Query 008050
Match_columns 579
No_of_seqs 1083 out of 2464
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 16:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1E-47 3.5E-52 406.3 41.7 288 280-568 102-410 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 6.3E-46 2.2E-50 382.4 47.1 288 277-566 46-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 1.5E-45 5.3E-50 376.7 45.1 290 278-568 24-320 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 3.6E-45 1.2E-49 379.1 46.5 289 277-566 55-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 2.9E-44 9.9E-49 364.0 43.9 292 277-570 4-303 (304)
6 3iz6_a 40S ribosomal protein R 100.0 3.6E-45 1.2E-49 382.7 37.9 296 275-571 55-377 (380)
7 4ery_A WD repeat-containing pr 100.0 4.3E-43 1.5E-47 355.7 45.9 294 275-568 12-311 (312)
8 3frx_A Guanine nucleotide-bind 100.0 9E-43 3.1E-47 355.6 45.1 293 274-570 5-318 (319)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 4E-43 1.4E-47 362.2 42.7 301 275-576 4-342 (345)
10 4gqb_B Methylosome protein 50; 100.0 3E-43 1E-47 363.4 38.7 287 283-572 27-334 (344)
11 4g56_B MGC81050 protein; prote 100.0 2.7E-43 9.3E-48 365.5 37.6 289 283-573 39-347 (357)
12 2hes_X YDR267CP; beta-propelle 100.0 2.7E-42 9.3E-47 353.8 41.8 290 276-569 4-328 (330)
13 1erj_A Transcriptional repress 100.0 5.4E-42 1.8E-46 360.3 43.4 284 284-570 62-390 (393)
14 2xzm_R RACK1; ribosome, transl 100.0 8.1E-42 2.8E-46 352.0 42.3 291 275-570 10-341 (343)
15 4aow_A Guanine nucleotide-bind 100.0 5.1E-41 1.8E-45 342.8 45.7 296 273-571 25-339 (340)
16 3zwl_B Eukaryotic translation 100.0 9.5E-41 3.3E-45 343.8 43.5 298 274-574 20-351 (369)
17 1sq9_A Antiviral protein SKI8; 100.0 5.4E-41 1.9E-45 350.8 38.7 291 276-570 6-396 (397)
18 2ymu_A WD-40 repeat protein; u 100.0 2.4E-40 8.1E-45 363.8 45.5 281 280-566 297-577 (577)
19 3ei3_B DNA damage-binding prot 100.0 3.3E-40 1.1E-44 344.1 40.9 292 272-569 59-382 (383)
20 1nr0_A Actin interacting prote 100.0 2.3E-40 7.7E-45 368.1 42.0 288 281-572 13-358 (611)
21 1r5m_A SIR4-interacting protei 100.0 4.6E-40 1.6E-44 345.4 40.1 284 283-568 42-424 (425)
22 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-39 6.2E-44 327.0 42.5 293 273-576 5-303 (313)
23 1nr0_A Actin interacting prote 100.0 5.4E-40 1.9E-44 365.1 42.4 289 280-571 53-399 (611)
24 2ynn_A Coatomer subunit beta'; 100.0 1.4E-39 4.9E-44 329.5 40.4 259 319-577 4-267 (304)
25 1k8k_C P40, ARP2/3 complex 41 100.0 9.5E-40 3.3E-44 337.7 39.4 286 284-571 6-363 (372)
26 3dm0_A Maltose-binding peripla 100.0 2.3E-39 8E-44 365.2 45.7 292 275-569 371-693 (694)
27 1gxr_A ESG1, transducin-like e 100.0 6.9E-39 2.4E-43 325.9 43.7 282 282-568 47-336 (337)
28 2ymu_A WD-40 repeat protein; u 100.0 8.3E-39 2.8E-43 351.5 46.8 283 280-568 256-538 (577)
29 1vyh_C Platelet-activating fac 100.0 1.8E-39 6.2E-44 343.1 39.4 256 321-576 101-376 (410)
30 3i2n_A WD repeat-containing pr 100.0 1.2E-39 4.1E-44 334.6 35.2 294 278-572 10-356 (357)
31 3k26_A Polycomb protein EED; W 100.0 1.5E-39 5E-44 334.8 34.2 288 280-569 12-366 (366)
32 3ow8_A WD repeat-containing pr 100.0 3.1E-38 1.1E-42 322.5 39.6 249 277-526 71-320 (321)
33 4e54_B DNA damage-binding prot 100.0 4.7E-40 1.6E-44 350.1 25.3 294 276-572 109-433 (435)
34 2pm9_A Protein WEB1, protein t 100.0 1.3E-39 4.4E-44 342.3 28.2 287 287-574 13-342 (416)
35 2pm9_A Protein WEB1, protein t 100.0 4.9E-40 1.7E-44 345.5 24.4 288 283-570 64-415 (416)
36 3dwl_C Actin-related protein 2 100.0 5.6E-40 1.9E-44 341.2 24.2 280 285-567 10-377 (377)
37 4a11_B DNA excision repair pro 100.0 9.1E-38 3.1E-42 326.3 38.8 298 278-575 35-371 (408)
38 3gre_A Serine/threonine-protei 100.0 1.4E-38 4.9E-43 337.8 33.1 284 280-566 57-437 (437)
39 4gga_A P55CDC, cell division c 100.0 1.6E-36 5.4E-41 321.2 46.8 291 277-572 96-398 (420)
40 4aez_A CDC20, WD repeat-contai 100.0 1.9E-37 6.6E-42 326.1 39.5 285 284-574 89-385 (401)
41 1got_B GT-beta; complex (GTP-b 100.0 5.4E-37 1.9E-41 315.6 41.7 254 319-574 46-306 (340)
42 1gxr_A ESG1, transducin-like e 100.0 2.1E-37 7.3E-42 314.9 38.2 285 285-573 8-300 (337)
43 4gqb_B Methylosome protein 50; 100.0 1.1E-37 3.9E-42 321.6 36.0 243 285-529 81-333 (344)
44 3vl1_A 26S proteasome regulato 100.0 1.7E-38 5.9E-43 334.6 30.3 282 287-570 57-366 (420)
45 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-37 7.1E-42 354.4 41.5 296 277-573 4-306 (814)
46 3v7d_B Cell division control p 100.0 1.2E-36 4.1E-41 325.5 43.8 287 279-575 114-427 (464)
47 1yfq_A Cell cycle arrest prote 100.0 2.1E-37 7.1E-42 316.6 35.7 279 281-566 6-321 (342)
48 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-37 5E-42 316.2 32.5 296 279-575 4-343 (351)
49 3vl1_A 26S proteasome regulato 100.0 4.2E-37 1.4E-41 324.0 36.8 281 287-569 98-419 (420)
50 3dw8_B Serine/threonine-protei 100.0 2.5E-37 8.4E-42 328.3 34.2 280 284-568 26-445 (447)
51 2pm7_B Protein transport prote 100.0 1E-36 3.6E-41 307.3 36.4 250 322-571 3-287 (297)
52 1p22_A F-BOX/WD-repeat protein 100.0 8.2E-37 2.8E-41 324.8 36.6 277 282-573 129-418 (435)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.7E-36 2.3E-40 318.5 43.4 283 280-576 112-398 (445)
54 2pbi_B Guanine nucleotide-bind 100.0 5.1E-36 1.7E-40 310.4 40.9 255 319-574 55-320 (354)
55 4ery_A WD repeat-containing pr 100.0 8.6E-36 2.9E-40 301.9 41.4 258 318-576 13-275 (312)
56 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-36 8.4E-41 361.7 43.1 291 281-572 610-1037(1249)
57 4ggc_A P55CDC, cell division c 100.0 2.9E-35 1E-39 297.2 44.4 279 287-570 26-316 (318)
58 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-38 2.5E-42 340.3 26.0 284 285-570 132-518 (524)
59 3frx_A Guanine nucleotide-bind 100.0 7.3E-36 2.5E-40 304.4 39.0 246 280-528 59-318 (319)
60 4h5i_A Guanine nucleotide-exch 100.0 9.1E-37 3.1E-41 317.4 32.3 280 286-570 14-344 (365)
61 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.7E-36 1.3E-40 310.1 36.3 252 318-570 5-284 (345)
62 2pm7_B Protein transport prote 100.0 3.3E-36 1.1E-40 303.7 35.0 246 280-526 3-284 (297)
63 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.1E-35 1E-39 313.4 43.7 280 278-570 151-443 (445)
64 1pgu_A Actin interacting prote 100.0 1.1E-35 3.6E-40 328.3 40.4 287 281-573 13-332 (615)
65 2hes_X YDR267CP; beta-propelle 100.0 1.1E-35 3.7E-40 304.7 37.6 252 316-570 2-281 (330)
66 3mmy_A MRNA export factor; mRN 100.0 6.6E-36 2.3E-40 307.4 35.8 289 277-569 30-346 (368)
67 4g56_B MGC81050 protein; prote 100.0 7.3E-37 2.5E-41 317.1 28.6 278 291-574 10-306 (357)
68 1erj_A Transcriptional repress 100.0 1.6E-35 5.5E-40 310.9 38.8 243 285-527 122-389 (393)
69 3iz6_a 40S ribosomal protein R 100.0 8.9E-37 3E-41 319.0 28.4 261 312-573 50-333 (380)
70 3v7d_B Cell division control p 100.0 1.3E-34 4.4E-39 309.7 43.5 281 278-567 154-461 (464)
71 1pgu_A Actin interacting prote 100.0 2.8E-35 9.4E-40 325.0 38.3 282 279-568 56-365 (615)
72 2xzm_R RACK1; ribosome, transl 100.0 6.3E-35 2.2E-39 300.4 36.8 246 279-528 69-341 (343)
73 3bg1_A Protein SEC13 homolog; 100.0 2.7E-36 9.4E-41 307.2 26.2 247 279-526 6-292 (316)
74 3bg1_A Protein SEC13 homolog; 100.0 4.9E-36 1.7E-40 305.3 24.9 249 323-571 8-295 (316)
75 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-35 7.3E-40 310.3 30.3 282 288-571 36-344 (402)
76 3jrp_A Fusion protein of prote 100.0 9E-35 3.1E-39 300.5 33.8 252 319-570 2-288 (379)
77 2oaj_A Protein SNI1; WD40 repe 100.0 4.7E-35 1.6E-39 338.6 34.3 232 281-516 12-296 (902)
78 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-34 5.9E-39 333.8 38.6 284 284-572 56-608 (902)
79 3sfz_A APAF-1, apoptotic pepti 100.0 1E-33 3.4E-38 339.1 44.5 293 281-576 652-1081(1249)
80 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-33 4.1E-38 323.2 41.2 290 279-569 48-386 (814)
81 3jrp_A Fusion protein of prote 100.0 4.3E-34 1.5E-38 295.4 33.4 248 279-527 4-287 (379)
82 2xyi_A Probable histone-bindin 100.0 5.7E-34 2E-38 302.7 35.0 283 287-569 46-410 (430)
83 3gre_A Serine/threonine-protei 100.0 8.8E-35 3E-39 308.5 28.2 274 294-575 35-365 (437)
84 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.7E-33 9.4E-38 299.1 37.4 280 286-570 4-392 (450)
85 1r5m_A SIR4-interacting protei 100.0 2.7E-33 9.3E-38 293.7 35.6 260 309-571 26-363 (425)
86 3dm0_A Maltose-binding peripla 100.0 3.7E-33 1.3E-37 314.6 38.8 254 320-576 374-639 (694)
87 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-33 7.1E-38 290.1 33.2 244 324-569 4-274 (372)
88 1sq9_A Antiviral protein SKI8; 100.0 1.5E-33 5.2E-38 294.2 32.3 249 280-529 56-397 (397)
89 4aow_A Guanine nucleotide-bind 100.0 2.2E-32 7.6E-37 278.7 39.2 255 316-573 26-290 (340)
90 3zwl_B Eukaryotic translation 100.0 2.5E-32 8.7E-37 280.7 39.7 254 319-575 23-310 (369)
91 4aez_A CDC20, WD repeat-contai 100.0 1.1E-32 3.8E-37 289.8 36.3 249 283-535 131-388 (401)
92 3dwl_C Actin-related protein 2 100.0 7.9E-35 2.7E-39 302.3 19.4 243 324-569 7-281 (377)
93 3ei3_B DNA damage-binding prot 100.0 2.3E-33 8E-38 292.2 30.5 258 314-576 59-346 (383)
94 4gga_A P55CDC, cell division c 100.0 2.8E-32 9.7E-37 288.5 38.9 261 282-546 143-414 (420)
95 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-32 2.9E-36 270.8 38.7 250 317-576 7-262 (313)
96 3k26_A Polycomb protein EED; W 100.0 1.2E-33 4.2E-38 290.5 25.8 240 284-526 67-365 (366)
97 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-33 5.8E-38 300.6 26.7 263 283-568 12-296 (588)
98 3jro_A Fusion protein of prote 100.0 1.5E-33 5E-38 320.8 25.4 247 280-527 3-285 (753)
99 3i2n_A WD repeat-containing pr 100.0 1.2E-32 4.1E-37 282.4 29.8 247 283-530 62-356 (357)
100 3dw8_B Serine/threonine-protei 100.0 4.9E-33 1.7E-37 295.1 27.7 243 327-572 27-376 (447)
101 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-32 1.1E-36 281.9 33.1 278 282-572 15-339 (355)
102 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-33 1.2E-37 287.4 24.5 266 293-569 43-333 (343)
103 1yfq_A Cell cycle arrest prote 100.0 1.1E-32 3.7E-37 281.5 28.1 247 324-576 7-289 (342)
104 2xyi_A Probable histone-bindin 100.0 3E-32 1E-36 289.4 31.1 247 281-527 123-410 (430)
105 3jro_A Fusion protein of prote 100.0 1E-32 3.5E-37 313.8 27.9 251 322-572 3-288 (753)
106 2j04_B YDR362CP, TAU91; beta p 100.0 6.9E-33 2.4E-37 301.1 22.9 226 343-570 176-429 (524)
107 3bws_A Protein LP49; two-domai 100.0 9.5E-31 3.3E-35 276.7 38.5 278 287-569 123-432 (433)
108 1l0q_A Surface layer protein; 100.0 5.5E-30 1.9E-34 267.1 42.0 271 299-576 3-282 (391)
109 4e54_B DNA damage-binding prot 100.0 4.1E-32 1.4E-36 288.7 24.8 251 323-575 114-393 (435)
110 4gq1_A NUP37; propeller, trans 100.0 1.4E-31 4.8E-36 281.0 27.3 279 288-568 17-388 (393)
111 4a11_B DNA excision repair pro 100.0 1.5E-30 5.2E-35 271.5 33.1 283 283-570 96-406 (408)
112 4ggc_A P55CDC, cell division c 100.0 1.3E-29 4.4E-34 255.7 38.7 243 282-528 63-316 (318)
113 1p22_A F-BOX/WD-repeat protein 100.0 9.6E-31 3.3E-35 278.0 31.6 255 279-547 166-433 (435)
114 3mmy_A MRNA export factor; mRN 100.0 3.1E-30 1.1E-34 265.0 33.2 261 312-576 23-311 (368)
115 4h5i_A Guanine nucleotide-exch 100.0 9.3E-31 3.2E-35 272.0 29.4 244 280-527 67-343 (365)
116 2aq5_A Coronin-1A; WD40 repeat 100.0 6.6E-31 2.3E-35 276.0 28.5 247 281-530 76-345 (402)
117 2w18_A PALB2, fancn, partner a 100.0 5E-30 1.7E-34 258.2 31.0 272 289-567 42-355 (356)
118 1l0q_A Surface layer protein; 100.0 1.5E-28 5E-33 256.3 42.2 281 287-571 32-344 (391)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.5E-29 5.2E-34 270.0 31.8 236 329-567 5-337 (450)
120 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-29 6.1E-34 261.3 30.6 248 312-571 3-273 (355)
121 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-30 8.6E-35 276.2 23.3 257 283-558 49-350 (588)
122 3lrv_A PRE-mRNA-splicing facto 100.0 2E-29 7E-34 259.1 23.8 230 336-572 44-295 (343)
123 3bws_A Protein LP49; two-domai 100.0 6.7E-28 2.3E-32 254.8 35.0 287 285-575 59-396 (433)
124 4gq1_A NUP37; propeller, trans 100.0 5.6E-29 1.9E-33 261.2 23.5 241 284-526 87-388 (393)
125 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-28 1.2E-32 246.9 27.9 254 277-531 48-341 (351)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.8E-27 6.3E-32 251.6 29.4 278 287-570 63-388 (415)
127 1nir_A Nitrite reductase; hemo 100.0 3E-26 1E-30 250.3 35.4 277 293-573 144-462 (543)
128 2w18_A PALB2, fancn, partner a 100.0 6.9E-27 2.4E-31 235.4 26.3 243 277-525 77-355 (356)
129 1nir_A Nitrite reductase; hemo 99.9 3.1E-25 1.1E-29 242.3 36.9 286 289-577 181-522 (543)
130 2ecf_A Dipeptidyl peptidase IV 99.9 4.3E-26 1.5E-30 258.4 29.4 279 286-569 36-413 (741)
131 3vgz_A Uncharacterized protein 99.9 1.6E-24 5.5E-29 221.8 37.0 271 286-560 40-335 (353)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 2E-25 6.8E-30 235.9 30.4 263 282-551 113-410 (415)
133 3u4y_A Uncharacterized protein 99.9 2.8E-24 9.6E-29 218.5 36.0 277 293-572 4-307 (331)
134 1ri6_A Putative isomerase YBHE 99.9 3.7E-24 1.3E-28 217.7 31.6 265 300-568 7-307 (343)
135 1pby_B Quinohemoprotein amine 99.9 6.2E-24 2.1E-28 215.5 32.2 271 299-577 2-318 (337)
136 1xfd_A DIP, dipeptidyl aminope 99.9 5.1E-25 1.8E-29 248.7 25.0 281 288-570 18-394 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 5.3E-24 1.8E-28 239.9 32.1 280 286-571 81-437 (706)
138 2ojh_A Uncharacterized protein 99.9 2.3E-24 7.7E-29 213.7 24.4 253 303-560 17-293 (297)
139 2ecf_A Dipeptidyl peptidase IV 99.9 4.3E-24 1.5E-28 241.9 28.1 278 287-569 109-459 (741)
140 1k32_A Tricorn protease; prote 99.9 2.7E-23 9.2E-28 244.6 32.3 277 285-571 294-639 (1045)
141 1k32_A Tricorn protease; prote 99.9 3.6E-23 1.2E-27 243.5 30.5 278 283-569 200-502 (1045)
142 1ri6_A Putative isomerase YBHE 99.9 2.6E-22 9.1E-27 204.0 31.4 263 284-550 35-334 (343)
143 3o4h_A Acylamino-acid-releasin 99.9 3.1E-23 1.1E-27 228.5 26.1 266 287-568 22-314 (582)
144 2z3z_A Dipeptidyl aminopeptida 99.9 4E-23 1.4E-27 232.7 27.1 276 288-571 27-393 (706)
145 3hfq_A Uncharacterized protein 99.9 1.7E-21 5.7E-26 199.8 34.8 261 307-568 15-316 (347)
146 3vgz_A Uncharacterized protein 99.9 1.5E-21 5E-26 199.7 33.2 247 327-576 39-310 (353)
147 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-21 4.3E-26 199.7 29.8 270 291-577 4-333 (349)
148 2ojh_A Uncharacterized protein 99.9 3.8E-22 1.3E-26 197.6 24.6 232 283-517 38-292 (297)
149 3u4y_A Uncharacterized protein 99.9 3E-21 1E-25 196.1 31.6 244 285-530 39-307 (331)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 2.1E-21 7E-26 206.3 29.0 283 285-569 35-405 (434)
151 1xfd_A DIP, dipeptidyl aminope 99.9 8.7E-22 3E-26 222.2 25.7 268 288-557 62-428 (723)
152 3scy_A Hypothetical bacterial 99.9 4.6E-20 1.6E-24 190.2 33.9 267 298-568 13-336 (361)
153 1z68_A Fibroblast activation p 99.9 3.3E-22 1.1E-26 225.7 18.9 272 291-569 20-391 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 2.7E-21 9.1E-26 205.4 24.2 251 308-568 23-332 (434)
155 1pby_B Quinohemoprotein amine 99.9 1.8E-20 6.2E-25 189.9 28.7 242 288-537 35-320 (337)
156 3hfq_A Uncharacterized protein 99.9 7E-20 2.4E-24 187.6 31.3 245 285-531 38-323 (347)
157 3pe7_A Oligogalacturonate lyas 99.9 3.2E-20 1.1E-24 192.8 27.5 275 292-569 41-382 (388)
158 3scy_A Hypothetical bacterial 99.9 3.1E-19 1.1E-23 183.9 33.5 259 285-547 48-360 (361)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 3E-19 1E-23 184.9 31.8 269 300-570 4-342 (365)
160 3o4h_A Acylamino-acid-releasin 99.8 3.8E-20 1.3E-24 203.8 22.0 231 328-567 21-274 (582)
161 1z68_A Fibroblast activation p 99.8 1.4E-20 4.8E-25 212.4 18.8 281 288-572 61-446 (719)
162 3azo_A Aminopeptidase; POP fam 99.8 4.5E-19 1.5E-23 198.1 28.2 286 283-571 20-371 (662)
163 3c5m_A Oligogalacturonate lyas 99.8 1.3E-19 4.5E-24 188.2 20.1 275 288-568 37-381 (396)
164 4a5s_A Dipeptidyl peptidase 4 99.8 6.8E-19 2.3E-23 199.6 27.0 267 287-558 17-382 (740)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.8E-18 2E-22 175.2 29.0 243 284-528 37-342 (365)
166 2gop_A Trilobed protease; beta 99.8 1.2E-17 4E-22 170.7 30.5 258 287-568 15-330 (347)
167 3fvz_A Peptidyl-glycine alpha- 99.8 1.4E-17 4.6E-22 170.0 30.5 238 286-526 23-321 (329)
168 1q7f_A NHL, brain tumor CG1071 99.8 5.2E-17 1.8E-21 161.5 33.5 239 326-570 27-281 (286)
169 2dg1_A DRP35, lactonase; beta 99.8 2.7E-17 9.4E-22 167.2 31.3 275 287-568 6-315 (333)
170 1q7f_A NHL, brain tumor CG1071 99.8 8.2E-17 2.8E-21 160.1 34.1 240 283-528 26-281 (286)
171 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-17 9.7E-22 167.2 29.8 242 288-537 44-335 (349)
172 3fvz_A Peptidyl-glycine alpha- 99.8 1.4E-16 4.7E-21 162.5 34.4 241 328-571 23-324 (329)
173 2oiz_A Aromatic amine dehydrog 99.8 2.5E-17 8.6E-22 170.4 28.8 271 297-575 14-342 (361)
174 3azo_A Aminopeptidase; POP fam 99.8 7.8E-18 2.7E-22 188.0 25.2 245 291-538 81-380 (662)
175 2z2n_A Virginiamycin B lyase; 99.8 3.8E-15 1.3E-19 148.1 41.3 279 284-571 12-297 (299)
176 3pe7_A Oligogalacturonate lyas 99.8 3.7E-17 1.2E-21 169.6 26.1 258 312-571 14-331 (388)
177 3e5z_A Putative gluconolactona 99.8 3.1E-16 1.1E-20 156.9 30.8 248 318-574 17-291 (296)
178 2xdw_A Prolyl endopeptidase; a 99.8 4.2E-16 1.4E-20 175.8 34.9 274 296-571 81-416 (710)
179 2oiz_A Aromatic amine dehydrog 99.8 2.4E-16 8.2E-21 163.0 29.9 255 291-551 54-360 (361)
180 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-16 3.7E-21 181.4 28.8 278 290-571 65-451 (740)
181 3c5m_A Oligogalacturonate lyas 99.7 7.4E-17 2.5E-21 167.3 20.4 256 311-571 13-331 (396)
182 2xdw_A Prolyl endopeptidase; a 99.7 1.6E-15 5.5E-20 171.0 30.7 244 284-529 122-416 (710)
183 1qks_A Cytochrome CD1 nitrite 99.7 2.1E-14 7.2E-19 156.7 38.5 272 296-570 165-478 (567)
184 2bkl_A Prolyl endopeptidase; m 99.7 3.7E-16 1.3E-20 175.8 25.3 271 295-571 76-399 (695)
185 3e5z_A Putative gluconolactona 99.7 4.9E-15 1.7E-19 148.1 30.7 236 285-530 26-289 (296)
186 1rwi_B Serine/threonine-protei 99.7 1.5E-15 5E-20 149.3 25.8 239 288-528 25-265 (270)
187 2qc5_A Streptogramin B lactona 99.7 9.4E-14 3.2E-18 138.0 38.9 275 285-568 18-299 (300)
188 2gop_A Trilobed protease; beta 99.7 1.6E-15 5.5E-20 154.8 26.5 233 287-539 59-341 (347)
189 1rwi_B Serine/threonine-protei 99.7 1.4E-15 4.9E-20 149.3 25.1 242 330-573 25-268 (270)
190 3no2_A Uncharacterized protein 99.7 6.2E-15 2.1E-19 146.5 29.0 234 297-536 4-261 (276)
191 1qks_A Cytochrome CD1 nitrite 99.7 6.4E-14 2.2E-18 152.9 38.9 287 288-577 198-546 (567)
192 2dg1_A DRP35, lactonase; beta 99.7 4.1E-14 1.4E-18 143.6 35.1 232 282-516 40-300 (333)
193 3no2_A Uncharacterized protein 99.7 1.1E-14 3.7E-19 144.7 27.8 212 339-557 4-231 (276)
194 3dsm_A Uncharacterized protein 99.7 8.1E-15 2.8E-19 149.4 26.8 263 306-577 15-309 (328)
195 1yr2_A Prolyl oligopeptidase; 99.7 6.5E-15 2.2E-19 166.9 27.2 273 295-571 115-443 (741)
196 3dsm_A Uncharacterized protein 99.7 3.5E-14 1.2E-18 144.6 29.2 250 288-546 45-319 (328)
197 2mad_H Methylamine dehydrogena 99.7 8.5E-13 2.9E-17 136.9 38.6 273 294-575 28-356 (373)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-13 3.8E-18 138.8 30.0 242 325-571 14-301 (314)
199 2bkl_A Prolyl endopeptidase; m 99.6 3.1E-15 1.1E-19 168.2 20.2 242 284-530 118-400 (695)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.7E-13 5.8E-18 137.5 30.6 238 286-527 17-299 (314)
201 3sjl_D Methylamine dehydrogena 99.6 2.2E-13 7.5E-18 140.3 29.9 278 294-578 40-372 (386)
202 2z2n_A Virginiamycin B lyase; 99.6 1.5E-12 5.2E-17 129.1 35.4 236 326-567 12-253 (299)
203 3hrp_A Uncharacterized protein 99.6 1.8E-12 6.3E-17 136.1 32.0 234 329-567 131-408 (409)
204 1yr2_A Prolyl oligopeptidase; 99.6 3.9E-13 1.3E-17 152.3 27.4 242 285-530 161-444 (741)
205 3g4e_A Regucalcin; six bladed 99.6 6.3E-12 2.2E-16 125.8 31.8 227 326-558 10-261 (297)
206 3g4e_A Regucalcin; six bladed 99.6 7.3E-12 2.5E-16 125.4 32.0 226 286-517 12-263 (297)
207 3hrp_A Uncharacterized protein 99.6 3.8E-12 1.3E-16 133.6 31.1 233 287-525 131-408 (409)
208 3c75_H MADH, methylamine dehyd 99.6 1.2E-12 4E-17 137.2 26.9 274 296-576 82-409 (426)
209 2qc5_A Streptogramin B lactona 99.5 3.3E-11 1.1E-15 119.5 35.3 235 327-567 18-258 (300)
210 3dr2_A Exported gluconolactona 99.5 6.9E-12 2.4E-16 126.0 27.2 236 320-566 36-303 (305)
211 2mad_H Methylamine dehydrogena 99.5 1.5E-10 5.1E-15 119.9 37.8 238 291-534 70-357 (373)
212 2ghs_A AGR_C_1268P; regucalcin 99.5 2.6E-11 8.9E-16 123.2 31.4 222 330-559 50-292 (326)
213 2ghs_A AGR_C_1268P; regucalcin 99.5 5.5E-11 1.9E-15 120.8 32.3 221 289-517 51-293 (326)
214 3q7m_A Lipoprotein YFGL, BAMB; 99.5 9.3E-11 3.2E-15 121.1 33.8 270 297-578 52-346 (376)
215 3iuj_A Prolyl endopeptidase; h 99.5 7.3E-12 2.5E-16 140.7 26.6 240 327-571 127-407 (693)
216 3dr2_A Exported gluconolactona 99.5 2.2E-11 7.4E-16 122.3 27.4 228 286-524 44-303 (305)
217 3sjl_D Methylamine dehydrogena 99.5 1.6E-11 5.5E-16 126.4 25.9 253 291-549 82-384 (386)
218 1yiq_A Quinohemoprotein alcoho 99.4 1.6E-11 5.3E-16 137.6 27.4 275 298-578 70-514 (689)
219 1xip_A Nucleoporin NUP159; bet 99.4 2.1E-12 7.1E-17 133.5 18.2 173 371-557 39-232 (388)
220 1xip_A Nucleoporin NUP159; bet 99.4 3E-12 1E-16 132.3 18.7 171 288-472 39-232 (388)
221 1kb0_A Quinohemoprotein alcoho 99.4 1.8E-11 6.3E-16 136.7 26.4 276 298-578 77-516 (677)
222 3iuj_A Prolyl endopeptidase; h 99.4 9E-12 3.1E-16 139.9 23.6 241 284-530 126-408 (693)
223 2qe8_A Uncharacterized protein 99.4 6.6E-12 2.2E-16 128.5 19.4 258 287-560 17-312 (343)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4E-10 1.4E-14 116.4 32.4 257 297-566 102-375 (376)
225 3hxj_A Pyrrolo-quinoline quino 99.4 1.4E-11 5E-16 124.2 19.8 266 288-571 61-326 (330)
226 1mda_H Methylamine dehydrogena 99.4 1.7E-11 5.7E-16 126.3 18.7 255 309-578 47-355 (368)
227 1kb0_A Quinohemoprotein alcoho 99.3 2.8E-10 9.7E-15 127.1 29.1 269 297-569 127-567 (677)
228 3hxj_A Pyrrolo-quinoline quino 99.3 1.3E-11 4.3E-16 124.6 15.2 263 292-573 25-287 (330)
229 3c75_H MADH, methylamine dehyd 99.3 1.5E-10 5E-15 121.2 23.4 239 291-534 122-409 (426)
230 1yiq_A Quinohemoprotein alcoho 99.3 5.6E-10 1.9E-14 124.9 29.3 256 297-554 120-533 (689)
231 1kv9_A Type II quinohemoprotei 99.3 7.1E-10 2.4E-14 123.7 26.7 276 298-578 66-497 (668)
232 2hz6_A Endoplasmic reticulum t 99.3 2.1E-12 7.2E-17 133.7 5.2 257 297-568 8-278 (369)
233 1npe_A Nidogen, entactin; glyc 99.3 2.1E-08 7.1E-13 98.2 33.7 249 299-551 2-263 (267)
234 1mda_H Methylamine dehydrogena 99.2 1E-10 3.5E-15 120.4 16.7 244 291-547 69-365 (368)
235 2hz6_A Endoplasmic reticulum t 99.2 4.4E-12 1.5E-16 131.3 3.6 203 339-551 8-216 (369)
236 1npe_A Nidogen, entactin; glyc 99.2 4E-08 1.4E-12 96.2 30.4 231 341-576 2-245 (267)
237 1fwx_A Nitrous oxide reductase 99.2 3.9E-09 1.3E-13 113.2 23.6 267 301-571 18-433 (595)
238 1mzw_B U4/U6 snRNP 60KDA prote 99.2 1.7E-11 5.9E-16 75.3 3.2 31 152-182 1-31 (31)
239 2ece_A 462AA long hypothetical 99.2 6.1E-08 2.1E-12 100.6 31.7 219 338-557 93-399 (462)
240 2dk4_A PRE-mRNA-splicing facto 99.1 2.5E-11 8.6E-16 90.9 4.5 39 145-183 24-62 (76)
241 2ad6_A Methanol dehydrogenase 99.1 2.5E-08 8.4E-13 109.1 28.1 275 298-578 62-503 (571)
242 1w6s_A Methanol dehydrogenase 99.1 4.2E-08 1.4E-12 107.4 29.4 277 298-578 62-512 (599)
243 2qe8_A Uncharacterized protein 99.1 3.4E-09 1.2E-13 108.2 19.0 225 284-523 64-317 (343)
244 2fp8_A Strictosidine synthase; 99.1 4.7E-08 1.6E-12 98.6 26.5 238 329-571 19-315 (322)
245 2fp8_A Strictosidine synthase; 99.1 2.6E-07 8.7E-12 93.1 31.3 234 287-526 19-312 (322)
246 4a2l_A BT_4663, two-component 99.0 7.2E-07 2.4E-11 101.5 38.0 275 286-570 214-527 (795)
247 1flg_A Protein (quinoprotein e 99.0 2.9E-07 1E-11 100.7 32.6 277 298-578 68-525 (582)
248 1kv9_A Type II quinohemoprotei 99.0 1.9E-07 6.6E-12 104.0 31.7 258 298-557 117-520 (668)
249 4a2l_A BT_4663, two-component 99.0 8.8E-07 3E-11 100.8 37.8 272 286-570 262-572 (795)
250 2iwa_A Glutamine cyclotransfer 99.0 1.1E-07 3.9E-12 92.6 25.0 204 319-528 10-238 (266)
251 2ece_A 462AA long hypothetical 99.0 2.8E-07 9.4E-12 95.7 28.2 218 296-515 93-399 (462)
252 2iwa_A Glutamine cyclotransfer 99.0 1.1E-07 3.9E-12 92.6 23.7 195 372-571 23-239 (266)
253 1w6s_A Methanol dehydrogenase 98.9 5E-07 1.7E-11 98.9 30.2 257 292-552 111-529 (599)
254 2p4o_A Hypothetical protein; p 98.9 1.2E-06 4.1E-11 87.6 30.6 234 319-559 23-278 (306)
255 2ad6_A Methanol dehydrogenase 98.9 7.6E-07 2.6E-11 97.2 30.0 254 298-555 115-523 (571)
256 3v9f_A Two-component system se 98.9 2.3E-06 8E-11 97.1 34.8 277 286-571 257-570 (781)
257 3v64_C Agrin; beta propeller, 98.9 3E-06 1E-10 86.6 31.8 241 331-574 36-280 (349)
258 1flg_A Protein (quinoprotein e 98.9 1.3E-06 4.6E-11 95.4 30.9 252 298-552 117-542 (582)
259 3nol_A Glutamine cyclotransfer 98.9 4.7E-07 1.6E-11 87.4 24.0 189 320-515 33-244 (262)
260 3nol_A Glutamine cyclotransfer 98.9 4.8E-07 1.7E-11 87.3 23.9 179 372-558 45-244 (262)
261 3v64_C Agrin; beta propeller, 98.8 9.1E-06 3.1E-10 82.9 33.7 243 288-535 35-283 (349)
262 1ijq_A LDL receptor, low-densi 98.8 1.5E-05 5.2E-10 80.0 34.8 222 350-573 10-242 (316)
263 3v65_B Low-density lipoprotein 98.8 3.1E-06 1.1E-10 87.7 30.3 239 333-574 81-323 (386)
264 1fwx_A Nitrous oxide reductase 98.8 9.3E-08 3.2E-12 102.6 18.1 230 296-529 99-433 (595)
265 3v9f_A Two-component system se 98.8 8.1E-06 2.8E-10 92.6 34.7 274 287-570 211-525 (781)
266 3mbr_X Glutamine cyclotransfer 98.8 3E-06 1E-10 81.1 25.6 181 371-558 22-223 (243)
267 1ijq_A LDL receptor, low-densi 98.8 5.2E-05 1.8E-09 76.1 36.2 231 300-534 3-245 (316)
268 3p5b_L Low density lipoprotein 98.7 3.8E-05 1.3E-09 79.8 34.9 243 300-546 85-339 (400)
269 3v65_B Low-density lipoprotein 98.7 1.4E-05 4.7E-10 82.8 31.4 253 289-546 79-337 (386)
270 3p5b_L Low density lipoprotein 98.7 2.2E-05 7.6E-10 81.6 32.9 232 342-575 85-326 (400)
271 1k3i_A Galactose oxidase precu 98.7 3.2E-07 1.1E-11 102.1 20.0 267 291-558 190-530 (656)
272 3mbr_X Glutamine cyclotransfer 98.7 4.6E-06 1.6E-10 79.7 25.1 188 319-515 10-223 (243)
273 3nok_A Glutaminyl cyclase; bet 98.7 1.5E-06 5.1E-11 83.9 21.7 177 372-557 57-253 (268)
274 3tc9_A Hypothetical hydrolase; 98.7 9.9E-06 3.4E-10 85.2 29.6 235 288-525 138-428 (430)
275 3nok_A Glutaminyl cyclase; bet 98.7 4E-06 1.4E-10 80.9 23.8 188 320-515 45-254 (268)
276 3tc9_A Hypothetical hydrolase; 98.7 6.3E-06 2.2E-10 86.6 27.6 237 330-568 138-429 (430)
277 2p4o_A Hypothetical protein; p 98.7 8.3E-06 2.8E-10 81.4 27.2 223 287-515 32-277 (306)
278 2xe4_A Oligopeptidase B; hydro 98.7 5.2E-06 1.8E-10 93.8 27.6 239 330-571 175-460 (751)
279 2xbg_A YCF48-like protein; pho 98.7 5.2E-05 1.8E-09 76.5 32.3 270 285-567 34-320 (327)
280 3sov_A LRP-6, low-density lipo 98.7 2.5E-05 8.4E-10 78.6 29.4 233 300-535 6-246 (318)
281 3qqz_A Putative uncharacterize 98.6 3E-05 1E-09 75.0 28.1 200 365-567 22-251 (255)
282 4hw6_A Hypothetical protein, I 98.6 1.8E-05 6.3E-10 83.1 29.0 234 330-568 140-432 (433)
283 2xe4_A Oligopeptidase B; hydro 98.6 2.7E-06 9.1E-11 96.1 23.8 242 284-529 170-460 (751)
284 3sov_A LRP-6, low-density lipo 98.6 3.8E-05 1.3E-09 77.2 29.2 226 349-575 12-244 (318)
285 4hw6_A Hypothetical protein, I 98.6 3.5E-05 1.2E-09 81.0 29.8 234 288-526 140-432 (433)
286 3m0c_C LDL receptor, low-densi 98.5 0.00011 3.8E-09 82.7 33.0 225 307-534 403-639 (791)
287 3m0c_C LDL receptor, low-densi 98.5 0.00019 6.3E-09 81.0 32.8 225 347-573 401-636 (791)
288 3qqz_A Putative uncharacterize 98.5 9.7E-05 3.3E-09 71.4 26.4 200 323-525 21-251 (255)
289 1k3i_A Galactose oxidase precu 98.5 2E-06 6.7E-11 95.7 16.5 238 333-570 190-498 (656)
290 3kya_A Putative phosphatase; s 98.4 0.00015 5.1E-09 76.8 29.0 242 288-532 140-480 (496)
291 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0051 1.7E-07 67.6 42.0 155 287-443 80-238 (628)
292 3kya_A Putative phosphatase; s 98.3 0.00024 8.2E-09 75.2 27.5 239 331-572 141-478 (496)
293 3s94_A LRP-6, low-density lipo 98.3 0.0012 3.9E-08 72.6 33.6 281 287-568 84-466 (619)
294 3s94_A LRP-6, low-density lipo 98.3 0.0016 5.5E-08 71.5 34.5 202 286-488 39-247 (619)
295 2xbg_A YCF48-like protein; pho 98.3 0.00066 2.3E-08 68.2 29.0 229 286-525 79-320 (327)
296 3amr_A 3-phytase; beta-propell 98.2 0.00039 1.3E-08 69.8 24.6 193 339-535 39-272 (355)
297 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0038 1.3E-07 68.5 34.1 226 300-530 8-240 (628)
298 3amr_A 3-phytase; beta-propell 98.2 0.00067 2.3E-08 68.1 25.4 192 297-492 39-272 (355)
299 2p9w_A MAL S 1 allergenic prot 98.1 0.00079 2.7E-08 67.0 24.8 205 325-531 9-269 (334)
300 1n7d_A LDL receptor, low-densi 98.1 7.4E-06 2.5E-10 91.5 10.6 226 348-574 384-619 (699)
301 1n7d_A LDL receptor, low-densi 98.1 7.9E-06 2.7E-10 91.3 10.8 238 307-547 385-634 (699)
302 2ism_A Putative oxidoreductase 98.1 0.0025 8.4E-08 64.8 28.2 222 328-557 30-333 (352)
303 3a9g_A Putative uncharacterize 98.1 0.0079 2.7E-07 61.1 31.9 227 328-557 28-330 (354)
304 3ei3_A DNA damage-binding prot 98.1 0.011 3.7E-07 69.5 36.6 279 286-571 553-915 (1158)
305 3ott_A Two-component system se 98.0 0.031 1.1E-06 62.7 37.0 268 286-568 62-351 (758)
306 2ism_A Putative oxidoreductase 98.0 0.0019 6.3E-08 65.7 24.5 217 288-514 32-332 (352)
307 2p9w_A MAL S 1 allergenic prot 97.9 0.0024 8.1E-08 63.6 23.7 198 368-567 11-263 (334)
308 2xzh_A Clathrin heavy chain 1; 97.9 0.021 7E-07 56.4 32.5 231 291-527 71-332 (365)
309 2vpj_A Kelch-like protein 12; 97.9 0.0014 4.6E-08 64.7 22.1 225 297-529 14-280 (301)
310 2vpj_A Kelch-like protein 12; 97.9 0.00095 3.2E-08 65.8 20.6 213 350-570 31-279 (301)
311 2xzh_A Clathrin heavy chain 1; 97.9 0.023 8E-07 56.1 33.9 256 308-571 49-334 (365)
312 2g8s_A Glucose/sorbosone dehyd 97.9 0.016 5.4E-07 58.8 29.2 235 329-567 18-350 (353)
313 3das_A Putative oxidoreductase 97.8 0.039 1.3E-06 55.6 31.8 230 324-557 27-326 (347)
314 1bpo_A Protein (clathrin); cla 97.8 0.046 1.6E-06 56.1 32.2 230 291-526 70-330 (494)
315 3a9g_A Putative uncharacterize 97.8 0.013 4.4E-07 59.5 27.0 224 287-514 29-329 (354)
316 2xn4_A Kelch-like protein 2; s 97.8 0.0023 8E-08 63.1 21.0 221 341-570 17-277 (302)
317 2xn4_A Kelch-like protein 2; s 97.8 0.0031 1E-07 62.2 21.5 226 298-531 16-280 (302)
318 1bpo_A Protein (clathrin); cla 97.7 0.056 1.9E-06 55.5 35.7 257 307-571 47-333 (494)
319 3ii7_A Kelch-like protein 7; p 97.7 0.0039 1.3E-07 61.5 21.6 221 341-570 13-273 (306)
320 3ii7_A Kelch-like protein 7; p 97.7 0.0057 1.9E-07 60.4 22.6 223 299-529 13-274 (306)
321 1cru_A Protein (soluble quinop 97.7 0.036 1.2E-06 58.2 29.7 104 328-431 26-163 (454)
322 3das_A Putative oxidoreductase 97.7 0.031 1.1E-06 56.3 27.5 224 287-513 32-324 (347)
323 4asc_A Kelch repeat and BTB do 97.6 0.006 2E-07 60.5 21.2 219 343-570 8-278 (315)
324 3ott_A Two-component system se 97.6 0.16 5.6E-06 56.8 35.6 272 288-570 192-503 (758)
325 3s25_A Hypothetical 7-bladed b 97.5 0.077 2.6E-06 52.4 27.9 248 294-569 21-293 (302)
326 3ei3_A DNA damage-binding prot 97.5 0.19 6.6E-06 58.9 35.5 269 290-568 330-635 (1158)
327 3sre_A PON1, serum paraoxonase 97.5 0.0091 3.1E-07 60.4 21.1 200 348-552 81-327 (355)
328 4asc_A Kelch repeat and BTB do 97.5 0.018 6.3E-07 56.9 22.9 224 300-531 7-281 (315)
329 2g8s_A Glucose/sorbosone dehyd 97.4 0.041 1.4E-06 55.7 24.0 229 288-521 19-348 (353)
330 1zgk_A Kelch-like ECH-associat 97.4 0.0072 2.5E-07 59.8 18.0 222 339-570 24-288 (308)
331 1zgk_A Kelch-like ECH-associat 97.3 0.017 5.8E-07 57.0 20.3 224 295-529 22-289 (308)
332 2woz_A Kelch repeat and BTB do 97.3 0.016 5.6E-07 57.4 19.9 214 351-570 25-288 (318)
333 3sre_A PON1, serum paraoxonase 97.3 0.03 1E-06 56.6 21.9 185 371-559 51-287 (355)
334 2woz_A Kelch repeat and BTB do 97.2 0.058 2E-06 53.3 22.4 224 300-532 18-292 (318)
335 3s25_A Hypothetical 7-bladed b 97.2 0.11 3.9E-06 51.2 24.0 175 292-484 58-255 (302)
336 2be1_A Serine/threonine-protei 97.1 0.021 7E-07 57.4 17.7 189 298-489 10-236 (339)
337 2uvk_A YJHT; unknown function, 97.0 0.027 9.2E-07 56.7 18.2 231 297-533 19-348 (357)
338 1xi4_A Clathrin heavy chain; a 97.0 0.062 2.1E-06 63.0 22.3 257 307-571 47-333 (1630)
339 2uvk_A YJHT; unknown function, 96.9 0.018 6.3E-07 58.0 16.2 229 339-574 19-347 (357)
340 3pbp_A Nucleoporin NUP82; beta 96.9 0.056 1.9E-06 55.4 19.2 142 421-565 30-208 (452)
341 2be1_A Serine/threonine-protei 96.9 0.061 2.1E-06 53.9 19.3 188 341-532 11-236 (339)
342 3pbp_A Nucleoporin NUP82; beta 96.8 0.15 5.1E-06 52.3 20.8 129 350-480 41-208 (452)
343 3b7f_A Glycosyl hydrolase, BNR 96.7 0.59 2E-05 47.5 25.9 260 299-563 23-366 (394)
344 3sbq_A Nitrous-oxide reductase 96.7 0.66 2.2E-05 49.1 25.6 254 300-557 72-453 (638)
345 1xi4_A Clathrin heavy chain; a 96.4 0.084 2.9E-06 61.9 18.2 230 292-527 71-331 (1630)
346 1tl2_A L10, protein (tachylect 96.3 0.21 7.2E-06 46.5 17.0 169 299-477 5-203 (236)
347 3b7f_A Glycosyl hydrolase, BNR 96.3 0.99 3.4E-05 45.8 24.1 257 286-547 54-391 (394)
348 2zwa_A Leucine carboxyl methyl 96.3 0.13 4.5E-06 57.0 18.5 193 338-531 396-639 (695)
349 2zwa_A Leucine carboxyl methyl 95.8 0.18 6.3E-06 55.9 17.1 190 380-570 397-636 (695)
350 3qhy_B Beta-lactamase inhibito 95.8 0.15 5.3E-06 49.6 14.7 225 330-573 25-250 (282)
351 1tl2_A L10, protein (tachylect 95.8 0.058 2E-06 50.2 10.7 140 288-435 42-203 (236)
352 1cru_A Protein (soluble quinop 95.6 1.9 6.4E-05 45.0 22.8 108 365-472 22-162 (454)
353 3qhy_B Beta-lactamase inhibito 95.1 0.36 1.2E-05 47.0 14.3 239 288-549 25-264 (282)
354 3sbq_A Nitrous-oxide reductase 95.0 2.6 8.9E-05 44.6 20.9 187 380-569 141-408 (638)
355 4hvt_A Ritya.17583.B, post-pro 94.2 4 0.00014 45.1 21.7 232 290-526 132-429 (711)
356 1suu_A DNA gyrase subunit A; t 94.1 4.8 0.00016 39.5 24.7 185 296-483 6-230 (312)
357 1suu_A DNA gyrase subunit A; t 93.7 5.8 0.0002 38.9 24.3 226 338-567 6-281 (312)
358 3no0_A DNA gyrase subunit A; D 93.2 6.3 0.00021 37.9 19.9 194 286-483 23-245 (276)
359 2wg3_C Hedgehog-interacting pr 92.5 11 0.00039 39.1 30.0 225 330-557 15-354 (463)
360 3l6v_A GYRA, DNA gyrase subuni 92.0 11 0.00038 37.9 22.8 186 295-483 4-264 (370)
361 1wp5_A Topoisomerase IV; broke 91.5 11 0.00039 37.0 22.3 230 338-569 3-277 (323)
362 3uc1_A DNA gyrase subunit A; D 90.6 14 0.00048 36.4 21.5 259 299-560 4-321 (327)
363 3uc1_A DNA gyrase subunit A; D 90.4 15 0.0005 36.3 20.1 225 341-568 4-278 (327)
364 2wg3_C Hedgehog-interacting pr 90.2 19 0.00066 37.3 28.0 224 288-515 15-354 (463)
365 1zi0_A DNA gyrase subunit A; b 89.6 16 0.00055 35.6 24.8 226 297-527 2-277 (307)
366 1zi0_A DNA gyrase subunit A; b 89.4 16 0.00056 35.5 23.3 227 339-569 2-277 (307)
367 3l6v_A GYRA, DNA gyrase subuni 89.0 20 0.00069 35.9 24.1 231 337-568 4-315 (370)
368 3q6k_A 43.2 kDa salivary prote 88.9 21 0.00072 35.9 23.0 165 392-557 124-342 (381)
369 1sqj_A OXG-RCBH, oligoxylogluc 87.3 41 0.0014 37.5 27.9 146 285-432 13-190 (789)
370 3kci_A Probable E3 ubiquitin-p 84.2 36 0.0012 34.1 29.6 234 331-573 55-349 (389)
371 4gq2_M Nucleoporin NUP120; bet 82.7 35 0.0012 38.9 17.9 39 540-578 237-275 (950)
372 3no0_A DNA gyrase subunit A; D 81.7 37 0.0013 32.4 23.9 194 328-526 23-245 (276)
373 1wp5_A Topoisomerase IV; broke 80.0 47 0.0016 32.5 22.8 186 296-484 3-225 (323)
374 3kci_A Probable E3 ubiquitin-p 79.2 54 0.0019 32.7 28.2 222 299-527 63-345 (389)
375 1sqj_A OXG-RCBH, oligoxylogluc 78.6 87 0.003 34.8 27.8 146 328-474 14-190 (789)
376 4hvt_A Ritya.17583.B, post-pro 76.9 92 0.0031 34.1 24.3 232 332-568 132-429 (711)
377 3mvd_K Regulator of chromosome 75.3 72 0.0025 32.1 37.7 232 330-573 76-378 (423)
378 4gq2_M Nucleoporin NUP120; bet 67.5 1.7E+02 0.0058 33.2 25.3 38 455-492 237-274 (950)
379 4a9v_A PHOX; hydrolase, beta-p 66.5 1.2E+02 0.0041 32.2 15.2 61 412-472 476-549 (592)
380 4fhn_B Nucleoporin NUP120; pro 66.2 24 0.00082 41.2 11.0 38 541-578 240-277 (1139)
381 1zvt_A Topoisomerase IV subuni 59.8 1E+02 0.0035 28.8 12.3 139 300-441 4-162 (256)
382 2cn3_A Xyloglucanase, beta-1,4 58.8 2.1E+02 0.0072 31.3 24.8 59 330-388 24-91 (737)
383 2cn3_A Xyloglucanase, beta-1,4 54.3 2.5E+02 0.0084 30.7 28.3 101 288-389 24-152 (737)
384 3zwu_A Alkaline phosphatase PH 52.6 53 0.0018 35.1 9.8 59 414-472 478-549 (592)
385 2zux_A YESW protein; beta-prop 51.2 2.4E+02 0.0084 29.7 28.1 154 409-572 361-535 (591)
386 4d9s_A UVB-resistance protein 49.1 2.1E+02 0.0073 28.4 36.8 263 298-573 25-361 (406)
387 4fhn_B Nucleoporin NUP120; pro 48.3 56 0.0019 38.1 10.0 38 413-450 239-276 (1139)
388 3mvd_K Regulator of chromosome 44.1 2.5E+02 0.0087 27.9 32.3 219 298-527 84-374 (423)
389 3q6k_A 43.2 kDa salivary prote 43.5 2.6E+02 0.0089 27.8 25.2 186 286-471 86-341 (381)
390 3zwu_A Alkaline phosphatase PH 39.9 88 0.003 33.4 9.0 57 290-346 479-548 (592)
391 3f7f_A Nucleoporin NUP120; nuc 37.6 26 0.0009 38.3 4.5 37 540-578 223-259 (729)
392 2zux_A YESW protein; beta-prop 37.0 4E+02 0.014 28.1 23.9 193 351-549 152-424 (591)
393 3mez_B Mannose-specific lectin 36.4 1.6E+02 0.0055 23.4 9.9 24 332-357 59-82 (113)
394 4a9v_A PHOX; hydrolase, beta-p 35.5 1.1E+02 0.0037 32.5 8.7 61 496-557 476-549 (592)
395 1zvt_A Topoisomerase IV subuni 35.1 2.8E+02 0.0095 25.8 13.0 141 342-484 4-163 (256)
396 3mez_B Mannose-specific lectin 34.2 1.8E+02 0.006 23.2 10.0 25 415-441 59-83 (113)
397 3f7f_A Nucleoporin NUP120; nuc 33.8 58 0.002 35.6 6.4 36 456-493 224-259 (729)
398 3of7_A Regulator of chromosome 33.5 4E+02 0.014 27.0 27.8 191 370-572 148-408 (473)
399 1xks_A Nuclear pore complex pr 31.3 4.4E+02 0.015 26.9 21.8 147 293-444 44-239 (450)
400 4d9s_A UVB-resistance protein 28.8 4.3E+02 0.015 26.1 31.8 231 329-572 16-308 (406)
401 3mez_A Mannose-specific lectin 27.3 2.3E+02 0.0079 22.4 7.8 14 373-386 52-65 (111)
402 3hx6_A Type 4 fimbrial biogene 26.4 5.9E+02 0.02 26.8 17.0 147 424-571 86-286 (570)
403 1a12_A RCC1, regulator of chro 26.0 4.9E+02 0.017 25.7 35.6 230 329-572 59-368 (413)
404 2p4r_T E3 ubiquitin-protein li 25.0 46 0.0016 19.1 2.0 6 84-89 16-21 (26)
405 3mez_A Mannose-specific lectin 24.5 2.4E+02 0.0082 22.3 7.3 13 416-428 53-65 (111)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-47 Score=406.33 Aligned_cols=288 Identities=31% Similarity=0.522 Sum_probs=274.9
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
..+.+|..+|++++|+|++++|++|+.||.|+|||+.+++....+.+|...|.+++|++++++|++|+.||+|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred -CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 360 -SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 360 -~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
+.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++..+..+.+|...|.++.|++++.+|++|+.||.|++|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 6778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCe
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPN--------------------GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLI 498 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~--------------------g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V 498 (579)
|+++++....+.+|...|.+++|+|+ |.+|++|+.||.|++||++++.++..+.+|...|
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE
Confidence 99999999999999999999999996 6789999999999999999999999999999999
Q ss_pred EEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 499 SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 499 ~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+++|+++ +.+|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|+||+++
T Consensus 342 ~~v~~~~~-g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 342 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEEECSS-SSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999996 7889999999999999999999999999999999999999999999999999999999863
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.3e-46 Score=382.36 Aligned_cols=288 Identities=29% Similarity=0.486 Sum_probs=270.3
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
.....+.||...|.+++|++++++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 357 TDG-----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 357 ~~~-----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
+.. .....+.+|.+.|.++.|++++. +++++.|++|++||+.++..+..+.+|...|.+++|+|++.+|++|+.
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 654 34567889999999999998775 899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC--CCCeEEEEEeeCCCe
Q 008050 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH--SNLISQVKFEPQEGY 509 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~--~~~V~~v~~sp~~~~ 509 (579)
||.|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+ ...|.+++|+|+ +.
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~ 283 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GR 283 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-SS
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC-CC
Confidence 999999999999999999999999999999999999999999999999999999888777533 347999999996 88
Q ss_pred EEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 510 FLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+++|.+|++|+.||+|+|||
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999999999999999999999999999999996
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=376.74 Aligned_cols=290 Identities=25% Similarity=0.434 Sum_probs=271.2
Q ss_pred eeecccCCCCCeeEEEEcCC----CCEEEEEecCCeEEEEeCCCCee--EEEEeCCCCCeEEEEEccCCCEEEEEeCCCc
Q 008050 278 LDCTESGDDRPLSGCSYSHD----GNLLATSSLSGVVKIWSMPRLQK--FSALKGHTERATDVTFSPVSNHVATSSADRT 351 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spd----g~~latgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~ 351 (579)
+.....+|...|.+++|+++ +.+|++|+.||.|+||++.+... ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 44566799999999999975 67999999999999999877654 4568899999999999999999999999999
Q ss_pred EEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 008050 352 ARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG 430 (579)
Q Consensus 352 I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~ 430 (579)
|++||+. ++.+..+..+...+.+++|+|++++|++++.||.|++||+.++.....+..|...|.+++|+|++++|++|+
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 9999964 567788888999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 431 LDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 431 ~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+..+.+|...|.+++|+|+ +.+
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~~ 262 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD-DTH 262 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSE
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC-CCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996 788
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
|++++.||.|++||+.+++++..+.+|...|++++|++++++|++++.||.|++||+.
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.6e-45 Score=379.12 Aligned_cols=289 Identities=27% Similarity=0.424 Sum_probs=270.0
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
.....+.||...|++++|+|++++|++|+.||.|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC--CCCEEE
Q 008050 357 TDG-------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP--DGSLAA 427 (579)
Q Consensus 357 ~~~-------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp--dg~~l~ 427 (579)
+.. .....+..|...|.++.|++++.+|++++.|++|++||+++++.+..+.+|...|.+++|++ ++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 542 24567788999999999999999999999999999999999999999999999999999988 578999
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC--CCCeEEEEEee
Q 008050 428 SCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH--SNLISQVKFEP 505 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~--~~~V~~v~~sp 505 (579)
+|+.||.|++||+++++.+..+.+|...|++++|+|++.+|++|+.|++|++||++.++.+..+..+ ...+.++.|++
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999998887777644 34689999999
Q ss_pred CCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
+ +.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus 295 ~-g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 S-GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp T-SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred C-CCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 6 88999999999999999999999999999999999999999999999999999999996
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-44 Score=364.02 Aligned_cols=292 Identities=25% Similarity=0.378 Sum_probs=265.5
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
.+..++.+|...|.+++|+|++++|++|+.||.|+|||+.++..+..+..|...|.+++|++++++|++|+.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCC
Q 008050 357 T-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHP-DGSLAASCGLDA 433 (579)
Q Consensus 357 ~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg 433 (579)
. .++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+++|+| ++.+|++|+.||
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 5 46778899999999999999999999999999999999999887 44566789999999999999 678999999999
Q ss_pred eEEEEeCCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 434 LARVWDLRTGRSILALE-GHVKPVLGISFSP--NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
.|++||++++.....+. .|...+..++|++ ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|+ +.+
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~ 242 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPI 242 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS-SSE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC-CCE
Confidence 99999999887766654 5567899999987 7789999999999999999999999999999999999999996 789
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC--EEEEEEcCCeEEEEEcCCC
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ--SIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~--~L~s~s~Dg~I~iW~~~~~ 570 (579)
|++|+.||.|++||..+++++..+..|...+.+++|+|++. +|++|+.| .+.+|++.+.
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 99999999999999999999999999999999999999875 46776654 5888888653
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.6e-45 Score=382.71 Aligned_cols=296 Identities=26% Similarity=0.467 Sum_probs=270.2
Q ss_pred eEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
.+.....+.||...|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 44566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC--------CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEE-----ecCCCCeEEEEEc
Q 008050 355 WNTDG--------SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQ-----EGHSRSVYGIAFH 420 (579)
Q Consensus 355 wd~~~--------~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~-----~~~~~~V~~l~~s 420 (579)
|++.. .....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+ .+|...|.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 99643 2345678999999999999974 57999999999999999999988776 5788999999998
Q ss_pred C-CCCEEEEEeCCCeEEEEeCC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC---
Q 008050 421 P-DGSLAASCGLDALARVWDLR-TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS--- 495 (579)
Q Consensus 421 p-dg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~--- 495 (579)
+ ++++|++|+.||.|++||++ .++.+..+.+|...|.+++|+|+|.+|++|+.||+|++||+++++.+..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 7 88899999999999999998 457888899999999999999999999999999999999999999988876543
Q ss_pred ----CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe----cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 496 ----NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL----SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 496 ----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l----~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
..|++++|+|+ +.+|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|++|++|+.||+|+||++
T Consensus 295 ~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 295 DNELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CCSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred ccccCceEEEEECCC-CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 24899999996 889999999999999999999888877 689999999999999999999999999999999
Q ss_pred CCCC
Q 008050 568 RNKG 571 (579)
Q Consensus 568 ~~~~ 571 (579)
....
T Consensus 374 ~~~~ 377 (380)
T 3iz6_a 374 SGHR 377 (380)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 8654
No 7
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.3e-43 Score=355.72 Aligned_cols=294 Identities=33% Similarity=0.556 Sum_probs=271.8
Q ss_pred eEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
.+.+...+.+|...|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 355 WNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 355 wd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
||+. ++.+..+.+|...|.++.|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|++++.+|++|+.||
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9954 567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeE--EEEEeeCCCeE
Q 008050 434 LARVWDLRTGRSILALE-GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS--QVKFEPQEGYF 510 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~--~v~~sp~~~~~ 510 (579)
.|++||+++++.+..+. .+...+.+++|+|++.+|++++.||.|++||+++++.+..+..|...+. ...+++.++.+
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence 99999999998887764 4566799999999999999999999999999999999999988866533 23455556889
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE--cCCeEEEEEcC
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS--HDRWIKLWSTR 568 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s--~Dg~I~iW~~~ 568 (579)
|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .||+|++|+..
T Consensus 252 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999999999999999997 69999999964
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9e-43 Score=355.61 Aligned_cols=293 Identities=25% Similarity=0.409 Sum_probs=263.8
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCC-----CeeEEEEeCCCCCeEEEEEccCCCEEEEEe
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPR-----LQKFSALKGHTERATDVTFSPVSNHVATSS 347 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s 347 (579)
+.+.+...+.||.+.|++++|++++ ++|++|+.||.|++|++.. +..+..+.+|...|.+++|++++.+|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 4567888899999999999999965 8999999999999999864 345678899999999999999999999999
Q ss_pred CCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCC----
Q 008050 348 ADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD---- 422 (579)
Q Consensus 348 ~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd---- 422 (579)
.||+|++||+ .++.+..+.+|...|.+++|++++.+|++++.|++|++||+. +..+..+.+|...|.++.|+|.
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 9999999996 456778899999999999999999999999999999999996 4566777799999999999984
Q ss_pred --CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEE
Q 008050 423 --GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 423 --g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
+.++++++.|+.|++||+++++....+.+|...|.+++|+|+|.+|++|+.||.|++||+++++.+..+..+ ..|.+
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~ 242 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS 242 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence 448999999999999999999999999999999999999999999999999999999999999999988765 67999
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC--------CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--------HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
++|+|+ +.+|++++. +.+++|++.....+..+.. |...+.+++|+|+|++|++|+.||.|+||++.+.
T Consensus 243 ~~~sp~-~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 243 LAFSPN-RYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEECSS-SSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCC-CCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999997 778887765 4599999998887776643 4567999999999999999999999999998764
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-43 Score=362.24 Aligned_cols=301 Identities=25% Similarity=0.396 Sum_probs=256.4
Q ss_pred eEEeeecccCCCC-CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEE---EeCCCCCeEEEEEccCCCEEEEEeCCC
Q 008050 275 SLYLDCTESGDDR-PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA---LKGHTERATDVTFSPVSNHVATSSADR 350 (579)
Q Consensus 275 ~~~l~~~~~gh~~-~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~---l~~h~~~V~~l~~sp~~~~l~s~s~dg 350 (579)
.+.+...+.+|.. .|.+++|+|+|++|++|+.||.|+|||+.++..... ..+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4456667788987 999999999999999999999999999988764322 358999999999999999999999999
Q ss_pred cEEEEeCCCC---eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCCeEEEEEcCCCC
Q 008050 351 TARLWNTDGS---LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV---ELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 351 ~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~---~~~~~~~~~~~V~~l~~spdg~ 424 (579)
.|++|+.... .+..+.+|...|.+++|+|++++|++++.|++|++||+.++. .+..+.+|...|.+++|+|++.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999996543 467888999999999999999999999999999999998763 3456778999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------ce
Q 008050 425 LAASCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR---------------KS 487 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~---------------~~ 487 (579)
+|++|+.|+.|++||++++. ....+.+|...|.+++|+|+|++|++|+.|++|+|||.... ++
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998875 45778899999999999999999999999999999996321 23
Q ss_pred eEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe---------EEEEecCCCCcEEEEEEcCCC-CEEEEE
Q 008050 488 LYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK---------LVKSLSGHEAKVTSLDIHPDE-QSIATV 556 (579)
Q Consensus 488 ~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg-~~L~s~ 556 (579)
+..+.. |...|.+++|+++ +.+|++++.|+.|++|+..... ....+.+|...|++++|+|++ .+|++|
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQL-TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEECSSCSSCEEEEEECTT-TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eEEecCCCCCcEEEEEEecC-CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 445554 8889999999997 6789999999999999976532 123346899999999999988 489999
Q ss_pred EcCCeEEEEEcCCCCccccc
Q 008050 557 SHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 557 s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+.||+|++|++.+++.....
T Consensus 323 s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ETTSCEEEEEECC-------
T ss_pred CCCCcEEEEEecCCCCcccc
Confidence 99999999999987765443
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=363.37 Aligned_cols=287 Identities=21% Similarity=0.253 Sum_probs=243.5
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-----------CCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCc
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP-----------RLQKFSALKGHTERATDVTFSPVSNHVATSSADRT 351 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~-----------~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~ 351 (579)
.+|.+.|.+++|+|||++|++++ |+++++||.. ..........|...|.+++|+++ ..|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCE
Confidence 45778899999999999999887 6677777621 11111222336678999999998 47889999999
Q ss_pred EEEEeCCC-Cee----EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-E
Q 008050 352 ARLWNTDG-SLL----NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-L 425 (579)
Q Consensus 352 I~iwd~~~-~~~----~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~ 425 (579)
|+|||+.. +.+ ..+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|++++|++++. +
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999654 332 23458999999999999999999999999999999999999999999999999999999874 8
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEE
Q 008050 426 AASCGLDALARVWDLRTGRSILALE--GHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK 502 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~ 502 (579)
|++|+.||.|++||+++++....+. .+...+.+++|+| ++++|++|+.||+|+|||+++++++..+.+|...|++++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~ 264 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 8999999999999999999887764 4556799999999 567899999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCE-EEEEEcCCeEEEEEcCCCCc
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS-IATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~I~iW~~~~~~~ 572 (579)
|+|++..+|++|+.||+|+|||+.+++++ .+.+|.+.|++++|+|+++. |++||.||+|++|++.+...
