEEe
Confidence 445554443
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.04 E-value=0.0015 Score=68.39 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=121.2
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-------------------------------------------EEEEE
Q 008050 371 RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-------------------------------------------ELLLQ 407 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-------------------------------------------~~~~~ 407 (579)
.|+.+.|.++..-|+++...|.|.+|.....+ ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 46788888888888888888888877542210 11122
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec--------CCCCeEEEEEcC-----CC---CEEEEE
Q 008050 408 EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG--------HVKPVLGISFSP-----NG---YHLATG 471 (579)
Q Consensus 408 ~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~--------~~~~I~si~~sp-----~g---~~l~tg 471 (579)
....+.|++++.+.-| +++.|..+|.+.|.|+|....+..-.. ....|+++.|+- |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999998555 999999999999999998887766321 223578888863 33 478899
Q ss_pred eCCCcEEEEECCC---Cce----eEEEeCCCCCeEEEE-EeeCC--------------------CeEEEEEECCCEEEEE
Q 008050 472 GEDNTCRIWDLRK---RKS----LYVIPAHSNLISQVK-FEPQE--------------------GYFLVTGSYDMTVKVW 523 (579)
Q Consensus 472 s~Dg~I~iwDl~~---~~~----~~~~~~~~~~V~~v~-~sp~~--------------------~~~l~sgs~dg~I~iw 523 (579)
+..|.+.+|.+.- +.. ......+.+.|..+. ++.+. ..+++++ .+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEE
Confidence 9999999998751 111 111223555655555 32211 1244443 46679999
Q ss_pred ECCCCeEEEEecCCCCcEEEEEEc-----CCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 524 SGRDFKLVKSLSGHEAKVTSLDIH-----PDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 524 d~~~~~~~~~l~~h~~~V~~l~~s-----~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
...+.+..++.....-....+.+- ..+..|++-..+|.|++|.+..-+....+.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 998887766655332233444452 356678888999999999999877665544
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.00035 Score=73.86 Aligned_cols=203 Identities=18% Similarity=0.147 Sum_probs=120.8
Q ss_pred CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeC---C-CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 350 RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF---D-KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~---d-g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
+.+.+-|.++.....+......+..-+|++++..++..+. . ..+.++|++++....... ..+.-..-.|+|||+.
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 3445555556666666666667778889999986554432 2 469999999886655443 2233345689999997
Q ss_pred EEEE-eCCCe--EEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeCCCCCeE
Q 008050 426 AASC-GLDAL--ARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE-DN--TCRIWDLRKRKSLYVIPAHSNLIS 499 (579)
Q Consensus 426 l~sg-~~dg~--I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~-Dg--~I~iwDl~~~~~~~~~~~~~~~V~ 499 (579)
|+.+ ..||. |.++|+.++.... +....+.-..=.|+|+|++|+..+. .| .|.++|+..... ..+....+.-.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 6554 45664 6666877766333 4433333336679999998887764 34 467777765543 33333333333
Q ss_pred EEEEeeCCCeEEEEEECCCE--EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE
Q 008050 500 QVKFEPQEGYFLVTGSYDMT--VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~--I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 556 (579)
.-.|+|++..+++.+..+|. |.++|+.++..+..+. +......-+|.++|..|...
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 67899985555555544455 6666766555333332 22223344556666554433
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.02 E-value=0.01 Score=64.98 Aligned_cols=238 Identities=14% Similarity=0.137 Sum_probs=141.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC-eEEEEEcc--CCCEEEEEeC------CCcEEEEeC-CCCeeEEEec
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTER-ATDVTFSP--VSNHVATSSA------DRTARLWNT-DGSLLNTFQG 367 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~sp--~~~~l~s~s~------dg~I~iwd~-~~~~~~~~~~ 367 (579)
+..+++++.+|.|.-+|..+++.+......... -..+.-+| .+..+++++. +|.|.-+|. +++.+..+..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 356778888999999999999998776431100 00111111 1234555432 578888884 4444433221
Q ss_pred c-------------------------------cCCeE-EEEEecCCCEEEEEeCC-----C-----------eEEEEECC
Q 008050 368 H-------------------------------LDRLA-RMAFHPSGKYLGTTSFD-----K-----------TWRLWDVD 399 (579)
Q Consensus 368 h-------------------------------~~~I~-~l~~sp~~~~l~s~s~d-----g-----------~I~lwd~~ 399 (579)
- ...+. .+.+.+...+++.+..+ + +|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 1 01111 23566656666655421 2 67888999
Q ss_pred CCcEEEEEecCCCCeEE---------EEEcCCCC---EEEEEeCCCeEEEEeCCCCeEEEE--------Ee---c-CC-C
Q 008050 400 TGVELLLQEGHSRSVYG---------IAFHPDGS---LAASCGLDALARVWDLRTGRSILA--------LE---G-HV-K 454 (579)
Q Consensus 400 ~~~~~~~~~~~~~~V~~---------l~~spdg~---~l~sg~~dg~I~iwd~~~~~~~~~--------~~---~-~~-~ 454 (579)
+|+....+......+.. +.+..+|+ .++.++.+|.+.+.|-++|+.+.. +. . .. .
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 99988776543222222 22334665 788999999999999999987622 10 0 00 0
Q ss_pred Ce----------------------------EEEEEcCCCCEEEEEeCC--------------------------------
Q 008050 455 PV----------------------------LGISFSPNGYHLATGGED-------------------------------- 474 (579)
Q Consensus 455 ~I----------------------------~si~~sp~g~~l~tgs~D-------------------------------- 474 (579)
++ ..++++|+..+++....+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 00 124566655455443322
Q ss_pred -CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC
Q 008050 475 -NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537 (579)
Q Consensus 475 -g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 537 (579)
|.|.-||+.+++.+...........+.... .+.+++.++.+|.++.+|.++++.+..++..
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457778888888887765432222222122 2456777888999999999999999888654
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.96 E-value=0.0023 Score=66.52 Aligned_cols=220 Identities=20% Similarity=0.243 Sum_probs=130.9
Q ss_pred ccCCCEEEEEe---------CCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 008050 337 SPVSNHVATSS---------ADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ 407 (579)
Q Consensus 337 sp~~~~l~s~s---------~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~ 407 (579)
|||+++++... ..+.+.+||++......+......+....|+|+|+.++... ++.|++++..++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 46666666532 24678999988887777766677889999999999988875 678999998877555432
Q ss_pred e-cC----------------CCCeEEEEEcCCCCEEEEEeCCC------------------------------------e
Q 008050 408 E-GH----------------SRSVYGIAFHPDGSLAASCGLDA------------------------------------L 434 (579)
Q Consensus 408 ~-~~----------------~~~V~~l~~spdg~~l~sg~~dg------------------------------------~ 434 (579)
. +. -+.-..+-|+|||+.|+....|- .
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~ 159 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS 159 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE
Confidence 2 20 11234678999999888653221 2
Q ss_pred EEEEeCCCCeEEE-EEe----cCCCCeEEEEEcCCCCEEEEEe--CCC---cEEEEECCCCceeEEEeC-CCCC---eEE
Q 008050 435 ARVWDLRTGRSIL-ALE----GHVKPVLGISFSPNGYHLATGG--EDN---TCRIWDLRKRKSLYVIPA-HSNL---ISQ 500 (579)
Q Consensus 435 I~iwd~~~~~~~~-~~~----~~~~~I~si~~sp~g~~l~tgs--~Dg---~I~iwDl~~~~~~~~~~~-~~~~---V~~ 500 (579)
+.|+|+.+++... ... ....-+..+.|.+++..|+..- .+. .+.++|..++.+...+.. ..+. -..
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 3345555554321 111 2233477889999888444433 222 467778877655433322 2222 234
Q ss_pred EEEe-eCCCeEEEEEECCCE--EEEEECCCCeEEEEecCCCCcEEE-EEEcCCCCEEE-EEEc
Q 008050 501 VKFE-PQEGYFLVTGSYDMT--VKVWSGRDFKLVKSLSGHEAKVTS-LDIHPDEQSIA-TVSH 558 (579)
Q Consensus 501 v~~s-p~~~~~l~sgs~dg~--I~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~-s~s~ 558 (579)
..|. +++..+|.....+|. |++++...+. ...+....-.|+. +.|+++++.|+ ++..
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 5555 667778877777775 5555665555 4466555556755 67788877764 4443
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0032 Score=64.55 Aligned_cols=210 Identities=9% Similarity=0.115 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCeeEEEEeC-CCCCeEEEE---EccC----CCEEEEEeC---------C-CcEEEEeCCCC-----eeEE
Q 008050 308 GVVKIWSMPRLQKFSALKG-HTERATDVT---FSPV----SNHVATSSA---------D-RTARLWNTDGS-----LLNT 364 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~-h~~~V~~l~---~sp~----~~~l~s~s~---------d-g~I~iwd~~~~-----~~~~ 364 (579)
+.|++.|..+.+.+..+.- ....+.+++ +..+ ..+|++|+. . |.|.++++... .+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4578888888777766543 233444443 3322 467777754 2 88999996552 3332
Q ss_pred E--ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 365 F--QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-ELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 365 ~--~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
+ ....+.|++++-. ++ +|+++ .++.|.+|++...+ ....-. .....+.++... ++++++|+....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2 3456788888877 34 44443 46899999998877 333322 223356666655 559999998888887754
Q ss_pred CC-CeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------Cc-e---eEEEeCCCCCeEEE---EE
Q 008050 441 RT-GRSILAL--EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-------RK-S---LYVIPAHSNLISQV---KF 503 (579)
Q Consensus 441 ~~-~~~~~~~--~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-------~~-~---~~~~~~~~~~V~~v---~~ 503 (579)
+. +..+..+ ......++++.|-.+++.++++..+|.+.++.... +. . ...+.. ...|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccceEEEEEe
Confidence 43 3323222 22345588999986667999999999999997752 22 2 222322 3456666 33
Q ss_pred ee--CCC-----eEEEEEECCCEEEEE
Q 008050 504 EP--QEG-----YFLVTGSYDMTVKVW 523 (579)
Q Consensus 504 sp--~~~-----~~l~sgs~dg~I~iw 523 (579)
.+ .+. ..++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 34 111 247777888888744
No 365
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.90 E-value=0.016 Score=64.70 Aligned_cols=279 Identities=14% Similarity=0.132 Sum_probs=165.9
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCC--CCeeEEEE--eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMP--RLQKFSAL--KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~--~~~~~~~l--~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~ 362 (579)
+.|.-..|--|+.+|.++..||.+.-|.+. ++..-..- .--..++.--.|+..+..-+.+..|.=..+|..+++.+
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence 355556666778899999999998877654 33322211 12344666666766666555566677677777666654
Q ss_pred EEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCC-------
Q 008050 363 NTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHPDGSLAASCGLD------- 432 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V~~l~~spdg~~l~sg~~d------- 432 (579)
.+--..+.--.-+.|+.+ ...|+++ ..+.+++.-+..-+.+... -.-......+++++...++++.+..
T Consensus 664 ~spls~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 664 YSPLSLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred EeccchHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhh
Confidence 432221111111223222 2234444 3455666655443322211 1223345566777644444444321
Q ss_pred -------CeEEEEeCCCCeEEEEEecCC----CCeEEEEEcCC-CCEEEEEe----------CCCcEEEEECCCCceeEE
Q 008050 433 -------ALARVWDLRTGRSILALEGHV----KPVLGISFSPN-GYHLATGG----------EDNTCRIWDLRKRKSLYV 490 (579)
Q Consensus 433 -------g~I~iwd~~~~~~~~~~~~~~----~~I~si~~sp~-g~~l~tgs----------~Dg~I~iwDl~~~~~~~~ 490 (579)
..++++|-++.+.+...+... ..|.++.|..+ +.++++|+ ..|.|.||.+..++.+..
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 246777776666554433211 23555568877 77888876 247788887766444443
Q ss_pred EeCC--CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 491 IPAH--SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 491 ~~~~--~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
...+ .+.+..+..- ++.+++ +-+..|++|+..+.+.+..-..|..++..+.+.-.|..++.|..-++|.+...+
T Consensus 823 v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 823 VAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 3222 2444444433 467666 446689999998888887778888999999999999999999988888887765
Q ss_pred CC
Q 008050 569 NK 570 (579)
Q Consensus 569 ~~ 570 (579)
..
T Consensus 899 ~~ 900 (1096)
T KOG1897|consen 899 GD 900 (1096)
T ss_pred cc
Confidence 43
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.88 E-value=0.00084 Score=75.05 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=98.5
Q ss_pred CCEEEEE-ecCCeEEEEeCCCCeeEEEEeCCCCC-eEEEEEcc-----CCCEEEEEeCCCcEEEEe--CCCCeeEEEe--
Q 008050 298 GNLLATS-SLSGVVKIWSMPRLQKFSALKGHTER-ATDVTFSP-----VSNHVATSSADRTARLWN--TDGSLLNTFQ-- 366 (579)
Q Consensus 298 g~~latg-s~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~sp-----~~~~l~s~s~dg~I~iwd--~~~~~~~~~~-- 366 (579)
.++|+.. .....|+-.|++.|+.+..++.|... |..++=.. .....+.|-.++.+..|| +.+..+..-.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999987754 55554321 134567788889999999 4443222211
Q ss_pred --cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 367 --GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 367 --~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
......+|++-..+| +|++|+.+|.|++||-....-...+.+.+.+|.+|+.+.||+++++.+ +.+|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 234456777777666 899999999999999543333334456788999999999999888665 567777765
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.014 Score=58.95 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=135.1
Q ss_pred EEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEec---
Q 008050 293 SYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQG--- 367 (579)
Q Consensus 293 ~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~--- 367 (579)
.|.++.. ++++--..+.|.-|+..+++... +. +.+.+.++.....+..|+++.. -+.+++.+ +.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 4777766 55555677889999887654332 22 3334455555555555655543 24555543 222122211
Q ss_pred --ccCCeEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC
Q 008050 368 --HLDRLARMAFHPSGKYLGTTSF-----------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-DA 433 (579)
Q Consensus 368 --h~~~I~~l~~sp~~~~l~s~s~-----------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-dg 433 (579)
.....+.+.+.|+|.+.+.... -|.|+.+|. .+........+-..-+.|+|+||++.|+.+.. .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 2245678889999986665443 144555554 45666666565666778999999987766655 47
Q ss_pred eEEEEeCCC--C----e-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 434 LARVWDLRT--G----R-SILALEGHVKPVLGISFSPNGYHLATGGEDN-TCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 434 ~I~iwd~~~--~----~-~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg-~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
.|.-|++.. + + ....+....+..-.++...+|++.+++..+| .|.+|+.. ++.+..+......+++++|--
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 888887752 1 1 1222333455667788888998776555554 89999987 999999988877888888863
Q ss_pred C-CCeEEEEEEC
Q 008050 506 Q-EGYFLVTGSY 516 (579)
Q Consensus 506 ~-~~~~l~sgs~ 516 (579)
. ...+++++..
T Consensus 265 ~~~~~L~iTs~~ 276 (307)
T COG3386 265 PDLNTLYITSAR 276 (307)
T ss_pred CCcCEEEEEecC
Confidence 2 2344444443
No 368
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.74 E-value=0.046 Score=57.30 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=62.3
Q ss_pred EEEEcCCCCEEEEEecCCeEEE---EeCC-----CCeeEEEEeC---CC--CCeEEEEEcc-----------CCCEEEEE
Q 008050 291 GCSYSHDGNLLATSSLSGVVKI---WSMP-----RLQKFSALKG---HT--ERATDVTFSP-----------VSNHVATS 346 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~i---wd~~-----~~~~~~~l~~---h~--~~V~~l~~sp-----------~~~~l~s~ 346 (579)
.++.++++++|+.+..+..+.+ |+.. .........+ +. ..|+++.|-| +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4578999999999987776665 5431 1112222221 22 5788877754 35689999
Q ss_pred eCCCcEEEEeCCCCeeEEEecccCCeEEEEEec
Q 008050 347 SADRTARLWNTDGSLLNTFQGHLDRLARMAFHP 379 (579)
Q Consensus 347 s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp 379 (579)
..+|.|++|..+|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999998887777777888888877654
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=3.5e-05 Score=71.89 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=90.6
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeCCCCCeEEEE
Q 008050 425 LAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-SLYVIPAHSNLISQVK 502 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~~~~~~V~~v~ 502 (579)
.+...+.+|.|+-++++..+....-. .+... .....-+..+++|+.+|.|++|...... ....+......|.++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 34445667777777776543221111 11111 1122235678999999999999886321 1111122223333333
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC-CcEEEEEEcCCCCEEEEE--EcCCeEEEEEcCCCC
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE-AKVTSLDIHPDEQSIATV--SHDRWIKLWSTRNKG 571 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~--s~Dg~I~iW~~~~~~ 571 (579)
-.-+.+.+.++++.||.|+.|++.-.+.+.....|. ..+..+..+..+++|.++ |.|..++.|++..-.
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 333345688999999999999999998888887787 566666667777777777 788888888876543
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.72 E-value=0.0082 Score=61.52 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=107.6
Q ss_pred CCEEEEEec---------C-CeEEEEeCCCC----eeEEEE--eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 008050 298 GNLLATSSL---------S-GVVKIWSMPRL----QKFSAL--KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL 361 (579)
Q Consensus 298 g~~latgs~---------d-g~I~iwd~~~~----~~~~~l--~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~ 361 (579)
..+|++|+. . |.|.+|++... ..+..+ ....++|++++-. +.+|+++. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence 578888864 2 89999999884 222222 2357889999877 34454444 4889999966554
Q ss_pred -eEEEecccC--CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 362 -LNTFQGHLD--RLARMAFHPSGKYLGTTSFDKTWRLWDVDT-GVELLLQ--EGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 362 -~~~~~~h~~--~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-~~~~~~~--~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
+.....+.. .+.++... ++++++|.....+.++.... ...+... ......++++.|-.+++.+++++.+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 444433333 45555554 77999999988888875543 2222222 2345568888998666799999999999
Q ss_pred EEEeCCC-------C--eEEEEEecC-CCCeEEE---EEcC--CC------CEEEEEeCCCcEEEE
Q 008050 436 RVWDLRT-------G--RSILALEGH-VKPVLGI---SFSP--NG------YHLATGGEDNTCRIW 480 (579)
Q Consensus 436 ~iwd~~~-------~--~~~~~~~~~-~~~I~si---~~sp--~g------~~l~tgs~Dg~I~iw 480 (579)
.++.... + +.......| ...|+++ ++.+ .+ ..++.++.+|.|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9987752 2 222222222 3447776 4444 22 247788888988843
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0012 Score=73.93 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=99.7
Q ss_pred CCCEEEEE-eCCCeEEEEeCCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc-eeEEEe-
Q 008050 422 DGSLAASC-GLDALARVWDLRTGRSILALEGHVKP-VLGISFSP-----NGYHLATGGEDNTCRIWDLRKRK-SLYVIP- 492 (579)
Q Consensus 422 dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~-I~si~~sp-----~g~~l~tgs~Dg~I~iwDl~~~~-~~~~~~- 492 (579)
+.++|+.. .....|+-.|+..|+.+..++.+... |..++-.. +....++|-.++.+..||.|-.. .+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 35688999999999999999987754 55544321 23456778888999999998632 222111
Q ss_pred ---CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 493 ---AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 493 ---~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
......+|++-.. ..+||.|+.+|.|++||--..+....+.+...+|.+|+.+.||+||+..+ +..|.+++..
T Consensus 572 k~Y~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTE--DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred cccccCCCceEEEecC--CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 1234566666654 55789999999999999433333334567788999999999999987766 5568887753
No 372
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.63 E-value=0.069 Score=52.07 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=120.9
Q ss_pred eEEEEEecCCCEEEEEeCCC--eEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE
Q 008050 372 LARMAFHPSGKYLGTTSFDK--TWRLWDVDTGVELLLQEGHS-RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA 448 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~s~dg--~I~lwd~~~~~~~~~~~~~~-~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~ 448 (579)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ----.++... +.++...=.++...+||..+.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 35677866787777777665 79999999998776554222 2223445543 34555666789999999999999988
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-----CCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 449 LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-----NLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 449 ~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
+... +.-..++. +|..|+.+.....|+++|..+.+....+.... ..++.+.|. +|.+.+=.-....|...
T Consensus 126 ~~y~-~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 126 FPYP-GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EE-S-SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEE
T ss_pred EecC-CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEE
Confidence 8644 45567774 66778877778899999998888777765432 346677777 47777766677889999
Q ss_pred ECCCCeEEEEecC------------C---CCcEEEEEEcCCCCEEEEEE
Q 008050 524 SGRDFKLVKSLSG------------H---EAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 524 d~~~~~~~~~l~~------------h---~~~V~~l~~s~dg~~L~s~s 557 (579)
|..+|+.+..+.. + .+-.+.|++.+.++.|+..|
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9999998876531 1 24579999998777665555
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0028 Score=65.93 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=100.2
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCCC-c-eeEEE
Q 008050 422 DGS-LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY-------HLATGGEDNTCRIWDLRKR-K-SLYVI 491 (579)
Q Consensus 422 dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~-------~l~tgs~Dg~I~iwDl~~~-~-~~~~~ 491 (579)
+.+ +|..+.....++-.|+..|+.+..++.+.. |+-+.+.|+++ .-+.|-.|+.|.-||.|-. + .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444 445566677889999999999999998777 88888888542 2355778899999998842 2 22222
Q ss_pred eCCC----CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 492 PAHS----NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 492 ~~~~----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
..|. ....|.+-. +..+|++||.+|.|++||--...--..+.+...+|..+..+.+|++|+..+ +..|.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2321 223444333 456899999999999999633333345678889999999999999987665 556666665
Q ss_pred C
Q 008050 568 R 568 (579)
Q Consensus 568 ~ 568 (579)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.58 E-value=0.0071 Score=66.74 Aligned_cols=185 Identities=8% Similarity=0.078 Sum_probs=98.7
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeEEE
Q 008050 380 SGKYLGTTSFD------KTWRLWDVDTGVELLLQEGHSR-SVYGIAFHPDGSLAASCGLDA-----LARVWDLRTGRSIL 447 (579)
Q Consensus 380 ~~~~l~s~s~d------g~I~lwd~~~~~~~~~~~~~~~-~V~~l~~spdg~~l~sg~~dg-----~I~iwd~~~~~~~~ 447 (579)
++..+++|+.+ ..+..||..++.......-... .-.+++ .-+|.+.+.||.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56666777753 3578889877654322111111 111222 22677888888764 47889988764321
Q ss_pred --EEecCCCCeEEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCceeEEEeCCCCCe-EEE
Q 008050 448 --ALEGHVKPVLGISFSPNGYHLATGGEDN-----------------------TCRIWDLRKRKSLYVIPAHSNLI-SQV 501 (579)
Q Consensus 448 --~~~~~~~~I~si~~sp~g~~l~tgs~Dg-----------------------~I~iwDl~~~~~~~~~~~~~~~V-~~v 501 (579)
.+.........+.+ +|+..+.|+.++ .+..||..+.+-...-....... .++
T Consensus 382 ~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 382 LPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 11111111112222 677777777542 47778876654321111111111 122
Q ss_pred EEeeCCCeEEEEEECC------CEEEEEECCC---CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC--eEEEEEcCCC
Q 008050 502 KFEPQEGYFLVTGSYD------MTVKVWSGRD---FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR--WIKLWSTRNK 570 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~d------g~I~iwd~~~---~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~I~iW~~~~~ 570 (579)
+.. ++.+.+.|+.+ ..+..||..+ |..+..+.........+.+ +|+..++||.|| ++..||..+.
T Consensus 460 ~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 460 VSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 322 36677777654 2467899765 5666655543333333333 578889999888 6777777654
Q ss_pred C
Q 008050 571 G 571 (579)
Q Consensus 571 ~ 571 (579)
+
T Consensus 536 ~ 536 (557)
T PHA02713 536 E 536 (557)
T ss_pred c
Confidence 3
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.56 E-value=0.0057 Score=67.48 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCeeEEEEcCCCCEEEEEe------cCC--eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---------
Q 008050 287 RPLSGCSYSHDGNLLATSS------LSG--VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD--------- 349 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs------~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d--------- 349 (579)
..+...++|++|+.++... .|+ .|.+++.. +.. ..+.. ....+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999999887765 243 45555542 222 33322 2248889999998887776533
Q ss_pred ---CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEE---EECCCCcEEE-----EEecCCCCeEEEE
Q 008050 350 ---RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRL---WDVDTGVELL-----LQEGHSRSVYGIA 418 (579)
Q Consensus 350 ---g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~l---wd~~~~~~~~-----~~~~~~~~V~~l~ 418 (579)
+.+.+..+++..... ...+.|..+.|+|||..++... ++.|++ -....|.... ........+.++.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 222222333322221 3356799999999999888766 577777 4444454111 1122333468899
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEec--CCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 419 FHPDGSLAASCGLDALARVWDLRT-GRSILALEG--HVKPVLGISFSPNGYHLATGGEDN 475 (579)
Q Consensus 419 ~spdg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~--~~~~I~si~~sp~g~~l~tgs~Dg 475 (579)
|..++.++ ++..++...+|.+.- |.....+.. ...++.+|+-+++ .|+....+|
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 99999855 555555444554332 221111122 2445666666653 455555555
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.54 E-value=0.12 Score=51.94 Aligned_cols=270 Identities=11% Similarity=0.084 Sum_probs=124.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCeeEEEEeC--C---CCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP-RLQKFSALKG--H---TERATDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~-~~~~~~~l~~--h---~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
.-..++..+.|..+..-+++|. .|.| +... .++.-..... . .-...+|.|.. ...+++ +..|.|..-.-
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g~ll~T~D 88 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPGLLLHTTD 88 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETTEEEEESS
T ss_pred CCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCceEEEecC
Confidence 4456899999996666666665 4543 3333 3332222211 1 12366777764 334444 44554333222
Q ss_pred CCCeeEEEe---cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 358 DGSLLNTFQ---GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE-LLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 358 ~~~~~~~~~---~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~-~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
.++.-..+. ...+....+....++ ....++..|.|+.= .+.|+. ......-.+.+..+..++||.+++++....