T Consensus 265 fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 265 FSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99986689999999999999999998865 57899999999999999874 67899999999999987543
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.7e-43 Score=365.52 Aligned_cols=289 Identities=20% Similarity=0.285 Sum_probs=248.7
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCee----EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSL------SGVVKIWSMPRLQK----FSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~------dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
.+|.+.|++++|||||++|++|+. ||.|++|+..++.. .....+|...|.+++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999996 78899999877653 334456899999999999875 5678889999
Q ss_pred EEEeCCCC-e----eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EE
Q 008050 353 RLWNTDGS-L----LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-LA 426 (579)
Q Consensus 353 ~iwd~~~~-~----~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~l 426 (579)
+|||+... . .....+|...|.+++|+|++++|++++.|++|++||+.+++.+..+.+|...|++++|++++. ++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 99996542 2 234557999999999999999999999999999999999999999999999999999999875 88
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEE
Q 008050 427 ASCGLDALARVWDLRTGRSILALE--GHVKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKF 503 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~ 503 (579)
++++.||.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|++++|
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 999999999999999988766543 46677999999996 578999999999999999999999999999999999999
Q ss_pred eeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP-DEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
+|+++.+|++|+.||+|+|||+.+++++..+ +|.+.|++++|+| ++.+|++||.||+|++|++...+..
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9987789999999999999999999888665 7999999999998 8999999999999999999765443
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-42 Score=353.79 Aligned_cols=290 Identities=22% Similarity=0.373 Sum_probs=244.6
Q ss_pred EEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC--eeEEEE-eC-CCCCeEEEEEccCCCEEEEEeCCCc
Q 008050 276 LYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL--QKFSAL-KG-HTERATDVTFSPVSNHVATSSADRT 351 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~--~~~~~l-~~-h~~~V~~l~~sp~~~~l~s~s~dg~ 351 (579)
+.+...+.+|...|.+++|+++ +|++|+.||.|++||+.++ .....+ .+ |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4455677899999999999987 9999999999999999875 455555 44 9999999999999999999999999
Q ss_pred EEEEeCC--------CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----cEEEEEecCCCCeEEEEE
Q 008050 352 ARLWNTD--------GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG----VELLLQEGHSRSVYGIAF 419 (579)
Q Consensus 352 I~iwd~~--------~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~----~~~~~~~~~~~~V~~l~~ 419 (579)
|++|+.. ...+..+.+|...|.+++|+|++++|++++.|++|++||+... +.+..+.+|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 9999963 2356678899999999999999999999999999999999432 456677899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--------ce
Q 008050 420 HPDGSLAASCGLDALARVWDLRTG--RSILALEGHVKPVLGISFSPN--GYHLATGGEDNTCRIWDLRKR--------KS 487 (579)
Q Consensus 420 spdg~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~I~si~~sp~--g~~l~tgs~Dg~I~iwDl~~~--------~~ 487 (579)
+|++.+|++|+.|+.|++||++++ +++..+.+|...|.+++|+|+ +.+|++|+.|++|++||++.+ .+
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 999999999999999999999876 678889999999999999998 779999999999999998754 34
Q ss_pred eEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe--EEEE-ecCCCC-cEEEEEEcC--CCCEEEEEEcCC
Q 008050 488 LYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK--LVKS-LSGHEA-KVTSLDIHP--DEQSIATVSHDR 560 (579)
Q Consensus 488 ~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~--~~~~-l~~h~~-~V~~l~~s~--dg~~L~s~s~Dg 560 (579)
...+.. |...|.+++|+++ .+|++++.||.|++|+..+++ .+.. +.+|.. .|.+++|+| ++++|++|+.||
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~--~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEECCSCCSSCEEEEEECTT--SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred eeecccccccceEEEEEcCC--CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 445554 8899999999963 478999999999999988774 3433 467887 899999999 789999999999
Q ss_pred eEEEEEcCC
Q 008050 561 WIKLWSTRN 569 (579)
Q Consensus 561 ~I~iW~~~~ 569 (579)
+|+||++..
T Consensus 320 ~v~~W~~~~ 328 (330)
T 2hes_X 320 IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC--
T ss_pred cEEEEEecc
Confidence 999999864
No 13
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.4e-42 Score=360.26 Aligned_cols=284 Identities=26% Similarity=0.458 Sum_probs=255.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC------------------CeEEEEEccCCCEEEE
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTE------------------RATDVTFSPVSNHVAT 345 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~------------------~V~~l~~sp~~~~l~s 345 (579)
+|...|.+++|+|+|++|++|+ ++.++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 78999999999998888766542 4999999999999999
Q ss_pred EeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CC
Q 008050 346 SSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DG 423 (579)
Q Consensus 346 ~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg 423 (579)
|+.||.|++||+.. +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+. +...+.+++|+| ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 99999999999654 5677889999999999999999999999999999999999998877664 567899999999 89
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------
Q 008050 424 SLAASCGLDALARVWDLRTGRSILAL-------EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR----------- 485 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~~~~~-------~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~----------- 485 (579)
.+|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|.+|++|+.||.|++||+++.
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 99999999999999999999888776 578899999999999999999999999999999753
Q ss_pred -ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC------CCCEEEEEEc
Q 008050 486 -KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP------DEQSIATVSH 558 (579)
Q Consensus 486 -~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~------dg~~L~s~s~ 558 (579)
.+...+.+|...|.+++|+++ +.+|++|+.||.|++||..+++.+..+.+|.+.|.+++|++ ++++|++|+.
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECGG-GCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CcceEEEecccCcEEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 355677889999999999996 78999999999999999999999999999999999999986 6889999999
Q ss_pred CCeEEEEEcCCC
Q 008050 559 DRWIKLWSTRNK 570 (579)
Q Consensus 559 Dg~I~iW~~~~~ 570 (579)
||+|+||++...
T Consensus 379 Dg~i~iW~~~~~ 390 (393)
T 1erj_A 379 DCKARIWKYKKI 390 (393)
T ss_dssp TSEEEEEEEEEC
T ss_pred CCcEEECccccc
Confidence 999999998653
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.1e-42 Score=351.96 Aligned_cols=291 Identities=23% Similarity=0.356 Sum_probs=250.7
Q ss_pred eEEeeecccCCCCCeeEEEE-----cC-CCCEEEEEecCCeEEEEeCCCC-------eeEEEEeCCCCCeEEEEEccCCC
Q 008050 275 SLYLDCTESGDDRPLSGCSY-----SH-DGNLLATSSLSGVVKIWSMPRL-------QKFSALKGHTERATDVTFSPVSN 341 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~-----sp-dg~~latgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~sp~~~ 341 (579)
.+.+...+.||...|++++| ++ ++++|++|+.||.|++||+.+. .....+.+|...|.+++|++++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34566778899999999999 76 8999999999999999998743 45677889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe---cCCCCeEEE
Q 008050 342 HVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE---GHSRSVYGI 417 (579)
Q Consensus 342 ~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~---~~~~~V~~l 417 (579)
+|++|+.||+|++||+. ++.+..+.+|...|.+++|+|++++|++++.|++|++||+.... ..... +|...|.++
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeee
Confidence 99999999999999964 57788899999999999999999999999999999999998443 33332 688899999
Q ss_pred EEcCCC----------CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc
Q 008050 418 AFHPDG----------SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRK-RK 486 (579)
Q Consensus 418 ~~spdg----------~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-~~ 486 (579)
+|+|++ .+|++++.||.|++|| ..++....+.+|...|.+++|+|+|++|++|+.||.|++||++. ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~ 247 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY 247 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 999987 7999999999999999 45677888999999999999999999999999999999999954 34
Q ss_pred eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE--Eec-----------CCCCcEEEEEEcCCCCEE
Q 008050 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK--SLS-----------GHEAKVTSLDIHPDEQSI 553 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~--~l~-----------~h~~~V~~l~~s~dg~~L 553 (579)
....+. +...|.+++|+|+ +.++++ +.|+.|++|++.+++... .+. +|...|++++|+|+|++|
T Consensus 248 ~~~~~~-~~~~v~~v~~sp~-~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 248 PQREFD-AGSTINQIAFNPK-LQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp CSEEEE-CSSCEEEEEECSS-SCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred cceeec-CCCcEEEEEECCC-CCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 444443 4567999999997 666665 457889999998765432 333 688889999999999999
Q ss_pred EEEEcCCeEEEEEcCCC
Q 008050 554 ATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 554 ~s~s~Dg~I~iW~~~~~ 570 (579)
++|+.||.|++|++.++
T Consensus 325 ~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEETTSEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEcc
Confidence 99999999999998754
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.1e-41 Score=342.79 Aligned_cols=296 Identities=25% Similarity=0.453 Sum_probs=261.6
Q ss_pred cceEEeeecccCCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCe-----eEEEEeCCCCCeEEEEEccCCCEEEEE
Q 008050 273 VESLYLDCTESGDDRPLSGCSYSHD-GNLLATSSLSGVVKIWSMPRLQ-----KFSALKGHTERATDVTFSPVSNHVATS 346 (579)
Q Consensus 273 ~~~~~l~~~~~gh~~~I~~~~~spd-g~~latgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~l~~sp~~~~l~s~ 346 (579)
.+.+.+..++.||.+.|++++|+|+ +++|++|+.||+|+|||+.+.+ ....+.+|...|.+++|+|++++|+++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 4566788899999999999999998 6899999999999999987643 466788999999999999999999999
Q ss_pred eCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EEecCCCCeEEEEEcCCC-
Q 008050 347 SADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-LQEGHSRSVYGIAFHPDG- 423 (579)
Q Consensus 347 s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-~~~~~~~~V~~l~~spdg- 423 (579)
+.||.|++|+... ........+...+..+.+++++.+|++++.|+.+++||+....... ...+|...+.+++|++++
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999654 4556667788889999999999999999999999999998765544 345788999999999864
Q ss_pred -CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEE
Q 008050 424 -SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK 502 (579)
Q Consensus 424 -~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~ 502 (579)
.++++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++|+.||.|++||+++.+.+..+..+ ..|..+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 263 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC 263 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence 47899999999999999999999999999999999999999999999999999999999999999888765 6799999
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEec---------CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS---------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|+|+ +. +++++.|+.|++||++++..+..+. +|...|++++|+|+|++|++|+.||.|+||++.+|.
T Consensus 264 ~~~~-~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 264 FSPN-RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECSS-SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCC-Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9985 54 5566779999999999988776654 588899999999999999999999999999998875
No 16
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-41 Score=343.78 Aligned_cols=298 Identities=17% Similarity=0.281 Sum_probs=269.5
Q ss_pred ceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 008050 274 ESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTAR 353 (579)
Q Consensus 274 ~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~ 353 (579)
........+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCc-----------EEEEEecCCC--Ce
Q 008050 354 LWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGV-----------ELLLQEGHSR--SV 414 (579)
Q Consensus 354 iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~-----------~~~~~~~~~~--~V 414 (579)
+||+.. +.+..+. +...|.+++|+|++++|++++.+ +.|++||+..+. .......|.. .+
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999655 4555555 88999999999999999999999 999999997653 2233445555 89
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 415 YGIAFHPDGSLAASCGLDALARVWDLRT-GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
.+++|++++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+.
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 9999999999999999999999999999 78889999999999999999999999999999999999999999998887
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCC--------------EEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDM--------------TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg--------------~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
+...+..++|+|+ +.++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|++++.|
T Consensus 258 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 TDCPLNTAVITPL-KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp CSSCEEEEEECSS-SSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEecCC-CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 6788999999997 77888888887 89999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCccc
Q 008050 560 RWIKLWSTRNKGDEH 574 (579)
Q Consensus 560 g~I~iW~~~~~~~~~ 574 (579)
|.|++|++..+....
T Consensus 337 g~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDF 351 (369)
T ss_dssp SEEEEEEECHHHHTC
T ss_pred CeEEEEECccccchh
Confidence 999999998755443
No 17
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.4e-41 Score=350.81 Aligned_cols=291 Identities=16% Similarity=0.212 Sum_probs=264.5
Q ss_pred EEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe------eEEEEeCCCCCeEEEEEccC----C---CE
Q 008050 276 LYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ------KFSALKGHTERATDVTFSPV----S---NH 342 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~sp~----~---~~ 342 (579)
+.+...+.+|...|++++|++ ++|++|+.||.|++|++.+++ .+..+.+|...|.+++|+++ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 456677789999999999998 899999999999999999887 78888999999999999999 9 99
Q ss_pred EEEEeCCCcEEEEeCCCCe------eEEEecc-----cCCeEEEEEe----cCCCE-EEEEeCCCeEEEEECCC------
Q 008050 343 VATSSADRTARLWNTDGSL------LNTFQGH-----LDRLARMAFH----PSGKY-LGTTSFDKTWRLWDVDT------ 400 (579)
Q Consensus 343 l~s~s~dg~I~iwd~~~~~------~~~~~~h-----~~~I~~l~~s----p~~~~-l~s~s~dg~I~lwd~~~------ 400 (579)
|++++.||.|++|++.... ...+..| ...|.+++|+ +++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999999999999965433 7788888 5999999999 99999 99999999999999988
Q ss_pred CcEEE-----EE-------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec---C---CCCeEEEEEc
Q 008050 401 GVELL-----LQ-------EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG---H---VKPVLGISFS 462 (579)
Q Consensus 401 ~~~~~-----~~-------~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~---~---~~~I~si~~s 462 (579)
+..+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 55444 44 3488899999999999 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEeCC---CcEEEEECCCCceeEEEeC-------------CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 463 PNGYHLATGGED---NTCRIWDLRKRKSLYVIPA-------------HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 463 p~g~~l~tgs~D---g~I~iwDl~~~~~~~~~~~-------------~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
|++.+|++++.| |.|++||+++++.+..+.. |...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC-CCEEEEEeCCCeEEEEEcC
Confidence 999999999999 9999999999999999998 9999999999996 7899999999999999999
Q ss_pred CCeEEEEec------CC---------------CCcEEEEEEcCCC----------CEEEEEEcCCeEEEEEcCCC
Q 008050 527 DFKLVKSLS------GH---------------EAKVTSLDIHPDE----------QSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 527 ~~~~~~~l~------~h---------------~~~V~~l~~s~dg----------~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+++.+..+. +| ...|++++|++++ ++|++++.||.|++|++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999999998 88 9999999999998 79999999999999999875
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-40 Score=363.80 Aligned_cols=281 Identities=36% Similarity=0.664 Sum_probs=264.2
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
....+|...|.+++|+|++++|++++.||.|++||... ..+..+.+|...|.+++|+|++.+|++++.||.|++|+.++
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence 34568999999999999999999999999999999764 55677889999999999999999999999999999999999
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999999999999999996 5677778889999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|+ +.+|++++.||.
T Consensus 455 ~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~ 531 (577)
T 2ymu_A 455 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKT 531 (577)
T ss_dssp T-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT-SSCEEEEETTSE
T ss_pred C-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCC-CCEEEEEECcCE
Confidence 6 67788899999999999999999999999999999999995 68899999999999999999997 788999999999
Q ss_pred EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
|++||. +++++..+.+|.+.|++++|+|||++|+|++.||+|++||
T Consensus 532 v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 532 VKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999995 6889999999999999999999999999999999999997
No 19
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.3e-40 Score=344.13 Aligned_cols=292 Identities=21% Similarity=0.282 Sum_probs=255.6
Q ss_pred hcceEEeeecccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCeeEEEEe--CCCCCeEEEEEcc-CCCEEEEEe
Q 008050 272 KVESLYLDCTESGDDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPRLQKFSALK--GHTERATDVTFSP-VSNHVATSS 347 (579)
Q Consensus 272 ~~~~~~l~~~~~gh~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp-~~~~l~s~s 347 (579)
.+..+.+...+.+|...|++++|++++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 345566777889999999999999999 999999999999999999888877775 6999999999999 779999999
Q ss_pred CCCcEEEEeCCCCeeEEEeccc---CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC
Q 008050 348 ADRTARLWNTDGSLLNTFQGHL---DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 348 ~dg~I~iwd~~~~~~~~~~~h~---~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
.||.|++||+.+..+..+..+. ..|.+++|+|++++|++++.|+.|++||+ ++..+..+.+|...|.+++|+|++.
T Consensus 139 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 139 IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT
T ss_pred CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC
Confidence 9999999999888877776654 78999999999999999999999999999 5777888889999999999999999
Q ss_pred -EEEEEeCCCeEEEEeCCC----CeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeCCC---
Q 008050 425 -LAASCGLDALARVWDLRT----GRSILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS--- 495 (579)
Q Consensus 425 -~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~--- 495 (579)
+|++|+.||.|++||+++ +..+..+ .|...|.+++|+| +|.+|++++.||.|++||+++++.+..+..|.
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 999999999999999998 5666666 6999999999999 99999999999999999999988777776443
Q ss_pred ----C----------CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC--CCCcEEEEEEcCCCCEEEEEEcC
Q 008050 496 ----N----------LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--HEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 496 ----~----------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
. .+..+.|+++ +.+ +|+.||.|++||+.+++++..+.+ |...+..++|++++++|++|+ |
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~d-g~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPD-DQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCC-TTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T
T ss_pred cccccceEEeccCCCCceEEEecCC-ccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C
Confidence 2 2333555554 333 667899999999999999999987 457778889999999999997 9
Q ss_pred CeEEEEEcCC
Q 008050 560 RWIKLWSTRN 569 (579)
Q Consensus 560 g~I~iW~~~~ 569 (579)
|.|+||++++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999875
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-40 Score=368.14 Aligned_cols=288 Identities=18% Similarity=0.256 Sum_probs=259.8
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG- 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~- 359 (579)
....+.+.+.+++|+|+|++|++++ ++.|+||++.+++....+.+|...|++++|+|+|++|++|+.||+|+|||...
T Consensus 13 ~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 13 LPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CCCcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 3445678899999999999999998 67999999999999999999999999999999999999999999999999642
Q ss_pred --CeeEEEecccCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEeCC
Q 008050 360 --SLLNTFQGHLDRLARMAFHPSGKYLGTTSFD----KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-LAASCGLD 432 (579)
Q Consensus 360 --~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d----g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~~d 432 (579)
.....+.+|.+.|.+++|+|++++|++++.+ +.|++|| ++.....+.+|...|++++|+|++. .|++|+.|
T Consensus 92 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 92 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred cceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCC
Confidence 3456788999999999999999999998875 4778887 4555566779999999999999987 69999999
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-------CCCCCeEEEEEee
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-------AHSNLISQVKFEP 505 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-------~~~~~V~~v~~sp 505 (579)
+.|++||..+++....+.+|...|.+++|+|+|++|++|+.|++|++||+.+++.+..+. +|.+.|.+++|+|
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999888884 7999999999999
Q ss_pred CCCeEEEEEECCCEEEEEECCCCeEEE-------------------------------------------EecCCCCcEE
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDFKLVK-------------------------------------------SLSGHEAKVT 542 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~~~~~-------------------------------------------~l~~h~~~V~ 542 (579)
+ +.+|++++.|++|++||+.+++++. .+.+|...|+
T Consensus 250 d-g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 250 D-GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp T-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred C-CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 6 7899999999999999998876554 3357899999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 543 SLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 543 ~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
+++|+|+|++|++++.||+|++||+.++..
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 999999999999999999999999987654
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-40 Score=345.39 Aligned_cols=284 Identities=18% Similarity=0.260 Sum_probs=259.1
Q ss_pred cCCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeC----CCCe------eEEEEeC----------CCCCeEEEEEccCCC
Q 008050 283 SGDDRPLSGCSYSHDGN-LLATSSLSGVVKIWSM----PRLQ------KFSALKG----------HTERATDVTFSPVSN 341 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~-~latgs~dg~I~iwd~----~~~~------~~~~l~~----------h~~~V~~l~~sp~~~ 341 (579)
..|...|++++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8887 4555554 678999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE----------------
Q 008050 342 HVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL---------------- 405 (579)
Q Consensus 342 ~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~---------------- 405 (579)
+|++++.||.|++|+.++..+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 9999999999999998889999999999999999999999999999999999999998765443
Q ss_pred ----------------------------------------EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE
Q 008050 406 ----------------------------------------LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS 445 (579)
Q Consensus 406 ----------------------------------------~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~ 445 (579)
.+..|...|.+++|++++.+|++++.||.|++||+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 2235677899999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 446 ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 446 ~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
+..+..|...|.+++|++++ +|++++.||.|++||+++++.+..+..|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD-GQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT-SSEEEEEETTSCEEEEEC
T ss_pred ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC-CCEEEEEECCCeEEEEEC
Confidence 99999999999999999999 9999999999999999999999999999999999999996 789999999999999999
Q ss_pred CCCe--------------------EEEEecCCCC--cEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 526 RDFK--------------------LVKSLSGHEA--KVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 526 ~~~~--------------------~~~~l~~h~~--~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+++ .+..+.+|.. .|++++|++++++|++++.||.|++|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9888 8999999976 99999999999999999999999999985
No 22
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-39 Score=326.99 Aligned_cols=293 Identities=18% Similarity=0.269 Sum_probs=266.5
Q ss_pred cceEEeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 273 VESLYLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 273 ~~~~~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
...+.+...+.+|...|++++| +++++|++|+.||.|++||+.++.....+..|...|.+++|+|++.+|++++.||.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 3455677788999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-CCCEEE
Q 008050 353 RLWNTDG----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-DGSLAA 427 (579)
Q Consensus 353 ~iwd~~~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-dg~~l~ 427 (579)
++|++.. +....+.+|...|.++.| ++++|++++.||.|++|| .+.....+..|...+.++.|++ ++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 9999543 457788999999999999 578999999999999999 6777788889999999999998 899999
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeC
Q 008050 428 SCGLDALARVWDLRTGRSILALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~~-~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~ 506 (579)
+++.||.|++|| .++....+.. |...|.+++|++++. |++++.||.|++||+++++.+..+..|...|.+++|+|+
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 999999999999 5667777777 889999999999998 999999999999999999999999999999999999997
Q ss_pred CCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+ .|++++.||.|++||+.+++.+..+..|...|++++|+++++ +++++.||.|++|++.++......
T Consensus 237 -~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 237 -G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp -S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred -C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 4 588999999999999999999999999999999999999998 667999999999999887665443
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.4e-40 Score=365.06 Aligned_cols=289 Identities=20% Similarity=0.296 Sum_probs=260.4
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC--eeEEEEeCCCCCeEEEEEccCCCEEEEEeCC----CcEE
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL--QKFSALKGHTERATDVTFSPVSNHVATSSAD----RTAR 353 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d----g~I~ 353 (579)
..+.+|...|++++|+|+|++||+|+.||.|+|||+.++ .....+.+|.+.|.+++|+|++++|++++.+ +.|+
T Consensus 53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 445799999999999999999999999999999998754 3456788999999999999999999998875 4799
Q ss_pred EEeCCCCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 354 LWNTDGSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 354 iwd~~~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
+||. +.....+.+|...|.+++|+|++. .|++++.|++|++||..+++....+.+|...|++++|+|+|++|++|+.|
T Consensus 133 ~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 133 LFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp ETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 9984 556677899999999999999987 59999999999999999998888899999999999999999999999999
Q ss_pred CeEEEEeCCCCeEEEEEe-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---------------
Q 008050 433 ALARVWDLRTGRSILALE-------GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYV--------------- 490 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~-------~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~--------------- 490 (579)
+.|++||+.+++.+..+. +|...|.+++|+|+|.+|++++.|++|++||+.+++.+..
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 999999999999988884 7999999999999999999999999999999988765443
Q ss_pred ----------------------------EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-cCCCCcE
Q 008050 491 ----------------------------IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHEAKV 541 (579)
Q Consensus 491 ----------------------------~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V 541 (579)
+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++....+ .+|...|
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd-g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence 3468889999999996 889999999999999999999887766 6799999
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 542 TSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 542 ~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.+++|++++ .|++++.|+.+++|++....
T Consensus 371 ~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 371 TGIKTTSKG-DLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEEEECTTS-CEEEEETTTEEEEECSSSSS
T ss_pred EEEEECCCC-cEEEEEcCCceEEeecCCcc
Confidence 999999765 68899999999999987654
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-39 Score=329.48 Aligned_cols=259 Identities=22% Similarity=0.387 Sum_probs=237.6
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
+...++.+|.+.|.+++|+|++.+|++++.||.|++||.. +..+..+..|...|.++.|++++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 4566788999999999999999999999999999999965 456788899999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCC
Q 008050 398 VDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSP-NGYHLATGGEDN 475 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg 475 (579)
+.+++.+..+.+|...|++++|+|++.+|++|+.||.|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 55677889999999999999 678999999999
Q ss_pred cEEEEECCCCceeEEEe-CCCCCeEEEEEeeC-CCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEE
Q 008050 476 TCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQ-EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSI 553 (579)
Q Consensus 476 ~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~-~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L 553 (579)
+|++||++++.....+. .|...+..+.|++. ++.+|++|+.||.|++||+++++++..+.+|...|++++|+|++.+|
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE
Confidence 99999999887776665 45678999999874 36799999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEEcCCCCcccccc
Q 008050 554 ATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 554 ~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
++|+.||+|++||+.+++....+.
T Consensus 244 ~s~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 244 ISGSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEcCCCeEEEEECCCCceeeecc
Confidence 999999999999999887665543
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9.5e-40 Score=337.68 Aligned_cols=286 Identities=20% Similarity=0.269 Sum_probs=255.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ--KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL 361 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~ 361 (579)
.|..+|++++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++|++....
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 489999999999999999999999999999999987 888899999999999999999999999999999999976543
Q ss_pred ---eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 362 ---LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE----LLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 362 ---~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~----~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
...+..|...|.+++|++++++|++++.|+.|++||+..+.. ......|...|.+++|+|++.+|++++.||.
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 333467899999999999999999999999999999988763 3333578899999999999999999999999
Q ss_pred EEEEeC------------------CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCC
Q 008050 435 ARVWDL------------------RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN 496 (579)
Q Consensus 435 I~iwd~------------------~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~ 496 (579)
|++||+ ..++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+..|..
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC
Confidence 999995 46788889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeeCCCeEEEEEECCCEEEEEECCC--CeE--E------------------------------------EEe-c
Q 008050 497 LISQVKFEPQEGYFLVTGSYDMTVKVWSGRD--FKL--V------------------------------------KSL-S 535 (579)
Q Consensus 497 ~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~--~~~--~------------------------------------~~l-~ 535 (579)
.|.+++|+++ +.+|++| .||.|++|++.+ ++. + ..+ .
T Consensus 246 ~v~~~~~~~~-~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (372)
T 1k8k_C 246 PLLAVTFITE-SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 323 (372)
T ss_dssp CEEEEEEEET-TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred CeEEEEEecC-CCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc
Confidence 9999999996 7777777 899999999887 421 1 233 4
Q ss_pred CCCCcEEEEEEc-CCC---CEEEEEEcCCeEEEEEcCCCC
Q 008050 536 GHEAKVTSLDIH-PDE---QSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 536 ~h~~~V~~l~~s-~dg---~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 324 ~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 324 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 899999999976 666 999999999999999997643
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-39 Score=365.21 Aligned_cols=292 Identities=25% Similarity=0.444 Sum_probs=256.7
Q ss_pred eEEeeecccCCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCC-----eeEEEEeCCCCCeEEEEEccCCCEEEEEeC
Q 008050 275 SLYLDCTESGDDRPLSGCSYSHDG-NLLATSSLSGVVKIWSMPRL-----QKFSALKGHTERATDVTFSPVSNHVATSSA 348 (579)
Q Consensus 275 ~~~l~~~~~gh~~~I~~~~~spdg-~~latgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~ 348 (579)
.+.+...+.+|...|++++|++++ ++|++|+.||.|+||++.+. .....+.+|...|.+++|++++++|++|+.
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 345667788999999999999875 79999999999999998753 456678999999999999999999999999
Q ss_pred CCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCeEEEEEcCCC-
Q 008050 349 DRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ---EGHSRSVYGIAFHPDG- 423 (579)
Q Consensus 349 dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~---~~~~~~V~~l~~spdg- 423 (579)
||.|++||+. +.....+.+|...|.+++|+|++++|++++.|++|++||+......... .+|...|.+++|+|++
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 9999999965 4677888999999999999999999999999999999998765544433 3688899999999986
Q ss_pred -CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEE
Q 008050 424 -SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK 502 (579)
Q Consensus 424 -~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~ 502 (579)
.+|++|+.||.|++||+++++....+.+|...|++++|+|+|++|++|+.||.|++||+++++.+..+.. ...|.+++
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~ 609 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALC 609 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999999998887765 46799999
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC-------------------CcEEEEEEcCCCCEEEEEEcCCeEE
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE-------------------AKVTSLDIHPDEQSIATVSHDRWIK 563 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~dg~~L~s~s~Dg~I~ 563 (579)
|+|+ +.+|++++ ++.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||+|+
T Consensus 610 ~sp~-~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 610 FSPN-RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687 (694)
T ss_dssp ECSS-SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EcCC-CcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence 9996 67666655 6679999999999888775432 1378999999999999999999999
Q ss_pred EEEcCC
Q 008050 564 LWSTRN 569 (579)
Q Consensus 564 iW~~~~ 569 (579)
||++..
T Consensus 688 iW~i~~ 693 (694)
T 3dm0_A 688 VWGIGR 693 (694)
T ss_dssp EEEC--
T ss_pred EEeccC
Confidence 999853
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.9e-39 Score=325.94 Aligned_cols=282 Identities=20% Similarity=0.329 Sum_probs=256.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee---EEEEe--CCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK---FSALK--GHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~---~~~l~--~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
..+|...|++++|++++++|++++ ||.|++||+.++.. +..+. +|...|.+++|+|++++|++++.||.|++|+
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999999 99999999987653 33343 7999999999999999999999999999999
Q ss_pred CCCC---eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 357 TDGS---LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 357 ~~~~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
.... ....+..|...|.+++|++++++|++++.||.|++||+.+++.+..+..|...+.+++|+|++++|++++.||
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 7653 4567788999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
.|++||+++++.+..+. +...+.+++|+|++.+|++++.||.|++||+++++. ..+..|...|.++.|+++ +.+|++
T Consensus 206 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~ 282 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYC-GKWFVS 282 (337)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTT-SSEEEE
T ss_pred cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCC-CCEEEE
Confidence 99999999999888775 677899999999999999999999999999988765 467789999999999996 788999
Q ss_pred EECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 514 GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
++.||.|++||+.+++.+... .|...|++++|++++++|++++.||.|++|++.
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999999999999999888554 478899999999999999999999999999973
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.3e-39 Score=351.50 Aligned_cols=283 Identities=35% Similarity=0.645 Sum_probs=265.9
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
....+|...|.+++|+|++++|++++.|+.|++|+. +++....+.+|...|.+++|+|++.+|++++.||.|++|+.++
T Consensus 256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 456789999999999999999999999999999996 5677788899999999999999999999999999999999999
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
..+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 335 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999999999999999999999999999999999996 5677778889999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 440 LRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 440 ~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
. +++.+..+.+|...|++++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+ +.+|++++.|+.
T Consensus 414 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd-~~~las~~~d~~ 490 (577)
T 2ymu_A 414 R-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKT 490 (577)
T ss_dssp T-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT-SCEEEEEETTSE
T ss_pred C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCE
Confidence 5 67888899999999999999999999999999999999996 67888899999999999999996 889999999999
Q ss_pred EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
|++||. +++++..+.+|...|++++|+|+|++|++++.||.|++||..
T Consensus 491 i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 491 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 999995 688999999999999999999999999999999999999964
No 29
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-39 Score=343.11 Aligned_cols=256 Identities=27% Similarity=0.500 Sum_probs=242.3
Q ss_pred EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q 008050 321 FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD 399 (579)
Q Consensus 321 ~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~ 399 (579)
...+.+|...|++++|+|++.+|++|+.||+|++||. .++....+.+|...|.+++|++++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 3456789999999999999999999999999999995 456788899999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008050 400 TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI 479 (579)
Q Consensus 400 ~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~i 479 (579)
+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++++.++..+.+|...|.++.|+++|.+|++|+.||+|++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEeCCCCCeEEEEEeeCC-------------------CeEEEEEECCCEEEEEECCCCeEEEEecCCCCc
Q 008050 480 WDLRKRKSLYVIPAHSNLISQVKFEPQE-------------------GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAK 540 (579)
Q Consensus 480 wDl~~~~~~~~~~~~~~~V~~v~~sp~~-------------------~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~ 540 (579)
||++++.+...+..|...|.++.|+|++ +.+|++|+.||.|++||+.++.++..+.+|...
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc
Confidence 9999999999999999999999999853 568999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 541 VTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 541 V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
|++++|+++|++|++|+.||+|++||+.+++....+
T Consensus 341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 999999999999999999999999999887766544
No 30
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=334.61 Aligned_cols=294 Identities=15% Similarity=0.229 Sum_probs=250.6
Q ss_pred eeecccCCCCCeeEEEEcCCCCE-EEEEec---CCeEEEEeCCCCeeEEEE-eCCCCCeEEEEEccC---CCEEEEEeCC
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNL-LATSSL---SGVVKIWSMPRLQKFSAL-KGHTERATDVTFSPV---SNHVATSSAD 349 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~-latgs~---dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp~---~~~l~s~s~d 349 (579)
+.....+|...|.+++|+|++.. +++|+. ||.|+|||+.+++..... .+|...|.+++|+|+ +.+|++|+.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 34455679999999999999965 456665 999999999988766543 379999999999998 6999999999
Q ss_pred CcEEEEeCCC-C-eeEEEecccCCeEEEEE------ecCCCEEEEEeCCCeEEEEECCCCc-EEEEEecCCC----CeEE
Q 008050 350 RTARLWNTDG-S-LLNTFQGHLDRLARMAF------HPSGKYLGTTSFDKTWRLWDVDTGV-ELLLQEGHSR----SVYG 416 (579)
Q Consensus 350 g~I~iwd~~~-~-~~~~~~~h~~~I~~l~~------sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~~~~~~~----~V~~ 416 (579)
|.|++|++.. + .+..+.+|...|.++.| ++++++|++++.||.|++||+.++. .+..+..|.+ .+.+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 9999999654 3 68889999999999965 6789999999999999999999886 5666655444 7899
Q ss_pred EE----EcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeE
Q 008050 417 IA----FHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP---NGYHLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 417 l~----~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp---~g~~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
+. |++++++|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++|+.||.|++||+++++.+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK 248 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence 98 788999999999999999999999987544 56888999999999 99999999999999999998877655
Q ss_pred EEe-----CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-------------------eEEEEecCCCCcEEEEE
Q 008050 490 VIP-----AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-------------------KLVKSLSGHEAKVTSLD 545 (579)
Q Consensus 490 ~~~-----~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-------------------~~~~~l~~h~~~V~~l~ 545 (579)
.+. .|...|++++|+|++..+|++|+.||.|++||+.++ +.+..+.+|...|++++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence 554 899999999999974448999999999999998743 57788899999999999
Q ss_pred EcCCCCEEE-EEEcCCeEEEEEcCCCCc
Q 008050 546 IHPDEQSIA-TVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 546 ~s~dg~~L~-s~s~Dg~I~iW~~~~~~~ 572 (579)
|+|++++|+ +++.||.|++|++.+.+.
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999998 899999999999987653
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-39 Score=334.84 Aligned_cols=288 Identities=19% Similarity=0.288 Sum_probs=253.5
Q ss_pred ecccCCCCCeeEEEEcCC----CCEEEEEecCCeEEEEeCCCCeeEEEEeC-----CCCCeEEEEEccC----CCEEEEE
Q 008050 280 CTESGDDRPLSGCSYSHD----GNLLATSSLSGVVKIWSMPRLQKFSALKG-----HTERATDVTFSPV----SNHVATS 346 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spd----g~~latgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~sp~----~~~l~s~ 346 (579)
....+|..+|++++|+|+ ..++++++.+|.|++||+.+++.+..+.. |...|.+++|+++ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455699999999999984 55677777788999999998877766653 6678999999998 6799999
Q ss_pred eCCCcEEEEeCC-CCeeEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCeEEEEEcC
Q 008050 347 SADRTARLWNTD-GSLLNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQ---EGHSRSVYGIAFHP 421 (579)
Q Consensus 347 s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~---~~~~~~V~~l~~sp 421 (579)
+.||.|++||.. ++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+++.+..+ ..|...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 999999999954 677888899999999999999 8999999999999999999999988887 68999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEe----------------------------cCCCCeEEEEEcCCCCEEEEEeC
Q 008050 422 DGSLAASCGLDALARVWDLRTGRSILALE----------------------------GHVKPVLGISFSPNGYHLATGGE 473 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~----------------------------~~~~~I~si~~sp~g~~l~tgs~ 473 (579)
++.+|++++.||.|++||+++++....+. .|...|.+++|+ +.+|++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 99999999999999999999876543333 389999999998 779999999
Q ss_pred CCcEEEEECCCCce--------------eEEEeCCCCCeEEEEEeeCC-CeEEEEEECCCEEEEEECCCCe----EEEEe
Q 008050 474 DNTCRIWDLRKRKS--------------LYVIPAHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGRDFK----LVKSL 534 (579)
Q Consensus 474 Dg~I~iwDl~~~~~--------------~~~~~~~~~~V~~v~~sp~~-~~~l~sgs~dg~I~iwd~~~~~----~~~~l 534 (579)
||.|++||++++.. +..+..|...|.+++|+++. +.+|++|+.||.|++||+.+++ .+..+
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence 99999999987644 77888899999999999952 7899999999999999999875 55577
Q ss_pred cCC--CCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 535 SGH--EAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 535 ~~h--~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
.+| ...|++++|++++++|++++.||.|++||+.+
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 777 78999999999999999999999999999853
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=322.50 Aligned_cols=249 Identities=22% Similarity=0.420 Sum_probs=237.0
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
.+...+.||...|.+++|++++.++++|+.||.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|+
T Consensus 71 ~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 71 DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150 (321)
T ss_dssp EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEE
T ss_pred eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 357 TD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 357 ~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
.. ++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||.|
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i 230 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence 54 56777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
++||+++++....+.+|...|.+++|+|++.+|++|+.|++|++||+++++++..+..|...|.+++|+++ +.+|++++
T Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~s~~ 309 (321)
T 3ow8_A 231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN-GSKIVSVG 309 (321)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEE
T ss_pred EEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC-CCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 78899999
Q ss_pred CCCEEEEEECC
Q 008050 516 YDMTVKVWSGR 526 (579)
Q Consensus 516 ~dg~I~iwd~~ 526 (579)
.||.|++||..
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999963
No 33
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.7e-40 Score=350.07 Aligned_cols=294 Identities=21% Similarity=0.310 Sum_probs=241.8
Q ss_pred EEeeecccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCeeEE--EEeCCCCCeEEEEEcc-CCCEEEEEeCCCc
Q 008050 276 LYLDCTESGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPRLQKFS--ALKGHTERATDVTFSP-VSNHVATSSADRT 351 (579)
Q Consensus 276 ~~l~~~~~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~ 351 (579)
+.+.....+|...|+|++|+| ++++||+|+.||.|+|||+.+++... .+.+|.+.|++|+|+| ++++|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 344455667899999999999 56799999999999999998765443 4568999999999998 6889999999999
Q ss_pred EEEEeCCCCeeEEEecc---cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEE
Q 008050 352 ARLWNTDGSLLNTFQGH---LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-LAA 427 (579)
Q Consensus 352 I~iwd~~~~~~~~~~~h---~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~l~ 427 (579)
|++||+.+.....+..+ ...+.+++|++++.+|++|+.||.|++||+.. +.+..+.+|...|++++|+|++. +|+
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEE
Confidence 99999988776666543 34578999999999999999999999999965 45556778999999999999876 788
Q ss_pred EEeCCCeEEEEeCCCCeEEEE---EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCC------Ce
Q 008050 428 SCGLDALARVWDLRTGRSILA---LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN------LI 498 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~---~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~------~V 498 (579)
+|+.||.|++||+++++.... ..+|...|++++|+|+|.+|++|+.||.|+|||++++.....+..|.. .+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 999999999999998764433 357899999999999999999999999999999999988887766543 23
Q ss_pred EEEEEeeCCCeEEEEEE------------CCCEEEEEECCCCeEEEEec-CCCCcEEEE-EEcCCCCEEEEEEcCCeEEE
Q 008050 499 SQVKFEPQEGYFLVTGS------------YDMTVKVWSGRDFKLVKSLS-GHEAKVTSL-DIHPDEQSIATVSHDRWIKL 564 (579)
Q Consensus 499 ~~v~~sp~~~~~l~sgs------------~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l-~~s~dg~~L~s~s~Dg~I~i 564 (579)
..+.|++. +.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+|
T Consensus 348 ~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 348 IKAAWHPR-YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CBCEECSS-SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred EEEEEcCC-CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 34567775 44444443 34679999999999988874 688888887 6999999999876 889999
Q ss_pred EEcCCCCc
Q 008050 565 WSTRNKGD 572 (579)
Q Consensus 565 W~~~~~~~ 572 (579)
|++.+++.
T Consensus 426 W~~~~gk~ 433 (435)
T 4e54_B 426 WSQQEART 433 (435)
T ss_dssp CCCC----
T ss_pred EECCcCee
Confidence 99988764
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=342.27 Aligned_cols=287 Identities=18% Similarity=0.334 Sum_probs=258.2
Q ss_pred CCeeEEEEcCCCC-EEEEE----------ecCCeEEEEeCCCCe---eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 287 RPLSGCSYSHDGN-LLATS----------SLSGVVKIWSMPRLQ---KFSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 287 ~~I~~~~~spdg~-~latg----------s~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
..|.+++|+|+|+ +|++| +.||.|+|||+.++. .+.. ..|...|.+++|++++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeE
Confidence 4688999999987 99999 889999999998875 3333 3588999999999999999999999999
Q ss_pred EEEeCCC-----CeeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCc------EEEE---EecCCCCeEEE
Q 008050 353 RLWNTDG-----SLLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGV------ELLL---QEGHSRSVYGI 417 (579)
Q Consensus 353 ~iwd~~~-----~~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~------~~~~---~~~~~~~V~~l 417 (579)
++|++.. ..+..+.+|...|.+++|+|+ +++|++++.||.|++||+.++. .... ...|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999765 478888999999999999998 8999999999999999999876 3322 35788999999
Q ss_pred EEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecC------CCCeEEEEEcCCC-CEEEEEeCCC---cEEEEECCCC-
Q 008050 418 AFHPD-GSLAASCGLDALARVWDLRTGRSILALEGH------VKPVLGISFSPNG-YHLATGGEDN---TCRIWDLRKR- 485 (579)
Q Consensus 418 ~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~------~~~I~si~~sp~g-~~l~tgs~Dg---~I~iwDl~~~- 485 (579)
+|+++ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99998 789999999999999999999999998876 7889999999987 6899999998 9999999986
Q ss_pred ceeEEEe-CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC-CEEEEEEcCCeEE
Q 008050 486 KSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE-QSIATVSHDRWIK 563 (579)
Q Consensus 486 ~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~ 563 (579)
..+..+. .|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|++ .+|++++.||.|+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 6777787 8999999999999558899999999999999999999999999999999999999999 8999999999999
Q ss_pred EEEcCCCCccc
Q 008050 564 LWSTRNKGDEH 574 (579)
Q Consensus 564 iW~~~~~~~~~ 574 (579)
+|++.+.....
T Consensus 332 iw~~~~~~~~~ 342 (416)
T 2pm9_A 332 VQTLQNLTNTL 342 (416)
T ss_dssp EEESCCCCCSS
T ss_pred EEEccCCCCCc
Confidence 99998876443
No 35
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-40 Score=345.45 Aligned_cols=288 Identities=16% Similarity=0.309 Sum_probs=256.6
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC----CeeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeC
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR----LQKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNT 357 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~ 357 (579)
..|...|.+++|++++++|++|+.||.|++|++.+ .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 35889999999999999999999999999999987 4578888999999999999998 899999999999999996
Q ss_pred CCCe-------e---EEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCCeEEEEEc
Q 008050 358 DGSL-------L---NTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVELLLQEGH------SRSVYGIAFH 420 (579)
Q Consensus 358 ~~~~-------~---~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~------~~~V~~l~~s 420 (579)
.... . ..+..|...|.+++|+++ +.+|++++.||.|++||+.+++.+..+..+ ...|.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 5432 2 233678899999999999 789999999999999999999988888766 7889999999
Q ss_pred CCC-CEEEEEeCCC---eEEEEeCCCC-eEEEEEe-cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 421 PDG-SLAASCGLDA---LARVWDLRTG-RSILALE-GHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 421 pdg-~~l~sg~~dg---~I~iwd~~~~-~~~~~~~-~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
|++ .++++++.|+ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 997 6999999998 9999999986 6677777 8999999999999 999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec-----------------------------------CCC
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS-----------------------------------GHE 538 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-----------------------------------~h~ 538 (579)
|...|.+++|+|++..+|++++.||.|++|++.+........ .|.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 999999999999855899999999999999988765322111 156
Q ss_pred CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 539 AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 539 ~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
..+++++|+++|++|++++.||.|+||++.+.
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 77889999999999999999999999999764
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-40 Score=341.19 Aligned_cols=280 Identities=15% Similarity=0.189 Sum_probs=235.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC--eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC--
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL--QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS-- 360 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-- 360 (579)
+..+|++++|+|+|++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+...
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 5679999999999999999999999999999988 778888999999999999999999999999999999997654
Q ss_pred --eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE---EEEEec-CCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 361 --LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE---LLLQEG-HSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 361 --~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~---~~~~~~-~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
....+..|...|.+++|+|++++|++++.|+.|++||+.++.. ...+.. |...|++++|+|++++|++++.||.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 4677888999999999999999999999999999999998863 555666 9999999999999999999999999
Q ss_pred EEEEeCC------------------CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEe
Q 008050 435 ARVWDLR------------------TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS----LYVIP 492 (579)
Q Consensus 435 I~iwd~~------------------~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~----~~~~~ 492 (579)
|++||++ .++.+..+ .|...|.+++|+|+|++|++++.||.|++||+++++. +..+.
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 248 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec
Confidence 9999985 35566666 8999999999999999999999999999999999887 78889
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe---------------------------------------EEEE
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK---------------------------------------LVKS 533 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~---------------------------------------~~~~ 533 (579)
.|...|.+++|+|+ +.+|++|+.++.+ +|+..... ....
T Consensus 249 ~~~~~v~~~~~s~~-~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
T 3dwl_C 249 LSQLPLRSLLWANE-SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326 (377)
T ss_dssp CSSSCEEEEEEEET-TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred CCCCceEEEEEcCC-CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence 99999999999997 7888888777665 66554111 0000
Q ss_pred -------------ecCCCCcEEEEEEcCCC-C---EEEEEEcCCeEEEEEc
Q 008050 534 -------------LSGHEAKVTSLDIHPDE-Q---SIATVSHDRWIKLWST 567 (579)
Q Consensus 534 -------------l~~h~~~V~~l~~s~dg-~---~L~s~s~Dg~I~iW~~ 567 (579)
...|.+.|+++.+.+.+ . .|+|||.||.|+||++
T Consensus 327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 11399999999976543 3 5999999999999985
No 37
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=326.34 Aligned_cols=298 Identities=18% Similarity=0.270 Sum_probs=250.3
Q ss_pred eeecccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCeeEEEEe-------------CCCCCeEEEEEcc-CCCE
Q 008050 278 LDCTESGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPRLQKFSALK-------------GHTERATDVTFSP-VSNH 342 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~sp-~~~~ 342 (579)
......+|...|++++|+| ++++|++|+.||.|++||+.++.....+. +|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3445678999999999999 99999999999999999998876554443 5999999999999 7789
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEE
Q 008050 343 VATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSG---KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF 419 (579)
Q Consensus 343 l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~---~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~ 419 (579)
|++++.||.|++|++..........+...+.++.|++.+ .++++++.||.|++||+.++..+..+..|...|.+++|
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence 999999999999998776655555688899999999854 49999999999999999999988888899999999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEeCCCCe-EEEEE---------------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 420 HPDGS-LAASCGLDALARVWDLRTGR-SILAL---------------EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 420 spdg~-~l~sg~~dg~I~iwd~~~~~-~~~~~---------------~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
+|++. +|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++.+|++++.||.|++||+
T Consensus 195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 99998 68999999999999998875 44444 568889999999999999999999999999999
Q ss_pred CCCceeEEEeCCC----CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 483 RKRKSLYVIPAHS----NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 483 ~~~~~~~~~~~~~----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
++++....+..+. .....+.+.......+++++.++.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 275 SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred CCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence 9887665443321 111112222233556677788999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCcccc
Q 008050 559 DRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 559 Dg~I~iW~~~~~~~~~~ 575 (579)
||.|++|++.+++....
T Consensus 355 dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 355 DCNILAWVPSLYEPVPD 371 (408)
T ss_dssp TSCEEEEEECC------
T ss_pred CCeEEEEeCCCCCccCC
Confidence 99999999998765543
No 38
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=337.76 Aligned_cols=284 Identities=17% Similarity=0.239 Sum_probs=244.5
Q ss_pred ecccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCC---Ce---eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 008050 280 CTESGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPR---LQ---KFSALKGHTERATDVTFSPVSNHVATSSADRTA 352 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~---~~---~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I 352 (579)
....+|...|++++|+| ++++|++|+.||.|+|||+.+ +. ....+ .|...|.+++|++++++|++|+.||.|
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 33478999999999999 999999999999999999876 32 23333 499999999999999999999999999
Q ss_pred EEEeC----CCCeeEEEec------------ccCCeEEEE--EecCCCEEEEEeCCCeEEEEECCCCcEEEEEec--CCC
Q 008050 353 RLWNT----DGSLLNTFQG------------HLDRLARMA--FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG--HSR 412 (579)
Q Consensus 353 ~iwd~----~~~~~~~~~~------------h~~~I~~l~--~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~--~~~ 412 (579)
++||+ .++....+.. +...+.++. +++++.+|++++.||.|++||+.+++.+..+.+ |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 99997 3444433332 445566666 557899999999999999999999999988887 889
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEECCCCce
Q 008050 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSP----NGYHLATGGEDNTCRIWDLRKRKS 487 (579)
Q Consensus 413 ~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp----~g~~l~tgs~Dg~I~iwDl~~~~~ 487 (579)
.|++++|+|++.+|++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++|+.||.|++||++++++
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC 295 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence 99999999999999999999999999999999999886 7888899996664 678999999999999999999998
Q ss_pred eEEEeCC--------------------------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-----
Q 008050 488 LYVIPAH--------------------------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG----- 536 (579)
Q Consensus 488 ~~~~~~~--------------------------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~----- 536 (579)
+..+..| ...|++++|+ + +.+|++|+.||.|++||+.+++.+..+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 373 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N-DKILLTDEATSSIVMFSLNELSSSKAVISPSRFS 373 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T-TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CC
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C-ceEEEecCCCCeEEEEECCCcccceEEecccccC
Confidence 8887754 3457888998 4 68999999999999999998876666654
Q ss_pred --------------------------------CCCcEEEEEEcCC--CCEEEEEEcCCeEEEEE
Q 008050 537 --------------------------------HEAKVTSLDIHPD--EQSIATVSHDRWIKLWS 566 (579)
Q Consensus 537 --------------------------------h~~~V~~l~~s~d--g~~L~s~s~Dg~I~iW~ 566 (579)
|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999988 77999999999999995
No 39
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-36 Score=321.25 Aligned_cols=291 Identities=24% Similarity=0.410 Sum_probs=251.0
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe--CCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK--GHTERATDVTFSPVSNHVATSSADRTARL 354 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp~~~~l~s~s~dg~I~i 354 (579)
.|......++-.++.++||++ ++|++|. |++|+|||..+++....+. +|...|++|+|+|+|++|++|+.||.|+|
T Consensus 96 ~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~i 173 (420)
T 4gga_A 96 ILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173 (420)
T ss_dssp EEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEE
Confidence 345555556677899999975 6888775 9999999999999887665 57788999999999999999999999999
Q ss_pred EeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 355 WNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 355 wd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
||+. ++.+..+.+|...+.++.++ +.+|++|+.|+.+++||.... ..+..+.+|...+.++.|++++.++++++.|
T Consensus 174 Wd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D 251 (420)
T 4gga_A 174 WDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 251 (420)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecc
Confidence 9954 56788899999999988875 789999999999999999875 4556778999999999999999999999999
Q ss_pred CeEEEEeCCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEE--eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEee
Q 008050 433 ALARVWDLRTGR----SILALEGHVKPVLGISFSPNG-YHLATG--GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 433 g~I~iwd~~~~~----~~~~~~~~~~~I~si~~sp~g-~~l~tg--s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp 505 (579)
|.+++||..+++ .+..+..|...|.+++|+|++ .+++++ +.|++|++||+.+++++..+..| ..+.++.|++
T Consensus 252 ~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~ 330 (420)
T 4gga_A 252 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP 330 (420)
T ss_dssp SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET
T ss_pred ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC
Confidence 999999998765 356777899999999999955 555554 47999999999999999988776 5688899999
Q ss_pred CCCeEEEEEE-CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 506 QEGYFLVTGS-YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 506 ~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
++..++++++ .||.|+|||+.+++++..+.+|.+.|++++|+|+|++|+||+.||+|+||++.....
T Consensus 331 ~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 331 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 7555444333 689999999999999999999999999999999999999999999999999976443
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=326.10 Aligned_cols=285 Identities=20% Similarity=0.347 Sum_probs=247.6
Q ss_pred CCCC--CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-C
Q 008050 284 GDDR--PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-HTERATDVTFSPVSNHVATSSADRTARLWNTD-G 359 (579)
Q Consensus 284 gh~~--~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~ 359 (579)
+|.. .+.+++|++ +.+++++.||.|++||+.+++....+.. |...|.+++|+|++.+|++|+.||.|++|+.. +
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 4444 455666664 5678888999999999999998888776 88999999999999999999999999999954 5
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD-TGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~-~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
+.+..+.+|...|.+++|+ +++|++++.||.|++||+. .+.....+.+|...|.+++|+|++.+|++|+.||.|++|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 7788889999999999994 6799999999999999998 466677888999999999999999999999999999999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEe--CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE--
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNG-YHLATGG--EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT-- 513 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g-~~l~tgs--~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s-- 513 (579)
|+++++.+..+..|...|.+++|+|++ .++++|+ .|+.|++||+++++.+..+. +...|.+++|+++ +.+|++
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~~~ 322 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPH-SKEIMSTH 322 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSS-SSEEEEEE
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCC-CCeEEEEe
Confidence 999999999999999999999999966 5666655 79999999999999998886 4578999999997 666666
Q ss_pred EECCCEEEEEECCCCeEEE--EecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 514 GSYDMTVKVWSGRDFKLVK--SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
|+.||.|++||+.+++... .+.+|...|++++|+|+|++|++++.||.|++|++.+++...
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 4479999999999865544 467899999999999999999999999999999999877654
No 41
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-37 Score=315.58 Aligned_cols=254 Identities=19% Similarity=0.344 Sum_probs=232.9
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
.....+.+|.+.|.+++|++++++|++|+.||.|++||. .+..+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 456678899999999999999999999999999999994 5677888899999999999999999999999999999999
Q ss_pred CCCC----cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 008050 398 VDTG----VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE 473 (579)
Q Consensus 398 ~~~~----~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~ 473 (579)
+.++ .....+.+|...|.++.|++++ .+++++.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9875 3455677999999999999887 4889999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC--CCCcEEEEEEcCCCC
Q 008050 474 DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--HEAKVTSLDIHPDEQ 551 (579)
Q Consensus 474 Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~ 551 (579)
||.|++||++++.++..+..|...|.+++|+|+ +.+|++|+.||.|++||+++++.+..+.. +...|++++|+|+|+
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 999999999999999999999999999999996 78999999999999999999988877753 335799999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCCccc
Q 008050 552 SIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 552 ~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
+|++|+.||.|++||+.++....
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEECCCCeEEEEEcccCcEee
Confidence 99999999999999998776543
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-37 Score=314.92 Aligned_cols=285 Identities=23% Similarity=0.324 Sum_probs=255.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS---- 360 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~---- 360 (579)
|..+|.+++|+|||++++++..++.+.+|............+|...|.+++|++++++|++++ ||.|++|+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888888887776666666668999999999999999999999 999999996542
Q ss_pred eeEEEe--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008050 361 LLNTFQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV--ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 361 ~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~--~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
....+. .|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+++++++++++.||.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 333444 789999999999999999999999999999999887 5566778999999999999999999999999999
Q ss_pred EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC
Q 008050 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
+||+++++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...+.+++|+|+ +.+|++++.
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~-~~~l~~~~~ 244 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT-GEWLAVGME 244 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT-SSEEEEEET
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCC-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999998888775 5678999999996 788999999
Q ss_pred CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 517 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
+|.|++||+.+++.. .+..|...|++++|++++++|++++.||.|++|++.+++..
T Consensus 245 ~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999988765 67789999999999999999999999999999999887654
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=321.63 Aligned_cols=243 Identities=17% Similarity=0.256 Sum_probs=213.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEE----EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-C
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA----LKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-G 359 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~----l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~ 359 (579)
|..+|.+++|++++ .|++|+.||.|+|||+.+++.+.. +.+|.+.|++++|+|++++|++|+.||+|++||+. +
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999985 678999999999999998875543 45899999999999999999999999999999964 5
Q ss_pred CeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIAFHPD-GSLAASCGLDALA 435 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V~~l~~spd-g~~l~sg~~dg~I 435 (579)
+.+..+.+|...|.+++|++++. +|++++.|++|++||+++++....+. .+...+++++|+|+ +.+|++|+.||.|
T Consensus 160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 67888999999999999999885 78999999999999999998877653 45567999999994 5689999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
++||+++++.+..+.+|...|++++|+|+| ++|++|+.|++|+|||+++++.+ .+.+|.+.|++++|+|++..+|++|
T Consensus 240 ~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp EEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEE
Confidence 999999999999999999999999999987 57999999999999999888654 5789999999999999877889999
Q ss_pred ECCCEEEEEECCCCe
Q 008050 515 SYDMTVKVWSGRDFK 529 (579)
Q Consensus 515 s~dg~I~iwd~~~~~ 529 (579)
+.||+|++|++.+..
T Consensus 319 s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GWDHQVVHHVVPTEP 333 (344)
T ss_dssp ETTSCEEEEECCC--
T ss_pred cCCCeEEEEECCCCC
Confidence 999999999987654
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-38 Score=334.64 Aligned_cols=282 Identities=17% Similarity=0.243 Sum_probs=245.2
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee-EEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL-NTF 365 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~-~~~ 365 (579)
..+++++|+|+|++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++|+...... ..+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34568999999999999999999999999887776666655 4455567899999999999999999999766544 445
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS 445 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~ 445 (579)
.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|++++|+|++.+|++++.||.|++||+++++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 79999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred EEEEec---CCCCeEE---------------------EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-CCCCeEE
Q 008050 446 ILALEG---HVKPVLG---------------------ISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQ 500 (579)
Q Consensus 446 ~~~~~~---~~~~I~s---------------------i~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~~~~V~~ 500 (579)
+..+.. +...|.+ ++|+|+|.+|++|+.||.|++||+++++.+..+.. |...|.+
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 988875 3334444 45578999999999999999999999988877754 7889999
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCCe-EEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDFK-LVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
++|+|++..+|++|+.||.|++||+++++ ++..+.. |...|+++.| +++++|++++.||.|++|++...
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 99999855599999999999999999874 4666765 6677888855 57889999999999999999874
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-37 Score=354.41 Aligned_cols=296 Identities=24% Similarity=0.362 Sum_probs=271.6
Q ss_pred EeeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
.+...+.+|...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCC
Q 008050 357 T-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHP-DGSLAASCGLDA 433 (579)
Q Consensus 357 ~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg 433 (579)
. +++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| ++.+|++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 5 56778889999999999999999999999999999999999987 66677789999999999999 888999999999
Q ss_pred eEEEEeCCCCeEEEEEecCC-CCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 434 LARVWDLRTGRSILALEGHV-KPVLGISFSP--NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~-~~I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
.|++||++++.....+..+. ..+.+++|+| ++.+|++|+.||.|++||+++++.+..+..|...|.+++|+|+ +.+
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 242 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPI 242 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS-SSE
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-CCE
Confidence 99999999988887777655 8899999999 9999999999999999999999999999999999999999996 779
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCE-EEEEEcCCeEEEEEcCCCCcc
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS-IATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~-L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
|++++.||.|++||+.+++.+..+..|...+.+++|+|+|.. +++++.|+.+.+|++......
T Consensus 243 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT 306 (814)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCce
Confidence 999999999999999999999999999999999999999874 355555777999998765443
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-36 Score=325.51 Aligned_cols=287 Identities=21% Similarity=0.379 Sum_probs=257.3
Q ss_pred eecccCCCCCe-eEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 279 DCTESGDDRPL-SGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 279 ~~~~~gh~~~I-~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
...+.+|...+ .++.| ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34566888875 55555 57899999999999999999999999999999999999999987 9999999999999996
Q ss_pred C-CCeeEEEecccCCeEEEEEe--cCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEecCC
Q 008050 358 D-GSLLNTFQGHLDRLARMAFH--PSGKYLGTTSFDKTWRLWDVDTGVE-----------------------LLLQEGHS 411 (579)
Q Consensus 358 ~-~~~~~~~~~h~~~I~~l~~s--p~~~~l~s~s~dg~I~lwd~~~~~~-----------------------~~~~~~~~ 411 (579)
. ++.+..+.+|...|.+++|+ +++.+|++++.||+|++||+.++.. .....+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 5 56778888999999999998 5778999999999999999987652 44566888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008050 412 RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 412 ~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
..+.++ +++++++++|+.||.|++||+++++.+..+.+|...|.+++|++++.+|++|+.||.|++||+++++.+..+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 888877 567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 492 ~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
..|...|.++.|+ +.+|++++.||.|++||+.++.....+. |...+..++|++++++|++|+ ||.|++||+.+++
T Consensus 349 ~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 349 QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp CCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred eCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 9999999999997 4689999999999999999988776664 666788889999999999998 9999999999988
Q ss_pred cccc
Q 008050 572 DEHA 575 (579)
Q Consensus 572 ~~~~ 575 (579)
....
T Consensus 424 ~~~~ 427 (464)
T 3v7d_B 424 LVHA 427 (464)
T ss_dssp EEES
T ss_pred EEeh
Confidence 7654
No 47
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-37 Score=316.60 Aligned_cols=279 Identities=11% Similarity=0.114 Sum_probs=250.3
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe---eEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEe
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ---KFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWN 356 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd 356 (579)
...+|...|++++|+|++++|++|+.||.|+||++.++. ....+.+|...|.+++|++++. +|++|+.||.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 455899999999999999999999999999999998876 3455668999999999999999 999999999999999
Q ss_pred C-CCCeeEEEec--ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---------CcEEEEEecCCCCeEEEEEcCCCC
Q 008050 357 T-DGSLLNTFQG--HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT---------GVELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 357 ~-~~~~~~~~~~--h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~---------~~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
+ .+.....+.+ |...|.+++|++ +++|++++.|+.|++||+.+ ++.+..+. |...|.+++|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 9 8888888899 999999999999 99999999999999999987 55444443 88899999999987
Q ss_pred EEEEEeCCCeEEEEeCCC-Ce--EEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC------ceeEEEeCC
Q 008050 425 LAASCGLDALARVWDLRT-GR--SILALEGHVKPVLGISFSP-NGYHLATGGEDNTCRIWDLRKR------KSLYVIPAH 494 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~-~~--~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I~iwDl~~~------~~~~~~~~~ 494 (579)
+++++.+|.|++||+++ +. .......|...|.+++|+| ++.+|++++.||.|++||++.. +....+..|
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999999998 54 3344556888999999999 9999999999999999999887 788888888
Q ss_pred CC---------CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC-CCcEEEEEEcCCCCEEEEEEcCCe-EE
Q 008050 495 SN---------LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH-EAKVTSLDIHPDEQSIATVSHDRW-IK 563 (579)
Q Consensus 495 ~~---------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s~Dg~-I~ 563 (579)
.. .|.+++|+|+ +.+|++|+.||.|++||+.+++.+..+.+| ...|++++ +++++|++++.||. .+
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~ 318 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKT 318 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTT-TCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred cccccccccceeEEEEEEcCC-CCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccc
Confidence 65 8999999996 778999999999999999999999999998 99999999 99999999999998 44
Q ss_pred EEE
Q 008050 564 LWS 566 (579)
Q Consensus 564 iW~ 566 (579)
.|.
T Consensus 319 ~~~ 321 (342)
T 1yfq_A 319 NAA 321 (342)
T ss_dssp CSS
T ss_pred ccc
Confidence 443
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.5e-37 Score=316.16 Aligned_cols=296 Identities=19% Similarity=0.269 Sum_probs=233.2
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC----eeEEEEeCCCCCeEEEEEcc--CCCEEEEEeCCCcE
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL----QKFSALKGHTERATDVTFSP--VSNHVATSSADRTA 352 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~sp--~~~~l~s~s~dg~I 352 (579)
...+.+|...|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|++ ++.+|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3456799999999999999999999999999999999876 46677889999999999999 69999999999999
Q ss_pred EEEeCCC----------CeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCcEEEEE-------------
Q 008050 353 RLWNTDG----------SLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVELLLQ------------- 407 (579)
Q Consensus 353 ~iwd~~~----------~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~~~~~~------------- 407 (579)
++||+.. +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 9999655 447788899999999999999 999999999999999999887543222
Q ss_pred ecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCeE--EEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEE
Q 008050 408 EGHSRSVYGIAFHPD---GSLAASCGLDALARVWDLRTGRS--ILALEGHVKPVLGISFSPNG----YHLATGGEDNTCR 478 (579)
Q Consensus 408 ~~~~~~V~~l~~spd---g~~l~sg~~dg~I~iwd~~~~~~--~~~~~~~~~~I~si~~sp~g----~~l~tgs~Dg~I~ 478 (579)
..|...+.++.|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++|+.||.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 157788999999997 89999999999999998887765 67778899999999999998 8999999999999
Q ss_pred EEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE----EECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEE
Q 008050 479 IWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT----GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 479 iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s----gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 554 (579)
+||++.+........+...+....+.+. ..++.. +...+.+.+|+....+.+..+.+|...|++++|+|++++|+
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSAD-VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcc-cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 9999877655444333333333333332 222222 23445567777777788999999999999999999999999
Q ss_pred EEEcCCeEEEEEcCCCCcccc
Q 008050 555 TVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
+|+.||.|+||++.+++....
T Consensus 323 s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EEETTSCEEEEEECTTSCEEE
T ss_pred EecCCCcEEEEecCcCcchhh
Confidence 999999999999998776544
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.2e-37 Score=324.00 Aligned_cols=281 Identities=19% Similarity=0.265 Sum_probs=244.8
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTF 365 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~ 365 (579)
..+....|++++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||+. ++.+..+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 344555789999999999999999999999999988888999999999999999999999999999999964 5678889
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec---CCCCeEEE---------------------EEcC
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG---HSRSVYGI---------------------AFHP 421 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~---~~~~V~~l---------------------~~sp 421 (579)
.+|...|.+++|+|++++|++++.||+|++||+.+++.+..+.. +...+.++ +|+|
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999988887764 33445444 4578
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEe-cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce-eEEEeC-CCCC
Q 008050 422 DGSLAASCGLDALARVWDLRTGRSILALE-GHVKPVLGISFSPNGY-HLATGGEDNTCRIWDLRKRKS-LYVIPA-HSNL 497 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~~~~I~si~~sp~g~-~l~tgs~Dg~I~iwDl~~~~~-~~~~~~-~~~~ 497 (579)
++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|+.||.|++||+++++. +..+.. |...
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 99999999999999999999998877775 4788999999999998 999999999999999998754 677766 6777
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCC---------eEEEEecCCCCcEEEEEEcCCCC---EEEEEEcCCeEEEE
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF---------KLVKSLSGHEAKVTSLDIHPDEQ---SIATVSHDRWIKLW 565 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~L~s~s~Dg~I~iW 565 (579)
|.++.+. + +.+|++++.||.|++|++... .....+..|.+.|.+++|+|+++ .|++++.+|.+.+|
T Consensus 338 v~~~~~~-~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 338 INNVYFA-A-GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EEEEEEE-T-TEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred ceEEEeC-C-CCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 8888655 4 689999999999999998762 22234567888999999999999 78888889999999
Q ss_pred EcCC
Q 008050 566 STRN 569 (579)
Q Consensus 566 ~~~~ 569 (579)
++.+
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9875
No 50
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=328.30 Aligned_cols=280 Identities=18% Similarity=0.331 Sum_probs=238.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-----------eEEEEeCCC------------CCeEEEEEccCC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-----------KFSALKGHT------------ERATDVTFSPVS 340 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-----------~~~~l~~h~------------~~V~~l~~sp~~ 340 (579)
.|.+.|++++|+|+|++|++|+.||.|+||++.++. ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998877 577889998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEeCCCCee----------------------------------------EE-EecccCCeEEEEE
Q 008050 341 --NHVATSSADRTARLWNTDGSLL----------------------------------------NT-FQGHLDRLARMAF 377 (579)
Q Consensus 341 --~~l~s~s~dg~I~iwd~~~~~~----------------------------------------~~-~~~h~~~I~~l~~ 377 (579)
.+|++++.||.|++|++..... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999654221 12 3579999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEECCCCc-EEEE-------EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeE---
Q 008050 378 HPSGKYLGTTSFDKTWRLWDVDTGV-ELLL-------QEGHSRSVYGIAFHPDG-SLAASCGLDALARVWDLRTGRS--- 445 (579)
Q Consensus 378 sp~~~~l~s~s~dg~I~lwd~~~~~-~~~~-------~~~~~~~V~~l~~spdg-~~l~sg~~dg~I~iwd~~~~~~--- 445 (579)
+|++++|++| .|+.|++||+.+.. .+.. +.+|...|++++|+|++ .+|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 79999999998543 3332 45789999999999998 9999999999999999999887
Q ss_pred -EEEEecCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeCCCCC--------------
Q 008050 446 -ILALEGHVK------------PVLGISFSPNGYHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNL-------------- 497 (579)
Q Consensus 446 -~~~~~~~~~------------~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~-------------- 497 (579)
+..+..|.. .|.+++|+|+|.+|++++. +.|++||+++ ++++..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 8999999999999999998 9999999997 8888888888542
Q ss_pred -eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec---------------------------------CCCCcEEE
Q 008050 498 -ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS---------------------------------GHEAKVTS 543 (579)
Q Consensus 498 -V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~---------------------------------~h~~~V~~ 543 (579)
+..++|+|+ +.+|++|+.||.|++||+.+++.+. +. .+...|.+
T Consensus 344 ~~~~~~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 344 DKFECCWNGS-DSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp CCCCEEECTT-SSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cceEEEECCC-CCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 234899997 7888999999999999999988763 22 23456899
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
++|+|++++|++++.++ +++|.-+
T Consensus 422 ~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEECSSSSEEEEECSSC-EEEEECC
T ss_pred EEECCCCCEEEEEecce-eeeeccc
Confidence 99999999999998876 8888754
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-36 Score=307.34 Aligned_cols=250 Identities=22% Similarity=0.392 Sum_probs=219.5
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CeeEEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEE
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG---SLLNTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lw 396 (579)
..+.+|.+.|.+++|+++|++|++|+.||+|+||++.+ +.+..+.+|.+.|.+++|++ ++++|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 35678999999999999999999999999999999753 56788999999999999986 38999999999999999
Q ss_pred ECCCCc--EEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCC------
Q 008050 397 DVDTGV--ELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSPN------ 464 (579)
Q Consensus 397 d~~~~~--~~~~~~~~~~~V~~l~~spd--g~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~------ 464 (579)
|+.++. .+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 45566789999999999997 8899999999999999998763 24667889999999999997
Q ss_pred -------CCEEEEEeCCCcEEEEECCCCc----eeEEEeCCCCCeEEEEEeeCC--CeEEEEEECCCEEEEEECCCCe--
Q 008050 465 -------GYHLATGGEDNTCRIWDLRKRK----SLYVIPAHSNLISQVKFEPQE--GYFLVTGSYDMTVKVWSGRDFK-- 529 (579)
Q Consensus 465 -------g~~l~tgs~Dg~I~iwDl~~~~----~~~~~~~~~~~V~~v~~sp~~--~~~l~sgs~dg~I~iwd~~~~~-- 529 (579)
+++|++|+.|++|++||++++. ....+.+|...|.+++|+|++ +.+|++++.|++|++||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998766 567788999999999999974 5899999999999999987642
Q ss_pred -EEEEe--cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 530 -LVKSL--SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 530 -~~~~l--~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
....+ ..|...|.+++|+|+|++|++++.||.|+||+....+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 22233 5688899999999999999999999999999987544
No 52
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.2e-37 Score=324.83 Aligned_cols=277 Identities=26% Similarity=0.480 Sum_probs=249.0
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCC
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGS 360 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~ 360 (579)
..+|...|.++.| ++++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||. .++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3467788999887 7999999999999999999999999999999999999999 7899999999999999995 467
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE---EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL---LLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~---~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
.+..+.+|...|.++.|+ +.++++|+.||.|++||+.++... ....+|...|.+++| +++++++|+.||.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 888899999999999997 569999999999999999987654 566789999999999 6789999999999999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
||+++++.+..+.+|...|.++.| ++.+|++|+.||.|++||+++++++..+..|...|.++.|+ +.+|++|+.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC---SSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEec---CCEEEEEeCC
Confidence 999999999999999999999999 46799999999999999999999999999999999999993 6789999999
Q ss_pred CEEEEEECCCCe---------EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 518 MTVKVWSGRDFK---------LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 518 g~I~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
|.|++||+.++. ++..+.+|.+.|++++| ++.+|++|+.||.|++|++.+....
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 999999987665 88899999999999999 6889999999999999999876543
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.7e-36 Score=318.47 Aligned_cols=283 Identities=29% Similarity=0.515 Sum_probs=258.0
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD- 358 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~- 358 (579)
..+.+|...|.. +++++|++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +++|++|+.||.|++||..
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 345688887543 255569999999999999999999999999999999999999998 6799999999999999954
Q ss_pred CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 359 GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 359 ~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
++.+..+.+|...|.++.|+ ++++++++.||+|++||+.+++.+..+.+|...|.++.| ++.++++|+.||.|++|
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW 264 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEE
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEE
Confidence 56778889999999999996 678999999999999999999999999999999999999 67899999999999999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM 518 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg 518 (579)
|+++++.+..+.+|...|.+++| ++.+|++|+.||.|++||+++++.+..+..|...+.++.++ +.+|++|+.||
T Consensus 265 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg 339 (445)
T 2ovr_B 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADS 339 (445)
T ss_dssp EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTS
T ss_pred ECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCC
Confidence 99999999999999999999999 78899999999999999999999999999999999988885 45899999999
Q ss_pred EEEEEECCCCeEEEEecC---CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 519 TVKVWSGRDFKLVKSLSG---HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 519 ~I~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
.|++||+.+++.+..+.+ |...|++++|+ +++|++|+.||.|++|++.+++....+
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 999999999999999986 88899999996 689999999999999999988766543
No 54
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-36 Score=310.37 Aligned_cols=255 Identities=18% Similarity=0.324 Sum_probs=232.0
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
+....+.+|...|.+++|+|++.+|++|+.||+|++|| ..++....+..|...|.+++|+|+|.+|++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 44567889999999999999999999999999999999 45677788888999999999999999999999999999999
Q ss_pred CCCC------cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC--CCCEEE
Q 008050 398 VDTG------VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP--NGYHLA 469 (579)
Q Consensus 398 ~~~~------~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp--~g~~l~ 469 (579)
+... .....+.+|...|.++.|++++..|++++.||.|++||+++++.+..+.+|...|.+++|++ +|++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 8653 23455668999999999999999999999999999999999999999999999999999988 578999
Q ss_pred EEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC--CCcEEEEEEc
Q 008050 470 TGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH--EAKVTSLDIH 547 (579)
Q Consensus 470 tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~s 547 (579)
+|+.||.|++||+++++++..+..|...|++++|+|+ +.+|++|+.|++|++||++..+.+..+..+ ...+++++|+
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9999999999999999999999999999999999996 789999999999999999999888777543 3578999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 548 PDEQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 548 ~dg~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
++|++|++|+.||.|++||+.++....
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEE
Confidence 999999999999999999998776543
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.6e-36 Score=301.92 Aligned_cols=258 Identities=29% Similarity=0.544 Sum_probs=234.6
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 318 LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
......+.+|...|++++|+|++++|++|+.||.|++|+. +++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 4556678899999999999999999999999999999995 567788889999999999999999999999999999999
Q ss_pred ECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008050 397 DVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNT 476 (579)
Q Consensus 397 d~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~ 476 (579)
|+.+++.+..+.+|...|.++.|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|++++.+|++|+.||.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEEe-CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEE--EEE-cCCCCE
Q 008050 477 CRIWDLRKRKSLYVIP-AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTS--LDI-HPDEQS 552 (579)
Q Consensus 477 I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~--l~~-s~dg~~ 552 (579)
|++||+++++.+..+. .+...+..++|+|+ +.+|++++.||.|++||+.+++.+..+.+|...+.. ..| .+++.+
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence 9999999998887765 45678999999996 788999999999999999999999999888765332 233 467889
Q ss_pred EEEEEcCCeEEEEEcCCCCccccc
Q 008050 553 IATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 553 L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
|++|+.||.|++||+.+++....+
T Consensus 252 l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp EEECCTTSCEEEEETTTCCEEEEE
T ss_pred EEEECCCCEEEEEECCCchhhhhh
Confidence 999999999999999988765543
No 56
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-36 Score=361.68 Aligned_cols=291 Identities=24% Similarity=0.430 Sum_probs=263.5
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DG 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~ 359 (579)
...+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||. ++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999995 56
Q ss_pred CeeEEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
+.+..+.+|...|.+++|++ ++.++++++.||.|++||+.++.....+.+|...|++++|+|++.++++|+.||.|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 78889999999999999999 5558999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEEe-------------------------------------------------------cCCCCeEEEEEc
Q 008050 438 WDLRTGRSILALE-------------------------------------------------------GHVKPVLGISFS 462 (579)
Q Consensus 438 wd~~~~~~~~~~~-------------------------------------------------------~~~~~I~si~~s 462 (579)
||+++++....+. +|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 9998775543321 567789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC----------------
Q 008050 463 PNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR---------------- 526 (579)
Q Consensus 463 p~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~---------------- 526 (579)
|++.++++++.||.|++||+.++..+..+.+|...|.+++|+|+ +.+|++++.||.|++|++.
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd-g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD-GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 99999999999999999999999999999999999999999996 6778888888888888732
Q ss_pred ---------------------------------------------------------------CCeEEEEecCCCCcEEE
Q 008050 527 ---------------------------------------------------------------DFKLVKSLSGHEAKVTS 543 (579)
Q Consensus 527 ---------------------------------------------------------------~~~~~~~l~~h~~~V~~ 543 (579)
+++.+..+.+|...|++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 33344556679999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
++|+++|++|++++.||.|++|++.++..
T Consensus 1009 l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 99999999999999999999999987654
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=297.17 Aligned_cols=279 Identities=23% Similarity=0.396 Sum_probs=238.6
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe--CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK--GHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLN 363 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~ 363 (579)
-.+++++||+++ +|++|. |++|+|||+.+++.+..+. +|...|++++|++++++|++|+.||.|++|+.. ++.+.
T Consensus 26 ~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 26 YYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp TTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 346889999875 777765 9999999999999888775 577889999999999999999999999999954 56778
Q ss_pred EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 364 TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
.+.+|...+.++.+ ++.++++++.++.+++|+.... ..+..+.+|...+.++.|++++++|++++.||.|++||+++
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 88999988877655 4789999999999999999876 44566779999999999999999999999999999999988
Q ss_pred Ce----EEEEEecCCCCeEEEEEcCCCCE-E--EEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE-E
Q 008050 443 GR----SILALEGHVKPVLGISFSPNGYH-L--ATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT-G 514 (579)
Q Consensus 443 ~~----~~~~~~~~~~~I~si~~sp~g~~-l--~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s-g 514 (579)
++ .......+.+.|.++.+++++.. + ++++.++.|++||.+......... +...+..+.|++.+..++++ |
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEEC
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEE
Confidence 65 34556678889999999996543 3 356688999999998887766654 55778999999975554443 3
Q ss_pred ECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 515 SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 515 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+.||.|++||+.+++++..+.+|.+.|++++|+|+|++|+|||.||+|+|||+.+.
T Consensus 261 ~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 37999999999999999999999999999999999999999999999999998653
No 58
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-38 Score=340.30 Aligned_cols=284 Identities=9% Similarity=0.070 Sum_probs=234.3
Q ss_pred CCCCeeEEEEcCCC---------CEEEEEe-------------------cCCeEEEEeCCCCeeE----EEEeCCCCCeE
Q 008050 285 DDRPLSGCSYSHDG---------NLLATSS-------------------LSGVVKIWSMPRLQKF----SALKGHTERAT 332 (579)
Q Consensus 285 h~~~I~~~~~spdg---------~~latgs-------------------~dg~I~iwd~~~~~~~----~~l~~h~~~V~ 332 (579)
+...|.+++|+|++ ++||+|+ .||.|+||++.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 46789999999986 6777744 6789999999876542 34667889999
Q ss_pred EEEEccC------CCEEEEEeCCCcEEEEeCCCCe------------eEEEecccCCeEEEEEecCCCEEEEEeCCCeEE
Q 008050 333 DVTFSPV------SNHVATSSADRTARLWNTDGSL------------LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWR 394 (579)
Q Consensus 333 ~l~~sp~------~~~l~s~s~dg~I~iwd~~~~~------------~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~ 394 (579)
+++|+|+ +.+|++++.||+|++|++.... ...+.+|...|++++|++++ .|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 9999996 5799999999999999975431 23678899999999999864 899999999999
Q ss_pred EEECCCCc-EEEEEecCCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEecCCC--CeEEEEEcCCCCEE
Q 008050 395 LWDVDTGV-ELLLQEGHSRSVYGI--AFHPDG-SLAASCGLDALARVWDLRTGRSILALEGHVK--PVLGISFSPNGYHL 468 (579)
Q Consensus 395 lwd~~~~~-~~~~~~~~~~~V~~l--~~spdg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~I~si~~sp~g~~l 468 (579)
+||++++. ....+.+|...|+++ .|++++ .+|++|+.||+|+|||+++++....+.+|.. .|.+++|+|++..|
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 99998764 445577999999999 568887 8999999999999999999887777777653 48899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC---------------------
Q 008050 469 ATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD--------------------- 527 (579)
Q Consensus 469 ~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~--------------------- 527 (579)
++++.|++|++||++++.++..+.+|.+.|++++|+|+ +.+|++|+.||+|++||...
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~-g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v 449 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL-HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKW 449 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS-CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEEC
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC-CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEe
Confidence 99999999999999999998899999999999999997 77899999999999987421
Q ss_pred -----------------------CeEEEEecCCCCcEEEEEEcCCCC---EEEEEEcCCeEEEEEcCCC
Q 008050 528 -----------------------FKLVKSLSGHEAKVTSLDIHPDEQ---SIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 528 -----------------------~~~~~~l~~h~~~V~~l~~s~dg~---~L~s~s~Dg~I~iW~~~~~ 570 (579)
+.++..+.+|...|.+++|+|++. +|++|+.||.|+||++.-.
T Consensus 450 ~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 450 DYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp BCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 112334556888999999999954 8999999999999998643
No 59
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.3e-36 Score=304.43 Aligned_cols=246 Identities=21% Similarity=0.411 Sum_probs=226.5
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
..+.+|...|.+++|+++|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++++.+|++|+.||+|++||+.+
T Consensus 59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEecccCCeEEEEEecC------CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 360 SLLNTFQGHLDRLARMAFHPS------GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~------~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
..+..+.+|...|.++.|+|. +.+|++++.|+.|++||+.+++....+.+|...|++++|+|+|++|++|+.||
T Consensus 139 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999985 44899999999999999999998888899999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC--------CCCCeEEEEEee
Q 008050 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA--------HSNLISQVKFEP 505 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~--------~~~~V~~v~~sp 505 (579)
.|++||+++++.+..+..+ ..|.+++|+|++.+|++++.+ .+++|++.....+..+.. |...+.+++|+|
T Consensus 219 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp EEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred eEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence 9999999999999888755 579999999999999988765 599999988777766643 356789999999
Q ss_pred CCCeEEEEEECCCEEEEEECCCC
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~ 528 (579)
+ +.+|++|+.||.|++||+.+.
T Consensus 297 d-g~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 297 D-GQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp T-SSEEEEEETTSCEEEEEEEEC
T ss_pred C-CCEEEEeecCceEEEEEEeec
Confidence 7 889999999999999997653
No 60
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.1e-37 Score=317.43 Aligned_cols=280 Identities=16% Similarity=0.173 Sum_probs=228.3
Q ss_pred CCCeeEEEEcCCCCEEEEEecC-------CeEEEEeCCCCee----------EEEEeCCCCCeEEEEEccCCCEEEEEe-
Q 008050 286 DRPLSGCSYSHDGNLLATSSLS-------GVVKIWSMPRLQK----------FSALKGHTERATDVTFSPVSNHVATSS- 347 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~d-------g~I~iwd~~~~~~----------~~~l~~h~~~V~~l~~sp~~~~l~s~s- 347 (579)
.-||+|++|+|||++|++|+.+ +.|++|++..... ...+.+|...|.+++++ ++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999754 3599999875431 12456788899988775 46676654
Q ss_pred ----------CCCcEEEEeCCC--CeeEEE--------ecccCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCcEEE
Q 008050 348 ----------ADRTARLWNTDG--SLLNTF--------QGHLDRLARMAFHPSGKYLGTTS--FDKTWRLWDVDTGVELL 405 (579)
Q Consensus 348 ----------~dg~I~iwd~~~--~~~~~~--------~~h~~~I~~l~~sp~~~~l~s~s--~dg~I~lwd~~~~~~~~ 405 (579)
.|+.+++|+++. ..+... ..+...+.+++|+|||+++++++ .|++|++||+.+++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 467899998533 222211 12345688999999999987554 68999999999999888
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC----cEEE
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYHLATGGEDN----TCRI 479 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~Dg----~I~i 479 (579)
.+. |...|++++|+|||+++++++.+ .+.+|+..+++.+.. ...|...|.+++|+|+|.++++++.|+ .+++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 774 77889999999999999999854 566777777766543 356788899999999999999999887 6888
Q ss_pred EECCCCce----eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEE
Q 008050 480 WDLRKRKS----LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 480 wDl~~~~~----~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~ 554 (579)
||+..... ...+..|...|++++|+|+ +.+|++|+.|+.|+|||+.+++++..+ .+|...|++++|+|||++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 99876653 3467789999999999997 889999999999999999999999885 78999999999999999999
Q ss_pred EEEcCCeEEEEEcCCC
Q 008050 555 TVSHDRWIKLWSTRNK 570 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~ 570 (579)
+||.|++|+||++...
T Consensus 329 S~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 329 SVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSEEEEEECCTT
T ss_pred EEeCCCeEEEEEcCCC
Confidence 9999999999999653
No 61
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=310.10 Aligned_cols=252 Identities=25% Similarity=0.476 Sum_probs=222.4
Q ss_pred CeeEEEEeCCCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee----EEEecccCCeEEEEEecCCCEEEEEeCCCe
Q 008050 318 LQKFSALKGHTE-RATDVTFSPVSNHVATSSADRTARLWNTDGSLL----NTFQGHLDRLARMAFHPSGKYLGTTSFDKT 392 (579)
Q Consensus 318 ~~~~~~l~~h~~-~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~ 392 (579)
...+..+.+|.. .|.+++|+|++++|++|+.||.|+||+..+... ....+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456677889988 999999999999999999999999999765431 223679999999999999999999999999
Q ss_pred EEEEECCCCc--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEecCCCCeEEEEEcCCCCE
Q 008050 393 WRLWDVDTGV--ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR---SILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 393 I~lwd~~~~~--~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~---~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
+++||+.++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .+..+.+|...|.+++|+|++.+
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9999998764 466778999999999999999999999999999999998763 46678899999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCc--eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC---------------CCeE
Q 008050 468 LATGGEDNTCRIWDLRKRK--SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR---------------DFKL 530 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~~~~--~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~---------------~~~~ 530 (579)
|++|+.|+.|++||++.+. +...+.+|...|.+++|+|+ +.+|++|+.||+|++|+.. .+++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 9999999999999998775 45678899999999999996 7899999999999999852 1245
Q ss_pred EEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 531 VKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 531 ~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
+..+.+ |...|.+++|++++..|++++.|+.|++|+....
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 556655 8889999999999999999999999999998754
No 62
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-36 Score=303.71 Aligned_cols=246 Identities=18% Similarity=0.324 Sum_probs=215.6
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--CeeEEEEeCCCCCeEEEEEccC--CCEEEEEeCCCcEEEE
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR--LQKFSALKGHTERATDVTFSPV--SNHVATSSADRTARLW 355 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~sp~--~~~l~s~s~dg~I~iw 355 (579)
..+.+|...|.+++|+++|++|++|+.||.|+|||+.+ .+.+..+.+|.+.|.+++|+++ +++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 34678999999999999999999999999999999974 4678889999999999999863 8999999999999999
Q ss_pred eCCCC---eeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCeEEEEEcCC------
Q 008050 356 NTDGS---LLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGV--ELLLQEGHSRSVYGIAFHPD------ 422 (579)
Q Consensus 356 d~~~~---~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~--~~~~~~~~~~~V~~l~~spd------ 422 (579)
|.... .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 97643 55677889999999999997 8899999999999999998763 23556789999999999997
Q ss_pred -------CCEEEEEeCCCeEEEEeCCCCe----EEEEEecCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCc--
Q 008050 423 -------GSLAASCGLDALARVWDLRTGR----SILALEGHVKPVLGISFSPNG---YHLATGGEDNTCRIWDLRKRK-- 486 (579)
Q Consensus 423 -------g~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~~I~si~~sp~g---~~l~tgs~Dg~I~iwDl~~~~-- 486 (579)
+++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.|++|+|||++...
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5699999999999999998865 567788999999999999984 899999999999999998643
Q ss_pred -eeEEE--eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 487 -SLYVI--PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 487 -~~~~~--~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
....+ ..|...|.+++|+|+ +.+|++++.||.|++|+..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~-g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSS-SCCEEEEETTSCEEEEEEC
T ss_pred cceeeeecccCCCcEEEEEECCC-CCEEEEEcCCCcEEEEEEC
Confidence 12233 457788999999997 7889999999999999975
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.1e-35 Score=313.36 Aligned_cols=280 Identities=25% Similarity=0.451 Sum_probs=258.5
Q ss_pred eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
......+|...|.+++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ ++.|++|+.||.|++||.
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 334567899999999998 6799999999999999999999999999999999999996 578999999999999995
Q ss_pred C-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008050 358 D-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 358 ~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
. ++.+..+.+|...|.++.| +++++++++.||.|++||+.+++.+..+.+|...|.++.| ++.++++|+.||.|+
T Consensus 227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~ 302 (445)
T 2ovr_B 227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302 (445)
T ss_dssp SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence 4 6778889999999999999 7889999999999999999999999999999999999999 788999999999999
Q ss_pred EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC---CCCCeEEEEEeeCCCeEEEE
Q 008050 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA---HSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~---~~~~V~~v~~sp~~~~~l~s 513 (579)
+||+++++.+..+.+|...+.++.++ +.+|++|+.||.|++||+++++.+..+.. |...|.++.|+ +.+|++
T Consensus 303 i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s 377 (445)
T 2ovr_B 303 VWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVIT 377 (445)
T ss_dssp EEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEE
T ss_pred EEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEE
Confidence 99999999999999999999998884 66999999999999999999999999986 78889999995 568999
Q ss_pred EECCCEEEEEECCCCeEEEEe-----cCCCCcEEEEEEcCCCCEEEEEEcCCe----EEEEEcCCC
Q 008050 514 GSYDMTVKVWSGRDFKLVKSL-----SGHEAKVTSLDIHPDEQSIATVSHDRW----IKLWSTRNK 570 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~l~~s~dg~~L~s~s~Dg~----I~iW~~~~~ 570 (579)
|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++.+|++|+.||+ |.+||+...
T Consensus 378 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999999999888 478889999999999999999999998 999999764
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-35 Score=328.35 Aligned_cols=287 Identities=18% Similarity=0.200 Sum_probs=264.6
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC----eeEEEEeCCCCC-eEEEEEcc--CCCEEEEEeCCCcEE
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL----QKFSALKGHTER-ATDVTFSP--VSNHVATSSADRTAR 353 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~----~~~~~l~~h~~~-V~~l~~sp--~~~~l~s~s~dg~I~ 353 (579)
....|...|.+++|+|+|++|++++ ++.|+||++.++ +....+.+|... |++++|+| ++++|++|+.||.|+
T Consensus 13 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 4457899999999999999999998 899999999998 899999999999 99999999 999999999999999
Q ss_pred EEeCC---------CCeeEEEecccCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEEecCCCCeEEEEEc
Q 008050 354 LWNTD---------GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD----KTWRLWDVDTGVELLLQEGHSRSVYGIAFH 420 (579)
Q Consensus 354 iwd~~---------~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d----g~I~lwd~~~~~~~~~~~~~~~~V~~l~~s 420 (579)
+|++. ......+..|...|.+++|+|++++|++++.+ +.|++|| .+..+..+.+|...|++++|+
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC
Confidence 99973 35677788899999999999999999999988 6888888 667788888999999999999
Q ss_pred CCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE-e--
Q 008050 421 PDGS-LAASCGLDALARVWDLRTGRSILALEGHVK---PVLGISFSPN-GYHLATGGEDNTCRIWDLRKRKSLYVI-P-- 492 (579)
Q Consensus 421 pdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~~~~~~~-~-- 492 (579)
|++. ++++++.||.|++||+.+++.+..+..|.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence 9998 899999999999999999999999999999 9999999999 999999999999999999999999998 6
Q ss_pred -CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC----CCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 493 -AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH----EAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 493 -~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.|...|.++.|+ + +.+|++++.||.|++||+.+++.+..+..+ ...+.++.|+ ++++|++++.||.|++|++
T Consensus 250 ~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 250 EPVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp BCCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred cccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 899999999999 5 889999999999999999999999998876 3678889886 8899999999999999999
Q ss_pred CCCCcc
Q 008050 568 RNKGDE 573 (579)
Q Consensus 568 ~~~~~~ 573 (579)
.++...
T Consensus 327 ~~~~~~ 332 (615)
T 1pgu_A 327 GHDEVL 332 (615)
T ss_dssp TEEEEE
T ss_pred CCCcEE
Confidence 875443
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=304.70 Aligned_cols=252 Identities=26% Similarity=0.389 Sum_probs=215.3
Q ss_pred CCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CeeEEE-ec-ccCCeEEEEEecCCCEEEEEeCC
Q 008050 316 PRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG---SLLNTF-QG-HLDRLARMAFHPSGKYLGTTSFD 390 (579)
Q Consensus 316 ~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---~~~~~~-~~-h~~~I~~l~~sp~~~~l~s~s~d 390 (579)
.+.+.+..+.+|.+.|.+++|+++ +|++|+.||.|++|++.. .....+ .+ |...|.+++|+|++++|++++.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345677889999999999999986 999999999999999765 234445 34 99999999999999999999999
Q ss_pred CeEEEEECCC-------CcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CeEEEEEecCCCCeEEE
Q 008050 391 KTWRLWDVDT-------GVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT----GRSILALEGHVKPVLGI 459 (579)
Q Consensus 391 g~I~lwd~~~-------~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~----~~~~~~~~~~~~~I~si 459 (579)
++|++||+.. ...+..+.+|...|++++|+|++++|++|+.|+.|++||++. .+.+..+.+|...|.++
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 9999999853 345667789999999999999999999999999999999953 25677889999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEeCCCCCeEEEEEeeCC-CeEEEEEECCCEEEEEECCCC--------
Q 008050 460 SFSPNGYHLATGGEDNTCRIWDLRKR--KSLYVIPAHSNLISQVKFEPQE-GYFLVTGSYDMTVKVWSGRDF-------- 528 (579)
Q Consensus 460 ~~sp~g~~l~tgs~Dg~I~iwDl~~~--~~~~~~~~~~~~V~~v~~sp~~-~~~l~sgs~dg~I~iwd~~~~-------- 528 (579)
+|+|++.+|++|+.|++|++||++++ +++..+.+|...|.++.|+|++ +.+|++|+.|++|++||+..+
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 99999999999999999999998776 6788899999999999999964 468999999999999998654
Q ss_pred eEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 529 KLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 529 ~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
.+...+.+ |...|++++|++++ +|++++.||.|++|+..++
T Consensus 240 ~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 240 VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 45556655 89999999999655 8999999999999998765
No 66
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=307.43 Aligned_cols=289 Identities=19% Similarity=0.231 Sum_probs=249.1
Q ss_pred EeeecccCCCCCeeEEEEcCC---CCEEEEEecCCeEEEEeCCC-CeeE-EEEeCCCCCeEEEEEccCCCEEEEEeCCCc
Q 008050 277 YLDCTESGDDRPLSGCSYSHD---GNLLATSSLSGVVKIWSMPR-LQKF-SALKGHTERATDVTFSPVSNHVATSSADRT 351 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spd---g~~latgs~dg~I~iwd~~~-~~~~-~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~ 351 (579)
.......+|...|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 344567899999999999999 69999999999999999987 5554 778899999999999999999999999999
Q ss_pred EEEEeCCCCeeEEEecccCCeEEEEE--ecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 008050 352 ARLWNTDGSLLNTFQGHLDRLARMAF--HPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC 429 (579)
Q Consensus 352 I~iwd~~~~~~~~~~~h~~~I~~l~~--sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg 429 (579)
|++||+.......+..|...|.+++| ++++.+|++++.||.|++||+.+++.+..+..+. .+.++.+.. ..++++
T Consensus 110 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 99999888777778899999999999 8899999999999999999999998888776654 666777764 488889
Q ss_pred eCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceeEEEeCCCC----
Q 008050 430 GLDALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYH----LATGGEDNTCRIWDLRKR---KSLYVIPAHSN---- 496 (579)
Q Consensus 430 ~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~----l~tgs~Dg~I~iwDl~~~---~~~~~~~~~~~---- 496 (579)
+.++.+.+||++......... .+...+.++++.+++.. +++++.||.|++||++.. ..+..+..|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 999999999998875543332 23445666666655443 999999999999999987 66778888765
Q ss_pred --------CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 497 --------LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 497 --------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.|++++|+|+ +.+|++|+.||.|++||+.+++++..+.+|...|++++|+|+|++|++++.|+..+.|++.
T Consensus 267 ~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -CCCEEECCEEEEEECTT-TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ccccccccceEEEEEecC-CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 6999999996 7889999999999999999999999999999999999999999999999999866666654
Q ss_pred C
Q 008050 569 N 569 (579)
Q Consensus 569 ~ 569 (579)
+
T Consensus 346 ~ 346 (368)
T 3mmy_A 346 N 346 (368)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.3e-37 Score=317.13 Aligned_cols=278 Identities=18% Similarity=0.214 Sum_probs=214.1
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCC-----
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA------DRTARLWNTDG----- 359 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~------dg~I~iwd~~~----- 359 (579)
.+.+..++.+ +.++.+.....|++.... ..+|...|++++|+|||.+|++|+. |+.|++|+...
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3445555544 444456778999976433 3579999999999999999999997 77899998432
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE----EEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL----LQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~----~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
.......+|...|.+++|+|++. +++++.||+|++||+.+++... ...+|...|++++|+|++++|++|+.||.|
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v 163 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 23445667889999999999985 5678889999999998876543 334789999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEe--CCCCCeEEEEEeeCCCeEEE
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKSLYVIP--AHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~~~~~~--~~~~~V~~v~~sp~~~~~l~ 512 (579)
++||+++++.+..+.+|...|++++|++++ .++++++.||.|++||+++++.+..+. .+...+.+++|+|+++.+|+
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 999999999999999999999999999987 478999999999999999988776554 46678999999998888999
Q ss_pred EEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC-CEEEEEEcCCeEEEEEcCCCCccc
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE-QSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
+|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++|+.||+|+|||+.+++...
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 99999999999999999999999999999999999987 579999999999999998876543
No 68
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-35 Score=310.90 Aligned_cols=243 Identities=26% Similarity=0.504 Sum_probs=219.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~ 364 (579)
+...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.......
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999976655444
Q ss_pred EecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEE-------ecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008050 365 FQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQ-------EGHSRSVYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~-------~~~~~~V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
...+...+.+++|+| ++++|++++.|+.|++||+.++..+..+ .+|...|++++|+|+|.+|++|+.||.|+
T Consensus 202 ~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 445677899999999 8999999999999999999998877655 57889999999999999999999999999
Q ss_pred EEeCCCC------------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEe
Q 008050 437 VWDLRTG------------RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE 504 (579)
Q Consensus 437 iwd~~~~------------~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~s 504 (579)
+||+++. .+...+.+|...|.+++|++++.+|++|+.||.|++||+++++.+..+.+|.+.|.+++|+
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9999763 3556788999999999999999999999999999999999999999999999999999998
Q ss_pred eC-----CCeEEEEEECCCEEEEEECCC
Q 008050 505 PQ-----EGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 505 p~-----~~~~l~sgs~dg~I~iwd~~~ 527 (579)
+. .+.+|++|+.||+|++|++..
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 63 368999999999999999754
No 69
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.9e-37 Score=319.02 Aligned_cols=261 Identities=22% Similarity=0.354 Sum_probs=232.6
Q ss_pred EEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCC
Q 008050 312 IWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD 390 (579)
Q Consensus 312 iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d 390 (579)
.|+..+......+.+|.+.|++++|+|++++|++|+.||+|++||. .++....+..|...|.+++|+|++++|++|+.|
T Consensus 50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 4555566677889999999999999999999999999999999995 556788899999999999999999999999999
Q ss_pred CeEEEEECCCCc-------EEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEE-----ecCCCCeE
Q 008050 391 KTWRLWDVDTGV-------ELLLQEGHSRSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILAL-----EGHVKPVL 457 (579)
Q Consensus 391 g~I~lwd~~~~~-------~~~~~~~~~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~I~ 457 (579)
+.+++||+.+.. ....+.+|.+.|.++.|+|+ +..|++|+.|+.|++||+++++.+..+ .+|...|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999997532 23456689999999999996 457999999999999999999998887 67889999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec
Q 008050 458 GISFSP-NGYHLATGGEDNTCRIWDLR-KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 458 si~~sp-~g~~l~tgs~Dg~I~iwDl~-~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 535 (579)
+++|++ ++.+|++|+.||+|++||++ ....+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+++++.+..+.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 999987 88999999999999999998 45788899999999999999996 7899999999999999999999998886
Q ss_pred CCCC-------cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 536 GHEA-------KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 536 ~h~~-------~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
.+.. .|++++|+++|++|++|+.||.|++||+..++..
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 5432 4899999999999999999999999998776544
No 70
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-34 Score=309.73 Aligned_cols=281 Identities=23% Similarity=0.388 Sum_probs=248.4
Q ss_pred eeecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEc--cCCCEEEEEeCCCcEEEE
Q 008050 278 LDCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFS--PVSNHVATSSADRTARLW 355 (579)
Q Consensus 278 l~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s--p~~~~l~s~s~dg~I~iw 355 (579)
......+|...|.+++|++++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.||.|++|
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 334456899999999999988 99999999999999999999999999999999999999 577899999999999999
Q ss_pred eCCCCe------------------------eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Q 008050 356 NTDGSL------------------------LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS 411 (579)
Q Consensus 356 d~~~~~------------------------~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~ 411 (579)
|+.... ...+.+|...|.++ ++++++|++++.||.|++||+.+++.+..+.+|.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 965432 55677888888877 5678999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008050 412 RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVI 491 (579)
Q Consensus 412 ~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~ 491 (579)
..|++++|+++++++++|+.||.|++||+++++.+..+.+|...|.+++|+ +.+|++|+.||.|++||++++.....+
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 999999999999999999999999999999999999999999999999997 579999999999999999988877666
Q ss_pred eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEE-ecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS-LSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 492 ~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
. +...+..++|+++ +.++++|+ ||.|++||+.+++++.. +..|...|++++|+ ++.++++++.||.+.+|-+
T Consensus 389 ~-~~~~~~~~~~~~~-~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 389 H-HTNLSAITTFYVS-DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp E-CTTCCCEEEEEEC-SSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred c-CCCCccEEEEEeC-CCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 4 5667888899996 77888888 99999999999999986 67889999999998 3445666677776665543
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.8e-35 Score=325.02 Aligned_cols=282 Identities=19% Similarity=0.265 Sum_probs=256.0
Q ss_pred eecccCCCCC-eeEEEEcC--CCCEEEEEecCCeEEEEeCCCC--------eeEEEEeCCCCCeEEEEEccCCCEEEEEe
Q 008050 279 DCTESGDDRP-LSGCSYSH--DGNLLATSSLSGVVKIWSMPRL--------QKFSALKGHTERATDVTFSPVSNHVATSS 347 (579)
Q Consensus 279 ~~~~~gh~~~-I~~~~~sp--dg~~latgs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~l~~sp~~~~l~s~s 347 (579)
...+.+|... |++++|+| ++++|++|+.||.|++||+.++ .....+..|...|.+++|+|++++|++++
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 3445789999 99999999 9999999999999999999754 67778889999999999999999999999
Q ss_pred CC----CcEEEEeCCCCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCC---CeEEEEE
Q 008050 348 AD----RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSR---SVYGIAF 419 (579)
Q Consensus 348 ~d----g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~---~V~~l~~ 419 (579)
.+ +.|++|+ .++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.+|.. .|++++|
T Consensus 136 ~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (615)
T 1pgu_A 136 EGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF 214 (615)
T ss_dssp CCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred cCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence 88 7999999 5678888999999999999999998 899999999999999999999999989998 9999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEeCCCCeEEEEE-e---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC
Q 008050 420 HPD-GSLAASCGLDALARVWDLRTGRSILAL-E---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH 494 (579)
Q Consensus 420 spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~-~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~ 494 (579)
+|+ +++|++++.||.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++.||.|++||+++++.+..+..+
T Consensus 215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 999 999999999999999999999999998 6 899999999999 9999999999999999999999999998877
Q ss_pred ----CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 495 ----SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 495 ----~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
...+.++.|. .+.++++++.||.|++||+.+++.+..+.+|...|++++| |+ |++++.||.|++|++.
T Consensus 294 ~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred CCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 3567888886 3778999999999999999999999999999888888888 76 6666667777777653
No 72
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.3e-35 Score=300.40 Aligned_cols=246 Identities=19% Similarity=0.345 Sum_probs=214.4
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
...+.+|...|.+++|++++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeeEEEe---cccCCeEEEEEecCC----------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 359 GSLLNTFQ---GHLDRLARMAFHPSG----------KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 359 ~~~~~~~~---~h~~~I~~l~~sp~~----------~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
+....... .|...|.+++|+|++ .+|++++.||.|++||. .......+.+|...|++++|+|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCE
Confidence 76555544 688899999999987 79999999999999994 56666777899999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEe----------
Q 008050 426 AASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY--VIP---------- 492 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~--~~~---------- 492 (579)
|++|+.||.|++||+++. .....+ .+...|.+++|+|++.+++++ .|+.|++||+.+++... .+.
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred EEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 999999999999999543 344444 355679999999999887755 57789999998766543 443
Q ss_pred -CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC
Q 008050 493 -AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 493 -~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~ 528 (579)
+|...|.+++|+|+ +.+|++|+.||.|++|++.++
T Consensus 306 ~~~~~~v~~~~~sp~-g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNAL-GKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSS-SCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCC-CCeEEEecCCceEEEEEEEcc
Confidence 57788999999997 788999999999999997654
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-36 Score=307.17 Aligned_cols=247 Identities=20% Similarity=0.313 Sum_probs=209.4
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ--KFSALKGHTERATDVTFSP--VSNHVATSSADRTARL 354 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp--~~~~l~s~s~dg~I~i 354 (579)
...+.+|...|++++|+++|++|++|+.||.|+|||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 34567899999999999999999999999999999998765 4677899999999999986 4899999999999999
Q ss_pred EeCCC---CeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCcE---EEEEecCCCCeEEEEEcCC----
Q 008050 355 WNTDG---SLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVE---LLLQEGHSRSVYGIAFHPD---- 422 (579)
Q Consensus 355 wd~~~---~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~~---~~~~~~~~~~V~~l~~spd---- 422 (579)
||... .....+.+|...|.+++|+|+ +.+|++++.|++|++||+..+.. ...+.+|...|.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 99764 356678899999999999998 78999999999999999987632 2344578889999999997
Q ss_pred -------------CCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEC
Q 008050 423 -------------GSLAASCGLDALARVWDLRTG---RSILALEGHVKPVLGISFSPNG----YHLATGGEDNTCRIWDL 482 (579)
Q Consensus 423 -------------g~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~I~si~~sp~g----~~l~tgs~Dg~I~iwDl 482 (579)
+.+|++|+.|+.|++||++.+ +.+..+.+|...|.+++|+|++ .+|++|+.||+|+|||+
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 468999999999999999865 4667788999999999999986 89999999999999998
Q ss_pred CCCc----eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 483 RKRK----SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 483 ~~~~----~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
.+.. ....+..|...|.+++|+|+ +.+|++++.||.|++|+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~-g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWSIT-ANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEECTT-TCCEEEEESSSCEEEEEEC
T ss_pred cCccccchhhhhhhcCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEEC
Confidence 7621 23345678889999999997 7889999999999999965
No 74
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.9e-36 Score=305.33 Aligned_cols=249 Identities=21% Similarity=0.347 Sum_probs=211.1
Q ss_pred EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEEE
Q 008050 323 ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd 397 (579)
.+.+|.+.|++++|++++++|++|+.|++|+|||+... .+..+.+|.+.|.+++|++ ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 34689999999999999999999999999999996543 4577899999999999975 488999999999999999
Q ss_pred CCCCc--EEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCeE---EEEEecCCCCeEEEEEcCC------
Q 008050 398 VDTGV--ELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTGRS---ILALEGHVKPVLGISFSPN------ 464 (579)
Q Consensus 398 ~~~~~--~~~~~~~~~~~V~~l~~spd--g~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~~~~I~si~~sp~------ 464 (579)
+.++. ....+.+|...|++++|+|+ +.+|++|+.||.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98873 55667789999999999997 78999999999999999987632 3445678889999999997
Q ss_pred -----------CCEEEEEeCCCcEEEEECCCC---ceeEEEeCCCCCeEEEEEeeCC---CeEEEEEECCCEEEEEECCC
Q 008050 465 -----------GYHLATGGEDNTCRIWDLRKR---KSLYVIPAHSNLISQVKFEPQE---GYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 465 -----------g~~l~tgs~Dg~I~iwDl~~~---~~~~~~~~~~~~V~~v~~sp~~---~~~l~sgs~dg~I~iwd~~~ 527 (579)
+.+|++|+.|++|++||++.. +.+..+.+|...|.+++|+|++ +.+|++|+.||+|++|++.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999755 4667788999999999999974 37899999999999999876
Q ss_pred C---e-EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 528 F---K-LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 528 ~---~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
. . ....+..|...|.+++|+|++++|++++.||+|+||+....+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 2 1 123345688999999999999999999999999999987443
No 75
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-35 Score=310.28 Aligned_cols=282 Identities=20% Similarity=0.335 Sum_probs=240.5
Q ss_pred CeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCe----eEEEEeCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC--
Q 008050 288 PLSGCSYSHDGNLL-ATSSLSGVVKIWSMPRLQ----KFSALKGHTERATDVTFSP-VSNHVATSSADRTARLWNTDG-- 359 (579)
Q Consensus 288 ~I~~~~~spdg~~l-atgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~~-- 359 (579)
....++++++...+ ++++.||.|+||++.+.. .+..+.+|.+.|.+++|+| ++.+|++|+.||.|++|++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 45568899887544 457889999999996643 3445678999999999999 899999999999999999654
Q ss_pred ------CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCeEEEEEcCCCCEEEEEe
Q 008050 360 ------SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQ--EGHSRSVYGIAFHPDGSLAASCG 430 (579)
Q Consensus 360 ------~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~--~~~~~~V~~l~~spdg~~l~sg~ 430 (579)
..+..+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.+..+ ..|...|++++|+|++.+|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 4578889999999999999998 69999999999999999999998888 78999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEEE-ecCCCC-eEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-eEEEe-CCCCCeEEEEE
Q 008050 431 LDALARVWDLRTGRSILAL-EGHVKP-VLGISFSPNGYHLATG---GEDNTCRIWDLRKRKS-LYVIP-AHSNLISQVKF 503 (579)
Q Consensus 431 ~dg~I~iwd~~~~~~~~~~-~~~~~~-I~si~~sp~g~~l~tg---s~Dg~I~iwDl~~~~~-~~~~~-~~~~~V~~v~~ 503 (579)
.||.|++||+++++.+..+ ..|.+. +.++.|++++.+|++| +.|+.|++||++++.. +.... .|...+.++.|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999988 678776 8999999999999999 7899999999998664 33333 46778999999
Q ss_pred eeCCCeEEEEEECCCEEEEEECCCCeE-EEEecC--CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRDFKL-VKSLSG--HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~~~~-~~~l~~--h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
++++..++++|+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .++.+++|++.++.
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 998554445677899999999998773 333332 5689999999999998775 57799999998754
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-35 Score=300.50 Aligned_cols=252 Identities=21% Similarity=0.374 Sum_probs=222.0
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC---CCeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD---GSLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTW 393 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~---~~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I 393 (579)
+.+..+.+|...|++++|+|++++|++|+.||.|++|++. ...+..+.+|...|.+++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3455678999999999999999999999999999999964 3456778899999999999977 8999999999999
Q ss_pred EEEECCCCc--EEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcC----
Q 008050 394 RLWDVDTGV--ELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSP---- 463 (579)
Q Consensus 394 ~lwd~~~~~--~~~~~~~~~~~V~~l~~spd--g~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp---- 463 (579)
++||+.++. .+..+..|...|.+++|+|+ +.+|++++.||.|++||++++. ....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 66677789999999999999 9999999999999999999873 4556778999999999999
Q ss_pred ---------CCCEEEEEeCCCcEEEEECCCCc----eeEEEeCCCCCeEEEEEeeCC--CeEEEEEECCCEEEEEECCCC
Q 008050 464 ---------NGYHLATGGEDNTCRIWDLRKRK----SLYVIPAHSNLISQVKFEPQE--GYFLVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 464 ---------~g~~l~tgs~Dg~I~iwDl~~~~----~~~~~~~~~~~V~~v~~sp~~--~~~l~sgs~dg~I~iwd~~~~ 528 (579)
++.+|++|+.||.|++||++++. .+..+..|...|.+++|+|++ +.+|++++.||.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998764 446777899999999999975 789999999999999999876
Q ss_pred e-----EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCC
Q 008050 529 K-----LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 529 ~-----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
. .+.....|...|++++|+|+|++|++++.||.|++|++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 3 22233458889999999999999999999999999999754
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=338.56 Aligned_cols=232 Identities=15% Similarity=0.176 Sum_probs=196.1
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG- 359 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~- 359 (579)
...||...|++++|+|++++||+|+.||.|+||+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+..
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34589999999999999999999999999999999887776654 4788999999999 88999999999999999754
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-----------EEecCCCCeEEEEEcCC-CCEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-----------LQEGHSRSVYGIAFHPD-GSLAA 427 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-----------~~~~~~~~V~~l~~spd-g~~l~ 427 (579)
+.+..+. |...|++++|+|++++|++|+.||+|++||+.++.... ...+|.+.|++++|+|+ +..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 5566665 67899999999999999999999999999999887541 22468899999999996 57899
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEecC------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 008050 428 SCGLDALARVWDLRTGRSILALEGH------------------VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~~~------------------~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
+|+.||.| +||+++++.+..+..| ...|++++|+|+|.+|++|+.||+|++||+++++++.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999999888766 4679999999999999999999999999999988765
Q ss_pred EEe-----C-------------CCCCeEEEEEeeC----CCeEEEEEEC
Q 008050 490 VIP-----A-------------HSNLISQVKFEPQ----EGYFLVTGSY 516 (579)
Q Consensus 490 ~~~-----~-------------~~~~V~~v~~sp~----~~~~l~sgs~ 516 (579)
... . |...|++++|++. ++.+|++|+.
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 421 1 2346888998642 2245555543
No 78
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=333.84 Aligned_cols=284 Identities=12% Similarity=0.124 Sum_probs=234.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLN 363 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~ 363 (579)
.|..+|.+++|++ |++|++++.|+.|+|||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+.+..+.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999988886 7789999999999999999999999999998765543
Q ss_pred ------------EEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEEecC------------------CC
Q 008050 364 ------------TFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVELLLQEGH------------------SR 412 (579)
Q Consensus 364 ------------~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~------------------~~ 412 (579)
.+.+|.+.|.+++|+|+ +.+|++|+.||.| +||+++++.+..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 23568899999999996 4789999999999 9999999888777655 46
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE--E---ecC-------------CCCeEEE---------------
Q 008050 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA--L---EGH-------------VKPVLGI--------------- 459 (579)
Q Consensus 413 ~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~--~---~~~-------------~~~I~si--------------- 459 (579)
.|++++|+|+|.+|++|+.||.|++||+++++.+.. + ..| ...|+++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999977654321 0 000 0011111
Q ss_pred --------------------------------------------------------------------------------
Q 008050 460 -------------------------------------------------------------------------------- 459 (579)
Q Consensus 460 -------------------------------------------------------------------------------- 459 (579)
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence
Q ss_pred ---------------------------------------------------------------------EEcCCCCEEEE
Q 008050 460 ---------------------------------------------------------------------SFSPNGYHLAT 470 (579)
Q Consensus 460 ---------------------------------------------------------------------~~sp~g~~l~t 470 (579)
+|+|+|++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 12345667788
Q ss_pred EeCCCcEEEEECCCCcee----EEE--e-----CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-----------
Q 008050 471 GGEDNTCRIWDLRKRKSL----YVI--P-----AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF----------- 528 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~~----~~~--~-----~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~----------- 528 (579)
|+.|++|++||+.++... ..+ . +|...|.+++|+|+ +.+|++|+.||+|+||++.++
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd-g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE-TLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT-TTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCC-CCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 888888888887765321 111 1 67889999999997 789999999999999998765
Q ss_pred ----------------------------------eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 529 ----------------------------------KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 529 ----------------------------------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
+++..+.+|.+.|++++||||| +|++|+.||+|+|||+.++..
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 3577888999999999999999 999999999999999877543
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-33 Score=339.07 Aligned_cols=293 Identities=25% Similarity=0.426 Sum_probs=259.3
Q ss_pred cccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCC
Q 008050 281 TESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSP--VSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp--~~~~l~s~s~dg~I~iwd~~ 358 (579)
...+|...|.+++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++ ++.++++|+.||.|++||..
T Consensus 652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~ 731 (1249)
T 3sfz_A 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence 4468999999999999999999999999999999999999999999999999999999 55689999999999999954
Q ss_pred -CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE------------------------------
Q 008050 359 -GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ------------------------------ 407 (579)
Q Consensus 359 -~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~------------------------------ 407 (579)
+.....+.+|.+.|.+++|+|++++|++++.||+|++||+.++......
T Consensus 732 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 811 (1249)
T 3sfz_A 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 811 (1249)
T ss_dssp SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS
T ss_pred CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC
Confidence 5678888999999999999999999999999999999998776443221
Q ss_pred -------------------------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEc
Q 008050 408 -------------------------EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFS 462 (579)
Q Consensus 408 -------------------------~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~s 462 (579)
.+|...|.+++|+|++.++++++.||.|++||+.++..+..+.+|...|.+++|+
T Consensus 812 ~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC
Confidence 2677889999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-----------------------------------------------------------
Q 008050 463 PNGYHLATGGEDNTCRIWDLR----------------------------------------------------------- 483 (579)
Q Consensus 463 p~g~~l~tgs~Dg~I~iwDl~----------------------------------------------------------- 483 (579)
|+|.+|++++.||.|++||+.
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 999999999999988888743
Q ss_pred --------------------CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEE
Q 008050 484 --------------------KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTS 543 (579)
Q Consensus 484 --------------------~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 543 (579)
+++.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+ .+..|...|.+
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~ 1049 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD-GKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKD 1049 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS-SSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEE
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEE
Confidence 22334445568888999999996 788999999999999999999877 45679999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+.|++++ .+++++.||.|++||+.++.....+
T Consensus 1050 ~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A 1050 FRLLQDS-RLLSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp EEECSSS-EEEEEESSSEEEEEETTTTCCCEEE
T ss_pred EEEcCCC-cEEEEECCCcEEEEECCCCceeEEE
Confidence 9999965 5788999999999999888765443
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-33 Score=323.24 Aligned_cols=290 Identities=20% Similarity=0.305 Sum_probs=255.5
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
.....+|..+|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++++.||.|++|+..
T Consensus 48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred C--CeeEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-CCeEEEEEcC--CCCEEEEEeCC
Q 008050 359 G--SLLNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS-RSVYGIAFHP--DGSLAASCGLD 432 (579)
Q Consensus 359 ~--~~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~~V~~l~~sp--dg~~l~sg~~d 432 (579)
. .....+.+|...|.+++|+| ++.+|++++.||.|++||+.++........+. ..+.+++|+| ++.+|++|+.|
T Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp GTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 4 45677889999999999999 88999999999999999998887766665544 8899999999 99999999999
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
|.|++||+++++.+..+.+|...|.+++|+|+|.+|++++.||.|++||+.+++.+..+..|...+.+++|+|++..+++
T Consensus 208 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 287 (814)
T 3mkq_A 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI 287 (814)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998555444
Q ss_pred EEECCCEEEEEECCCC----------eEEE---------------------------------EecCCCCcEEEEEEcCC
Q 008050 513 TGSYDMTVKVWSGRDF----------KLVK---------------------------------SLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~----------~~~~---------------------------------~l~~h~~~V~~l~~s~d 549 (579)
+++.++.+.+|++... +.+. .+..+...+.+++|+|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 367 (814)
T 3mkq_A 288 ASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN 367 (814)
T ss_dssp EEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT
T ss_pred EEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCC
Confidence 4555777889986542 2222 11234456789999999
Q ss_pred CCEEEEEEcCCeEEEEEcCC
Q 008050 550 EQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~ 569 (579)
|++|++++ ||.+.+|++..
T Consensus 368 g~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 368 GRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp SSEEEEEE-TTEEEEEETTT
T ss_pred CCEEEEec-CCEEEEEECcc
Confidence 99999888 89999999754
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=295.40 Aligned_cols=248 Identities=19% Similarity=0.328 Sum_probs=219.3
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC--CCeeEEEEeCCCCCeEEEEEccC--CCEEEEEeCCCcEEE
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP--RLQKFSALKGHTERATDVTFSPV--SNHVATSSADRTARL 354 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~sp~--~~~l~s~s~dg~I~i 354 (579)
...+.+|...|++++|++++++|++|+.||.|+|||+. ++..+..+.+|...|.+++|+++ +.+|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 34567899999999999999999999999999999998 66777888999999999999977 899999999999999
Q ss_pred EeCCCC---eeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCeEEEEEcC------
Q 008050 355 WNTDGS---LLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHP------ 421 (579)
Q Consensus 355 wd~~~~---~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~--~~~~~~~~~~~~V~~l~~sp------ 421 (579)
||+... ....+..|...|.+++|+|+ +.+|++++.|+.|++||+.++ .....+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 997654 66778889999999999999 999999999999999999887 34456678999999999999
Q ss_pred -------CCCEEEEEeCCCeEEEEeCCCCe----EEEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc-
Q 008050 422 -------DGSLAASCGLDALARVWDLRTGR----SILALEGHVKPVLGISFSPN---GYHLATGGEDNTCRIWDLRKRK- 486 (579)
Q Consensus 422 -------dg~~l~sg~~dg~I~iwd~~~~~----~~~~~~~~~~~I~si~~sp~---g~~l~tgs~Dg~I~iwDl~~~~- 486 (579)
++.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.||.|++||++++.
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 69999999999999999998764 45677889999999999999 8999999999999999998864
Q ss_pred --eeEEE--eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 487 --SLYVI--PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 487 --~~~~~--~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
....+ ..|...|.+++|+|+ +.+|++++.||.|++|++..
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSS-SCCEEEEESSSSEEEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCC-CCEEEEecCCCcEEEEeCCC
Confidence 22222 237889999999997 77899999999999999863
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.7e-34 Score=302.72 Aligned_cols=283 Identities=24% Similarity=0.378 Sum_probs=243.8
Q ss_pred CCeeEEEEcCCC----------CEEEEEec----CCeEEEEeCC--------------------------CCee-EEEEe
Q 008050 287 RPLSGCSYSHDG----------NLLATSSL----SGVVKIWSMP--------------------------RLQK-FSALK 325 (579)
Q Consensus 287 ~~I~~~~~spdg----------~~latgs~----dg~I~iwd~~--------------------------~~~~-~~~l~ 325 (579)
-+..++.|.|+. .++++|+. ...|.++++. +++. .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 467888998875 46788765 3467777542 1111 23455
Q ss_pred CCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCC-----------CCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCe
Q 008050 326 GHTERATDVTFSPV-SNHVATSSADRTARLWNTD-----------GSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKT 392 (579)
Q Consensus 326 ~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~-----------~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~ 392 (579)
.|.+.|++++|+|+ +.+|++++.||.|++|++. ...+..+.+|...|.+++|+|++. +|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 79999999999997 6789999999999999965 366788899999999999999998 9999999999
Q ss_pred EEEEECCCCcE-------EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---eEEEEEecCCCCeEEEEE
Q 008050 393 WRLWDVDTGVE-------LLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTG---RSILALEGHVKPVLGISF 461 (579)
Q Consensus 393 I~lwd~~~~~~-------~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~~~~I~si~~ 461 (579)
|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987322 345568999999999999 6789999999999999999987 577888899999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCC-CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC------------
Q 008050 462 SPNGY-HLATGGEDNTCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD------------ 527 (579)
Q Consensus 462 sp~g~-~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~------------ 527 (579)
+|++. +|++|+.||.|++||+++ ...+..+..|...|.+++|+|++..+|++++.||.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 99886 788999999999999998 5678899999999999999998768899999999999999876
Q ss_pred --CeEEEEecCCCCcEEEEEEcCCCC-EEEEEEcCCeEEEEEcCC
Q 008050 528 --FKLVKSLSGHEAKVTSLDIHPDEQ-SIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 528 --~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~iW~~~~ 569 (579)
.+++..+.+|...|++++|+|++. +|++++.||.|+||++..
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 367888889999999999999999 899999999999999864
No 83
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-35 Score=308.54 Aligned_cols=274 Identities=14% Similarity=0.181 Sum_probs=233.3
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCeeEEEE-eCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCC---C--e-eEEE
Q 008050 294 YSHDGNLLATSSLSGVVKIWSMPRLQKFSAL-KGHTERATDVTFSP-VSNHVATSSADRTARLWNTDG---S--L-LNTF 365 (579)
Q Consensus 294 ~spdg~~latgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~~---~--~-~~~~ 365 (579)
|++++..+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||.|++||... . . ....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 788888887765 387 567888888 88999999999999 999999999999999999543 1 1 1222
Q ss_pred ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC---CCcEEEEEec------------CCCCeEEEE--EcCCCCEEEE
Q 008050 366 QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD---TGVELLLQEG------------HSRSVYGIA--FHPDGSLAAS 428 (579)
Q Consensus 366 ~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~---~~~~~~~~~~------------~~~~V~~l~--~spdg~~l~s 428 (579)
..|...|.+++|++++++|++++.||+|++||+. +++....... +...+.++. +++++.+|++
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 2589999999999999999999999999999995 5544433221 456677777 5678999999
Q ss_pred EeCCCeEEEEeCCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEee
Q 008050 429 CGLDALARVWDLRTGRSILALEG--HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEP 505 (579)
Q Consensus 429 g~~dg~I~iwd~~~~~~~~~~~~--~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp 505 (579)
|+.||.|++||+++++.+..+.. |...|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|.+++|+|
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 99999999999999999999988 88999999999999999999999999999999999999886 6778899997775
Q ss_pred C---CCeEEEEEECCCEEEEEECCCCeEEEEecC--------------------------CCCcEEEEEEcCCCCEEEEE
Q 008050 506 Q---EGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--------------------------HEAKVTSLDIHPDEQSIATV 556 (579)
Q Consensus 506 ~---~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------------------------h~~~V~~l~~s~dg~~L~s~ 556 (579)
. ++.+|++|+.||.|++||+.+++++..+.+ |...|++++|+ ++++|++|
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~ 346 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTD 346 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEE
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEec
Confidence 3 367999999999999999999998887764 44558889999 77899999
Q ss_pred EcCCeEEEEEcCCCCcccc
Q 008050 557 SHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 557 s~Dg~I~iW~~~~~~~~~~ 575 (579)
+.||.|++||+.+++....
T Consensus 347 ~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 347 EATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp GGGTEEEEEETTCGGGCEE
T ss_pred CCCCeEEEEECCCcccceE
Confidence 9999999999998776543
No 84
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=299.09 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=237.3
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe---eEEEEeC------------------------------------
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ---KFSALKG------------------------------------ 326 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~---~~~~l~~------------------------------------ 326 (579)
..++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3588999999999976665 58899999999988 6555553
Q ss_pred ------------------CCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCC---CCeeEEEe--cccCCeEEEEEecCCC
Q 008050 327 ------------------HTERATDVTFSPVSNHV-ATSSADRTARLWNTD---GSLLNTFQ--GHLDRLARMAFHPSGK 382 (579)
Q Consensus 327 ------------------h~~~V~~l~~sp~~~~l-~s~s~dg~I~iwd~~---~~~~~~~~--~h~~~I~~l~~sp~~~ 382 (579)
|.+.|.+++|+|++++| ++|+.||.|++|++. ++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 33379999999999996 889999999999965 55666665 5678999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEE----EEecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCC
Q 008050 383 YLGTTSFDKTWRLWDVDTGVELL----LQEGHSRSVYGIAFHPD---GSLAASCGLDALARVWDLRTGRSILA-LEGHVK 454 (579)
Q Consensus 383 ~l~s~s~dg~I~lwd~~~~~~~~----~~~~~~~~V~~l~~spd---g~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~ 454 (579)
+|++++.+|.|++|++.++.... .+.+|...|++++|+|+ +.+|++|+.|+.|++||+++++.+.. +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999998876543 56689999999999999 99999999999999999999988877 558999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC-------------------------CCCeEEEEEeeCCCe
Q 008050 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH-------------------------SNLISQVKFEPQEGY 509 (579)
Q Consensus 455 ~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-------------------------~~~V~~v~~sp~~~~ 509 (579)
.|.+++|+ ++.+|++|+.|+.|++||+++++.+..+..+ ...|..+.|+++ +.
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~ 320 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN-LP 320 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS-SS
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC-CC
Confidence 99999999 9999999999999999999999988888632 356899999996 67
Q ss_pred EEEEEE-CCCEEEEEEC--CCC---eEEEEecCCCCcEEEEEEcCCCCEEEEEEc-------CCeEEEEEcCCC
Q 008050 510 FLVTGS-YDMTVKVWSG--RDF---KLVKSLSGHEAKVTSLDIHPDEQSIATVSH-------DRWIKLWSTRNK 570 (579)
Q Consensus 510 ~l~sgs-~dg~I~iwd~--~~~---~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-------Dg~I~iW~~~~~ 570 (579)
+|++++ .++.|++|++ ..+ +.+..+..| +.|.+++|++++ ++++.+. +..|.+|.+...
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEEcC
Confidence 777777 8999999999 555 778888888 789999999964 4444432 556899987654
No 85
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=293.71 Aligned_cols=260 Identities=18% Similarity=0.282 Sum_probs=224.4
Q ss_pred eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeC----CCCe-------eEEEec---------
Q 008050 309 VVKIWSMPRLQKFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWNT----DGSL-------LNTFQG--------- 367 (579)
Q Consensus 309 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~----~~~~-------~~~~~~--------- 367 (579)
.+.+|++...........|.+.|.+++|+|++. +|++|+.||.|++|++ .... ...+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 345777776666555566889999999999999 9999999999999998 5433 344444
Q ss_pred -ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 008050 368 -HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI 446 (579)
Q Consensus 368 -h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~ 446 (579)
|...|.+++|+|++++|++++.||.|++|| .++..+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 677999999999999999999999999999 677788888899999999999999999999999999999999877654
Q ss_pred EE--------------------------------------------------------EecCCCCeEEEEEcCCCCEEEE
Q 008050 447 LA--------------------------------------------------------LEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 447 ~~--------------------------------------------------------~~~~~~~I~si~~sp~g~~l~t 470 (579)
.. +..|...|.+++|++++.+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 43 3356778999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 471 GGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
++.||.|++||+++++.+..+..|...|.+++|+++ + +|++++.||.|++||+.+++.+..+..|...|++++|+|++
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG 342 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence 999999999999999999999999999999999997 5 89999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCC
Q 008050 551 QSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
++|++++.||.|++|++.++.
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHH
T ss_pred CEEEEEECCCeEEEEECCCCc
Confidence 999999999999999997654
No 86
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-33 Score=314.59 Aligned_cols=254 Identities=23% Similarity=0.399 Sum_probs=225.6
Q ss_pred eEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCC------CeeEEEecccCCeEEEEEecCCCEEEEEeCCCe
Q 008050 320 KFSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTDG------SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT 392 (579)
Q Consensus 320 ~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~ 392 (579)
....+.+|.+.|++++|++++ ++|++|+.||+|++|++.. .....+.+|...|.+++|++++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 344678999999999999865 7999999999999999653 245678999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCCeEEEEEcCCC--CE
Q 008050 393 WRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL---EGHVKPVLGISFSPNG--YH 467 (579)
Q Consensus 393 I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~I~si~~sp~g--~~ 467 (579)
|++||+.++.....+.+|...|.+++|+|++++|++|+.|+.|++||+......... .+|...|.+++|+|++ .+
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999998765443332 3688889999999986 68
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc
Q 008050 468 LATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
|++|+.|++|++||+++++....+..|.+.|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.. ...|.+++|+
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s 611 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFS 611 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEc
Confidence 999999999999999999999999999999999999996 78999999999999999999999988864 4679999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 548 PDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 548 ~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
|++.+|++++ |+.|+|||+.++.....+
T Consensus 612 p~~~~l~~~~-~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 612 PNRYWLCAAT-EHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence 9998777765 667999999887655433
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-33 Score=290.07 Aligned_cols=244 Identities=14% Similarity=0.185 Sum_probs=222.0
Q ss_pred EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 008050 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 324 l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~ 400 (579)
+..|...|.+++|+|++++|++++.||.|++|+..+. .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 4568999999999999999999999999999997665 7888899999999999999999999999999999999988
Q ss_pred CcEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE---EEE-EecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 401 GVELLL--QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS---ILA-LEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 401 ~~~~~~--~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~---~~~-~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
++.... ...|...|.+++|++++++|++++.||.|++||++.+.. ... ...|...|.+++|+|++.+|++++.|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 875443 357889999999999999999999999999999998763 233 35678899999999999999999999
Q ss_pred CcEEEEECC------------------CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC
Q 008050 475 NTCRIWDLR------------------KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG 536 (579)
Q Consensus 475 g~I~iwDl~------------------~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 536 (579)
|.|++||++ .++.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+..