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 233222221 122333344444344 33334444544332 223332 223334557788999999999998887666
Q ss_pred eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEE--E--eCCCCCeEEEEEeeCCC
Q 008050 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR-KRKSLYV--I--PAHSNLISQVKFEPQEG 508 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~-~~~~~~~--~--~~~~~~V~~v~~sp~~~ 508 (579)
...-||--...-...-......|.+|.|.+++.+.+++ ..|.|++=+.. ....... . ......+..++|.++ +
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~-~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP-N 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS-S
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC-C
Confidence 67778754322222223346779999999998766654 78888887722 1221111 1 122334788999975 5
Q ss_pred eEEEEEECCCEEEEEECCCCe---EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 509 YFLVTGSYDMTVKVWSGRDFK---LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
.+.++|+ .|.+. .....++ .......-.+.++.+.|..+.+-++ .+.+|.|--|
T Consensus 245 ~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 5555544 55433 3444443 3332333455688898876654444 4578877655
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.50 E-value=0.0079 Score=66.37 Aligned_cols=196 Identities=7% Similarity=-0.021 Sum_probs=99.1
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEecccC-CeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCcEEEE
Q 008050 339 VSNHVATSSAD------RTARLWNTDGSLLNTFQGHLD-RLARMAFHPSGKYLGTTSFDK-----TWRLWDVDTGVELLL 406 (579)
Q Consensus 339 ~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~h~~-~I~~l~~sp~~~~l~s~s~dg-----~I~lwd~~~~~~~~~ 406 (579)
++..++.||.+ ..+..||........+..-.. +-......-+|...+.|+.++ ++..||..+..-...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 55667777753 246677755443322221111 111111222577777787754 488899887654332
Q ss_pred EecCC-CCeEEEEEcCCCCEEEEEeCCC-----------------------eEEEEeCCCCeEEEEEecCCCCeEEEEEc
Q 008050 407 QEGHS-RSVYGIAFHPDGSLAASCGLDA-----------------------LARVWDLRTGRSILALEGHVKPVLGISFS 462 (579)
Q Consensus 407 ~~~~~-~~V~~l~~spdg~~l~sg~~dg-----------------------~I~iwd~~~~~~~~~~~~~~~~I~si~~s 462 (579)
-.-.. ..-.+++ .-+|.+.+.||.++ .+..||..+.+-...-.-.......-...
T Consensus 383 ~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~ 461 (557)
T PHA02713 383 PDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS 461 (557)
T ss_pred CCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE
Confidence 11111 1111111 22677788887653 46778877654321111111111111122
Q ss_pred CCCCEEEEEeCC------CcEEEEECCC-Cc--eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC--EEEEEECCCCeEE
Q 008050 463 PNGYHLATGGED------NTCRIWDLRK-RK--SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM--TVKVWSGRDFKLV 531 (579)
Q Consensus 463 p~g~~l~tgs~D------g~I~iwDl~~-~~--~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~~ 531 (579)
-+|++.+.|+.+ ..+..||..+ .+ .+..+........ ++.. ++.+.++|+.+| .+..||..+.+..
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~-~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH-TILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce-eEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 256677777654 2467899876 33 2233332222222 2222 478889999888 7888887766554
Q ss_pred EEecCCC
Q 008050 532 KSLSGHE 538 (579)
Q Consensus 532 ~~l~~h~ 538 (579)
.....|.
T Consensus 539 ~~~~~~~ 545 (557)
T PHA02713 539 HICHQHS 545 (557)
T ss_pred chhhhcC
Confidence 4444444
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.0095 Score=65.70 Aligned_cols=228 Identities=15% Similarity=0.117 Sum_probs=119.0
Q ss_pred cCCCCEEEEEecCC------eEEEEeCCCCeeEEEEeC-CCCCeEEEEEccCCCEEEEEeCC-C-----cEEEEeCCCCe
Q 008050 295 SHDGNLLATSSLSG------VVKIWSMPRLQKFSALKG-HTERATDVTFSPVSNHVATSSAD-R-----TARLWNTDGSL 361 (579)
Q Consensus 295 spdg~~latgs~dg------~I~iwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~s~s~d-g-----~I~iwd~~~~~ 361 (579)
+..+.++++|+.++ .+..||..+..-...-.- +...-.+++.. ++...++||.| | ++..||.....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 44467788888774 577888776633222111 22223344443 45778888888 3 46667754433
Q ss_pred eEEEecccCCeEEEEE-ecCCCEEEEEeCCC-----eEEEEECCCCcEEEEEecCCCCeEEEE-EcCCCCEEEEEeCCC-
Q 008050 362 LNTFQGHLDRLARMAF-HPSGKYLGTTSFDK-----TWRLWDVDTGVELLLQEGHSRSVYGIA-FHPDGSLAASCGLDA- 433 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~-sp~~~~l~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~~V~~l~-~spdg~~l~sg~~dg- 433 (579)
-.....-...-..+.. .-+|...++|+.|| ++-.||..+.+....-.-.. ...+.. ..-+|.+.++||.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence 2222211111111111 12577888899886 47778877664433221111 122222 222677888888654
Q ss_pred -----eEEEEeCCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEeCCCCCeEEE
Q 008050 434 -----LARVWDLRTGRSIL--ALEGHVKPVLGISFSPNGYHLATGGEDN-----TCRIWDLRKRKSLYVIPAHSNLISQV 501 (579)
Q Consensus 434 -----~I~iwd~~~~~~~~--~~~~~~~~I~si~~sp~g~~l~tgs~Dg-----~I~iwDl~~~~~~~~~~~~~~~V~~v 501 (579)
.+..||..+++-.. .+........ ++. -++.+.+.|+.|+ +|..||..+.+-...- .-......+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccc
Confidence 56788887765322 2221111111 222 2677888888776 3777888765543321 111112222
Q ss_pred EEeeCCCeEEEEEECCCE-----EEEEECCC
Q 008050 502 KFEPQEGYFLVTGSYDMT-----VKVWSGRD 527 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~dg~-----I~iwd~~~ 527 (579)
.....++.+.++|+.||. |..||..+
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEcCCCC
Confidence 222225778888887753 55555433
No 379
>PRK10115 protease 2; Provisional
Probab=97.48 E-value=0.32 Score=55.20 Aligned_cols=238 Identities=8% Similarity=0.029 Sum_probs=124.1
Q ss_pred CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC------CcEEEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLS-----GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD------RTARLW 355 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d------g~I~iw 355 (579)
-.+..+.|||||++|+.+... ..|++.|+.++..+...-... -..++|.++++.|+.+..+ ..|+.|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 356778899999999876432 358888998876432221111 1569999999877666543 356677
Q ss_pred eCCCC---eeEEEecccCCeE-EEEEecCCCEEEEEeC---CCeEEEEECC--CCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 356 NTDGS---LLNTFQGHLDRLA-RMAFHPSGKYLGTTSF---DKTWRLWDVD--TGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 356 d~~~~---~~~~~~~h~~~I~-~l~~sp~~~~l~s~s~---dg~I~lwd~~--~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
++.+. ....+........ .+..+.++++++..+. ++.+.+|+.. .+.............+.+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 75543 2223333223333 3333447877665544 3578888842 3332222222222333332 3333333
Q ss_pred EEEeC---CCeEEEEeCCCCeEEEEEecC-C-CCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCCceeEEEe-CCCCCe
Q 008050 427 ASCGL---DALARVWDLRTGRSILALEGH-V-KPVLGISFSPNGYHLATGGEDNTCRI--WDLRKRKSLYVIP-AHSNLI 498 (579)
Q Consensus 427 ~sg~~---dg~I~iwd~~~~~~~~~~~~~-~-~~I~si~~sp~g~~l~tgs~Dg~I~i--wDl~~~~~~~~~~-~~~~~V 498 (579)
+.... ...|...++........+..+ . ..|..+.+. .+.++++...+|.-++ +|+.. ..+..+. .....+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~~~~~~ 361 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT-REVIGIAFDDPAYV 361 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC-CceEEecCCCCceE
Confidence 33322 224444455421222333334 2 357888887 3355566666775444 45432 3344443 222223
Q ss_pred EEEEEe--eCCCeEEEEEEC---CCEEEEEECCCCe
Q 008050 499 SQVKFE--PQEGYFLVTGSY---DMTVKVWSGRDFK 529 (579)
Q Consensus 499 ~~v~~s--p~~~~~l~sgs~---dg~I~iwd~~~~~ 529 (579)
..+.++ ++++.++++.++ -+.++.||..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 333333 333445554443 3778889987764
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.021 Score=63.15 Aligned_cols=206 Identities=13% Similarity=0.132 Sum_probs=112.0
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCeeEEEecccCCeEEEEEe
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS------ADR--TARLWNTDGSLLNTFQGHLDRLARMAFH 378 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s------~dg--~I~iwd~~~~~~~~~~~h~~~I~~l~~s 378 (579)
+|.+.-.+-.....+.-..+....+.+.+++++|+.++... .|+ .|.+++..+.......+. ..+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceEC
Confidence 66665544322222222223334688999999999887665 243 455555544443223332 37888999
Q ss_pred cCCCEEEEEeCC------------CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EeCCCC
Q 008050 379 PSGKYLGTTSFD------------KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV---WDLRTG 443 (579)
Q Consensus 379 p~~~~l~s~s~d------------g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i---wd~~~~ 443 (579)
|+|..|++.... +.+.+.++..+.... ...+.|..+.|+|||..++... +|.|.+ -....|
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG 481 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC
Confidence 998877776533 233333443332221 2345799999999999877665 577776 443445
Q ss_pred eE-E---EEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeCC--CCCeEEEEEeeCCCeEEEEEE
Q 008050 444 RS-I---LALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-RKSLYVIPAH--SNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 444 ~~-~---~~~~~-~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~--~~~V~~v~~sp~~~~~l~sgs 515 (579)
.. + ..+.. -...+.++.|..++.++ ++..++...+|.+.- |.....+... ...+..++-.+ + -++...
T Consensus 482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~-~iyv~~ 557 (591)
T PRK13616 482 QYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--S-TVYVTD 557 (591)
T ss_pred ceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--c-eEEEEc
Confidence 31 1 11222 22336889999998754 555555444554332 2222222221 34455565554 2 244445
Q ss_pred CCCEEEE
Q 008050 516 YDMTVKV 522 (579)
Q Consensus 516 ~dg~I~i 522 (579)
.+|.+.+
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 5654443
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.41 E-value=0.04 Score=51.93 Aligned_cols=205 Identities=11% Similarity=0.045 Sum_probs=111.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCC--cEEEEEe-----cC
Q 008050 341 NHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSG---KYLGTTSFDKTWRLWDVDTG--VELLLQE-----GH 410 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~---~~l~s~s~dg~I~lwd~~~~--~~~~~~~-----~~ 410 (579)
.++.+--..|.|.-||...+.+....-....+.++.+--.+ .+.+.++..-.|.-||.... ....... ..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 34444445577777886655444333222234444443333 23333333334455663222 1111110 11
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEE
Q 008050 411 SRSVYGIAFHPDGSLAASCGLD---------ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT-GGEDNTCRIW 480 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~t-gs~Dg~I~iw 480 (579)
....+.-..+|+|++++-.-.| |.++.|-.. ..+..+.....--+.++|+.+.+.++. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3345566788999884432222 233333321 112222222233456889887766554 4456677667
Q ss_pred E--CCCC-----ceeEEEeC----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC
Q 008050 481 D--LRKR-----KSLYVIPA----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP 548 (579)
Q Consensus 481 D--l~~~-----~~~~~~~~----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 548 (579)
| ..+| +.+..+.. ..-.-..+++.. .|.+.++.-..|+|..+|..+|+.+..+.-....|++++|--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 4443 33333332 111223455555 477888888899999999999999999988889999999964
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.002 Score=72.06 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=77.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCee--EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEE
Q 008050 339 VSNHVATSSADRTARLWNTDGSLL--NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYG 416 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~ 416 (579)
.+..++.|+..|.+...|..+... ..-....++|++++|+.+|..++.|-.+|.|.+||+.+++.+..+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788999999999999777533 333345679999999999999999999999999999999988888776665554
Q ss_pred E---EEcCCCCEEEEEeCCCeEEEEeC
Q 008050 417 I---AFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 417 l---~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
+ .+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 44456667888887776 4543
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.40 E-value=0.0099 Score=49.70 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=69.2
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE
Q 008050 456 VLGISFSP---NG-YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 456 I~si~~sp---~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
|+++++.. +| +.|++|+.|..|++|+ ....+..+... ..|++++-.. ...|+.+..+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeCc--cee
Confidence 56666655 32 6899999999999997 45677777654 5677777664 4568888999999999852 333
Q ss_pred EEecCCCCcEEEEEEcC---CCC-EEEEEEcCCeEEE
Q 008050 532 KSLSGHEAKVTSLDIHP---DEQ-SIATVSHDRWIKL 564 (579)
Q Consensus 532 ~~l~~h~~~V~~l~~s~---dg~-~L~s~s~Dg~I~i 564 (579)
...+. ...++++.+.. ||. -|++|-.+|.|-+
T Consensus 75 WRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 34432 23366666543 332 4888888888743
No 384
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.39 E-value=0.046 Score=62.07 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=120.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 008050 381 GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRS--------VYGIAFHP----------------DGSLAASCGLDALAR 436 (579)
Q Consensus 381 ~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~--------V~~l~~sp----------------dg~~l~sg~~dg~I~ 436 (579)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888889999999999888776532211 11223221 234788899999999
Q ss_pred EEeCCCCeEEEEEecCCCCe-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceeEEE
Q 008050 437 VWDLRTGRSILALEGHVKPV-------------LGISFSP--NGYHLATGGE----------DNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I-------------~si~~sp--~g~~l~tgs~----------Dg~I~iwDl~~~~~~~~~ 491 (579)
-.|.++|+.+..+... +.| ..+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998776421 111 1111222 2345666643 688999999999998877
Q ss_pred eCC---------CCC--------e-EEEEEeeCCCeEEEE-E----------------ECCCEEEEEECCCCeEEEEecC
Q 008050 492 PAH---------SNL--------I-SQVKFEPQEGYFLVT-G----------------SYDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 492 ~~~---------~~~--------V-~~v~~sp~~~~~l~s-g----------------s~dg~I~iwd~~~~~~~~~l~~ 536 (579)
... .+. + ..+++++..+.+++- | .+.+.|.-.|.++++..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 531 000 1 223444432222221 1 1235677778888988877754
Q ss_pred CCCcE---------EEEEEcC-CCC---EEEEEEcCCeEEEEEcCCCCccccc
Q 008050 537 HEAKV---------TSLDIHP-DEQ---SIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 537 h~~~V---------~~l~~s~-dg~---~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
....+ .-+.+.. +|+ .|+.++.+|.++++|-.+++.+..+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 11111 1122332 553 7899999999999999998877654
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.13 Score=50.13 Aligned_cols=235 Identities=17% Similarity=0.185 Sum_probs=137.5
Q ss_pred CeEEEEEccCCC-EEEEEeCCCc-EEEEeCCCC-eeEEEecccCC--eEEEEEecCCCEEEEEeCC-----CeEEEEECC
Q 008050 330 RATDVTFSPVSN-HVATSSADRT-ARLWNTDGS-LLNTFQGHLDR--LARMAFHPSGKYLGTTSFD-----KTWRLWDVD 399 (579)
Q Consensus 330 ~V~~l~~sp~~~-~l~s~s~dg~-I~iwd~~~~-~~~~~~~h~~~--I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~ 399 (579)
....|.|+|... -++.+-.-|+ ..++|.++. ....+...+++ .-.=.||++|.+|+..-+| |.|-+||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 344577777543 3555555453 456775542 22222111111 1123689999999887655 789999997
Q ss_pred CC-cEEEEEecCCCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEeCCCCeEEEEEe----cCCCCe
Q 008050 400 TG-VELLLQEGHSRSVYGIAFHPDGSLAASCGL------------------DALARVWDLRTGRSILALE----GHVKPV 456 (579)
Q Consensus 400 ~~-~~~~~~~~~~~~V~~l~~spdg~~l~sg~~------------------dg~I~iwd~~~~~~~~~~~----~~~~~I 456 (579)
.+ +.+-.+..|.-.-..+.|.+||+.++.+.. .-.+.+.|..+|..+.+.. .+.-.|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 54 344456677777788999999998887632 0123344444554443221 234458
Q ss_pred EEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEEEeCC-------CCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 457 LGISFSPNGYHLATGGEDNT-----CRIWDLRKRKSLYVIPAH-------SNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~-----I~iwDl~~~~~~~~~~~~-------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
..++..+||..++.+-..|. -.+=-.+.++.+..+... .+.|-+++.+.+.+...+++-..+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88888888876655443321 111122344554444322 345777888876566666666678899999
Q ss_pred CCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 525 GRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 525 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
..++..+..-.-- .+..+.-. ..-++..+.+|.|.++.-.
T Consensus 309 a~tG~vv~~a~l~--daaGva~~--~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 309 AATGAVVSEAALP--DAAGVAAA--KGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred cCCCcEEeccccc--ccccceec--cCceEEecCCceEEecccc
Confidence 9999887554321 12233332 3335566668888877543
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.079 Score=50.03 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=119.7
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEE-EeCCCCCeEEEEEccCC---CEEEEEeCCCcEEEEeCCCC---eeEEEe----
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSA-LKGHTERATDVTFSPVS---NHVATSSADRTARLWNTDGS---LLNTFQ---- 366 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~sp~~---~~l~s~s~dg~I~iwd~~~~---~~~~~~---- 366 (579)
+.++.+--..|.|.-||+.+.+.... +.+ ..+.++.+--.+ .+.+.++..-.|--||.... ...++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 44556655677777798876444332 222 223333332222 23333333334455663222 122211
Q ss_pred -cccCCeEEEEEecCCCEEEEEeCC---------CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCeE
Q 008050 367 -GHLDRLARMAFHPSGKYLGTTSFD---------KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA-ASCGLDALA 435 (579)
Q Consensus 367 -~h~~~I~~l~~sp~~~~l~s~s~d---------g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l-~sg~~dg~I 435 (579)
..+.+.+.-..+|+|++++-.-.| |.++.|-.... +......-.--+.++|+.+.+.+ ++-+.+-.|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 124456777789999984432222 44555543221 11111222334568888877644 555667778
Q ss_pred EEEe--CCCC-----eEEEEEec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEe
Q 008050 436 RVWD--LRTG-----RSILALEG----HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE 504 (579)
Q Consensus 436 ~iwd--~~~~-----~~~~~~~~----~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~s 504 (579)
.-|| ..+| +.+..++. ..-.--.+++.-.|++.++.-..|+|..+|..+|+.+..+......|++++|-
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 7787 4444 23333332 11112345667788888888889999999999999999999989999999997
Q ss_pred eCCCeEEEE
Q 008050 505 PQEGYFLVT 513 (579)
Q Consensus 505 p~~~~~l~s 513 (579)
-.+-.+|++
T Consensus 263 Gkn~d~~yv 271 (310)
T KOG4499|consen 263 GKNLDILYV 271 (310)
T ss_pred CCCccEEEE
Confidence 432234433
No 387
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.18 Score=49.27 Aligned_cols=270 Identities=11% Similarity=0.058 Sum_probs=149.8
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe----eEE
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL----LNT 364 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~----~~~ 364 (579)
+..+.++ +++...+.++.-++|.|+.+......+..-.-.=.+-.|.-.|++..++..|.-+.+.|+.... ...
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 3444554 5677788888889999998765544333211112233444468999888877777788865422 223
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
+......-..++.+ |++-..+..|+-+.+.|+.......... .....++++..+++-.+++.. +--+.+-|..+
T Consensus 167 ya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~ 242 (370)
T COG5276 167 YALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSG 242 (370)
T ss_pred eccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCC
Confidence 33333333456665 8889999999999999997754333221 223367788777765454443 44566777766
Q ss_pred CeEEEEEecC-CCCeEEE-EEcCCCCEEEEEeCCCcEEEEECCCCceeE---EEeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 443 GRSILALEGH-VKPVLGI-SFSPNGYHLATGGEDNTCRIWDLRKRKSLY---VIPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 443 ~~~~~~~~~~-~~~I~si-~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~---~~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
.+....+... ...+.++ .|.-.+++......+.-+.+.|+.+...-. .+......-..+... +.++..+..+
T Consensus 243 ~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn 319 (370)
T COG5276 243 PSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN 319 (370)
T ss_pred CCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC
Confidence 5544333211 1112222 233345666666667777777775432111 111111122223322 2333333333
Q ss_pred CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 518 MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 518 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
...+-+...-+......+....+.+.+.+-+.+.+.+...++.+.||+..
T Consensus 320 -~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 320 -TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred -ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 33344443333333333333334555556667788899999999999863
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00073 Score=43.69 Aligned_cols=39 Identities=44% Similarity=0.684 Sum_probs=34.4
Q ss_pred CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
++++..+..|...|.++.|++++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455667778889999999999999999999999999996
No 389
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0012 Score=70.04 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 008050 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVL-GISFSPNGYHLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~-si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
...+.-+.|+|.-.++|.+..+|.|.++.+. .+.+.++..+...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999998999999999999999987 788888887887887 99999999999999999999999999988877
Q ss_pred EEeC-CCCCeEEEEEee
Q 008050 490 VIPA-HSNLISQVKFEP 505 (579)
Q Consensus 490 ~~~~-~~~~V~~v~~sp 505 (579)
.+.. -...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 6422 245677777764
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.29 E-value=0.36 Score=54.46 Aligned_cols=280 Identities=13% Similarity=0.109 Sum_probs=145.5
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE-------EEEeCCCCCeEEEEEccC----CCEEEEEeC--
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF-------SALKGHTERATDVTFSPV----SNHVATSSA-- 348 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~-------~~l~~h~~~V~~l~~sp~----~~~l~s~s~-- 348 (579)
..|...-..|+.+-+ ..+|++|+.-|.=++-.+.+.... .++. .-++|..++.-.. +..+++|+.
T Consensus 302 ~lge~siassi~~L~-ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~ 379 (1096)
T KOG1897|consen 302 YLGETSIASSINYLD-NGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAF 379 (1096)
T ss_pred ecCCcchhhhhhccc-CceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCC
Confidence 334444444555444 457888888777677766543322 2222 3357777776542 245666653
Q ss_pred -CCcEEEEeC----CCCeeEEEecccCCeEEEE--EecCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 008050 349 -DRTARLWNT----DGSLLNTFQGHLDRLARMA--FHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFH 420 (579)
Q Consensus 349 -dg~I~iwd~----~~~~~~~~~~h~~~I~~l~--~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~s 420 (579)
||++++... +.-....+.| ...++.+. +.++- ++|+.+-.+ .-++..+...-......+.......+..+
T Consensus 380 kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S 457 (1096)
T KOG1897|consen 380 KDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCS 457 (1096)
T ss_pred CCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEE
Confidence 799999872 2223333444 34556666 43322 255554433 33444443221111111222222233333
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--CCCCC
Q 008050 421 P-DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP--AHSNL 497 (579)
Q Consensus 421 p-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~--~~~~~ 497 (579)
. .|+.|+=.+ ...|++++-. .....+.... .++....+.|...++.++.++.+...++..+. +.... .....
T Consensus 458 ~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~e 532 (1096)
T KOG1897|consen 458 TINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYE 532 (1096)
T ss_pred ccCCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecce
Confidence 2 222222221 2345666543 1223333222 34444444555677777777777777776555 22221 22466
Q ss_pred eEEEEEeeC--CCe---EEEEEECCCEEEEEE-CCCCeEEEEe--cCC--CCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 498 ISQVKFEPQ--EGY---FLVTGSYDMTVKVWS-GRDFKLVKSL--SGH--EAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 498 V~~v~~sp~--~~~---~l~sgs~dg~I~iwd-~~~~~~~~~l--~~h--~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
|.|+.++|- +.+ +++.|.++..+.+.- ..+...+... .+. ...|.-..|-.|..+|.++..||.+.-|.+
T Consensus 533 vaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 533 VACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred eEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 888888864 333 888888876655543 3444433322 111 122445556667889999999999987766
Q ss_pred CCC
Q 008050 568 RNK 570 (579)
Q Consensus 568 ~~~ 570 (579)
...