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC-CCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 999999953 67888888899999999999996 78999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 537 HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 537 h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
|...|++++|++++.+|++| .||.|++|++.+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999988877 899999999987
No 88
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-33 Score=294.24 Aligned_cols=249 Identities=20% Similarity=0.250 Sum_probs=224.4
Q ss_pred ecccCCCCCeeEEEEcCC----C---CEEEEEecCCeEEEEeCCCCee-----EEEEeCC-----CCCeEEEEEc----c
Q 008050 280 CTESGDDRPLSGCSYSHD----G---NLLATSSLSGVVKIWSMPRLQK-----FSALKGH-----TERATDVTFS----P 338 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spd----g---~~latgs~dg~I~iwd~~~~~~-----~~~l~~h-----~~~V~~l~~s----p 338 (579)
....+|...|.+++|+++ + ++|++++.||.|++|++.+++. +..+..| ...|.+++|+ +
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 135 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 135 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence 344589999999999999 9 9999999999999999998887 8888888 5999999999 9
Q ss_pred CCCE-EEEEeCCCcEEEEeCCC-------CeeE-----EE-------ecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 008050 339 VSNH-VATSSADRTARLWNTDG-------SLLN-----TF-------QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV 398 (579)
Q Consensus 339 ~~~~-l~s~s~dg~I~iwd~~~-------~~~~-----~~-------~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~ 398 (579)
++.+ |++++.||.|++||+.. +.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL 214 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC
Confidence 9999 99999999999999654 4444 66 4488999999999999 9999999999999999
Q ss_pred CCCcEEEEEec---C---CCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCeEEEEEec-------------CCCCe
Q 008050 399 DTGVELLLQEG---H---SRSVYGIAFHPDGSLAASCGLD---ALARVWDLRTGRSILALEG-------------HVKPV 456 (579)
Q Consensus 399 ~~~~~~~~~~~---~---~~~V~~l~~spdg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~-------------~~~~I 456 (579)
.+++.+..+.. | ...|.+++|+|++.+|++++.| |.|++||+++++.+..+.. |...|
T Consensus 215 ~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 294 (397)
T 1sq9_A 215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 294 (397)
T ss_dssp TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE
T ss_pred CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE
Confidence 99999988888 8 9999999999999999999999 9999999999999999998 99999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe------CC---------------CCCeEEEEEeeCCC-------
Q 008050 457 LGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP------AH---------------SNLISQVKFEPQEG------- 508 (579)
Q Consensus 457 ~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~------~~---------------~~~V~~v~~sp~~~------- 508 (579)
.+++|+|++.+|++++.||.|++||+++++.+..+. .| ...|.+++|++++.
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 374 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD 374 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccc
Confidence 999999999999999999999999999999999999 77 89999999999732
Q ss_pred --eEEEEEECCCEEEEEECCCCe
Q 008050 509 --YFLVTGSYDMTVKVWSGRDFK 529 (579)
Q Consensus 509 --~~l~sgs~dg~I~iwd~~~~~ 529 (579)
.+|++++.||.|++|++.+++
T Consensus 375 ~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 375 LNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSCEEEEEETTTEEEEEEEEC--
T ss_pred ccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999987763
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-32 Score=278.70 Aligned_cols=255 Identities=23% Similarity=0.382 Sum_probs=226.6
Q ss_pred CCCeeEEEEeCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC------CeeEEEecccCCeEEEEEecCCCEEEEEe
Q 008050 316 PRLQKFSALKGHTERATDVTFSPV-SNHVATSSADRTARLWNTDG------SLLNTFQGHLDRLARMAFHPSGKYLGTTS 388 (579)
Q Consensus 316 ~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~------~~~~~~~~h~~~I~~l~~sp~~~~l~s~s 388 (579)
++.....+|++|.+.|++|+|+|+ +++|++|+.||+|+|||+.. .....+.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344566789999999999999997 68999999999999999543 24567889999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEecCCCCeEEEEEcCCC--
Q 008050 389 FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI-LALEGHVKPVLGISFSPNG-- 465 (579)
Q Consensus 389 ~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~-~~~~~~~~~I~si~~sp~g-- 465 (579)
.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ..+.+|...+..++|++++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 9999999999999988888888999999999999999999999999999999876543 4456788999999999864
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEE
Q 008050 466 YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLD 545 (579)
Q Consensus 466 ~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 545 (579)
.++++++.|+.|++||+++++.+..+..|.+.|++++|+|+ +.+|++|+.||.|++||+.+++.+..+..+ ..|.++.
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 263 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC 263 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee
Confidence 57889999999999999999999999999999999999996 789999999999999999999999988755 5799999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 546 IHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 546 ~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
|++++. +++++.|+.|++||+.++...
T Consensus 264 ~~~~~~-~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 264 FSPNRY-WLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp ECSSSS-EEEEEETTEEEEEETTTTEEE
T ss_pred cCCCCc-eeeccCCCEEEEEECCCCeEE
Confidence 999875 556667999999999876543
No 90
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=280.72 Aligned_cols=254 Identities=19% Similarity=0.281 Sum_probs=230.4
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
.....+.+|...|++++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 345567899999999999999999999999999999995 5678888999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCe-----------EEEEEecCCC--CeEEE
Q 008050 398 VDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD-----ALARVWDLRTGR-----------SILALEGHVK--PVLGI 459 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d-----g~I~iwd~~~~~-----------~~~~~~~~~~--~I~si 459 (579)
+.+++.+..+. +...+.+++|+|++.++++++.+ |.|++||+..+. .+..+..|.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99999888876 88899999999999999999999 999999997653 3344555665 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC
Q 008050 460 SFSPNGYHLATGGEDNTCRIWDLRK-RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE 538 (579)
Q Consensus 460 ~~sp~g~~l~tgs~Dg~I~iwDl~~-~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~ 538 (579)
+|++++++|++++.||.|++||+++ +..+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+. +.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD-LTYFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC-CCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence 9999999999999999999999998 7888999999999999999996 7889999999999999999999998887 77
Q ss_pred CcEEEEEEcCCCCEEEEEEcCC--------------eEEEEEcCCCCcccc
Q 008050 539 AKVTSLDIHPDEQSIATVSHDR--------------WIKLWSTRNKGDEHA 575 (579)
Q Consensus 539 ~~V~~l~~s~dg~~L~s~s~Dg--------------~I~iW~~~~~~~~~~ 575 (579)
..+.+++|+++++++++++.++ .+++|++.+++....
T Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 8899999999999999999988 899999988765543
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=289.76 Aligned_cols=249 Identities=22% Similarity=0.407 Sum_probs=220.4
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--CC
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD--GS 360 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~--~~ 360 (579)
.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++|+.||.|++||+. +.
T Consensus 131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc
Confidence 3488999999999999999999999999999999999999999999999999994 6899999999999999965 56
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCC-EEEEEe--CCCeEEE
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGS-LAASCG--LDALARV 437 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~--~dg~I~i 437 (579)
....+.+|...|.+++|+|++++|++++.||.|++||+.++.....+..|...|.+++|+|++. ++++|+ .||.|++
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 7888999999999999999999999999999999999999999988889999999999999764 666665 7999999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeE--EEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLY--VIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~~~~~~--~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
||+++++.+..+. +...|.+++|++++.+|++++ .||.|++||+.++.... .+..|...|.+++|+|+ +.+|++
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s 366 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD-GRILST 366 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT-SSEEEE
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC-CCEEEE
Confidence 9999999998886 567799999999999999954 89999999999865544 46789999999999996 789999
Q ss_pred EECCCEEEEEECCCCeEEEEec
Q 008050 514 GSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 514 gs~dg~I~iwd~~~~~~~~~l~ 535 (579)
++.||.|++|++.+++.+....
T Consensus 367 ~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 367 AASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ECTTSEEEEEECCC--------
T ss_pred EeCCCcEEEEECCCCccccccc
Confidence 9999999999999988776553
No 92
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-35 Score=302.31 Aligned_cols=243 Identities=16% Similarity=0.161 Sum_probs=208.2
Q ss_pred EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 008050 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG---SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 324 l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~ 400 (579)
+..|.+.|++++|+|++++|++|+.||.|++|+..+ ..+..+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 345778999999999999999999999999999665 46677889999999999999999999999999999999998
Q ss_pred Cc---EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---EEEEEec-CCCCeEEEEEcCCCCEEEEEeC
Q 008050 401 GV---ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR---SILALEG-HVKPVLGISFSPNGYHLATGGE 473 (579)
Q Consensus 401 ~~---~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~---~~~~~~~-~~~~I~si~~sp~g~~l~tgs~ 473 (579)
+. ....+.+|...|++++|+|++++|++|+.||.|++||+++++ ....+.. |...|.+++|+|++.+|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 77 566677899999999999999999999999999999999887 3677777 9999999999999999999999
Q ss_pred CCcEEEEECC------------------CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE----E
Q 008050 474 DNTCRIWDLR------------------KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL----V 531 (579)
Q Consensus 474 Dg~I~iwDl~------------------~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~----~ 531 (579)
||.|++||++ .++++..+ .|...|.+++|+|+ +.+|++++.||.|++||+.+++. +
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 9999999985 34556666 89999999999996 78999999999999999998876 7
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 532 KSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 532 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
..+.+|...|++++|++++++|++|+.|+.+ +|+...
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 8888999999999999999999998766655 777653
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-33 Score=292.24 Aligned_cols=258 Identities=20% Similarity=0.268 Sum_probs=217.4
Q ss_pred eCCCCeeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCC-CeeEEEe--cccCCeEEEEEec-CCCEEEEEe
Q 008050 314 SMPRLQKFSALKGHTERATDVTFSPVS-NHVATSSADRTARLWNTDG-SLLNTFQ--GHLDRLARMAFHP-SGKYLGTTS 388 (579)
Q Consensus 314 d~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~-~~~~~~~--~h~~~I~~l~~sp-~~~~l~s~s 388 (579)
++.+......+.+|...|.+++|+|++ ++|++|+.||.|++|+..+ .....+. +|...|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334556666778999999999999999 9999999999999999764 4444443 6999999999999 779999999
Q ss_pred CCCeEEEEECCCCcEEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCC
Q 008050 389 FDKTWRLWDVDTGVELLLQEG---HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNG 465 (579)
Q Consensus 389 ~dg~I~lwd~~~~~~~~~~~~---~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g 465 (579)
.|+.|++||+.+. .+..+.. |...|.+++|+|++.+|++|+.||.|++||+ +++.+..+..|...|.+++|+|++
T Consensus 139 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 139 IRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp TTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC
T ss_pred CCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC
Confidence 9999999999864 4444433 3478999999999999999999999999999 578889999999999999999999
Q ss_pred C-EEEEEeCCCcEEEEECCC----CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC--
Q 008050 466 Y-HLATGGEDNTCRIWDLRK----RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE-- 538 (579)
Q Consensus 466 ~-~l~tgs~Dg~I~iwDl~~----~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-- 538 (579)
. +|++|+.|+.|++||+++ +..+..+ .|...|.+++|+|.++.+|++++.||.|++||+.+++.+..+.+|.
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 8 999999999999999997 5666666 6899999999999337899999999999999999887666665442
Q ss_pred ---------------CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 539 ---------------AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 539 ---------------~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+.+..++|+++|++ +++.||.|++||+.+++....+
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 33455667777766 7789999999999988765544
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-32 Score=288.55 Aligned_cols=261 Identities=19% Similarity=0.378 Sum_probs=221.3
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--C
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD--G 359 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~--~ 359 (579)
..+|...|++++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...+.++.|+ +.+|++|+.|+.+++|+.. .
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence 45788899999999999999999999999999999999999999999999999886 5899999999999999954 4
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCeEEEEEcCCCC-EEEE--EeCC
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV----ELLLQEGHSRSVYGIAFHPDGS-LAAS--CGLD 432 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~----~~~~~~~~~~~V~~l~~spdg~-~l~s--g~~d 432 (579)
..+..+.+|...+..+.|++++.++++++.|+.+++|+..+++ .+.....|...|.+++|+|++. ++++ |+.|
T Consensus 221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 5677889999999999999999999999999999999998764 3455668899999999999654 5555 3579
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
+.|++||+++++....+..+ ..+.++.|++++..|++++ .||.|+|||+.+++++..+.+|.+.|++++|+|+ +.+
T Consensus 301 ~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd-g~~ 378 (420)
T 4gga_A 301 RHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD-GAT 378 (420)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSC
T ss_pred CEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-CCE
Confidence 99999999999999888865 4599999999999988876 7899999999999999999999999999999997 788
Q ss_pred EEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEE
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDI 546 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 546 (579)
|++|+.||+|+|||+....+......+...+....|
T Consensus 379 l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 379 VASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999999999999999877666655555544443333
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-32 Score=270.85 Aligned_cols=250 Identities=22% Similarity=0.346 Sum_probs=225.2
Q ss_pred CCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEE
Q 008050 317 RLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRL 395 (579)
Q Consensus 317 ~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~l 395 (579)
..+....+.+|.+.|.+++| +++.+|++++.||.|++|+..+ .....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34677888999999999999 9999999999999999999654 567778889999999999999999999999999999
Q ss_pred EECCCC---cEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 008050 396 WDVDTG---VELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP-NGYHLATG 471 (579)
Q Consensus 396 wd~~~~---~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp-~g~~l~tg 471 (579)
|++... ..+..+.+|...|.++.| ++.++++++.||.|++|| .++.+..+..|...+.+++|++ ++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 998764 456677789999999999 577999999999999999 7888889999999999999998 89999999
Q ss_pred eCCCcEEEEECCCCceeEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 472 GEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 472 s~Dg~I~iwDl~~~~~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
+.||.|++|| ..+.+..+.. |...+.+++|+++ +. +++++.||.|++||+++++.+..+.+|...|++++|++++
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 9999999999 5667777777 8899999999996 55 8899999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 551 QSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
.|++++.||.|++||+.+++....+
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred -CEEEEecCCEEEEEECCCCceeEEE
Confidence 6999999999999999988765544
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-33 Score=290.51 Aligned_cols=240 Identities=21% Similarity=0.366 Sum_probs=214.7
Q ss_pred CCCCCeeEEEEcCC----CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 008050 284 GDDRPLSGCSYSHD----GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSP-VSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 284 gh~~~I~~~~~spd----g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~ 358 (579)
.|...|++++|+++ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 47889999999999 67999999999999999999999999999999999999999 89999999999999999976
Q ss_pred C-CeeEEE---ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE----------------------------E
Q 008050 359 G-SLLNTF---QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL----------------------------L 406 (579)
Q Consensus 359 ~-~~~~~~---~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~----------------------------~ 406 (579)
. +.+..+ ..|...|.+++|+|++++|++++.||.|++||+.+++... .
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 4 555566 6899999999999999999999999999999998765432 2
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE--------------EEEEecCCCCeEEEEEcCC--CCEEEE
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS--------------ILALEGHVKPVLGISFSPN--GYHLAT 470 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~--------------~~~~~~~~~~I~si~~sp~--g~~l~t 470 (579)
...|...|.+++|+ +.+|++++.||.|++||++++.. +..+..|...|.+++|+++ +.+|++
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 22388999999999 67999999999999999988744 7888899999999999999 999999
Q ss_pred EeCCCcEEEEECCCCce----eEEEeCC--CCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 471 GGEDNTCRIWDLRKRKS----LYVIPAH--SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~----~~~~~~~--~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
|+.||.|++||+.+++. ...+..| ...|++++|+++ +.+|++++.||.|++||+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD-SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT-SSEEEEEETTSEEEEEEC-
T ss_pred EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC-CCeEEEEeCCCEEEEEEec
Confidence 99999999999998753 4477777 789999999996 8899999999999999975
No 97
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=300.60 Aligned_cols=263 Identities=11% Similarity=0.068 Sum_probs=222.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~ 362 (579)
..-...|.+++|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.++...
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~ 79 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL 79 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCceE
Confidence 34467899999999999999999999999 755554 347999999999999998 677777887655444
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR-----SVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-----~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
..+ .|...|.+++|+|+|.+|++++.||.|++||..+ .+..+. |.. .|.+++|+|||++|++|+.||.|+|
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 333 4478899999999999999999999999999654 555555 554 5999999999999999999999999
Q ss_pred EeCCCCe-------EEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEE-eCCCCCeEEEE
Q 008050 438 WDLRTGR-------SILAL----EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS---LYVI-PAHSNLISQVK 502 (579)
Q Consensus 438 wd~~~~~-------~~~~~----~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~---~~~~-~~~~~~V~~v~ 502 (579)
||+.++. .+.++ .+|...|.+++|+|+| +++++.|++|++||+..+.. ..++ .+|...|.+++
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 9999885 35666 5677899999999999 88899999999999988773 3456 47888999999
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEE--cCCCCEEEEEEcCCeEEEEEcC
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDI--HPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
|+ +.+|++++ +|.|++||+.+++......+|.+.|.++.| ++++..|++++.||+ ++|..+
T Consensus 234 Fs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 234 IV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99 36788776 699999999998885444489999999999 999999999999999 999985
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=320.76 Aligned_cols=247 Identities=19% Similarity=0.332 Sum_probs=218.0
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC--CCeeEEEEeCCCCCeEEEEEccC--CCEEEEEeCCCcEEEE
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP--RLQKFSALKGHTERATDVTFSPV--SNHVATSSADRTARLW 355 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~sp~--~~~l~s~s~dg~I~iw 355 (579)
....||.+.|++++|+|+|++|++|+.||.|+|||+. ++.....+.+|.+.|.+++|+++ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4567999999999999999999999999999999997 56778888999999999999988 9999999999999999
Q ss_pred eCCCC---eeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCeEEEEEcC-------
Q 008050 356 NTDGS---LLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTG--VELLLQEGHSRSVYGIAFHP------- 421 (579)
Q Consensus 356 d~~~~---~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~--~~~~~~~~~~~~V~~l~~sp------- 421 (579)
|+.+. ....+.+|...|.+++|+|+ ++++++|+.||.|++||+.++ .......+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 97654 66778889999999999999 999999999999999999887 33445678999999999999
Q ss_pred ------CCCEEEEEeCCCeEEEEeCCCC----eEEEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc--
Q 008050 422 ------DGSLAASCGLDALARVWDLRTG----RSILALEGHVKPVLGISFSPN---GYHLATGGEDNTCRIWDLRKRK-- 486 (579)
Q Consensus 422 ------dg~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~I~si~~sp~---g~~l~tgs~Dg~I~iwDl~~~~-- 486 (579)
++.++++|+.||.|++||++++ .....+.+|...|++++|+|+ +.+|++|+.||.|++||++++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5889999999999999999887 566778899999999999999 9999999999999999998864
Q ss_pred ---eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 487 ---SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 487 ---~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
.+.....|...|++++|+|+ +.+|++|+.||.|++|++..
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTT-TCCEEEECSSSCEECCBCCS
T ss_pred ceeEEeccCCCCCceEEEEEcCC-CCEEEEEcCCCEEEEEecCC
Confidence 33334457889999999996 78899999999999999873
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=282.38 Aligned_cols=247 Identities=17% Similarity=0.279 Sum_probs=213.2
Q ss_pred cCCCCCeeEEEEcCC---CCEEEEEecCCeEEEEeCCCCe-eEEEEeCCCCCeEEEEE------ccCCCEEEEEeCCCcE
Q 008050 283 SGDDRPLSGCSYSHD---GNLLATSSLSGVVKIWSMPRLQ-KFSALKGHTERATDVTF------SPVSNHVATSSADRTA 352 (579)
Q Consensus 283 ~gh~~~I~~~~~spd---g~~latgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~------sp~~~~l~s~s~dg~I 352 (579)
.+|...|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 378999999999999 6999999999999999999988 88899999999999965 6789999999999999
Q ss_pred EEEeCCCC--eeEEEecccC----CeEEEE----EecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-
Q 008050 353 RLWNTDGS--LLNTFQGHLD----RLARMA----FHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP- 421 (579)
Q Consensus 353 ~iwd~~~~--~~~~~~~h~~----~I~~l~----~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp- 421 (579)
++||+... .+..+..|.+ .+.++. |++++++|++++.||.|++||+.+++.... ..|...|.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRK 220 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCC
Confidence 99996543 5677766554 788888 678999999999999999999999887544 57889999999999
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCCeEEEEE-----ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC--------
Q 008050 422 --DGSLAASCGLDALARVWDLRTGRSILAL-----EGHVKPVLGISFSPNGY-HLATGGEDNTCRIWDLRKR-------- 485 (579)
Q Consensus 422 --dg~~l~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~I~si~~sp~g~-~l~tgs~Dg~I~iwDl~~~-------- 485 (579)
++.+|++|+.||.|++||+++++....+ .+|...|++++|+|++. +|++|+.||.|++||++.+
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence 8999999999999999999887655444 38999999999999998 8999999999999999754
Q ss_pred -----------ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE
Q 008050 486 -----------KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530 (579)
Q Consensus 486 -----------~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 530 (579)
+.+..+..|...|++++|+|++..++++++.||.|++||+.+.+.
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 467778899999999999998544444899999999999987654
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=295.12 Aligned_cols=243 Identities=21% Similarity=0.349 Sum_probs=210.6
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC------------eeEEEeccc------------CCeEEEEEecCC-
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGS------------LLNTFQGHL------------DRLARMAFHPSG- 381 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~------------~~~~~~~h~------------~~I~~l~~sp~~- 381 (579)
|.+.|++++|+|++++|++|+.||.|+||+.... ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 5789999999999999999999999999996543 377888998 889999999998
Q ss_pred -CEEEEEeCCCeEEEEECCCCcEE----------------------------------------EEEecCCCCeEEEEEc
Q 008050 382 -KYLGTTSFDKTWRLWDVDTGVEL----------------------------------------LLQEGHSRSVYGIAFH 420 (579)
Q Consensus 382 -~~l~s~s~dg~I~lwd~~~~~~~----------------------------------------~~~~~~~~~V~~l~~s 420 (579)
.+|++++.|++|++||+.++... ....+|...|++++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999999764432 1235799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCC-eEEEE-------EecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----
Q 008050 421 PDGSLAASCGLDALARVWDLRTG-RSILA-------LEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRKRKS---- 487 (579)
Q Consensus 421 pdg~~l~sg~~dg~I~iwd~~~~-~~~~~-------~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~~~~---- 487 (579)
|++++|++| .||.|++||+++. +.+.. +.+|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 7999999999954 44432 45789999999999998 9999999999999999999887
Q ss_pred eEEEeCCCC------------CeEEEEEeeCCCeEEEEEECCCEEEEEECCC-CeEEEEecCCCCc--------------
Q 008050 488 LYVIPAHSN------------LISQVKFEPQEGYFLVTGSYDMTVKVWSGRD-FKLVKSLSGHEAK-------------- 540 (579)
Q Consensus 488 ~~~~~~~~~------------~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~h~~~-------------- 540 (579)
+..+..|.. .|.+++|+|+ +.+|++++. |.|++||+++ ++++..+.+|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 8999999996 788999988 9999999997 8888888888642
Q ss_pred -EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 541 -VTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 541 -V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
+..++|+|++++|++|+.||.|++||+.+++.
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 33499999999999999999999999988764
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.2e-32 Score=281.90 Aligned_cols=278 Identities=11% Similarity=0.129 Sum_probs=219.2
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCC-C
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV-ATSSADRTARLWNTD-G 359 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~s~s~dg~I~iwd~~-~ 359 (579)
..+|...|.+++|+|||++|++|+.+| ++||++.+++.......+ .+..+.|.++++.+ ++++.|+.|++||.. +
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence 467899999999999999999998775 789999988776654433 58888999988887 567778999999965 4
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCeEEEEEcCCCCEEEE--EeCCCeEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-VELLLQEGHSRSVYGIAFHPDGSLAAS--CGLDALAR 436 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~~~~~~~~~~~~V~~l~~spdg~~l~s--g~~dg~I~ 436 (579)
+.+..+. +...|.++.|+++. ++++ .++.|++||+.++ +.+..+.. ....+++++ .++++ |+.+|.|+
T Consensus 92 ~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 92 QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIH 162 (355)
T ss_dssp EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEE
T ss_pred cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEE
Confidence 5555554 67799999998654 4443 4889999999987 54444333 344556666 45665 58899999
Q ss_pred EEeCCCCe----------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEEe-C-CCCC
Q 008050 437 VWDLRTGR----------------SILALEGHVKPVLGISFSPNGYHLATGGEDNT-CRIWDLRKRKSLYVIP-A-HSNL 497 (579)
Q Consensus 437 iwd~~~~~----------------~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~-I~iwDl~~~~~~~~~~-~-~~~~ 497 (579)
+||++++. .+..+.+|...|++++|+|+|.+|++|+.||+ |+|||+++++++..+. + |...
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~ 242 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD 242 (355)
T ss_dssp EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSC
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCc
Confidence 99999865 26788999999999999999999999999998 9999999999999998 5 9999
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE--EEEec---------------------CCCCcEEEEEEcCCCCEEE
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL--VKSLS---------------------GHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~--~~~l~---------------------~h~~~V~~l~~s~dg~~L~ 554 (579)
|.+++|+|+ +.+|++++.|++|++||+..... ...+. .+......++|+++|++|+
T Consensus 243 v~~~~~s~~-~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 243 VVDMKWSTD-GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp EEEEEECTT-SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred EEEEEECCC-CCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 999999996 88999999999999999875421 11111 1122346789999999999
Q ss_pred EEEcCCeEEEEEcCCCCc
Q 008050 555 TVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~~~ 572 (579)
+++.||.+++|++..++.
T Consensus 322 ~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 322 VWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp EETTTTEEEEEEEEEETT
T ss_pred EEeCCCeEEEEEEEcCCC
Confidence 999999999999876554
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-33 Score=287.35 Aligned_cols=266 Identities=14% Similarity=0.139 Sum_probs=217.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC----------ee
Q 008050 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS----------LL 362 (579)
Q Consensus 293 ~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~----------~~ 362 (579)
.+..++++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.++. .+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678999999999999999999999888876 467888889987 999999999999986532 23
Q ss_pred EEEe-cccCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008050 363 NTFQ-GHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVW 438 (579)
Q Consensus 363 ~~~~-~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iw 438 (579)
..+. +|.+.|.+++|+| ++++|++++.||+|++||+.+++...... .+...+++++|+|++.+|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 3333 5668899999999 99999999999999999999998876664 455689999999999999999999999999
Q ss_pred eCCCCeEE-EEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC---CCCCeE--EEEEeeCCCeEE
Q 008050 439 DLRTGRSI-LALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA---HSNLIS--QVKFEPQEGYFL 511 (579)
Q Consensus 439 d~~~~~~~-~~~~~-~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~---~~~~V~--~v~~sp~~~~~l 511 (579)
|+++++.+ ..+.. |...|++++|+|+|.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|+ +.+|
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS-GKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT-SSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC-CCEE
Confidence 99999987 78888 999999999999999999999 55999999999877655443 333343 6999996 7888
Q ss_pred EEEEC-CCEEEEEECCCCeEEEEecCCCCcEEEEEEcC---CCCEEEEEEcCCeEEEEEcCC
Q 008050 512 VTGSY-DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP---DEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 512 ~sgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
++++. |+.|++|++......... ..+..+.|++ ++..|++++.||.+.++-...
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 88888 999999998654432222 4577888888 888999999999999886543
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.1e-32 Score=281.50 Aligned_cols=247 Identities=14% Similarity=0.088 Sum_probs=217.9
Q ss_pred EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe----eEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEEC
Q 008050 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL----LNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDV 398 (579)
Q Consensus 324 l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~----~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~ 398 (579)
..+|.+.|.+++|+|++.+|++++.||.|++|++.... ...+..|...|.+++|+++++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 35799999999999999999999999999999965544 667778999999999999999 9999999999999999
Q ss_pred -CCCcEEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcCCCC
Q 008050 399 -DTGVELLLQEG--HSRSVYGIAFHPDGSLAASCGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSPNGY 466 (579)
Q Consensus 399 -~~~~~~~~~~~--~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp~g~ 466 (579)
.++.. ..+.+ |...|.+++|++ +.+|++++.||.|++||+++ ++.+..+. |...|.+++|++++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 87765 55667 999999999999 99999999999999999987 66666666 88899999999887
Q ss_pred EEEEEeCCCcEEEEECCC-Cce--eEEEeCCCCCeEEEEEee-CCCeEEEEEECCCEEEEEECCCC------eEEEEecC
Q 008050 467 HLATGGEDNTCRIWDLRK-RKS--LYVIPAHSNLISQVKFEP-QEGYFLVTGSYDMTVKVWSGRDF------KLVKSLSG 536 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~-~~~--~~~~~~~~~~V~~v~~sp-~~~~~l~sgs~dg~I~iwd~~~~------~~~~~l~~ 536 (579)
|++++.|+.|++||+++ +.. ......|...+.+++|+| + +.+|++++.||.|++|++... +.+..+..
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999988 543 334456788999999999 7 688999999999999999876 77777877
Q ss_pred CCC---------cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 537 HEA---------KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 537 h~~---------~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
|.. .|++++|+|++++|++++.||.|++||+.+++....+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence 755 9999999999999999999999999999987765544
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3e-32 Score=289.44 Aligned_cols=247 Identities=23% Similarity=0.457 Sum_probs=220.5
Q ss_pred cccCCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCC----------CeeEEEEeCCCCCeEEEEEccCCC-EEEEEeC
Q 008050 281 TESGDDRPLSGCSYSHD-GNLLATSSLSGVVKIWSMPR----------LQKFSALKGHTERATDVTFSPVSN-HVATSSA 348 (579)
Q Consensus 281 ~~~gh~~~I~~~~~spd-g~~latgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~ 348 (579)
...+|.+.|++++|+|+ +++|++|+.+|.|++|++.+ ...+..+.+|...|.+++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 44578999999999997 78999999999999999986 677888999999999999999988 9999999
Q ss_pred CCcEEEEeCCCC--------eeEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCeEE
Q 008050 349 DRTARLWNTDGS--------LLNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTG---VELLLQEGHSRSVYG 416 (579)
Q Consensus 349 dg~I~iwd~~~~--------~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~---~~~~~~~~~~~~V~~ 416 (579)
||.|++|++... ....+.+|...|.+++|+| ++.+|++++.||.|++||++++ ..+..+..|...|++
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 999999997651 1456778999999999999 6779999999999999999987 466667789999999
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEeCCC-CeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC---------
Q 008050 417 IAFHPDGS-LAASCGLDALARVWDLRT-GRSILALEGHVKPVLGISFSPNG-YHLATGGEDNTCRIWDLRK--------- 484 (579)
Q Consensus 417 l~~spdg~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~I~si~~sp~g-~~l~tgs~Dg~I~iwDl~~--------- 484 (579)
++|+|++. +|++|+.||.|++||+++ +..+..+..|...|.+++|+|++ .+|++++.||.|+|||+..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 99999887 789999999999999998 56788899999999999999988 5799999999999999987
Q ss_pred -----CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 485 -----RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 485 -----~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
...+..+.+|...|.+++|+|++..+|++++.||.|++|++..
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3667778889999999999998555999999999999999764
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=313.82 Aligned_cols=251 Identities=22% Similarity=0.385 Sum_probs=221.2
Q ss_pred EEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC---CCeeEEEecccCCeEEEEEecC--CCEEEEEeCCCeEEEE
Q 008050 322 SALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD---GSLLNTFQGHLDRLARMAFHPS--GKYLGTTSFDKTWRLW 396 (579)
Q Consensus 322 ~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~---~~~~~~~~~h~~~I~~l~~sp~--~~~l~s~s~dg~I~lw 396 (579)
..+.+|.+.|++++|+|++++|++|+.||.|++|+.. +.....+.+|.+.|.+++|+++ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999999999999999999999964 3566788899999999999988 9999999999999999
Q ss_pred ECCCCc--EEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC--eEEEEEecCCCCeEEEEEcC-------
Q 008050 397 DVDTGV--ELLLQEGHSRSVYGIAFHPD--GSLAASCGLDALARVWDLRTG--RSILALEGHVKPVLGISFSP------- 463 (579)
Q Consensus 397 d~~~~~--~~~~~~~~~~~V~~l~~spd--g~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~I~si~~sp------- 463 (579)
|+.++. ......+|...|++++|+|+ +.++++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999986 66677789999999999999 999999999999999999987 34566788999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCC----ceeEEEeCCCCCeEEEEEeeCC--CeEEEEEECCCEEEEEECCCCe--
Q 008050 464 ------NGYHLATGGEDNTCRIWDLRKR----KSLYVIPAHSNLISQVKFEPQE--GYFLVTGSYDMTVKVWSGRDFK-- 529 (579)
Q Consensus 464 ------~g~~l~tgs~Dg~I~iwDl~~~----~~~~~~~~~~~~V~~v~~sp~~--~~~l~sgs~dg~I~iwd~~~~~-- 529 (579)
++.+|++|+.||.|++||++++ .....+..|...|++++|+|++ +.+|++|+.||.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999877 5567788899999999999975 7899999999999999998764
Q ss_pred ---EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 530 ---LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 530 ---~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
.+.....|.+.|++++|+|+|++|++|+.||.|++|++..++.
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 3334456889999999999999999999999999999986543
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-33 Score=301.07 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=190.7
Q ss_pred EEEEeCCCcEEEEeCCCCe-----eEEEecccCCeEEEEEecC------CCEEEEEeCCCeEEEEECCCCcE--------
Q 008050 343 VATSSADRTARLWNTDGSL-----LNTFQGHLDRLARMAFHPS------GKYLGTTSFDKTWRLWDVDTGVE-------- 403 (579)
Q Consensus 343 l~s~s~dg~I~iwd~~~~~-----~~~~~~h~~~I~~l~~sp~------~~~l~s~s~dg~I~lwd~~~~~~-------- 403 (579)
|++++.|++|+||++++.. ...+..|.+.|.+++|+|+ +.+|++++.||+|++||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 3445678999999965432 2346678899999999997 57999999999999999987632
Q ss_pred ---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEecCCCCeEEE--EEcCCC-CEEEEEeCCCc
Q 008050 404 ---LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGR-SILALEGHVKPVLGI--SFSPNG-YHLATGGEDNT 476 (579)
Q Consensus 404 ---~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~I~si--~~sp~g-~~l~tgs~Dg~ 476 (579)
...+.+|...|++++|++++ .|++|+.||+|++||++++. ....+.+|...|.+| +|+++| ++|++|+.|++
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t 334 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY 334 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe
Confidence 23566899999999999864 89999999999999999764 456788999999999 578888 89999999999
Q ss_pred EEEEECCCCceeEEEeCCCC--CeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEE
Q 008050 477 CRIWDLRKRKSLYVIPAHSN--LISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 477 I~iwDl~~~~~~~~~~~~~~--~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~ 554 (579)
|+|||+++++++..+.+|.. .|.+++|+|+ +..|++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|+
T Consensus 335 vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~ 413 (524)
T 2j04_B 335 FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL 413 (524)
T ss_dssp EEEECGGGHHHHCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred EEEEECCCCCcccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE
Confidence 99999999888777766643 4788999997 66789999999999999999988888889999999999999999999
Q ss_pred EEEcCCeEEEEEcCCC
Q 008050 555 TVSHDRWIKLWSTRNK 570 (579)
Q Consensus 555 s~s~Dg~I~iW~~~~~ 570 (579)
+|+.||+|++|++..+
T Consensus 414 Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 414 AGSADGSLIITNAARR 429 (524)
T ss_dssp EEETTTEEECCBSCSS
T ss_pred EEECCCEEEEEechHh
Confidence 9999999999998643
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.5e-31 Score=276.72 Aligned_cols=278 Identities=11% Similarity=0.111 Sum_probs=238.2
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE-----EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-C
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS-----ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-S 360 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~ 360 (579)
..+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++||... +
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456699999988888888889999999999998887 3457899999999999999999999999999999654 6
Q ss_pred eeEEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe--------C
Q 008050 361 LLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG--------L 431 (579)
Q Consensus 361 ~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~--------~ 431 (579)
.+..+..|...+.+++|+++++++++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 7778888999999999999999886555 7999999999999887776544 4599999999999998888 5
Q ss_pred CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 432 DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHL-ATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l-~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
||.|++||+++++.+..+ .+...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+ +.+
T Consensus 282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d-g~~ 358 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD-GKY 358 (433)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT-SSE
T ss_pred CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC-CCE
Confidence 889999999999877665 355578999999999755 566899999999999998888776 5677999999997 566
Q ss_pred EEEEEC---------------CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc-CCeEEEEEcCC
Q 008050 511 LVTGSY---------------DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH-DRWIKLWSTRN 569 (579)
Q Consensus 511 l~sgs~---------------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~iW~~~~ 569 (579)
|++++. ||.|++||..+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++..
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 666655 57999999999999988876 457999999999999998875 99999999863
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.5e-30 Score=267.13 Aligned_cols=271 Identities=15% Similarity=0.172 Sum_probs=227.8
Q ss_pred CEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCC-CeeEEEecccCCeEEEE
Q 008050 299 NLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHV-ATSSADRTARLWNTDG-SLLNTFQGHLDRLARMA 376 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~s~s~dg~I~iwd~~~-~~~~~~~~h~~~I~~l~ 376 (579)
.++++++.||.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||... +.+..+..+ ..+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceE
Confidence 467888999999999999999999888765 58999999999987 6667899999999754 455555544 4899999
Q ss_pred EecCCCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCeEEEEEecCCC
Q 008050 377 FHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA-ASCGLDALARVWDLRTGRSILALEGHVK 454 (579)
Q Consensus 377 ~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l-~sg~~dg~I~iwd~~~~~~~~~~~~~~~ 454 (579)
|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+++++.+ ++++.++.|++||+.+++.+..+..+.
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR- 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-
Confidence 999999886555 6799999999999888777644 578999999999977 678889999999999999988887664
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE---CCCEEEEEECCCCeE
Q 008050 455 PVLGISFSPNGYHL-ATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS---YDMTVKVWSGRDFKL 530 (579)
Q Consensus 455 ~I~si~~sp~g~~l-~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs---~dg~I~iwd~~~~~~ 530 (579)
.+.+++|+++|++| ++++.++.|++||+++++.+..+.. ...+.+++|+++ +.+|++++ .++.|++||+.+++.
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~-g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE-GTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT-SSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC-CCEEEEEecCcCCCcEEEEECCCCeE
Confidence 57999999999887 5677889999999999988877764 467899999997 55555555 789999999999999
Q ss_pred EEEecCCCCcEEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCCccccc
Q 008050 531 VKSLSGHEAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 531 ~~~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++....+
T Consensus 237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 98888765 48999999999987 56678999999999987665544
No 109
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.1e-32 Score=288.74 Aligned_cols=251 Identities=20% Similarity=0.249 Sum_probs=207.4
Q ss_pred EEeCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEE
Q 008050 323 ALKGHTERATDVTFSP-VSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd 397 (579)
...+|...|+||+|+| ++++|++|+.||.|+|||+... ....+.+|.+.|++++|+| ++++|++++.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4456889999999999 5678999999999999996543 3445568999999999998 688999999999999999
Q ss_pred CCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCC
Q 008050 398 VDTGVELLLQEGH--SRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY-HLATGGED 474 (579)
Q Consensus 398 ~~~~~~~~~~~~~--~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~-~l~tgs~D 474 (579)
++++........+ ...+.+++|++++.+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. +|++|+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 9877655444333 3457899999999999999999999999986 456777889999999999999875 78899999
Q ss_pred CcEEEEECCCCceeEE---EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCC------cEEEEE
Q 008050 475 NTCRIWDLRKRKSLYV---IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA------KVTSLD 545 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~---~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~ 545 (579)
+.|+|||+++.+.... ...|...|++++|+|+ +.+|++|+.||.|+|||+.++.....+..|.. .+..+.
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD-GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT-SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCC-CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 9999999988765433 3568899999999996 78999999999999999999988777766543 234567
Q ss_pred EcCCCCEEEEEEc------------CCeEEEEEcCCCCcccc
Q 008050 546 IHPDEQSIATVSH------------DRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 546 ~s~dg~~L~s~s~------------Dg~I~iW~~~~~~~~~~ 575 (579)
|++++.++++++. ++.|++|+..++.....
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 8888777777652 35799999988776543
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.4e-31 Score=280.99 Aligned_cols=279 Identities=13% Similarity=0.124 Sum_probs=202.3
Q ss_pred CeeEEEEc---CCCCEEEEEecCCeEEEEeCCCC----------eeEEEEeCCCCCeEEEEEc-----------------
Q 008050 288 PLSGCSYS---HDGNLLATSSLSGVVKIWSMPRL----------QKFSALKGHTERATDVTFS----------------- 337 (579)
Q Consensus 288 ~I~~~~~s---pdg~~latgs~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~s----------------- 337 (579)
...++.|. +++..|+.++.++.|.+|+.... ..+.. ..+...+..+.|+
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFT-IQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEE-EECSSCEEEEEECTTCEEECC---------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEE-EecCCCeeeEeecCCccccccccCCCccee
Confidence 44556663 44444444455888999975311 11111 1244455555554
Q ss_pred ---cCCCEEEEEeCCCcEEEEeCCCCee------EEEecccCCeEEEEEec--------CCCEEEEEeCCCeEEEEECCC
Q 008050 338 ---PVSNHVATSSADRTARLWNTDGSLL------NTFQGHLDRLARMAFHP--------SGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 338 ---p~~~~l~s~s~dg~I~iwd~~~~~~------~~~~~h~~~I~~l~~sp--------~~~~l~s~s~dg~I~lwd~~~ 400 (579)
+++.+|++++.|++|+|||...... ..+.+|.+.|++++|+| ++++|++++.|++|++||+.+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3456799999999999999665432 23568999999999998 789999999999999999999
Q ss_pred CcEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEE-------------------------ecCCC
Q 008050 401 GVELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILAL-------------------------EGHVK 454 (579)
Q Consensus 401 ~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~-------------------------~~~~~ 454 (579)
+..+.....|...+.+++|+|++. +|++|+.||.|++||+++++..... .+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 888888889999999999999874 8999999999999999987654322 35667
Q ss_pred CeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEE------------------Eee-CCCeEEEEE
Q 008050 455 PVLGISFS-PNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK------------------FEP-QEGYFLVTG 514 (579)
Q Consensus 455 ~I~si~~s-p~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~------------------~sp-~~~~~l~sg 514 (579)
.+.++.|+ ++|..|++++.|+++++||+..++....+..|...+..+. |++ .++.++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 78899987 6999999999999999999988776666655544333332 222 345677888
Q ss_pred ECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 515 SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 515 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+.||.|++||+.+++.+..+..|...|.+++|+|||++|++++.|| +.+|++.
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 8999999999999998888888999999999999999999998766 7777654
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=271.48 Aligned_cols=283 Identities=21% Similarity=0.312 Sum_probs=208.3
Q ss_pred cCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCC---CEEEEEeCCCcEEEEeCC
Q 008050 283 SGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVS---NHVATSSADRTARLWNTD 358 (579)
Q Consensus 283 ~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~---~~l~s~s~dg~I~iwd~~ 358 (579)
.+|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|++.+ .++++++.||.|++||+.
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 36999999999999 78899999999999999999999888877 78899999999854 499999999999999965
Q ss_pred -CCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCc-EEEEE---------------ecCCCCeEEEEEc
Q 008050 359 -GSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGV-ELLLQ---------------EGHSRSVYGIAFH 420 (579)
Q Consensus 359 -~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~-~~~~~---------------~~~~~~V~~l~~s 420 (579)
++.+..+..|...|.+++|+|++. +|++++.||.|++||+.++. .+..+ ..|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 567788889999999999999998 58899999999999998765 22222 4688899999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC
Q 008050 421 PDGSLAASCGLDALARVWDLRTGRSILALEGHV-----KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS 495 (579)
Q Consensus 421 pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~ 495 (579)
|++.+|++++.||.|++||+++++....+..+. ..+........+..+++++.|+.|++||+.+++.+..+..|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 999999999999999999999987655443221 112222223345567777889999999999999999999999
Q ss_pred CCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcC-CCCEEEEEEcCCeEEEEEcCCC
Q 008050 496 NLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP-DEQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~iW~~~~~ 570 (579)
..|++++|+|+ +.+|++|+.||.|++||+.+++.+.....+... ..+.+ ....+.+++.|+.+++|+....
T Consensus 335 ~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 335 KTVDCCVFQSN-FQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQF 406 (408)
T ss_dssp SCEEEEEEETT-TTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred CeEEEEEEcCC-CCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCccc
Confidence 99999999996 789999999999999999999887665543321 22333 3334566778999999987643
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-29 Score=255.68 Aligned_cols=243 Identities=19% Similarity=0.386 Sum_probs=214.4
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--C
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD--G 359 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~--~ 359 (579)
..+|...|++++|++++++|++|+.||.|++|++.+++.+..+.+|...+.++.+. +..+++++.++.+++|+.. .
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCc
Confidence 45788899999999999999999999999999999999999999999998876664 6899999999999999954 3
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE----EEEEecCCCCeEEEEEcCCCC-E--EEEEeCC
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE----LLLQEGHSRSVYGIAFHPDGS-L--AASCGLD 432 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~----~~~~~~~~~~V~~l~~spdg~-~--l~sg~~d 432 (579)
..+..+.+|...+..+.+++++++|++++.||+|++||+.+++. ......+.+.|.++.+++++. + +++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 56778899999999999999999999999999999999987653 344557788999999999765 3 3456788
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
+.|++||.+......... +...+..+.|++++..+++++ .|+.|+|||+++++++..+.+|.+.|++++|+|+ +.+
T Consensus 221 ~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd-g~~ 298 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD-GAT 298 (318)
T ss_dssp CEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSC
T ss_pred CEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC-CCE
Confidence 999999999888776654 666799999999998888765 7999999999999999999999999999999997 788
Q ss_pred EEEEECCCEEEEEECCCC
Q 008050 511 LVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~ 528 (579)
|++|+.||+|+|||+.+.
T Consensus 299 l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 299 VASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEETTTEEEEECCSCC
T ss_pred EEEEecCCeEEEEECCCC
Confidence 999999999999998754
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.6e-31 Score=277.98 Aligned_cols=255 Identities=22% Similarity=0.414 Sum_probs=213.7
Q ss_pred eecccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 279 DCTESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 279 ~~~~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
.....+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||..
T Consensus 166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECS
T ss_pred EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCC
Confidence 3456689999999999 78999999999999999999999999999999999999997 4699999999999999965
Q ss_pred CC-ee---EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 359 GS-LL---NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 359 ~~-~~---~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
.. .. ..+.+|...|.++.| ++++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +.++++|+.||.
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~ 317 (435)
T 1p22_A 242 SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT 317 (435)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCe
Confidence 43 22 667889999999999 68899999999999999999999999999999999999994 679999999999
Q ss_pred EEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eeEEEeCCCCCeEEEEEee
Q 008050 435 ARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK---------SLYVIPAHSNLISQVKFEP 505 (579)
Q Consensus 435 I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~---------~~~~~~~~~~~V~~v~~sp 505 (579)
|++||+++++.+..+.+|...|.+++| ++.+|++|+.||.|++||++++. ++..+..|.+.|.++.|+
T Consensus 318 i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~- 394 (435)
T 1p22_A 318 IRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD- 394 (435)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-
T ss_pred EEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC-
Confidence 999999999999999999999999999 78899999999999999997765 788899999999999993
Q ss_pred CCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc
Q 008050 506 QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 506 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
+.+|++|+.||.|++||+.+........ ...+..++.|.
T Consensus 395 --~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 395 --EFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp --SSCEEECCSSSEEEEEC-----------------------
T ss_pred --CCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 6679999999999999998776544432 22334444443
No 114
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=3.1e-30 Score=264.98 Aligned_cols=261 Identities=17% Similarity=0.227 Sum_probs=219.9
Q ss_pred EEeCCCCeeEEEEeCCCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCC--CCee-EEEecccCCeEEEEEecCCCEEE
Q 008050 312 IWSMPRLQKFSALKGHTERATDVTFSPV---SNHVATSSADRTARLWNTD--GSLL-NTFQGHLDRLARMAFHPSGKYLG 385 (579)
Q Consensus 312 iwd~~~~~~~~~l~~h~~~V~~l~~sp~---~~~l~s~s~dg~I~iwd~~--~~~~-~~~~~h~~~I~~l~~sp~~~~l~ 385 (579)
.|+....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++|++. +..+ ..+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 4456667778888999999999999999 5999999999999999965 3444 77889999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcC
Q 008050 386 TTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF--HPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSP 463 (579)
Q Consensus 386 s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~--spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp 463 (579)
+++.||.|++||+.++..+. ...|...|++++| ++++.+|++++.||.|++||+++++.+..+..+. .+.++.+..
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC
Confidence 99999999999999988766 4579999999999 8999999999999999999999999998888765 577777764
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEe--CCCCCeEEEEEeeCC---CeEEEEEECCCEEEEEECCCC---eEEEEec
Q 008050 464 NGYHLATGGEDNTCRIWDLRKRKSLYVIP--AHSNLISQVKFEPQE---GYFLVTGSYDMTVKVWSGRDF---KLVKSLS 535 (579)
Q Consensus 464 ~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~--~~~~~V~~v~~sp~~---~~~l~sgs~dg~I~iwd~~~~---~~~~~l~ 535 (579)
..+++++.++.+.+||++......... .+...+.++.+.+.. ...+++++.||.|++|++... ..+..+.
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 478889999999999998765444332 234556667666542 123899999999999999887 5667777
Q ss_pred CCCC------------cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccc
Q 008050 536 GHEA------------KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 536 ~h~~------------~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~ 576 (579)
+|.. .|++++|+|++++|++++.||.|++||+.++.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 7766 6999999999999999999999999999987665544
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=9.3e-31 Score=272.02 Aligned_cols=244 Identities=13% Similarity=0.141 Sum_probs=197.9
Q ss_pred ecccCCCCCeeEEEEcCCCCEEEEE-----------ecCCeEEEEeCCCCeeE----EEE-----eCCCCCeEEEEEccC
Q 008050 280 CTESGDDRPLSGCSYSHDGNLLATS-----------SLSGVVKIWSMPRLQKF----SAL-----KGHTERATDVTFSPV 339 (579)
Q Consensus 280 ~~~~gh~~~I~~~~~spdg~~latg-----------s~dg~I~iwd~~~~~~~----~~l-----~~h~~~V~~l~~sp~ 339 (579)
..+.+|...|.+++++ ++.+++| +.|+.+++|++.+.... ... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 3466888899888775 5566665 35778999998654321 111 124556899999999
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE--EecCCCCeE
Q 008050 340 SNHVATSS--ADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL--QEGHSRSVY 415 (579)
Q Consensus 340 ~~~l~s~s--~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~--~~~~~~~V~ 415 (579)
|++|++++ .|++|+|||...........|...|.+++|+|+|++|++++. +.+++|+..++..+.. ...|...|.
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEE
Confidence 99987655 689999999766544444458889999999999999999885 5566777777765543 346788899
Q ss_pred EEEEcCCCCEEEEEeCCC----eEEEEeCCCCeE----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 008050 416 GIAFHPDGSLAASCGLDA----LARVWDLRTGRS----ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS 487 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~dg----~I~iwd~~~~~~----~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~ 487 (579)
+++|+|++.++++++.++ .+++||+..+.. ...+.+|...|++++|+|+|++|++|+.|++|+|||++++++
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 999999999999999887 688999887654 345778999999999999999999999999999999999999
Q ss_pred eEEE-eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 488 LYVI-PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 488 ~~~~-~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
+..+ .+|...|++++|+|+ +.+|++|+.|++|+||++..
T Consensus 304 ~~~~~~gH~~~V~~v~fSpd-g~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPD-STYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEETTSSSSCEEEEEECTT-SCEEEEEETTSEEEEEECCT
T ss_pred EEEecCcccCCEEEEEECCC-CCEEEEEeCCCeEEEEEcCC
Confidence 9886 689999999999997 88999999999999999853
No 116
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=6.6e-31 Score=276.01 Aligned_cols=247 Identities=18% Similarity=0.305 Sum_probs=213.5
Q ss_pred cccCCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCC-------eeEEEEeCCCCCeEEEEEccCC-CEEEEEeCCCc
Q 008050 281 TESGDDRPLSGCSYSH-DGNLLATSSLSGVVKIWSMPRL-------QKFSALKGHTERATDVTFSPVS-NHVATSSADRT 351 (579)
Q Consensus 281 ~~~gh~~~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~sp~~-~~l~s~s~dg~ 351 (579)
...+|...|++++|+| ++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 3568999999999999 9999999999999999999987 6678899999999999999998 69999999999
Q ss_pred EEEEeCC-CCeeEEE--ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCC-eEEEEEcCCCCEE
Q 008050 352 ARLWNTD-GSLLNTF--QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRS-VYGIAFHPDGSLA 426 (579)
Q Consensus 352 I~iwd~~-~~~~~~~--~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~-V~~l~~spdg~~l 426 (579)
|++||+. ++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.++.|++++.+|
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 9999965 4566677 789999999999999999999999999999999999988887 678765 8999999999999
Q ss_pred EEE---eCCCeEEEEeCCCCeE-EEEEe-cCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-eEEEeC--CCCC
Q 008050 427 ASC---GLDALARVWDLRTGRS-ILALE-GHVKPVLGISFSPNGYHLAT-GGEDNTCRIWDLRKRKS-LYVIPA--HSNL 497 (579)
Q Consensus 427 ~sg---~~dg~I~iwd~~~~~~-~~~~~-~~~~~I~si~~sp~g~~l~t-gs~Dg~I~iwDl~~~~~-~~~~~~--~~~~ 497 (579)
++| +.|+.|++||+++++. +.... .|...+.+++|++++.+|++ |+.||.|++||+.+++. +..+.. |...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7999999999998764 33332 46778999999999999875 55799999999998874 444443 5588
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 530 (579)
|.+++|+|+ +.++++ .++.+++|++.++.+
T Consensus 316 v~~~~~sp~-~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 316 QRGMGYMPK-RGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CSEEEECCG-GGSCGG--GTEEEEEEEEETTEE
T ss_pred ccceEEecc-ccccee--cceeEEEEEcCCCcE
Confidence 999999997 566653 577999999987654
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=5e-30 Score=258.20 Aligned_cols=272 Identities=11% Similarity=0.084 Sum_probs=201.1
Q ss_pred eeEEEEcCCCC---EEEEEecCCeEEEEeCCCC---eeEEEEeCCCCCeEEEEEccCCCEEEE-EeCCCcE-EEEe----
Q 008050 289 LSGCSYSHDGN---LLATSSLSGVVKIWSMPRL---QKFSALKGHTERATDVTFSPVSNHVAT-SSADRTA-RLWN---- 356 (579)
Q Consensus 289 I~~~~~spdg~---~latgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~~l~s-~s~dg~I-~iwd---- 356 (579)
+.++-|-.-|- .+++++ ...|++|+..++ +.++++.+|..+|..+.|.|+..-|++ +-.+=.+ .++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555654443 455554 789999999988 899999999999999999996543332 2221111 1111
Q ss_pred CCC---CeeEEEecccCCeEEEEEecCCCEEEEEe--CCCeEEEEEC-CCCcEEEEEecCCCCeEEEEEcC---CCCEEE
Q 008050 357 TDG---SLLNTFQGHLDRLARMAFHPSGKYLGTTS--FDKTWRLWDV-DTGVELLLQEGHSRSVYGIAFHP---DGSLAA 427 (579)
Q Consensus 357 ~~~---~~~~~~~~h~~~I~~l~~sp~~~~l~s~s--~dg~I~lwd~-~~~~~~~~~~~~~~~V~~l~~sp---dg~~l~ 427 (579)
.++ .......+|...|..+ ++++.+.+++ .|+.|++|++ ..++.+..+.+|...++.++|++ ++.+|+
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 121 1122223444444443 4565555533 5999999999 45888888889999999999999 779999
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEecCC---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEECCCCceeEEE-
Q 008050 428 SCGLDALARVWDLRTGRSILALEGHV---KPVLGISFSPNGYHL------------ATGGEDNTCRIWDLRKRKSLYVI- 491 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~~~~---~~I~si~~sp~g~~l------------~tgs~Dg~I~iwDl~~~~~~~~~- 491 (579)
+|+.|++|+|||+++|+.+.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~ 277 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML 277 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence 99999999999999999999998654 357788999999876 56788999999999999887765
Q ss_pred ----eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEE-EEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 492 ----PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVT-SLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 492 ----~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
.+|...+.+..++ +.++++|+.||+|+|||+.+++++.++.+|...+. +++|+|||++|++|+.|++|+||+
T Consensus 278 ~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 278 YCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred eeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 3565554444443 67899999999999999999999999999987665 589999999999999999999999
Q ss_pred c
Q 008050 567 T 567 (579)
Q Consensus 567 ~ 567 (579)
+
T Consensus 355 ~ 355 (356)
T 2w18_A 355 Y 355 (356)
T ss_dssp E
T ss_pred C
Confidence 6
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.5e-28 Score=256.29 Aligned_cols=281 Identities=20% Similarity=0.157 Sum_probs=229.3
Q ss_pred CCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEE
Q 008050 287 RPLSGCSYSHDGNLL-ATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDGSLLNT 364 (579)
Q Consensus 287 ~~I~~~~~spdg~~l-atgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~~~~~~ 364 (579)
..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.|++||..+.....
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 458999999999977 667789999999999999998888665 999999999999886555 56999999977654444
Q ss_pred EecccCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q 008050 365 FQGHLDRLARMAFHPSGKYL-GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA-ASCGLDALARVWDLRT 442 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l-~sg~~dg~I~iwd~~~ 442 (579)
...+...+.+++|++++++| ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++
T Consensus 111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~ 189 (391)
T 1l0q_A 111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 44455678999999999977 67778999999999999888777655 567999999999877 6777899999999999
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE
Q 008050 443 GRSILALEGHVKPVLGISFSPNGYHLATGG---EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 443 ~~~~~~~~~~~~~I~si~~sp~g~~l~tgs---~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
++.+..+. +...+.+++|+++|.+|++++ .++.|++||+.+++.+..+..|. .+.++.|+|++..++++++.|+.
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~ 267 (391)
T 1l0q_A 190 NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNT 267 (391)
T ss_dssp TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred CeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCE
Confidence 98887776 455689999999999999888 68999999999999998888765 57889999985556678888999
Q ss_pred EEEEECCCCeEEEEecCCCCcEE---EEE------------EcCCC----------CEEEEEEcCCeEEEEEcCCCC
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVT---SLD------------IHPDE----------QSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~---~l~------------~s~dg----------~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|++||+.+++.+..+..|..+.. .+. |+.+. -.+...+.|..+++|++.++.
T Consensus 268 v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 268 VSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred EEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 99999999999988876654421 112 22211 235555678899999997765
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=270.02 Aligned_cols=236 Identities=13% Similarity=0.126 Sum_probs=205.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCC---eeEEEec-------------------------------------
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNT-DGS---LLNTFQG------------------------------------- 367 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~---~~~~~~~------------------------------------- 367 (579)
.++.+++|+++|++|+++ .++.|++||. +++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966655 5789999994 455 4444442
Q ss_pred -----------------ccCCeEEEEEecCCCEE-EEEeCCCeEEEEECC--CCcEEEEEe--cCCCCeEEEEEcCCCCE
Q 008050 368 -----------------HLDRLARMAFHPSGKYL-GTTSFDKTWRLWDVD--TGVELLLQE--GHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 368 -----------------h~~~I~~l~~sp~~~~l-~s~s~dg~I~lwd~~--~~~~~~~~~--~~~~~V~~l~~spdg~~ 425 (579)
|.+.|.+++|+|++++| ++++.||.|++||+. ++..+..+. .|...|++++|+|++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33369999999999996 889999999999999 787777665 56789999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCeEEE----EEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-EeCCCCC
Q 008050 426 AASCGLDALARVWDLRTGRSIL----ALEGHVKPVLGISFSPN---GYHLATGGEDNTCRIWDLRKRKSLYV-IPAHSNL 497 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~~~~----~~~~~~~~I~si~~sp~---g~~l~tgs~Dg~I~iwDl~~~~~~~~-~~~~~~~ 497 (579)
|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +.+|++|+.|+.|++||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998877544 77889999999999999 99999999999999999999998887 5589999
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-------------------------CCCcEEEEEEcCCCCE
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG-------------------------HEAKVTSLDIHPDEQS 552 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-------------------------h~~~V~~l~~s~dg~~ 552 (579)
|.+++|+ + +.+|++|+.|+.|++||+.+++++..+.. +...|.+++|++++++
T Consensus 244 v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred eEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 9999999 5 88999999999999999999998888763 2356999999999999
Q ss_pred EEEEE-cCCeEEEEEc
Q 008050 553 IATVS-HDRWIKLWST 567 (579)
Q Consensus 553 L~s~s-~Dg~I~iW~~ 567 (579)
|++++ .|+.|++|++
T Consensus 322 l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 322 VAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEETTCSEEEEEEE
T ss_pred EEEEECCCCeEEEEEe
Confidence 99999 8999999999
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.8e-29 Score=261.25 Aligned_cols=248 Identities=17% Similarity=0.151 Sum_probs=192.0
Q ss_pred EEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEE-EEEeCC
Q 008050 312 IWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYL-GTTSFD 390 (579)
Q Consensus 312 iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l-~s~s~d 390 (579)
||++.+...+..+..|...|.+++|+|+|.+|++|+.+| +++|+.+....... .+...+..+.+.++++++ ++++.|
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-QEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-EECSCCCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-eecCCeEEEEEcCCCCEEEEEECCc
Confidence 566777777777788999999999999999999988775 78999665333222 222357888999988877 567788
Q ss_pred CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEecCCCCeEEEEEcCCCCEEE
Q 008050 391 KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-RSILALEGHVKPVLGISFSPNGYHLA 469 (579)
Q Consensus 391 g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~I~si~~sp~g~~l~ 469 (579)
++|++||+.+++.+..+. +...|.++.|+++. ++++ .++.|++||+.++ +.+..+.. ....+++++ .+++
T Consensus 81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV 151 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence 999999999999888775 66799999999874 4443 4889999999988 66655554 344566666 4666
Q ss_pred E--EeCCCcEEEEECCCCc----------------eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCE-EEEEECCCCeE
Q 008050 470 T--GGEDNTCRIWDLRKRK----------------SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMT-VKVWSGRDFKL 530 (579)
Q Consensus 470 t--gs~Dg~I~iwDl~~~~----------------~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~-I~iwd~~~~~~ 530 (579)
+ |+.||.|++||++++. .+..+.+|...|++++|+|+ +.+|++|+.||+ |++||+.++++
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEEEEEECCCCcE
Confidence 6 5789999999998765 27888999999999999996 889999999998 99999999999
Q ss_pred EEEec-C-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 531 VKSLS-G-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 531 ~~~l~-~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+..+. + |...|++++|+|+|++|++++.||+|++|++....
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 99998 5 99999999999999999999999999999997654
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=276.16 Aligned_cols=257 Identities=10% Similarity=0.083 Sum_probs=207.8
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~ 362 (579)
.||...|.+++|+|+| .++.+.+|+..... ...+ .|...|.+++|+|+|.+|++++.||.|++|+.++ .+
T Consensus 49 ~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l 118 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-ML 118 (588)
T ss_dssp SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EE
T ss_pred cCCCccEEEEEECCCC-------CcceEEEEeCCCce-Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-ee
Confidence 6899999999999999 46655555543222 2222 4688999999999999999999999999999655 55
Q ss_pred EEEecccC-----CeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE-------EEEE----ecCCCCeEEEEEcCCCCEE
Q 008050 363 NTFQGHLD-----RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE-------LLLQ----EGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 363 ~~~~~h~~-----~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~-------~~~~----~~~~~~V~~l~~spdg~~l 426 (579)
..+. |.. .|.+++|+|+|++|++|+.||+|++||+.++.. +..+ .+|...|.+++|+||| +
T Consensus 119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L 195 (588)
T 2j04_A 119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L 195 (588)
T ss_dssp EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence 5556 665 599999999999999999999999999998852 4554 5677899999999999 8
Q ss_pred EEEeCCCeEEEEeCCCCeE---EEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEE
Q 008050 427 ASCGLDALARVWDLRTGRS---ILAL-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVK 502 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~---~~~~-~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~ 502 (579)
++++.|+.|++||+.++.. ..++ .+|...|.+++|+ |.+|++++ +++|++||+.+++......+|...|..+.
T Consensus 196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va 272 (588)
T 2j04_A 196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIP 272 (588)
T ss_dssp EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEE
T ss_pred EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEE
Confidence 8889999999999988773 3556 4788899999999 68899887 69999999988777444448999999999
Q ss_pred E--eeCCCeEEEEEECCCEEEEEECCCCe-----------------------EEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 503 F--EPQEGYFLVTGSYDMTVKVWSGRDFK-----------------------LVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 503 ~--sp~~~~~l~sgs~dg~I~iwd~~~~~-----------------------~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
| +++ +..|++++.||+ ++|...... .+..+. +...|.+++|||||+.+++++
T Consensus 273 ~~~s~d-~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 273 LNHEKE-STILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ETTCSS-CEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEE
T ss_pred eeeCCC-CCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEE
Confidence 9 986 788999999999 999875321 111111 234589999999999999887
Q ss_pred c
Q 008050 558 H 558 (579)
Q Consensus 558 ~ 558 (579)
.