T Consensus 613 d~~ 615 (1096)
T KOG1897|consen 613 DIN 615 (1096)
T ss_pred Ecc
Confidence 543
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.065 Score=52.41 Aligned_cols=167 Identities=15% Similarity=0.228 Sum_probs=114.0
Q ss_pred eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecc-cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Q 008050 325 KGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGH-LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV 402 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h-~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~ 402 (579)
.+-...|.++.|+|+.+.|++......-.+|= .+|..+.++.-. ....-.+.+..+|++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 45556699999999999998888877666664 778777765421 2344567888888888888888999988876653
Q ss_pred EEEEE---------ecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE---Eec-------CCCCeEEEEEc
Q 008050 403 ELLLQ---------EGH-SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA---LEG-------HVKPVLGISFS 462 (579)
Q Consensus 403 ~~~~~---------~~~-~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~---~~~-------~~~~I~si~~s 462 (579)
..... ..+ +...-.++|.+....|+.+-...-+.||.+..+..... ... ....|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 122 56678899999988888888888777777654331111 111 12347788888
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 008050 463 P-NGYHLATGGEDNTCRIWDLRKRKSLYVIP 492 (579)
Q Consensus 463 p-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~ 492 (579)
+ ++..|+-+.+++.+.-.|.. |..+..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 7 56667777788888888864 55444443
No 392
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0014 Score=69.38 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=78.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLA-RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~-~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~ 406 (579)
...|.-+.|+|.-.++|++..+|.|.+...+-..+.++..+...++ +++|.|||+.|++|-.||+|++.|++++..+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 3468889999999999999999999999988888888887877777 999999999999999999999999999877655
Q ss_pred E-ecCCCCeEEEEEc
Q 008050 407 Q-EGHSRSVYGIAFH 420 (579)
Q Consensus 407 ~-~~~~~~V~~l~~s 420 (579)
. ......|.++-|.
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 2 1233456666665
No 393
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.019 Score=48.11 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=69.8
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 008050 414 VYGIAFHP---DG-SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 414 V~~l~~sp---dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
|++|++.. || +.|++|+.|..|++|+- ...+..+... ..|++++-... ..|+.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 45555544 33 48999999999999974 3566666644 44778877766 56888999999999984 44555
Q ss_pred EEeCCCCCeEEEEEee---CCCeEEEEEECCCEEEE
Q 008050 490 VIPAHSNLISQVKFEP---QEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp---~~~~~l~sgs~dg~I~i 522 (579)
.++.... +.++.+.. ++..-|++|-.+|.|-+
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5554333 55555543 23346888888888753
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.23 E-value=0.028 Score=62.06 Aligned_cols=223 Identities=16% Similarity=0.207 Sum_probs=117.7
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCeeEEEec--ccCCeEEEEEecCCCEEEEEeCC------CeEEEEECCCCcEEE
Q 008050 340 SNHVATSSAD------RTARLWNTDGSLLNTFQG--HLDRLARMAFHPSGKYLGTTSFD------KTWRLWDVDTGVELL 405 (579)
Q Consensus 340 ~~~l~s~s~d------g~I~iwd~~~~~~~~~~~--h~~~I~~l~~sp~~~~l~s~s~d------g~I~lwd~~~~~~~~ 405 (579)
+.+++.||.+ ..+..||........+.. ....-.++++. ++...++|+.| .++..||..+++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4555666665 356677754442222211 11122344444 45778888888 367889988776443
Q ss_pred EEecCCCCe-EEEEEcCCCCEEEEEeCCCe-----EEEEeCCCCeEEEEEecCCCCeEEEEE-cCCCCEEEEEeCCC---
Q 008050 406 LQEGHSRSV-YGIAFHPDGSLAASCGLDAL-----ARVWDLRTGRSILALEGHVKPVLGISF-SPNGYHLATGGEDN--- 475 (579)
Q Consensus 406 ~~~~~~~~V-~~l~~spdg~~l~sg~~dg~-----I~iwd~~~~~~~~~~~~~~~~I~si~~-sp~g~~l~tgs~Dg--- 475 (579)
.-.-..... .+++ .-+|.+.++||.||. +-.||..+.+--..-. ......+... .-+|...++|+.++
T Consensus 364 ~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred cCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 211111111 1111 126778999999874 6678877654221111 1111222221 22777888888554
Q ss_pred ---cEEEEECCCCceeEE--EeCCCCCeEEEEEeeCCCeEEEEEECCCE-----EEEEECCCC--eEEEEecCCCCcEEE
Q 008050 476 ---TCRIWDLRKRKSLYV--IPAHSNLISQVKFEPQEGYFLVTGSYDMT-----VKVWSGRDF--KLVKSLSGHEAKVTS 543 (579)
Q Consensus 476 ---~I~iwDl~~~~~~~~--~~~~~~~V~~v~~sp~~~~~l~sgs~dg~-----I~iwd~~~~--~~~~~l~~h~~~V~~ 543 (579)
++..||..+++-... +....... .++.. ++.+++.||.|+. |..||..+. ..+..+....+.+-.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccc-eEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 467888776543322 21111111 23333 4788888888763 777887654 444334333333333
Q ss_pred EEEcCCCCEEEEEEcCC-----eEEEEEcCCC
Q 008050 544 LDIHPDEQSIATVSHDR-----WIKLWSTRNK 570 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg-----~I~iW~~~~~ 570 (579)
+.+ ++...++||.|| +|..||..+.
T Consensus 519 ~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 519 VVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 333 466778888886 4666665543
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.21 E-value=0.25 Score=48.29 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=116.2
Q ss_pred CeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCee-EEEeccc-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE
Q 008050 330 RATDVTFSPVSNHVATSSADR--TARLWNTDGSLL-NTFQGHL-DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL 405 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg--~I~iwd~~~~~~-~~~~~h~-~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~ 405 (579)
-...+.|..++.++-+.+.-| .|+.+|..+..+ ....-.. .---.++.. +++.....-.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence 356788877788888887766 788888665433 3322111 111234444 34455556678999999999988887
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGH-----VKPVLGISFSPNGYHLATGGEDNTCRIW 480 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-----~~~I~si~~sp~g~~l~tgs~Dg~I~iw 480 (579)
.+.- .+.-+.++ .|+..|+.+.....|+++|..+.+....+... ...++-+.|- +|...+=.-....|...
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 7643 35666777 45667777777889999999888776665432 2235566775 66555555567789999
Q ss_pred ECCCCceeEEEeC---------------CCCCeEEEEEeeCCCeEEEEEE
Q 008050 481 DLRKRKSLYVIPA---------------HSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 481 Dl~~~~~~~~~~~---------------~~~~V~~v~~sp~~~~~l~sgs 515 (579)
|..+|+.+..+.. .....+.|+|++..+.+++||-
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 9999998877632 1346899999998888888873
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0066 Score=63.27 Aligned_cols=142 Identities=16% Similarity=0.157 Sum_probs=99.7
Q ss_pred CCCEE-EEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC-------EEEEEeCCCcEEEEe--CCCC-eeEEE
Q 008050 297 DGNLL-ATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN-------HVATSSADRTARLWN--TDGS-LLNTF 365 (579)
Q Consensus 297 dg~~l-atgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-------~l~s~s~dg~I~iwd--~~~~-~~~~~ 365 (579)
+.++| .++.....++-.|++.|+.+..++.|.. |.-+.+.|+.+ .-+.|-.|..|.-|| +.+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 34444 3455566788889999999999998776 78888888653 235577788999999 4444 33333
Q ss_pred eccc----CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 366 QGHL----DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 366 ~~h~----~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
++|. ....|++-..+| ++++|+.+|.|++||--...-...+.+....|..+..+.+|.+|++.+ +.++.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 3332 344555555455 899999999999999733333445567788999999999999887655 6666666653
No 397
>PRK10115 protease 2; Provisional
Probab=97.16 E-value=0.7 Score=52.46 Aligned_cols=236 Identities=8% Similarity=-0.007 Sum_probs=124.6
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCe-e-EEEecccCCeEEEEEecCCCEEEEEeCC------CeEEE
Q 008050 329 ERATDVTFSPVSNHVATSSAD-----RTARLWNTDGSL-L-NTFQGHLDRLARMAFHPSGKYLGTTSFD------KTWRL 395 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~d-----g~I~iwd~~~~~-~-~~~~~h~~~I~~l~~sp~~~~l~s~s~d------g~I~l 395 (579)
-.+..+.|+|++++|+.+... ..|++.|+.+.. + ..+.+. . ..++|.++++.|+.+..+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778999999988776443 257778865432 2 122211 1 459999999877665542 36888
Q ss_pred EECCCC--cEEEEEecCCCCeE-EEEEcCCCCEEEEEeC---CCeEEEEeCC--CCeEEEEEecCCCCeEEEEEcCCCCE
Q 008050 396 WDVDTG--VELLLQEGHSRSVY-GIAFHPDGSLAASCGL---DALARVWDLR--TGRSILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 396 wd~~~~--~~~~~~~~~~~~V~-~l~~spdg~~l~sg~~---dg~I~iwd~~--~~~~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +.. ..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CE
Confidence 999888 44444443333333 3334447776655443 4578888843 3432222222222223332 222 33
Q ss_pred EEEEeCC----CcEEEEECCCCceeEEEeCC-C-CCeEEEEEeeCCCeEEEEEECCCEEEEEECCC-CeEEEEec-CCCC
Q 008050 468 LATGGED----NTCRIWDLRKRKSLYVIPAH-S-NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD-FKLVKSLS-GHEA 539 (579)
Q Consensus 468 l~tgs~D----g~I~iwDl~~~~~~~~~~~~-~-~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~-~~~~~~l~-~h~~ 539 (579)
|+.-+.. ..|...++........+..+ . ..+..+.+. ++.++++...+|.-+++-+.. +..+..+. ....
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 359 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPA 359 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCc
Confidence 3333322 23444455421222333333 2 367778877 467777777788766654432 22334433 2222
Q ss_pred cEEEEEEc--CCCC-EEEEEEc---CCeEEEEEcCCCC
Q 008050 540 KVTSLDIH--PDEQ-SIATVSH---DRWIKLWSTRNKG 571 (579)
Q Consensus 540 ~V~~l~~s--~dg~-~L~s~s~---Dg~I~iW~~~~~~ 571 (579)
.+..+.++ +++. ++++.++ -+.+..||+.++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 33334444 3333 4444432 3678888877643
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.12 E-value=0.0017 Score=41.90 Aligned_cols=38 Identities=42% Similarity=0.703 Sum_probs=33.7
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
+....+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778999999999999999999999999999996
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.16 Score=49.85 Aligned_cols=198 Identities=12% Similarity=0.102 Sum_probs=129.2
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH-SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR 444 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~ 444 (579)
.+....+.++.|+|+.+.|++..+...-.+|=...|+.+....-. -...-.|.+..+|+++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445556999999999999999988888888877788877765321 2334567888888888887788888888776553
Q ss_pred EEEEE----------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE---EEeCC-------CCCeEEEEEe
Q 008050 445 SILAL----------EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY---VIPAH-------SNLISQVKFE 504 (579)
Q Consensus 445 ~~~~~----------~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~---~~~~~-------~~~V~~v~~s 504 (579)
.+..+ ...+...-.++|++....|+.+-+-+-+.||.......-. ....+ -..|+++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22221 1125567889999998888888877777777655332111 11111 2347788899
Q ss_pred eCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC------C---cEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 505 PQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE------A---KVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 505 p~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~------~---~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
+..+.+|+-+..++.+.-.|.. |..+..+.-+. . ..-.++...+|. |+..|.-+..+.+
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F 309 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF 309 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence 8888899998889988888864 44344432211 1 124566666554 4444444434433
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=97.06 E-value=0.48 Score=48.76 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=133.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCeeEEEEe----CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP-RLQKFSALK----GHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~-~~~~~~~l~----~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
-...+.+++|....+-+++|. +|.| |... .++.-.... .....+.++.|..+ ..+++ +..|.|..-.-.+
T Consensus 44 ~~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S~DgG 118 (334)
T PRK13684 44 TEANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHTTDGG 118 (334)
T ss_pred CCCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEECCCC
Confidence 356788999986667677775 4533 3332 222222211 12234778888643 33443 4455443332222
Q ss_pred CeeEEEe---cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 360 SLLNTFQ---GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 360 ~~~~~~~---~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
+.-..+. ...+....+.....+. +..++..|.|..= .+.|+.-.. .......++++.+.+++.+++++ ..|.+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i 195 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGT-AEMATNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNF 195 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCc-ceeeeccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceE
Confidence 2222211 0111112222222222 2333444444322 122222221 22334578899999988666555 45554
Q ss_pred EE-EeCCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC----CCCeEEEEEeeCCCe
Q 008050 436 RV-WDLRTGRSILAL-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH----SNLISQVKFEPQEGY 509 (579)
Q Consensus 436 ~i-wd~~~~~~~~~~-~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~----~~~V~~v~~sp~~~~ 509 (579)
.. +| ..++..... ......++++.+.+++..+++| ..|.+.+=....+..-.....+ ...+..+.+.++ +.
T Consensus 196 ~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~-~~ 272 (334)
T PRK13684 196 YSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP-GE 272 (334)
T ss_pred EEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCC-CC
Confidence 43 22 222222222 2334568999999999877765 4576643233344332222211 234677888875 55
Q ss_pred EEEEEECCCEEEEEECCCCeEEEEe---cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 510 FLVTGSYDMTVKVWSGRDFKLVKSL---SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
+++ ++.+|.|. .....++.-... ..-....+.+.|..+++.++ .+..|.|--|+-
T Consensus 273 ~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 273 IWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred EEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 544 45577555 344433332222 22234577888876666555 556888877763
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.02 E-value=0.24 Score=56.31 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=119.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC--------eEEEEEcc----------------CCCEEEEEeCCCcEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTER--------ATDVTFSP----------------VSNHVATSSADRTAR 353 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~sp----------------~~~~l~s~s~dg~I~ 353 (579)
+..|++++.++.|.-.|..+++.+..+...... +..+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 667788888999999999999998887643211 12233321 234788899999999
Q ss_pred EEeC-CCCeeEEEecccCCeE-------------EEEEec--CCCEEEEEeC----------CCeEEEEECCCCcEEEEE
Q 008050 354 LWNT-DGSLLNTFQGHLDRLA-------------RMAFHP--SGKYLGTTSF----------DKTWRLWDVDTGVELLLQ 407 (579)
Q Consensus 354 iwd~-~~~~~~~~~~h~~~I~-------------~l~~sp--~~~~l~s~s~----------dg~I~lwd~~~~~~~~~~ 407 (579)
-.|. +|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 8884 5666655432 11110 011111 1345666643 688999999999988765
Q ss_pred ecC---------CCC--------e-EEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCeEEEEEec
Q 008050 408 EGH---------SRS--------V-YGIAFHPDGSLAASCG------------------LDALARVWDLRTGRSILALEG 451 (579)
Q Consensus 408 ~~~---------~~~--------V-~~l~~spdg~~l~sg~------------------~dg~I~iwd~~~~~~~~~~~~ 451 (579)
..- .+. + ..+++.+...+++.+. ..+.|.-.|.++|+....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 011 1 1234455444444322 235677788999998887765
Q ss_pred CCCCeE---------EEEEcC-CCC---EEEEEeCCCcEEEEECCCCceeEEE
Q 008050 452 HVKPVL---------GISFSP-NGY---HLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 452 ~~~~I~---------si~~sp-~g~---~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
....+. -+.+.. +|+ .++.++.+|.++++|-++++.+..+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 222111 122322 553 7889999999999999999887654
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.01 E-value=0.6 Score=49.16 Aligned_cols=265 Identities=12% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCCEEEEEecCCeEEEEeCCCCe-----eEEEEeCCCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEeC---CCC---
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQ-----KFSALKGHTERATDVTFSP-----VSNHVATSSADRTARLWNT---DGS--- 360 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~l~~sp-----~~~~l~s~s~dg~I~iwd~---~~~--- 360 (579)
+...|++|+..|.++||+-.... .+-. ..-..+|..+..-. ....|++ -.-..+.+|.+ .+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34699999999999999975432 1111 22456788777643 1223443 45567788874 221
Q ss_pred ----eeEEEecccC--CeEEEEEec----C-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 008050 361 ----LLNTFQGHLD--RLARMAFHP----S-GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC 429 (579)
Q Consensus 361 ----~~~~~~~h~~--~I~~l~~sp----~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg 429 (579)
.+..+..|.- ....+++-+ . ..++.+-+.||.+.+|+-+.......+.+ .--...+.|.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 2223333332 223344433 2 35888999999999999776544333332 2223346788877789999
Q ss_pred eCCCeEEEEeCCC--------------------CeE---EEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 008050 430 GLDALARVWDLRT--------------------GRS---ILALEGHVK--PVLGISFSPNGYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 430 ~~dg~I~iwd~~~--------------------~~~---~~~~~~~~~--~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~ 484 (579)
+.+..+..|.... ++. -.++..... .|..+.++.+...+++-+ ...+.+.+. +
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~ 270 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-N 270 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-C
Confidence 8888888886521 110 111111111 123333333333444444 345777765 4
Q ss_pred CceeEEEeCCCCCeEEEEEee------CCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEE---EcCCCCEEEE
Q 008050 485 RKSLYVIPAHSNLISQVKFEP------QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLD---IHPDEQSIAT 555 (579)
Q Consensus 485 ~~~~~~~~~~~~~V~~v~~sp------~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~---~s~dg~~L~s 555 (579)
|......+..-.+.....|.. ..+..++.++.++.+.||. +.+++..-.....+| ++. |..-...|++
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVS 347 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCceEEE
Confidence 554444443222222222221 2223578889999999996 344444444333333 333 3333457888
Q ss_pred EEcCCeEEEEEcCC
Q 008050 556 VSHDRWIKLWSTRN 569 (579)
Q Consensus 556 ~s~Dg~I~iW~~~~ 569 (579)
-+.+|.|.+--+-+
T Consensus 348 Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 348 LSDEGQLSVSYLGT 361 (418)
T ss_pred EcCCCcEEEEEeCC
Confidence 88899988876644
No 403
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.95 E-value=0.62 Score=48.68 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=83.4
Q ss_pred CCeEEEEEccCCCEEEEEe-----------CCC-cEEEEe-CC--CC--eeEEEecccCCeEEEEEecCCCEEEEEeCCC
Q 008050 329 ERATDVTFSPVSNHVATSS-----------ADR-TARLWN-TD--GS--LLNTFQGHLDRLARMAFHPSGKYLGTTSFDK 391 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s-----------~dg-~I~iwd-~~--~~--~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg 391 (579)
.....|+|.++|+++++-. ..+ .|.+++ .+ ++ ....+.........+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3567889999988777653 223 677776 32 32 234444444566889999888 55555554
Q ss_pred eEEEEECCCC-----cEEEEEe---c----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEeC
Q 008050 392 TWRLWDVDTG-----VELLLQE---G----HSRSVYGIAFHPDGSLAASCGLD-------------------ALARVWDL 440 (579)
Q Consensus 392 ~I~lwd~~~~-----~~~~~~~---~----~~~~V~~l~~spdg~~l~sg~~d-------------------g~I~iwd~ 440 (579)
.+++.|.... +...... . +......+.|.|||.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4445455321 2211211 1 12346789999999877655521 45666666
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 441 RTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~ 473 (579)
.+++......+ ......++|+++|.++++-..
T Consensus 172 dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCeEEEEecC-cCCCccceECCCCCEEEEccC
Confidence 55543322233 344678999999988776443
No 404
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.013 Score=66.04 Aligned_cols=100 Identities=22% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEE
Q 008050 381 GKYLGTTSFDKTWRLWDVDTGVEL-LLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGI 459 (579)
Q Consensus 381 ~~~l~s~s~dg~I~lwd~~~~~~~-~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si 459 (579)
+..++.|+..|.+...|+...-.. ..-....++|++++|+.+|.+++.|-.+|.|.+||+..++.+..+..|..+.+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 456788888888888887654221 1222345789999999999999999999999999999999998888777665554
Q ss_pred ---EEcCCCCEEEEEeCCCcEEEEEC
Q 008050 460 ---SFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 460 ---~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
.+..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 34445567788777775 5654
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0012 Score=61.93 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=65.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE-EEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCe
Q 008050 380 SGKYLGTTSFDKTWRLWDVDTGVELL-LQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV-KPV 456 (579)
Q Consensus 380 ~~~~l~s~s~dg~I~lwd~~~~~~~~-~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~I 456 (579)
-+..+++|+.+|.|++|+........ ... +.....+.|.-..++.+.++++.+|.|+.|++.-++.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 35678999999999999886221111 111 112222233334466789999999999999998888777666666 444
Q ss_pred EEEEEcCCCCEEEEE--eCCCcEEEEECC
Q 008050 457 LGISFSPNGYHLATG--GEDNTCRIWDLR 483 (579)
Q Consensus 457 ~si~~sp~g~~l~tg--s~Dg~I~iwDl~ 483 (579)
..+..+..+..|... |.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 444444445555555 555556666554
No 406
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.88 E-value=0.0021 Score=69.37 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=5.8
Q ss_pred CCEEEEEecCCe
Q 008050 298 GNLLATSSLSGV 309 (579)
Q Consensus 298 g~~latgs~dg~ 309 (579)
|+|+-+|+.+..
T Consensus 828 GNyMn~gSrNa~ 839 (1102)
T KOG1924|consen 828 GNYMNSGSRNAQ 839 (1102)
T ss_pred hcccccccccch
Confidence 455555554433
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.82 E-value=0.44 Score=50.08 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=56.7
Q ss_pred CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCc-EEEEEEcCC-----------------CCE-EEEE
Q 008050 496 NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAK-VTSLDIHPD-----------------EQS-IATV 556 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d-----------------g~~-L~s~ 556 (579)
..+.+++.+|. +.+.++...=|.|.++|+.++..++.++|-.+. +.-+..... ..+ ++-+
T Consensus 308 R~~~~i~~sP~-~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPS-GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCC-CCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 44778899996 788888888899999999998888777764332 111111111 112 3445
Q ss_pred EcCCeEEEEEcCCCCccccccC
Q 008050 557 SHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 557 s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
-.-|.|-||.++++..+..+++
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5689999999999988877654
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.39 Score=46.86 Aligned_cols=229 Identities=16% Similarity=0.150 Sum_probs=135.7
Q ss_pred EEEEcCCC-CEEEEEecCCe-EEEEeCCCCeeEEEEeCCCCC--eEEEEEccCCCEEEEEeCC-----CcEEEEeCCC--
Q 008050 291 GCSYSHDG-NLLATSSLSGV-VKIWSMPRLQKFSALKGHTER--ATDVTFSPVSNHVATSSAD-----RTARLWNTDG-- 359 (579)
Q Consensus 291 ~~~~spdg-~~latgs~dg~-I~iwd~~~~~~~~~l~~h~~~--V~~l~~sp~~~~l~s~s~d-----g~I~iwd~~~-- 359 (579)
.++|+|.. .-++.+-.-|+ ..++|.+..+...++...++. -..=.||++|.+|+..-.| |.|-|||...
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 35677654 34555555554 567888877766655432221 2234699999999876544 7899999654
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeC------------------CCeEEEEECCCCcEEEEEe----cCCCCeEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSF------------------DKTWRLWDVDTGVELLLQE----GHSRSVYGI 417 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~------------------dg~I~lwd~~~~~~~~~~~----~~~~~V~~l 417 (579)
..+..+..|.-.-..+.|.+||+.++.+.. .-++.+.|..+|..+.... .+.-+|..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 345566777777788999999998887643 1134455545554443221 234567888
Q ss_pred EEcCCCCEEEEEeCCCe-----EEEEeCCCCeEEEEEec-------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 008050 418 AFHPDGSLAASCGLDAL-----ARVWDLRTGRSILALEG-------HVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRK 484 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg~-----I~iwd~~~~~~~~~~~~-------~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~ 484 (579)
+..+||..++.+-..|- -.+=-.+.++.+..+.. ...-|-+|+.+.+..+++..+ ..+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 88888876665543331 11111123333333221 123467788877555555555 556778999999
Q ss_pred CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 485 ~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
+..+..-... ....+.-.. +- ++..+.+|.+.++.