T Consensus 350 ~ 350 (588)
T 2j04_A 350 D 350 (588)
T ss_dssp E
T ss_pred e
Confidence 3
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=259.06 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=190.1
Q ss_pred EccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC---------CCcEEE
Q 008050 336 FSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD---------TGVELL 405 (579)
Q Consensus 336 ~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~---------~~~~~~ 405 (579)
+..++.+|++|+.||.|++||+. ++.+..+. ...|.++.|+|+ +++++.|++|++|+.. ++..+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 34567899999999999999954 55555555 466788889888 9999999999999765 454344
Q ss_pred EE-ecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 406 LQ-EGHSRSVYGIAFHP--DGSLAASCGLDALARVWDLRTGRSILALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 406 ~~-~~~~~~V~~l~~sp--dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
.. .+|...|.+++|+| +++++++|+.||.|++||+++++.+..+.. +...|.+++|+|+|.+|++|+.||.|++||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 33 36778899999999 999999999999999999999998776643 455799999999999999999999999999
Q ss_pred CCCCcee-EEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC---CCCcEE--EEEEcCCCCEEE
Q 008050 482 LRKRKSL-YVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG---HEAKVT--SLDIHPDEQSIA 554 (579)
Q Consensus 482 l~~~~~~-~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~--~l~~s~dg~~L~ 554 (579)
+++++.+ ..+.. |...|++++|+|+ +.+|++++ ++.|++||+++++.+..+.. |...+. +++|+|+|++|+
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 9999988 78888 9999999999996 78899988 55999999998876655443 434444 699999999999
Q ss_pred EEEc-CCeEEEEEcCCCCc
Q 008050 555 TVSH-DRWIKLWSTRNKGD 572 (579)
Q Consensus 555 s~s~-Dg~I~iW~~~~~~~ 572 (579)
+++. |+.|++|++.....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEETTTTEEEEEEECTTTC
T ss_pred EecCCCCcEEEEEEccccc
Confidence 9998 99999999976544
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.7e-28 Score=254.85 Aligned_cols=287 Identities=12% Similarity=0.084 Sum_probs=232.7
Q ss_pred CCCCeeEEE---EcCCCCEEEEEe--------------cCC--eEEEEeCCCC--eeEEEEeCCCCCeEEEEEccCCCEE
Q 008050 285 DDRPLSGCS---YSHDGNLLATSS--------------LSG--VVKIWSMPRL--QKFSALKGHTERATDVTFSPVSNHV 343 (579)
Q Consensus 285 h~~~I~~~~---~spdg~~latgs--------------~dg--~I~iwd~~~~--~~~~~l~~h~~~V~~l~~sp~~~~l 343 (579)
....+..++ |+++++.+++.+ .++ .|.+||..++ +.+..+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345567777 888777665432 233 4444454334 556666654 456699999977778
Q ss_pred EEEeCCCcEEEEeCCC-CeeE-----EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEE
Q 008050 344 ATSSADRTARLWNTDG-SLLN-----TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGI 417 (579)
Q Consensus 344 ~s~s~dg~I~iwd~~~-~~~~-----~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l 417 (579)
++++.++.|++||..+ +... .+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 8888889999999764 4443 234788899999999999999999999999999999999988888899999999
Q ss_pred EEcCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--------CCCcEEEEECCCCcee
Q 008050 418 AFHPDGSLAAS-CGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--------EDNTCRIWDLRKRKSL 488 (579)
Q Consensus 418 ~~spdg~~l~s-g~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--------~Dg~I~iwDl~~~~~~ 488 (579)
+|+++++.+++ ++.++.|++||+++++.+..+..+. .+.+++|+|+|.+|++++ .||.|++||+++++.+
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 99999997754 4579999999999999888877654 499999999999999988 4889999999998877
Q ss_pred EEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc----------
Q 008050 489 YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH---------- 558 (579)
Q Consensus 489 ~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~---------- 558 (579)
..+ .|...+.+++|+|++..++++++.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++.
T Consensus 297 ~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 297 DTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred eec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence 766 3445788999999866777888999999999999999888876 6778999999999999988876
Q ss_pred -----CCeEEEEEcCCCCcccc
Q 008050 559 -----DRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 559 -----Dg~I~iW~~~~~~~~~~ 575 (579)
||.|++||+.+++....
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEEEE
T ss_pred cccccceEEEEEECCCCcEEEE
Confidence 57999999988765543
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.6e-29 Score=261.15 Aligned_cols=241 Identities=14% Similarity=0.098 Sum_probs=178.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE-----EEeCCCCCeEEEEEcc--------CCCEEEEEeCCC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS-----ALKGHTERATDVTFSP--------VSNHVATSSADR 350 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~sp--------~~~~l~s~s~dg 350 (579)
+|...+....+++++.+|++|+.|++|+|||+.++.... .+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 445555556667778899999999999999998876543 3468999999999998 788999999999
Q ss_pred cEEEEeC-CCCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEE----------------------
Q 008050 351 TARLWNT-DGSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLL---------------------- 406 (579)
Q Consensus 351 ~I~iwd~-~~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~---------------------- 406 (579)
+|+|||+ .+..+..+..|...|.+++|+|++. +|++++.|++|++||+.+++....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 9999996 4567778888999999999999875 899999999999999988754321
Q ss_pred ---EecCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEE------------------cC-
Q 008050 407 ---QEGHSRSVYGIAFH-PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISF------------------SP- 463 (579)
Q Consensus 407 ---~~~~~~~V~~l~~s-pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~------------------sp- 463 (579)
..+|...+.++.|+ +++..|++++.|+.+++||+.+++....+..|...+..+.+ ++
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 23567788899987 79999999999999999999988777666655554444333 33
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 464 -NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 464 -~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
++.++++|+.||.|++||+.++..+..+..|...|.+++|+|+ +++|++++.+| +.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspd-G~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQD-GSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTT-SSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCC-CCEEEEEeCCC-eEEEEEe
Confidence 3456778889999999999999999888889999999999997 78899998766 6666543
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=3.4e-28 Score=246.85 Aligned_cols=254 Identities=19% Similarity=0.226 Sum_probs=191.3
Q ss_pred EeeecccCCCCCeeEEEEcC--CCCEEEEEecCCeEEEEeCCCC---------eeEEEEeCCCCCeEEEEEccC--CCEE
Q 008050 277 YLDCTESGDDRPLSGCSYSH--DGNLLATSSLSGVVKIWSMPRL---------QKFSALKGHTERATDVTFSPV--SNHV 343 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~sp--dg~~latgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~sp~--~~~l 343 (579)
.+.....+|...|++++|++ ++++|++|+.||.|++||+.++ +.+..+..|...|.+++|+|+ +.+|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 34455678999999999999 6999999999999999999876 567888899999999999999 9999
Q ss_pred EEEeCCCcEEEEeCCC-CeeEEE-------------ecccCCeEEEEEecC---CCEEEEEeCCCeEEEEECCCCcE--E
Q 008050 344 ATSSADRTARLWNTDG-SLLNTF-------------QGHLDRLARMAFHPS---GKYLGTTSFDKTWRLWDVDTGVE--L 404 (579)
Q Consensus 344 ~s~s~dg~I~iwd~~~-~~~~~~-------------~~h~~~I~~l~~sp~---~~~l~s~s~dg~I~lwd~~~~~~--~ 404 (579)
++++.||.|++||+.. +.+..+ ..|...+.++.|+|+ +.+|++++.++.+.+|+...+.. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999999543 222211 257788999999997 89999999999999998887765 5
Q ss_pred EEEecCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----CCCc
Q 008050 405 LLQEGHSRSVYGIAFHPDG----SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG----EDNT 476 (579)
Q Consensus 405 ~~~~~~~~~V~~l~~spdg----~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs----~Dg~ 476 (579)
..+.+|...|++++|+|++ .+|++|+.||.|++||++++........+...+....+++....+..+. ....
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 5667899999999999998 8999999999999999988766555444444444444444444444333 4455
Q ss_pred EEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE
Q 008050 477 CRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 477 I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
+.+|+....+.+..+..|...|++++|+|+ +.+|++|+.||.|++|++.+++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLT-GTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSS-SCCEEEEETTSCEEEEEECTTSCE
T ss_pred eeecccccccEEEEEecccccEEEEEEcCC-CCEEEEecCCCcEEEEecCcCcch
Confidence 677777777888899999999999999996 789999999999999999876543
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.8e-27 Score=251.56 Aligned_cols=278 Identities=15% Similarity=0.125 Sum_probs=225.8
Q ss_pred CCeeEEEEcCCCC-EEEEEe----cCC----eEEEEeC--CCCeeE--EEEeCCCCCeEEEEEcc--------------C
Q 008050 287 RPLSGCSYSHDGN-LLATSS----LSG----VVKIWSM--PRLQKF--SALKGHTERATDVTFSP--------------V 339 (579)
Q Consensus 287 ~~I~~~~~spdg~-~latgs----~dg----~I~iwd~--~~~~~~--~~l~~h~~~V~~l~~sp--------------~ 339 (579)
..+....|++.|. ++++|+ .+| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677778888874 666776 467 8999999 888877 45888988888887775 1
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCcEEEEEecC
Q 008050 340 SNHVATSSAD------RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK---TWRLWDVDTGVELLLQEGH 410 (579)
Q Consensus 340 ~~~l~s~s~d------g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg---~I~lwd~~~~~~~~~~~~~ 410 (579)
+..++.++.+ +.|++||.++.....+..|...+.+++|+|+|++|++++.++ .|++||+.+++... +..|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~ 221 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF 221 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecC
Confidence 5666666554 799999998888888999999999999999999999999885 99999999987764 4567
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCC
Q 008050 411 SRSVYGIAFHPDGSLAA-SCGLDA--LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE-DN--TCRIWDLRK 484 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~-sg~~dg--~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~-Dg--~I~iwDl~~ 484 (579)
...+.+++|+|||+.|+ +++.+| .|++||+.+++. ..+..|...+.+++|+|+|++|++++. ++ .|++||+.+
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 78899999999999777 666555 499999998876 567778888999999999999998886 44 688889987
Q ss_pred CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC---CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC-
Q 008050 485 RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD---MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR- 560 (579)
Q Consensus 485 ~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg- 560 (579)
++. ..+..+...+.+++|+|+ +.+|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|++|++++.++
T Consensus 301 ~~~-~~l~~~~~~~~~~~~spd-G~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 301 GAP-QRITWEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp SCC-EECCCSSSEEEEEEECTT-SSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETT
T ss_pred CCE-EEEecCCCcccCeEECCC-CCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCC
Confidence 763 445566778899999997 5666665543 58999999988774 455554 799999999999999988777
Q ss_pred --eEEEEEcCCC
Q 008050 561 --WIKLWSTRNK 570 (579)
Q Consensus 561 --~I~iW~~~~~ 570 (579)
.|++|++..+
T Consensus 377 ~~~l~~~d~~g~ 388 (415)
T 2hqs_A 377 GSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEEEETTSC
T ss_pred ccEEEEEECCCC
Confidence 8999998744
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3e-26 Score=250.35 Aligned_cols=277 Identities=9% Similarity=0.074 Sum_probs=230.4
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC--C-CCeeEEEeccc
Q 008050 293 SYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT--D-GSLLNTFQGHL 369 (579)
Q Consensus 293 ~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~--~-~~~~~~~~~h~ 369 (579)
+|+|++.++++++.++.|.+||..+++.+.++..+.. +.+++|+|+|++|++++.|+.|.+||+ . ++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3889999999999999999999999999999984333 899999999999999999999999998 3 44555565 45
Q ss_pred CCeEEEEEec----CCCEEEEEeC-CCeEEEEECCCCcEEEEEecC-----------CCCeEEEEEcCCCC-EEEEEeCC
Q 008050 370 DRLARMAFHP----SGKYLGTTSF-DKTWRLWDVDTGVELLLQEGH-----------SRSVYGIAFHPDGS-LAASCGLD 432 (579)
Q Consensus 370 ~~I~~l~~sp----~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~-----------~~~V~~l~~spdg~-~l~sg~~d 432 (579)
..+..++|+| +|++|++++. +++|.+||..+++.+..+..+ ...+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5679999999 9999999885 899999999999888776542 23688999999766 55667788
Q ss_pred CeEEEEeCCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeC----CCCCeEEEEEee
Q 008050 433 ALARVWDLRTGRSIL--ALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEP 505 (579)
Q Consensus 433 g~I~iwd~~~~~~~~--~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~----~~~~V~~v~~sp 505 (579)
+.|.+||+.+++.+. .+. +...+.++.|+|+|++|++++ .+++|.+||+.+++++..+.. |.+....+ ++|
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 999999998866443 333 556688999999999877665 588999999999999988875 54433333 467
Q ss_pred CCCeEEEEEE-CCCEEEEEECCC-------CeEEEEecCCCCcEEEEEEcCCCCEEEEEE-------cCCeEEEEEcCCC
Q 008050 506 QEGYFLVTGS-YDMTVKVWSGRD-------FKLVKSLSGHEAKVTSLDIHPDEQSIATVS-------HDRWIKLWSTRNK 570 (579)
Q Consensus 506 ~~~~~l~sgs-~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-------~Dg~I~iW~~~~~ 570 (579)
+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..+.|+|+|++|++++ .+++|.+||+.+.
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 6677777776 589999999998 999999999998899999999999999987 3779999999988
Q ss_pred Ccc
Q 008050 571 GDE 573 (579)
Q Consensus 571 ~~~ 573 (579)
+..
T Consensus 460 ~~~ 462 (543)
T 1nir_A 460 DAK 462 (543)
T ss_dssp TSC
T ss_pred CCC
Confidence 765
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6.9e-27 Score=235.35 Aligned_cols=243 Identities=17% Similarity=0.077 Sum_probs=172.8
Q ss_pred EeeecccCCCCCeeEEEEcCCCC-EEEEEecCC---eEEEEeCCCC----eeEEEEeCCCCCeEEEEEccCCCEEEEEe-
Q 008050 277 YLDCTESGDDRPLSGCSYSHDGN-LLATSSLSG---VVKIWSMPRL----QKFSALKGHTERATDVTFSPVSNHVATSS- 347 (579)
Q Consensus 277 ~l~~~~~gh~~~I~~~~~spdg~-~latgs~dg---~I~iwd~~~~----~~~~~l~~h~~~V~~l~~sp~~~~l~s~s- 347 (579)
.+..+..+|+.+|..+.|.||-. ++.++-.+= .|+..-+... .......+|...|.++ ++++++.+++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~ 153 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGT 153 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEeccc
Confidence 45556667777777777777532 222221110 1111111111 1111112333334443 3455555433
Q ss_pred -CCCcEEEEeC--CCCeeEEEecccCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCC---CCeEEEE
Q 008050 348 -ADRTARLWNT--DGSLLNTFQGHLDRLARMAFHP---SGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS---RSVYGIA 418 (579)
Q Consensus 348 -~dg~I~iwd~--~~~~~~~~~~h~~~I~~l~~sp---~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~---~~V~~l~ 418 (579)
.|+.|++|++ +++.+..+.+|...+..++|++ ++.+|++++.|++|++||+.+++.+..+.+|. ..+.+++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 4888888885 3567778889999999999999 77999999999999999999999999887654 4678889
Q ss_pred EcCCCCEE------------EEEeCCCeEEEEeCCCCeEEEEE-----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 419 FHPDGSLA------------ASCGLDALARVWDLRTGRSILAL-----EGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 419 ~spdg~~l------------~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
|+|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++|+.|++|+|||
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEE
Confidence 99999876 56788999999999999987765 3666555555554 78999999999999999
Q ss_pred CCCCceeEEEeCCCCCeE-EEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 482 LRKRKSLYVIPAHSNLIS-QVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 482 l~~~~~~~~~~~~~~~V~-~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
+.+++++.++.+|...+. .++|+|+ +.+|++|+.|++|+|||+
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPD-G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGT-DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSS-SSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCC-CCEEEEEECCCcEEEecC
Confidence 999999999998877554 6899997 889999999999999985
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.1e-25 Score=242.35 Aligned_cols=286 Identities=10% Similarity=0.036 Sum_probs=231.0
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeC--CCCeeEEEEeCCCCCeEEEEEcc----CCCEEEEEeC-CCcEEEEeCC-CC
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSM--PRLQKFSALKGHTERATDVTFSP----VSNHVATSSA-DRTARLWNTD-GS 360 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~--~~~~~~~~l~~h~~~V~~l~~sp----~~~~l~s~s~-dg~I~iwd~~-~~ 360 (579)
+.+++|+|||++|++++.|+.|.+||+ .+++.+..+. +...+.+++|+| +|++|++++. +++|.+||.. .+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999999999999999999999999 8898888888 456789999999 9999999885 8999999954 45
Q ss_pred eeEEEecc-----------cCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEE
Q 008050 361 LLNTFQGH-----------LDRLARMAFHPSGKY-LGTTSFDKTWRLWDVDTGVELL-LQEGHSRSVYGIAFHPDGSLAA 427 (579)
Q Consensus 361 ~~~~~~~h-----------~~~I~~l~~sp~~~~-l~s~s~dg~I~lwd~~~~~~~~-~~~~~~~~V~~l~~spdg~~l~ 427 (579)
.+..+..+ ...+..+.+++++.. +++...++.|.+||+.+.+.+. ....+...+.++.|+|+|++|+
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 66666542 237889999997765 5566678999999998765433 1224566788899999999776
Q ss_pred EEe-CCCeEEEEeCCCCeEEEEEec----CCCCeEEEEEcCC-CCEEEEEe-CCCcEEEEECCC-------CceeEEEeC
Q 008050 428 SCG-LDALARVWDLRTGRSILALEG----HVKPVLGISFSPN-GYHLATGG-EDNTCRIWDLRK-------RKSLYVIPA 493 (579)
Q Consensus 428 sg~-~dg~I~iwd~~~~~~~~~~~~----~~~~I~si~~sp~-g~~l~tgs-~Dg~I~iwDl~~-------~~~~~~~~~ 493 (579)
+++ .++.|.+||+.+++.+..+.. |.+....+ ++|+ |..++++. .|++|.+||+.+ ++++.++..
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence 554 589999999999999888874 54444444 4676 66666665 689999999988 899999999
Q ss_pred CCCCeEEEEEeeCCCeEEEEEE-------CCCEEEEEECCCCeEE-EEe--------cCCCCcEEEEEEcCCCCEEEEEE
Q 008050 494 HSNLISQVKFEPQEGYFLVTGS-------YDMTVKVWSGRDFKLV-KSL--------SGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs-------~dg~I~iwd~~~~~~~-~~l--------~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
|.+.+..+.++|+ +.+|++++ .+++|.+||+.+++.. ..+ ..+...+.++.|+++|+.|+++.
T Consensus 419 ~g~~~~~v~~~pd-g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 419 QGGGSLFIKTHPK-SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp SCSCCCCEECCTT-CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred CCCCceEEEcCCC-CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 9888888999997 77788776 2679999999988766 443 35677899999999999988764
Q ss_pred -----cCCeEEEEEcCCCCcccccc
Q 008050 558 -----HDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 558 -----~Dg~I~iW~~~~~~~~~~~~ 577 (579)
.|+.|.|||..++++...+.
T Consensus 498 ~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ecCCCCCCeEEEEECCCceEEEeec
Confidence 37999999999998877664
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=4.3e-26 Score=258.35 Aligned_cols=279 Identities=12% Similarity=0.080 Sum_probs=226.8
Q ss_pred CCCeeEEEEcCCCCEEEEEec-CC-----eEEEEeCCCCeeEEEEeCCCC------------------------CeEEEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSL-SG-----VVKIWSMPRLQKFSALKGHTE------------------------RATDVT 335 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~-dg-----~I~iwd~~~~~~~~~l~~h~~------------------------~V~~l~ 335 (579)
...+.+++|||||++|++++. || .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 557999999999999999998 88 899999999988777665433 388999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCC---eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Q 008050 336 FSPVSNHVATSSADRTARLWNTDGS---LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412 (579)
Q Consensus 336 ~sp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 412 (579)
|+|+|++|++++. +.|++|++.+. ....+..+...+..++|+|+|++|++++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999987 99999998776 7777888888999999999999999887 56999999998877665544433
Q ss_pred C----------------eEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEeCCC-
Q 008050 413 S----------------VYGIAFHPDGSLAASCGLDA---------------------------------LARVWDLRT- 442 (579)
Q Consensus 413 ~----------------V~~l~~spdg~~l~sg~~dg---------------------------------~I~iwd~~~- 442 (579)
. +.++.|+|||++|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 46799999999999887765 889999998
Q ss_pred CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEeCCCC----CeEEEEEeeCCCeEE
Q 008050 443 GRSILALE--GHVKPVLGISFSPNGYHLATGGE-----DNTCRIWDLRKRKSLYVIPAHSN----LISQVKFEPQEGYFL 511 (579)
Q Consensus 443 ~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~-----Dg~I~iwDl~~~~~~~~~~~~~~----~V~~v~~sp~~~~~l 511 (579)
++...... .|...+.+++| |||++|++++. ++.|++||+.+++....+..+.. .+..+.|+|+ +.++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd-g~~~ 351 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD-GSIL 351 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT-SCEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC-CeEE
Confidence 87654433 36677999999 99999997764 56899999999988777665443 4568999997 5588
Q ss_pred EEEECCCEEEEEECC-CCeEEEEecCCCCcEEEE-EEcCCCCEEEEEE-cCC--eEEEEEcCC
Q 008050 512 VTGSYDMTVKVWSGR-DFKLVKSLSGHEAKVTSL-DIHPDEQSIATVS-HDR--WIKLWSTRN 569 (579)
Q Consensus 512 ~sgs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l-~~s~dg~~L~s~s-~Dg--~I~iW~~~~ 569 (579)
++++.||.++||.+. ++. ...+..|...|.++ .|+++|+.|+..+ .++ .++||++..
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 888889977777654 345 77888888889887 5999999876544 455 899999864
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=1.6e-24 Score=221.82 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=221.9
Q ss_pred CCCeeEEEEcCCCCEEEEEec-------CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeC
Q 008050 286 DRPLSGCSYSHDGNLLATSSL-------SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADRTARLWNT 357 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~-------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~ 357 (579)
...+..++|+++|++|++++. ++.|.+||..+++.+..+... ..+.+++|++++++++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 346789999999999988874 568999999999988887643 457889999999966555 55799999996
Q ss_pred C-CCeeEEEecccCC---------eEEEEEecCCCEEEEEe--CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 358 D-GSLLNTFQGHLDR---------LARMAFHPSGKYLGTTS--FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 358 ~-~~~~~~~~~h~~~---------I~~l~~sp~~~~l~s~s--~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
. ++.+..+..+... +.++.|+|+++++++++ .++.|.+||..+++....+..+...+.+++|+|+|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 5 4555666554322 68899999999888776 4789999999999888877656666889999999999
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEEec----CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEeCCCCCeEE
Q 008050 426 AASCGLDALARVWDLRTGRSILALEG----HVKPVLGISFSPNGYHLATGGE-DNTCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~~~~~~~~~~----~~~~I~si~~sp~g~~l~tgs~-Dg~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|++|++++. ++.|.+||+.+++.+..+..+.. ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence 99999999999999999998887764 4556889999999998777765 48999999999998888876543 56
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
+.|++++..+++++..++.|.+||..+++.+..+..+ ..+.+++|+++|++|+++..++
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999985556666667999999999999998888754 4689999999999887777653
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=2e-25 Score=235.93 Aligned_cols=263 Identities=11% Similarity=0.054 Sum_probs=210.1
Q ss_pred ccCCCCCeeEEEEcC--------------CCCEEEEEecC------CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCC
Q 008050 282 ESGDDRPLSGCSYSH--------------DGNLLATSSLS------GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSN 341 (579)
Q Consensus 282 ~~gh~~~I~~~~~sp--------------dg~~latgs~d------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 341 (579)
..+|...+..+++++ .+..++.++.+ +.|++||+.. .....+.+|...|.+++|+|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~ 191 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGS 191 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSS
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCC
Confidence 445555666665554 25666666654 7999999974 55677788999999999999999
Q ss_pred EEEEEeCCC---cEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEE-EEeCCC--eEEEEECCCCcEEEEEecCCCCeE
Q 008050 342 HVATSSADR---TARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLG-TTSFDK--TWRLWDVDTGVELLLQEGHSRSVY 415 (579)
Q Consensus 342 ~l~s~s~dg---~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg--~I~lwd~~~~~~~~~~~~~~~~V~ 415 (579)
+|++++.++ .|++||+.+.....+..|...+.+++|+|+|++|+ +++.++ .|++||+.+++. ..+..|...+.
T Consensus 192 ~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~ 270 (415)
T 2hqs_A 192 KLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNT 270 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEE
T ss_pred EEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCccc
Confidence 999999885 99999987766677888889999999999999888 566555 499999998876 45557788899
Q ss_pred EEEEcCCCCEEEEEeC-CC--eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeE
Q 008050 416 GIAFHPDGSLAASCGL-DA--LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---NTCRIWDLRKRKSLY 489 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~-dg--~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---g~I~iwDl~~~~~~~ 489 (579)
+++|+|||++|++++. ++ .|.+||+.+++. ..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++..
T Consensus 271 ~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~- 348 (415)
T 2hqs_A 271 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 348 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred ceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence 9999999998888876 44 788889988764 3455566778999999999999988864 58999999887763
Q ss_pred EEeCCCCCeEEEEEeeCCCeEEEEEECCC---EEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC
Q 008050 490 VIPAHSNLISQVKFEPQEGYFLVTGSYDM---TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ 551 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp~~~~~l~sgs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 551 (579)
.+..+. .+.+++|+|+ +.+|++++.++ .|++||+. +.....+..|.+.|.+++|+|...
T Consensus 349 ~l~~~~-~~~~~~~spd-g~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 349 VLSSTF-LDETPSLAPN-GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCCSS-SCEEEEECTT-SSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EecCCC-CcCCeEEcCC-CCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 455554 8899999997 66666666665 89999986 556778889999999999999654
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=2.8e-24 Score=218.50 Aligned_cols=277 Identities=14% Similarity=0.145 Sum_probs=208.0
Q ss_pred EEcCCCCE-EEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCC-e-eEEEecc
Q 008050 293 SYSHDGNL-LATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA-DRTARLWNTDGS-L-LNTFQGH 368 (579)
Q Consensus 293 ~~spdg~~-latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~~~~-~-~~~~~~h 368 (579)
.|..++++ +++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..+. . ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45666555 6677789999999999999988888777777 9999999997776666 889999997554 4 5566666
Q ss_pred cCCeEEEEEecCCCEEEEEeCCC---eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCe-EEEEeCCCC
Q 008050 369 LDRLARMAFHPSGKYLGTTSFDK---TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA-SCGLDAL-ARVWDLRTG 443 (579)
Q Consensus 369 ~~~I~~l~~sp~~~~l~s~s~dg---~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~-sg~~dg~-I~iwd~~~~ 443 (579)
.....+++|+|+|++++++..++ .|.+||+.+++.+..+.. .....+++|+|+|++++ ++..++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 66655599999999999555553 899999999988776654 45678999999998554 4455678 999998864
Q ss_pred eEEE----EEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce---eEEEeCCCCCeEEEEEeeCCCeEEEEEE
Q 008050 444 RSIL----ALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKS---LYVIPAHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 444 ~~~~----~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~---~~~~~~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
..+. ..........+++|+|+|++|++++ .++.|.+||+.+++. +..+..+ ..+..++|+|++..++++..
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 4331 2223345589999999999766555 688999999999888 7777654 56788999998544555555
Q ss_pred CCCEEEEEECCCCeE--EEEecCC----CCc---EEEEEEcCCCCEEEEEEc-CCeEEEEEcCCCCc
Q 008050 516 YDMTVKVWSGRDFKL--VKSLSGH----EAK---VTSLDIHPDEQSIATVSH-DRWIKLWSTRNKGD 572 (579)
Q Consensus 516 ~dg~I~iwd~~~~~~--~~~l~~h----~~~---V~~l~~s~dg~~L~s~s~-Dg~I~iW~~~~~~~ 572 (579)
.++.|.+||..+++. +..+..+ ... ...++|+|+|++|++++. ++.|.+|++.....
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 688999999999887 4444322 222 255899999999876654 57999999987543
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.7e-24 Score=217.73 Aligned_cols=265 Identities=8% Similarity=0.100 Sum_probs=195.7
Q ss_pred EEEEEecCCeEEEEeCC-CC--eeEEEEeCCCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCC--CCe---eEEEecccC
Q 008050 300 LLATSSLSGVVKIWSMP-RL--QKFSALKGHTERATDVTFSPVSNHVATSSAD-RTARLWNTD--GSL---LNTFQGHLD 370 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~-~~--~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d-g~I~iwd~~--~~~---~~~~~~h~~ 370 (579)
++++++.++.|++|++. ++ +.+.. ..|...+.+++|+|++++|++++.+ +.|.+|+++ +.. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 44444789999999985 33 23333 3477889999999999999988887 999999975 322 23344333
Q ss_pred CeEEEEEecCCCEEEEEeC-CCeEEEEECCCC---cEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Ce
Q 008050 371 RLARMAFHPSGKYLGTTSF-DKTWRLWDVDTG---VELLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDLRT-GR 444 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~---~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~-~~ 444 (579)
.+..++|+|++++|++++. ++.|.+||+..+ ....... ....+.+++|+|+|+++++++ .++.|.+||+.+ ++
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 7899999999998877765 889999999433 3333433 334688999999999888777 899999999987 65
Q ss_pred EEE----EEec-CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC--Cce--eEEEeC---C---CCCeEEEEEeeCCC
Q 008050 445 SIL----ALEG-HVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRK--RKS--LYVIPA---H---SNLISQVKFEPQEG 508 (579)
Q Consensus 445 ~~~----~~~~-~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~--~~~--~~~~~~---~---~~~V~~v~~sp~~~ 508 (579)
... .+.. ....+.+++|+|+|++|++++ .++.|.+||+.. ++. ...+.. . ...+..++|+|++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 243 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 243 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence 432 2232 334688999999999776655 789999999953 332 223321 1 23567899999855
Q ss_pred eEEEEEECCCEEEEEECC----CCeEEEEecCCCCcEEEEEEcCCCCEEEEEE-cCCeEEEEEcC
Q 008050 509 YFLVTGSYDMTVKVWSGR----DFKLVKSLSGHEAKVTSLDIHPDEQSIATVS-HDRWIKLWSTR 568 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~----~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~ 568 (579)
.+++++..++.|.+||+. ..+.+..+..+.. +.+++|+++|++|++++ .++.|.+|++.
T Consensus 244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 555566689999999998 3456666665554 88999999999988887 68999999664
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=6.2e-24 Score=215.54 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=212.1
Q ss_pred CEEEEEecCCeEEEEeCCCCeeEEEEeCCCC--CeEEEEEccCCCEEE-EEeCCCcEEEEeCCC-CeeEEEecc-----c
Q 008050 299 NLLATSSLSGVVKIWSMPRLQKFSALKGHTE--RATDVTFSPVSNHVA-TSSADRTARLWNTDG-SLLNTFQGH-----L 369 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~sp~~~~l~-s~s~dg~I~iwd~~~-~~~~~~~~h-----~ 369 (579)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||..+ +.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999999888764332 588999999998765 455578999999654 555445431 2
Q ss_pred CCeEEEEEecCCCEEEEEe------------CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 008050 370 DRLARMAFHPSGKYLGTTS------------FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARV 437 (579)
Q Consensus 370 ~~I~~l~~sp~~~~l~s~s------------~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~i 437 (579)
..+..++|+|+|++|++++ .++.|.+||+.+++....+.. ...+.+++|+|+|++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2677899999999998886 579999999999887766654 4567889999999988877 689999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEECCCCcee-EEEe
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN------------------------TCRIWDLRKRKSL-YVIP 492 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg------------------------~I~iwDl~~~~~~-~~~~ 492 (579)
||+.+++.+..+..+... ..+.|+|+|.+|+..+..+ .|.+||+.+++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 999999988777654411 1237899988776554332 4689999988764 2334
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
.+...+.+++|+|+ +.+++++ ++.|++||+.+++.+..+..+ ..+.+++|+++|++|++++.++.|++||+.+++.
T Consensus 238 ~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 238 IMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp ECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 45667889999997 5666666 789999999999988887643 4578999999999999999999999999998876
Q ss_pred ccccc
Q 008050 573 EHAMD 577 (579)
Q Consensus 573 ~~~~~ 577 (579)
...+.
T Consensus 314 ~~~~~ 318 (337)
T 1pby_B 314 KGQVD 318 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=5.1e-25 Score=248.66 Aligned_cols=281 Identities=14% Similarity=0.084 Sum_probs=215.5
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC---CeEEEEEccCCCEEEEEeCC---------CcEEEE
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTE---RATDVTFSPVSNHVATSSAD---------RTARLW 355 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~s~s~d---------g~I~iw 355 (579)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999998876 6899999999999988888877765 49999999999999999874 788899
Q ss_pred eCCCCeeEEEec---ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCe------------------
Q 008050 356 NTDGSLLNTFQG---HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSV------------------ 414 (579)
Q Consensus 356 d~~~~~~~~~~~---h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V------------------ 414 (579)
|+.+.....+.. |...+..++|+|+|++|+.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 987655444443 3445889999999999999886 799999999988776655544333
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCeEEEEEecC------CC
Q 008050 415 YGIAFHPDGSLAASCGLDA----------------------------------LARVWDLRTGRSILALEGH------VK 454 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg----------------------------------~I~iwd~~~~~~~~~~~~~------~~ 454 (579)
.+++|+|||+.|++++.++ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999887543 7999999988865666544 56
Q ss_pred CeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEeC-CCCCe----EEEEEeeCCCeEEEE-EECCC------
Q 008050 455 PVLGISFSPNGYHLATGGE----DNTCRIWDLRKRKSLYVIPA-HSNLI----SQVKFEPQEGYFLVT-GSYDM------ 518 (579)
Q Consensus 455 ~I~si~~sp~g~~l~tgs~----Dg~I~iwDl~~~~~~~~~~~-~~~~V----~~v~~sp~~~~~l~s-gs~dg------ 518 (579)
.+.+++|+|||++|++.+. +..|++||+.+++....+.. +...+ ..+.|+|++..+++. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 7899999999998877653 35799999999887766543 33333 378999986555554 56677
Q ss_pred EEEEEE-CCCCe--EEEEecCCCCcEEE-EEEcCCCCEEEEEEcC---CeEEEEEcCCC
Q 008050 519 TVKVWS-GRDFK--LVKSLSGHEAKVTS-LDIHPDEQSIATVSHD---RWIKLWSTRNK 570 (579)
Q Consensus 519 ~I~iwd-~~~~~--~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~D---g~I~iW~~~~~ 570 (579)
.|++|| ..++. +...+..+...+.. ++|+|||++|+..+.+ +.++||++...
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 577777 34443 14455544444554 6999999999876655 78999998654
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=5.3e-24 Score=239.92 Aligned_cols=280 Identities=15% Similarity=0.189 Sum_probs=215.2
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-----C
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-----S 360 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-----~ 360 (579)
...|.+++|||| ++++.+. ++.|++||+.+++... +..+...+.+++|+|+|++|+++ .++.|++|++.+ .
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 467999999999 6666554 6999999998876544 45577789999999999999985 679999999765 4
Q ss_pred eeEE-EecccCC--------------eEEEEEecCCCEEEEEe---------------------------------CCCe
Q 008050 361 LLNT-FQGHLDR--------------LARMAFHPSGKYLGTTS---------------------------------FDKT 392 (579)
Q Consensus 361 ~~~~-~~~h~~~--------------I~~l~~sp~~~~l~s~s---------------------------------~dg~ 392 (579)
.... ...+... +.++.|+|+|++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 3333 2223332 48899999999999987 4478
Q ss_pred EEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeEEEEEe-c-CCC---CeEEEE
Q 008050 393 WRLWDVDTGVELLLQE--GHSRSVYGIAFHPDGSLAASCGLDA-----LARVWDLRTGRSILALE-G-HVK---PVLGIS 460 (579)
Q Consensus 393 I~lwd~~~~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~dg-----~I~iwd~~~~~~~~~~~-~-~~~---~I~si~ 460 (579)
|++||+.+++...... .|...+.+++|+|||+.|++++.++ .|.+||+.+++....+. . +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887655443 4556789999999999999887775 99999999984333332 2 222 246789
Q ss_pred EcC--CCCEEEEEeCCCcEEEEECC-CCceeEEEeCCCCCeEE-EEEeeCCCeEEEEEECCC----EEEEEECCCCeEEE
Q 008050 461 FSP--NGYHLATGGEDNTCRIWDLR-KRKSLYVIPAHSNLISQ-VKFEPQEGYFLVTGSYDM----TVKVWSGRDFKLVK 532 (579)
Q Consensus 461 ~sp--~g~~l~tgs~Dg~I~iwDl~-~~~~~~~~~~~~~~V~~-v~~sp~~~~~l~sgs~dg----~I~iwd~~~~~~~~ 532 (579)
|+| +|++|++++.||.++||++. ++..+..+..+...+.. +.|+|++..++++++.++ .|+.||+.+++ ..
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~ 395 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TK 395 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CE
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ce
Confidence 999 99999999999999999876 66777778777777876 799998655666666665 78888887765 34
Q ss_pred EecCCCCcEEEEEEcCCCCEEEEEEcC----CeEEEEEcCCCC
Q 008050 533 SLSGHEAKVTSLDIHPDEQSIATVSHD----RWIKLWSTRNKG 571 (579)
Q Consensus 533 ~l~~h~~~V~~l~~s~dg~~L~s~s~D----g~I~iW~~~~~~ 571 (579)
.+. |...+.+++|+|||++|+.++.+ +.|++|++.+++
T Consensus 396 ~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 396 DLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 444 66779999999999998776544 569999997764
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=2.3e-24 Score=213.73 Aligned_cols=253 Identities=17% Similarity=0.140 Sum_probs=195.8
Q ss_pred EEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeE-EEecc-cCCeEEEEEec
Q 008050 303 TSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLN-TFQGH-LDRLARMAFHP 379 (579)
Q Consensus 303 tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~-~~~~h-~~~I~~l~~sp 379 (579)
.++.++.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++|+..+ .... ....+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3457899999999988766 4455889999999999999999987 78999999766 4433 33344 36788999999
Q ss_pred CCCEEEEEeC--C--CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCC-CeEEEEEecCC
Q 008050 380 SGKYLGTTSF--D--KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA-SCGLDALARVWDLRT-GRSILALEGHV 453 (579)
Q Consensus 380 ~~~~l~s~s~--d--g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~-sg~~dg~I~iwd~~~-~~~~~~~~~~~ 453 (579)
++++|++++. + ..|..|++.++... .+.. ...+.+++|+|+++.|+ +++.++.+.||+++. +.....+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceE-Eeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 9999999983 3 45555565555533 3323 33589999999999776 778899999998642 33445666777
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECC-----------CEE
Q 008050 454 KPVLGISFSPNGYHLATGG-EDNTCRIWDLR-KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYD-----------MTV 520 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~-~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d-----------g~I 520 (579)
..+.+++|+|+|++|++++ .++.+.||++. .+..+..+..|...+..+.|+|+ +.+|++++.+ +.|
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPS-GDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTT-SSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCC-CCEEEEEEcCCCCCcccccCceEE
Confidence 8899999999999888776 58999999986 56667777778788999999997 5666666554 579
Q ss_pred EEEECCCCeE--EEEecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 521 KVWSGRDFKL--VKSLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 521 ~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
++||+.+++. +..+.+|...+.+++|+|+|++|++++.|.
T Consensus 252 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 252 QLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999988754 455557888899999999999998887664
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=4.3e-24 Score=241.91 Aligned_cols=278 Identities=10% Similarity=0.071 Sum_probs=218.5
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ--KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~ 364 (579)
..|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|+|++|++++. +.|++|+..+.....
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 34788999999999999986 999999998873 44556778889999999999999999874 689999987765544
Q ss_pred Eec-ccC----------------CeEEEEEecCCCEEEEEeCCC---------------------------------eEE
Q 008050 365 FQG-HLD----------------RLARMAFHPSGKYLGTTSFDK---------------------------------TWR 394 (579)
Q Consensus 365 ~~~-h~~----------------~I~~l~~sp~~~~l~s~s~dg---------------------------------~I~ 394 (579)
+.. +.. .+..+.|+|+|++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 432 222 147899999999999988765 899
Q ss_pred EEECCC-CcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEecCCC----CeEEEEEc
Q 008050 395 LWDVDT-GVELLLQE--GHSRSVYGIAFHPDGSLAASCGL-----DALARVWDLRTGRSILALEGHVK----PVLGISFS 462 (579)
Q Consensus 395 lwd~~~-~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~-----dg~I~iwd~~~~~~~~~~~~~~~----~I~si~~s 462 (579)
+||+.+ ++...... .|...+.+++| |||+.|++++. ++.|++||+.+++....+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 87655543 36678999999 99998887654 56899999999988777765543 45689999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceeEEEeCCCCCeEEE-EEeeCCCeEEEEEECCC--EEEEEECCC-CeEEEEecCC
Q 008050 463 PNGYHLATGGEDNTCRIWDLR-KRKSLYVIPAHSNLISQV-KFEPQEGYFLVTGSYDM--TVKVWSGRD-FKLVKSLSGH 537 (579)
Q Consensus 463 p~g~~l~tgs~Dg~I~iwDl~-~~~~~~~~~~~~~~V~~v-~~sp~~~~~l~sgs~dg--~I~iwd~~~-~~~~~~l~~h 537 (579)
|+|+++++++.||.+.||.+. .+. ...+..|...+..+ .|++++..++++++.++ .++||++.. +.....+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 999999999999988887765 344 77777777788887 59998655666666666 899998754 555566665
Q ss_pred CCcEEEEEEcCCCCEEEEEEcC----CeEEEEEcCC
Q 008050 538 EAKVTSLDIHPDEQSIATVSHD----RWIKLWSTRN 569 (579)
Q Consensus 538 ~~~V~~l~~s~dg~~L~s~s~D----g~I~iW~~~~ 569 (579)
...+.+++|+|||++|+....+ +.+.+|+...
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 5668999999999998776544 5688998754
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2.7e-23 Score=244.60 Aligned_cols=277 Identities=12% Similarity=0.050 Sum_probs=229.4
Q ss_pred CCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC-CeEEEEEccCCCEEEEEeCCCcEE-EEeCCCCe
Q 008050 285 DDRPLSGCSYS-HDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTE-RATDVTFSPVSNHVATSSADRTAR-LWNTDGSL 361 (579)
Q Consensus 285 h~~~I~~~~~s-pdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~sp~~~~l~s~s~dg~I~-iwd~~~~~ 361 (579)
|...+.+++|| |||++|++++ ++.|++|++.++... .+..|.. .+.+++|+ +|+.|++++.++.+. +|+..+..
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 44579999999 9999999988 899999999877654 4667777 89999999 999999999888888 99987776
Q ss_pred eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--------
Q 008050 362 LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA-------- 433 (579)
Q Consensus 362 ~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg-------- 433 (579)
...+.+|...+..++|+|+|++|++++.++.|++||+.+++......+|...+.+++|+|||++|++++.++
T Consensus 371 ~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~ 450 (1045)
T 1k32_A 371 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 450 (1045)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCC
Confidence 666678888999999999999999999999999999999988888778989999999999999998887654
Q ss_pred --eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------
Q 008050 434 --LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK------------------------- 486 (579)
Q Consensus 434 --~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~------------------------- 486 (579)
.|++||+.+++ ...+..|...+.+++|+|+|++|++++.++...+|+.....
T Consensus 451 ~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1045)
T 1k32_A 451 MQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 529 (1045)
T ss_dssp EEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred CCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence 89999999887 66777788889999999999999999988777777643221
Q ss_pred ------------------eeEEEeCCCCCeEEEEEeeCCCeEEEE-------------EECCCEEEEEECCCCeEEEEec
Q 008050 487 ------------------SLYVIPAHSNLISQVKFEPQEGYFLVT-------------GSYDMTVKVWSGRDFKLVKSLS 535 (579)
Q Consensus 487 ------------------~~~~~~~~~~~V~~v~~sp~~~~~l~s-------------gs~dg~I~iwd~~~~~~~~~l~ 535 (579)
.+..+..|.+.+..+.++++ +.++++ ....+.|++||+.+++.....
T Consensus 530 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~d-g~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~- 607 (1045)
T 1k32_A 530 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES-SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK- 607 (1045)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS-EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-
T ss_pred cCccccccccccccCHhHceEEcCCCCCChhheEEcCC-CeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-
Confidence 12233345677889999997 565654 123567899999888754333
Q ss_pred CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 536 GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 536 ~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
..+.+++||+||++|++++.| .|++|++.++.
T Consensus 608 ---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 ---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp ---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 568899999999999999866 79999998876
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3.6e-23 Score=243.49 Aligned_cols=278 Identities=12% Similarity=0.073 Sum_probs=231.8
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR-LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL 361 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~ 361 (579)
.+|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..|. .+..++|+|+|++|+++. ++.|++|+..+..
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE
Confidence 689999999999998 6777888889999998753 44455566555 467789999999988874 8999999986665
Q ss_pred eEEEec-----------ccCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEE
Q 008050 362 LNTFQG-----------HLDRLARMAFH-PSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR-SVYGIAFHPDGSLAAS 428 (579)
Q Consensus 362 ~~~~~~-----------h~~~I~~l~~s-p~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-~V~~l~~spdg~~l~s 428 (579)
+..+.. |...+.+++|+ |+|++|++++ ++.|++|++.++.... ...|.. .+.+++|+ ||+.|++
T Consensus 277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEE
T ss_pred eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEE
Confidence 555544 34468999999 9999999888 8899999998877554 445666 89999999 9999999
Q ss_pred EeCCCeEE-EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCC
Q 008050 429 CGLDALAR-VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 429 g~~dg~I~-iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~ 507 (579)
++.++.+. +||+.+++... +..|...+.+++|+|+|++|++++.++.|++||+.+++....+..|...+.+++|+|+
T Consensus 354 ~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD- 431 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDN- 431 (1045)
T ss_dssp EETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT-
T ss_pred EECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCC-
Confidence 98888899 99998776543 3477788999999999999999999999999999999888888788889999999997
Q ss_pred CeEEEEEECC----------CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 508 GYFLVTGSYD----------MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 508 ~~~l~sgs~d----------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
+.+|++++.+ +.|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+...
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 6666666554 489999999888 667888888899999999999999999988888887643
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=2.6e-22 Score=203.99 Aligned_cols=263 Identities=14% Similarity=0.134 Sum_probs=189.1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC-CeEEEEeCC--CCe--eEEEEeCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeC
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLS-GVVKIWSMP--RLQ--KFSALKGHTERATDVTFSPVSNHVATSSA-DRTARLWNT 357 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~d-g~I~iwd~~--~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~ 357 (579)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++. .+..+..+. .+.+++|+|++++|++++. ++.|.+|++
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 466789999999999999988876 999999997 444 344555444 8899999999998877765 789999997
Q ss_pred C-C--CeeEEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC-CcEEE----EEe-cCCCCeEEEEEcCCCCEEE
Q 008050 358 D-G--SLLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDT-GVELL----LQE-GHSRSVYGIAFHPDGSLAA 427 (579)
Q Consensus 358 ~-~--~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~-~~~~~----~~~-~~~~~V~~l~~spdg~~l~ 427 (579)
. + ............+.+++|+|+++++++++ .++.|++||+.+ ++... ... .....+.+++|+|++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 3 2 12222223345688999999999888887 899999999987 54432 222 2345788999999999765
Q ss_pred EEe-CCCeEEEEeCCC--CeE--EEEEec---C---CCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC----CCceeEEE
Q 008050 428 SCG-LDALARVWDLRT--GRS--ILALEG---H---VKPVLGISFSPNGYHLATGG-EDNTCRIWDLR----KRKSLYVI 491 (579)
Q Consensus 428 sg~-~dg~I~iwd~~~--~~~--~~~~~~---~---~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~----~~~~~~~~ 491 (579)
+++ .++.|.+||+.. ++. ...+.. . ...+.+++|+|+|++|+++. .++.|.+||+. +.+.+..+
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 554 889999999953 432 222221 1 23567899999998887554 78999999998 23455556
Q ss_pred eCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEE--ECCCCe--EEEEecCCCCcEEEEEEcCCC
Q 008050 492 PAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVW--SGRDFK--LVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 492 ~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iw--d~~~~~--~~~~l~~h~~~V~~l~~s~dg 550 (579)
..+.. +..++|+++ +.+|++++ .++.|.+| |..+++ .+..+... ....+++|.++.
T Consensus 274 ~~~~~-~~~~~~s~d-g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 274 PTETQ-PRGFNVDHS-GKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp ECSSS-CCCEEECTT-SSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred cCCCc-cceEEECCC-CCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 55544 888999997 55555555 68999999 555654 34444432 345677776644
No 143
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=3.1e-23 Score=228.54 Aligned_cols=266 Identities=14% Similarity=0.078 Sum_probs=206.4
Q ss_pred CCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCeeEEEEeCCC-CCeEEEEEccCCCEEEEEeC---CCcEEEEe--C--
Q 008050 287 RPLSGCSYSHDGNLLATSSL-SGVVKIWSMPRLQKFSALKGHT-ERATDVTFSPVSNHVATSSA---DRTARLWN--T-- 357 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~-dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~s~s~---dg~I~iwd--~-- 357 (579)
.+|.+++|+|||++||+++. ||.+.||++.+++. ..+..|. ..+.++.|+|+ +++++++. +....+|. .
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 36999999999999999887 99999999966554 4455555 68999999999 77777765 45556654 5
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCE-EEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKY-LGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD---- 432 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~-l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d---- 432 (579)
.+... .+... ..+...+|+|+|+. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 54443 33222 23456788888863 3344445555699999987766654443 789999999999988877
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEeCCCCCeEEEE--------
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN--TCRIWDLRKRKSLYVIPAHSNLISQVK-------- 502 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg--~I~iwDl~~~~~~~~~~~~~~~V~~v~-------- 502 (579)
+.|++||+.+++.. .+..|...+.+++|+|||++|+++..++ .|++||+.+++.. .+..|...+..+.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 78999999988765 6677888899999999999999888888 8999999988877 6677776666667
Q ss_pred EeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCe---EEEEEcC
Q 008050 503 FEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRW---IKLWSTR 568 (579)
Q Consensus 503 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~---I~iW~~~ 568 (579)
|+|++ .++++++.+|.+++|++ ++.+. .+.+.|.+++|+ +|+++++++.+.+ |++|+..
T Consensus 253 ~spdg-~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 253 YLPDG-RLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ECTTS-CEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EcCCC-cEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 99985 89999999999999999 66554 345678999999 9999998887754 6666654
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=4e-23 Score=232.67 Aligned_cols=276 Identities=11% Similarity=0.112 Sum_probs=207.6
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE-EEEeCCC-----------------CCeEEEEEccCCCEEEEEeCC
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF-SALKGHT-----------------ERATDVTFSPVSNHVATSSAD 349 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~-~~l~~h~-----------------~~V~~l~~sp~~~~l~s~s~d 349 (579)
.+..+.|. |+.+++++.+| | +||+.+++.+ ..+..|. ..|.+++|+|+ ..++.+. +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35567788 66777777777 8 9999998873 3333332 56999999999 6666554 5
Q ss_pred CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----CcEEEEEecCCCC-----------
Q 008050 350 RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-----GVELLLQEGHSRS----------- 413 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-----~~~~~~~~~~~~~----------- 413 (579)
+.|++||+.+.....+..+...+.+++|+|+|++|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 99999998887777777788889999999999999985 689999999998 7766544333332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCeEEEEEe--cCCCC
Q 008050 414 ---VYGIAFHPDGSLAASCG---------------------------------LDALARVWDLRTGRSILALE--GHVKP 455 (579)
Q Consensus 414 ---V~~l~~spdg~~l~sg~---------------------------------~dg~I~iwd~~~~~~~~~~~--~~~~~ 455 (579)
+.++.|+|||++|++++ .++.|++||+.+++...... .|...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 47899999999999887 44689999999988654442 45567
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe--CCCC---CeEEEEEee--CCCeEEEEEECCCEEEEE
Q 008050 456 VLGISFSPNGYHLATGGEDN-----TCRIWDLRKRKSLYVIP--AHSN---LISQVKFEP--QEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 456 I~si~~sp~g~~l~tgs~Dg-----~I~iwDl~~~~~~~~~~--~~~~---~V~~v~~sp--~~~~~l~sgs~dg~I~iw 523 (579)
+.+++|+|+|++|++++.++ .|++||+.+++....+. .+.. .+..+.|+| + +.++++++.||.++||
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d-g~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN-NQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS-SEEEEEECTTSSCEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC-CEEEEEEccCCccEEE
Confidence 89999999999999988765 89999999884333332 2222 246789999 7 6788888889999999
Q ss_pred ECC-CCeEEEEecCCCCcEEE-EEEcCCCCEEEEEEcC-C----eEEEEEcCCCC
Q 008050 524 SGR-DFKLVKSLSGHEAKVTS-LDIHPDEQSIATVSHD-R----WIKLWSTRNKG 571 (579)
Q Consensus 524 d~~-~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~D-g----~I~iW~~~~~~ 571 (579)
.+. ++..+..+..|...+.+ ++|+|+|+.|+.++.+ + .|+.|++.++.
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 876 67778888888888877 7999999988766544 3 67777776544
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=1.7e-21 Score=199.78 Aligned_cols=261 Identities=15% Similarity=0.135 Sum_probs=188.1
Q ss_pred CCeEEEEeCC--CCeeEE-EEeCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCe---eEEEecccCCeEEEEE
Q 008050 307 SGVVKIWSMP--RLQKFS-ALKGHTERATDVTFSPVSNHVATSSA---DRTARLWNTDGSL---LNTFQGHLDRLARMAF 377 (579)
Q Consensus 307 dg~I~iwd~~--~~~~~~-~l~~h~~~V~~l~~sp~~~~l~s~s~---dg~I~iwd~~~~~---~~~~~~h~~~I~~l~~ 377 (579)
++.|.+|+++ +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+.. +..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567777654 455433 2334567788999999999 555544 6899999976543 3344457778899999
Q ss_pred ecCCCEEEEEe-CCCeEEEEECCC-CcE--EEEEec---------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC
Q 008050 378 HPSGKYLGTTS-FDKTWRLWDVDT-GVE--LLLQEG---------HSRSVYGIAFHPDGSLAASCGLDALARVWDLR-TG 443 (579)
Q Consensus 378 sp~~~~l~s~s-~dg~I~lwd~~~-~~~--~~~~~~---------~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~-~~ 443 (579)
+|+|++|++++ .++.|.+|++.. +.. +..... +...+.+++|+|+|+++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 99999998888 679999999963 322 222221 12248899999999976766778999999998 55
Q ss_pred eEEE--EEecC-CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC--Cce--eEEEeCCC------CCeEEEEEeeCCCe
Q 008050 444 RSIL--ALEGH-VKPVLGISFSPNGYHLATG-GEDNTCRIWDLRK--RKS--LYVIPAHS------NLISQVKFEPQEGY 509 (579)
Q Consensus 444 ~~~~--~~~~~-~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~--~~~--~~~~~~~~------~~V~~v~~sp~~~~ 509 (579)
+... .+..+ ...+..++|+|+|++|+++ ..++.|.+|++.. ++. +..+.... ..+..++|+|++..
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 4332 22322 2357889999999976664 5688999999874 432 23333322 34888999998544
Q ss_pred EEEEEECCCEEEEEECC---CCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC-CeEEEEEcC
Q 008050 510 FLVTGSYDMTVKVWSGR---DFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD-RWIKLWSTR 568 (579)
Q Consensus 510 ~l~sgs~dg~I~iwd~~---~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~I~iW~~~ 568 (579)
+++++..++.|.+|++. ..+.+..+..+...+.+++|+|||++|++++.+ +.|.+|++.
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 55777779999999987 346677777777778999999999999888765 899999654
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.5e-21 Score=199.72 Aligned_cols=247 Identities=11% Similarity=0.061 Sum_probs=198.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-------CCcEEEEeCCC-CeeEEEecccCCeEEEEEecCCCEEEEE-eCCCeEEEEE
Q 008050 327 HTERATDVTFSPVSNHVATSSA-------DRTARLWNTDG-SLLNTFQGHLDRLARMAFHPSGKYLGTT-SFDKTWRLWD 397 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~-------dg~I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~dg~I~lwd 397 (579)
....+..++|+++++++++++. ++.|.+||..+ +.+..+. ....+..+.|+++|++++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999999888875 46899999654 4444444 34557889999999966555 4579999999
Q ss_pred CCCCcEEEEEecCCCC---------eEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCC
Q 008050 398 VDTGVELLLQEGHSRS---------VYGIAFHPDGSLAASCG--LDALARVWDLRTGRSILALEGHVKPVLGISFSPNGY 466 (579)
Q Consensus 398 ~~~~~~~~~~~~~~~~---------V~~l~~spdg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~ 466 (579)
..+++.+..+..+... +.++.|+|+|+++++++ .++.|.+||+.+++.+..+..+...+.+++|+|+|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9999887776654322 78899999999777766 488999999999999888876666688999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeC----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEE
Q 008050 467 HLATGGEDNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVT 542 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~~~~~~~~~~----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~ 542 (579)
+|++++.++.|.+||+.+++.+..+.. +...+..++|+|++..+++++..++.|.+||..+++.+..+..+. ..
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~ 275 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL 275 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence 999999999999999999998888765 455688899999865555655567999999999999888876543 25
Q ss_pred EEEEcCCCCEEEEEE-cCCeEEEEEcCCCCccccc
Q 008050 543 SLDIHPDEQSIATVS-HDRWIKLWSTRNKGDEHAM 576 (579)
Q Consensus 543 ~l~~s~dg~~L~s~s-~Dg~I~iW~~~~~~~~~~~ 576 (579)
+++|+++|+++++++ .++.|.+||..+++....+
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 799999999776665 6899999999887665443
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.2e-21 Score=199.70 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=197.9
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCC-CCeEEEEEccCCCEEE-EEeCCCcEEEEeCCC-CeeEEEec
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHT-ERATDVTFSPVSNHVA-TSSADRTARLWNTDG-SLLNTFQG 367 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~-s~s~dg~I~iwd~~~-~~~~~~~~ 367 (579)
++++++++.++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||..+ +....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45688899999999999999999999999888887543 2678999999998765 455689999999765 44444443
Q ss_pred c------cCCeEEEEEecCCCEEEEEeCC------------CeEEEEECCCCcE---EEEEecCCCCeEEEEEcCCCCEE
Q 008050 368 H------LDRLARMAFHPSGKYLGTTSFD------------KTWRLWDVDTGVE---LLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 368 h------~~~I~~l~~sp~~~~l~s~s~d------------g~I~lwd~~~~~~---~~~~~~~~~~V~~l~~spdg~~l 426 (579)
. ...+..++|+|+|++|++++.+ +.|.+||+.+++. +.... +...+.+++|+|+|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 2 2337889999999999998865 8999999988533 23332 334688999999999 5
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEecCCC------------------------CeEEEEEcCCCCE-----------EEEE
Q 008050 427 ASCGLDALARVWDLRTGRSILALEGHVK------------------------PVLGISFSPNGYH-----------LATG 471 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~------------------------~I~si~~sp~g~~-----------l~tg 471 (579)
++++ +.|.+||+.+++.+..+..+.. ...++++++++.. +...
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 5554 3499999999988877654320 2345666654421 1122
Q ss_pred eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEee-CCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCC
Q 008050 472 GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEP-QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDE 550 (579)
Q Consensus 472 s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp-~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg 550 (579)
..++.+.+|++ ..+...+..++|+| + +.+++++ ++.|.+||+.+++.+..+..+ ..+.+++|+++|
T Consensus 240 ~~~~~~~~~~~---------~~~~~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg 306 (349)
T 1jmx_B 240 LKTGKTHTQEF---------ADLTELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKG 306 (349)
T ss_dssp TTTCCEEEEEE---------EECSSCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSS
T ss_pred ccCCcEEeccc---------ccCCCcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCC
Confidence 23344444443 23556788999999 7 5566665 889999999999988877643 357899999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCCcccccc
Q 008050 551 QSIATVSHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 551 ~~L~s~s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
++|++++.++.|++||+.+++....+.
T Consensus 307 ~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEecCCCeEEEEeccccceeeeee
Confidence 999998889999999998877665543
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=3.8e-22 Score=197.63 Aligned_cols=232 Identities=16% Similarity=0.171 Sum_probs=181.8
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CeeEEEEeCC-CCCeEEEEEccCCCEEEEEeC--CCcEEEE--e
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPR-LQKFSALKGH-TERATDVTFSPVSNHVATSSA--DRTARLW--N 356 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~-~~~~~~l~~h-~~~V~~l~~sp~~~~l~s~s~--dg~I~iw--d 356 (579)
..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++++|++++. ++.+.|| +
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 34688999999999999999987 88999999998 7777666665 468899999999999999983 3445555 5
Q ss_pred CCCCeeEEEecccCCeEEEEEecCCCEEE-EEeCCCeEEEEECCC-CcEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCC
Q 008050 357 TDGSLLNTFQGHLDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDT-GVELLLQEGHSRSVYGIAFHPDGSLAASCG-LDA 433 (579)
Q Consensus 357 ~~~~~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~-~~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg 433 (579)
..+.....+..+. .+..++|+|++++|+ +++.++.+.+|++.. +.....+..+...+.+++|+|+|++|++++ .++
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 117 STGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp TTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 5555555555444 488999999999877 778899999998632 233345556778899999999999877666 589
Q ss_pred eEEEEeCC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCce--eEEEeCCCCCeE
Q 008050 434 LARVWDLR-TGRSILALEGHVKPVLGISFSPNGYHLATGGED-----------NTCRIWDLRKRKS--LYVIPAHSNLIS 499 (579)
Q Consensus 434 ~I~iwd~~-~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D-----------g~I~iwDl~~~~~--~~~~~~~~~~V~ 499 (579)
.+.+|++. .+..+..+..+...+.+++|+|+|++|++++.+ +.|++||+.+++. +..+..|...+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 99999886 556677777788889999999999999988865 5699999988765 444447788899
Q ss_pred EEEEeeCCCeEEEEEECC
Q 008050 500 QVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~d 517 (579)
.+.|+|+ +.+|++++.+
T Consensus 276 ~~~~spd-g~~l~~~~~~ 292 (297)
T 2ojh_A 276 SPNWSPD-GDEFAYVRYF 292 (297)
T ss_dssp SCCBCTT-SSEEEEEEEC
T ss_pred cceECCC-CCEEEEEEec
Confidence 9999997 5555555443
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3e-21 Score=196.10 Aligned_cols=244 Identities=11% Similarity=0.061 Sum_probs=182.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCee-EEEEeCCCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSL-SGVVKIWSMPRLQK-FSALKGHTERATDVTFSPVSNHVATSSADR---TARLWNTDG 359 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~-dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg---~I~iwd~~~ 359 (579)
+...+ +++|+|+|++|++++. ++.|.+||..+++. ...+..+.....+++|+|++++|+++..++ .|.+||...
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 44556 9999999997776665 89999999999887 777777777766699999999999555553 899999765
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEE-eCCCe-EEEEECCCCcEEE----EEecCCCCeEEEEEcCCCCEEEE-EeCC
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTT-SFDKT-WRLWDVDTGVELL----LQEGHSRSVYGIAFHPDGSLAAS-CGLD 432 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~dg~-I~lwd~~~~~~~~----~~~~~~~~V~~l~~spdg~~l~s-g~~d 432 (579)
..............+++|+|+|++|+++ ..++. |.+|++.....+. ..........+++|+|+|+++++ +..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 118 NKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp TEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred CCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence 4443333344567899999999866655 45578 9999987643321 12234456899999999996554 4568
Q ss_pred CeEEEEeCCCCeE---EEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eEEEeCC----CC---CeE
Q 008050 433 ALARVWDLRTGRS---ILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKS--LYVIPAH----SN---LIS 499 (579)
Q Consensus 433 g~I~iwd~~~~~~---~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~--~~~~~~~----~~---~V~ 499 (579)
+.|.+||+.+++. +..+..+ ..+..++|+|+|++|++++ .++.|.+||+.+++. +..+..+ .. ...
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred CeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 9999999999887 7777644 5578999999999877665 578899999998876 4444332 21 235
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCCCeE
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 530 (579)
.++|+|++..+++++..++.|.+||+.....
T Consensus 277 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 277 QMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 5899998555556666678999999976543
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2.1e-21 Score=206.29 Aligned_cols=283 Identities=11% Similarity=0.063 Sum_probs=199.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC----------eeEE-----EEeCCCCCeEEEEEccCCCEEE----E
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRL----------QKFS-----ALKGHTERATDVTFSPVSNHVA----T 345 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~----------~~~~-----~l~~h~~~V~~l~~sp~~~~l~----s 345 (579)
....++.+++++++.++++++.+| ++||+.... ..+. ....|...|.+++|++++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999888 888875311 0111 1123567899999999999999 7
Q ss_pred EeCCCcEEEEeCCCC------------eeEEEecccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Q 008050 346 SSADRTARLWNTDGS------------LLNTFQGHLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR 412 (579)
Q Consensus 346 ~s~dg~I~iwd~~~~------------~~~~~~~h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 412 (579)
|+.|+.|+|||+... ....+.+|...|.+++|+|+ +.+|++++.||+|++||++++.......+|..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999995321 13455679999999999998 78999999999999999999877766778889
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-------CCeEEEEEcCCCCEEEEEe-CCC------cEE
Q 008050 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV-------KPVLGISFSPNGYHLATGG-EDN------TCR 478 (579)
Q Consensus 413 ~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-------~~I~si~~sp~g~~l~tgs-~Dg------~I~ 478 (579)
.|++++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.+++|++++.++++.+ .|| .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 99999999999999999999999999998 66666554432 3799999999887775533 443 389
Q ss_pred EEECCCCc----ee-EEEe-------CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC----CeEEEE---------
Q 008050 479 IWDLRKRK----SL-YVIP-------AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD----FKLVKS--------- 533 (579)
Q Consensus 479 iwDl~~~~----~~-~~~~-------~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~----~~~~~~--------- 533 (579)
+||+++.. .. ..+. .....-..+.+.++.+.++++.+..+.|.++.... ++....
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP 352 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELP 352 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCC
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccccccccc
Confidence 99998652 11 1111 11122223344465455555555566677776432 111110
Q ss_pred e--cCCCCcEEEEEEcC---------------CCCEEEEEEcCCeEEEEEcCC
Q 008050 534 L--SGHEAKVTSLDIHP---------------DEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 534 l--~~h~~~V~~l~~s~---------------dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
+ .........+++.- -...|++-+.||.|..|.+-+
T Consensus 353 ~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 353 VTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp BCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 0 01222334444421 124688888999999998755
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=8.7e-22 Score=222.20 Aligned_cols=268 Identities=10% Similarity=0.033 Sum_probs=193.6
Q ss_pred CeeEEEEcCCCCEEEEEecC---------CeEEEEeCCCCeeEEEEe---CCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 008050 288 PLSGCSYSHDGNLLATSSLS---------GVVKIWSMPRLQKFSALK---GHTERATDVTFSPVSNHVATSSADRTARLW 355 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~d---------g~I~iwd~~~~~~~~~l~---~h~~~V~~l~~sp~~~~l~s~s~dg~I~iw 355 (579)
.|.+++|||||++|++++.+ +.+++||+.+++. ..+. +|...+.+++|+|+|++|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 49999999999999999764 7899999998876 3333 34556899999999999999886 799999
Q ss_pred eCCCCeeE-EEecccCC------------------eEEEEEecCCCEEEEEeCCC-------------------------
Q 008050 356 NTDGSLLN-TFQGHLDR------------------LARMAFHPSGKYLGTTSFDK------------------------- 391 (579)
Q Consensus 356 d~~~~~~~-~~~~h~~~------------------I~~l~~sp~~~~l~s~s~dg------------------------- 391 (579)
+..+.... ....+... +.++.|+|+|++|++++.++
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 97654333 33333332 37899999999999987653
Q ss_pred ---------eEEEEECCCCcEEEEEecC------CCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeEEEEEecC
Q 008050 392 ---------TWRLWDVDTGVELLLQEGH------SRSVYGIAFHPDGSLAASCGL----DALARVWDLRTGRSILALEGH 452 (579)
Q Consensus 392 ---------~I~lwd~~~~~~~~~~~~~------~~~V~~l~~spdg~~l~sg~~----dg~I~iwd~~~~~~~~~~~~~ 452 (579)
.|++||+.+++....+..+ ...+.+++|+|||+++++... +..|++||+.+++....+..+
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 7999999988754444433 567899999999998877653 357999999999877665443
Q ss_pred -CCCe----EEEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCc--eeEEEeCCCCCeEE-EEEeeCCCeEEEEEE
Q 008050 453 -VKPV----LGISFSPNGYHLAT--GGEDN------TCRIWD-LRKRK--SLYVIPAHSNLISQ-VKFEPQEGYFLVTGS 515 (579)
Q Consensus 453 -~~~I----~si~~sp~g~~l~t--gs~Dg------~I~iwD-l~~~~--~~~~~~~~~~~V~~-v~~sp~~~~~l~sgs 515 (579)
...+ .+++|+|+|++|+. +..++ .|++|| ...+. +...+..+...+.. +.|+|++..+++++.