T Consensus 312 G~vv~~a~l~--daaGva~~~--~g-f~vssg~G~~~~~s 346 (366)
T COG3490 312 GAVVSEAALP--DAAGVAAAK--GG-FAVSSGQGRIIFYS 346 (366)
T ss_pred CcEEeccccc--ccccceecc--Cc-eEEecCCceEEecc
Confidence 9877654321 122333332 33 44456688888774
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.77 E-value=0.052 Score=59.82 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=89.6
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCeEEE
Q 008050 380 SGKYLGTTSFDK------TWRLWDVDTGVELLLQEGH-SRSVYGIAFHPDGSLAASCGLD-----ALARVWDLRTGRSIL 447 (579)
Q Consensus 380 ~~~~l~s~s~dg------~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spdg~~l~sg~~d-----g~I~iwd~~~~~~~~ 447 (579)
++..++.|+.++ .+..||..++......... ...-.+++ .-++.+++.||.+ ..+..||..+++-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 455556665432 5778888776553322111 11111222 2256788888865 346778887654321
Q ss_pred E--EecCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--EeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 448 A--LEGHVKPVLGISFSPNGYHLATGGED------NTCRIWDLRKRKSLYV--IPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 448 ~--~~~~~~~I~si~~sp~g~~l~tgs~D------g~I~iwDl~~~~~~~~--~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
. +...... .+++ .-+++.++.|+.+ +.+..||..+++-... +...... .++... ++.+++.|+.+
T Consensus 373 ~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~ 447 (534)
T PHA03098 373 EPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGIS 447 (534)
T ss_pred CCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCcc
Confidence 1 1111111 1122 2256667777632 3578899876543221 1111111 122222 36666767643
Q ss_pred --------CEEEEEECCCCeE--EEEecCCCCcEEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008050 518 --------MTVKVWSGRDFKL--VKSLSGHEAKVTSLDIHPDEQSIATVSHD-----RWIKLWSTRNK 570 (579)
Q Consensus 518 --------g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~I~iW~~~~~ 570 (579)
..+.+||..+.+. +..+.........+.+ +++.++.||.+ +.|.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899776543 3222211111122222 56777777754 46788887654
No 410
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.74 E-value=0.69 Score=45.78 Aligned_cols=215 Identities=15% Similarity=0.169 Sum_probs=125.4
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCC-------CCeeEEEEeC-----CCCCeEEEEEccCCC------------EEE
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMP-------RLQKFSALKG-----HTERATDVTFSPVSN------------HVA 344 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~-------~~~~~~~l~~-----h~~~V~~l~~sp~~~------------~l~ 344 (579)
-..++|+|.+.+.++....+...+||.. ....+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3578999999888888888999999986 1223334332 234678888875433 367
Q ss_pred EEeCCCcEEEEeC--CCC----eeEEEec-ccCC-eEEEEEecC--CCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCC
Q 008050 345 TSSADRTARLWNT--DGS----LLNTFQG-HLDR-LARMAFHPS--GKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRS 413 (579)
Q Consensus 345 s~s~dg~I~iwd~--~~~----~~~~~~~-h~~~-I~~l~~sp~--~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~ 413 (579)
.++.||+|.-|.. +.. ....+.. ..+. -..+++... +.+|+.+. ..++|.+||-.-..... ......+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~-~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL-PGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC-CCCccCC
Confidence 7899999999983 222 1122221 1122 334555543 55666655 46889999864332111 0000000
Q ss_pred -------------------eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcC------CCC
Q 008050 414 -------------------VYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE--GHVKPVLGISFSP------NGY 466 (579)
Q Consensus 414 -------------------V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp------~g~ 466 (579)
|+-..-.+++..=+.|---|.|-+||+ .|+.++.+. +.-..-..|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 111111112222222334578999997 466666663 2334456677655 466
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeCCCC------CeEEEEEee
Q 008050 467 HLATGGEDNTCRIWDLRKRKSLYVIPAHSN------LISQVKFEP 505 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~------~V~~v~~sp 505 (579)
+|+---.||+|..||..+++.+..+....+ .+..+.|-.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 777667899999999999988877765433 245555543
No 411
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.74 E-value=0.88 Score=46.93 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=118.9
Q ss_pred eCCCCeeEEEEeCCCCCeEEE-----EEccCCCEEEEEeC-CC--cEEEEeCCCCeeEEEecccC-CeEEEEEecCCCEE
Q 008050 314 SMPRLQKFSALKGHTERATDV-----TFSPVSNHVATSSA-DR--TARLWNTDGSLLNTFQGHLD-RLARMAFHPSGKYL 384 (579)
Q Consensus 314 d~~~~~~~~~l~~h~~~V~~l-----~~sp~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~~h~~-~I~~l~~sp~~~~l 384 (579)
|-.+|..+..+.........+ +|..+|+.|+.++. || .+.+.|+.+..+..+....+ ......++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 556777777776544433333 56678876655544 55 55666688877777766542 23356778888888
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEE--cCCCCEEEEEeC----------------------CCeEEEEeC
Q 008050 385 GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF--HPDGSLAASCGL----------------------DALARVWDL 440 (579)
Q Consensus 385 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~--spdg~~l~sg~~----------------------dg~I~iwd~ 440 (579)
+-...+..|+-.|+.+.+...++......+-...| +.|+..++..-. .+.|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 77767789999999999887777666655544555 345666543311 234666788
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeC---CC-cEEEEECCC-CceeEEEeCCC--CCeEEEEEeeCCCeEEE
Q 008050 441 RTGRSILALEGHVKPVLGISFSPNG-YHLATGGE---DN-TCRIWDLRK-RKSLYVIPAHS--NLISQVKFEPQEGYFLV 512 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~---Dg-~I~iwDl~~-~~~~~~~~~~~--~~V~~v~~sp~~~~~l~ 512 (579)
.+|+....+. ....+..+.|+|.. ..|+.|.+ +. .-+||-+++ +.....+..+. ..+..=-|.+++..+..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8887655555 34457889999954 45555442 22 135565443 33333333332 22344457887555544
Q ss_pred EEE----CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC
Q 008050 513 TGS----YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 513 sgs----~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
.+. .+..|.-+|..+++...... ......+-.++||++++-=|.|
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 333 23457777888775433222 1235566678899877654444
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.64 E-value=0.9 Score=45.77 Aligned_cols=226 Identities=13% Similarity=0.136 Sum_probs=110.9
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe---CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee-EE
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK---GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL-NT 364 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~-~~ 364 (579)
..++.|..+ ..+++| ..| +.+...+.++.-..+. .-.+....+....++. ...++..|.|+.-.-.++.- ..
T Consensus 64 l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~DgG~tW~~~ 139 (302)
T PF14870_consen 64 LNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTTDGGKTWQAV 139 (302)
T ss_dssp EEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEESSTTSSEEEE
T ss_pred EEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeCCCCCCeeEc
Confidence 556677543 344444 445 3344444555444432 1223344444444443 33344556554443333332 22
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL-RTG 443 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~-~~~ 443 (579)
.....+.+..+..+++|+++++++....+.-||--...-..........|..|.|.+++.+.+++ ..|.|+.=+. ...
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34455778888899999999888777777788865443344444556889999999998776654 8888888772 222
Q ss_pred eEEEE----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC---CCCCeEEEEEeeCCCeEEEEEEC
Q 008050 444 RSILA----LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA---HSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 444 ~~~~~----~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~---~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
..... .....-.+..++|.+++...++|+ .|.+ +.....|+.-..... -...++.|.|... ..-++ -+.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~-~~gf~-lG~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP-DKGFV-LGQ 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET-TEEEE-E-S
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCC-CceEE-ECC
Confidence 22111 111223478999998877666555 5544 344455655544432 2345778888764 34444 366
Q ss_pred CCEEEEE
Q 008050 517 DMTVKVW 523 (579)
Q Consensus 517 dg~I~iw 523 (579)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877655
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.63 E-value=0.64 Score=45.78 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=90.9
Q ss_pred CeEEEEEccCCCEEEEEe---CCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE-CCCCcEEE
Q 008050 330 RATDVTFSPVSNHVATSS---ADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD-VDTGVELL 405 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s---~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd-~~~~~~~~ 405 (579)
.+.+.++++++..++... ....++++...+.....+.+ ..+..-.|++++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999877665 33456666655544443332 3678889999987766666666666663 33333222
Q ss_pred --EEecCC-CCeEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CC------eEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 406 --LQEGHS-RSVYGIAFHPDGSLAASCG---LDALARVWDLR---TG------RSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 406 --~~~~~~-~~V~~l~~spdg~~l~sg~---~dg~I~iwd~~---~~------~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
.-.... ..|..+.++|||..++... .++.|.+--+. .+ ............+..+.|..++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 211111 2899999999999776554 35677766443 22 111122233457899999999987777
Q ss_pred EeCCC
Q 008050 471 GGEDN 475 (579)
Q Consensus 471 gs~Dg 475 (579)
+...+
T Consensus 183 ~~~~~ 187 (253)
T PF10647_consen 183 GRSAG 187 (253)
T ss_pred eCCCC
Confidence 66443
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=1.2 Score=46.51 Aligned_cols=219 Identities=15% Similarity=0.133 Sum_probs=106.7
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC-----CeeEEEec---cc----CCeEEEEEecCCCEEEEEeC------CCeEEEEECC
Q 008050 339 VSNHVATSS-ADRTARLWNTDG-----SLLNTFQG---HL----DRLARMAFHPSGKYLGTTSF------DKTWRLWDVD 399 (579)
Q Consensus 339 ~~~~l~s~s-~dg~I~iwd~~~-----~~~~~~~~---h~----~~I~~l~~sp~~~~l~s~s~------dg~I~lwd~~ 399 (579)
..++|+..+ ..+.|+|.|+.. +..+.+.. +. ..-..+-.-|+|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 578999999653 23333332 11 22234455678888887532 2578888988
Q ss_pred CCcEEEEEecC---CCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEeCCCCeEEEEEecCCC--
Q 008050 400 TGVELLLQEGH---SRSVYGIAFHPDGSLAASCGL--------------------DALARVWDLRTGRSILALEGHVK-- 454 (579)
Q Consensus 400 ~~~~~~~~~~~---~~~V~~l~~spdg~~l~sg~~--------------------dg~I~iwd~~~~~~~~~~~~~~~-- 454 (579)
+.+........ ...-+.+-|+|..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77766655432 234567889998888888642 35899999999999999875432
Q ss_pred CeEEEEEcCC--CCEEEEEe-CCCcEEEEEC-CCCc----eeEEEeCC-----------------CCCeEEEEEeeCCCe
Q 008050 455 PVLGISFSPN--GYHLATGG-EDNTCRIWDL-RKRK----SLYVIPAH-----------------SNLISQVKFEPQEGY 509 (579)
Q Consensus 455 ~I~si~~sp~--g~~l~tgs-~Dg~I~iwDl-~~~~----~~~~~~~~-----------------~~~V~~v~~sp~~~~ 509 (579)
....|.|..+ ..+=++|+ -.++|..|-- ..+. .+..+... ...|+.|.+|.+...
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556666553 44433333 4445555532 3332 22222211 245799999998555
Q ss_pred EEEEEECCCEEEEEECCCC---eEEEEec-C---------------CCCcEEEEEEcCCCCEEEEEE
Q 008050 510 FLVTGSYDMTVKVWSGRDF---KLVKSLS-G---------------HEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~---~~~~~l~-~---------------h~~~V~~l~~s~dg~~L~s~s 557 (579)
+.+++-.+|.|+.||+.+- +++.++. + -.+...-+..|-||+.|+..+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 5566666999999998753 4444432 1 012235677888999887654
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.57 E-value=0.41 Score=49.82 Aligned_cols=192 Identities=15% Similarity=0.089 Sum_probs=97.2
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----cEEEEEec---C----CCCeEEEEEcCCCCEEEEEe------CCCeEEEEeCC
Q 008050 380 SGKYLGTTS-FDKTWRLWDVDTG----VELLLQEG---H----SRSVYGIAFHPDGSLAASCG------LDALARVWDLR 441 (579)
Q Consensus 380 ~~~~l~s~s-~dg~I~lwd~~~~----~~~~~~~~---~----~~~V~~l~~spdg~~l~sg~------~dg~I~iwd~~ 441 (579)
..++|+..+ ..+.|+++|+.+. +...+++. + -..-..+..-|+|.+++++- .-|-+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 6788999999743 33333321 1 12233455567888887752 23568888888
Q ss_pred CCeEEEEEecCC---CCeEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCceeEEEeCCCC--
Q 008050 442 TGRSILALEGHV---KPVLGISFSPNGYHLATGG--------------------EDNTCRIWDLRKRKSLYVIPAHSN-- 496 (579)
Q Consensus 442 ~~~~~~~~~~~~---~~I~si~~sp~g~~l~tgs--------------------~Dg~I~iwDl~~~~~~~~~~~~~~-- 496 (579)
+.+....+.... .--+.+-|.|..+.++++. ...++.+||+.+.+.++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777777665432 2345677788777888763 235799999999999999987542
Q ss_pred CeEEEEEeeC--CCeEEEEEECCCEEEEEEC-CCCe----EEEEecCC-----------------CCcEEEEEEcCCCCE
Q 008050 497 LISQVKFEPQ--EGYFLVTGSYDMTVKVWSG-RDFK----LVKSLSGH-----------------EAKVTSLDIHPDEQS 552 (579)
Q Consensus 497 ~V~~v~~sp~--~~~~l~sgs~dg~I~iwd~-~~~~----~~~~l~~h-----------------~~~V~~l~~s~dg~~ 552 (579)
....+.|..+ ...-++.+.-.++|..|-- ..++ .+..+... ..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777543 3333444444555655532 3332 22222210 234799999999999
Q ss_pred EEEEE-cCCeEEEEEcCCCC
Q 008050 553 IATVS-HDRWIKLWSTRNKG 571 (579)
Q Consensus 553 L~s~s-~Dg~I~iW~~~~~~ 571 (579)
|+.++ .+|.|+.||+....
T Consensus 326 LYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTT
T ss_pred EEEEcccCCcEEEEecCCCC
Confidence 98777 57999999998643
No 416
>PHA03098 kelch-like protein; Provisional
Probab=96.54 E-value=0.14 Score=56.43 Aligned_cols=185 Identities=10% Similarity=-0.017 Sum_probs=89.7
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeeEEEeccc-CCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEEEE
Q 008050 339 VSNHVATSSADR------TARLWNTDGSLLNTFQGHL-DRLARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGVELLL 406 (579)
Q Consensus 339 ~~~~l~s~s~dg------~I~iwd~~~~~~~~~~~h~-~~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~~~~~ 406 (579)
++..++.||.++ .+..||........+.... .+.......-++..++.|+.+ ..+..||..+++....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 456667776543 4667775554433332211 111111112256677777765 3577888877654332
Q ss_pred Eec-CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCC---
Q 008050 407 QEG-HSRSVYGIAFHPDGSLAASCGLD------ALARVWDLRTGRSILAL--EGHVKPVLGISFSPNGYHLATGGED--- 474 (579)
Q Consensus 407 ~~~-~~~~V~~l~~spdg~~l~sg~~d------g~I~iwd~~~~~~~~~~--~~~~~~I~si~~sp~g~~l~tgs~D--- 474 (579)
... +...-.+++. -++.+++.||.+ ..+..||..+++-...- ...... .++. ..++..++.|+.+
T Consensus 374 ~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 374 PPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYID 450 (534)
T ss_pred CCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccCCC
Confidence 111 1111112222 356677777732 45788998775432211 111111 1222 2256666666643
Q ss_pred -----CcEEEEECCCCceeEE--EeCCCCCeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCe
Q 008050 475 -----NTCRIWDLRKRKSLYV--IPAHSNLISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFK 529 (579)
Q Consensus 475 -----g~I~iwDl~~~~~~~~--~~~~~~~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~ 529 (579)
..+.+||..+++-... +........ ++.. ++.+++.|+.+ +.|.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINAS-LCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcccccce-EEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899876543221 111111111 2222 36677777654 468888876644
No 417
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.46 E-value=0.69 Score=52.32 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=54.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDG--SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~ 406 (579)
-.|..|.++++|.+|+..|..|. .|-.+-. .....+.+....|.|-.+.=+..++ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~-------------------- 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-T-------------------- 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc-c--------------------
Confidence 35888999999999998888664 3333221 1112233333334333333222221 1
Q ss_pred EecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCC
Q 008050 407 QEGHSRSVYGIAFHPD---GSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 407 ~~~~~~~V~~l~~spd---g~~l~sg~~dg~I~iwd~~~~ 443 (579)
..+...|..+.|||. +..|++-+.|+++++||+...
T Consensus 143 -~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123456777888885 467888888888888888653
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.40 E-value=1.4 Score=45.23 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=116.0
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCee---EEEE----eCCCCCeEEEEEccC---CCEEEEEeC-C--------
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK---FSAL----KGHTERATDVTFSPV---SNHVATSSA-D-------- 349 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~---~~~l----~~h~~~V~~l~~sp~---~~~l~s~s~-d-------- 349 (579)
-.+|+|.|||+++++ ...|.|++++ .++.. +..+ .........++++|+ +.+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 468999999887765 5599999999 44443 2222 124457899999994 334433332 1
Q ss_pred CcEEEEeCCCC--e-------eEEEec---ccCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC---
Q 008050 350 RTARLWNTDGS--L-------LNTFQG---HLDRLARMAFHPSGKYLGTTSFD-------------KTWRLWDVDTG--- 401 (579)
Q Consensus 350 g~I~iwd~~~~--~-------~~~~~~---h~~~I~~l~~sp~~~~l~s~s~d-------------g~I~lwd~~~~--- 401 (579)
..|.-|..+.. . +..+.. ....-..|.|.|+|.++++.+.. |.|.-.+....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 23444443221 1 111121 23345679999999766655432 33444443221
Q ss_pred ----------cEEEEEecCCCCeEEEEEcCC-CCEEEEE-eCCCeEEEEeCCCC--------------------------
Q 008050 402 ----------VELLLQEGHSRSVYGIAFHPD-GSLAASC-GLDALARVWDLRTG-------------------------- 443 (579)
Q Consensus 402 ----------~~~~~~~~~~~~V~~l~~spd-g~~l~sg-~~dg~I~iwd~~~~-------------------------- 443 (579)
.....-.++. ....++|+|. |.++++= +.++.=.|.-+..|
T Consensus 162 dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0001111332 3457899998 6554432 22222122111111
Q ss_pred ---eEEEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceeE---EE-eCCCCCeEEEEEeeCCCe
Q 008050 444 ---RSILALEGHVKPVLGISFSP-------NGYHLATGGEDNTCRIWDLRKRKSLY---VI-PAHSNLISQVKFEPQEGY 509 (579)
Q Consensus 444 ---~~~~~~~~~~~~I~si~~sp-------~g~~l~tgs~Dg~I~iwDl~~~~~~~---~~-~~~~~~V~~v~~sp~~~~ 509 (579)
.++..+..| ..+..+.|.. .|.+|++....+.|....+.....+. .+ ......+..+.+.|+ |.
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~ 318 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GA 318 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC-Ce
Confidence 122333333 4567777764 45566666667788888886553322 11 223346889999997 67
Q ss_pred EEEEEECCCEEE
Q 008050 510 FLVTGSYDMTVK 521 (579)
Q Consensus 510 ~l~sgs~dg~I~ 521 (579)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 777766777664
No 419
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.37 E-value=1.6 Score=45.56 Aligned_cols=193 Identities=11% Similarity=0.003 Sum_probs=111.5
Q ss_pred CEEEEEecCCeEEEEeCCCCeeEEEEeCC--CCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEeccc-CCeEE
Q 008050 299 NLLATSSLSGVVKIWSMPRLQKFSALKGH--TERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHL-DRLAR 374 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~-~~I~~ 374 (579)
..++++..+|.|.-.|..++..+.....- ...+.+-.+..+|+ |+.++.+|.+..+|. ++..+....... ..+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 34455577888888888888866543322 12222222333555 778888898888887 677777666555 11222
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC---CCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCeEEEEE
Q 008050 375 MAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS---RSVYGIAFHPDGSLAASCGL--DALARVWDLRTGRSILAL 449 (579)
Q Consensus 375 l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~---~~V~~l~~spdg~~l~sg~~--dg~I~iwd~~~~~~~~~~ 449 (579)
-.+-.++ .++.++.++.+...|..++.......... ..+..-....++ .++.+.. ++.+.-+|..+|......
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeee
Confidence 2222233 44444478999999998888776643321 111111112233 4555554 667888888888877664
Q ss_pred ecCC----CCeEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 450 EGHV----KPVLGISFSP-----NGYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 450 ~~~~----~~I~si~~sp-----~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
+.+. ..+....... .+..++.++.++.+...|..+++.+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 3211 1110010111 1223466777888999999999999988774
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.35 E-value=1.5 Score=45.04 Aligned_cols=231 Identities=20% Similarity=0.227 Sum_probs=121.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe---eEEE----ecccCCeEEEEEecC---CCEEEEEeCC---------
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDGSL---LNTF----QGHLDRLARMAFHPS---GKYLGTTSFD--------- 390 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~---~~~~----~~h~~~I~~l~~sp~---~~~l~s~s~d--------- 390 (579)
.-+.|+|.|+|.+|++ ...|.|++++.++.. +..+ .........++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 569999999955544 2222 123456789999994 3344433331
Q ss_pred CeEEEEECCCC-------cEEEEE-ec---CCCCeEEEEEcCCCCEEEEEeCCC-------------eEEEEeCCCCe--
Q 008050 391 KTWRLWDVDTG-------VELLLQ-EG---HSRSVYGIAFHPDGSLAASCGLDA-------------LARVWDLRTGR-- 444 (579)
Q Consensus 391 g~I~lwd~~~~-------~~~~~~-~~---~~~~V~~l~~spdg~~l~sg~~dg-------------~I~iwd~~~~~-- 444 (579)
..|.-|....+ +.+... .. .......|.|.|||.++++.+..+ .|.-.+....-
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24544544433 111111 11 233456799999998777765433 33333322110
Q ss_pred ----------EEEEE-ecCCCCeEEEEEcCC-CCEEEEEe-CCCcEEEEECCCC--------------------------
Q 008050 445 ----------SILAL-EGHVKPVLGISFSPN-GYHLATGG-EDNTCRIWDLRKR-------------------------- 485 (579)
Q Consensus 445 ----------~~~~~-~~~~~~I~si~~sp~-g~~l~tgs-~Dg~I~iwDl~~~-------------------------- 485 (579)
....+ .++. ....++|+|. |.++++=. .++.=.|.-+..+
T Consensus 162 dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 00111 1222 3568999998 65554322 2222222212111
Q ss_pred ---ceeEEEeCCCCCeEEEEEeeC------CCeEEEEEECCCEEEEEECCCCeEEE---E-ecCCCCcEEEEEEcCCCCE
Q 008050 486 ---KSLYVIPAHSNLISQVKFEPQ------EGYFLVTGSYDMTVKVWSGRDFKLVK---S-LSGHEAKVTSLDIHPDEQS 552 (579)
Q Consensus 486 ---~~~~~~~~~~~~V~~v~~sp~------~~~~l~sgs~dg~I~iwd~~~~~~~~---~-l~~h~~~V~~l~~s~dg~~ 552 (579)
.++..+..| ..+..+.|... .+.+|++.-..+.|....+.....+. . +......+.++++.|||.+
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 123334434 45666776642 24567666667788888876443222 2 2334457999999999998
Q ss_pred EEEEEcCCeEE
Q 008050 553 IATVSHDRWIK 563 (579)
Q Consensus 553 L~s~s~Dg~I~ 563 (579)
.++.+.+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88888888774
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.34 E-value=0.0014 Score=71.97 Aligned_cols=186 Identities=18% Similarity=0.272 Sum_probs=98.9
Q ss_pred CcEEEEe---CCCCeeEEE-----ecccCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEE
Q 008050 350 RTARLWN---TDGSLLNTF-----QGHLDRLARMAFHP---SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIA 418 (579)
Q Consensus 350 g~I~iwd---~~~~~~~~~-----~~h~~~I~~l~~sp---~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~ 418 (579)
|.+.+|+ ++|+....+ ......+.-+.|.| +.-++..+-.++++++.++++... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 5667777 344432222 22223334444444 667888888889999888766544 33445888877777
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-----CCCceeEEEeC
Q 008050 419 FHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL-----RKRKSLYVIPA 493 (579)
Q Consensus 419 ~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl-----~~~~~~~~~~~ 493 (579)
|...|-+++.+ .+|||..|++.+.||.+++|.+ +...+++..+.
T Consensus 232 ~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 232 FFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred HHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 65544222111 5677777777777776666643 23345555555
Q ss_pred CCC-CeEEEEEeeC------CC--eEEEEEE-CCCEEEEEECCCCeEEEEe--------cCCCCcEEEEEEcC-CCCEEE
Q 008050 494 HSN-LISQVKFEPQ------EG--YFLVTGS-YDMTVKVWSGRDFKLVKSL--------SGHEAKVTSLDIHP-DEQSIA 554 (579)
Q Consensus 494 ~~~-~V~~v~~sp~------~~--~~l~sgs-~dg~I~iwd~~~~~~~~~l--------~~h~~~V~~l~~s~-dg~~L~ 554 (579)
|.+ +-.|..++.+ -+ .++++++ .+..+++|....|+|+..+ ..|.+.|+.+.... --..++
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHH
Confidence 552 2222212211 01 2344444 3567999998888876211 12333333321110 001234
Q ss_pred EEEcCCeEEEEEc
Q 008050 555 TVSHDRWIKLWST 567 (579)
Q Consensus 555 s~s~Dg~I~iW~~ 567 (579)
+.+.||.|++|.-
T Consensus 361 ~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQN 373 (1283)
T ss_pred HhhhHHHHHHhhc
Confidence 5667888888864
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.32 E-value=1.2 Score=43.73 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=89.2
Q ss_pred CeEEEEEecCCCEEEEEe---CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeEE
Q 008050 371 RLARMAFHPSGKYLGTTS---FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD-LRTGRSI 446 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s---~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd-~~~~~~~ 446 (579)
.+.+.+++++++.++... ....++++.......... ....+..-.|++++.+.+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999777665 334566665443322222 223677889999987777766666666663 3333322
Q ss_pred -EEEec--CCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC------ceeEEEeCCCCCeEEEEEeeCCCeEE
Q 008050 447 -LALEG--HVKPVLGISFSPNGYHLATGG---EDNTCRIWDLR---KR------KSLYVIPAHSNLISQVKFEPQEGYFL 511 (579)
Q Consensus 447 -~~~~~--~~~~I~si~~sp~g~~l~tgs---~Dg~I~iwDl~---~~------~~~~~~~~~~~~V~~v~~sp~~~~~l 511 (579)
..... ....|..+.+||||..++.-. .++.|.+--+. .+ ..+.........+..+.|..+ +.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~-~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD-STLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC-CEEE
Confidence 11211 112799999999999887766 35677766543 22 111222223467899999986 5555
Q ss_pred EEEEC-CCEEEE
Q 008050 512 VTGSY-DMTVKV 522 (579)
Q Consensus 512 ~sgs~-dg~I~i 522 (579)
+.+.. ++.+..