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~ 379 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEc
Confidence 3333 37899999997775 44666 577788 34443 14444443344544 699998544444544
Q ss_pred CC--CEEEEEECCCC--eEEEEecC---CCCcEEEEEEcCCCCEEEEEE
Q 008050 516 YD--MTVKVWSGRDF--KLVKSLSG---HEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 516 ~d--g~I~iwd~~~~--~~~~~l~~---h~~~V~~l~~s~dg~~L~s~s 557 (579)
.+ +.+++|++... .....+.. |...+..++|+|||++|+...
T Consensus 380 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 380 EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 44 78999987542 23334443 566789999999999887654
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=4.6e-20 Score=190.21 Aligned_cols=267 Identities=10% Similarity=0.076 Sum_probs=186.2
Q ss_pred CCEEEEEe----cCCeEEEEeC--CCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCC--Cee---
Q 008050 298 GNLLATSS----LSGVVKIWSM--PRLQKFSALKGHTERATDVTFSPVSNHVATSSAD----RTARLWNTDG--SLL--- 362 (579)
Q Consensus 298 g~~latgs----~dg~I~iwd~--~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d----g~I~iwd~~~--~~~--- 362 (579)
..++++|+ .++.|++|.+ .+++.......+......++|+|++++|++++.+ +.|.+|+++. ..+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34566664 3568899876 4454433222267788899999999999999886 7999998543 222
Q ss_pred EEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEE------EEec--------CCCCeEEEEEcCCCCEEE
Q 008050 363 NTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELL------LQEG--------HSRSVYGIAFHPDGSLAA 427 (579)
Q Consensus 363 ~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~------~~~~--------~~~~V~~l~~spdg~~l~ 427 (579)
.....+......+++ ++++|++++ .++.|.+|++.....+. ...+ +...+.+++|+|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333345556777787 788887776 57899999997543221 1111 122458899999999666
Q ss_pred EEe-CCCeEEEEeCCCCeE------E-------EEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eEE
Q 008050 428 SCG-LDALARVWDLRTGRS------I-------LALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKS--LYV 490 (579)
Q Consensus 428 sg~-~dg~I~iwd~~~~~~------~-------~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~--~~~ 490 (579)
+++ .++.|.+|++..... + .....+...+..++|+|+|++|++++ .++.|.+||+.++.. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 555 589999998875431 1 11223445688999999999888877 689999999987654 333
Q ss_pred Ee---CCCCCeEEEEEeeCCCeEEEE-EEC-CCEEEEEECC--CCe--EEEEecCCCCcEEEEEEcCCCCEEEEEE-cCC
Q 008050 491 IP---AHSNLISQVKFEPQEGYFLVT-GSY-DMTVKVWSGR--DFK--LVKSLSGHEAKVTSLDIHPDEQSIATVS-HDR 560 (579)
Q Consensus 491 ~~---~~~~~V~~v~~sp~~~~~l~s-gs~-dg~I~iwd~~--~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg 560 (579)
+. .+......++|+|+ +++|++ ... ++.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++
T Consensus 251 ~~~~~~~~~~~~~i~~spd-g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPD-GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EESCSSCCCCEEEEEECTT-SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EecCCCCCCCcccEEECCC-CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 32 23345789999998 555544 444 5899999985 344 4555554 55688999999999998887 678
Q ss_pred eEEEEEcC
Q 008050 561 WIKLWSTR 568 (579)
Q Consensus 561 ~I~iW~~~ 568 (579)
.|.+|++.
T Consensus 329 ~v~v~~~d 336 (361)
T 3scy_A 329 VIQIFERD 336 (361)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEE
Confidence 99997665
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=225.73 Aligned_cols=272 Identities=10% Similarity=0.095 Sum_probs=204.3
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC---CeEEEEEccCCCEEEEEeC---------CCcEEEEeCC
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTE---RATDVTFSPVSNHVATSSA---------DRTARLWNTD 358 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~s~s~---------dg~I~iwd~~ 358 (579)
+++|+|+|++++++ .||.|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999766554 699999999999988777765543 4899999999999998876 7899999987
Q ss_pred CCee---EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCe-----------------EEE
Q 008050 359 GSLL---NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSV-----------------YGI 417 (579)
Q Consensus 359 ~~~~---~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V-----------------~~l 417 (579)
+... ..+ ...+..++|+|+|++|+++. ++.|++||+.++...... .++...+ .++
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 7655 333 35688999999999999885 789999999888765433 2332222 489
Q ss_pred EEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCeEE--EE------EecCCCC
Q 008050 418 AFHPDGSLAASCGLDA----------------------------------LARVWDLRTGRSI--LA------LEGHVKP 455 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg----------------------------------~I~iwd~~~~~~~--~~------~~~~~~~ 455 (579)
+|+|||+.|++++.|. .|++||+.+++.. .. +.+|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999887652 7889999987642 11 2357777
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceeEEE----eCCCCCeE-----EEEEeeCCCeEEE-EEECC
Q 008050 456 VLGISFSPNGYHLATGGED----NTCRIWD----LRKRKSLYVI----PAHSNLIS-----QVKFEPQEGYFLV-TGSYD 517 (579)
Q Consensus 456 I~si~~sp~g~~l~tgs~D----g~I~iwD----l~~~~~~~~~----~~~~~~V~-----~v~~sp~~~~~l~-sgs~d 517 (579)
+.+++|+||++++++.... ..|.+|| +.++++...+ ..|...+. .+.|+|++..+++ ++..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999998877775433 2488999 8777665544 35666666 7899998555444 34455
Q ss_pred C--EEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcC-----CeEEEEEcCC
Q 008050 518 M--TVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHD-----RWIKLWSTRN 569 (579)
Q Consensus 518 g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~I~iW~~~~ 569 (579)
| .|++||+.+++ ...+..+...+..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 5 57777877666 45666666678888888 88888777765 8899998764
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=2.7e-21 Score=205.43 Aligned_cols=251 Identities=16% Similarity=0.143 Sum_probs=183.5
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-----------CeeE-----EEecccCC
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-----------SLLN-----TFQGHLDR 371 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-----------~~~~-----~~~~h~~~ 371 (579)
+.+++|+.... .+...++.+++++++.++++++.+| +++|+... .... ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46777764311 2345689999999999999999988 88887311 0111 11235667
Q ss_pred eEEEEEecCCCEEE----EEeCCCeEEEEECCCC--------c---EEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 008050 372 LARMAFHPSGKYLG----TTSFDKTWRLWDVDTG--------V---ELLLQEGHSRSVYGIAFHPD-GSLAASCGLDALA 435 (579)
Q Consensus 372 I~~l~~sp~~~~l~----s~s~dg~I~lwd~~~~--------~---~~~~~~~~~~~V~~l~~spd-g~~l~sg~~dg~I 435 (579)
|.+++|+++|++|+ +++.|++|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 7888999999998654 1 24455678999999999997 7899999999999
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-------CCeEEEEEeeCCC
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-------NLISQVKFEPQEG 508 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-------~~V~~v~~sp~~~ 508 (579)
++||++++..+....+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.++.|+++ +
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~-~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT-Y 252 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET-T
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC-c
Confidence 999999998877777889999999999999999999999999999998 66666665442 27899999996 5
Q ss_pred eEEEE-EECCC------EEEEEECCCCe-----EEEEec-------CCCCcEEEEEEcCCCCEEEEEE-cCCeEEEEEcC
Q 008050 509 YFLVT-GSYDM------TVKVWSGRDFK-----LVKSLS-------GHEAKVTSLDIHPDEQSIATVS-HDRWIKLWSTR 568 (579)
Q Consensus 509 ~~l~s-gs~dg------~I~iwd~~~~~-----~~~~l~-------~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~ 568 (579)
.++++ ++.+| .+++|++...+ ....+. +...+-..+.+-++.+++++++ ..+.|.|+...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 55543 44453 38999987541 222221 1122223334446767766555 44556666643
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.8e-20 Score=189.89 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=189.3
Q ss_pred CeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCeeEEEEeCC-----CCCeEEEEEccCCCEEEEEe------------CC
Q 008050 288 PLSGCSYSHDGNLLA-TSSLSGVVKIWSMPRLQKFSALKGH-----TERATDVTFSPVSNHVATSS------------AD 349 (579)
Q Consensus 288 ~I~~~~~spdg~~la-tgs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~l~~sp~~~~l~s~s------------~d 349 (579)
.+.+++|+|+|++++ ++..++.|.+||+.+++.+..+... ...+.+++|+|++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 478899999998665 5556789999999999888777632 12678899999999998886 57
Q ss_pred CcEEEEeCCCCee-EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 350 RTARLWNTDGSLL-NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 350 g~I~iwd~~~~~~-~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
+.|.+||..+... ..+. ....+.+++|+|++++|+++ ++.|++||+.+++....+..+.. ...+.|+|++..++.
T Consensus 115 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEe-CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 9999999766443 3443 35567889999999988888 68999999999988766654331 112378898886655
Q ss_pred EeCC-C-----------------------eEEEEeCCCCeEE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 008050 429 CGLD-A-----------------------LARVWDLRTGRSI-LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 429 g~~d-g-----------------------~I~iwd~~~~~~~-~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~ 483 (579)
++.. + .|.+||+.+++.. ..+..+...+.+++|+|+|++|+++ ++.|.+||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 4432 2 4789999998764 3344566678899999999999988 6899999999
Q ss_pred CCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC
Q 008050 484 KRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537 (579)
Q Consensus 484 ~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 537 (579)
+++.+..+..+ ..+.+++|+++ +.+|++++.++.|++||+.+++.+..+..+
T Consensus 269 ~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 269 KNASIKRVPLP-HSYYSVNVSTD-GSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTEEEEEEECS-SCCCEEEECTT-SCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCcCcceecCC-CceeeEEECCC-CCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99888887754 45788999997 566777788999999999999988887654
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=7e-20 Score=187.62 Aligned_cols=245 Identities=14% Similarity=0.138 Sum_probs=176.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCCe--eEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSL---SGVVKIWSMPRLQ--KFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTD 358 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~---dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~ 358 (579)
+......++|+|+|+ |++++. ++.|++|++.++. .+..+..+...+..++|+|++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 456778899999999 555544 6899999997665 4445556778899999999999998888 67999999964
Q ss_pred -C-C--eeEEEec---------ccCCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCcEEEE--Eec-CCCCeEEEEEcC
Q 008050 359 -G-S--LLNTFQG---------HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD-TGVELLL--QEG-HSRSVYGIAFHP 421 (579)
Q Consensus 359 -~-~--~~~~~~~---------h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~-~~~~~~~--~~~-~~~~V~~l~~sp 421 (579)
. . .+..+.. +...+.+++|+|+|+++++...++.|.+|++. ++..... ... ....+..++|+|
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 2 2 2222221 12247889999999966666668899999998 4543322 122 234678899999
Q ss_pred CCCEEEE-EeCCCeEEEEeCCC--CeE--EEEEecCC------CCeEEEEEcCCCCEEE-EEeCCCcEEEEECCC---Cc
Q 008050 422 DGSLAAS-CGLDALARVWDLRT--GRS--ILALEGHV------KPVLGISFSPNGYHLA-TGGEDNTCRIWDLRK---RK 486 (579)
Q Consensus 422 dg~~l~s-g~~dg~I~iwd~~~--~~~--~~~~~~~~------~~I~si~~sp~g~~l~-tgs~Dg~I~iwDl~~---~~ 486 (579)
||+++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+ ++..++.|.+||+.. .+
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996555 56788999999874 543 22333222 3488899999999875 455689999999973 35
Q ss_pred eeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEE--ECCCCeEE
Q 008050 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVW--SGRDFKLV 531 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iw--d~~~~~~~ 531 (579)
.+..+..+...+..++|+|+ +.+|++++ .++.|.+| |..++++.
T Consensus 277 ~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDPT-EAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECSSSCCCEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeEEEecCCCCcCeEEECCC-CCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 56666666667889999997 55555555 46999999 55566654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=3.2e-20 Score=192.76 Aligned_cols=275 Identities=13% Similarity=0.054 Sum_probs=194.0
Q ss_pred EEEcCCCCEEEEEec-CC--eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCe-eEEEec
Q 008050 292 CSYSHDGNLLATSSL-SG--VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSL-LNTFQG 367 (579)
Q Consensus 292 ~~~spdg~~latgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~ 367 (579)
.+|||||++|++++. +| .|.+||+.+++......++...+..+.|+|+++.|+.++.++.|++||+.+.. ...+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999887 66 48889999988877666676666678899999999999999999999976543 334444
Q ss_pred ccCCeEEEE--EecCCCEEEEE----------------------eCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC-C
Q 008050 368 HLDRLARMA--FHPSGKYLGTT----------------------SFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP-D 422 (579)
Q Consensus 368 h~~~I~~l~--~sp~~~~l~s~----------------------s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp-d 422 (579)
+...+.... +++++.+++.. ..++.|++||+.+++..... .+...+..+.|+| |
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYD 199 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCC
Confidence 444443333 48899888743 24478999999998765544 4566789999999 9
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCeEEEEEecCC--CCeEEEEEcCCCCEEEEEeC-CC----cEEEEECCCCceeE
Q 008050 423 GSLAASCGLD------ALARVWDLRTGRSILALEGHV--KPVLGISFSPNGYHLATGGE-DN----TCRIWDLRKRKSLY 489 (579)
Q Consensus 423 g~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~~--~~I~si~~sp~g~~l~tgs~-Dg----~I~iwDl~~~~~~~ 489 (579)
|+.|+.+..+ ..|.++|+..+... .+..+. ..+..+.|+|+|+.|+..+. ++ .|++||+.+++...
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence 9988877653 37888888765443 333333 24778999999997765543 22 39999999887433
Q ss_pred --EEeCCCCC---eEEEEEeeCCCeEEEEE--------ECCCEEEEEECCCCeEEEEecCCCC-----------cEEEEE
Q 008050 490 --VIPAHSNL---ISQVKFEPQEGYFLVTG--------SYDMTVKVWSGRDFKLVKSLSGHEA-----------KVTSLD 545 (579)
Q Consensus 490 --~~~~~~~~---V~~v~~sp~~~~~l~sg--------s~dg~I~iwd~~~~~~~~~l~~h~~-----------~V~~l~ 545 (579)
.+..+... ...+.|+|++..++++. ..+..|++||+.+++.. .+..|.. .+.+++
T Consensus 279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 357 (388)
T 3pe7_A 279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPS 357 (388)
T ss_dssp EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCE
T ss_pred EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCcc
Confidence 33221000 11236899855444432 45678999999887753 4544554 578899
Q ss_pred EcCCCCEEEEEE-cCCeEEEEEcCC
Q 008050 546 IHPDEQSIATVS-HDRWIKLWSTRN 569 (579)
Q Consensus 546 ~s~dg~~L~s~s-~Dg~I~iW~~~~ 569 (579)
|+|||++|+.++ .+|...||.+.-
T Consensus 358 ~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 358 FTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred CCCCCCEEEEEecCCCceeEEEEEC
Confidence 999999887666 567777776543
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=3.1e-19 Score=183.91 Aligned_cols=259 Identities=13% Similarity=0.159 Sum_probs=184.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCC--Ce--eEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLS----GVVKIWSMPR--LQ--KFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLW 355 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~d----g~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iw 355 (579)
+......++|+|+|++|++++.+ |.|.+|++.. ++ .+..+..+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56778889999999999999875 8999998865 43 33444446667888888 788877776 57899999
Q ss_pred eCCC-CeeE---EE---ec--------ccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCcE-------------EEE
Q 008050 356 NTDG-SLLN---TF---QG--------HLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTGVE-------------LLL 406 (579)
Q Consensus 356 d~~~-~~~~---~~---~~--------h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~~~-------------~~~ 406 (579)
++.. ..+. .. .+ +...+.+++|+|+|++|++++. ++.|.+|++..... ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9653 2111 11 11 1223578999999997766664 78999998875431 122
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCeE--EEEEe---cCCCCeEEEEEcCCCCEEEEEeCC--CcEE
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDLRTGRS--ILALE---GHVKPVLGISFSPNGYHLATGGED--NTCR 478 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~~~--~~~~~---~~~~~I~si~~sp~g~~l~tgs~D--g~I~ 478 (579)
...+.....+++|+|||+++++++ .++.|.+||+.+++. +..+. .+......++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 234456788999999999887777 689999999987754 23332 233457899999999999777654 8999
Q ss_pred EEECC--CCc--eeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEE--ECCCCeEEEEe-cCCCCcEEEEEEc
Q 008050 479 IWDLR--KRK--SLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVW--SGRDFKLVKSL-SGHEAKVTSLDIH 547 (579)
Q Consensus 479 iwDl~--~~~--~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iw--d~~~~~~~~~l-~~h~~~V~~l~~s 547 (579)
+|++. +++ .+..+.. ...+..++|+|+ +.+|++++ .++.|.+| |..++++.... ..+...++|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPN-GKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTT-SCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCC-CCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99986 344 4445554 456788999997 55555555 68999996 45567665443 2244568888886
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=3e-19 Score=184.89 Aligned_cols=269 Identities=12% Similarity=0.111 Sum_probs=185.9
Q ss_pred EEEEEecC--CeEEEEeC--CCCeeEE--EEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--CCeeEEEec-cc
Q 008050 300 LLATSSLS--GVVKIWSM--PRLQKFS--ALK-GHTERATDVTFSPVSNHVATSSADRTARLWNTD--GSLLNTFQG-HL 369 (579)
Q Consensus 300 ~latgs~d--g~I~iwd~--~~~~~~~--~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~--~~~~~~~~~-h~ 369 (579)
+|++|+.. +.|.+|++ .+++... ... .+...+..++|+|++++|++++.+ .|.+|+++ ++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45566653 56777765 4554322 221 244578899999999999998887 99999964 443322221 11
Q ss_pred CCeEEEEEecCCCE--EEEEe-------------CCCeEEEEECC-CCcEEEEEe----cCCCCeEEEEEcCCCCEEEEE
Q 008050 370 DRLARMAFHPSGKY--LGTTS-------------FDKTWRLWDVD-TGVELLLQE----GHSRSVYGIAFHPDGSLAASC 429 (579)
Q Consensus 370 ~~I~~l~~sp~~~~--l~s~s-------------~dg~I~lwd~~-~~~~~~~~~----~~~~~V~~l~~spdg~~l~sg 429 (579)
+.+.+++|+|+|++ +++++ .+|++.+|++. .++...... .+...+.+++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 33567899999994 44553 68999999997 455443322 245679999999999988877
Q ss_pred eC-CCeEEEEeCC-CCeEE--EEEe--cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECC--CCcee---EEEeC----
Q 008050 430 GL-DALARVWDLR-TGRSI--LALE--GHVKPVLGISFSPNGYHLATGGE-DNTCRIWDLR--KRKSL---YVIPA---- 493 (579)
Q Consensus 430 ~~-dg~I~iwd~~-~~~~~--~~~~--~~~~~I~si~~sp~g~~l~tgs~-Dg~I~iwDl~--~~~~~---~~~~~---- 493 (579)
+. ++.|.+||+. +++.. ..+. .|...+..++|+|+|++|++++. ++.|.+|++. +++.. ..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6899999998 67643 3333 23566899999999999988775 7899999865 45542 22221
Q ss_pred ---CCC------CeEEEE-EeeCCCeEEEEEEC-CC-----EEEEEECC-CCeEEE---EecCCCCcEEEEEEcC---CC
Q 008050 494 ---HSN------LISQVK-FEPQEGYFLVTGSY-DM-----TVKVWSGR-DFKLVK---SLSGHEAKVTSLDIHP---DE 550 (579)
Q Consensus 494 ---~~~------~V~~v~-~sp~~~~~l~sgs~-dg-----~I~iwd~~-~~~~~~---~l~~h~~~V~~l~~s~---dg 550 (579)
|.. .+..++ |+|+ +++|++++. ++ .|.+|++. ++++.. .+..+...+..++|+| ||
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spd-G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cCCcccccccccccccEEEECCC-CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 121 478899 9998 555555443 33 89999986 566543 2333455567889999 89
Q ss_pred CEEEEEEcC-CeEEEEEcCCC
Q 008050 551 QSIATVSHD-RWIKLWSTRNK 570 (579)
Q Consensus 551 ~~L~s~s~D-g~I~iW~~~~~ 570 (579)
++|++++.+ +.|.+|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998864 89999998754
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=3.8e-20 Score=203.78 Aligned_cols=231 Identities=11% Similarity=0.028 Sum_probs=181.0
Q ss_pred CCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCeeEEEeccc-CCeEEEEEecCCCEEEEEeC---CCeEEEEECCC--
Q 008050 328 TERATDVTFSPVSNHVATSSA-DRTARLWNTDGSLLNTFQGHL-DRLARMAFHPSGKYLGTTSF---DKTWRLWDVDT-- 400 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~h~-~~I~~l~~sp~~~~l~s~s~---dg~I~lwd~~~-- 400 (579)
..+|.+++|+|||++|++++. ||++.||++++.....+..+. ..+..+.|+|+ +.+++++. +..+.+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999998887777777776 58999999999 77777765 45556655432
Q ss_pred -CcEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----
Q 008050 401 -GVELLLQEGHSRSVYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---- 474 (579)
Q Consensus 401 -~~~~~~~~~~~~~V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---- 474 (579)
+... ... ....+...+|+++|+ .+++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 222 222345668888875 33444445555699999987665554433 789999999999988876
Q ss_pred CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCC--EEEEEECCCCeEEEEecCCCCcEEEEE-------
Q 008050 475 NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDM--TVKVWSGRDFKLVKSLSGHEAKVTSLD------- 545 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~------- 545 (579)
+.|++||+.+++.. .+..|...+..++|+|+ |.+|+++..+| .|++||+.+++.. .+.+|...+.++.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPG-MKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTT-SCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCC-CCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 78999999887754 66778888999999997 67777888888 8999999998887 7778887777777
Q ss_pred -EcCCCCEEEEEEcCCeEEEEEc
Q 008050 546 -IHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 546 -~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
|+|||.++++++.||.+++|++
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999988999999999999998
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=212.45 Aligned_cols=281 Identities=11% Similarity=0.047 Sum_probs=199.8
Q ss_pred CeeEEEEcCCCCEEEEEec---------CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 288 PLSGCSYSHDGNLLATSSL---------SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~---------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
.+.+++|||||++|++++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. ++.|++|+..
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4889999999999999876 789999999988762111 1135689999999999999886 7899999976
Q ss_pred CCeeEEEe--cccCC-----------------eEEEEEecCCCEEEEEeCCC----------------------------
Q 008050 359 GSLLNTFQ--GHLDR-----------------LARMAFHPSGKYLGTTSFDK---------------------------- 391 (579)
Q Consensus 359 ~~~~~~~~--~h~~~-----------------I~~l~~sp~~~~l~s~s~dg---------------------------- 391 (579)
+.....+. ++... ..+++|+|||++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 54433332 22221 24899999999999988652
Q ss_pred ------eEEEEECCCCcEE---EE-----EecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEe----CCCCeEEEEE
Q 008050 392 ------TWRLWDVDTGVEL---LL-----QEGHSRSVYGIAFHPDGSLAASCGLD----ALARVWD----LRTGRSILAL 449 (579)
Q Consensus 392 ------~I~lwd~~~~~~~---~~-----~~~~~~~V~~l~~spdg~~l~sg~~d----g~I~iwd----~~~~~~~~~~ 449 (579)
.|++||+.+++.. .. +.+|...+.+++|+||++++++.... ..|.+|| +.+++....+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7899999987642 21 22577789999999998777764432 3588899 8777655444
Q ss_pred ----ecCCCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC
Q 008050 450 ----EGHVKPVL-----GISFSPNGYHLAT--GGEDN--TCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 450 ----~~~~~~I~-----si~~sp~g~~l~t--gs~Dg--~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
..|...+. .+.|+|+|+.|+. +..+| .|.+||+.+++ ...+..+...+..+.+. +++.+++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 45666666 7899999986554 44555 57778887666 45555556667777777 65665555544
Q ss_pred ----CCEEEEEECCC--Ce-EEEEec----CCCCcEEEEEEcCCCCEEEEE-EcC--CeEEEEEcCCCCc
Q 008050 517 ----DMTVKVWSGRD--FK-LVKSLS----GHEAKVTSLDIHPDEQSIATV-SHD--RWIKLWSTRNKGD 572 (579)
Q Consensus 517 ----dg~I~iwd~~~--~~-~~~~l~----~h~~~V~~l~~s~dg~~L~s~-s~D--g~I~iW~~~~~~~ 572 (579)
++.+++|.+.. +. ....+. +|...+..+.|++++++|+.. +.+ ..+.+|++.+++.
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 47888887643 42 123333 266678899999999887654 333 4788999877654
No 162
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=4.5e-19 Score=198.07 Aligned_cols=286 Identities=10% Similarity=0.027 Sum_probs=206.5
Q ss_pred cCCCCCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCCCeeEEEEeCCCCCeE---------EEEEc--cCCCE-EEEEeC
Q 008050 283 SGDDRPLSGCSYSHDGNLLATS--SLSGVVKIWSMPRLQKFSALKGHTERAT---------DVTFS--PVSNH-VATSSA 348 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latg--s~dg~I~iwd~~~~~~~~~l~~h~~~V~---------~l~~s--p~~~~-l~s~s~ 348 (579)
.+|...+..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ |||+. |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 4578899999999876666666 5588999999765666677777777766 66676 99998 776654
Q ss_pred -CCcEEEEeCC--C-CeeEEEec-----ccCCeEEEEEecCCCEEEEEeCC----------CeEEEEECCC------CcE
Q 008050 349 -DRTARLWNTD--G-SLLNTFQG-----HLDRLARMAFHPSGKYLGTTSFD----------KTWRLWDVDT------GVE 403 (579)
Q Consensus 349 -dg~I~iwd~~--~-~~~~~~~~-----h~~~I~~l~~sp~~~~l~s~s~d----------g~I~lwd~~~------~~~ 403 (579)
+..|.+|+.+ + .....+.. |...+..++|+|+|+.|++++.+ ..|++||+.+ +..
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 5678888876 4 55556665 66788999999999999998877 5899999988 554
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CC---eEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 008050 404 LLLQEGHSRSVYGIAFHPDGSLAASCGLD--------ALARVWDLR-TG---RSILALEGHVKPVLGISFSPNGYHLATG 471 (579)
Q Consensus 404 ~~~~~~~~~~V~~l~~spdg~~l~sg~~d--------g~I~iwd~~-~~---~~~~~~~~~~~~I~si~~sp~g~~l~tg 471 (579)
......+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+.|+|||++++++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 43331445677889999999999887754 379999999 57 4444445567889999999999988888
Q ss_pred eCCC--cEEEEECCCCceeEEEeCCCCC--------eEEEEEeeCCCeEEEEEECCCEEEEE--ECCCCeEEEEecCCCC
Q 008050 472 GEDN--TCRIWDLRKRKSLYVIPAHSNL--------ISQVKFEPQEGYFLVTGSYDMTVKVW--SGRDFKLVKSLSGHEA 539 (579)
Q Consensus 472 s~Dg--~I~iwDl~~~~~~~~~~~~~~~--------V~~v~~sp~~~~~l~sgs~dg~I~iw--d~~~~~~~~~l~~h~~ 539 (579)
+.++ .|.+||+.+++.......+... +..+.|+++ +.++++++. +.++|| |..+++ +..+..|..
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~ 336 (662)
T 3azo_A 260 DRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN-GLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWT 336 (662)
T ss_dssp CTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT-SCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCC
T ss_pred CCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC-CEEEEEEEc-CccEEEEEECCCCc-EEEecCCCC
Confidence 8888 6777777666554333332222 456888885 778888888 888888 666665 677888887
Q ss_pred cEEEE-EEcCCCCEEEEEEcCC--eEEEEEcCCCC
Q 008050 540 KVTSL-DIHPDEQSIATVSHDR--WIKLWSTRNKG 571 (579)
Q Consensus 540 ~V~~l-~~s~dg~~L~s~s~Dg--~I~iW~~~~~~ 571 (579)
.+..+ +++.+.-++++++.+. .|.+|++.+++
T Consensus 337 ~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 337 EWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 78777 5543333344445554 45555655554
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.3e-19 Score=188.22 Aligned_cols=275 Identities=11% Similarity=0.021 Sum_probs=187.9
Q ss_pred CeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 008050 288 PLSGCSYSHDGNLLATSSLS---GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~ 364 (579)
.+.+++|||||++|+..... ..|.+||+.+++......++......+.|+|+|++|+.++.++.|++|+..+.....
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 37788999999998877543 478899998887654433333233348899999999999999999999976654433
Q ss_pred E-ecccCCeEE-------------------EEEecCCCEEEEE-----eCCCeEEEEECCCCcEEEEEecCCCCeEEEEE
Q 008050 365 F-QGHLDRLAR-------------------MAFHPSGKYLGTT-----SFDKTWRLWDVDTGVELLLQEGHSRSVYGIAF 419 (579)
Q Consensus 365 ~-~~h~~~I~~-------------------l~~sp~~~~l~s~-----s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~ 419 (579)
+ ..+...... +.|+|+++.++.+ ..+..|++||+.+++..... .+...+..+.|
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~ 195 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY 195 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence 3 323332222 3456777766554 35678999999988766555 45677899999
Q ss_pred cC-CCCEEEEEeCC------CeEEEEeCCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 008050 420 HP-DGSLAASCGLD------ALARVWDLRTGRSILALEGH-VKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRK 486 (579)
Q Consensus 420 sp-dg~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~-~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~ 486 (579)
+| ++..|+..+.+ ..|.+||+..++........ ...+..+.|+|+|++|+.++.+ +.|++||+.+++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 99 78877666543 46889998766533322211 2347889999999988777643 449999998876
Q ss_pred eeEEEeCCCCCeEEEEEee-CCCeEEEEEE----------------CCCEEEEEECCCCeEEEEecCCCC----------
Q 008050 487 SLYVIPAHSNLISQVKFEP-QEGYFLVTGS----------------YDMTVKVWSGRDFKLVKSLSGHEA---------- 539 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp-~~~~~l~sgs----------------~dg~I~iwd~~~~~~~~~l~~h~~---------- 539 (579)
........ ... +.|++ + +.++++++ .++.|++||+.+++.. .+..+..
T Consensus 276 ~~~l~~~~--~~~-~~~s~~d-g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 276 NEEVMVMP--PCS-HLMSNFD-GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp EEEEEECC--SEE-EEEECSS-SSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSS
T ss_pred eEEeeeCC--CCC-CCccCCC-CceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccccccccc
Confidence 54433222 233 88999 7 45666544 3478999999887643 3433443
Q ss_pred -cEEEEEEcCCCCEEEEEEc-CCeEEEEEcC
Q 008050 540 -KVTSLDIHPDEQSIATVSH-DRWIKLWSTR 568 (579)
Q Consensus 540 -~V~~l~~s~dg~~L~s~s~-Dg~I~iW~~~ 568 (579)
.+..+.|+|+|++|+.++. ++...||.+.
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567889999999887764 5555555543
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=6.8e-19 Score=199.59 Aligned_cols=267 Identities=10% Similarity=0.063 Sum_probs=193.3
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC-----eEEEEEccCCCEEEEEeCC---------CcE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTER-----ATDVTFSPVSNHVATSSAD---------RTA 352 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~-----V~~l~~sp~~~~l~s~s~d---------g~I 352 (579)
....++.|++||++|+++ ||.|++||+.+++....+.+|... ...+.|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 999999999999988888877643 2448899999999998876 567
Q ss_pred EEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCe-----------------
Q 008050 353 RLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSV----------------- 414 (579)
Q Consensus 353 ~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V----------------- 414 (579)
.+||+.+.....+..+...+...+|+|||+.|+.+ .++.|++||+.++...... .++...+
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 79998888777788888899999999999999888 4789999999888765432 2332222
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCC---Ce--EEEEEe---
Q 008050 415 YGIAFHPDGSLAASCGLDA------------------------------------LARVWDLRT---GR--SILALE--- 450 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg------------------------------------~I~iwd~~~---~~--~~~~~~--- 450 (579)
..+.|+|||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 2489999999988875321 588899988 73 233343
Q ss_pred ---cCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----ee--EEE--eCCCCCeE-----EEEEeeCCCeE
Q 008050 451 ---GHVKPVLGISFSPNGYHLATGGE----DNTCRIWDLRKRK----SL--YVI--PAHSNLIS-----QVKFEPQEGYF 510 (579)
Q Consensus 451 ---~~~~~I~si~~sp~g~~l~tgs~----Dg~I~iwDl~~~~----~~--~~~--~~~~~~V~-----~v~~sp~~~~~ 510 (579)
+|...+..++|+|||+.++.... +..|++||+.+++ +. ..+ ..|...+. .+.|+|++..+
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 26677999999999997666543 3379999998887 22 222 44555544 68899985554
Q ss_pred EEEEE-CC--CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 511 LVTGS-YD--MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 511 l~sgs-~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
++..+ .+ ..|++||..+++.. .+......|..+.+ +|++.|+..+.
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred EEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 42454 33 46888898876654 44444555666542 34666655443
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=5.8e-18 Score=175.22 Aligned_cols=243 Identities=10% Similarity=0.095 Sum_probs=174.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCeeEEEEeC-CCCCeEEEEEccCCCE--EEEEe------------
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMP-RLQKFSALKG-HTERATDVTFSPVSNH--VATSS------------ 347 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~-~~~~~~~l~~-h~~~V~~l~~sp~~~~--l~s~s------------ 347 (579)
++...+..++|+|+|++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++ ++++.
T Consensus 37 ~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 37 PQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 344578899999999999999887 99999997 7766543321 1123667899999995 44543
Q ss_pred -CCCcEEEEeCC--CCeeEEEe----cccCCeEEEEEecCCCEEEEEeC-CCeEEEEECC-CCcEEE--EEe--cCCCCe
Q 008050 348 -ADRTARLWNTD--GSLLNTFQ----GHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVD-TGVELL--LQE--GHSRSV 414 (579)
Q Consensus 348 -~dg~I~iwd~~--~~~~~~~~----~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~-~~~~~~--~~~--~~~~~V 414 (579)
.+|.+.+|+++ ++....+. .+...+.+++|+|+|++|++++. ++.|++||+. +++... ... .+...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999964 44443333 24567899999999998887764 6899999998 676532 222 235679
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEeCC--CCeEEE---EEec-------CCC------CeEEEE-EcCCCCEEEEEeCC
Q 008050 415 YGIAFHPDGSLAASCGL-DALARVWDLR--TGRSIL---ALEG-------HVK------PVLGIS-FSPNGYHLATGGED 474 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~-dg~I~iwd~~--~~~~~~---~~~~-------~~~------~I~si~-~sp~g~~l~tgs~D 474 (579)
..++|+|||+++++++. ++.|.+|++. +++... .+.. |.. .+..++ |+|+|++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999998887765 7899999765 565432 2221 121 488999 99999998877643
Q ss_pred -C-----cEEEEECC-CCceeE---EEeCCCCCeEEEEEee---CCCeEEEEEEC-CCEEEEEECCCC
Q 008050 475 -N-----TCRIWDLR-KRKSLY---VIPAHSNLISQVKFEP---QEGYFLVTGSY-DMTVKVWSGRDF 528 (579)
Q Consensus 475 -g-----~I~iwDl~-~~~~~~---~~~~~~~~V~~v~~sp---~~~~~l~sgs~-dg~I~iwd~~~~ 528 (579)
+ .|.+|++. +++... .+..+......++|+| + +.+|++++. ++.|.+|++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d-g~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS-DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC-TTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC-CCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999996 555443 2333445567789999 5 566776665 599999998655
No 166
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=1.2e-17 Score=170.74 Aligned_cols=258 Identities=12% Similarity=0.126 Sum_probs=185.1
Q ss_pred CCeeEEEEcCCCCEEEEEe---------cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC---C--cE
Q 008050 287 RPLSGCSYSHDGNLLATSS---------LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD---R--TA 352 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs---------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d---g--~I 352 (579)
..+...+| ||++++... .++.|.+|++.+++... + ..+.++.|+|+|++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677778 888887653 36789999998876533 3 568899999999999887754 3 47
Q ss_pred EEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCC---------------------------CeEEEEECCCCcEEE
Q 008050 353 RLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD---------------------------KTWRLWDVDTGVELL 405 (579)
Q Consensus 353 ~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d---------------------------g~I~lwd~~~~~~~~ 405 (579)
.+|+..+.....+..+.. +..+.|+|+|+.|+.++.+ ..|++||+.+++.+.
T Consensus 88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 166 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE 166 (347)
T ss_dssp EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence 778877766555554445 9999999999998888743 579999999887633
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLDA-------LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED---- 474 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~dg-------~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D---- 474 (579)
.+.. . .+..+.|+||| +++++..++ ...||.+.+++. ..+..+ ..+.++ +|+|++|+.++.+
T Consensus 167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKY 239 (347)
T ss_dssp EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSC
T ss_pred eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCC
Confidence 3333 3 78899999999 877776542 334444335543 334334 555554 8999988887754
Q ss_pred ----CcEEEEECCCCceeEEEeCCCCCeEE-EEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCC
Q 008050 475 ----NTCRIWDLRKRKSLYVIPAHSNLISQ-VKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 475 ----g~I~iwDl~~~~~~~~~~~~~~~V~~-v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
..|.+|| +++.......+...+.. +.|+ + + ++++++.++.++|| +.+++....+ .+...|.+++|++
T Consensus 240 ~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~- 311 (347)
T 2gop_A 240 MSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE- 311 (347)
T ss_dssp CCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS-
T ss_pred ccccceEEEEC--CCceEeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC-
Confidence 3688888 55544444455667776 8898 6 5 88888999999999 8766654443 4577899999999
Q ss_pred CCEEEEEEcCCeE-EEEEcC
Q 008050 550 EQSIATVSHDRWI-KLWSTR 568 (579)
Q Consensus 550 g~~L~s~s~Dg~I-~iW~~~ 568 (579)
.++++++.++.. .||.+.
T Consensus 312 -~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 312 -IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -SEEEEEECSSSCCEEEEES
T ss_pred -cEEEEEcCCCChHHheEeC
Confidence 677777777665 777765
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=1.4e-17 Score=169.98 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=190.6
Q ss_pred CCCeeEEEEcCCCCEEEEEecC------------------------CeEEEEeCCCCeeEEEEe-CCCCCeEEEEEccCC
Q 008050 286 DRPLSGCSYSHDGNLLATSSLS------------------------GVVKIWSMPRLQKFSALK-GHTERATDVTFSPVS 340 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~d------------------------g~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp~~ 340 (579)
-..+.+++++++|+++++...+ +.|.+||..+++.+..+. ++-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888877 479999999888877665 455688999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC--eeEEE---------ecccCCeEEEEEec-CCCEEEEEe-CCCeEEEEECCCCcEEEEE
Q 008050 341 NHVATSSADRTARLWNTDGS--LLNTF---------QGHLDRLARMAFHP-SGKYLGTTS-FDKTWRLWDVDTGVELLLQ 407 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~~~~--~~~~~---------~~h~~~I~~l~~sp-~~~~l~s~s-~dg~I~lwd~~~~~~~~~~ 407 (579)
+++++...++.|++|+.++. .+..+ ..+......+++++ ++.++++.+ .++.|++|| ..+..+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 98888888999999998876 55555 24455789999999 787777776 689999999 456665555
Q ss_pred ecC----------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEE---
Q 008050 408 EGH----------SRSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATG--- 471 (579)
Q Consensus 408 ~~~----------~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tg--- 471 (579)
... .....+++++++ +.++++...++.|++||..+++.+..+. .+...+.+++|+| +..+.+.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 322 234889999998 7777888889999999999898888874 4556789999999 4333333
Q ss_pred ----eCCCcEEEEECCCCceeEEEe---CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 472 ----GEDNTCRIWDLRKRKSLYVIP---AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 472 ----s~Dg~I~iwDl~~~~~~~~~~---~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
..++.|++||+.+++.+..+. .+......++++++ +.++++...++.|++|++.
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d-G~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED-GTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT-SEEEEEESSSCCEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC-CCEEEEECCCCEEEEEeCC
Confidence 344589999999999998884 56677899999997 6888888889999999864
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=5.2e-17 Score=161.52 Aligned_cols=239 Identities=13% Similarity=0.205 Sum_probs=184.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec------ccCCeEEEEEe-cCCCEEEEEeC-CCeEEEEE
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG------HLDRLARMAFH-PSGKYLGTTSF-DKTWRLWD 397 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~------h~~~I~~l~~s-p~~~~l~s~s~-dg~I~lwd 397 (579)
++-....++++++++.++++.+.++.|.+|+.+++.+..+.. +...+..+++. +++.++++... ++.|.+||
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 455678999999999988888889999999988877766642 34578899995 56655555533 89999999
Q ss_pred CCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 398 VDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 398 ~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
.++..+..+. .+...+.+++++++|+++++...++.|.+||.. ++.+..+. .+...+.+|+++++|+++++.+.+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4566555543 344678999999999988888888999999964 56565554 344568999999999988877788
Q ss_pred CcEEEEECCCCceeEEEeCC--CCCeEEEEEeeCCCeEEEEEECCC-EEEEEECCCCeEEEEecCCC--CcEEEEEEcCC
Q 008050 475 NTCRIWDLRKRKSLYVIPAH--SNLISQVKFEPQEGYFLVTGSYDM-TVKVWSGRDFKLVKSLSGHE--AKVTSLDIHPD 549 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~~~~~--~~~V~~v~~sp~~~~~l~sgs~dg-~I~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d 549 (579)
+.|++||. .++.+..+..+ ...+..++++++ +.++++...++ .|.+||. +++.+..+..+. ..+.+++++++
T Consensus 185 ~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 185 HCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp TEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred CEEEEEcC-CCCEEEEEccCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 99999997 56666666543 357889999996 67777777775 9999995 566666665443 34789999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCC
Q 008050 550 EQSIATVSHDRWIKLWSTRNK 570 (579)
Q Consensus 550 g~~L~s~s~Dg~I~iW~~~~~ 570 (579)
|+++++ +.|+.|++|++...
T Consensus 262 g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 GSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TEEEEE-ETTTEEEEEECSCC
T ss_pred CcEEEE-CCCCeEEEEEcccc
Confidence 986666 67999999998654
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.81 E-value=2.7e-17 Score=167.21 Aligned_cols=275 Identities=10% Similarity=-0.006 Sum_probs=202.9
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ 366 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 366 (579)
..|.++.|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+|+.++.....+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 357788899998888877888899999 45666777778888999999999998888888999999997765554443
Q ss_pred -cccCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeC------CC
Q 008050 367 -GHLDRLARMAFHPSGKYLGTTSFD----KTWRLWDVDTGVELLLQE--GHSRSVYGIAFHPDGSLAASCGL------DA 433 (579)
Q Consensus 367 -~h~~~I~~l~~sp~~~~l~s~s~d----g~I~lwd~~~~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~------dg 433 (579)
.+...+.+++++++|+++++...+ +.|.+||..++....... .+...+.++.++++|+++++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 566789999999999877777666 689999998876653332 24457899999999988776653 35
Q ss_pred eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC-CceeEE--------EeCCCCCeEEEEE
Q 008050 434 LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLRK-RKSLYV--------IPAHSNLISQVKF 503 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~-~~~~~~--------~~~~~~~V~~v~~ 503 (579)
.|..||..+++..... .....+..++|+++|++|+++ +.++.|.+||+.+ +..+.. +..+ ..+..+++
T Consensus 163 ~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~ 240 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI 240 (333)
T ss_dssp EEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE
T ss_pred eEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE
Confidence 6777777655543322 233457899999999866554 4678999999964 332221 1112 46788999
Q ss_pred eeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCC------cEEEEEEcCCCCEEEEEEcCC------eEEEEEcC
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA------KVTSLDIHPDEQSIATVSHDR------WIKLWSTR 568 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~s~dg~~L~s~s~Dg------~I~iW~~~ 568 (579)
+++ +.++++...++.|.+||. +++.+..+..+.. .+.+++|+++++.|+.++.++ .|..+++.
T Consensus 241 d~~-G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 241 DSD-DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp BTT-CCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCC-CCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 986 677777777899999998 5666666654433 689999999988877666553 45555554
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=8.2e-17 Score=160.08 Aligned_cols=240 Identities=13% Similarity=0.186 Sum_probs=185.7
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe------CCCCCeEEEEEc-cCCCEEEEEeC-CCcEEE
Q 008050 283 SGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK------GHTERATDVTFS-PVSNHVATSSA-DRTARL 354 (579)
Q Consensus 283 ~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~s-p~~~~l~s~s~-dg~I~i 354 (579)
.++-....+++++++|+++++...++.|.+||.. ++.+..+. +|...+.++++. +++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556788999999999998888889999999977 56666553 244578999994 66666555533 899999
Q ss_pred EeCCCCeeEEEec-ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeC
Q 008050 355 WNTDGSLLNTFQG-HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 355 wd~~~~~~~~~~~-h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
|+.+++.+..+.. +...+..++++++|+++++...++.|.+||.. +..+..+. .+...+.+++++++|+++++...
T Consensus 105 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 105 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred ECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9988877766643 34678999999999987777788999999965 44444443 34457899999999998888888
Q ss_pred CCeEEEEeCCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEeCCC--CCeEEEEEeeC
Q 008050 432 DALARVWDLRTGRSILALEGH--VKPVLGISFSPNGYHLATGGEDN-TCRIWDLRKRKSLYVIPAHS--NLISQVKFEPQ 506 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~~~--~~~I~si~~sp~g~~l~tgs~Dg-~I~iwDl~~~~~~~~~~~~~--~~V~~v~~sp~ 506 (579)
++.|++||. .++.+..+..+ ...+.+|+++++|+++++...++ .|.+||. +++.+..+..+. ..+..++++++
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 999999997 45666666443 35689999999999888887776 9999995 567777766543 34778999996
Q ss_pred CCeEEEEEECCCEEEEEECCCC
Q 008050 507 EGYFLVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~~~ 528 (579)
+.++++ +.++.|++|++...
T Consensus 262 -g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 -GSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TEEEEE-ETTTEEEEEECSCC
T ss_pred -CcEEEE-CCCCeEEEEEcccc
Confidence 677766 67999999997543
No 171
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2.8e-17 Score=167.25 Aligned_cols=242 Identities=16% Similarity=0.098 Sum_probs=171.3
Q ss_pred CeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCeeEEEEeCCC------CCeEEEEEccCCCEEEEEeCC-----------
Q 008050 288 PLSGCSYSHDGNLLA-TSSLSGVVKIWSMPRLQKFSALKGHT------ERATDVTFSPVSNHVATSSAD----------- 349 (579)
Q Consensus 288 ~I~~~~~spdg~~la-tgs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~sp~~~~l~s~s~d----------- 349 (579)
.+..++|+|+|++++ ++..++.|.+||+.+++....+..+. ..+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578999999998665 45578999999999999887776432 237899999999999998865
Q ss_pred -CcEEEEeCCC----CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC-C-----------
Q 008050 350 -RTARLWNTDG----SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHS-R----------- 412 (579)
Q Consensus 350 -g~I~iwd~~~----~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~----------- 412 (579)
+.|.+||+.+ +.+..+. +...+.+++|+|+|+ +++++ +.|++||+.+++....+..+. .
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence 8999999654 2223333 334688999999999 66654 349999999988776654331 0
Q ss_pred ------------CeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCeE-EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 008050 413 ------------SVYGIAFHPDGSLAASCG-LDALARVWDLRTGRS-ILALEGHVKPVLGISFSP-NGYHLATGGEDNTC 477 (579)
Q Consensus 413 ------------~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~~~-~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~I 477 (579)
...++++++++....... ....+..+|..+++. ...+..+...+.+++|+| +|++++++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 234566665542111000 011122355555432 122334566789999999 99999988 8899
Q ss_pred EEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC
Q 008050 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH 537 (579)
Q Consensus 478 ~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h 537 (579)
.+||+.+++.+..+..+ ..+.+++|+++ +.+|++++.++.|++||..+++.+..+..+
T Consensus 278 ~~~d~~~~~~~~~~~~~-~~~~~~~~s~d-g~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLD-HTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEETTTTEEEEEEECS-SCCCEEEECSS-SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEECccCeEEEEEcCC-CCccceEECCC-CCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99999999988887654 34678999997 455555778899999999999988887644
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=1.4e-16 Score=162.47 Aligned_cols=241 Identities=12% Similarity=0.139 Sum_probs=189.0
Q ss_pred CCCeEEEEEccCCCEEEEEeCC------------------------CcEEEEeCC-CCeeEEEe-cccCCeEEEEEecCC
Q 008050 328 TERATDVTFSPVSNHVATSSAD------------------------RTARLWNTD-GSLLNTFQ-GHLDRLARMAFHPSG 381 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~d------------------------g~I~iwd~~-~~~~~~~~-~h~~~I~~l~~sp~~ 381 (579)
-+.+.+|+++++|+++++...+ +.|.+||.. ++.+..+. ++......++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999999888777 479999975 56554443 344678999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEE---------ecCCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEeCCCCeEEEEE
Q 008050 382 KYLGTTSFDKTWRLWDVDTGV-ELLLQ---------EGHSRSVYGIAFHP-DGSLAASCG-LDALARVWDLRTGRSILAL 449 (579)
Q Consensus 382 ~~l~s~s~dg~I~lwd~~~~~-~~~~~---------~~~~~~V~~l~~sp-dg~~l~sg~-~dg~I~iwd~~~~~~~~~~ 449 (579)
+++++...++.|++||..... .+..+ ..+.....+++|++ ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986552 33333 23445689999999 788888886 699999999 567777766
Q ss_pred ecC----------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEe--CCCCCeEEEEEeeCCCeEEEEEE-
Q 008050 450 EGH----------VKPVLGISFSPN-GYHLATGGEDNTCRIWDLRKRKSLYVIP--AHSNLISQVKFEPQEGYFLVTGS- 515 (579)
Q Consensus 450 ~~~----------~~~I~si~~sp~-g~~l~tgs~Dg~I~iwDl~~~~~~~~~~--~~~~~V~~v~~sp~~~~~l~sgs- 515 (579)
... ......|+++++ |.++++...++.|++||..+++.+..+. .+...+..++|+| +.++.+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 422 234889999998 7777777788999999998898888874 3556788899998 34444333
Q ss_pred ------CCCEEEEEECCCCeEEEEec---CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 516 ------YDMTVKVWSGRDFKLVKSLS---GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 516 ------~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.++.|++|+..+++.+..+. ++...+.+++++++|.++++...++.|++|++....
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 34589999999999998883 677789999999999878888889999999987544
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=2.5e-17 Score=170.42 Aligned_cols=271 Identities=11% Similarity=0.060 Sum_probs=196.9
Q ss_pred CCCEEEEEe------cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEeCCC-
Q 008050 297 DGNLLATSS------LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA----------DRTARLWNTDG- 359 (579)
Q Consensus 297 dg~~latgs------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~----------dg~I~iwd~~~- 359 (579)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+|++++++++.. ++.|.+||...
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666553 4789999999999998888876555 8999999999998863 57899999654
Q ss_pred CeeEEEecc------cCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEE-EecCCCCeEEEEEcCCC-CEEEEE
Q 008050 360 SLLNTFQGH------LDRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHPDG-SLAASC 429 (579)
Q Consensus 360 ~~~~~~~~h------~~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~spdg-~~l~sg 429 (579)
+.+..+... ......+.|+|+|++|+++.. +++|.+||+.+++.+.. .. .. ....+.+.|++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEE
Confidence 555555432 245678999999999999875 58999999999977765 43 22 23345677865 577888
Q ss_pred eCCCeEEEEeCCC-CeEEEEE------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEeCCC-----
Q 008050 430 GLDALARVWDLRT-GRSILAL------EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS--LYVIPAHS----- 495 (579)
Q Consensus 430 ~~dg~I~iwd~~~-~~~~~~~------~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~--~~~~~~~~----- 495 (579)
+.||.+.+|++.. ++..... .....++ .+.+++++..++..+.++.|.+||+..... +..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 8999999999865 5544221 1222222 233456777777788899999999865432 22222110
Q ss_pred -----CCeEEEEEeeCCCeEEEEEE----------CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 496 -----NLISQVKFEPQEGYFLVTGS----------YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 496 -----~~V~~v~~sp~~~~~l~sgs----------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
.....++|+++++.++++.. ..+.|.+||+.+++.+..+..+. +.+++|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 11123789998666665544 13589999999999999998777 999999999999998886 9
Q ss_pred eEEEEEcCCC--Ccccc
Q 008050 561 WIKLWSTRNK--GDEHA 575 (579)
Q Consensus 561 ~I~iW~~~~~--~~~~~ 575 (579)
.|.+||..++ +....
T Consensus 326 ~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRT 342 (361)
T ss_dssp CEEEEECSSSSCEEEEE
T ss_pred eEEEEECCCCcceeeEE
Confidence 9999999988 65544
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=7.8e-18 Score=188.01 Aligned_cols=245 Identities=14% Similarity=0.035 Sum_probs=176.7
Q ss_pred EEEEc--CCCCE-EEEEec-CCeEEEEeCC--CCeeEEEEeC-----CCCCeEEEEEccCCCEEEEEeCC----------
Q 008050 291 GCSYS--HDGNL-LATSSL-SGVVKIWSMP--RLQKFSALKG-----HTERATDVTFSPVSNHVATSSAD---------- 349 (579)
Q Consensus 291 ~~~~s--pdg~~-latgs~-dg~I~iwd~~--~~~~~~~l~~-----h~~~V~~l~~sp~~~~l~s~s~d---------- 349 (579)
...|+ |||++ |+.++. ++.|++|++. .......+.. |...+.+++|+|+|+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 55565 99998 776654 5667777765 2034455555 66788999999999999998876
Q ss_pred CcEEEEeCCC------CeeEEEe-cccCCeEEEEEecCCCEEEEEeCC--------CeEEEEECC-CC---cEEEEEecC
Q 008050 350 RTARLWNTDG------SLLNTFQ-GHLDRLARMAFHPSGKYLGTTSFD--------KTWRLWDVD-TG---VELLLQEGH 410 (579)
Q Consensus 350 g~I~iwd~~~------~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~d--------g~I~lwd~~-~~---~~~~~~~~~ 410 (579)
..|++|+..+ .....+. .+...+..+.|+|||++|+.++.+ ..|++||+. ++ .......++
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 5899999877 6666666 666778889999999999988755 379999998 56 444555566
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCeEEEEEecCCCC--------eEEEEEcCCCCEEEEEeCCCcEEEE
Q 008050 411 SRSVYGIAFHPDGSLAASCGLDA--LARVWDLRTGRSILALEGHVKP--------VLGISFSPNGYHLATGGEDNTCRIW 480 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~~~~--------I~si~~sp~g~~l~tgs~Dg~I~iw 480 (579)
...+..+.|+|||+++++++.+| .|.+||+.+++.......+... +.+++|+++++++++++. +.++||
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 78899999999999888888888 6777777677654433333222 567899999999999998 999999
Q ss_pred --ECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE-EECCC--EEEEEECCCCeEEEEecCCC
Q 008050 481 --DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT-GSYDM--TVKVWSGRDFKLVKSLSGHE 538 (579)
Q Consensus 481 --Dl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s-gs~dg--~I~iwd~~~~~~~~~l~~h~ 538 (579)
|+..++ +..+..+...+..+. +++++.++++ ++.+. .|++||+.+++.......|.
T Consensus 320 ~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 320 ILDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp EEETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCC
T ss_pred EEECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCc
Confidence 655454 677777777777661 3434454444 44443 46666777776554434443
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.79 E-value=3.8e-15 Score=148.07 Aligned_cols=279 Identities=10% Similarity=-0.031 Sum_probs=203.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEE-EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSA-LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~ 362 (579)
.+...+.+++++++|+++++...++.|.+||.. +..... +..+...+.++++++++.++++...++.|..|+.++..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~- 89 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII- 89 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-
Confidence 455689999999999988877668999999988 443322 22355789999999999988877778899999977543
Q ss_pred EEEe--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 363 NTFQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 363 ~~~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
..+. .....+..+++.++|.++++...++.|.+||. ++...... ......+.++++.++|.++++...++.|..||
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 3332 24557889999999987777777899999999 55444332 23456789999999998888777789999999
Q ss_pred CCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EeCCCCCeEEEEEeeCCCeEEEEEECC
Q 008050 440 LRTGRSILA-LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYV-IPAHSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 440 ~~~~~~~~~-~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
. +++.... +......+.+++++++|+++++...++.|.+||. +++.... ...+...+.+++++++ +.++++...+
T Consensus 169 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~ 245 (299)
T 2z2n_A 169 E-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG-IDLWFTEWGA 245 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST-TCEEEEETTT
T ss_pred C-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC-CCEEEeccCC
Confidence 9 6655432 2334456889999999987776667889999998 6654332 2334567889999986 6666665578
Q ss_pred CEEEEEECCCCeEEEE-ecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 518 MTVKVWSGRDFKLVKS-LSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 518 g~I~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
+.|.+||. +++.... +..+...+.++.+ ++|.++++.+ .+.|..++..+++
T Consensus 246 ~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 246 NKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 89999998 4543322 3345567999999 8887666554 6678888876653
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=3.7e-17 Score=169.63 Aligned_cols=258 Identities=11% Similarity=0.029 Sum_probs=183.3
Q ss_pred EEeCCCCeeEEEEeCCCCCeEE-----EEEccCCCEEEEEeC-CC--cEEEEeCCCCeeEEEe-cccCCeEEEEEecCCC
Q 008050 312 IWSMPRLQKFSALKGHTERATD-----VTFSPVSNHVATSSA-DR--TARLWNTDGSLLNTFQ-GHLDRLARMAFHPSGK 382 (579)
Q Consensus 312 iwd~~~~~~~~~l~~h~~~V~~-----l~~sp~~~~l~s~s~-dg--~I~iwd~~~~~~~~~~-~h~~~I~~l~~sp~~~ 382 (579)
.++..++..+..+..|...... .+|+|+|++|+.++. +| .|.+|+..+.....+. ++...+..+.|+|+|+
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 4566778888888888776666 889999999999887 66 4888887766555544 4444455678999999
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEE--EcCCCCEEEEE----------------------eCCCeEEEE
Q 008050 383 YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIA--FHPDGSLAASC----------------------GLDALARVW 438 (579)
Q Consensus 383 ~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~--~spdg~~l~sg----------------------~~dg~I~iw 438 (579)
+|+.++.++.|++||+.+++.......+...+.... +++++.+++.. +.++.|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999999999988777766665554443 48999988743 234789999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEEeCCC--CCeEEEEEeeCCCe
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSP-NGYHLATGGED------NTCRIWDLRKRKSLYVIPAHS--NLISQVKFEPQEGY 509 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~D------g~I~iwDl~~~~~~~~~~~~~--~~V~~v~~sp~~~~ 509 (579)
|+.+++... +..+...+..+.|+| +|+.|+..+.+ ..|.+||+..+. ...+..+. ..+..+.|+|++..
T Consensus 174 d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 174 DLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp ETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCE
Confidence 999986544 344566789999999 99999887753 378888876544 33444443 24778899998555
Q ss_pred EEEEEECCC----EEEEEECCCCeE--EEEecCCCCc---EEEEEEcCCCCEEEEE---------EcCCeEEEEEcCCCC
Q 008050 510 FLVTGSYDM----TVKVWSGRDFKL--VKSLSGHEAK---VTSLDIHPDEQSIATV---------SHDRWIKLWSTRNKG 571 (579)
Q Consensus 510 ~l~sgs~dg----~I~iwd~~~~~~--~~~l~~h~~~---V~~l~~s~dg~~L~s~---------s~Dg~I~iW~~~~~~ 571 (579)
+++++..++ .|++||+.+++. +..+.++... ...+.|+|||+.|+.. ..+..|++|++.+++
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 545444322 399999998874 3334331110 1123699999988754 456789999998754
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.77 E-value=3.1e-16 Score=156.86 Aligned_cols=248 Identities=14% Similarity=0.126 Sum_probs=186.6
Q ss_pred CeeEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 318 LQKFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 318 ~~~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
+..+..+..+.....+++|+++++ +++++..++.|..|+..+. ...+..+...+.+++++++|+++++...++.|.+|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 334455556667789999999998 7788888999999998877 77777788889999999999987777777999999
Q ss_pred ECCCCcEEEEEecC----CCCeEEEEEcCCCCEEEEE----e-------------CCCeEEEEeCCCCeEEEEEecCCCC
Q 008050 397 DVDTGVELLLQEGH----SRSVYGIAFHPDGSLAASC----G-------------LDALARVWDLRTGRSILALEGHVKP 455 (579)
Q Consensus 397 d~~~~~~~~~~~~~----~~~V~~l~~spdg~~l~sg----~-------------~dg~I~iwd~~~~~~~~~~~~~~~~ 455 (579)
|..+++........ ...+.+++++++|+++++. + ..+.|..|+.. ++ +..+..+...
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK 173 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence 99888765443221 2346789999999988873 2 13466666665 44 3444556667
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCce---eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE
Q 008050 456 VLGISFSPNGYHLATGGEDNTCRIWDLR-KRKS---LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 456 I~si~~sp~g~~l~tgs~Dg~I~iwDl~-~~~~---~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
...++|+|+|+.|++.+.++.|.+||+. ++.. ...+..+...+..++++++ ++++++. ++.|.+||.. ++.+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG-GLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT-SCEEEEE--TTEEEEECTT-SCEE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC-CCEEEEc--CCeEEEECCC-CCEE
Confidence 8999999999988777788999999987 4443 2333334556778999997 5655554 7899999976 7888
Q ss_pred EEecCCCCcEEEEEE-cCCCCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 532 KSLSGHEAKVTSLDI-HPDEQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 532 ~~l~~h~~~V~~l~~-s~dg~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
..+..+.. +++++| +++++.|++++.++ |.-++.++++..+
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH 291 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence 88877777 999999 58999999888764 6666776665543
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=4.2e-16 Score=175.76 Aligned_cols=274 Identities=13% Similarity=0.048 Sum_probs=195.6
Q ss_pred CCCCEEEEEecCC-----eEEEEeCCCCeeEEEEe------CCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCC
Q 008050 296 HDGNLLATSSLSG-----VVKIWSMPRLQKFSALK------GHTERATDVTFSPVSNHVATSSADR-----TARLWNTDG 359 (579)
Q Consensus 296 pdg~~latgs~dg-----~I~iwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~s~s~dg-----~I~iwd~~~ 359 (579)
|+|++++....++ .+.+.+...++....+. +|...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 6787776654332 34444444444332222 2444688999999999998776543 899999877
Q ss_pred CeeEEEecccCCeEEEEEecCCCEEEEEeCCCe----------------EEEEECCCCcE--EEEEec--CCCCeEEEEE
Q 008050 360 SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT----------------WRLWDVDTGVE--LLLQEG--HSRSVYGIAF 419 (579)
Q Consensus 360 ~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~----------------I~lwd~~~~~~--~~~~~~--~~~~V~~l~~ 419 (579)
............+..++|+|||+.|+.++.++. |++|++.++.. ...+.. +...+.++.|
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 240 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence 655443333334678999999999999988766 99999988762 233332 4556889999
Q ss_pred cCCCCEEEEEeC-----CCeEEEEeCCC------Ce-EEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECC
Q 008050 420 HPDGSLAASCGL-----DALARVWDLRT------GR-SILALEGHVKPVLGISFSPNGYHLATGGED----NTCRIWDLR 483 (579)
Q Consensus 420 spdg~~l~sg~~-----dg~I~iwd~~~------~~-~~~~~~~~~~~I~si~~sp~g~~l~tgs~D----g~I~iwDl~ 483 (579)
+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+.. +.|.+||+.
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 319 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT 319 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 999998887764 67899999986 43 45566666665655 488888888777653 369999998
Q ss_pred CCc--eeEEEeCCCC--CeEEEEEeeCCCeEEEEEECCCE--EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE-
Q 008050 484 KRK--SLYVIPAHSN--LISQVKFEPQEGYFLVTGSYDMT--VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV- 556 (579)
Q Consensus 484 ~~~--~~~~~~~~~~--~V~~v~~sp~~~~~l~sgs~dg~--I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~- 556 (579)
++. ....+..|.. .+..+.|++ ++.++++...++. |++|++.+++.+..+..+.+.+.++.++++++.|+..
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 320 DPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp SCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred CCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence 764 2344545543 678889985 4788888888885 6667877788888888888889999999998776543
Q ss_pred E---cCCeEEEEEcCCCC
Q 008050 557 S---HDRWIKLWSTRNKG 571 (579)
Q Consensus 557 s---~Dg~I~iW~~~~~~ 571 (579)
+ ..++|++||+.+++
T Consensus 399 ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECSSCCCEEEEEETTSSS
T ss_pred eCCCCCCEEEEEECCCCc
Confidence 2 34789999998765
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=2.4e-16 Score=163.02 Aligned_cols=255 Identities=12% Similarity=0.040 Sum_probs=188.3
Q ss_pred EEEEcCCCCEEEEEec----------CCeEEEEeCCCCeeEEEEeCC------CCCeEEEEEccCCCEEEEEeC--CCcE
Q 008050 291 GCSYSHDGNLLATSSL----------SGVVKIWSMPRLQKFSALKGH------TERATDVTFSPVSNHVATSSA--DRTA 352 (579)
Q Consensus 291 ~~~~spdg~~latgs~----------dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~sp~~~~l~s~s~--dg~I 352 (579)
.++|+|||++|++++. ++.|.+||..+++.+..+... ......++|+|+|++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999999863 678999999999988887643 345678999999999998874 5899
Q ss_pred EEEeCCCCeeEEE-ecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCC-CcEEEEE------ecCCCCeEEEEEcCCC
Q 008050 353 RLWNTDGSLLNTF-QGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDT-GVELLLQ------EGHSRSVYGIAFHPDG 423 (579)
Q Consensus 353 ~iwd~~~~~~~~~-~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~-~~~~~~~------~~~~~~V~~l~~spdg 423 (579)
.+||.....+... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++..... ......+ .+.+++++
T Consensus 134 ~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g 211 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK 211 (361)
T ss_dssp EEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS
T ss_pred EEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC
Confidence 9999766544332 2222 22335677766 5778889999999999865 4443221 1112222 23345677
Q ss_pred CEEEEEeCCCeEEEEeCCCCeE--EEEEec------CC----CCeEEEEEcCCCCEEEEEeC-----------CCcEEEE
Q 008050 424 SLAASCGLDALARVWDLRTGRS--ILALEG------HV----KPVLGISFSPNGYHLATGGE-----------DNTCRIW 480 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~--~~~~~~------~~----~~I~si~~sp~g~~l~tgs~-----------Dg~I~iw 480 (579)
..++..+.++.+.++|+..... +..+.. +. .....++|++++..++++.. .+.|.+|
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi 291 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM 291 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence 7777778899999999976542 222211 00 11123789999888877653 3489999
Q ss_pred ECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC--eEEEEecCCCCcEEEEEEcCCCC
Q 008050 481 DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF--KLVKSLSGHEAKVTSLDIHPDEQ 551 (579)
Q Consensus 481 Dl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 551 (579)
|+.+++.+..+..+. ...++|+|+ +.+|++++. +.|.+||..++ +.+..+..+......+.++|+|.
T Consensus 292 D~~t~~~v~~i~~~~--p~~ia~spd-g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 292 DTKTKQRVARIPGRD--ALSMTIDQQ-RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTTTEEEEEEECTT--CCEEEEETT-TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcEEEEEecCC--eeEEEECCC-CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999999876 899999998 557777776 99999999999 99999877777889999999986
No 180
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1.1e-16 Score=181.45 Aligned_cols=278 Identities=12% Similarity=0.123 Sum_probs=191.1
Q ss_pred eEEEEcCCCCEEEEEecC---------CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 290 SGCSYSHDGNLLATSSLS---------GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 290 ~~~~~spdg~~latgs~d---------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
..++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...+|||||+.|+.+. ++.|++|+..+.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 448899999999998875 67789999998754 4667888999999999999999885 689999997664
Q ss_pred eeEEEe--cccCC-----------------eEEEEEecCCCEEEEEeCCC------------------------------
Q 008050 361 LLNTFQ--GHLDR-----------------LARMAFHPSGKYLGTTSFDK------------------------------ 391 (579)
Q Consensus 361 ~~~~~~--~h~~~-----------------I~~l~~sp~~~~l~s~s~dg------------------------------ 391 (579)
....+. ++... ...+.|+|||++|+.++.|.
T Consensus 143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 443332 22222 23589999999999875331
Q ss_pred ------eEEEEECCC---C---cEEEEEe-----cCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCe----EE
Q 008050 392 ------TWRLWDVDT---G---VELLLQE-----GHSRSVYGIAFHPDGSLAASCGL----DALARVWDLRTGR----SI 446 (579)
Q Consensus 392 ------~I~lwd~~~---~---~~~~~~~-----~~~~~V~~l~~spdg~~l~sg~~----dg~I~iwd~~~~~----~~ 446 (579)
+|++||+.+ + +...... +|...+..++|+|||++++.... +..|.+||+.+++ +.
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 588899988 7 3333322 36777999999999996665543 3479999999887 22
Q ss_pred --EEE--ecCCCCeE-----EEEEcCCCCEEE-EEeC-C--CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 447 --LAL--EGHVKPVL-----GISFSPNGYHLA-TGGE-D--NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 447 --~~~--~~~~~~I~-----si~~sp~g~~l~-tgs~-D--g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
..+ ..|...|. ...|+|||+.|+ ..+. + ..|++||+..+... .+......+..+.+ ++++.++++
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~ 380 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYI 380 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEE
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEE
Confidence 111 44554444 788999999877 6653 3 36888998765544 44444455655543 445666666
Q ss_pred EEC----CC--EEEEEECCCCeEEEEecC----CCCcEEEEEEcCCCCEEEEEEcC---CeEEEEEcCCCC
Q 008050 514 GSY----DM--TVKVWSGRDFKLVKSLSG----HEAKVTSLDIHPDEQSIATVSHD---RWIKLWSTRNKG 571 (579)
Q Consensus 514 gs~----dg--~I~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~L~s~s~D---g~I~iW~~~~~~ 571 (579)
++. .+ .|+..++..+.....+.. ....+..+.|++++++++....+ ..+.+++..+++
T Consensus 381 ~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 381 SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp ESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred EecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 654 23 455556655444334432 23568899999999987655433 467888876554
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=7.4e-17 Score=167.33 Aligned_cols=256 Identities=9% Similarity=-0.021 Sum_probs=178.4
Q ss_pred EEEeCCCCeeEEEEeCCCCC-----eEEEEEccCCCEEEEEeCC---CcEEEEeCCCCeeEEEecccCCeE-EEEEecCC
Q 008050 311 KIWSMPRLQKFSALKGHTER-----ATDVTFSPVSNHVATSSAD---RTARLWNTDGSLLNTFQGHLDRLA-RMAFHPSG 381 (579)
Q Consensus 311 ~iwd~~~~~~~~~l~~h~~~-----V~~l~~sp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~h~~~I~-~l~~sp~~ 381 (579)
..+|..++..+..+..+... +.+++|+|+|++|+.+... ..|.+|+..+.....+..+..... .+.|+|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577777777777655444 7788999999998877553 368888987766666655444433 37899999
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCeEEE
Q 008050 382 KYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYG-------------------IAFHPDGSLAASC-----GLDALARV 437 (579)
Q Consensus 382 ~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~-------------------l~~spdg~~l~sg-----~~dg~I~i 437 (579)
++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999998776666544432222 3456777765544 35678999
Q ss_pred EeCCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEEeCC--CCCeEEEEEeeCCC
Q 008050 438 WDLRTGRSILALEGHVKPVLGISFSP-NGYHLATGGED------NTCRIWDLRKRKSLYVIPAH--SNLISQVKFEPQEG 508 (579)
Q Consensus 438 wd~~~~~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~D------g~I~iwDl~~~~~~~~~~~~--~~~V~~v~~sp~~~ 508 (579)
||+.+++..... .+...+..+.|+| +|..|+..+.+ ..|.+||+..++.. .+..+ ...+..+.|+|++.
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~ 250 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGS 250 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSS
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCC
Confidence 999988765544 4566789999999 78877776643 36889998655433 33233 23577899999844
Q ss_pred eEEEEEECC----CEEEEEECCCCeEEEEecCCCCcEEEEEEcC-CCCEEEEEE----------------cCCeEEEEEc
Q 008050 509 YFLVTGSYD----MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHP-DEQSIATVS----------------HDRWIKLWST 567 (579)
Q Consensus 509 ~~l~sgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s----------------~Dg~I~iW~~ 567 (579)
.+++++..+ +.|++||+.+++....... .. .. +.|++ +|++|++++ .++.|++|++
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 444443322 4599999988765433221 12 33 88999 999888765 3478999998
Q ss_pred CCCC
Q 008050 568 RNKG 571 (579)
Q Consensus 568 ~~~~ 571 (579)
.++.
T Consensus 328 ~~~~ 331 (396)
T 3c5m_A 328 KAKS 331 (396)
T ss_dssp TTTB
T ss_pred ccCc
Confidence 7664
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=1.6e-15 Score=171.01 Aligned_cols=244 Identities=8% Similarity=0.031 Sum_probs=180.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCc-------
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSLSG-----VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRT------- 351 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~dg-----~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~------- 351 (579)
+|...+.+++|||||++|+.+..++ .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555688999999999999876543 8999999999877643322 23678999999999999988766
Q ss_pred ---------EEEEeCCCCe---eEEEec--ccCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCC------Cc-EEE
Q 008050 352 ---------ARLWNTDGSL---LNTFQG--HLDRLARMAFHPSGKYLGTTSF-----DKTWRLWDVDT------GV-ELL 405 (579)
Q Consensus 352 ---------I~iwd~~~~~---~~~~~~--h~~~I~~l~~sp~~~~l~s~s~-----dg~I~lwd~~~------~~-~~~ 405 (579)
|++|++.+.. ...+.. +...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999976543 222333 4455789999999999988775 57899999986 42 334
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCe--EEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCc-
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLD----ALARVWDLRTGR--SILALEGHVK--PVLGISFSPNGYHLATGGEDNT- 476 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~d----g~I~iwd~~~~~--~~~~~~~~~~--~I~si~~sp~g~~l~tgs~Dg~- 476 (579)
.+..+...+.. .|+++|..|+..+.. +.|.+||+.++. ....+..|.. .+.+++|++++.++++...|+.
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 44455555554 488888877766543 369999998874 2344444443 5888999988888888888884
Q ss_pred -EEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECCCCe
Q 008050 477 -CRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGRDFK 529 (579)
Q Consensus 477 -I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~~~~ 529 (579)
|.+||+.+++.+..+..+.+.+..+.+++++..++++.+. .+.|++||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6677887788888888887788889999875556555443 4789999998766
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=2.1e-14 Score=156.69 Aligned_cols=272 Identities=11% Similarity=0.057 Sum_probs=204.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC---CCCeeEEEecccCCe
Q 008050 296 HDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT---DGSLLNTFQGHLDRL 372 (579)
Q Consensus 296 pdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~---~~~~~~~~~~h~~~I 372 (579)
+.+.++++...++.|.+||..+++.+..+... ..+.++.|+|+|+++++++.++.|.+||+ ..+.+..+.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 44556677778999999999999999888743 45779999999999999999999999997 455666665433 45
Q ss_pred EEEEEe----cCCCEEEEEeC-CCeEEEEECCCCcEEEEEecC-----------CCCeEEEEEcCCCC-EEEEEeCCCeE
Q 008050 373 ARMAFH----PSGKYLGTTSF-DKTWRLWDVDTGVELLLQEGH-----------SRSVYGIAFHPDGS-LAASCGLDALA 435 (579)
Q Consensus 373 ~~l~~s----p~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~-----------~~~V~~l~~spdg~-~l~sg~~dg~I 435 (579)
..+.|+ |+|+++++++. +++|.+||..+.+.+...... ...+..+.+++++. +++....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69998888776 499999999998887765421 12577888888766 45555667999
Q ss_pred EEEeCCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeC-----CCCCeEEEEEeeCCC
Q 008050 436 RVWDLRTGRSILALE-GHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPA-----HSNLISQVKFEPQEG 508 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~-~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~-----~~~~V~~v~~sp~~~ 508 (579)
.++|....+...... ........+.|+++|++|++++ .++.|.+||+.+++.+..+.. |.+.-..+ ++|+++
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g 401 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFG 401 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCC
Confidence 999998764332221 2334577899999999987766 678999999999988877765 32211122 577656
Q ss_pred eEEEEEE-CCCEEEEEECCC-------CeEEEEecCCCCcEEEEEEcCCCCEEEEEEc-------CCeEEEEEcCCC
Q 008050 509 YFLVTGS-YDMTVKVWSGRD-------FKLVKSLSGHEAKVTSLDIHPDEQSIATVSH-------DRWIKLWSTRNK 570 (579)
Q Consensus 509 ~~l~sgs-~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-------Dg~I~iW~~~~~ 570 (579)
.+++++. .++.|.++|..+ ++.+.++......-..+.++|++++|++... .++|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6656554 468999999988 8888888765444455778999999988763 358999999876
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=3.7e-16 Score=175.77 Aligned_cols=271 Identities=13% Similarity=-0.020 Sum_probs=186.3
Q ss_pred cCCCCEEEEEecCC-----eEEEEeCCCCeeEEEEe------CCCCCeEEEEEccCCCEEEEE-----eCCCcEEEEeCC
Q 008050 295 SHDGNLLATSSLSG-----VVKIWSMPRLQKFSALK------GHTERATDVTFSPVSNHVATS-----SADRTARLWNTD 358 (579)
Q Consensus 295 spdg~~latgs~dg-----~I~iwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~s~-----s~dg~I~iwd~~ 358 (579)
+++|++++....++ .|.+.+...+.....+. +|...+.+++|||||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 36788887766543 34444544444333332 355579999999999998843 334689999977
Q ss_pred CCeeEEEecccCCe--EEEEEecCCCEEEEEeCCCe-------------EEEEECCCCc--EEEEE--ecCCCCeEEEEE
Q 008050 359 GSLLNTFQGHLDRL--ARMAFHPSGKYLGTTSFDKT-------------WRLWDVDTGV--ELLLQ--EGHSRSVYGIAF 419 (579)
Q Consensus 359 ~~~~~~~~~h~~~I--~~l~~sp~~~~l~s~s~dg~-------------I~lwd~~~~~--~~~~~--~~~~~~V~~l~~ 419 (579)
+..... ..+...+ ..++|+|+|+.|+.++.|.. |++|++.++. ....+ ..+...+.++.|
T Consensus 156 tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 156 SGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 654320 1122222 68999999999999998776 9999999876 22333 234567889999
Q ss_pred cCCCCEEEEEeCCC----eEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEECCCCce--eE
Q 008050 420 HPDGSLAASCGLDA----LARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE----DNTCRIWDLRKRKS--LY 489 (579)
Q Consensus 420 spdg~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~----Dg~I~iwDl~~~~~--~~ 489 (579)
+|||++|+.++.++ .|.+||..++. ...+..+...+....| ++|. |+..+. ++.|.+||+.++.. ..
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 99999888877665 67777766554 3444455555666666 5666 544443 57899999987653 23
Q ss_pred EEeC-C-CCCeEEEEEeeCCCeEEEEEECCCEEEEEECC-CCeEEEEecCC-CCcEEEEEEcCCCCEEEEEE----cCCe
Q 008050 490 VIPA-H-SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR-DFKLVKSLSGH-EAKVTSLDIHPDEQSIATVS----HDRW 561 (579)
Q Consensus 490 ~~~~-~-~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s----~Dg~ 561 (579)
.+.. + ...+..+.|+ ++.++++...|+..+||.+. +++.+..+..+ .+.|..+.++++++.|+... ..++
T Consensus 312 ~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred EEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 3333 3 4457888887 47889999999988888654 45566666655 66788889999998766333 3478
Q ss_pred EEEEEcCCCC
Q 008050 562 IKLWSTRNKG 571 (579)
Q Consensus 562 I~iW~~~~~~ 571 (579)
|++||+.+++
T Consensus 390 v~~~d~~~g~ 399 (695)
T 2bkl_A 390 IYKTSVSTGK 399 (695)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999998765
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=4.9e-15 Score=148.12 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=175.8
Q ss_pred CCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCee
Q 008050 285 DDRPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLL 362 (579)
Q Consensus 285 h~~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~ 362 (579)
+.....+++|+++|+ +++++..++.|..|+..++ ...+..+...+.+++|+++|+++++...++.|.+|+. +++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 455678999999998 7888888999999999887 6667778888999999999998877777789999997 44433
Q ss_pred EEEecc----cCCeEEEEEecCCCEEEEE----e-------------CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC
Q 008050 363 NTFQGH----LDRLARMAFHPSGKYLGTT----S-------------FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP 421 (579)
Q Consensus 363 ~~~~~h----~~~I~~l~~sp~~~~l~s~----s-------------~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp 421 (579)
...... ...+..++++++|+++++. + ..+.|..|+.. +.. .....+......++|+|
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECT
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECC
Confidence 222211 2356789999999988873 2 13466667665 443 33445666789999999
Q ss_pred CCCEEEEEeCCCeEEEEeCC-CCeE---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCC
Q 008050 422 DGSLAASCGLDALARVWDLR-TGRS---ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL 497 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~-~~~~---~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~ 497 (579)
+++++++.+.++.|.+||+. +++. ...+..+...+.+++++++|+++++. ++.|.+||.. ++.+..+..+..
T Consensus 182 dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~- 257 (296)
T 3e5z_A 182 SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT- 257 (296)
T ss_dssp TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-
T ss_pred CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-
Confidence 99988777788999999997 4544 23333345567789999999866655 7889999985 788888887777
Q ss_pred eEEEEEe-eCCCeEEEEEECCCEEEEEECCCCeE
Q 008050 498 ISQVKFE-PQEGYFLVTGSYDMTVKVWSGRDFKL 530 (579)
Q Consensus 498 V~~v~~s-p~~~~~l~sgs~dg~I~iwd~~~~~~ 530 (579)
+++++|. ++ +..|++++.+ .+..++..+.++
T Consensus 258 ~~~~~f~~~d-~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 258 TSNLCFGGPE-GRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp CCEEEEESTT-SCEEEEEETT-EEEEEECSCCBC
T ss_pred ceeEEEECCC-CCEEEEEcCC-eEEEEEcccccc
Confidence 8999995 54 5667666665 466667666543
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=1.5e-15 Score=149.27 Aligned_cols=239 Identities=10% Similarity=0.012 Sum_probs=175.6
Q ss_pred CeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe
Q 008050 288 PLSGCSYSHDGNLLA-TSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ 366 (579)
Q Consensus 288 ~I~~~~~spdg~~la-tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 366 (579)
...+++++++|++++ +.+.++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+|+.++.....+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678899999999777 546789999999765543322223445788999999998666555 889999998876655443
Q ss_pred c-ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE
Q 008050 367 G-HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS 445 (579)
Q Consensus 367 ~-h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~ 445 (579)
. ....+..++++++|+++++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||...+..
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 2 336789999999998777777789999998766554433333334678899999999887777789999999887765
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 446 ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 446 ~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
......+...+.+|+++++|+++++...++.|.+||............+...+.+++++++ +.++++...++.|++|+.
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTT-CCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCC-CCEEEEECCCCEEEEEcC
Confidence 4433334466899999999977777777889999998655433322233356899999997 678888888999999987
Q ss_pred CCC
Q 008050 526 RDF 528 (579)
Q Consensus 526 ~~~ 528 (579)
...
T Consensus 263 ~~~ 265 (270)
T 1rwi_B 263 LEH 265 (270)
T ss_dssp CGG
T ss_pred CCc
Confidence 654
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.72 E-value=9.4e-14 Score=137.98 Aligned_cols=275 Identities=11% Similarity=-0.012 Sum_probs=199.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE-EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeE
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS-ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLN 363 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~ 363 (579)
....+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..|+.+++. .
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-T 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-E
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-E
Confidence 45678999999999988887778999999987 54433 222344679999999999888777778899999977554 3
Q ss_pred EEec--ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 364 TFQG--HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 364 ~~~~--h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
.+.. ....+.++++.++|+++++...++.|..||.. ++.... .......+.++++.++|+++++...++.|..||.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3322 34678999999999877777778899999987 554433 2224567899999999997777766889999998
Q ss_pred CCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EeCCCCCeEEEEEeeCCCeEEEEEECCC
Q 008050 441 RTGRSILA-LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYV-IPAHSNLISQVKFEPQEGYFLVTGSYDM 518 (579)
Q Consensus 441 ~~~~~~~~-~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l~sgs~dg 518 (579)
+++.... ...+...+.+++++++|+++++....+.|.+||. ++..... +..+...+.+++++++ +.++++...++
T Consensus 175 -~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~ 251 (300)
T 2qc5_A 175 -TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGAN 251 (300)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST-TCEEEEETTTT
T ss_pred -CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC-CCEEEeccCCC
Confidence 5554432 2234456899999999987776666778999998 4544332 3334566889999986 66666665678
Q ss_pred EEEEEECCCCeEE-EEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 519 TVKVWSGRDFKLV-KSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 519 ~I~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.|..|+. +++.. ..+......+.++.++++|+++++.. + .|..++..
T Consensus 252 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 252 QIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 9999998 44433 22333455688999999998655544 4 67777653
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=1.6e-15 Score=154.76 Aligned_cols=233 Identities=12% Similarity=0.124 Sum_probs=163.5
Q ss_pred CCeeEEEEcCCCCEEEEEecC---C--eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC------------
Q 008050 287 RPLSGCSYSHDGNLLATSSLS---G--VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD------------ 349 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~d---g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d------------ 349 (579)
..+.+++|||||++|+.++.+ + .|.+|++.+++.......+ . +.++.|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999999988754 3 4888888887766554443 3 9999999999998887642
Q ss_pred ---------------CcEEEEeCCCCee-EEEecccCCeEEEEEecCCCEEEEEeCCC-------eEEEEECCCCcEEEE
Q 008050 350 ---------------RTARLWNTDGSLL-NTFQGHLDRLARMAFHPSGKYLGTTSFDK-------TWRLWDVDTGVELLL 406 (579)
Q Consensus 350 ---------------g~I~iwd~~~~~~-~~~~~h~~~I~~l~~sp~~~~l~s~s~dg-------~I~lwd~~~~~~~~~ 406 (579)
..|++|++.+... ..+.. . .+..+.|+|+| ++++++.++ ...+|.+.+++....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l 213 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM 213 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence 5789999876655 55555 3 78899999999 777776542 334444335544333
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCeEEEEEecCCCCeEE-EEEcCCCCEEEEEeCCCcE
Q 008050 407 QEGHSRSVYGIAFHPDGSLAASCGLD--------ALARVWDLRTGRSILALEGHVKPVLG-ISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 407 ~~~~~~~V~~l~~spdg~~l~sg~~d--------g~I~iwd~~~~~~~~~~~~~~~~I~s-i~~sp~g~~l~tgs~Dg~I 477 (579)
. .+ ..+..+ +|||+.|+.++.+ ..|.+|| +++.......+...+.. +.|+ +| ++++++.++.+
T Consensus 214 ~-~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 214 F-EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp E-EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred c-cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 3 33 455544 8999988777644 4788888 55554444555667886 9999 88 88999999999
Q ss_pred EEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEE-EEEECCCCeEEEEecCCCC
Q 008050 478 RIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV-KVWSGRDFKLVKSLSGHEA 539 (579)
Q Consensus 478 ~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I-~iwd~~~~~~~~~l~~h~~ 539 (579)
+|| +.+++.. .+..+...|.++.|++ .++++++.++.. .+|.+. ++ ...+..|+.
T Consensus 286 ~l~-~~~g~~~-~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 286 NLY-IWDGEIK-PIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEE-EESSSEE-EEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEE-EcCCceE-EEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 999 8766553 3444567789999987 466666666554 666665 44 444555554
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=1.4e-15 Score=149.33 Aligned_cols=242 Identities=8% Similarity=-0.010 Sum_probs=176.1
Q ss_pred CeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCeeEEE-ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE
Q 008050 330 RATDVTFSPVSNHVA-TSSADRTARLWNTDGSLLNTF-QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ 407 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~-s~s~dg~I~iwd~~~~~~~~~-~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~ 407 (579)
...++++++++++++ +.+.++.|.+|+..+.....+ ..+...+.+++++++|+++++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998776 446789999999765443333 22335678999999998555555 889999998776543332
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 008050 408 EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS 487 (579)
Q Consensus 408 ~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~ 487 (579)
......+.+++++++|+++++...++.|.+|+..+.............+.+++++++|+++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999999888877889999998766544332223334578899999998777777788999999876654
Q ss_pred eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 488 LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 488 ~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
......+...+..++++++ +.++++...++.|.+|+............+...+.+++++++|+++++...++.|++|++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 4433333466889999986 577777777889999998765443322234457899999999998888888999999999
Q ss_pred CCCCcc
Q 008050 568 RNKGDE 573 (579)
Q Consensus 568 ~~~~~~ 573 (579)
......
T Consensus 263 ~~~~~~ 268 (270)
T 1rwi_B 263 LEHHHH 268 (270)
T ss_dssp CGGGSC
T ss_pred CCcccc
Confidence 766543
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=6.2e-15 Score=146.51 Aligned_cols=234 Identities=14% Similarity=0.053 Sum_probs=185.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEeccc-CCeEE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHT-ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHL-DRLAR 374 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~-~~I~~ 374 (579)
.+++|++++.++.|++||..+++.+..+..+. ..+.++.++|+|++|+ +.++.|..||.+++.+..+..+. ..+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 46899999999999999999999999998876 5789999999999888 45788999999889888888753 57888
Q ss_pred EEEecCCCEEEEEeC-CCeEEEEECCCCcEEEEEec------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 375 MAFHPSGKYLGTTSF-DKTWRLWDVDTGVELLLQEG------HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 375 l~~sp~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~~------~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
+.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+.+.++|+++++...++.|..||.. |+.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 999999999999887 888888886 6666555431 11234456788999999999999999999998 99999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC------CCeEEEEEeeCCCeEEEEEECC----
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS------NLISQVKFEPQEGYFLVTGSYD---- 517 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~------~~V~~v~~sp~~~~~l~sgs~d---- 517 (579)
.+.... .+.++.+.++|+++++++.++.|..||..+++.+..+..+. ..+..+...++ +.++++.+..
T Consensus 160 ~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~-G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 160 SVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQN-GGLYICNWQGHDRE 237 (276)
T ss_dssp EEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTT-SCEEEEEECTTCTT
T ss_pred EEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCC-CCEEEEeccCcccc
Confidence 887653 46678889999999999888899999999999999986432 23677777775 6666665311
Q ss_pred ----CEEEEEEC-CCCeEEEEecC
Q 008050 518 ----MTVKVWSG-RDFKLVKSLSG 536 (579)
Q Consensus 518 ----g~I~iwd~-~~~~~~~~l~~ 536 (579)
+..+++.+ .+++.+.++..
T Consensus 238 ~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 238 AGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp GGGSCCCSEEEECTTSBEEEEECC
T ss_pred ccccCCceEEEECCCCCEEEEecC
Confidence 13345554 46777766654
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=6.4e-14 Score=152.87 Aligned_cols=287 Identities=13% Similarity=0.058 Sum_probs=206.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCC--CCeeEEEEeCCCCCeEEEEEc----cCCCEEEEEeC-CCcEEEEeCCC-
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMP--RLQKFSALKGHTERATDVTFS----PVSNHVATSSA-DRTARLWNTDG- 359 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~s----p~~~~l~s~s~-dg~I~iwd~~~- 359 (579)
.+.++.|+|||+++++++.+|.|.+||+. +++.+..+.... ....++|+ |+|+++++++. ++.|.+||...
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 46689999999999999999999999996 888888877533 46799999 69999887765 58999999544
Q ss_pred CeeEEEec----------c-cCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEE-ecCCCCeEEEEEcCCCCEE
Q 008050 360 SLLNTFQG----------H-LDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDTGVELLLQ-EGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 360 ~~~~~~~~----------h-~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~~~~~~~~-~~~~~~V~~l~~spdg~~l 426 (579)
+.+..+.. | ...+..+.+++++..++ ....+|.|.++|......+... ........++.|+++|+++
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 45554432 1 12677888888776544 4455699999999876433322 2334567789999999987
Q ss_pred EEEe-CCCeEEEEeCCCCeEEEEEec-----CCCCeEEEEEcCCCCEE-EEEe-CCCcEEEEECCC-------CceeEEE
Q 008050 427 ASCG-LDALARVWDLRTGRSILALEG-----HVKPVLGISFSPNGYHL-ATGG-EDNTCRIWDLRK-------RKSLYVI 491 (579)
Q Consensus 427 ~sg~-~dg~I~iwd~~~~~~~~~~~~-----~~~~I~si~~sp~g~~l-~tgs-~Dg~I~iwDl~~-------~~~~~~~ 491 (579)
+++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..+ +++. .++.|.+||... .+.+.++
T Consensus 357 ~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i 435 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF 435 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence 7665 578999999999998777654 32212222 57875444 4443 568999999987 6778888
Q ss_pred eCCCCCeEEEEEeeCCCeEEEEEEC-------CCEEEEEECCCC-----e-EEEEec--------CCCCcEEEEEEcCCC
Q 008050 492 PAHSNLISQVKFEPQEGYFLVTGSY-------DMTVKVWSGRDF-----K-LVKSLS--------GHEAKVTSLDIHPDE 550 (579)
Q Consensus 492 ~~~~~~V~~v~~sp~~~~~l~sgs~-------dg~I~iwd~~~~-----~-~~~~l~--------~h~~~V~~l~~s~dg 550 (579)
......-..+.++|+ +.++++... .+.|.+||+.+. . .+..+. .....+..+.|+++|
T Consensus 436 ~~~g~g~~~i~~~p~-~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 514 (567)
T 1qks_A 436 PALGGGSLFIKTHPN-SQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 514 (567)
T ss_dssp ECSCSCCCCEECCTT-CSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTS
T ss_pred ecCCCCCEEEEeCCC-CCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCC
Confidence 765444344778997 555555442 358999998876 2 112221 123568999999999
Q ss_pred CEEEEEEc-----CCeEEEEEcCCCCcccccc
Q 008050 551 QSIATVSH-----DRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 551 ~~L~s~s~-----Dg~I~iW~~~~~~~~~~~~ 577 (579)
+++..+.+ ++.|.|+|..+.+....+.
T Consensus 515 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 515 TEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 99877643 7999999999987766554
No 192
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=4.1e-14 Score=143.61 Aligned_cols=232 Identities=12% Similarity=0.086 Sum_probs=169.8
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeC
Q 008050 282 ESGDDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD----RTARLWNT 357 (579)
Q Consensus 282 ~~gh~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d----g~I~iwd~ 357 (579)
..++...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|++++++++++..+ +.|.+|+.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 34556678999999999988888889999999998887665554567889999999999988877666 68999997
Q ss_pred CCCeeEEE-e--cccCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-E
Q 008050 358 DGSLLNTF-Q--GHLDRLARMAFHPSGKYLGTTSF------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA-A 427 (579)
Q Consensus 358 ~~~~~~~~-~--~h~~~I~~l~~sp~~~~l~s~s~------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l-~ 427 (579)
++.....+ . .+...+..+.++++|+++++... .+.|..||..+++..... .....+.+++|+++|+.+ +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v 198 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWV 198 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEE
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEE
Confidence 77655432 2 23457899999999987776654 366777777665544333 233457899999999855 4
Q ss_pred EEeCCCeEEEEeCCC-CeEEEE--------EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCC--
Q 008050 428 SCGLDALARVWDLRT-GRSILA--------LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSN-- 496 (579)
Q Consensus 428 sg~~dg~I~iwd~~~-~~~~~~--------~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~-- 496 (579)
+.+.++.|.+||+.+ +..+.. +.++ ..+..++++++|+++++...++.|.+||. +++.+..+..+..
T Consensus 199 ~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~ 276 (333)
T 2dg1_A 199 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE 276 (333)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred EeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcc
Confidence 455688999999964 332221 1122 35788999999998888778899999998 5677777765433
Q ss_pred ----CeEEEEEeeCCCeEEEEEEC
Q 008050 497 ----LISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 497 ----~V~~v~~sp~~~~~l~sgs~ 516 (579)
.+.+++|+++++.+++++..
T Consensus 277 g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 GHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ccccCcceEEECCCCCEEEEEeCc
Confidence 68899999874444444443
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=1.1e-14 Score=144.74 Aligned_cols=212 Identities=13% Similarity=0.015 Sum_probs=173.0
Q ss_pred CCCEEEEEeCCCcEEEEeC-CCCeeEEEeccc-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCCeE
Q 008050 339 VSNHVATSSADRTARLWNT-DGSLLNTFQGHL-DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH-SRSVY 415 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~-~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-~~~V~ 415 (579)
.+++|++++.++.|.+||. +++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 3578999999999999997 888888888766 5789999999999888 45788999999 88888887764 34788
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEec------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 008050 416 GIAFHPDGSLAASCGL-DALARVWDLRTGRSILALEG------HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~------~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~ 488 (579)
++.+.++|+++++.+. ++.|..+|. +|+.+..+.. +......+++.++|++|++.+.++.|.+||.. ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 888888885 7887777652 22235567789999999999999999999987 9999
Q ss_pred EEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC------CcEEEEEEcCCCCEEEEEE
Q 008050 489 YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE------AKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 489 ~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~s~dg~~L~s~s 557 (579)
..+..+. ...++.+.++ +.++++++.++.|..||..+++.+.++..+. ..+.++...++|+++++..
T Consensus 159 w~~~~~~-~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 159 NSVKLSG-TPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECSS-CCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEECCC-CccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 9988753 4556777775 7888888888899999999999998886432 2378889999998887763
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=8.1e-15 Score=149.37 Aligned_cols=263 Identities=8% Similarity=-0.051 Sum_probs=186.4
Q ss_pred cCCeEEEEeCCCCeeEEEEe------CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEe
Q 008050 306 LSGVVKIWSMPRLQKFSALK------GHTERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFH 378 (579)
Q Consensus 306 ~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~s 378 (579)
.++.|.+||..+++....+. ........+.+. .+.++++...++.|.+||.. ++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 47899999999988765431 122346778774 34455555667999999965 55556664 34677899998
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCCcEEEEEecCC-----CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEec
Q 008050 379 PSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGHS-----RSVYGIAFHPDGSLAASCG-LDALARVWDLRTGRSILALEG 451 (579)
Q Consensus 379 p~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~-----~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~ 451 (579)
++++ ++++. .++.|.+||..+++....+.... .....+++ .++.++++.. .++.|.+||+.+++.+..+..
T Consensus 93 ~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 8884 55555 89999999999998776554322 14456777 3444444443 489999999999998887765
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCceeEEEeCC-CCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 452 HVKPVLGISFSPNGYHLATGGED----------NTCRIWDLRKRKSLYVIPAH-SNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 452 ~~~~I~si~~sp~g~~l~tgs~D----------g~I~iwDl~~~~~~~~~~~~-~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
.. ....+.++++|++++++..+ +.|.+||..+++....+... ......++|+|++ .+|+++.. .|
T Consensus 171 g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v 246 (328)
T 3dsm_A 171 GI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DI 246 (328)
T ss_dssp SS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SE
T ss_pred CC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EE
Confidence 33 35789999999877776654 78999999999888777643 2367899999974 44554433 89
Q ss_pred EEEECCCCeEEEE--ecCCCCcEEEEEEcCC-CCEEEEE----EcCCeEEEEEcCCCCcccccc
Q 008050 521 KVWSGRDFKLVKS--LSGHEAKVTSLDIHPD-EQSIATV----SHDRWIKLWSTRNKGDEHAMD 577 (579)
Q Consensus 521 ~iwd~~~~~~~~~--l~~h~~~V~~l~~s~d-g~~L~s~----s~Dg~I~iW~~~~~~~~~~~~ 577 (579)
.+||..+++.... +..+......++++|+ +.++++. ..++.|.+|+.. ++....++
T Consensus 247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 9999988775421 2222456899999995 5445554 468899999998 76665543
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.67 E-value=6.5e-15 Score=166.88 Aligned_cols=273 Identities=15% Similarity=0.067 Sum_probs=184.2
Q ss_pred cCCCCEEEEEecCCe---EEEEe--CC---CCeeEEEE------eCCCCCeEEEEEccCCCEEEEEeCC-----CcEEEE
Q 008050 295 SHDGNLLATSSLSGV---VKIWS--MP---RLQKFSAL------KGHTERATDVTFSPVSNHVATSSAD-----RTARLW 355 (579)
Q Consensus 295 spdg~~latgs~dg~---I~iwd--~~---~~~~~~~l------~~h~~~V~~l~~sp~~~~l~s~s~d-----g~I~iw 355 (579)
+|+|++++....++. -.||. .. .+.....+ .+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 378888877664432 44454 33 33322221 1233468899999999999887654 369999
Q ss_pred eCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCe--------------EEEEECCCCcE--EEEEec--CCCCeEEE
Q 008050 356 NTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKT--------------WRLWDVDTGVE--LLLQEG--HSRSVYGI 417 (579)
Q Consensus 356 d~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~--------------I~lwd~~~~~~--~~~~~~--~~~~V~~l 417 (579)
|+.+........+...+..++|+|+ +.|+.++.++. |++|++.++.. ...+.. +...+.++
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9877554433222233467899999 98888887654 89999987752 333333 23358899
Q ss_pred EEcCCCCEEEEEeCCC-----eEEEEeCCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCC-
Q 008050 418 AFHPDGSLAASCGLDA-----LARVWDLRTG--RSILALEGHVKPVLGISFSPNGYHLATGGED----NTCRIWDLRKR- 485 (579)
Q Consensus 418 ~~spdg~~l~sg~~dg-----~I~iwd~~~~--~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D----g~I~iwDl~~~- 485 (579)
.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +++|..|+..+.+ +.|.+||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999888777544 8999999887 31455555555555553 4888888887754 45999999874
Q ss_pred -ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC-CCeEEEEecC-CCCcEEEEEEcCCCCEEEEE-E---c
Q 008050 486 -KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR-DFKLVKSLSG-HEAKVTSLDIHPDEQSIATV-S---H 558 (579)
Q Consensus 486 -~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~-~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~-s---~ 558 (579)
.....+..+...+..+.|. ++.++++...|+..+||.+. +++.+..+.. +.+.+..+.++++++.|+.. + .
T Consensus 353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3344444455556677777 47888888889987777543 4566666664 36678999999998866533 2 3
Q ss_pred CCeEEEEEcCCCC
Q 008050 559 DRWIKLWSTRNKG 571 (579)
Q Consensus 559 Dg~I~iW~~~~~~ 571 (579)
.++|++||+.+++
T Consensus 431 P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 431 PATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEETTTTE
T ss_pred CCEEEEEECCCCc
Confidence 4789999997754
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=3.5e-14 Score=144.63 Aligned_cols=250 Identities=10% Similarity=-0.041 Sum_probs=182.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee-EEEe
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL-NTFQ 366 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~ 366 (579)
....+.+. +++++++...++.|.+||..+++.+.++. .......+++++++..+++...++.|.+||..+..+ ..+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34566664 34555666668999999999999988886 456789999998885444444889999999766444 3444
Q ss_pred ccc-----CCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-------
Q 008050 367 GHL-----DRLARMAFHPSGKYLGTTS--FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD------- 432 (579)
Q Consensus 367 ~h~-----~~I~~l~~sp~~~~l~s~s--~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d------- 432 (579)
... .....+++ ++..|+++. .++.|.+||+.+++....+.. ......+.++++|++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccc
Confidence 322 14566777 355555555 489999999999987776643 3345688999999877776554
Q ss_pred ---CeEEEEeCCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeCCCCCeEEEEEeeC
Q 008050 433 ---ALARVWDLRTGRSILALEGH-VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY--VIPAHSNLISQVKFEPQ 506 (579)
Q Consensus 433 ---g~I~iwd~~~~~~~~~~~~~-~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~--~~~~~~~~V~~v~~sp~ 506 (579)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..+++... .+..+......++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 79999999999887776543 236899999999999888765 89999998876532 12222456889999997
Q ss_pred CCeEEEEE----ECCCEEEEEECCCCeEEEEecCCCCcEEEEEE
Q 008050 507 EGYFLVTG----SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDI 546 (579)
Q Consensus 507 ~~~~l~sg----s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 546 (579)
++.++++. ..++.|.+||.. ++.+..+... .....++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 68888877 678999999987 8888877532 22355555
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.66 E-value=8.5e-13 Score=136.86 Aligned_cols=273 Identities=11% Similarity=-0.040 Sum_probs=190.1
Q ss_pred EcCCCCEEEEEec--CC---eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEeCC
Q 008050 294 YSHDGNLLATSSL--SG---VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS----------ADRTARLWNTD 358 (579)
Q Consensus 294 ~spdg~~latgs~--dg---~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s----------~dg~I~iwd~~ 358 (579)
..++++++++... .+ .|.+||..+++.+..+.....+ .+.|+|++++++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4577777777653 22 8899999999998887754444 999999999998886 36789999965
Q ss_pred C-CeeEEEecc-------cCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEE-EecCCCCeEEEEEcCCC-CEE
Q 008050 359 G-SLLNTFQGH-------LDRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLL-QEGHSRSVYGIAFHPDG-SLA 426 (579)
Q Consensus 359 ~-~~~~~~~~h-------~~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~-~~~~~~~V~~l~~spdg-~~l 426 (579)
. +.+..+... ......+.|+|+|++|++++. ++.|.++| .+++.+.. ... .. |+.+.+++ ..+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceE
Confidence 3 444444321 123457999999999999875 47899999 99887766 432 22 24455654 456
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEEe-----cCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEeCC----
Q 008050 427 ASCGLDALARVWDLRTGRSILALE-----GHVKPV-LGISFSPNGYHLATGGEDNTCRIWDLRKRK--SLYVIPAH---- 494 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~~~~~~~~~~-----~~~~~I-~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~--~~~~~~~~---- 494 (579)
++.+.||.+.+||. +++.+.... ....++ ....+.+++..++..+..+.+.++|+.... .+..+...
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 67778999999999 887663322 111221 234566665555544578899999997542 22222211
Q ss_pred ------CCCeEEEEEeeCCCeEEEEEE---------CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC-EEEEEE-
Q 008050 495 ------SNLISQVKFEPQEGYFLVTGS---------YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ-SIATVS- 557 (579)
Q Consensus 495 ------~~~V~~v~~sp~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s- 557 (579)
......+.++++++.++++.. .++.|.++|..+++.+..+.. .....++.|++||+ +++++.
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcC
Confidence 122344778887555555433 246899999999999998863 33589999999999 777777
Q ss_pred cCCeEEEEEcCCCCcccc
Q 008050 558 HDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 558 ~Dg~I~iW~~~~~~~~~~ 575 (579)
.++.|.+||..+++....
T Consensus 339 ~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCCEEee
Confidence 589999999999887765
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=1.1e-13 Score=138.83 Aligned_cols=242 Identities=12% Similarity=0.095 Sum_probs=173.5
Q ss_pred eCCCCCeEEEEEccCCCEEEE-------EeCCCcEEEEeCCCCeeEEEec-----ccCCeEEEEEecC-CCEEEEEeCCC
Q 008050 325 KGHTERATDVTFSPVSNHVAT-------SSADRTARLWNTDGSLLNTFQG-----HLDRLARMAFHPS-GKYLGTTSFDK 391 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~~l~s-------~s~dg~I~iwd~~~~~~~~~~~-----h~~~I~~l~~sp~-~~~l~s~s~dg 391 (579)
...-....+++|++++.++++ +..++.|.+|+..+.....+.. +...+.++.++++ |+ |++++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCC
Confidence 334456789999999988877 5778999999965544444433 5567899999999 65 45555555
Q ss_pred eEEEEECCCCcEEEE-Eec----CCCCeEEEEEcCCCCEEEEEeCC---------------CeEEEEeCCCCeEEEEEec
Q 008050 392 TWRLWDVDTGVELLL-QEG----HSRSVYGIAFHPDGSLAASCGLD---------------ALARVWDLRTGRSILALEG 451 (579)
Q Consensus 392 ~I~lwd~~~~~~~~~-~~~----~~~~V~~l~~spdg~~l~sg~~d---------------g~I~iwd~~~~~~~~~~~~ 451 (579)
.|.+||.. ++.... ... ....+.+++++++|+++++...+ +.|..||.. ++.... ..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DT 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-cc
Confidence 89999998 665433 221 12357899999999888777655 578888876 544332 23
Q ss_pred CCCCeEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCc-----eeEEEeCCC-CCeEEEEEeeCCCeEEEEEECCCE
Q 008050 452 HVKPVLGISFS----PNGYHLATG-GEDNTCRIWDLR-KRK-----SLYVIPAHS-NLISQVKFEPQEGYFLVTGSYDMT 519 (579)
Q Consensus 452 ~~~~I~si~~s----p~g~~l~tg-s~Dg~I~iwDl~-~~~-----~~~~~~~~~-~~V~~v~~sp~~~~~l~sgs~dg~ 519 (579)
+......++|+ ++|+.|+++ ..++.|.+||+. .++ ....+..+. .....++++++ +.++++...++.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED-NNLLVANWGSSH 248 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT-CCEEEEEETTTE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC-CCEEEEEcCCCE
Confidence 33457889999 999766555 467899999986 343 222333333 56788999986 677777778899
Q ss_pred EEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEE-EcCCeEEEEEcCCCC
Q 008050 520 VKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATV-SHDRWIKLWSTRNKG 571 (579)
Q Consensus 520 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~iW~~~~~~ 571 (579)
|.+||..+++.+..+..+...+.+++|+++|++|+.+ ..++.|..|++...+
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 9999988777777776676789999999999966555 456889999987644
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=3.1e-15 Score=168.22 Aligned_cols=242 Identities=12% Similarity=-0.037 Sum_probs=170.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEE-----ecCCeEEEEeCCCCeeEEEEeCCCCCe--EEEEEccCCCEEEEEeCCCc-----
Q 008050 284 GDDRPLSGCSYSHDGNLLATS-----SLSGVVKIWSMPRLQKFSALKGHTERA--TDVTFSPVSNHVATSSADRT----- 351 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latg-----s~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~sp~~~~l~s~s~dg~----- 351 (579)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+-..+ ..++|+|+|+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 566678999999999999844 345689999999987641 1122222 68999999999999998776
Q ss_pred --------EEEEeCCCCe---eEEE--ecccCCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCcEEEEEecCCCCe
Q 008050 352 --------ARLWNTDGSL---LNTF--QGHLDRLARMAFHPSGKYLGTTSFDK----TWRLWDVDTGVELLLQEGHSRSV 414 (579)
Q Consensus 352 --------I~iwd~~~~~---~~~~--~~h~~~I~~l~~sp~~~~l~s~s~dg----~I~lwd~~~~~~~~~~~~~~~~V 414 (579)
|++|++.+.. ...+ ..+...+..+.|+|+|++|+.++.++ .|++||..++...... .+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV-KGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE-ECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee-cCCCce
Confidence 9999976532 2222 33456788999999999998888766 7888877666544444 444455
Q ss_pred EEEEEcCCCCEEEEEe---CCCeEEEEeCCCCeE--EEEEecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCc
Q 008050 415 YGIAFHPDGSLAASCG---LDALARVWDLRTGRS--ILALEGH--VKPVLGISFSPNGYHLATGGEDNTCRIWDLR-KRK 486 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~---~dg~I~iwd~~~~~~--~~~~~~~--~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~-~~~ 486 (579)
....+ ++|.+++.+. .++.|.+||+.++.. ...+..+ ...+.+++|+ ++.++++...|+..+||.+. .++
T Consensus 275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 66666 5565444444 258999999987753 2333333 4457888998 77788888899988887654 455
Q ss_pred eeEEEeCC-CCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECCCCeE
Q 008050 487 SLYVIPAH-SNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGRDFKL 530 (579)
Q Consensus 487 ~~~~~~~~-~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~~~~~ 530 (579)
.+..+..+ .+.+..+.+++++..++++.+. .+.|++||+.+++.
T Consensus 353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66666654 5667778888875555555543 47899999988763
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=1.7e-13 Score=137.46 Aligned_cols=238 Identities=13% Similarity=0.112 Sum_probs=171.7
Q ss_pred CCCeeEEEEcCCCCEEEE-------EecCCeEEEEeCCCCeeEEEEe----CCCCCeEEEEEccC-CCEEEEEeCCCcEE
Q 008050 286 DRPLSGCSYSHDGNLLAT-------SSLSGVVKIWSMPRLQKFSALK----GHTERATDVTFSPV-SNHVATSSADRTAR 353 (579)
Q Consensus 286 ~~~I~~~~~spdg~~lat-------gs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~sp~-~~~l~s~s~dg~I~ 353 (579)
-....+++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ ++++ .++..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCEE
Confidence 345688999999988888 6778999999988776543222 24567999999999 6544 444455799
Q ss_pred EEeCCCCeeEEE-ec-----ccCCeEEEEEecCCCEEEEEeCC---------------CeEEEEECCCCcEEEEEecCCC
Q 008050 354 LWNTDGSLLNTF-QG-----HLDRLARMAFHPSGKYLGTTSFD---------------KTWRLWDVDTGVELLLQEGHSR 412 (579)
Q Consensus 354 iwd~~~~~~~~~-~~-----h~~~I~~l~~sp~~~~l~s~s~d---------------g~I~lwd~~~~~~~~~~~~~~~ 412 (579)
+|+.+++ ...+ .. ....+.+++++++|+++++...+ +.|..||.. ++..... .+..
T Consensus 96 ~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~ 172 (314)
T 1pjx_A 96 VVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ 172 (314)
T ss_dssp EEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred EEeCCCC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence 9997744 3333 21 12457899999999877776655 578888876 5443332 3334
Q ss_pred CeEEEEEc----CCCCEEEEE-eCCCeEEEEeCC-CCeE-----EEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008050 413 SVYGIAFH----PDGSLAASC-GLDALARVWDLR-TGRS-----ILALEGHV-KPVLGISFSPNGYHLATGGEDNTCRIW 480 (579)
Q Consensus 413 ~V~~l~~s----pdg~~l~sg-~~dg~I~iwd~~-~~~~-----~~~~~~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iw 480 (579)
....++|+ ++++.++.+ ..++.|.+||+. +++. ...+..+. ..+..++++++|+++++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 56889999 999755544 567999999986 4442 22233333 557899999999988888788999999
Q ss_pred ECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 481 DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 481 Dl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
|..+++.+..+..+...+.+++|++++..++++...++.|..|++..
T Consensus 253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99877777777777778999999987433556666678999999764
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=2.2e-13 Score=140.33 Aligned_cols=278 Identities=10% Similarity=0.019 Sum_probs=195.7
Q ss_pred EcCCCCEEEEEec-----CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEeCC
Q 008050 294 YSHDGNLLATSSL-----SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS----------ADRTARLWNTD 358 (579)
Q Consensus 294 ~spdg~~latgs~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s----------~dg~I~iwd~~ 358 (579)
..|+++.+++... ++.|.++|..+++.+..+.....+ . +.++|+|++++++. .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 5688988888865 689999999999999998765555 4 99999999888775 36789999965
Q ss_pred C-CeeEEEecc-------cCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 359 G-SLLNTFQGH-------LDRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 359 ~-~~~~~~~~h-------~~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
. +.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+..+.... + ...+....+.+++
T Consensus 118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFM 194 (386)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEE
T ss_pred CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEE
Confidence 4 445555322 124567999999999998874 6899999999999887774322 1 2223334457778
Q ss_pred EeCCCeEEEEeCCC-CeEEEEEecCC----CCeE-EEEEc-CCCCEEEEEeCCCcEEEEECCCCc--eeEEEeC------
Q 008050 429 CGLDALARVWDLRT-GRSILALEGHV----KPVL-GISFS-PNGYHLATGGEDNTCRIWDLRKRK--SLYVIPA------ 493 (579)
Q Consensus 429 g~~dg~I~iwd~~~-~~~~~~~~~~~----~~I~-si~~s-p~g~~l~tgs~Dg~I~iwDl~~~~--~~~~~~~------ 493 (579)
.+.||.+.+.++.+ ++.......+. .++. ...|. ++|++++ .+.+|.|+++|+.+.. .+..+..
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER 273 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccc
Confidence 88899999999876 55433221111 2221 24554 5776555 5568999999997654 3333320
Q ss_pred ----CCCCeEEEEEeeCCCeEEEEEEC---------CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC-EEEEEE-c
Q 008050 494 ----HSNLISQVKFEPQEGYFLVTGSY---------DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ-SIATVS-H 558 (579)
Q Consensus 494 ----~~~~V~~v~~sp~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s-~ 558 (579)
.......+.++++++.++++-.. .+.|.++|+.+++.+..+... ..+.+|.|++|++ +|+++. .
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTG 352 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCC
Confidence 01223457778876665555431 257999999999999888632 3688999999997 676654 5
Q ss_pred CCeEEEEEcCCCCccccccC
Q 008050 559 DRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 559 Dg~I~iW~~~~~~~~~~~~~ 578 (579)
++.|.++|..+++...+++.
T Consensus 353 ~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp TTEEEEEETTTCCEEEEECC
T ss_pred CCeEEEEECCCCcEEEEecC
Confidence 89999999999988776653
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.63 E-value=1.5e-12 Score=129.12 Aligned_cols=236 Identities=10% Similarity=-0.002 Sum_probs=175.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE
Q 008050 326 GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE 403 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~ 403 (579)
.+...+.++++.++|.++++...++.|.+|+..+. ...+. .+...+.++++.++|.++++...++.|..||.. +..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 45568999999999998777666889999997743 44333 345678999999999877777778999999986 333
Q ss_pred EEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008050 404 LLL-QEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA-LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWD 481 (579)
Q Consensus 404 ~~~-~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwD 481 (579)
... .......+.++++.++|.++++...++.|.+||. +++.... ...+...+.+++++++|+++++...++.|.+||
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 222 2224567899999999988888777899999998 5544322 223445689999999998877776778999999
Q ss_pred CCCCceeEE-EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEE-ecCCCCcEEEEEEcCCCCEEEEEEcC
Q 008050 482 LRKRKSLYV-IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKS-LSGHEAKVTSLDIHPDEQSIATVSHD 559 (579)
Q Consensus 482 l~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~D 559 (579)
. +++.... +..+...+..++++++ +.++++...++.|.+||. +++.... +..+...+.+++++++|+++++...+
T Consensus 169 ~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 245 (299)
T 2z2n_A 169 E-SGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA 245 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred C-CCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence 8 6655432 2334556889999986 666666666889999998 6654332 33455679999999999866666577
Q ss_pred CeEEEEEc
Q 008050 560 RWIKLWST 567 (579)
Q Consensus 560 g~I~iW~~ 567 (579)
+.|.+|+.
T Consensus 246 ~~i~~~d~ 253 (299)
T 2z2n_A 246 NKIGRLTS 253 (299)
T ss_dssp TEEEEEET
T ss_pred ceEEEECC
Confidence 88999997
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.58 E-value=1.8e-12 Score=136.07 Aligned_cols=234 Identities=9% Similarity=0.013 Sum_probs=170.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCcEEEE
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK--TWRLWDVDTGVELLL 406 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg--~I~lwd~~~~~~~~~ 406 (579)
.....|+|+++++++++...++.|++|+.++..+..+........ ++|+++++.|+++..++ .|.+|+...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 357899999999977777778999999988776666554444445 99999999999988866 899999877655333
Q ss_pred E----ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE----EecCCCCe--EEEEEcCC-CCEEEEEeCCC
Q 008050 407 Q----EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA----LEGHVKPV--LGISFSPN-GYHLATGGEDN 475 (579)
Q Consensus 407 ~----~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~----~~~~~~~I--~si~~sp~-g~~l~tgs~Dg 475 (579)
. ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++...++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 3 22446678899999544555577789999999987764332 22222222 39999995 66666666788
Q ss_pred cEEEEECCCCceeEEEeCCC---------------CCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEecCC--
Q 008050 476 TCRIWDLRKRKSLYVIPAHS---------------NLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSLSGH-- 537 (579)
Q Consensus 476 ~I~iwDl~~~~~~~~~~~~~---------------~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~~h-- 537 (579)
.|+.||.... +..+.++. .....++++++ +.++++-+ .++.|+.|+..++... .+.++
T Consensus 290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~ 365 (409)
T 3hrp_A 290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVD 365 (409)
T ss_dssp EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEE-EEEECTT
T ss_pred EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCC
Confidence 9999997543 33333321 34788999997 66777777 8899999998777643 34333
Q ss_pred -------------CCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 538 -------------EAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 538 -------------~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
-.....++++++|.++++-..++.|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 245899999999887787778888988875
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=3.9e-13 Score=152.28 Aligned_cols=242 Identities=14% Similarity=0.032 Sum_probs=167.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCc--------
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLS-----GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRT-------- 351 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~-------- 351 (579)
|...+.+++|||||++|+.++.+ ..|++||+.+++.+... .+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999987654 36999999998876532 12222467899999 99988887654
Q ss_pred ------EEEEeCCCCe---eEEEec--ccCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCC--cEEEEEecCCCC
Q 008050 352 ------ARLWNTDGSL---LNTFQG--HLDRLARMAFHPSGKYLGTTSFDK-----TWRLWDVDTG--VELLLQEGHSRS 413 (579)
Q Consensus 352 ------I~iwd~~~~~---~~~~~~--h~~~I~~l~~sp~~~~l~s~s~dg-----~I~lwd~~~~--~~~~~~~~~~~~ 413 (579)
|++|++.+.. ...+.. +...+..+.|+|+|++|+..+.++ .|++||+.++ .....+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 8899975432 223333 223588999999999988887654 8999999887 413333344444
Q ss_pred eEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCc
Q 008050 414 VYGIAFHPDGSLAASCGL----DALARVWDLRTG--RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR-KRK 486 (579)
Q Consensus 414 V~~l~~spdg~~l~sg~~----dg~I~iwd~~~~--~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~-~~~ 486 (579)
+.... +++|..|+..+. ++.|.+||+.++ .....+..+...+.+++|+ ++.++++...|+..+||.+. ++.
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 44443 488888877765 356999999875 3333344444556678887 66778888888887776543 456
Q ss_pred eeEEEeC-CCCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECCCCeE
Q 008050 487 SLYVIPA-HSNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGRDFKL 530 (579)
Q Consensus 487 ~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~~~~~ 530 (579)
....+.. +.+.+..+.+++++..++++.+. .+.|++||+.+++.
T Consensus 397 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 397 PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6666654 35678889999976555555443 47899999988773
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=6.3e-12 Score=125.83 Aligned_cols=227 Identities=11% Similarity=0.063 Sum_probs=159.6
Q ss_pred CCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 008050 326 GHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL 404 (579)
Q Consensus 326 ~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~ 404 (579)
.+..-..+..|++++. ++++...++.|+.|+..+.....+. ....+.+++++++|+++++ . ++.|.+||..+++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 3444567899999655 5566666889999998776554443 4567899999999995444 4 678999999888655
Q ss_pred EEEecC----CCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 008050 405 LLQEGH----SRSVYGIAFHPDGSLAASCGL-----------DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLA 469 (579)
Q Consensus 405 ~~~~~~----~~~V~~l~~spdg~~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~ 469 (579)
...... ...+++++++++|+++++... .+.|..+|.. ++.. .+..+....+.++|+|+++.|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCEEE
Confidence 443321 234788999999997765432 2344444443 3332 2333334568999999998775
Q ss_pred EE-eCCCcEEEEEC--CCCce-----eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcE
Q 008050 470 TG-GEDNTCRIWDL--RKRKS-----LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKV 541 (579)
Q Consensus 470 tg-s~Dg~I~iwDl--~~~~~-----~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V 541 (579)
.+ +.++.|.+||+ .++.. +..+..+......++++++ +++.++...++.|.+||..+++.+..+..+...+
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE-GKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT-SCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC-CCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence 54 56789999997 34432 2222233456788999986 6777777778899999999899999988777789
Q ss_pred EEEEEc-CCCCEEEEEEc
Q 008050 542 TSLDIH-PDEQSIATVSH 558 (579)
Q Consensus 542 ~~l~~s-~dg~~L~s~s~ 558 (579)
++++|. ++++.|+.++.
T Consensus 244 t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEESGGGCEEEEEEB
T ss_pred eEEEEeCCCCCEEEEEcC
Confidence 999998 88887765553
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.55 E-value=7.3e-12 Score=125.39 Aligned_cols=226 Identities=15% Similarity=0.064 Sum_probs=158.9
Q ss_pred CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 008050 286 DRPLSGCSYSHD-GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 286 ~~~I~~~~~spd-g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~ 364 (579)
..-.-+..|+++ +.++++...++.|+.||..++... .+. +...+.+++|+++++++++ . ++.|.+||.++..+..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 334557889996 456666677899999999877652 333 4568999999999995554 4 5689999987655544
Q ss_pred Eecc-----cCCeEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE-E
Q 008050 365 FQGH-----LDRLARMAFHPSGKYLGTTSF-----------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA-A 427 (579)
Q Consensus 365 ~~~h-----~~~I~~l~~sp~~~~l~s~s~-----------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l-~ 427 (579)
+... ...++.++++++|+++++... .+.|+.++.. +.... ...+....+.++|+|+++.| +
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEE
Confidence 4322 245788999999996665432 2345555543 33322 22333456889999999866 4
Q ss_pred EEeCCCeEEEEeC--CCCeE-----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEE
Q 008050 428 SCGLDALARVWDL--RTGRS-----ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 428 sg~~dg~I~iwd~--~~~~~-----~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
+.+.++.|.+||+ .++.. ...+..+......++++++|++.++...++.|.+||..+++.+..+..+...+++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~ 245 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS 245 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence 5556789999987 45542 2223333456789999999988887777889999999889999999888778999
Q ss_pred EEEe-eCCCeEEEEEECC
Q 008050 501 VKFE-PQEGYFLVTGSYD 517 (579)
Q Consensus 501 v~~s-p~~~~~l~sgs~d 517 (579)
++|. ++.+.++++...+
T Consensus 246 ~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 246 CCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEESGGGCEEEEEEBCT
T ss_pred EEEeCCCCCEEEEEcCCc
Confidence 9998 7655555655543
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=3.8e-12 Score=133.64 Aligned_cols=233 Identities=10% Similarity=0.093 Sum_probs=170.4
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCe-eE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR--TARLWNTDGSL-LN 363 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg--~I~iwd~~~~~-~~ 363 (579)
.....++|+++|+++++...++.|++||..++......... .... ++|+++++.|+++..++ .|.+|+..+.. ..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 35778999999998888888899999999887776655543 3334 99999999999988866 78888865432 23
Q ss_pred EE----ecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEE----EecCCCCe-E-EEEEcCC-CCEEEEEeCC
Q 008050 364 TF----QGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLL----QEGHSRSV-Y-GIAFHPD-GSLAASCGLD 432 (579)
Q Consensus 364 ~~----~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~----~~~~~~~V-~-~l~~spd-g~~l~sg~~d 432 (579)
.+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|+ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 21456678999999655666677789999999988765443 22222222 3 8999994 6666776778
Q ss_pred CeEEEEeCCCCeEEEEEecCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeCC--
Q 008050 433 ALARVWDLRTGRSILALEGHV---------------KPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPAH-- 494 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~---------------~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~~-- 494 (579)
+.|+.|+.... +..+.++. .....++|+++|+++++-+ .++.|+.||+.++.. ..+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence 99999997654 33333332 3478999999999777777 789999999877764 333333
Q ss_pred -------------CCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 495 -------------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 495 -------------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
-.....++++++ +.++++...++.|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 235788999997 788888888888888764
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=1.2e-12 Score=137.18 Aligned_cols=274 Identities=10% Similarity=0.007 Sum_probs=193.0
Q ss_pred CCCCEEEEEecC-----CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEeCCC-
Q 008050 296 HDGNLLATSSLS-----GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS----------ADRTARLWNTDG- 359 (579)
Q Consensus 296 pdg~~latgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s----------~dg~I~iwd~~~- 359 (579)
++++.+++.... +.|.++|..+++.+..+..-..+ .+.++|++++|+++. .++.|.++|...
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 456666665542 69999999999999998865555 899999999888876 367899999654
Q ss_pred CeeEEEecc-------cCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 008050 360 SLLNTFQGH-------LDRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG-SLAASC 429 (579)
Q Consensus 360 ~~~~~~~~h-------~~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg-~~l~sg 429 (579)
+.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+..+.-.. . ....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEE
Confidence 555555421 233467899999999999875 5789999999998877665322 1 2333433 466667
Q ss_pred eCCCeEEEEeCCCCeEEEEE----ecCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEeCC--------
Q 008050 430 GLDALARVWDLRTGRSILAL----EGHVKPV-LGISFSPNGYHLATGGEDNTCRIWDLRKRKSL--YVIPAH-------- 494 (579)
Q Consensus 430 ~~dg~I~iwd~~~~~~~~~~----~~~~~~I-~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~--~~~~~~-------- 494 (579)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++..+..+.|.+.|+...... ..+...
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 77888888887655544321 1111121 23567888888887788899999998654321 111100
Q ss_pred --CCCeEEEEEeeCCCeEEEEEE---------CCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCC-EEEEEE-cCCe
Q 008050 495 --SNLISQVKFEPQEGYFLVTGS---------YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQ-SIATVS-HDRW 561 (579)
Q Consensus 495 --~~~V~~v~~sp~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s-~Dg~ 561 (579)
......+.+++++++++++.. .++.|.++|..+++.+.++... ....++.|++||+ +++++. .++.
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCe
Confidence 011223689998666665543 1357999999999999988632 2488999999999 888888 5899
Q ss_pred EEEEEcCCCCccccc
Q 008050 562 IKLWSTRNKGDEHAM 576 (579)
Q Consensus 562 I~iW~~~~~~~~~~~ 576 (579)
|.++|..+.+....+
T Consensus 395 VsVID~~t~kvv~tI 409 (426)
T 3c75_H 395 LHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEe
Confidence 999999999887665
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=3.3e-11 Score=119.47 Aligned_cols=235 Identities=10% Similarity=-0.015 Sum_probs=173.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE
Q 008050 327 HTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL 404 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~ 404 (579)
....+.++.+.+++.++++...++.|.+|+..++. ..+. .....+..+++.++|.++++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRI-KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCce-EEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45678999999999988877778999999977443 3332 234678899999999877776668899999988 5543
Q ss_pred EEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 008050 405 LLQ-EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL-ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 405 ~~~-~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl 482 (579)
... ......+.++++.++|+++++...++.|..||.. ++... .+......+.++++.++|+++++...++.|.+||.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 222 2234678999999999888887778899999987 55442 22334556899999999996666666789999998
Q ss_pred CCCceeEE-EeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE-EecCCCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 483 RKRKSLYV-IPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK-SLSGHEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 483 ~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
+++.... ...+...+..++++++ +.++++....+.|.+|+. +++... .+..+...+.+++++++|+++++...++
T Consensus 175 -~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 175 -TGKLEEYPLPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred -CCcEEEeeCCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 5554432 2234456889999986 666666666788999998 454433 2344556789999999998666665678
Q ss_pred eEEEEEc
Q 008050 561 WIKLWST 567 (579)
Q Consensus 561 ~I~iW~~ 567 (579)
.|..|+.
T Consensus 252 ~i~~~~~ 258 (300)
T 2qc5_A 252 QIGRITN 258 (300)
T ss_dssp EEEEECT
T ss_pred eEEEECC
Confidence 8999987
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=6.9e-12 Score=125.98 Aligned_cols=236 Identities=13% Similarity=0.099 Sum_probs=165.5
Q ss_pred eEEEEeCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q 008050 320 KFSALKGHTERATDVTFSPVSN-HVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV 398 (579)
Q Consensus 320 ~~~~l~~h~~~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~ 398 (579)
.+..+..+........|+++++ ++++...++.|..|+.+++ ...+..+...+..+.++++|+++++...++.|.+|+.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 3444555566788999999998 5666777899999998655 4556666778899999999986666556689999998
Q ss_pred CCCcEEEEEec----CCCCeEEEEEcCCCCEEEE----EeC-------------CCeEEEEeCCCCeEEEEEecCCCCeE
Q 008050 399 DTGVELLLQEG----HSRSVYGIAFHPDGSLAAS----CGL-------------DALARVWDLRTGRSILALEGHVKPVL 457 (579)
Q Consensus 399 ~~~~~~~~~~~----~~~~V~~l~~spdg~~l~s----g~~-------------dg~I~iwd~~~~~~~~~~~~~~~~I~ 457 (579)
. +........ ....+++++++++|+++++ |.. .+.|..||..+++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 543332211 1234678999999998886 332 356888888777654333 334578
Q ss_pred EEEEcCCCCEEEEEeCC------CcEEEEECCCCceeE---EE-eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 458 GISFSPNGYHLATGGED------NTCRIWDLRKRKSLY---VI-PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 458 si~~sp~g~~l~tgs~D------g~I~iwDl~~~~~~~---~~-~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
.++|+++++.|+++... +.|.+||+..+. +. .+ ....+....++++++ +++.+ ++.+ .|.+|+. +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~-G~lwv-~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRG-GWLWS-SSGT-GVCVFDS-D 266 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTT-SCEEE-CCSS-EEEEECT-T
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCC-CCEEE-ecCC-cEEEECC-C
Confidence 89999999988887665 789999987543 21 11 122344567889886 55444 3444 4999997 5
Q ss_pred CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
++.+..+..+. .+.+++|+++++.|+.++.++ |..++
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 77777776555 588999999999998888765 44433
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.50 E-value=1.5e-10 Score=119.91 Aligned_cols=238 Identities=8% Similarity=-0.057 Sum_probs=167.5
Q ss_pred EEEEcCCCCEEEEEe----------cCCeEEEEeCCCCeeEEEEeCC-------CCCeEEEEEccCCCEEEEEeC--CCc
Q 008050 291 GCSYSHDGNLLATSS----------LSGVVKIWSMPRLQKFSALKGH-------TERATDVTFSPVSNHVATSSA--DRT 351 (579)
Q Consensus 291 ~~~~spdg~~latgs----------~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp~~~~l~s~s~--dg~ 351 (579)
.++|||||++|+++. .++.|.+||..+++.+..+... ...-..+.|+|+|++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776532 123458999999999998874 478
Q ss_pred EEEEeCCCCeeEEE-ecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEe-----cCCCC-eEEEEEcCCC
Q 008050 352 ARLWNTDGSLLNTF-QGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQE-----GHSRS-VYGIAFHPDG 423 (579)
Q Consensus 352 I~iwd~~~~~~~~~-~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~-----~~~~~-V~~l~~spdg 423 (579)
|.++| .+..+... ..... ++.+.+++ +.+++.+.||.+.+||. +++...... ..... .....+.+++
T Consensus 150 v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence 99999 76443322 22222 24455555 45667778999999999 877663321 11112 1234556665
Q ss_pred CEEEEEeCCCeEEEEeCCCCe--EEEEEec----------CCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEE
Q 008050 424 SLAASCGLDALARVWDLRTGR--SILALEG----------HVKPVLGISFSPNGYHLATGGE----------DNTCRIWD 481 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~--~~~~~~~----------~~~~I~si~~sp~g~~l~tgs~----------Dg~I~iwD 481 (579)
..++..+..+.+.+.|+.++. .+..+.. .......+.++++++.++++.. ++.|.++|
T Consensus 225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID 304 (373)
T 2mad_H 225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence 554444578899999997653 2222221 1122445789999988888653 35799999
Q ss_pred CCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEe
Q 008050 482 LRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 482 l~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l 534 (579)
+.+++.+..+... ....++.|++++..+++++. .++.|.+||..+++.+..+
T Consensus 305 ~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 305 GLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999988754 35788999998553677666 5899999999999999884
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=2.6e-11 Score=123.15 Aligned_cols=222 Identities=16% Similarity=0.033 Sum_probs=155.6
Q ss_pred CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 008050 330 RATDVTFSPVSN-HVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408 (579)
Q Consensus 330 ~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~ 408 (579)
-..+..|++++. ++++...++.|..|+..+.....+. ....+.++.|+++|+++++. . ..|.+||..+++......