T Consensus 181 V~~~~~~~~~~~ 192 (253)
T PF10647_consen 181 VLGRSAGGPVVR 192 (253)
T ss_pred EEeCCCCCceeE
Confidence 55544 443443
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=96.26 E-value=1.7 Score=44.72 Aligned_cols=173 Identities=15% Similarity=0.091 Sum_probs=93.9
Q ss_pred EEeCCCcEEEEeCCCCeeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEE-EECCCCc-EEEEEecCCCCeEEEEEcC
Q 008050 345 TSSADRTARLWNTDGSLLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRL-WDVDTGV-ELLLQEGHSRSVYGIAFHP 421 (579)
Q Consensus 345 s~s~dg~I~iwd~~~~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~l-wd~~~~~-~~~~~~~~~~~V~~l~~sp 421 (579)
.++..|.|..-+-.++.-..+. .....+.++.+.+++.+++++ ..|.+.. +|- .++ -..........++++.+.+
T Consensus 147 ~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~ 224 (334)
T PRK13684 147 MATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP 224 (334)
T ss_pred eeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC
Confidence 3344454443332333322222 224567889999888666554 4554443 222 222 2222234456789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC---C
Q 008050 422 DGSLAASCGLDALARVWDLRTGRSILALEG----HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA---H 494 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~----~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~---~ 494 (579)
+++.++++ ..|.+.+=....|........ ....+.++.|.+++..+++ +.+|.|. .....++.-..... -
T Consensus 225 ~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~ 301 (334)
T PRK13684 225 DGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV 301 (334)
T ss_pred CCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC
Confidence 99877765 467665333444443332221 1234788999988775554 4567554 34444544443322 1
Q ss_pred CCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 495 ~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
....+.+.|..+ +..++ .+..|.|-.|+
T Consensus 302 ~~~~~~~~~~~~-~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 302 PSNFYKIVFLDP-EKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CcceEEEEEeCC-CceEE-ECCCceEEEec
Confidence 234677777753 44444 56678887775
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=96.16 E-value=0.29 Score=53.16 Aligned_cols=179 Identities=9% Similarity=-0.032 Sum_probs=87.7
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCeEEE--EEe
Q 008050 381 GKYLGTTSFD-----KTWRLWDVDTGVELLLQEGHSRS-VYGIAFHPDGSLAASCGLD--ALARVWDLRTGRSIL--ALE 450 (579)
Q Consensus 381 ~~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~~-V~~l~~spdg~~l~sg~~d--g~I~iwd~~~~~~~~--~~~ 450 (579)
+..+++|+.+ .++..||..++.......-.... -.+++ .-+|.+.+.||.+ ..+..||..+++-.. .+.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 4445555543 35677888776543322111111 11222 2367777888764 357788876553221 111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEE--EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 451 GHVKPVLGISFSPNGYHLATGGEDN---TCRIWDLRKRKSLYV--IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 451 ~~~~~I~si~~sp~g~~l~tgs~Dg---~I~iwDl~~~~~~~~--~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
........+ .-+|+..+.|+.++ .+..||.++.+-... +...... .+++. - ++.+.+.|+ .+.+||.
T Consensus 351 ~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~-~-~~~IYv~GG---~~e~ydp 422 (480)
T PHA02790 351 KPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV-F-GRRLFLVGR---NAEFYCE 422 (480)
T ss_pred CCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE-E-CCEEEEECC---ceEEecC
Confidence 111111122 22677777777543 477888766543221 1111111 12222 2 466667664 4678887
Q ss_pred CCCe--EEEEecCCCCcEEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008050 526 RDFK--LVKSLSGHEAKVTSLDIHPDEQSIATVSHD-----RWIKLWSTRNK 570 (579)
Q Consensus 526 ~~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~I~iW~~~~~ 570 (579)
.+.+ .+..+.........+.+ +|+..+.||.+ .++..||..++
T Consensus 423 ~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 6544 33333221222222222 56777777754 35778887653
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.10 E-value=1.7 Score=43.18 Aligned_cols=218 Identities=16% Similarity=0.141 Sum_probs=127.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCC-----CC---eeEEEec-----ccCCeEEEEEecCCC------------EE
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTD-----GS---LLNTFQG-----HLDRLARMAFHPSGK------------YL 384 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-----~~---~~~~~~~-----h~~~I~~l~~sp~~~------------~l 384 (579)
.-+.|+++|.+.+.++....+...+||.+ +. .+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888999999965 21 1222221 224567777775433 36
Q ss_pred EEEeCCCeEEEEECCCCcE-----EEEEe-cCCCCe-EEEEEcC--CCCEEEEE-eCCCeEEEEeCCCCeEEE--EEecC
Q 008050 385 GTTSFDKTWRLWDVDTGVE-----LLLQE-GHSRSV-YGIAFHP--DGSLAASC-GLDALARVWDLRTGRSIL--ALEGH 452 (579)
Q Consensus 385 ~s~s~dg~I~lwd~~~~~~-----~~~~~-~~~~~V-~~l~~sp--dg~~l~sg-~~dg~I~iwd~~~~~~~~--~~~~~ 452 (579)
+.++.||+|.-|...-+.. ...+. .....| ..+++.. .+.+|..+ -..++|.+||-.-.+... .|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7888999999998533322 12222 222333 3455553 24444444 467899999854332211 01100
Q ss_pred C-----CC-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC--CCCCeEEEEEee-----CCCe
Q 008050 453 V-----KP-----------VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFEP-----QEGY 509 (579)
Q Consensus 453 ~-----~~-----------I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp-----~~~~ 509 (579)
. .+ |+-..-.++++.=+.|-.-|.|-+||+ .++.++.+.. .-+.-..|+..| -++.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 00 111111222222233444578999997 5777777743 223344555544 2467
Q ss_pred EEEEEECCCEEEEEECCCCeEEEEecCCCC------cEEEEEEcC
Q 008050 510 FLVTGSYDMTVKVWSGRDFKLVKSLSGHEA------KVTSLDIHP 548 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~s~ 548 (579)
+|+---.||+|..||..+++.+..+....+ .++.|.|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 777777799999999999998888865443 357777765
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.77 Score=50.50 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=102.0
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE----ecccCCeEEEEEecCCC
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF----QGHLDRLARMAFHPSGK 382 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~----~~h~~~I~~l~~sp~~~ 382 (579)
--.|+||+. +|..+..+.-..+.+..+.|+.+. .|++...+|++++|+..|...... ......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 345778775 344444444344488899999764 566678999999999877655442 2223345555555455
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEec---CCCCeEEEEEcCCCC---EEEEEe-CCCeEEEEeCCCC-eEEEEEecCCC
Q 008050 383 YLGTTSFDKTWRLWDVDTGVELLLQEG---HSRSVYGIAFHPDGS---LAASCG-LDALARVWDLRTG-RSILALEGHVK 454 (579)
Q Consensus 383 ~l~s~s~dg~I~lwd~~~~~~~~~~~~---~~~~V~~l~~spdg~---~l~sg~-~dg~I~iwd~~~~-~~~~~~~~~~~ 454 (579)
+++-..+|.+.+-+-........... ..-.-.|....+++. .++--. ..| ..++-...+ .....+.....
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 34444455554443222111111111 111112222222211 111110 000 011111111 11122222245
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC--CCCCeEEEEEee
Q 008050 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFEP 505 (579)
Q Consensus 455 ~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp 505 (579)
.+..+.+|++.++|+--..+|.|.+-+....+.+..+.. |. .-..++|.-
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg 269 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG 269 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence 588899999999999999999999998877777766653 32 223677764
No 427
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.88 E-value=3.8 Score=45.37 Aligned_cols=237 Identities=16% Similarity=0.166 Sum_probs=123.3
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCC--CCeeEEEec-ccCCeEEEEEecCC---CEEEEEeCC-CeEEEEECCCC------
Q 008050 335 TFSPVSNHVATSSADRTARLWNTD--GSLLNTFQG-HLDRLARMAFHPSG---KYLGTTSFD-KTWRLWDVDTG------ 401 (579)
Q Consensus 335 ~~sp~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~-h~~~I~~l~~sp~~---~~l~s~s~d-g~I~lwd~~~~------ 401 (579)
.++|+.+.+-.|=....|.-|=++ .+.+..+.- ....|.|+...... .+.++|-.+ +.-++..+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 566676766665555555444432 233333322 33455666654322 244444333 33343333222
Q ss_pred --------cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEec-CCC------CeEEEEEcCC
Q 008050 402 --------VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR--SILALEG-HVK------PVLGISFSPN 464 (579)
Q Consensus 402 --------~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~-~~~------~I~si~~sp~ 464 (579)
.... . .-...|..+.|..++..+++...+|.|.+||...+. .+..+.. +.. -|........
T Consensus 114 ~~~~~e~~~~~~-~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 114 GTVNSETTNEFE-L-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred cccCccccceEE-E-EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1111 1 235678899999999999999999999999993222 1112211 111 1111111112
Q ss_pred CCEEEEEeC-C---CcEEEEECC-CCceeEEEe---CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC
Q 008050 465 GYHLATGGE-D---NTCRIWDLR-KRKSLYVIP---AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 465 g~~l~tgs~-D---g~I~iwDl~-~~~~~~~~~---~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 536 (579)
..++++-+. + -..+++.+. ....+..+. .+........|+...|.+..- .++.|.+|++...+...++.-
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 334444443 2 246677771 223333332 223333444455444654443 678999999999887776642
Q ss_pred C-----C-CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 537 H-----E-AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 537 h-----~-~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
. . ..+.++.- +..+.++.+ .++.|+++|+.-......++
T Consensus 270 ~~ii~~~~~~~vSl~~-~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 270 PSIIDKESDDLVSLKP-PSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred chhhccccccceEeec-CCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 1 1 23445532 333344433 36789999998766655554
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.56 Score=51.50 Aligned_cols=182 Identities=13% Similarity=0.069 Sum_probs=95.3
Q ss_pred CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE---EecCCCCeEEEEEcCCCCE
Q 008050 349 DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL---QEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 349 dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~---~~~~~~~V~~l~~spdg~~ 425 (579)
--.|+||+..|..+..+....+.+-.+.|+.+. .|++...+|++++|++........ +......|..+.|..+|
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 356899999998887777666688899999554 678888999999999854322211 12222345444544455
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEec---CCCCeEEEEEcCCCC---EEEEEe-CCCcEEEEECCC-CceeEEEeCCCCC
Q 008050 426 AASCGLDALARVWDLRTGRSILALEG---HVKPVLGISFSPNGY---HLATGG-EDNTCRIWDLRK-RKSLYVIPAHSNL 497 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~~~~~~~~---~~~~I~si~~sp~g~---~l~tgs-~Dg~I~iwDl~~-~~~~~~~~~~~~~ 497 (579)
+++-..+|.+.+-+-........+.. ...+-+|-...++++ .++--. ..+ ..++-... ......+....+.
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 33333345444332111111122211 111111222222211 111100 000 01111111 1112222222356
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 535 (579)
+..+.+++. ..+|+--..+|.|.+-+....+.+..+.
T Consensus 219 ~~ki~VS~n-~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPN-RRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCC-cceEEEEecCCcEEEEecchhhhhhccC
Confidence 777889985 7888888889999999887776666654
No 429
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.85 E-value=1 Score=48.77 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=79.0
Q ss_pred CCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC---CeEEEEEcCCCC
Q 008050 348 ADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR---SVYGIAFHPDGS 424 (579)
Q Consensus 348 ~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~---~V~~l~~spdg~ 424 (579)
..+...++|.+|.....+.........+...++|.+++... +.+..+|+. |+.+........ --..+.+.|+|+
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence 45678888888877666654443333367778888776655 888888885 444443332221 123567888999
Q ss_pred EEEEEeC-------------CCeEEEEeCCCCeEEEEEec--CC-------------------------CCeEEEEEcC-
Q 008050 425 LAASCGL-------------DALARVWDLRTGRSILALEG--HV-------------------------KPVLGISFSP- 463 (579)
Q Consensus 425 ~l~sg~~-------------dg~I~iwd~~~~~~~~~~~~--~~-------------------------~~I~si~~sp- 463 (579)
+|+.+.. ...|..+| .+|+.+..+.. |- --++++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 8887772 22466667 77777766531 10 1278999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 464 ~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
++.+|+++-.-..|..+|.++++....+..+
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 5555555444558999998888888777654
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.11 Score=59.01 Aligned_cols=141 Identities=15% Similarity=0.036 Sum_probs=87.7
Q ss_pred CeEEEEEecCCCEEEE--EeCCCeEEEEECCCCcEEE-----EEe------cCCCCeEEEEEcCCC-CEEEEEeCCCeEE
Q 008050 371 RLARMAFHPSGKYLGT--TSFDKTWRLWDVDTGVELL-----LQE------GHSRSVYGIAFHPDG-SLAASCGLDALAR 436 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s--~s~dg~I~lwd~~~~~~~~-----~~~------~~~~~V~~l~~spdg-~~l~sg~~dg~I~ 436 (579)
.|..+...+|+...++ .+++-.|..||+++-.... .+. .......++.|+|.- ...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555566667654443 3444579999997643221 111 112335577888843 2456677889998
Q ss_pred EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC----CCCCeEEEEEeeCCCeEEE
Q 008050 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~----~~~~V~~v~~sp~~~~~l~ 512 (579)
+..+........--......++++|+|.|+.++.|-..|++.-|-. .+.....+.. ....|.+|+|... ..+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t-~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLST-QEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecc-eeEEE
Confidence 8877543322222223455899999999999999999999998875 3443333332 2467999999864 34444
Q ss_pred E
Q 008050 513 T 513 (579)
Q Consensus 513 s 513 (579)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
No 431
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.76 E-value=0.35 Score=51.76 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=90.4
Q ss_pred CCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCeeEEEecccCCeEEEEEecCC----CEEEEEeCCCeEEEEECC---
Q 008050 329 ERATDVTFSPVSNHVATSS--ADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSG----KYLGTTSFDKTWRLWDVD--- 399 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s--~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~----~~l~s~s~dg~I~lwd~~--- 399 (579)
.+|..++|....+.+++.- .+|.+++=| ....+....|..+.|.|-+ ..|++......|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 3688899974334444432 223333222 1123444568899999853 367777788999999875
Q ss_pred --CCcEEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 400 --TGVELLLQEGHSR-----SVYGIAFHPDGSLAASCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 400 --~~~~~~~~~~~~~-----~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
+++.+..+..+-+ --..+.|||....|++-.....-.+++++... ....++ ..+-|.|.||..||..|++
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEE
Confidence 2333333322211 12356799998888877766665667766432 333343 4566999999999998877
Q ss_pred EeCC-CcEEEEEC
Q 008050 471 GGED-NTCRIWDL 482 (579)
Q Consensus 471 gs~D-g~I~iwDl 482 (579)
+-.. =.-+|||-
T Consensus 173 AvGSsLHSyiWd~ 185 (671)
T PF15390_consen 173 AVGSSLHSYIWDS 185 (671)
T ss_pred EeCCeEEEEEecC
Confidence 6543 24678874
No 432
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.62 E-value=0.034 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK 320 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~ 320 (579)
...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346999999999999999999999999998 5443
No 433
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.60 E-value=1.2 Score=47.49 Aligned_cols=269 Identities=12% Similarity=0.123 Sum_probs=137.2
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHT-ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~ 364 (579)
..+|..+.+..+| .+.+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |++.+..+.....
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 5678888888877 456677777 5566777776665544333 556666555444 466677766 6676655522221
Q ss_pred Ee--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 365 FQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH--SRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 365 ~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~--~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
.. -..+.|..+.-..+| ++..|+.+|.++.---+.+-.+.....| .+.|.++....+|+ +-+++.+|.+++-+-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc
Confidence 11 122334444433333 5677777776544333333222222222 23566666666774 555666666655432
Q ss_pred CCCeEEEEEecCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCeEEEEEEC
Q 008050 441 RTGRSILALEGHVKP-VLGISFSP--NGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~-I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
. ......+....+. +-..+..+ .+..+-....-|.+.+-+-.++..+.... .....|+.+++... + .+..|+.
T Consensus 318 ~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~-g-~lWlgs~ 394 (671)
T COG3292 318 D-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSR-G-RLWLGSM 394 (671)
T ss_pred h-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccC-C-cEEEEec
Confidence 1 1111112111111 11111111 11112222222334444444454444332 22345666777763 3 3445565
Q ss_pred CCEEEEEECCC-CeEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEE
Q 008050 517 DMTVKVWSGRD-FKLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKL 564 (579)
Q Consensus 517 dg~I~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~i 564 (579)
.+-+..|+..+ +..+....+ ..+.|..+.=.++++ |..|+.+|.++.
T Consensus 395 q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 395 QNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 54466777666 444433333 356688887788887 888888886553
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=95.57 E-value=0.58 Score=50.80 Aligned_cols=170 Identities=6% Similarity=-0.122 Sum_probs=79.2
Q ss_pred CCCEEEEEecCC-----eEEEEeCCCCeeEE--EEeCCCCCeEEEEEccCCCEEEEEeCC--CcEEEEeCCCCeeEEEec
Q 008050 297 DGNLLATSSLSG-----VVKIWSMPRLQKFS--ALKGHTERATDVTFSPVSNHVATSSAD--RTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 297 dg~~latgs~dg-----~I~iwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~ 367 (579)
++.++++|+.++ .+..||..+..-.. .+.........+. -++...+.||.+ ..+..|+...........
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 46677766543222 1111111112222 356667777754 357777754433222222
Q ss_pred ccCCe-EEEEEecCCCEEEEEeCCC---eEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 368 HLDRL-ARMAFHPSGKYLGTTSFDK---TWRLWDVDTGVELLLQEGH-SRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 368 h~~~I-~~l~~sp~~~~l~s~s~dg---~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
-.... ......-+|+..+.|+.++ .+..||..+..-...-... ...-.+++ .-+|.+.+.|+ .+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC---ceEEecCCC
Confidence 11111 1111223577777777653 4678888776543321111 11111222 23566666663 577898876
Q ss_pred CeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 443 GRSILA--LEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 443 ~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
++-... +....... +++. -+|+..++|+.+
T Consensus 425 ~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~ 456 (480)
T PHA02790 425 NTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFY 456 (480)
T ss_pred CcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcC
Confidence 543221 11111112 2222 256677777644
No 435
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.55 E-value=0.043 Score=38.49 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGSL 361 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~ 361 (579)
....|.+++|+|..++|+.++.+|.|.+|.++++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 34579999999999999999999999999987654
No 436
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.55 E-value=4.7 Score=44.64 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=126.0
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeC-CCCeeEEEEeC-CCCCeEEEEEccCC---CEEEEEeCCCc-EEEEe--CC----
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSM-PRLQKFSALKG-HTERATDVTFSPVS---NHVATSSADRT-ARLWN--TD---- 358 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~-~~~~~~~~l~~-h~~~V~~l~~sp~~---~~l~s~s~dg~-I~iwd--~~---- 358 (579)
+..++|+.+.+-.|=....|.-|=+ ++.+.+..+.- .+..|.|+...... .+.++|-.++. -++-. ..
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 3467888888877766666665554 35666666543 44556777654332 34555534432 33332 21
Q ss_pred ------CC--eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE--EE-ecCCCC-eEEEEEcC-----
Q 008050 359 ------GS--LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL--LQ-EGHSRS-VYGIAFHP----- 421 (579)
Q Consensus 359 ------~~--~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~--~~-~~~~~~-V~~l~~sp----- 421 (579)
+. ....+ .-.+.|..+.|..+++.+++...+|.|.+||...+.... .. ..+... +++ .|-+
T Consensus 112 ~~~~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~ 189 (670)
T PF10395_consen 112 EDGTVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELE 189 (670)
T ss_pred cccccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccc
Confidence 11 11122 236788999999999999999999999999993322111 11 112211 111 2222
Q ss_pred -CCCEEEEEeC-C---CeEEEEeC-CCCeEEEEEe---cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008050 422 -DGSLAASCGL-D---ALARVWDL-RTGRSILALE---GHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 422 -dg~~l~sg~~-d---g~I~iwd~-~~~~~~~~~~---~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
...++++-+. + -..+++.+ .....+..+. .+........|.- +|. |+.- .+++|.+|++...+..+++
T Consensus 190 ~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI 267 (670)
T PF10395_consen 190 NGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTI 267 (670)
T ss_pred cCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEE
Confidence 1234433333 2 24667777 1222233332 1222222233333 443 3333 6789999999888777766
Q ss_pred eCC----C--CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec
Q 008050 492 PAH----S--NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 492 ~~~----~--~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 535 (579)
... . ..+.++.- +...+.|+ +.++.|++.|+.-...+..+.
T Consensus 268 ~l~~ii~~~~~~~vSl~~-~s~nRvLL--s~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 268 SLPSIIDKESDDLVSLKP-PSPNRVLL--SVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EechhhccccccceEeec-CCCCeEEE--EcCCEEEEEeehhhhhhhhhh
Confidence 532 1 12222221 22245555 346789999987665555544
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.50 E-value=5.7 Score=45.81 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=72.2
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC----e-EEEEEecCC----------CCeEEEEEcCCCCEEEEEeCCC
Q 008050 412 RSVYGIAFHP-DGSLAASCGLDALARVWDLRTG----R-SILALEGHV----------KPVLGISFSPNGYHLATGGEDN 475 (579)
Q Consensus 412 ~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~----~-~~~~~~~~~----------~~I~si~~sp~g~~l~tgs~Dg 475 (579)
.....++|+| +...||+.+..|...|||+..+ . .+.....+. .....|.|..+...|++++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 4677899998 4568999999999999999211 1 111111111 22347889888888888765 4
Q ss_pred cEEEEECCCCceeE-EE-eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 476 TCRIWDLRKRKSLY-VI-PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 476 ~I~iwDl~~~~~~~-~~-~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
.+.++|+.+..... .+ ......|..+.-++.+..+++.-. ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 68999998776533 22 223456778887775333333222 24577777665
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.36 E-value=1 Score=47.08 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=81.6
Q ss_pred CCeeEEEEcCCCCEEEEEe-----------cCC-eEEEEeCCC--Ce--eEEEEeCCCCCeEEEEEccCCCEEEEEeCCC
Q 008050 287 RPLSGCSYSHDGNLLATSS-----------LSG-VVKIWSMPR--LQ--KFSALKGHTERATDVTFSPVSNHVATSSADR 350 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs-----------~dg-~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg 350 (579)
.....++|.++|+++++-. ..+ .|.+++-.+ +. ....+...-.....++|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4566789999999887753 223 777776432 22 223443334456889999888 44444444
Q ss_pred cEEEEeCCC------CeeE---EEec----ccCCeEEEEEecCCCEEEEEeC-------------------CCeEEEEEC
Q 008050 351 TARLWNTDG------SLLN---TFQG----HLDRLARMAFHPSGKYLGTTSF-------------------DKTWRLWDV 398 (579)
Q Consensus 351 ~I~iwd~~~------~~~~---~~~~----h~~~I~~l~~sp~~~~l~s~s~-------------------dg~I~lwd~ 398 (579)
..++.+.++ +... .+.. +......+.|.|+|.+.++.+. .|.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445433 1111 1211 1234678999999986665442 145666666
Q ss_pred CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 399 DTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430 (579)
Q Consensus 399 ~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~ 430 (579)
.++.......++ .....++|+++|.++++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 655443333333 3456889999988876543
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.21 E-value=0.46 Score=53.71 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 008050 370 DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL 449 (579)
Q Consensus 370 ~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~ 449 (579)
-.|..+.++++|.+|+..|..|-..+.=.+.......+.+....|.|-.+.-+..++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~---------------------- 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT---------------------- 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc----------------------
Confidence 3678889999999998888755443332221111111222223344333332222211
Q ss_pred ecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 008050 450 EGHVKPVLGISFSPN---GYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 450 ~~~~~~I~si~~sp~---g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
..+...|..+.|+|. +.+|++-+.|+++++||+...
T Consensus 143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 113345788999985 689999999999999999753
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.20 E-value=0.75 Score=50.75 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=75.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeC-CCeEEEEEECCCEEEEEEC----
Q 008050 452 HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQ-EGYFLVTGSYDMTVKVWSG---- 525 (579)
Q Consensus 452 ~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~-~~~~l~sgs~dg~I~iwd~---- 525 (579)
......-+.-+.-++.-++.+....+.|||.+.+...+.-. ...+.|.++.|... .++.+++.|..+.|.+|.-
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 33445555555556655555556689999998887555433 34678999998642 3566777788889999852
Q ss_pred -----CCCeEEEEe--cCCC-CcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 526 -----RDFKLVKSL--SGHE-AKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 526 -----~~~~~~~~l--~~h~-~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
..+..+..+ ..|+ .+|.+..|.++|.+++.+ ++.+.|++-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 233444444 2343 578999999998765544 3568888743
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.95 Score=42.24 Aligned_cols=172 Identities=13% Similarity=0.166 Sum_probs=99.8
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCe
Q 008050 380 SGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILALEGHVKPV 456 (579)
Q Consensus 380 ~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I 456 (579)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-|. +....-.+|...+||.++.+++..+... +.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~-GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-Ccc
Confidence 4555655554 35799999999988776543322222111111222 3334456888999999988887766532 223
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE
Q 008050 457 LGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
..++. ++..|+.+....+++.-|-.+.....++.. .-..++.+.|- .|.+.+-.-.+..|...+..+|+.+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence 44443 555677776667788777666544433321 11234445555 2555555555556666666777665
Q ss_pred EEec------------CCCCcEEEEEEcCCCCE-EEEE
Q 008050 532 KSLS------------GHEAKVTSLDIHPDEQS-IATV 556 (579)
Q Consensus 532 ~~l~------------~h~~~V~~l~~s~dg~~-L~s~ 556 (579)
..+. .|.+-.+.+++.+++.. ++||
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 5432 24456788999998754 4554
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.13 E-value=0.0036 Score=68.77 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=45.6
Q ss_pred CCeEEEEeCC--CCeeEEE-----EeCCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEE
Q 008050 307 SGVVKIWSMP--RLQKFSA-----LKGHTERATDVTFSP---VSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMA 376 (579)
Q Consensus 307 dg~I~iwd~~--~~~~~~~-----l~~h~~~V~~l~~sp---~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~ 376 (579)
-|.+.||++. .|+.... .......+.-|.|+| +.-++..+-.++.|++.+.+......+.+|...+..++
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHH
Confidence 3667788875 2332222 222334456666665 55677777788888888766554455666777777666
Q ss_pred EecCC
Q 008050 377 FHPSG 381 (579)
Q Consensus 377 ~sp~~ 381 (579)
|...|
T Consensus 232 ~~~~g 236 (1283)
T KOG1916|consen 232 FFAEG 236 (1283)
T ss_pred HHhhc
Confidence 55444
No 443
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.2 Score=57.12 Aligned_cols=141 Identities=7% Similarity=-0.049 Sum_probs=87.2
Q ss_pred CeEEEEEccCCCEEEEE--eCCCcEEEEeCCCCe------eEEEe------cccCCeEEEEEecCCC-EEEEEeCCCeEE
Q 008050 330 RATDVTFSPVSNHVATS--SADRTARLWNTDGSL------LNTFQ------GHLDRLARMAFHPSGK-YLGTTSFDKTWR 394 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~--s~dg~I~iwd~~~~~------~~~~~------~h~~~I~~l~~sp~~~-~l~s~s~dg~I~ 394 (579)
.|..+..++|+...++. +.+-.|..||+..-. ..-+. ....-..++.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555555666554433 333478888854311 11111 1223345777887543 456677889888
Q ss_pred EEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec----CCCCeEEEEEcCCCCEEEE
Q 008050 395 LWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG----HVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 395 lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~----~~~~I~si~~sp~g~~l~t 470 (579)
+..+................+|++|+|.|..+++|...|++.-|-.. ++....+.+ ....|.+|+|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88775443333222445678999999999999999999999888653 222222211 1467999999887766665
Q ss_pred E
Q 008050 471 G 471 (579)
Q Consensus 471 g 471 (579)
-
T Consensus 261 y 261 (1405)
T KOG3630|consen 261 Y 261 (1405)
T ss_pred e
Confidence 4
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.98 E-value=5.7 Score=41.81 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----
Q 008050 414 VYGIAFHPDGSLAASCGLDALARVWDLRTGRS--ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK----- 486 (579)
Q Consensus 414 V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~--~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~----- 486 (579)
...+..+++|.+++.+.....++-||- |.. ...-......++++.|.+++..++++ .+|.+. |....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 445566778777776654433344443 221 11112234558899999998877766 456554 3333443
Q ss_pred eeEEEeC--CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe---cCCCCcEEEEEEcCCCCEEEEEEcCCe
Q 008050 487 SLYVIPA--HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL---SGHEAKVTSLDIHPDEQSIATVSHDRW 561 (579)
Q Consensus 487 ~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 561 (579)
....+.. ....+..+.|.++ +..+ .++..|.+.... ..++.-... ..-....+.+.|..+++.+++| .+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d-~~~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSK-KEAW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcCC-CcEE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 2233222 2234788888865 4544 456677666654 333332222 2334568899998776655554 6887
Q ss_pred EEEE
Q 008050 562 IKLW 565 (579)
Q Consensus 562 I~iW 565 (579)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7655
No 445
>PLN02153 epithiospecifier protein
Probab=94.98 E-value=5.1 Score=41.24 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=70.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec-----C-CCCeEEEEEcCCCCEEEEEeCC-----------CeEEE
Q 008050 380 SGKYLGTTSFD-----KTWRLWDVDTGVELLLQEG-----H-SRSVYGIAFHPDGSLAASCGLD-----------ALARV 437 (579)
Q Consensus 380 ~~~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~-----~-~~~V~~l~~spdg~~l~sg~~d-----------g~I~i 437 (579)
++.+++.|+.+ ..+.+||..+.+-...... . ...-.+++. -++++++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45566666653 3578899877654332110 1 111122222 356677777753 24778
Q ss_pred EeCCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceeEEEeC---CC-
Q 008050 438 WDLRTGRSILALEGH-----VKPVLGISFSPNGYHLATGGED-------------NTCRIWDLRKRKSLYVIPA---HS- 495 (579)
Q Consensus 438 wd~~~~~~~~~~~~~-----~~~I~si~~sp~g~~l~tgs~D-------------g~I~iwDl~~~~~~~~~~~---~~- 495 (579)
||..+.+-.. +... ...-.+++. -++++++.|+.+ +.+.+||+.+.+-...-.. ..
T Consensus 164 yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 164 YNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 8887654321 1111 111112222 255555555432 4588899876543322110 11
Q ss_pred CCeEEEEEeeCCCeEEEEEECC--------------CEEEEEECCCCe
Q 008050 496 NLISQVKFEPQEGYFLVTGSYD--------------MTVKVWSGRDFK 529 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~sgs~d--------------g~I~iwd~~~~~ 529 (579)
....++... ++.+++.|+.. +.+..||..+.+
T Consensus 242 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 242 RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 111222222 46777777742 257888876554
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.93 E-value=4.6 Score=41.22 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=53.3
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEE---EEEecCCCC--eEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCe
Q 008050 380 SGKYLGTTSFD-----KTWRLWDVDTGVEL---LLQEGHSRS--VYGIAFHPDGSLAASCGL-----DALARVWDLRTGR 444 (579)
Q Consensus 380 ~~~~l~s~s~d-----g~I~lwd~~~~~~~---~~~~~~~~~--V~~l~~spdg~~l~sg~~-----dg~I~iwd~~~~~ 444 (579)
++..++.|+.+ ..+..||+.+.... ......... -.+++.. ++.+++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 35777787765531 111111111 1122222 5667777764 2467888987654
Q ss_pred EEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 008050 445 SILA--LEGHVKPVLGISFSPNGYHLATGGEDN----TCRIWDLRKRK 486 (579)
Q Consensus 445 ~~~~--~~~~~~~I~si~~sp~g~~l~tgs~Dg----~I~iwDl~~~~ 486 (579)
-... +... ......+..-++++.+.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3221 1111 1112222333667777777654 35688887654
No 447
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.88 E-value=6.2 Score=41.71 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=85.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe-----eEEEecccCCeEEEEEec----CCCEEEEEeCCCeEEEEECCC--Cc------
Q 008050 340 SNHVATSSADRTARLWNTDGSL-----LNTFQGHLDRLARMAFHP----SGKYLGTTSFDKTWRLWDVDT--GV------ 402 (579)
Q Consensus 340 ~~~l~s~s~dg~I~iwd~~~~~-----~~~~~~h~~~I~~l~~sp----~~~~l~s~s~dg~I~lwd~~~--~~------ 402 (579)
.+.|++|+..|.++||+..... +..-.....+|..+..-. .....++.-.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4689999999999999954321 222233446677666532 222333335567788887722 11
Q ss_pred -EEEEEecCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 403 -ELLLQEGHS--RSVYGIAFHP----D-GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 403 -~~~~~~~~~--~~V~~l~~sp----d-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
.+.....|. ...+.+++-+ . ..++++-+.||.+.+|+-+.......+.. .--...++|.+.-..|++++.+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence 122222332 3344455444 2 34888899999999999665443333332 2223456788877889999988
Q ss_pred CcEEEEEC
Q 008050 475 NTCRIWDL 482 (579)
Q Consensus 475 g~I~iwDl 482 (579)
..+..|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 88888864
No 448
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.86 E-value=1.1 Score=49.42 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=74.4
Q ss_pred cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEeCC----
Q 008050 369 LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE-GHSRSVYGIAFH--PDGSLAASCGLDALARVWDLR---- 441 (579)
Q Consensus 369 ~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~s--pdg~~l~sg~~dg~I~iwd~~---- 441 (579)
.....-+.-+.-++..++.+....+.|||...+....... ...+.|.++.|. |+|+.+++.|..+.|.+|--.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3444555555556555555566789999998887443322 446789999986 488888888899999988531
Q ss_pred -C----CeEEEEE--ecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 442 -T----GRSILAL--EGHV-KPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 442 -~----~~~~~~~--~~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
+ ...+..+ ..+. .+|.+.+|..+|..++.+ ++.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 1222222 2233 579999999999655543 357888874
No 449
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.84 E-value=0.75 Score=49.30 Aligned_cols=148 Identities=15% Similarity=0.214 Sum_probs=89.0
Q ss_pred CCeeEEEEcCCCCEEEEEe--cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC----CEEEEEeCCCcEEEEeCCC-
Q 008050 287 RPLSGCSYSHDGNLLATSS--LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS----NHVATSSADRTARLWNTDG- 359 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~----~~l~s~s~dg~I~iwd~~~- 359 (579)
.+|.+++|.-..+.++|.- .+|.+++=| ... -|.-..|..+.|.|-+ ..|+.......|.+|.+..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 4677888875444555442 234433322 112 2344568999999853 3566667778999998431
Q ss_pred -----CeeEEEecccC-----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-EEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 360 -----SLLNTFQGHLD-----RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-ELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 360 -----~~~~~~~~h~~-----~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
+.+.....+.. --..+.|||....|++-.....=.++++.... .+..--...+-|.|.+|..||+.|++
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 22222111111 12467899999988887766655566665432 22222245678999999999997665
Q ss_pred E-eCCCeEEEEeCC
Q 008050 429 C-GLDALARVWDLR 441 (579)
Q Consensus 429 g-~~dg~I~iwd~~ 441 (579)
+ +..=.-+|||-.
T Consensus 173 AvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 173 AVGSSLHSYIWDSA 186 (671)
T ss_pred EeCCeEEEEEecCc
Confidence 5 334456788854
No 450
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.76 E-value=6.1 Score=41.03 Aligned_cols=193 Identities=19% Similarity=0.247 Sum_probs=112.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEe----cCCCE--EEEEeC-C---CeEEEEECC--CCcEEEE
Q 008050 339 VSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFH----PSGKY--LGTTSF-D---KTWRLWDVD--TGVELLL 406 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~s----p~~~~--l~s~s~-d---g~I~lwd~~--~~~~~~~ 406 (579)
...+++....++-+.+||++|+.+..+.. ++++.+..- -.|+. |++++. + .+|++|-+. ++.....
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 44677888888999999999999988752 344444432 23442 444443 2 479999775 3332221
Q ss_pred Ee------cCCCCeEEEEEc--C-CCC-EEEEEeCCCeEEEEeCC---CC----eEEEEEecCCCCeEEEEEcCCCCEEE
Q 008050 407 QE------GHSRSVYGIAFH--P-DGS-LAASCGLDALARVWDLR---TG----RSILALEGHVKPVLGISFSPNGYHLA 469 (579)
Q Consensus 407 ~~------~~~~~V~~l~~s--p-dg~-~l~sg~~dg~I~iwd~~---~~----~~~~~~~~~~~~I~si~~sp~g~~l~ 469 (579)
.. .....++.+|+. + +|. +++..+.+|.+..|-+. .+ +.++.|... ..+-.+.......+|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCCEE
Confidence 11 112347777764 3 454 66677889988877664 33 456777643 3688888888778999
Q ss_pred EEeCCCcEEEEECCC-----CceeEEEeC--CCCCeEEEEEee--CC-CeEEEEEECCCEEEEEECCC-CeEEEEe
Q 008050 470 TGGEDNTCRIWDLRK-----RKSLYVIPA--HSNLISQVKFEP--QE-GYFLVTGSYDMTVKVWSGRD-FKLVKSL 534 (579)
Q Consensus 470 tgs~Dg~I~iwDl~~-----~~~~~~~~~--~~~~V~~v~~sp--~~-~~~l~sgs~dg~I~iwd~~~-~~~~~~l 534 (579)
.|-++.-|.-|+..- +..+....+ ....|-.+.+-. ++ +++|++.-.+++..||+... ...+..|
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 999988888887752 222222222 224566677643 22 44555555688999999764 3444444
No 451
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.60 E-value=4.6 Score=43.80 Aligned_cols=145 Identities=19% Similarity=0.122 Sum_probs=77.4
Q ss_pred CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCC---eEEEEEcCCC
Q 008050 389 FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKP---VLGISFSPNG 465 (579)
Q Consensus 389 ~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~---I~si~~sp~g 465 (579)
..+...++|.+ |...............+...++|.+++..+ +.+..+|+- |+.+..+...... =..+.+.|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 34556666653 333333322111111166778898877665 888888874 6655554432211 2457788999
Q ss_pred CEEEEEeC-------------CCcEEEEECCCCceeEEEeC--C----C---------------------CCeEEEEEee
Q 008050 466 YHLATGGE-------------DNTCRIWDLRKRKSLYVIPA--H----S---------------------NLISQVKFEP 505 (579)
Q Consensus 466 ~~l~tgs~-------------Dg~I~iwDl~~~~~~~~~~~--~----~---------------------~~V~~v~~sp 505 (579)
++|+.+.. ...|..+| .+|+.+..+.. | . --++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99888772 12355666 66666655421 1 0 1278899998
Q ss_pred CCCeEEEEEECCCEEEEEECCCCeEEEEecCCC
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE 538 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 538 (579)
.++.+|+++-.-..|...|.++++....+..|.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 667888877767789999999999888886553
No 452
>KOG2808 consensus U5 snRNP-associated RNA splicing factor [RNA processing and modification]
Probab=94.59 E-value=0.05 Score=53.30 Aligned_cols=31 Identities=48% Similarity=0.731 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCeEecCCchhhhhHHHHHHHH
Q 008050 153 VRARLRRLGEPITFFGEREMERRDRLRMLMA 183 (579)
Q Consensus 153 v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l~ 183 (579)
|+.|||.+|+||++|||.+.+.++||+....
T Consensus 80 v~~rLre~~~Pi~lfGEtd~~~k~rl~~~e~ 110 (341)
T KOG2808|consen 80 VIRRLRERGEPIILFGETDKSAKDRLRQKEI 110 (341)
T ss_pred HHHHHHHcCCCccccCCCCHHHHHHHHHhcc
Confidence 9999999999999999999999999998754
No 453
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.38 E-value=1.1 Score=49.09 Aligned_cols=73 Identities=15% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee--EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK--FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLN 363 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~ 363 (579)
..-++++.-+|.|.-++.++.||.|.+|++..... ++... .+-..+.|.. .-|++...|..+.-|..+|-...
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn--hgl~~~tsdrr~la~~~dgvvqq 88 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN--HGLVTATSDRRALAWKEDGVVQQ 88 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec--cceEEEeccchhheeeccCcchh
Confidence 34567788889999999999999999999765433 22221 2233445543 34777888888888887664333
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.36 E-value=4.5 Score=38.24 Aligned_cols=139 Identities=20% Similarity=0.198 Sum_probs=83.7
Q ss_pred CEEEEEeCCCeEEEEeCCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC------cEEEE-ECCC----CceeE-
Q 008050 424 SLAASCGLDALARVWDLRT--GRSILALEGHVKPVLGISFSPNGYHLATGGEDN------TCRIW-DLRK----RKSLY- 489 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg------~I~iw-Dl~~----~~~~~- 489 (579)
..|+.+...+.|.+|++.. .+....|..- +.|..+.++..|+||++--.++ .+++| |.+. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3555556678899999983 3455666544 7799999999999999965322 56665 2221 11221
Q ss_pred EEeCC---------------------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE-E-----EEec----C-C
Q 008050 490 VIPAH---------------------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL-V-----KSLS----G-H 537 (579)
Q Consensus 490 ~~~~~---------------------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~-~-----~~l~----~-h 537 (579)
.+-+| .....+++..|..|++++. .++++.+|.+..... . ..|. . |
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 11111 2345677777877887763 367899997654332 1 1111 1 2
Q ss_pred CC-cEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 538 EA-KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 538 ~~-~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+ ....++|. +.|++..+ +-.++++.+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 22 24666666 66888776 5568877663
No 455
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.33 E-value=7.9 Score=40.51 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=26.3
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEecCCCCe--EEEEEcCCCCEEEEEeCC
Q 008050 380 SGKYLGTTSFD-----------KTWRLWDVDTGVELLLQEGHSRSV--YGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 380 ~~~~l~s~s~d-----------g~I~lwd~~~~~~~~~~~~~~~~V--~~l~~spdg~~l~sg~~d 432 (579)
++.+++.|+.+ ..+..||..+..-........... .+....-++.+++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45566666543 247778887654433221111111 112221467778887754
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.29 E-value=8.3 Score=40.61 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=80.7
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE-----E
Q 008050 372 LARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS-----I 446 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~-----~ 446 (579)
...+...+++.+++.+.....++-||--...-..........++.+.|.+++.+++++ ..|.+. |....++. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3445566777766666544434444432211122223445678899999999877766 456543 33344431 2
Q ss_pred EEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe---CCCCCeEEEEEeeCCCeEEEEEECCCEEE
Q 008050 447 LALEG--HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP---AHSNLISQVKFEPQEGYFLVTGSYDMTVK 521 (579)
Q Consensus 447 ~~~~~--~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~---~~~~~V~~v~~sp~~~~~l~sgs~dg~I~ 521 (579)
..... ....+.++.|.+++..+++| ..|.+.... ..++.-.... .-...++.+.|..+ +..++ .+.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~-~~g~~-~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD-KKGFV-LGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC-CceEE-EeCCcEEE
Confidence 22221 12348899999887665554 567666553 4455433332 12345778888764 44444 46678776
Q ss_pred EE
Q 008050 522 VW 523 (579)
Q Consensus 522 iw 523 (579)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.10 E-value=2.5 Score=44.57 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=82.5
Q ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCC--------CEEEEEeCCCeEEEEeCCC-CeEEEE--Eec--
Q 008050 385 GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG--------SLAASCGLDALARVWDLRT-GRSILA--LEG-- 451 (579)
Q Consensus 385 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg--------~~l~sg~~dg~I~iwd~~~-~~~~~~--~~~-- 451 (579)
..|+....++-.|++.|+.+-....|..- -+.|.|+. +.|+ |-.+..|.-.|.|- |..+.. ++.
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcc
Confidence 34555678888899999988888766654 46777743 2344 44455555556653 322222 111
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 452 HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 452 ~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
......|..-..+| |+++++..|-|++||--..+....+++-...|..+....++..+|++| ...+.+.|++
T Consensus 561 tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred ccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 11123333333444 899999999999999543333444556667788888888644444444 3467777754
No 458
>PLN02193 nitrile-specifier protein
Probab=94.03 E-value=11 Score=40.89 Aligned_cols=146 Identities=12% Similarity=0.028 Sum_probs=74.3
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec----CCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeE
Q 008050 380 SGKYLGTTSFD-----KTWRLWDVDTGVELLLQEG----HSRSVYGIAFHPDGSLAASCGLDA-----LARVWDLRTGRS 445 (579)
Q Consensus 380 ~~~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~----~~~~V~~l~~spdg~~l~sg~~dg-----~I~iwd~~~~~~ 445 (579)
++.+++.|+.+ ..+..||+.+.+-...... ....-.++.. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566666654 3588899887654432211 1111122222 2566777777543 467788876543
Q ss_pred EEEEe-----cCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEeC---C-CCCeEEEEEeeCCCeEEE
Q 008050 446 ILALE-----GHVKPVLGISFSPNGYHLATGGED----NTCRIWDLRKRKSLYVIPA---H-SNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 446 ~~~~~-----~~~~~I~si~~sp~g~~l~tgs~D----g~I~iwDl~~~~~~~~~~~---~-~~~V~~v~~sp~~~~~l~ 512 (579)
...-. ..... ..++. -++++++.|+.+ ..+.+||+.+.+-...-.. . .....+++.. ++.+++
T Consensus 307 ~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEE
Confidence 21110 00111 11222 256677777655 4588999887654322111 1 1111222222 466777
Q ss_pred EEECC--------------CEEEEEECCCCeE
Q 008050 513 TGSYD--------------MTVKVWSGRDFKL 530 (579)
Q Consensus 513 sgs~d--------------g~I~iwd~~~~~~ 530 (579)
.|+.+ +.+.+||..+.+.
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 77753 2478889876554
No 459
>PLN02153 epithiospecifier protein
Probab=93.99 E-value=8.5 Score=39.61 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred CCCEEEEEecC-------CeEEEEeCCCCeeEEEEeCC----CC---CeEEEEEccCCCEEEEEeCC-----CcEEEEeC
Q 008050 297 DGNLLATSSLS-------GVVKIWSMPRLQKFSALKGH----TE---RATDVTFSPVSNHVATSSAD-----RTARLWNT 357 (579)
Q Consensus 297 dg~~latgs~d-------g~I~iwd~~~~~~~~~l~~h----~~---~V~~l~~sp~~~~l~s~s~d-----g~I~iwd~ 357 (579)
++.+++.|+.+ ..+.+||..+.+-.. +... .. ....+.+ ++.+++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666777653 357788877643221 1111 00 1122222 45666777653 35777886
Q ss_pred CCCeeEEEecc------cCCeEEEEEecCCCEEEEEeCC-----------CeEEEEECCCCcEEEEEec----CCCCeEE
Q 008050 358 DGSLLNTFQGH------LDRLARMAFHPSGKYLGTTSFD-----------KTWRLWDVDTGVELLLQEG----HSRSVYG 416 (579)
Q Consensus 358 ~~~~~~~~~~h------~~~I~~l~~sp~~~~l~s~s~d-----------g~I~lwd~~~~~~~~~~~~----~~~~V~~ 416 (579)
....-..+... ..+.......-++++++.|+.+ ..+.+||..+..-...... ....-.+
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce
Confidence 65443333211 1111112222356666666653 2577889877654332111 1111112
Q ss_pred EEEcCCCCEEEEEeCC-------------CeEEEEeCCCCeEEEEEe-c--C-CCCeEEEEEcCCCCEEEEEeCC-----
Q 008050 417 IAFHPDGSLAASCGLD-------------ALARVWDLRTGRSILALE-G--H-VKPVLGISFSPNGYHLATGGED----- 474 (579)
Q Consensus 417 l~~spdg~~l~sg~~d-------------g~I~iwd~~~~~~~~~~~-~--~-~~~I~si~~sp~g~~l~tgs~D----- 474 (579)
++. -++++++.|+.+ ..+.+||+.+.+-...-. + . .....++. .-++++++.|+..
T Consensus 189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~ 266 (341)
T PLN02153 189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLK 266 (341)
T ss_pred EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCccc
Confidence 222 255566655432 457889987765332211 0 1 11112222 2256677777742
Q ss_pred ---------CcEEEEECCCCc
Q 008050 475 ---------NTCRIWDLRKRK 486 (579)
Q Consensus 475 ---------g~I~iwDl~~~~ 486 (579)
+.+..||+.+..
T Consensus 267 ~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 267 GHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccEEEEEcCccE
Confidence 257788876543
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.80 E-value=1.4 Score=46.49 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=93.4
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCC-------CEEEEEeCCCcEEEEECCC-CceeEEE
Q 008050 421 PDGSLAA-SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG-------YHLATGGEDNTCRIWDLRK-RKSLYVI 491 (579)
Q Consensus 421 pdg~~l~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g-------~~l~tgs~Dg~I~iwDl~~-~~~~~~~ 491 (579)
.|.++|+ .|+....++-.|+.-|+.+-.+..|... -+.|.|.. ..-++|-.+..|.-.|.|- |..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444444 4556678888899999999999888764 56777742 2334566677777777664 3222222
Q ss_pred eC----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 492 PA----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 492 ~~----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.. ..+..++..-. ...|++++|..|.|++||--...-...+.+....|..+..+.+|++|++.+. ..|.+-++
T Consensus 555 esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eehhccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 11222222222 2458899999999999995444444455667788999999999999877664 45777766
Q ss_pred C
Q 008050 568 R 568 (579)
Q Consensus 568 ~ 568 (579)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 461
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.78 E-value=0.0082 Score=62.09 Aligned_cols=147 Identities=17% Similarity=0.234 Sum_probs=103.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEEecCC
Q 008050 333 DVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDTGVELLLQEGHS 411 (579)
Q Consensus 333 ~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~ 411 (579)
...|-+.+.-++.++.+..+..||..++...... ..+....++|..++..++ .+-..+.+.+||+.+......-.+..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~ 117 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT 117 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence 4456666666888888899999997766554443 234456788888887544 45667999999997754332222222
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 412 RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 412 ~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
..-.-+.|++.+..++.|...|.+.||+..+.+.+.....|...+++++|.+.+. .+.++.|..+.+-.
T Consensus 118 ~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 118 SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTT 186 (615)
T ss_pred chHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhh
Confidence 2222267898888999999999999999988887777766899999999999774 44555565554433
No 462
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.78 E-value=9.9 Score=39.63 Aligned_cols=191 Identities=15% Similarity=0.093 Sum_probs=107.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-eEEEecc--cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-CCeEE
Q 008050 341 NHVATSSADRTARLWNTDGSL-LNTFQGH--LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS-RSVYG 416 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~~~~~-~~~~~~h--~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~~V~~ 416 (579)
..++.+..+|.|.-.|.++.. +...... ...+..-.+..+|+ +++++.++.++.+|..+|+.+..+.... -.+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 445555777777777755433 2221111 12222222333564 8888889999999999999888876655 11111
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEE
Q 008050 417 IAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVK---PVLGISFSPNGYHLATGGE--DNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 417 l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~I~si~~sp~g~~l~tgs~--Dg~I~iwDl~~~~~~~~~ 491 (579)
-.+-.++ .+..++.+|.+...|..+|+.......... .+..--.. ....++.+.. ++.+.-+|..++......
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 1222233 444444789999999999988776543221 11111111 2234555555 566777788788777664
Q ss_pred eCC----CCCe------EEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC
Q 008050 492 PAH----SNLI------SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 492 ~~~----~~~V------~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 536 (579)
..+ ...+ ..-...- ++ -++.++.+|.+...+..+++.+..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v-~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYV-DG-GVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEE-CC-cEEEEecCCeEEEEEcCCCceEEEEec
Confidence 321 1111 0001111 12 235667788899999999988887765
No 463
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=6.8 Score=40.94 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=87.6
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCC--eeEEEE-eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-----
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRL--QKFSAL-KGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL----- 361 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~--~~~~~l-~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~----- 361 (579)
+.+-|...++.|++ ...|.+.=|-+... ...-.+ ....+.|.+|.|++|++.|++--.++.|.+++..+..
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 33444443444443 33444555554322 111222 2356799999999999999999999999999964321
Q ss_pred eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEE
Q 008050 362 LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHPDGSLAASCG--LDALARVW 438 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~spdg~~l~sg~--~dg~I~iw 438 (579)
..+.+.....|..++|..+ .-++..+..| +-+|-+... ..+...+.|+-.|+-..|.++.+.++.++ ..+.+.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 1222334456888999866 4455444333 445544322 23344456777888888999887544433 33344434
Q ss_pred eCCCC
Q 008050 439 DLRTG 443 (579)
Q Consensus 439 d~~~~ 443 (579)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 44433
No 464
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.64 E-value=9.8 Score=39.17 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEecCCCCeEEE-EE-cCCCCEEEEEeCC
Q 008050 380 SGKYLGTTSFD-----------KTWRLWDVDTGVELLLQEGHSRSVYGI-AF-HPDGSLAASCGLD 432 (579)
Q Consensus 380 ~~~~l~s~s~d-----------g~I~lwd~~~~~~~~~~~~~~~~V~~l-~~-spdg~~l~sg~~d 432 (579)
+++..+.|+.+ ..+..||..+..-............+. .. .-++++++.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666666643 247778887665433221111111111 11 2467778888764
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.58 E-value=9.6 Score=38.86 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=36.0
Q ss_pred CCCEEEEEeC-----CCeEEEEECCCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCe
Q 008050 380 SGKYLGTTSF-----DKTWRLWDVDTGVELLLQEGH-SRSVYGIAFHPDGSLAASCGLDA----LARVWDLRTGR 444 (579)
Q Consensus 380 ~~~~l~s~s~-----dg~I~lwd~~~~~~~~~~~~~-~~~V~~l~~spdg~~l~sg~~dg----~I~iwd~~~~~ 444 (579)
+++.++.|+. ...+..||+.+.+-....... ..........-++.+++.|+.++ .+.+||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4666666664 246888998876543322111 11112222233567888887664 35688887764
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=2.3 Score=50.05 Aligned_cols=223 Identities=11% Similarity=0.048 Sum_probs=101.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccC--CeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLD--RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL 406 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~--~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~ 406 (579)
.....++|++...+++.++..|.|++|-..+-.......... .+..+.+-...........+..+.+|.......+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-- 113 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV-- 113 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence 356778899999999999999999999855432221111111 1122222222222333344455555554322221
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-R 485 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-~ 485 (579)
.+...+++....+--.+ +.| ..+.+++||..-.... .+. +....++....+....-... ..|.... +
T Consensus 114 --~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~ 181 (993)
T KOG1983|consen 114 --FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLS-DLK-----YAGTESSNFVPYESLSPTLS--IEGLVIDLD 181 (993)
T ss_pred --ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhc-cce-----eccccccccceeeeecccee--eeccccccc
Confidence 12223333332222123 444 7788888876422111 000 00000000000000000000 0111111 1
Q ss_pred cee-------EEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 486 KSL-------YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 486 ~~~-------~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
..+ ..+..+...+.+..+...+. +..+..-+.+-+|+.........+. +....++.++..++++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~ 254 (993)
T KOG1983|consen 182 TVLISLPDAYLGLSLIEYESLQVLYYSPTK--ILIGFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHT 254 (993)
T ss_pred cceeecccccccccccccccceeeeecCCC--cceeeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEe
Confidence 111 12223344444444443222 3334455666666644332222222 222222788999999999
Q ss_pred CCeEEEEEcCCCCc
Q 008050 559 DRWIKLWSTRNKGD 572 (579)
Q Consensus 559 Dg~I~iW~~~~~~~ 572 (579)
||.+.+||...+..
T Consensus 255 Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 255 DGSYAFWDVSSGKL 268 (993)
T ss_pred cCCEEeeecCCCce
Confidence 99999999988654
No 467
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.53 E-value=2 Score=47.90 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCCEEEEEeCCCeEEEEECCC-------C----cE--------EEEEecCCCCeEEEEEc--CCCCEEEEEeCCCeEEEE
Q 008050 380 SGKYLGTTSFDKTWRLWDVDT-------G----VE--------LLLQEGHSRSVYGIAFH--PDGSLAASCGLDALARVW 438 (579)
Q Consensus 380 ~~~~l~s~s~dg~I~lwd~~~-------~----~~--------~~~~~~~~~~V~~l~~s--pdg~~l~sg~~dg~I~iw 438 (579)
....|+.+..||.|.+|.+++ . .. -.........+++++++ ...++||++++...|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 445777888888888886521 0 00 00112234578999999 788899999999988887
Q ss_pred eCCCC--eEEE-EEecCCCCeEEEEEcCCC-----C-EEEEEeCCCcEEEEEC
Q 008050 439 DLRTG--RSIL-ALEGHVKPVLGISFSPNG-----Y-HLATGGEDNTCRIWDL 482 (579)
Q Consensus 439 d~~~~--~~~~-~~~~~~~~I~si~~sp~g-----~-~l~tgs~Dg~I~iwDl 482 (579)
-.... +... .-..+...|.+|+|.++. . +|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 55432 1111 111255668999997742 2 7888889999999887
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.51 E-value=4.6 Score=42.98 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 008050 454 KPVLGISFSPNGYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
..|.++++.+..+.|++.+.+|.|.+||+..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999988899999999999999999753
No 469
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.44 E-value=9.8 Score=38.51 Aligned_cols=230 Identities=12% Similarity=0.018 Sum_probs=111.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCC-eeEEEEeCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCe-------------
Q 008050 297 DGNLLATSSLSGVVKIWSMPRL-QKFSALKGHTERATDVTFSPVSNHVATSSA-DRTARLWNTDGSL------------- 361 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~~~~~------------- 361 (579)
++++|+.|+.+|...+. +... .....+ .+...|+++...+..+.|++-+. ...++++++..-.
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl-~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKL-IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEe-cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 44689999998866655 5432 222222 35668999999988777666553 3459999842100
Q ss_pred ---eEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCC--cE--EEE----EecCCCCeEEEEEcCC--CCEEE
Q 008050 362 ---LNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTG--VE--LLL----QEGHSRSVYGIAFHPD--GSLAA 427 (579)
Q Consensus 362 ---~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~--~~--~~~----~~~~~~~V~~l~~spd--g~~l~ 427 (579)
......+......+.+.... ..++++....+|.+|..... +. ... .......+..+..+++ ...++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 01122333323333333222 23445555667766644322 11 111 0011123333333332 45677
Q ss_pred EEeCCCeEEEEeCCC--CeEE---EE--EecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEeCCCCC
Q 008050 428 SCGLDALARVWDLRT--GRSI---LA--LEGHV-KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL--YVIPAHSNL 497 (579)
Q Consensus 428 sg~~dg~I~iwd~~~--~~~~---~~--~~~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~--~~~~~~~~~ 497 (579)
.|+..+...++++.. .... .. ..... .++..+.+ +++.+|++ - |....+.|....+.. ..+.- ...
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w-~~~ 245 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHW-EFM 245 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-E-CcEEEEEeCCCCccccceEEEc-CCc
Confidence 777653334444432 1100 00 11111 33333333 34544443 3 334555565421221 12222 334
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 536 (579)
..++++.. +++++ -+ ++.|.++++.++++++.+..
T Consensus 246 p~~~~~~~--pyll~-~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLA-FH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEE-Ec-CCcEEEEECCCCceEEEEec
Confidence 56677763 44444 33 45599999999999888863
No 470
>PRK05560 DNA gyrase subunit A; Validated
Probab=93.31 E-value=20 Score=41.63 Aligned_cols=228 Identities=9% Similarity=0.018 Sum_probs=118.7
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC--------ee--EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC---CC----
Q 008050 338 PVSNHVATSSADRTARLWNTDGS--------LL--NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV---DT---- 400 (579)
Q Consensus 338 p~~~~l~s~s~dg~I~iwd~~~~--------~~--~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~---~~---- 400 (579)
++...+++-+.+|.|+--....- -. ..++ ..+.+..+....+...|+..+..|.+..... ..
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~ 574 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRT 574 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcC
Confidence 34567777788888877653211 01 1111 1234444444556667777777887766644 22
Q ss_pred --CcEE---EEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 008050 401 --GVEL---LLQEGHSRSVYGIAFHP--DGSLAASCGLDALARVWDLRT-------GRSILALEGHVKPVLGISFSPNGY 466 (579)
Q Consensus 401 --~~~~---~~~~~~~~~V~~l~~sp--dg~~l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~I~si~~sp~g~ 466 (579)
|..+ ..+.....-+.++.+.. +...++..+.+|.++-.++.. |.....++.. ..+..+.......
T Consensus 575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~~d 653 (805)
T PRK05560 575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDGDD 653 (805)
T ss_pred CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCCCC
Confidence 2211 11111222344455542 566889999999998776542 2333344433 3344444444445
Q ss_pred EEEEEeCCCcEEEEECCC---------CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC---------
Q 008050 467 HLATGGEDNTCRIWDLRK---------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF--------- 528 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~---------~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~--------- 528 (579)
.|+..+..|.+..+.... |.....+......+..+.+.. +..+++..+..|.++...+...
T Consensus 654 ~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~-~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG 732 (805)
T PRK05560 654 DILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVRE-DSQEILTVTENGYGKRTPVSEYRLQGRGGKG 732 (805)
T ss_pred EEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcC-CCcEEEEEEeCCeEEEEEHHHhhccCCCCCc
Confidence 677777788777765432 222222322222233333433 3346777788898888764321
Q ss_pred eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 529 KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 529 ~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.....+....+.+..+........++..+.+|.+..++..
T Consensus 733 ~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 733 VITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 1222333333445444333344456666778877777654
No 471
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=5.2 Score=37.52 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=93.6
Q ss_pred CCEEEEEeC--CCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEEecCCCCeE
Q 008050 340 SNHVATSSA--DRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDTGVELLLQEGHSRSVY 415 (579)
Q Consensus 340 ~~~l~s~s~--dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~ 415 (579)
|.++.+.+. ...|++|++++ +.+....-....+..=-...-|+++. ..-.+|.-..||..+.+++..+. ..+.-+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 455555544 34799999774 33322221111222111122234333 34457888889988877766553 233444
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 008050 416 GIAFHPDGSLAASCGLDALARVWDLRTGRSILALE--GHV---KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYV 490 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~---~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~ 490 (579)
.++. |+..|+.++...+++.-|..+.....+.. ... ..++-+.|- +|...+-.-.+..|...|..+|+.+..
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 4443 45556666656677777766543332221 111 123334443 555555444555666677777776655
Q ss_pred Ee------------CCCCCeEEEEEeeCCCeEEEEE
Q 008050 491 IP------------AHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 491 ~~------------~~~~~V~~v~~sp~~~~~l~sg 514 (579)
+. .|.+..+.+++.++.++++++|
T Consensus 212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 53 2345678899999877888887
No 472
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.79 E-value=14 Score=38.59 Aligned_cols=40 Identities=15% Similarity=-0.042 Sum_probs=20.3
Q ss_pred CeEEEEECCCCcEEEEEecCC--CCeEEEEEcCCCCEEEEEeC
Q 008050 391 KTWRLWDVDTGVELLLQEGHS--RSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 391 g~I~lwd~~~~~~~~~~~~~~--~~V~~l~~spdg~~l~sg~~ 431 (579)
..+.+||..+..-...-.... ..-.++... ++++++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 358889987765543221111 112233333 5667777764
No 473
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=92.75 E-value=23 Score=40.98 Aligned_cols=227 Identities=10% Similarity=0.041 Sum_probs=118.1
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC--------ee--EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------
Q 008050 338 PVSNHVATSSADRTARLWNTDGS--------LL--NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT------- 400 (579)
Q Consensus 338 p~~~~l~s~s~dg~I~iwd~~~~--------~~--~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~------- 400 (579)
++...+++.+.+|.|+-.....- -. ..++ ..+.+..+....+...|+..+..|.+.......
T Consensus 494 ~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~ 572 (800)
T TIGR01063 494 ARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRT 572 (800)
T ss_pred CcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcC
Confidence 34456777778888776653211 01 1111 123444444555666777777778776665421
Q ss_pred --CcEE---EEEecCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEeCCCC-------eEEEEEecCCCCeEEEEEcCCCC
Q 008050 401 --GVEL---LLQEGHSRSVYGIAFH--PDGSLAASCGLDALARVWDLRTG-------RSILALEGHVKPVLGISFSPNGY 466 (579)
Q Consensus 401 --~~~~---~~~~~~~~~V~~l~~s--pdg~~l~sg~~dg~I~iwd~~~~-------~~~~~~~~~~~~I~si~~sp~g~ 466 (579)
|..+ ..+.....-+.++.+. .++..++..+.+|.++-.++... .....+.. ...+..+....+..
T Consensus 573 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d 651 (800)
T TIGR01063 573 AKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDD 651 (800)
T ss_pred CCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCC
Confidence 1111 1111112224444432 24568889999999998876432 22222333 23344444444445
Q ss_pred EEEEEeCCCcEEEEECCC---------CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC-------Ce-
Q 008050 467 HLATGGEDNTCRIWDLRK---------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD-------FK- 529 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~---------~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~-------~~- 529 (579)
.++..+..|.+..+.... |.....+.. ...|.++....+ ..+++..+..|.++...+.. ++
T Consensus 652 ~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~-~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG 729 (800)
T TIGR01063 652 EVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSE-ESYLLIVTENGYGKRTSIEEYRETSRGGKG 729 (800)
T ss_pred EEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEecc-ccEEEEEecCCcEEEEEHHHccccCCCCcc
Confidence 677777778776665432 112222222 223444443333 44577778889888886432 12
Q ss_pred -EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 530 -LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 530 -~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
....+....+.+..+....+...++..+.+|.+..+...
T Consensus 730 v~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 730 VKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred eEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 222333333455555444444557777778887777654
No 474
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.64 E-value=12 Score=37.49 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=92.7
Q ss_pred eEEEEECCCCcEEEEEec------CCCCeEEEEEcCCC-----CEEEEE-eCCCeEEEEeCCCCeEEEEEecC-------
Q 008050 392 TWRLWDVDTGVELLLQEG------HSRSVYGIAFHPDG-----SLAASC-GLDALARVWDLRTGRSILALEGH------- 452 (579)
Q Consensus 392 ~I~lwd~~~~~~~~~~~~------~~~~V~~l~~spdg-----~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~------- 452 (579)
.|.+||+.+++.+..+.- ..+.+..+.+.... .++..+ ...+.|.|||+.+++....+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999987776542 23457777777621 244333 34568999999998766554322
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEECC-----CC---------ceeEEEeCCCCCeEEEEE
Q 008050 453 ------------VKPVLGISFSP---NGYHLATGGEDNTCRIWDLR-----KR---------KSLYVIPAHSNLISQVKF 503 (579)
Q Consensus 453 ------------~~~I~si~~sp---~g~~l~tgs~Dg~I~iwDl~-----~~---------~~~~~~~~~~~~V~~v~~ 503 (579)
...+..++.++ +|++|+.+.-.+ -++|-+. +. ..+..+-...+....+.+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12266666665 666777665433 2223221 11 111222111235667888
Q ss_pred eeCCCeEEEEEECCCEEEEEECCC------CeEEEEecCCCCcEEEEEEcC--CCCEEEEE
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRD------FKLVKSLSGHEAKVTSLDIHP--DEQSIATV 556 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~------~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~ 556 (579)
++. |.++++--..+.|..|+... .+.+..-...-..+.++.+.+ +|.+.+.+
T Consensus 194 D~~-G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPN-GNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETT-TEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCC-CcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 884 88888888899999999875 223322222135678999998 77655544
No 475
>PLN02193 nitrile-specifier protein
Probab=92.58 E-value=18 Score=39.19 Aligned_cols=147 Identities=11% Similarity=-0.004 Sum_probs=73.0
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeEEEecc----cCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEE
Q 008050 339 VSNHVATSSAD-----RTARLWNTDGSLLNTFQGH----LDRLARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGVEL 404 (579)
Q Consensus 339 ~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~h----~~~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~~~ 404 (579)
++.+++.|+.+ ..+..||.....-..+... ..+-......-++++++.|+.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45566667654 3577778665443333221 1111111122245666666654 34678888776543
Q ss_pred EEEec----CCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCeEEEEEec---C-CCCeEEEEEcCCCCEEEEEe
Q 008050 405 LLQEG----HSRSVYGIAFHPDGSLAASCGLD----ALARVWDLRTGRSILALEG---H-VKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 405 ~~~~~----~~~~V~~l~~spdg~~l~sg~~d----g~I~iwd~~~~~~~~~~~~---~-~~~I~si~~sp~g~~l~tgs 472 (579)
..... ....-..+.. -++++++.++.+ ..+.+||+.+.+-...-.. . .....+++ .-++++++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECC
Confidence 22110 0011112222 256677777755 4588999987654322110 1 11112222 22566777777
Q ss_pred CC--------------CcEEEEECCCCce
Q 008050 473 ED--------------NTCRIWDLRKRKS 487 (579)
Q Consensus 473 ~D--------------g~I~iwDl~~~~~ 487 (579)
.+ +.+.+||+.+.+-
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEE
Confidence 43 2478888876543
No 476
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.56 E-value=3.3 Score=44.08 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=25.8
Q ss_pred CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 538 EAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 538 ~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
...|.++.+.+..+.|++.+.+|.|.+|++..++
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~ 222 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGG 222 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-SS-
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCC
Confidence 3448999999888999999999999999997643
No 477
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.56 E-value=4.3 Score=35.31 Aligned_cols=113 Identities=8% Similarity=0.058 Sum_probs=69.5
Q ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCc--------EEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEeCC
Q 008050 375 MAFHPSGKYLGTTSFDKTWRLWDVDTGV--------ELLLQEGHSRSVYGIAFHP-----DGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 375 l~~sp~~~~l~s~s~dg~I~lwd~~~~~--------~~~~~~~~~~~V~~l~~sp-----dg~~l~sg~~dg~I~iwd~~ 441 (579)
-.|......|++++.-|+|.|++..... .+..+ ..+..|++++-.+ +...|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3555566688899999999999876432 22222 4456777776443 233566655 6788999998
Q ss_pred CCeEEEEEecCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008050 442 TGRSILALEGHVKPVLGISFSP----NGYHLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 442 ~~~~~~~~~~~~~~I~si~~sp----~g~~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
....+.....+ ..|+++.+-. ...++++| .+..|.-||....+..++.
T Consensus 82 ~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCc-cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 87766544433 4477776633 23344444 4566777776544444443
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.56 E-value=3.2 Score=46.10 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=106.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecc------cCCeEEEEEecCCCEEEEEeCCCeEEEEE---
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGH------LDRLARMAFHPSGKYLGTTSFDKTWRLWD--- 397 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h------~~~I~~l~~sp~~~~l~s~s~dg~I~lwd--- 397 (579)
-...|...+||.|.+.++....+..|.+++..-..+....-. .+.--.+-|......+---+. .-.+-|
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~--raqlrdptm 188 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGA--RAQLRDPTM 188 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccch--hhhccCCCC
Confidence 466899999999999888888888898888432222221110 011123334322211110000 001111
Q ss_pred ---CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 398 ---VDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD----ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 398 ---~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d----g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
+..|...... .| =.-++|-.|..+.+++... ..+++|. +.|..-.......+.-..++|-|+|..+++
T Consensus 189 p~~vD~G~l~avd-~~---k~~i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~at 263 (1243)
T COG5290 189 PYMVDYGDLFAVD-TN---KKIIFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYAT 263 (1243)
T ss_pred cccccccceeEee-CC---ceEEEEccCcceeeecchhcccccceeeec-cccccccccCCcccchhccccccCCceeee
Confidence 1111111111 11 1235565566666655432 2355554 223222212222233345889999999999
Q ss_pred EeCCC-----cEEEEECCCCceeEEEe---CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEE
Q 008050 471 GGEDN-----TCRIWDLRKRKSLYVIP---AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVT 542 (579)
Q Consensus 471 gs~Dg-----~I~iwDl~~~~~~~~~~---~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~ 542 (579)
-+.|| .|.++.- +|-.-..+. +....+..++|+-. ...++ ....+.|++|-..+....-.....-..+.
T Consensus 264 i~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~-s~vla-v~~~n~~~lwttkNyhWYLK~e~~ip~~s 340 (1243)
T COG5290 264 IGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLL-STVLA-VAEGNLLKLWTTKNYHWYLKVERQIPGIS 340 (1243)
T ss_pred eccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHH-HHHHH-HhhcceEEEEEccceEEEEEEeecCCCcc
Confidence 87655 3555542 221111111 12234556677653 33333 34567899999888765544443444567
Q ss_pred EEEEcCCCC
Q 008050 543 SLDIHPDEQ 551 (579)
Q Consensus 543 ~l~~s~dg~ 551 (579)
-+.|+|...
T Consensus 341 ~vkwhpe~~ 349 (1243)
T COG5290 341 YVKWHPEEK 349 (1243)
T ss_pred eeeeccccC
Confidence 788988543
No 479
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=2.8 Score=41.83 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=7.1
Q ss_pred hhHHHHHHHHhccc
Q 008050 174 RRDRLRMLMAKLDS 187 (579)
Q Consensus 174 ~R~rlr~~l~~~~~ 187 (579)
++++|...+..++.
T Consensus 254 ~~etLEqq~~~L~~ 267 (365)
T KOG2391|consen 254 MKETLEQQLQSLQK 267 (365)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555554443
No 480
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.42 E-value=6.6 Score=46.41 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS 322 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~ 322 (579)
|-......++|++...+++.|+..|.|++|-....+...
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~ 71 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVG 71 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEe
Confidence 444567788999999999999999999999876544443
No 481
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.36 E-value=8.7 Score=38.35 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=90.2
Q ss_pred CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCeEEEEEec-----CCCCeEEE
Q 008050 391 KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG------LDALARVWDLRTGRSILALEG-----HVKPVLGI 459 (579)
Q Consensus 391 g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~------~dg~I~iwd~~~~~~~~~~~~-----~~~~I~si 459 (579)
..|++||..+.+-...-.+-.+.|+.+.|..+.++++.|. ....+..||+.+..- ..+.. -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 5699999988777666666678899999997776777764 355788899877643 23332 23678888
Q ss_pred EEcC-CCC-EEEEEe---CCCcEEEEECCCCceeEE-EeCCCCCeEEEEEeeC-------------CCeEEEEEECC---
Q 008050 460 SFSP-NGY-HLATGG---EDNTCRIWDLRKRKSLYV-IPAHSNLISQVKFEPQ-------------EGYFLVTGSYD--- 517 (579)
Q Consensus 460 ~~sp-~g~-~l~tgs---~Dg~I~iwDl~~~~~~~~-~~~~~~~V~~v~~sp~-------------~~~~l~sgs~d--- 517 (579)
.+.. ++. +.+.|. .+..|..||=.+...+.. .......|..+.+-+- +.-++++|.-.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~l~~~~ 174 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGSLNLPD 174 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEeeEecCC
Confidence 7754 333 333433 233577787555444433 2222345555554432 23355665422
Q ss_pred -C--EEEEEECCCCeEEEEec---CCCCcEEEEE
Q 008050 518 -M--TVKVWSGRDFKLVKSLS---GHEAKVTSLD 545 (579)
Q Consensus 518 -g--~I~iwd~~~~~~~~~l~---~h~~~V~~l~ 545 (579)
| ...+||-.++.+...-. +..+.|..+-
T Consensus 175 ~G~~saalydG~~w~Py~~t~~~~~~~gsi~~if 208 (281)
T PF12768_consen 175 FGNASAALYDGTSWTPYLLTSSSDGQPGSISSIF 208 (281)
T ss_pred CCcEEEEEECCCEEEEEEEEecCCCCCcceeEEE
Confidence 3 45677777666543222 2334455553
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.25 E-value=0.79 Score=47.44 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=124.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe-----eEEEecccCC-----eEEEEEecCCCEEEEEeCCCeEEEEECCCCc------
Q 008050 339 VSNHVATSSADRTARLWNTDGSL-----LNTFQGHLDR-----LARMAFHPSGKYLGTTSFDKTWRLWDVDTGV------ 402 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~~~~~-----~~~~~~h~~~-----I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~------ 402 (579)
...+++.|..||.+.+...+-+. -..+.....+ --...-|+..++.+..+.+....++|.....
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~ 205 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGD 205 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcc
Confidence 45688899999999998733211 1111110000 0111122222344445555555555543221
Q ss_pred ------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE-EE-ecCCC----CeE-EEEEcCCCCEEE
Q 008050 403 ------ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL-AL-EGHVK----PVL-GISFSPNGYHLA 469 (579)
Q Consensus 403 ------~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~-~~-~~~~~----~I~-si~~sp~g~~l~ 469 (579)
.+.........+..+-..|||+.+..-+. ..+.++++.+...-. .+ ....+ .|+ ++..-..|..++
T Consensus 206 ~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 206 RTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLL 284 (733)
T ss_pred cCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEE
Confidence 11222233455677888999998776654 678888876543211 11 11111 121 122233567788
Q ss_pred EEeCCCcEEEE-ECCCCc-----eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEE
Q 008050 470 TGGEDNTCRIW-DLRKRK-----SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTS 543 (579)
Q Consensus 470 tgs~Dg~I~iw-Dl~~~~-----~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 543 (579)
+++.||.|.-| |.+.+. .+..++.....+..+.-.. +.+-+++-+.+|++.++.....+.+-.-. --..+..
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~ 362 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQL 362 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-hhcCcce
Confidence 89999998877 555432 2222222223333332222 34556667778888888755444332222 2224667
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
+++||.+.+|++-. .|.|+++.+.+...+
T Consensus 363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 363 VAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred eeeCcccchheeec-CCceEEEEecCCCCC
Confidence 88999999998764 577999999876543
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.16 E-value=16 Score=37.64 Aligned_cols=41 Identities=22% Similarity=0.038 Sum_probs=20.9
Q ss_pred CeEEEEECCCCcEEEEEecC-C-CCeEEEEEcCCCCEEEEEeCC
Q 008050 391 KTWRLWDVDTGVELLLQEGH-S-RSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 391 g~I~lwd~~~~~~~~~~~~~-~-~~V~~l~~spdg~~l~sg~~d 432 (579)
..+.+||..+.+-...-... . ..-.+++ .-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 46888998776544322111 1 1112222 2356777777753
No 484
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.14 E-value=6.2 Score=44.20 Aligned_cols=110 Identities=8% Similarity=0.077 Sum_probs=71.8
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------C-------------ceeEEEeCCCCCeEEEEEe--eCCCeEE
Q 008050 456 VLGISFSP--NGYHLATGGEDNTCRIWDLRK-------R-------------KSLYVIPAHSNLISQVKFE--PQEGYFL 511 (579)
Q Consensus 456 I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~-------~-------------~~~~~~~~~~~~V~~v~~s--p~~~~~l 511 (579)
|+.|.... +...|+.+..||.|.+|.+.. . ++...+.. .....+++++ . ..++|
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecC-cceEE
Confidence 55555444 456888999999999996521 0 12222322 2357788887 5 47788
Q ss_pred EEEECCCEEEEEECCCC--eE-EEEecCCCCcEEEEEEcCCC-----C-EEEEEEcCCeEEEEEc
Q 008050 512 VTGSYDMTVKVWSGRDF--KL-VKSLSGHEAKVTSLDIHPDE-----Q-SIATVSHDRWIKLWST 567 (579)
Q Consensus 512 ~sgs~dg~I~iwd~~~~--~~-~~~l~~h~~~V~~l~~s~dg-----~-~L~s~s~Dg~I~iW~~ 567 (579)
|+++....|.||-.... +. ...-..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888864431 11 11111255668888886643 2 7888899999999888
No 485
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.12 E-value=13 Score=36.53 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=144.9
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF 365 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 365 (579)
...-..++-++||..-+++...|.|--.|-.+++....-.+....-..|...|+|...++-+.. .|.-.+-+...+..+
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 3445667788999999999999988888888888877666666667788888888776665443 344444333233333
Q ss_pred e----cccCCeEEEEEecCCCEEEEEeCC---------CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 366 Q----GHLDRLARMAFHPSGKYLGTTSFD---------KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 366 ~----~h~~~I~~l~~sp~~~~l~s~s~d---------g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
. ..........|.+.|++-+++... +.|++|+. .....-+.|+..|||...++.-.+
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa----------PqG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA----------PQGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc----------CCCCCCcceEECCCCcEEEEeccc
Confidence 2 234567788899999887777532 23444443 334556788999999988888788
Q ss_pred CeEEEEeCCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeCCCCCeEEEEEeeCCCe
Q 008050 433 ALARVWDLRTGRSILAL--EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS-LYVIPAHSNLISQVKFEPQEGY 509 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~--~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~-~~~~~~~~~~V~~v~~sp~~~~ 509 (579)
..|-..|..++..-..- ......-..+--++.|..-++-...+.+..||-....- -+.+...+..-.++.++.. +.
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~-gr 288 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRH-GR 288 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccC-Cc
Confidence 88888887766321111 11122234455567787777777778888888654331 1223333334455666554 44
Q ss_pred EEEEEECCCEEEEEECCCC
Q 008050 510 FLVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~ 528 (579)
.-.+-...|.|.-||-.+.
T Consensus 289 VW~sea~agai~rfdpeta 307 (353)
T COG4257 289 VWLSEADAGAIGRFDPETA 307 (353)
T ss_pred EEeeccccCceeecCcccc
Confidence 4443344566666765543
No 486
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=14 Score=36.70 Aligned_cols=153 Identities=17% Similarity=0.083 Sum_probs=93.5
Q ss_pred ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-
Q 008050 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS--RSVYGIAFHPDGSLAASCGLDALARVWDLRTGR- 444 (579)
Q Consensus 368 h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~--~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~- 444 (579)
..+-+..+.++ +++...+..+.-++++|+.+-.......... +--+++ .-.|++..++..+.-+.++|+.+..
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCcEEEEECCCCCC
Confidence 33445666776 6788888899999999998765443332211 223344 4457888888877777888887643
Q ss_pred --EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--CCCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 445 --SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP--AHSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 445 --~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~--~~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
....+......-..++.| |++-+.+..|+-+.|-|+........+. .....+.++..+++ .-+++. . +--+
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-r~y~vv-y-~egv 235 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-RAYLVV-Y-DEGV 235 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-eeEEEE-c-ccce
Confidence 233333344444566664 5677778889999999997643322221 12235777777753 334433 2 3336
Q ss_pred EEEECCCCe
Q 008050 521 KVWSGRDFK 529 (579)
Q Consensus 521 ~iwd~~~~~ 529 (579)
.+-|..+.+
T Consensus 236 livd~s~~s 244 (370)
T COG5276 236 LIVDVSGPS 244 (370)
T ss_pred EEEecCCCC
Confidence 666665544
No 487
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=17 Score=38.86 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=65.5
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 367 (579)
.|..+..++.|..++..+.+|.+..+=-.....-..+......|+|=.|.-+.. |++.+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss~--~---------------- 165 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSST--S---------------- 165 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccCC--c----------------
Confidence 467788899999999999999877665444444444444444455555543322 322221 1
Q ss_pred ccCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCcEEEEEe
Q 008050 368 HLDRLARMAFHPSG---KYLGTTSFDKTWRLWDVDTGVELLLQE 408 (579)
Q Consensus 368 h~~~I~~l~~sp~~---~~l~s~s~dg~I~lwd~~~~~~~~~~~ 408 (579)
-.+...+|||+. ..|..-+.|..|++||+.....+....
T Consensus 166 --ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 166 --LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred --eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 123567899975 588888999999999998876665543
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.93 E-value=16 Score=37.33 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=88.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCe------EEEEeCCC----CeeE-----EEEeCCCC--------CeEEEEEccCCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGV------VKIWSMPR----LQKF-----SALKGHTE--------RATDVTFSPVSN 341 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~------I~iwd~~~----~~~~-----~~l~~h~~--------~V~~l~~sp~~~ 341 (579)
.-+.++++.+.+++..+++.+.+|. ++.+++.. ...+ ..+..-.+ ..-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467899999976666777777777 66666543 1111 11111112 334788877888
Q ss_pred EEEEEeCC------CcEEEEeCCCCeeEEEe---------------cccCCeEEEEEecCCCEEEEEeCC-----C----
Q 008050 342 HVATSSAD------RTARLWNTDGSLLNTFQ---------------GHLDRLARMAFHPSGKYLGTTSFD-----K---- 391 (579)
Q Consensus 342 ~l~s~s~d------g~I~iwd~~~~~~~~~~---------------~h~~~I~~l~~sp~~~~l~s~s~d-----g---- 391 (579)
++++.=.+ ..|..++.++.....+. ..+...-+++++++|+.|+++... +
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 77776666 77888887776544431 134567899999999977765432 1
Q ss_pred -------eEEEEECCC-CcE----EEEEec-----CCCCeEEEEEcCCCCEEEE
Q 008050 392 -------TWRLWDVDT-GVE----LLLQEG-----HSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 392 -------~I~lwd~~~-~~~----~~~~~~-----~~~~V~~l~~spdg~~l~s 428 (579)
.|..||..+ +.. ...... ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244455554 211 112211 3567889999999987664
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.89 E-value=8 Score=33.68 Aligned_cols=114 Identities=7% Similarity=0.069 Sum_probs=71.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCC--------eEEEEEecCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEECC
Q 008050 417 IAFHPDGSLAASCGLDALARVWDLRTG--------RSILALEGHVKPVLGISFSP-----NGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 417 l~~spdg~~l~sg~~dg~I~iwd~~~~--------~~~~~~~~~~~~I~si~~sp-----~g~~l~tgs~Dg~I~iwDl~ 483 (579)
-.|......|++++.-|+|.|++.... ..+..+. -...|++|+-.+ +...|+.|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 355555667888889999999987633 2333443 345577776443 3456777765 569999998
Q ss_pred CCceeEEEeCCCCCeEEEEEeeC---CCeEEEEEECCCEEEEEECCCCeEEEEe
Q 008050 484 KRKSLYVIPAHSNLISQVKFEPQ---EGYFLVTGSYDMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 484 ~~~~~~~~~~~~~~V~~v~~sp~---~~~~l~sgs~dg~I~iwd~~~~~~~~~l 534 (579)
....++....+ ..|+++.+-.- ...++++ +.+..|.-||....+...+.
T Consensus 82 ~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCc-cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence 87766655444 45666666322 1334444 44667777776655555443
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=3.4 Score=43.76 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 371 RLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
.|..+..++.|..++.++.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 467788899999999999888776654
No 491
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=91.24 E-value=2.3 Score=48.57 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCC--eeEEEE---eCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRL--QKFSAL---KGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~--~~~~~l---~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
-.|+.....+.++++|...|.+.+|+.... ...... .+++..+..+.|.|++..++.+-..|...+|...+
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence 356667777899999999999999987532 222211 23444778889999999999999999999998544
No 492
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.21 E-value=0.027 Score=58.46 Aligned_cols=142 Identities=15% Similarity=0.246 Sum_probs=96.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEEeC
Q 008050 415 YGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT-GGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~t-gs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
....|.+.+.-++.++.+..+..||- .++.+.... ..+....++|..+|..++. +-..+.+.+||+.+...-..-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34567787777888888888999984 344444443 2334567888887765544 45678999999976432211111
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
....-.-+.|++ +...++.|...|.+.||+..+.+.+.....|...+++++|.+.+. .+.++.|.
T Consensus 116 g~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 116 GTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred CcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 111222267887 477788888999999999888777766766999999999998764 44444443
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.04 E-value=5.6 Score=44.26 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=53.3
Q ss_pred EEEEEecCCCEEEEEeCCC-----eEEEEECCC---CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q 008050 373 ARMAFHPSGKYLGTTSFDK-----TWRLWDVDT---GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR 444 (579)
Q Consensus 373 ~~l~~sp~~~~l~s~s~dg-----~I~lwd~~~---~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~ 444 (579)
..+.|-|+|..+++-+.|| .|.++.-+. |..- ...+....+..++|+-....++. ...+.+++|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~-lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFD-LRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcc-ccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceE
Confidence 4588999999999977665 344443321 1110 11122234555667655444433 346789999887766
Q ss_pred EEEEEecCCCCeEEEEEcCC
Q 008050 445 SILALEGHVKPVLGISFSPN 464 (579)
Q Consensus 445 ~~~~~~~~~~~I~si~~sp~ 464 (579)
-..........+.-+.|+|.
T Consensus 328 WYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred EEEEEeecCCCcceeeeccc
Confidence 55555545556778889884
No 494
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.76 E-value=33 Score=38.62 Aligned_cols=144 Identities=20% Similarity=0.207 Sum_probs=82.0
Q ss_pred EeCCCCCeEEEEEccCCCEEEEEeCCCc--EEEEe--CCCCeeEEEecccCCeEEEEEecCCCEEEEEeC------CCe-
Q 008050 324 LKGHTERATDVTFSPVSNHVATSSADRT--ARLWN--TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF------DKT- 392 (579)
Q Consensus 324 l~~h~~~V~~l~~sp~~~~l~s~s~dg~--I~iwd--~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~------dg~- 392 (579)
...+...+..+.|+|++..++..+.++. ..+|- ..+ .+..+...+....|++.++.++.... ++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3457778899999999999988874432 33333 332 44455566778888988887776211 222
Q ss_pred ------EEEEECCCC-cEE-----------EEEecCCCCeEEEEEcCCCCEEEEEeCCCe-------EEEEeCCCCeEEE
Q 008050 393 ------WRLWDVDTG-VEL-----------LLQEGHSRSVYGIAFHPDGSLAASCGLDAL-------ARVWDLRTGRSIL 447 (579)
Q Consensus 393 ------I~lwd~~~~-~~~-----------~~~~~~~~~V~~l~~spdg~~l~sg~~dg~-------I~iwd~~~~~~~~ 447 (579)
+.+|....+ ... .........+....++.++..++....+.. ..++.. ....+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCceE
Confidence 333333222 111 111123345666677776776666554332 223332 233344
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs 472 (579)
.+......+..+.|.++|+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444555588889999988555544
No 495
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=90.71 E-value=33 Score=38.59 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=134.4
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCe--EEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC------CCc--
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGV--VKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA------DRT-- 351 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~--I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~------dg~-- 351 (579)
...+...+..+.|+|+|..++..+.++. ..+|-+.... .+..+...+....|++++..++.... ++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4456778888999999999998874332 3344332221 33446667888999999988776211 232
Q ss_pred -----EEEEe-CCC-C-----------eeEEEecccCCeEEEEEecCCCEEEEEeCCCe-------EEEEECCCCcEEEE
Q 008050 352 -----ARLWN-TDG-S-----------LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT-------WRLWDVDTGVELLL 406 (579)
Q Consensus 352 -----I~iwd-~~~-~-----------~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~-------I~lwd~~~~~~~~~ 406 (579)
+.+|. ..+ . ...........+....++.++..++....+.. ..++...++... .
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 210 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE-S 210 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE-E
Confidence 33443 222 1 11122233445666677766776666554432 333333333333 3
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEe-CCC-------eEEEEeCCCCeEEEEEecCC--CCeEEEEE-cCCCCEEEEEeC-C
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCG-LDA-------LARVWDLRTGRSILALEGHV--KPVLGISF-SPNGYHLATGGE-D 474 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~-~dg-------~I~iwd~~~~~~~~~~~~~~--~~I~si~~-sp~g~~l~tgs~-D 474 (579)
.......+..+.|.++|+.++..+ ... .+.+++...++....+.... ..-..+.+ ..++..++++.. .
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecCC
Confidence 334445588888999988444433 222 23344422222222011000 00001111 122333333333 5
Q ss_pred CcEEEEECCCCc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECC---CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 475 NTCRIWDLRKRK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYD---MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 475 g~I~iwDl~~~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
|...++...... ...........+..+.+ +++.+++..+.. ..+.+|+. ++.......+...+....+.. -
T Consensus 291 g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 365 (620)
T COG1506 291 GSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAE-P 365 (620)
T ss_pred CceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCC-c
Confidence 667776655322 22233333355655555 445555544432 45777765 222222222233333333332 2
Q ss_pred CEEEEEEcCC-eEEEEEcCC
Q 008050 551 QSIATVSHDR-WIKLWSTRN 569 (579)
Q Consensus 551 ~~L~s~s~Dg-~I~iW~~~~ 569 (579)
+.+-.-+.|| +|.-|-+..
T Consensus 366 e~~~~~~~dG~~i~~~l~~P 385 (620)
T COG1506 366 EPVTYKSNDGETIHGWLYKP 385 (620)
T ss_pred eEEEEEcCCCCEEEEEEecC
Confidence 3344445555 666665543
No 496
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.70 E-value=14 Score=35.01 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=62.4
Q ss_pred CEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE---eCC--CCeEEE-
Q 008050 382 KYLGTTSFDKTWRLWDVDT--GVELLLQEGHSRSVYGIAFHPDGSLAASCGLD---A---LARVW---DLR--TGRSIL- 447 (579)
Q Consensus 382 ~~l~s~s~dg~I~lwd~~~--~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d---g---~I~iw---d~~--~~~~~~- 447 (579)
+.|+.+...+.|.+|++.+ ......+ ..-+.|..+.++..|+++++--.+ . .+++| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 5666667788899999983 2334444 344789999999999999986432 2 56664 222 111111
Q ss_pred EEec---------------------CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 008050 448 ALEG---------------------HVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKR 485 (579)
Q Consensus 448 ~~~~---------------------~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~ 485 (579)
.+-| -..++.+++..| .|+ |++|+ ++++.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence 1112 123567788877 455 45554 467999987543
No 497
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.56 E-value=39 Score=39.11 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=93.0
Q ss_pred CCCCCeEEEEEc---c----CCCEEEEEeCCCcEEEEeC----------------CCCeeEEEec---ccCCeEEEEEec
Q 008050 326 GHTERATDVTFS---P----VSNHVATSSADRTARLWNT----------------DGSLLNTFQG---HLDRLARMAFHP 379 (579)
Q Consensus 326 ~h~~~V~~l~~s---p----~~~~l~s~s~dg~I~iwd~----------------~~~~~~~~~~---h~~~I~~l~~sp 379 (579)
.-..+|..|+|. . ...+|++- ....+.|+.. +...+..+.. .......++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788899988 2 12355544 4455666661 1123333332 234678899998
Q ss_pred C-CCEEEEEeCCCeEEEEECCCC-----cEEEEEecCCC----------CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 008050 380 S-GKYLGTTSFDKTWRLWDVDTG-----VELLLQEGHSR----------SVYGIAFHPDGSLAASCGLDALARVWDLRTG 443 (579)
Q Consensus 380 ~-~~~l~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~----------~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~ 443 (579)
. ...|++....|.|.||++... ..+.....+.+ .-..+.|..+.+.|++++ ...+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCC
Confidence 4 458999999999999999221 11111111122 233677887777777665 556788999877
Q ss_pred eEEE--EEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 008050 444 RSIL--ALEGHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 444 ~~~~--~~~~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~ 484 (579)
.... ........|..+.-++. ..+++.-+ ...|...|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 6522 22234456888888886 22333332 35688888776
No 498
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=4.9 Score=41.97 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=70.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 451 GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL----YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 451 ~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~----~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
...++|.+|.||+|.+.|++--.+++|.+++....+.. .+.+..+..|...+|... .-++..+..| +.+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEEc
Confidence 35568999999999999999999999999997433222 222334455888999864 3344444444 6677543
Q ss_pred C-CeEEEEecCCCCcEEEEEEcCCCCEEEEE
Q 008050 527 D-FKLVKSLSGHEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 527 ~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~ 556 (579)
. ...++..+.|+..|.-..|.++.+.+.-+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 2 33445556677888888898887764433
No 499
>PRK05560 DNA gyrase subunit A; Validated
Probab=90.25 E-value=42 Score=39.00 Aligned_cols=251 Identities=8% Similarity=-0.002 Sum_probs=129.7
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCee-------E--EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-----
Q 008050 293 SYSHDGNLLATSSLSGVVKIWSMPRLQK-------F--SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD----- 358 (579)
Q Consensus 293 ~~spdg~~latgs~dg~I~iwd~~~~~~-------~--~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~----- 358 (579)
.+-++...+++-+.+|.|+--....... . ..++ ..+.+..+......+.|+..+..|.+......
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455678889999999999876543221 1 1111 22345555555566777777778877766521
Q ss_pred -----CCee---EEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCeEEEEEcC
Q 008050 359 -----GSLL---NTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTG-------VELLLQEGHSRSVYGIAFHP 421 (579)
Q Consensus 359 -----~~~~---~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd~~~~-------~~~~~~~~~~~~V~~l~~sp 421 (579)
|..+ ..+.....-+..+.+.. +..+++..+.+|.++-.++..- .....+. ..+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLk-e~D~lv~v~~~~ 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLD-EGDELIGVRLTD 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccC-CCCEEEEEEEeC
Confidence 1111 11222223344455542 5678999999999887765432 1112222 233444444444
Q ss_pred CCCEEEEEeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------C
Q 008050 422 DGSLAASCGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-------R 485 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-------~ 485 (579)
....++..+..|.+..+.... |.....+.....-+..+.+.+++.+++..+..|.++...+.. +
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 445677777778776665432 222233322222233344444444678888889888776432 1
Q ss_pred ceeEEE--eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCC
Q 008050 486 KSLYVI--PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 486 ~~~~~~--~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
+-+..+ ......+..+..... ...++..+.+|.+..++...-. ........|..+.+..+
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~-~~~v~i~T~~G~~lrf~~~eI~---~~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDD-DDEIMLITDSGKLIRTRVSEIS---ITGRNTQGVRLIRLDEG 792 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecC-CCeEEEEecCCeEEEEEHHHCC---ccccCCCCeeeEecCCC
Confidence 122222 222233333333322 3335555667777777654321 22222334666666443
No 500
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.95 E-value=2.9 Score=46.19 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCcccCCCCccccCCCCcccccccCCCCCCCCCCCCCCCCCCcccCCCCcCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008050 8 PVSTSLPVSSAAVPDSQALISTIEATPSQPVQPIIPPVIPPMVSAVVPPIAPISTIPPPQVPAPLAPLPVRPPVFKPPVP 87 (579)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (579)
+.|.+++.+-|+.+-.++--+ .+.|+.+-.+++|++++|+++++....+-.++.|+...|-.+.+.+.-||+.++--|
T Consensus 276 ~~S~s~ppppap~p~~~~~~a--~p~p~~~~~~pPppp~~ppv~~ln~~~s~~~p~pp~~p~l~~~~espvpp~~~~~~~ 353 (830)
T KOG1923|consen 276 PGSGSGPPPPAPLPHTAQSDA--APSPLRLRCSPPPPPPFPPVGPLNSNLSSGAPQPPGVPFLLTFPESPVPPPQRLMIP 353 (830)
T ss_pred CCCCCCCCCCCCCCCcccccC--CCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccCCCCCCCCCCcccccc
Q ss_pred CCC--------CcccccCCCCCCCCCCCCCCcccccccchhhHHHHHHHHHHHHH
Q 008050 88 AQN--------GEVRTSDSESDRDEPGPTRASAVEYEISEESRQVRERQEKAKQD 134 (579)
Q Consensus 88 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (579)
+.. .+.....+..-=..--+.+..+..|.....|.+....-+....+
T Consensus 354 a~~~a~~ik~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee 408 (830)
T KOG1923|consen 354 AELFAATIKKPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEE 408 (830)
T ss_pred hHhHHHhhcCCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHH
Done!