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 356788999755 5566666789999998776655544 34678999999999876654 3 459999998887654432
Q ss_pred cC----CCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcE
Q 008050 409 GH----SRSVYGIAFHPDGSLAASCGL------DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATG-GEDNTC 477 (579)
Q Consensus 409 ~~----~~~V~~l~~spdg~~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tg-s~Dg~I 477 (579)
.. ...++++.++++|+++++... .+.|..+| +++... +..+......++|+++|+.|+.+ +.++.|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 11 235889999999987765542 25666666 454332 32333457899999999877655 457899
Q ss_pred EEEECC--CC-ce-----eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEc-C
Q 008050 478 RIWDLR--KR-KS-----LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH-P 548 (579)
Q Consensus 478 ~iwDl~--~~-~~-----~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s-~ 548 (579)
.+||+. ++ .. +..+.........++++++ +.++++...++.|.+||. +++.+..+..+...+++++|+ +
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 999986 55 31 2222223455778999886 566666666789999998 677777777777789999998 8
Q ss_pred CCCEEEEEEcC
Q 008050 549 DEQSIATVSHD 559 (579)
Q Consensus 549 dg~~L~s~s~D 559 (579)
+++.|+.++..
T Consensus 282 d~~~L~vt~~~ 292 (326)
T 2ghs_A 282 DASRLLVTSAR 292 (326)
T ss_dssp TSCEEEEEEBC
T ss_pred CCCEEEEEecC
Confidence 88877655543
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.48 E-value=5.5e-11 Score=120.75 Aligned_cols=221 Identities=15% Similarity=0.066 Sum_probs=155.0
Q ss_pred eeEEEEcCCC-CEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec
Q 008050 289 LSGCSYSHDG-NLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 289 I~~~~~spdg-~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 367 (579)
..+..|++++ .+++++..++.|..||..+++.. .+. ....+.++.|+++++++++. .+ .|.+||..+..+..+..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 4678999975 56666667899999999877643 333 35679999999998877654 44 49999976554444432
Q ss_pred c-----cCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCeE
Q 008050 368 H-----LDRLARMAFHPSGKYLGTTSF------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC-GLDALA 435 (579)
Q Consensus 368 h-----~~~I~~l~~sp~~~~l~s~s~------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg-~~dg~I 435 (579)
. ...+..+.++++|+++++... .+.|+.++ +++..... .+......++|+++++.++.+ +.++.|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 2 235889999999986665442 25666676 45433332 233457789999999866554 557899
Q ss_pred EEEeCC--CC-e-----EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEe-eC
Q 008050 436 RVWDLR--TG-R-----SILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFE-PQ 506 (579)
Q Consensus 436 ~iwd~~--~~-~-----~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~s-p~ 506 (579)
.+||+. ++ . ....+.........++++++|++.++...++.|.+||. +++.+..+..+...+++++|. ++
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence 999986 55 3 12223233455788999999987777767789999998 677777887777789999998 76
Q ss_pred CCeEEEEEECC
Q 008050 507 EGYFLVTGSYD 517 (579)
Q Consensus 507 ~~~~l~sgs~d 517 (579)
++.++++...+
T Consensus 283 ~~~L~vt~~~~ 293 (326)
T 2ghs_A 283 ASRLLVTSARE 293 (326)
T ss_dssp SCEEEEEEBCT
T ss_pred CCEEEEEecCC
Confidence 55555555444
No 214
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.48 E-value=9.3e-11 Score=121.15 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=183.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCC---------CCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEe
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHT---------ERATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQ 366 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~ 366 (579)
.+..|++++.+|.|..||..+++.+..+.... ..+.+. ...++..+++++.++.|..+|.. ++.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 36788888889999999999999887766432 223221 22245778889999999999954 66665555
Q ss_pred cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCe-----EEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 367 GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSV-----YGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 367 ~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V-----~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
..........+. +..+++++.++.|..+|..+++.+.......... ...... +..+++++.+|.+..+|..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence 433222222232 4578888999999999999999887765432211 112222 3467788889999999999
Q ss_pred CCeEEEEEecCCCC-------eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEE
Q 008050 442 TGRSILALEGHVKP-------VLGISFSP--NGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 442 ~~~~~~~~~~~~~~-------I~si~~sp--~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~ 512 (579)
+++.+..+...... +..+...| .+..+++++.++.+..+|..+++.+...... ....+... +..++
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~---~~~l~ 281 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIVD---GNRIY 281 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEEE---TTEEE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceEE---CCEEE
Confidence 99988776532110 00011111 2457888888999999999999988776542 34444443 34566
Q ss_pred EEECCCEEEEEECCCCeEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 513 TGSYDMTVKVWSGRDFKLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 513 sgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
.++.+|.|..+|..+++.+..... ....+....+. +..|+.++.+|.|.+||..+++....+++
T Consensus 282 ~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 282 LVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 677899999999999998877652 22223333333 56788999999999999999887665443
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=7.3e-12 Score=140.67 Aligned_cols=240 Identities=13% Similarity=0.113 Sum_probs=163.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCC----------
Q 008050 327 HTERATDVTFSPVSNHVATSSA-----DRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK---------- 391 (579)
Q Consensus 327 h~~~V~~l~~sp~~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg---------- 391 (579)
|...+..++|||||++|+.+.. ...|++||+.+........+......++|+ ||+.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 5567889999999998885432 257999997765433322222223578899 999999988874
Q ss_pred ---eEEEEECCCCcE--EEEEe--c-CCCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCe-EEEEEecCCCCeEE
Q 008050 392 ---TWRLWDVDTGVE--LLLQE--G-HSRSVYGIAFHPDGSLAASCGL----DALARVWDLRTGR-SILALEGHVKPVLG 458 (579)
Q Consensus 392 ---~I~lwd~~~~~~--~~~~~--~-~~~~V~~l~~spdg~~l~sg~~----dg~I~iwd~~~~~-~~~~~~~~~~~I~s 458 (579)
.|++|++.++.. ...+. . |...+.++.|+|||++|+.... .+.|++||+.++. ....+..+......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS 285 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence 399999987652 33332 2 3445788999999997765432 3589999998764 44555556665555
Q ss_pred EEEcCCCCEEEEEe-CC---CcEEEEECCCCce--eEEEeCCCCCeEEEEEeeCCCeEEEEEECCC--EEEEEECCCCeE
Q 008050 459 ISFSPNGYHLATGG-ED---NTCRIWDLRKRKS--LYVIPAHSNLISQVKFEPQEGYFLVTGSYDM--TVKVWSGRDFKL 530 (579)
Q Consensus 459 i~~sp~g~~l~tgs-~D---g~I~iwDl~~~~~--~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~ 530 (579)
. |+++|..|+..+ .+ +.|.+||+.++.. ...+..|...+. .|+++++.++++...+| .|++|++..+.
T Consensus 286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~- 361 (693)
T 3iuj_A 286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR- 361 (693)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-
Confidence 5 666666555544 33 5799999987654 345555655554 88887666666655565 68899987544
Q ss_pred EEEec-CCCCcEEEEEEcCCCCEEEEEEcC----CeEEEEEcCCCC
Q 008050 531 VKSLS-GHEAKVTSLDIHPDEQSIATVSHD----RWIKLWSTRNKG 571 (579)
Q Consensus 531 ~~~l~-~h~~~V~~l~~s~dg~~L~s~s~D----g~I~iW~~~~~~ 571 (579)
...+. .+.+.+..+.++++++.|+....+ ++|+.||+.+++
T Consensus 362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 44443 344567888888888877666555 889999987664
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=2.2e-11 Score=122.33 Aligned_cols=228 Identities=14% Similarity=0.082 Sum_probs=159.2
Q ss_pred CCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 008050 286 DRPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNT 364 (579)
Q Consensus 286 ~~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~ 364 (579)
.....+..|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++|+++|+++++...++.|.+|+.+++. ..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~-~~ 120 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA-HL 120 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE-EE
Confidence 34567889999998 6677778899999997 444 44555567789999999999977666566889999987653 33
Q ss_pred Eecc-----cCCeEEEEEecCCCEEEE----EeC-------------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCC
Q 008050 365 FQGH-----LDRLARMAFHPSGKYLGT----TSF-------------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD 422 (579)
Q Consensus 365 ~~~h-----~~~I~~l~~sp~~~~l~s----~s~-------------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd 422 (579)
+..+ ...+..+.++++|+++++ |.. .+.|+.||..+++..... .......++|+||
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spd 198 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPD 198 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCC
Confidence 3221 234678999999997776 332 357888888777654443 3345788999999
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCeEE--EEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 423 GSLAASCGLD------ALARVWDLRTGRSI--LAL-EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 423 g~~l~sg~~d------g~I~iwd~~~~~~~--~~~-~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
++.|+.+... +.|.+||+..+... ..+ .........++++++|+ |.+++.+ .|.+||. .++.+..+..
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~ 275 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPT 275 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEEC
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEEC
Confidence 9977777665 78999998765411 111 11234456789999998 4444554 4999997 5777777776
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
+. .+.+++|.++ +..|+.++.++ ++.++
T Consensus 276 ~~-~~~~~~f~~d-~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 276 PG-TASNCTFDQA-QQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SS-CCCEEEECTT-SCEEEEEETTE-EEEEE
T ss_pred CC-ceeEEEEeCC-CCEEEEEcCCe-EEEEE
Confidence 65 5888999976 55555555554 44444
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.46 E-value=1.6e-11 Score=126.38 Aligned_cols=253 Identities=12% Similarity=0.073 Sum_probs=174.7
Q ss_pred EEEEcCCCCEEEEEe----------cCCeEEEEeCCCCeeEEEEeCCC-------CCeEEEEEccCCCEEEEEeC--CCc
Q 008050 291 GCSYSHDGNLLATSS----------LSGVVKIWSMPRLQKFSALKGHT-------ERATDVTFSPVSNHVATSSA--DRT 351 (579)
Q Consensus 291 ~~~~spdg~~latgs----------~dg~I~iwd~~~~~~~~~l~~h~-------~~V~~l~~sp~~~~l~s~s~--dg~ 351 (579)
.++++|||++|++++ .++.|.+||..+++.+..+.... ..-..+.|+|+|++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 499999999988876 36789999999999988875321 24567999999999988874 689
Q ss_pred EEEEeCCCC-eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-CcEEEEEecCC----CCeE-EEEEc-CCC
Q 008050 352 ARLWNTDGS-LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-GVELLLQEGHS----RSVY-GIAFH-PDG 423 (579)
Q Consensus 352 I~iwd~~~~-~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-~~~~~~~~~~~----~~V~-~l~~s-pdg 423 (579)
|.++|.... .+.++... + ....+....+.+++.+.||++.+.++.+ ++.......+. ..+. ...|. ++|
T Consensus 162 VsVID~~t~~vv~tI~v~-g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVP-D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEETTTTEEEEEEECC-S--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEEEEEECC-C--cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 999997654 44555322 1 1223333456777888899999999976 55432221111 1221 23554 577
Q ss_pred CEEEEEeCCCeEEEEeCCCCe--EEEEEe----------cCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEE
Q 008050 424 SLAASCGLDALARVWDLRTGR--SILALE----------GHVKPVLGISFSPNGYHLATGGE----------DNTCRIWD 481 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~--~~~~~~----------~~~~~I~si~~sp~g~~l~tgs~----------Dg~I~iwD 481 (579)
++++ .+.+|.|.++|+.++. .+..+. .....+..++++++++.+++... .+.|.++|
T Consensus 239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD 317 (386)
T 3sjl_D 239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 317 (386)
T ss_dssp EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEE
Confidence 5555 5568999999997664 222222 01122345778998888888653 25799999
Q ss_pred CCCCceeEEEeCCCCCeEEEEEeeCCCeEEEE-EECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCC
Q 008050 482 LRKRKSLYVIPAHSNLISQVKFEPQEGYFLVT-GSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 482 l~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~s-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
+.+++.+..+... ..+.++.+++++..+|++ ...++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 318 ~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 318 AKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp TTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 9999999988764 367889999986545555 455899999999999999998643 22345556655
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.45 E-value=1.6e-11 Score=137.56 Aligned_cols=275 Identities=10% Similarity=0.041 Sum_probs=189.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC----------e-EEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTER----------A-TDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~----------V-~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~ 365 (579)
+..|++++.++.|+-+|..+++.+..+..+... + ..+.. .+..+++++.|+.|..+|. +++.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 667888888999999999999999988643321 0 11222 3578889999999999995 56777666
Q ss_pred ecc--c---CCeEE-EEEecCCCEEEEEe------CCCeEEEEECCCCcEEEEEecCC----------------------
Q 008050 366 QGH--L---DRLAR-MAFHPSGKYLGTTS------FDKTWRLWDVDTGVELLLQEGHS---------------------- 411 (579)
Q Consensus 366 ~~h--~---~~I~~-l~~sp~~~~l~s~s------~dg~I~lwd~~~~~~~~~~~~~~---------------------- 411 (579)
... . ..+.+ ..+. ++ .+++++ .+|.|+.||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 542 1 11111 1111 34 455543 36899999999999887764210
Q ss_pred ---------CCeEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCeEEEEEecCC---------C
Q 008050 412 ---------RSVYGIAFHPDGSLAASCGLDAL-------------------ARVWDLRTGRSILALEGHV---------K 454 (579)
Q Consensus 412 ---------~~V~~l~~spdg~~l~sg~~dg~-------------------I~iwd~~~~~~~~~~~~~~---------~ 454 (579)
.....+++++++.+++.++.++. |..||.++|+.+..+.... .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 01125788888889998887764 9999999999998886421 1
Q ss_pred CeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeCCC-CC---------------------------------
Q 008050 455 PVLGISFSPNGY---HLATGGEDNTCRIWDLRKRKSLYVIPAHS-NL--------------------------------- 497 (579)
Q Consensus 455 ~I~si~~sp~g~---~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-~~--------------------------------- 497 (579)
.+.......+|+ .++.++.+|.++++|..+++.+....... ..
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 222222223565 78899999999999999999875443211 00
Q ss_pred -----eEEEEEeeCCCeEEEEEEC---------------------------------------------CCEEEEEECCC
Q 008050 498 -----ISQVKFEPQEGYFLVTGSY---------------------------------------------DMTVKVWSGRD 527 (579)
Q Consensus 498 -----V~~v~~sp~~~~~l~sgs~---------------------------------------------dg~I~iwd~~~ 527 (579)
-..++|+|+.+. +++... +|.|+.||+.+
T Consensus 386 ~Gg~~w~~~a~dp~~~~-~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGL-VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TCSSCSSCCEEETTTTE-EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred ccccCCCcceECCCCCE-EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 112678886444 443311 47899999999
Q ss_pred CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
++.+..+..+.. +..-.++..+.++++++.||.|+.||..+++.+..+++
T Consensus 465 G~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 465 QQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp TEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 999888865442 33335566788999999999999999999998876653
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.1e-12 Score=133.52 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=138.0
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCc----------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 008050 371 RLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV----------ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDL 440 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~----------~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~ 440 (579)
.++.+++++...++++|+.++ +.+|++.... .......+.+ |+.++| |+++|+++ .+|.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999875 5559865332 1111224556 999999 88999998 8899999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 441 RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 441 ~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
++.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|+|+ | ++.|..||++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk-G--~~vg~~dg~i 184 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS-Q--LAVLLKDRSF 184 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS-E--EEEEETTSCE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC-c--eEEEEcCCcE
Confidence 987766667778888998888765 38888999999999999877654 3357999999997 4 6778999999
Q ss_pred EEEECCCCeE--EEEe------c---CCCCcEEEEEEcCCCCEEEEEE
Q 008050 521 KVWSGRDFKL--VKSL------S---GHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 521 ~iwd~~~~~~--~~~l------~---~h~~~V~~l~~s~dg~~L~s~s 557 (579)
++|+...+.. ..++ . +|...|.++.|.+++.++++-+
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999887775 5556 2 4788999999999999887643
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=3e-12 Score=132.29 Aligned_cols=171 Identities=15% Similarity=0.049 Sum_probs=135.1
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-----------eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-----------KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWN 356 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-----------~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd 356 (579)
+++.+++++...++++|+.++ +.+|++.+.. ..... .+.. |++++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 699999999999999999875 5569865433 11222 3666 999999 88999998 889999999
Q ss_pred CCC-CeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 357 TDG-SLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 357 ~~~-~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
+.. ........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|.|++|+|+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 654 334455667777888777654 38899999999999999887653 34589999999999 6789999999
Q ss_pred EEEeCCCCeE--EEEE------e---cCCCCeEEEEEcCCCCEEEEEe
Q 008050 436 RVWDLRTGRS--ILAL------E---GHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 436 ~iwd~~~~~~--~~~~------~---~~~~~I~si~~sp~g~~l~tgs 472 (579)
++|+...+.. ..++ . +|...|.+|+|.+++.++++-+
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999888775 5556 2 3678899999999998888744
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.43 E-value=1.8e-11 Score=136.71 Aligned_cols=276 Identities=10% Similarity=0.012 Sum_probs=195.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC-----------eEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTER-----------ATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~-----------V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~ 365 (579)
+..|++++.++.|+-+|..+++.+..+...... ...+.+ .+..|++++.|+.|..+|. +++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 667778888999999999999999887644221 112333 3578888999999999995 67777777
Q ss_pred ecc-c----CCeEE-EEEecCCCEEEEEeC------CCeEEEEECCCCcEEEEEecCCCC--------------------
Q 008050 366 QGH-L----DRLAR-MAFHPSGKYLGTTSF------DKTWRLWDVDTGVELLLQEGHSRS-------------------- 413 (579)
Q Consensus 366 ~~h-~----~~I~~-l~~sp~~~~l~s~s~------dg~I~lwd~~~~~~~~~~~~~~~~-------------------- 413 (579)
..+ . ..+.. ..+ .+..+++++. ++.|+.||..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 1 11211 111 2345565553 699999999999998776532211
Q ss_pred ------------eEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCeEEEEEecCC---------
Q 008050 414 ------------VYGIAFHPDGSLAASCGLDA-------------------LARVWDLRTGRSILALEGHV--------- 453 (579)
Q Consensus 414 ------------V~~l~~spdg~~l~sg~~dg-------------------~I~iwd~~~~~~~~~~~~~~--------- 453 (579)
...+++++++.+++.++.++ .|..+|.++|+.+..+....
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 12468888888888887664 59999999999998876421
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEeCCCCC-----------e---------------------
Q 008050 454 KPVLGISFSPNG---YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNL-----------I--------------------- 498 (579)
Q Consensus 454 ~~I~si~~sp~g---~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~-----------V--------------------- 498 (579)
.....+....+| ..+++++.+|.|+++|..+++.+..+...... +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 122233333467 68899999999999999999998776532100 1
Q ss_pred ---EEEEEeeCCCeEEEEEE------------------------------------------CCCEEEEEECCCCeEEEE
Q 008050 499 ---SQVKFEPQEGYFLVTGS------------------------------------------YDMTVKVWSGRDFKLVKS 533 (579)
Q Consensus 499 ---~~v~~sp~~~~~l~sgs------------------------------------------~dg~I~iwd~~~~~~~~~ 533 (579)
..++|+|+.+.+++... ..|.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 14678887554444322 127899999999998888
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 534 LSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 534 l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+.. ...+.+..+..++.++++++.||.+++||..+++.+..+.+
T Consensus 473 ~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 473 VEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 763 33445555667788999999999999999999998887654
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.43 E-value=9e-12 Score=139.92 Aligned_cols=241 Identities=13% Similarity=0.061 Sum_probs=162.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe-----cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC--------
Q 008050 284 GDDRPLSGCSYSHDGNLLATSS-----LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR-------- 350 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs-----~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg-------- 350 (579)
+|...+..++|||||++||.+. ....|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4566788999999999998643 23579999999998654311 11113578999 999999988874
Q ss_pred -----cEEEEeCCCCe---eEEEe--c-ccCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCc-EEEEEecCCCCe
Q 008050 351 -----TARLWNTDGSL---LNTFQ--G-HLDRLARMAFHPSGKYLGTTSF----DKTWRLWDVDTGV-ELLLQEGHSRSV 414 (579)
Q Consensus 351 -----~I~iwd~~~~~---~~~~~--~-h~~~I~~l~~sp~~~~l~s~s~----dg~I~lwd~~~~~-~~~~~~~~~~~V 414 (579)
.|++|++.+.. ...+. . |...+..+.|+|+|++|+.... ++.|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 39999965432 22232 2 3445788999999998866543 3589999998763 333444555555
Q ss_pred EEEEEcCCCCEE-EEEeCC---CeEEEEeCCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q 008050 415 YGIAFHPDGSLA-ASCGLD---ALARVWDLRTGRS--ILALEGHVKPVLGISFSPNGYHLATGGEDN---TCRIWDLRKR 485 (579)
Q Consensus 415 ~~l~~spdg~~l-~sg~~d---g~I~iwd~~~~~~--~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg---~I~iwDl~~~ 485 (579)
... |+++|..| +.+..+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++ .|++||+..
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g- 359 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG- 359 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS-
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC-
Confidence 554 55655544 444433 6899999988754 345555665555 8888888887776544 689999874
Q ss_pred ceeEEEeC-CCCCeEEEEEeeCCCeEEEEEECC---CEEEEEECCCCeE
Q 008050 486 KSLYVIPA-HSNLISQVKFEPQEGYFLVTGSYD---MTVKVWSGRDFKL 530 (579)
Q Consensus 486 ~~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~d---g~I~iwd~~~~~~ 530 (579)
.....+.. +.+.+..+.+++++..++++.+.. +.|+.||+.+++.
T Consensus 360 ~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 360 KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 44455543 345577777887766666554432 7899999877753
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.41 E-value=6.6e-12 Score=128.52 Aligned_cols=258 Identities=10% Similarity=-0.005 Sum_probs=171.3
Q ss_pred CCeeEEEEcCCCCEEEEEe--cCCeEEEEeCCCCeeEEEE-------eCCCCCeEEEEEccCCCEEEEEeC-----CCcE
Q 008050 287 RPLSGCSYSHDGNLLATSS--LSGVVKIWSMPRLQKFSAL-------KGHTERATDVTFSPVSNHVATSSA-----DRTA 352 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs--~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~l~~sp~~~~l~s~s~-----dg~I 352 (579)
.....++++++|+++++.. .++.+.||.+.+++. ..+ ..|-..+.+++|+++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5789999999999988864 234355555545543 222 124568999999999876665443 5789
Q ss_pred EEEeCCC-CeeEEEecc------cCCeEEEEEecCCCEEE-EEe---CCCeEEEEECCCCcEEEEEecCCCCeE-EEEEc
Q 008050 353 RLWNTDG-SLLNTFQGH------LDRLARMAFHPSGKYLG-TTS---FDKTWRLWDVDTGVELLLQEGHSRSVY-GIAFH 420 (579)
Q Consensus 353 ~iwd~~~-~~~~~~~~h------~~~I~~l~~sp~~~~l~-s~s---~dg~I~lwd~~~~~~~~~~~~~~~~V~-~l~~s 420 (579)
.+||..+ +.+..+... ...+..+++++++.+++ +.. .++.|.+||+.+++......+|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999764 445555432 23568999998655554 444 578999999998887666654422110 13344
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECC---CCc-----ee--E
Q 008050 421 PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN-TCRIWDLR---KRK-----SL--Y 489 (579)
Q Consensus 421 pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg-~I~iwDl~---~~~-----~~--~ 489 (579)
.+|..+.+.+.+|.+..|.. .+..|+|+++|++|+++..++ .|..++.. .+. .. .
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 56777777777887766641 367899999999898887666 55555532 111 00 0
Q ss_pred EEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC-CCCcEEEEEEcCCCCEEEEEEcCC
Q 008050 490 VIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG-HEAKVTSLDIHPDEQSIATVSHDR 560 (579)
Q Consensus 490 ~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg 560 (579)
...++.+....++++++ +.++++...++.|.+||..+++....... +...+++++|.++|.++++.+..+
T Consensus 242 ~~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp EEEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred EecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 11123345567999986 78888888899999999856664333322 245689999999998877776443
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.40 E-value=4e-10 Score=116.36 Aligned_cols=257 Identities=12% Similarity=0.033 Sum_probs=175.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCCe---
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDRL--- 372 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~I--- 372 (579)
++..+++++.+|.|..+|..+++.+................ +..+++++.++.|..+|. +++.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 46678888899999999999999888776543322222222 467888899999999995 566666554432211
Q ss_pred --EEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC-------eEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q 008050 373 --ARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRS-------VYGIAFHP--DGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 373 --~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-------V~~l~~sp--dg~~l~sg~~dg~I~iwd~~ 441 (579)
...... +..+++++.++.+..+|..+++.+......... +..+...| .+..++.++.+|.+..+|..
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 122222 457888888999999999999887766432110 00011111 24577888889999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEE
Q 008050 442 TGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTV 520 (579)
Q Consensus 442 ~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I 520 (579)
+++.+..... .....+.. ++..|++++.++.|..||..+++.+..... ....+...... +..|+.++.+|.|
T Consensus 258 tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l 330 (376)
T 3q7m_A 258 SGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYL 330 (376)
T ss_dssp TCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEE
T ss_pred CCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeE
Confidence 9998876653 23444444 356788888999999999999998887762 22233333333 3457778889999
Q ss_pred EEEECCCCeEEEEecCCCCcEEE-EEEcCCCCEEEEEEcCCeEEEEE
Q 008050 521 KVWSGRDFKLVKSLSGHEAKVTS-LDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 521 ~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
++||..+++.+..+......+.+ .... +..|+.++.+|.|+.|+
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 99999999988877653333322 2222 55788899999999987
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.39 E-value=1.4e-11 Score=124.19 Aligned_cols=266 Identities=14% Similarity=0.019 Sum_probs=182.5
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 367 (579)
.+.++.+..+|. |++++.+ |..||. +++.+..+..+........+. +..|++++.++.|..+|..++....+..
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~~~ 134 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRFKT 134 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEEEC
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEEcC
Confidence 345666666665 4445444 888885 555443333222222333333 5678888889999999977776666665
Q ss_pred ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 368 h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
....+.++...+++. +++++.++.|..||.. ++....+......+.++.+..++.+++ ++ +.|..|| .+++...
T Consensus 135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE
T ss_pred CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE
Confidence 655666777776665 6678888999999998 777666655556677778877886554 44 8899999 7888777
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
.+......+.++.+.++|. |.+++.++.|..+|. +++.+..+......+..+.+..+ + .|..++.+|.|..+|. +
T Consensus 209 ~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-g-~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 209 NFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNT-D-TIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp EECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTT-S-CEEEECTTCEEEEECT-T
T ss_pred EEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCC-C-eEEEecCCCCEEEECC-C
Confidence 7776666788888988875 566777888999984 67777776665554555556543 3 4666788889999995 6
Q ss_pred CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 528 FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
++.+..+......+.++....+|. |+.++.+|.+++.......
T Consensus 284 g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 284 GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 777777665556677777777775 6678899999998876544
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.36 E-value=1.7e-11 Score=126.29 Aligned_cols=255 Identities=10% Similarity=-0.046 Sum_probs=172.5
Q ss_pred eEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEeCC-CCeeEEEecc-------cC
Q 008050 309 VVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS----------ADRTARLWNTD-GSLLNTFQGH-------LD 370 (579)
Q Consensus 309 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s----------~dg~I~iwd~~-~~~~~~~~~h-------~~ 370 (579)
.|.++|..+++.+.++.....+ .+.++|++++++++. .++.|.+||.. .+.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8899999999999998765556 799999999998886 36889999954 4666666533 13
Q ss_pred CeEEEEEecCCCEEEEEeC--CCeEEE--EECCCCcEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---
Q 008050 371 RLARMAFHPSGKYLGTTSF--DKTWRL--WDVDTGVELLLQEGHSRSVYGIAFHPDG-SLAASCGLDALARVWDLRT--- 442 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s~--dg~I~l--wd~~~~~~~~~~~~~~~~V~~l~~spdg-~~l~sg~~dg~I~iwd~~~--- 442 (579)
....+.|+|+|++++++.. +..+.+ +|..+ +..... .+. +.+.|++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 4568999999999999875 467888 99877 222221 111 1223443 3555666788888888876
Q ss_pred --CeEEEE----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEeCC----------CCCeEEEEEe
Q 008050 443 --GRSILA----LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK--SLYVIPAH----------SNLISQVKFE 504 (579)
Q Consensus 443 --~~~~~~----~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~--~~~~~~~~----------~~~V~~v~~s 504 (579)
++.... +.....+. . ++++..++..+. +.|.+.|+.... .+..+... ......+.++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 332211 11122333 3 555555555556 899999986532 22222111 0111226799
Q ss_pred eCCCeEEEEEE---C-----CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCE-EEEEE-cCCeEEEEEcCCCCccc
Q 008050 505 PQEGYFLVTGS---Y-----DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQS-IATVS-HDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 505 p~~~~~l~sgs---~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~-L~s~s-~Dg~I~iW~~~~~~~~~ 574 (579)
++++.++++.. . ++.+.+||+.+++.+..+.... ...++.|++||++ +++.. .++.|.++|+.+.+...
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 98666665544 2 2356699999999998886443 5889999999985 56666 59999999999988877
Q ss_pred cccC
Q 008050 575 AMDV 578 (579)
Q Consensus 575 ~~~~ 578 (579)
.+.+
T Consensus 352 ~I~v 355 (368)
T 1mda_H 352 SVEL 355 (368)
T ss_dssp ECCC
T ss_pred EEEC
Confidence 7653
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.35 E-value=2.8e-10 Score=127.08 Aligned_cols=269 Identities=10% Similarity=0.041 Sum_probs=186.3
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCC-C----CCeEE-EEEccCCCEEEEEeC------CCcEEEEeC-CCCeeE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGH-T----ERATD-VTFSPVSNHVATSSA------DRTARLWNT-DGSLLN 363 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h-~----~~V~~-l~~sp~~~~l~s~s~------dg~I~iwd~-~~~~~~ 363 (579)
++..|++++.|+.|..+|..+++.+..+..+ . ..+.+ ... .+..+++++. +|.|+.||. +++.+.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4678888999999999999999999888765 2 11211 111 2355555543 689999995 567666
Q ss_pred EEecccCC--------------------------------eEEEEEecCCCEEEEEeCCC-------------------e
Q 008050 364 TFQGHLDR--------------------------------LARMAFHPSGKYLGTTSFDK-------------------T 392 (579)
Q Consensus 364 ~~~~h~~~--------------------------------I~~l~~sp~~~~l~s~s~dg-------------------~ 392 (579)
.+...... ...+.+++++..+++++.++ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 66532211 13578889899888887664 5
Q ss_pred EEEEECCCCcEEEEEec--CC-------CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCeEEEEEecCCC------
Q 008050 393 WRLWDVDTGVELLLQEG--HS-------RSVYGIAFHPDG---SLAASCGLDALARVWDLRTGRSILALEGHVK------ 454 (579)
Q Consensus 393 I~lwd~~~~~~~~~~~~--~~-------~~V~~l~~spdg---~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~------ 454 (579)
|..+|..+|+.+..+.. |. .....+....+| ..++.++.+|.++++|..+|+.+..+.....
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 99999999998887653 21 122233444467 6889999999999999999999877653210
Q ss_pred -----Ce------------------------EEEEEcCCCCEEEEEeCC-------------------------------
Q 008050 455 -----PV------------------------LGISFSPNGYHLATGGED------------------------------- 474 (579)
Q Consensus 455 -----~I------------------------~si~~sp~g~~l~tgs~D------------------------------- 474 (579)
++ ..++|+|++.++++...+
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 11 146888988888776432
Q ss_pred ------------CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC-CcE
Q 008050 475 ------------NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE-AKV 541 (579)
Q Consensus 475 ------------g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~-~~V 541 (579)
|.|..||+.+++.+..+... ..+....+... +.+++.++.||.+++||..+++.+..+.... ...
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~-g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTA-GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeC-CCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 78999999999999888653 23334445555 4567778999999999999999999886433 222
Q ss_pred EEEEEcCCCCEEEEE-Ec----------------CCeEEEEEcCC
Q 008050 542 TSLDIHPDEQSIATV-SH----------------DRWIKLWSTRN 569 (579)
Q Consensus 542 ~~l~~s~dg~~L~s~-s~----------------Dg~I~iW~~~~ 569 (579)
.-+.|..+|+.++.. +. .+.+..|.+..
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 344566778754433 22 36788888864
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.33 E-value=1.3e-11 Score=124.64 Aligned_cols=263 Identities=12% Similarity=0.013 Sum_probs=179.4
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCC
Q 008050 292 CSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDR 371 (579)
Q Consensus 292 ~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~ 371 (579)
..+..+| .|++++.++.|..|| .+++....+..+...+.++....++. |+.++.+ |..||.+++.+..+......
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTKKAI 99 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC----
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECCCCcEEEEEECCCCc
Confidence 3444455 466677888999999 88887665554444556777766655 5555544 88888765544333322222
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEec
Q 008050 372 LARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEG 451 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 451 (579)
.....+. +..+++++.++.|..||.. ++...........+.++...+++. ++.++.++.|..||.. ++....+..
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence 2333343 5578888889999999998 777666655555566777777776 5567788999999998 887777776
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE
Q 008050 452 HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 452 ~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
....+.++.+..+|.++ +++ +.|..|| .+++.+..+......+.++...++ +. |..++.++.|..+| .+++.+
T Consensus 175 ~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~-g~-l~v~t~~~gl~~~~-~~g~~~ 247 (330)
T 3hxj_A 175 NDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISED-GT-IYVTSLDGHLYAIN-PDGTEK 247 (330)
T ss_dssp SSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTT-SC-EEEEETTTEEEEEC-TTSCEE
T ss_pred CCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCC-Ce-EEEEcCCCeEEEEC-CCCCEe
Confidence 66667788887788644 444 7899999 788888777766667888888764 43 55567788899997 456666
Q ss_pred EEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 532 KSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 532 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
..+......+.++.+..++ .|+.++.+|.|..++. +++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred EEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 6665444444556666555 5777888888999985 44433
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.33 E-value=1.5e-10 Score=121.23 Aligned_cols=239 Identities=9% Similarity=0.041 Sum_probs=168.5
Q ss_pred EEEEcCCCCEEEEEe----------cCCeEEEEeCCCCeeEEEEeCC-------CCCeEEEEEccCCCEEEEEeC--CCc
Q 008050 291 GCSYSHDGNLLATSS----------LSGVVKIWSMPRLQKFSALKGH-------TERATDVTFSPVSNHVATSSA--DRT 351 (579)
Q Consensus 291 ~~~~spdg~~latgs----------~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp~~~~l~s~s~--dg~ 351 (579)
.++++|||++|+++. .++.|.++|..+++.+..+.-. ......+.|+|+|++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 899999999998886 3678999999999998887532 234567899999999999874 578
Q ss_pred EEEEeCCC-CeeEEEecccCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEE----ecCCCCe-EEEEEcCCCC
Q 008050 352 ARLWNTDG-SLLNTFQGHLDRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQ----EGHSRSV-YGIAFHPDGS 424 (579)
Q Consensus 352 I~iwd~~~-~~~~~~~~h~~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~----~~~~~~V-~~l~~spdg~ 424 (579)
|.+.|... +.+..+.... +....|++ ..+++.+.||.+.+.++.+++..... ......+ ..+.|.+++.
T Consensus 202 VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 99999765 4444544321 12333433 56667778888888888655544321 1111111 1356788888
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEE--EEec----------CCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEC
Q 008050 425 LAASCGLDALARVWDLRTGRSIL--ALEG----------HVKPVLGISFSPNGYHLATGGE----------DNTCRIWDL 482 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~--~~~~----------~~~~I~si~~sp~g~~l~tgs~----------Dg~I~iwDl 482 (579)
.++.....+.+.+.|+..+.... .+.. .......+++++++..+++... ++.|.++|+
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 77777888999999987654221 1110 0111223689999888777642 357999999
Q ss_pred CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEe
Q 008050 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l 534 (579)
.+++.+..+.... ....+.|++++..++++.. .++.|.++|..+++.+.++
T Consensus 358 ~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 358 ETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999887532 4788999998552666666 5999999999999999887
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.32 E-value=5.6e-10 Score=124.94 Aligned_cols=256 Identities=14% Similarity=0.117 Sum_probs=173.4
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCC--CCCeEEEEEcc--CCCEEEEEe------CCCcEEEEeC-CCCeeEEE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGH--TERATDVTFSP--VSNHVATSS------ADRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~sp--~~~~l~s~s------~dg~I~iwd~-~~~~~~~~ 365 (579)
++..|++++.||.|+.||..+++.+..+... ......+..+| .+..+++++ .+|.|..||. +++.+..+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 3568888999999999999999999887642 11111111112 134454443 3689999995 56666665
Q ss_pred eccc-------------------------------CCeEEEEEecCCCEEEEEeCCCe-------------------EEE
Q 008050 366 QGHL-------------------------------DRLARMAFHPSGKYLGTTSFDKT-------------------WRL 395 (579)
Q Consensus 366 ~~h~-------------------------------~~I~~l~~sp~~~~l~s~s~dg~-------------------I~l 395 (579)
.... .....+.+.+++..+++++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 01125788888889999888764 999
Q ss_pred EECCCCcEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCCC---------
Q 008050 396 WDVDTGVELLLQEG--HS-------RSVYGIAFHPDGS---LAASCGLDALARVWDLRTGRSILALEGHVK--------- 454 (579)
Q Consensus 396 wd~~~~~~~~~~~~--~~-------~~V~~l~~spdg~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--------- 454 (579)
||..+|+.+..+.. |. ..........+|. .++.++.+|.++++|.++|+.+........
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999999887754 21 1222223333565 788999999999999999998754321110
Q ss_pred ------------------------------CeEEEEEcCCCCEEEEEeC-------------------------------
Q 008050 455 ------------------------------PVLGISFSPNGYHLATGGE------------------------------- 473 (579)
Q Consensus 455 ------------------------------~I~si~~sp~g~~l~tgs~------------------------------- 473 (579)
.-..++|+|+..+|++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 0112688888777777532
Q ss_pred --------------CCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCC
Q 008050 474 --------------DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEA 539 (579)
Q Consensus 474 --------------Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~ 539 (579)
+|.|..||+.+++.+..+..+... ..-.+... +.+++.|+.||.|+.||.++++.+.++....+
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~ta-gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTA-GNLVFEGSADGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCccceEC-CCEEEEECCCCcEEEEECCCCccceeeeCCCC
Confidence 377999999999999988765432 22344554 56788889999999999999999988865432
Q ss_pred c-EEEEEEcCCCCEEE
Q 008050 540 K-VTSLDIHPDEQSIA 554 (579)
Q Consensus 540 ~-V~~l~~s~dg~~L~ 554 (579)
. ..-+.|..+|+..+
T Consensus 518 ~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 518 VMAAPVTYSVDGEQYV 533 (689)
T ss_dssp CCSCCEEEEETTEEEE
T ss_pred cccCceEEEECCEEEE
Confidence 2 23455677887543
No 231
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=7.1e-10 Score=123.71 Aligned_cols=276 Identities=10% Similarity=0.003 Sum_probs=187.1
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCC----------e-EEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTER----------A-TDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~----------V-~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~ 365 (579)
+..|++++.++.|+-+|..+++.+..+...... + ..+.+ .+..+++++.|+.|..+|. +++.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 667788888999999999999999887643221 0 11222 2567888999999999994 67777666
Q ss_pred eccc----CCeEE-EEEecCCCEEEEEeC------CCeEEEEECCCCcEEEEEecCC-----------------------
Q 008050 366 QGHL----DRLAR-MAFHPSGKYLGTTSF------DKTWRLWDVDTGVELLLQEGHS----------------------- 411 (579)
Q Consensus 366 ~~h~----~~I~~-l~~sp~~~~l~s~s~------dg~I~lwd~~~~~~~~~~~~~~----------------------- 411 (579)
.... ..+.+ ..+. +..+++++. +|.|+.||..+|+.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 1111 335555543 5899999999999988765211
Q ss_pred --------CCeEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCeEEEEEecC--C-------CC
Q 008050 412 --------RSVYGIAFHPDGSLAASCGLDA-------------------LARVWDLRTGRSILALEGH--V-------KP 455 (579)
Q Consensus 412 --------~~V~~l~~spdg~~l~sg~~dg-------------------~I~iwd~~~~~~~~~~~~~--~-------~~ 455 (579)
.....+++.+++.+++.++.++ .|..+|.++|+.+..++.. . .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112467888888888887766 4999999999999888642 1 23
Q ss_pred eEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeCCCC------------C-----------------------
Q 008050 456 VLGISFSPNGY---HLATGGEDNTCRIWDLRKRKSLYVIPAHSN------------L----------------------- 497 (579)
Q Consensus 456 I~si~~sp~g~---~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~------------~----------------------- 497 (579)
.....+..+|+ .++.++.+|.++++|..+++.+..+..... .
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 33333334665 688899999999999999998854432210 0
Q ss_pred -eEEEEEeeCCCeEEEEE-----------------------------------ECCCEEEEEECCCCeEEEEecCCCCcE
Q 008050 498 -ISQVKFEPQEGYFLVTG-----------------------------------SYDMTVKVWSGRDFKLVKSLSGHEAKV 541 (579)
Q Consensus 498 -V~~v~~sp~~~~~l~sg-----------------------------------s~dg~I~iwd~~~~~~~~~l~~h~~~V 541 (579)
-..++++|+.+.+++.. ..+|.|..||..+++.+..+..+. .+
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HW 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CC
Confidence 01256777655444321 134889999999999887775433 23
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 542 TSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 542 ~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
....+...+.+|++++.||.|+.||..+++....+++
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 3334445678899999999999999999988776643
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.26 E-value=2.1e-12 Score=133.72 Aligned_cols=257 Identities=11% Similarity=-0.021 Sum_probs=145.8
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEecccCC-eE-
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQGHLDR-LA- 373 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~h~~~-I~- 373 (579)
++..+++++.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.||.|+.||. +++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578999999999999999999999988876 55666666667778888889999999996 55655554433211 10
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC
Q 008050 374 RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV 453 (579)
Q Consensus 374 ~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~ 453 (579)
...+. .+..+++++.++.|+.||..+|+.+..+..+. ...++|++..+++++.++.|+.||.++|+.+..+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34578888899999999999998887765443 23456678899999999999999999998776654321
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEE----EEEECCCEEEEEECC
Q 008050 454 KPVLGISFSPNG---YHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFL----VTGSYDMTVKVWSGR 526 (579)
Q Consensus 454 ~~I~si~~sp~g---~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l----~sgs~dg~I~iwd~~ 526 (579)
.....+..+. ..+++++.||.|+.||.++++.+..+......+....++.+ +.+. +.+ ++.++.+|..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~d-g~~~v~~~~~~--~~~l~~ld~~ 235 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQRE-GLRKVMHINVA--VETLRYLTFM 235 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTS-SCEEECCEEEE--HHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCC-ceEeccceeec--ccceeeeehh
Confidence 1223333322 46778889999999999999998888754333332333333 3221 111 3345555555
Q ss_pred CCe----EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 527 DFK----LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 527 ~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
+++ .+..+... +.+.+.. -.+..|+.++.||.|+.++..
T Consensus 236 tG~~~~~~~W~~~~~-~~~~sp~--~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 236 SGEVGRITKWKYPFP-KETEAKS--KLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHTSCCCCC-CHHHHHH--HSEEEECBEECSSCEECCEEE
T ss_pred cCCcccceeeeeccC-ccccccc--cccceEEEecccCCEEecCcc
Confidence 554 33222211 1111000 124567778888888888765
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.26 E-value=2.1e-08 Score=98.25 Aligned_cols=249 Identities=12% Similarity=0.016 Sum_probs=162.1
Q ss_pred CEEEEEecCCeEEEEeCCCCee-----EEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEe-cccCC
Q 008050 299 NLLATSSLSGVVKIWSMPRLQK-----FSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDGSLLNTFQ-GHLDR 371 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~~-----~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~-~h~~~ 371 (579)
.+|+.+.. +.|+.+++..... ...+......+.+++|++++..|+.+. .++.|..++.++.....+. .....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555553 4788888765432 111222224578999999766665554 5689999998876544443 23356
Q ss_pred eEEEEEecCCCEEEEE-eCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCeEEE
Q 008050 372 LARMAFHPSGKYLGTT-SFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL---DALARVWDLRTGRSIL 447 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~-s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~---dg~I~iwd~~~~~~~~ 447 (579)
...+++++++..|+.+ ...+.|.++++..................+++++++..|+.+.. .+.|..+++.......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 7899999976655555 45689999998755433333222356789999996555555543 4688888876433222
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
...........+++++++..|+.+. ..+.|.++|+........+.. ......+++. ++.++++...++.|.++|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 2223334578999999876665554 567999999875443333333 2334566654 46777766677999999999
Q ss_pred CCeEEEEecCCC-CcEEEEEEcCCCC
Q 008050 527 DFKLVKSLSGHE-AKVTSLDIHPDEQ 551 (579)
Q Consensus 527 ~~~~~~~l~~h~-~~V~~l~~s~dg~ 551 (579)
+++.+..+.... .....+++.|++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 999988886433 2467788888764
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=1e-10 Score=120.36 Aligned_cols=244 Identities=10% Similarity=-0.028 Sum_probs=167.4
Q ss_pred EEEEcCCCCEEEEEe----------cCCeEEEEeCCCCeeEEEEeCC-------CCCeEEEEEccCCCEEEEEeC--CCc
Q 008050 291 GCSYSHDGNLLATSS----------LSGVVKIWSMPRLQKFSALKGH-------TERATDVTFSPVSNHVATSSA--DRT 351 (579)
Q Consensus 291 ~~~~spdg~~latgs----------~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp~~~~l~s~s~--dg~ 351 (579)
.+.|+|||++++++. .++.|.+||..+++.+.++..+ ......+.|+|+|++++++.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999886 3688999999999999998643 134678999999999998875 467
Q ss_pred EEE--EeCCCCeeEEEecccCCeEEEEEecCCC-EEEEEeCCCeEEEEECCC-----CcEEEE----EecCCCCeEEEEE
Q 008050 352 ARL--WNTDGSLLNTFQGHLDRLARMAFHPSGK-YLGTTSFDKTWRLWDVDT-----GVELLL----QEGHSRSVYGIAF 419 (579)
Q Consensus 352 I~i--wd~~~~~~~~~~~h~~~I~~l~~sp~~~-~l~s~s~dg~I~lwd~~~-----~~~~~~----~~~~~~~V~~l~~ 419 (579)
|.+ +|... +..+... +. +.+.|+++ .+++.+.||.+.+.|+.+ ++.... +.-...+. .
T Consensus 149 v~V~~iD~~t--v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~- 218 (368)
T 1mda_H 149 AGLSVPGASD--DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q- 218 (368)
T ss_dssp EEEEETTTEE--EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-
T ss_pred EEEEEEchhh--ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-
Confidence 888 88655 3444321 11 12334443 455667788888888876 332210 11112232 3
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCe--EEEEEecC----------CCCeEEEEEcCCCCEEEEEeC---------CCcEE
Q 008050 420 HPDGSLAASCGLDALARVWDLRTGR--SILALEGH----------VKPVLGISFSPNGYHLATGGE---------DNTCR 478 (579)
Q Consensus 420 spdg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~----------~~~I~si~~sp~g~~l~tgs~---------Dg~I~ 478 (579)
.+++..++..+. +.+.+.|+.++. .+..+... ......+.|+++++.++++.. ++.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 555666666666 999999986543 22222110 011122689999988887643 23566
Q ss_pred EEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEE-CCCEEEEEECCCCeEEEEecCCCCcEEEEEEc
Q 008050 479 IWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGS-YDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 479 iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
+||+.+++.+..+.... ....+.|++++..++++.. .++.|.++|+.+++.+.++..... ...+++.
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 99999999988887643 5788999998666778887 699999999999999999975543 4455554
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=4.4e-12 Score=131.30 Aligned_cols=203 Identities=14% Similarity=0.027 Sum_probs=117.6
Q ss_pred CCCEEEEEeCCCcEEEEe-CCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC-eE-
Q 008050 339 VSNHVATSSADRTARLWN-TDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRS-VY- 415 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd-~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~-V~- 415 (579)
++..+++++.||.|+.|| .+++.+..+.. +.+.+..+..++..+++++.||.|+.||..+++.+.....+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 468899999999999999 56777777765 55555556667778888889999999999988776554322110 00
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC
Q 008050 416 GIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS 495 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~ 495 (579)
+..+. ++..+++|+.++.|+.||..+|+.+..+..+. ...++|++..|++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 00111 34467788889999999999999988776553 23456688899999999999999999998877664321
Q ss_pred CCeEEEEEeeCC--CeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEE-EEEcCCCC
Q 008050 496 NLISQVKFEPQE--GYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTS-LDIHPDEQ 551 (579)
Q Consensus 496 ~~V~~v~~sp~~--~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~ 551 (579)
.....+..+. ...+++++.||.|+.||..+++.+..+.. .+++.. ..++.+|.
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 1122233211 13566788999999999999998887763 344443 44555664
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.17 E-value=4e-08 Score=96.22 Aligned_cols=231 Identities=9% Similarity=-0.006 Sum_probs=149.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeE------EEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCC
Q 008050 341 NHVATSSADRTARLWNTDGSLLN------TFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRS 413 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~~~~~~~------~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~ 413 (579)
.+|+.+.. +.|+.+++++.... .+......+..++|++++..|+.+. .++.|..+++..+............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555443 47888887664321 2222234568999999766666554 5689999999876544443333357
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeE
Q 008050 414 VYGIAFHPDGS-LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE---DNTCRIWDLRKRKSLY 489 (579)
Q Consensus 414 V~~l~~spdg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~---Dg~I~iwDl~~~~~~~ 489 (579)
..++++++++. ++++....+.|.++++..................+++++++..|+.+.. .+.|..+++.. ....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcE
Confidence 88999999755 4455556789999998754332223222245789999996556555553 46898998754 3333
Q ss_pred EE-eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE-cCCeEEEEEc
Q 008050 490 VI-PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS-HDRWIKLWST 567 (579)
Q Consensus 490 ~~-~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~ 567 (579)
.+ .........++++++++.++++....+.|.++|.........+.. ......+++. +..|+.+. .++.|.+++.
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 33 233356788999997677777777789999999876544433333 2335677665 45555555 5689999999
Q ss_pred CCCCccccc
Q 008050 568 RNKGDEHAM 576 (579)
Q Consensus 568 ~~~~~~~~~ 576 (579)
.+++....+
T Consensus 237 ~~g~~~~~i 245 (267)
T 1npe_A 237 AISKEMDTF 245 (267)
T ss_dssp TTTEEEEEE
T ss_pred CCCCceEEE
Confidence 877665544
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=3.9e-09 Score=113.22 Aligned_cols=267 Identities=13% Similarity=0.097 Sum_probs=183.8
Q ss_pred EEEEecCCeEEEEeCCCCeeEEEEeCC---------------------------------------CCCeEEEEEcc---
Q 008050 301 LATSSLSGVVKIWSMPRLQKFSALKGH---------------------------------------TERATDVTFSP--- 338 (579)
Q Consensus 301 latgs~dg~I~iwd~~~~~~~~~l~~h---------------------------------------~~~V~~l~~sp--- 338 (579)
+.+|+..|.++|+-+.+++.+..+.-. .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 567888999999988887776655310 12223345554
Q ss_pred --CCCEEEEEeC-CCcEEEEeCCCCe-eEEEec-ccCCeEEEEE-e-cCCCEEEEEe------------------CCCeE
Q 008050 339 --VSNHVATSSA-DRTARLWNTDGSL-LNTFQG-HLDRLARMAF-H-PSGKYLGTTS------------------FDKTW 393 (579)
Q Consensus 339 --~~~~l~s~s~-dg~I~iwd~~~~~-~~~~~~-h~~~I~~l~~-s-p~~~~l~s~s------------------~dg~I 393 (579)
||++++++.. ++.|.+.|+.... ...+.- .......+.+ + |++.++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7788777665 4579999977744 333322 2345778887 5 8999999885 34689
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------eE
Q 008050 394 RLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDA--------------------------------------LA 435 (579)
Q Consensus 394 ~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg--------------------------------------~I 435 (579)
.++|..+.+......-.. ....++++++|+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999988777654322 345678999999998888553 36
Q ss_pred EEEeCCC--CeE-EEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eeEEEeCCCCCeE
Q 008050 436 RVWDLRT--GRS-ILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRK------------SLYVIPAHSNLIS 499 (579)
Q Consensus 436 ~iwd~~~--~~~-~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~------------~~~~~~~~~~~V~ 499 (579)
.+.|.++ ++. +..+... ....++.++|||+++++++ .+++|.++|+.+.+ .+..+... ....
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCEE
T ss_pred EEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCcc
Confidence 6777776 444 4444332 2457899999999887776 67899999998653 33344333 3467
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCC----------CeEEEEecCCCCcE-----EEEEEcCCCCEEEEEEc---CCe
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRD----------FKLVKSLSGHEAKV-----TSLDIHPDEQSIATVSH---DRW 561 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~s~dg~~L~s~s~---Dg~ 561 (579)
.++|++++ +..++...|+.|.+||+.. .+.+.++..|-.+- .++.+++||++|+++.. |+.
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 79999984 6666677799999999876 66788887765432 12245799999998863 442
Q ss_pred ----------EEEEEcCCCC
Q 008050 562 ----------IKLWSTRNKG 571 (579)
Q Consensus 562 ----------I~iW~~~~~~ 571 (579)
-.++|+..++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSS
T ss_pred ccCCCCCCCcceEEEcCCCc
Confidence 1889985444
No 238
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=75.31 Aligned_cols=31 Identities=61% Similarity=1.012 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCeEecCCchhhhhHHHHHHH
Q 008050 152 AVRARLRRLGEPITFFGEREMERRDRLRMLM 182 (579)
Q Consensus 152 ~v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l 182 (579)
+|+++||+||||||||||++.+||+||+++|
T Consensus 1 eV~~~LR~lgePi~lFGE~~~~Rr~RLr~ll 31 (31)
T 1mzw_B 1 EVKASLRALGEPITLFGEGPAERRERLRNIL 31 (31)
T ss_dssp CHHHHHHHTTCCSEETTCCHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCCeeecCCChHHHHHHHHHhC
Confidence 3899999999999999999999999999874
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=6.1e-08 Score=100.59 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=149.4
Q ss_pred cCCCEEEE-EeCCCcEEEEeCCC-----CeeEEEe------c-ccCCeEEEEEecCCCEEEEEeCC------CeEEEEEC
Q 008050 338 PVSNHVAT-SSADRTARLWNTDG-----SLLNTFQ------G-HLDRLARMAFHPSGKYLGTTSFD------KTWRLWDV 398 (579)
Q Consensus 338 p~~~~l~s-~s~dg~I~iwd~~~-----~~~~~~~------~-h~~~I~~l~~sp~~~~l~s~s~d------g~I~lwd~ 398 (579)
.++++|++ +..++.|.++|... +....+. . ....-..+.+.|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77777665 45578999999643 2334442 0 11234567788999 66665555 78999999
Q ss_pred CCCcEEEEEecCC---CCeEEEEEcCCCCEEEEEe-------------------CCCeEEEEeCCCCeEEEEEecC-C-C
Q 008050 399 DTGVELLLQEGHS---RSVYGIAFHPDGSLAASCG-------------------LDALARVWDLRTGRSILALEGH-V-K 454 (579)
Q Consensus 399 ~~~~~~~~~~~~~---~~V~~l~~spdg~~l~sg~-------------------~dg~I~iwd~~~~~~~~~~~~~-~-~ 454 (579)
.+++.+....... .--+.+.|+|+++.+++.. ....|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 9999888775222 2245688999999888874 3789999999999888887653 1 2
Q ss_pred CeEEEEE--cCCCCEEEEEeC------CCcEEEEECCCCce--eEEE--eCC----------------CCCeEEEEEeeC
Q 008050 455 PVLGISF--SPNGYHLATGGE------DNTCRIWDLRKRKS--LYVI--PAH----------------SNLISQVKFEPQ 506 (579)
Q Consensus 455 ~I~si~~--sp~g~~l~tgs~------Dg~I~iwDl~~~~~--~~~~--~~~----------------~~~V~~v~~sp~ 506 (579)
....|.| +|+|+++++++. +++|.+|....+.. ...+ ... ......+.++++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 999999888874 56887776544321 1111 110 245678999998
Q ss_pred CCeEEEEEECCCEEEEEECC---CCeEEEEecCCC--------------CcEEEEEEcCCCCEEEEEE
Q 008050 507 EGYFLVTGSYDMTVKVWSGR---DFKLVKSLSGHE--------------AKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~---~~~~~~~l~~h~--------------~~V~~l~~s~dg~~L~s~s 557 (579)
+..+.++.-..+.|.+||+. +.+++..+.... +.-..+.+++||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 55555555558999999985 346666654321 1357899999999999888
No 240
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=99.15 E-value=2.5e-11 Score=90.93 Aligned_cols=39 Identities=36% Similarity=0.575 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHhcCCCeEecCCchhhhhHHHHHHHH
Q 008050 145 AVPTNDMAVRARLRRLGEPITFFGEREMERRDRLRMLMA 183 (579)
Q Consensus 145 ~~~~~d~~v~~~l~~l~~p~~~~~e~~~~~R~rlr~~l~ 183 (579)
.+|+.|.+|+++||+||||||||||+..+||+|||+++.
T Consensus 24 ~v~~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~RLr~l~~ 62 (76)
T 2dk4_A 24 PMTLSRQEVIRRLRERGEPIRLFGETDYDAFQRLRKIEI 62 (76)
T ss_dssp SCCSCHHHHHHHHHHHTCCSSCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCeeecCCChHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999987
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.11 E-value=2.5e-08 Score=109.08 Aligned_cols=275 Identities=9% Similarity=-0.002 Sum_probs=180.4
Q ss_pred CCEEEEEec-CCeEEEEeC-CCCeeEEEEeCCCCC-e----------EEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeE
Q 008050 298 GNLLATSSL-SGVVKIWSM-PRLQKFSALKGHTER-A----------TDVTFSPVSNHVATSSADRTARLWNT-DGSLLN 363 (579)
Q Consensus 298 g~~latgs~-dg~I~iwd~-~~~~~~~~l~~h~~~-V----------~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~ 363 (579)
+..+++++. ++.|.-+|. .+++.+..+...... + ..+.. .+..+++++.|+.|..+|. +++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 566777777 899999999 899998887533210 0 11222 3577888889999999995 566666
Q ss_pred EEecccC----CeEE-EEEecCCCEEEEEeC------CCeEEEEECCCCcEEEEEecCCCC-------------------
Q 008050 364 TFQGHLD----RLAR-MAFHPSGKYLGTTSF------DKTWRLWDVDTGVELLLQEGHSRS------------------- 413 (579)
Q Consensus 364 ~~~~h~~----~I~~-l~~sp~~~~l~s~s~------dg~I~lwd~~~~~~~~~~~~~~~~------------------- 413 (579)
.+..... .+.+ ..+. +..+++++. ++.|+.+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 5543210 1211 1112 345666654 799999999999988766532110
Q ss_pred ------------------e-EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCeEEEEEecCC-----
Q 008050 414 ------------------V-YGIAFHPDGSLAASCGLD----------------ALARVWDLRTGRSILALEGHV----- 453 (579)
Q Consensus 414 ------------------V-~~l~~spdg~~l~sg~~d----------------g~I~iwd~~~~~~~~~~~~~~----- 453 (579)
+ ..+++.++...++.++.+ +.|..+|.++|+.+..++...
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0 135666666666666532 369999999999988876321
Q ss_pred -----CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeCCC-------------CCe--------------
Q 008050 454 -----KPVLGISFSPNGY---HLATGGEDNTCRIWDLRKRKSLYVIPAHS-------------NLI-------------- 498 (579)
Q Consensus 454 -----~~I~si~~sp~g~---~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-------------~~V-------------- 498 (579)
.++ -+....+|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 298 ~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 222 122224673 57788899999999999999888765422 011
Q ss_pred ------------EEEEEeeCCCeEEEEEE------------------------------------CCCEEEEEECCCCeE
Q 008050 499 ------------SQVKFEPQEGYFLVTGS------------------------------------YDMTVKVWSGRDFKL 530 (579)
Q Consensus 499 ------------~~v~~sp~~~~~l~sgs------------------------------------~dg~I~iwd~~~~~~ 530 (579)
..++++|+.+.+++... .+|.|..||..+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 23567776554444321 357899999999998
Q ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 531 VKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 531 ~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+.++... ..+.+..+...+..++.++.||.|+.||..+++....+++
T Consensus 457 ~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 457 KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 8777532 2222222333466788899999999999999998876654
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.10 E-value=4.2e-08 Score=107.43 Aligned_cols=277 Identities=10% Similarity=0.013 Sum_probs=180.2
Q ss_pred CCEEEEEec-CCeEEEEeC-CCCeeEEEEeCCCCC-----------eEEEEEccCCCE----EEEEeCCCcEEEEeC-CC
Q 008050 298 GNLLATSSL-SGVVKIWSM-PRLQKFSALKGHTER-----------ATDVTFSPVSNH----VATSSADRTARLWNT-DG 359 (579)
Q Consensus 298 g~~latgs~-dg~I~iwd~-~~~~~~~~l~~h~~~-----------V~~l~~sp~~~~----l~s~s~dg~I~iwd~-~~ 359 (579)
+..|++++. ++.|.-+|. .+++.+..+...... ...+.++|.+.. |++++.|+.|.-+|. ++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 566777777 899999999 899999887643221 123455443444 888889999999995 66
Q ss_pred CeeEEEecccC----CeEE-EEEecCCCEEEEEe------CCCeEEEEECCCCcEEEEEecCCCC---------------
Q 008050 360 SLLNTFQGHLD----RLAR-MAFHPSGKYLGTTS------FDKTWRLWDVDTGVELLLQEGHSRS--------------- 413 (579)
Q Consensus 360 ~~~~~~~~h~~----~I~~-l~~sp~~~~l~s~s------~dg~I~lwd~~~~~~~~~~~~~~~~--------------- 413 (579)
+.+........ .+.+ -.+. ++ .+++++ .+|.|+.+|..+|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 66665543220 1211 1122 34 555555 3899999999999988776532211
Q ss_pred ----------------------e-EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCeEEEEEecCCC
Q 008050 414 ----------------------V-YGIAFHPDGSLAASCGLD----------------ALARVWDLRTGRSILALEGHVK 454 (579)
Q Consensus 414 ----------------------V-~~l~~spdg~~l~sg~~d----------------g~I~iwd~~~~~~~~~~~~~~~ 454 (579)
+ ..+++.++..+++.++.+ +.|..+|.++|+.+..++....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 134566667777777655 3899999999999888764322
Q ss_pred ----------CeEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceeEEEeCCC-------------CCe---------
Q 008050 455 ----------PVLGISFS-PNG---YHLATGGEDNTCRIWDLRKRKSLYVIPAHS-------------NLI--------- 498 (579)
Q Consensus 455 ----------~I~si~~s-p~g---~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-------------~~V--------- 498 (579)
++. +... .+| ..++.++.+|.++++|..+++.+....... .++
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 121 2232 467 567778899999999999999887765321 011
Q ss_pred -----------------EEEEEeeCCCeEEEEE--------------------------------E------CCCEEEEE
Q 008050 499 -----------------SQVKFEPQEGYFLVTG--------------------------------S------YDMTVKVW 523 (579)
Q Consensus 499 -----------------~~v~~sp~~~~~l~sg--------------------------------s------~dg~I~iw 523 (579)
..++++|+.+.+++.. + ..|.|..|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 1345666533332211 1 35789999
Q ss_pred ECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 524 SGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 524 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
|+.+++.+...... .++.+-.+...+.+++.++.||.|+.||..+++.+.++++
T Consensus 459 D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 459 NAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 99999887776421 1121111223467888899999999999999998877654
No 243
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.09 E-value=3.4e-09 Score=108.23 Aligned_cols=225 Identities=10% Similarity=-0.004 Sum_probs=149.8
Q ss_pred CCCCCeeEEEEcCCCCEEEEEec-----CCeEEEEeCCCCeeEEEEeCC------CCCeEEEEEccCCCEE-EEEe---C
Q 008050 284 GDDRPLSGCSYSHDGNLLATSSL-----SGVVKIWSMPRLQKFSALKGH------TERATDVTFSPVSNHV-ATSS---A 348 (579)
Q Consensus 284 gh~~~I~~~~~spdg~~latgs~-----dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~sp~~~~l-~s~s---~ 348 (579)
+|-..+.+++|+++|+++++... ++.|.+||+.+++.+..+... ...+..+++++++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 46678999999999987776654 589999999999877776532 2356899999865555 4444 5
Q ss_pred CCcEEEEeCCC-CeeEEEecccCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 349 DRTARLWNTDG-SLLNTFQGHLDRLA-RMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 349 dg~I~iwd~~~-~~~~~~~~h~~~I~-~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
++.|.+||..+ +....+.+|..... ...+..+|..+.+.+.++.+..|. ..+..|+|+++|+.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999764 44444444322111 134555777777777788776653 246789999999988
Q ss_pred EEEeCCC-eEEEEeCC---CCe-----EE--EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC-C
Q 008050 427 ASCGLDA-LARVWDLR---TGR-----SI--LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA-H 494 (579)
Q Consensus 427 ~sg~~dg-~I~iwd~~---~~~-----~~--~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~-~ 494 (579)
+++...+ .+..++.. .+. .. ....++......++++++|+++++...++.|.+||..+++....... +
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 8877666 55555532 110 00 01112334466799999999999888899999999855654333332 2
Q ss_pred CCCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 495 SNLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 495 ~~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
.....+++|.++ +.++++.+..+.+.+|
T Consensus 290 ~~~p~~va~~~~-g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 LSWTDSFNFGSD-GYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GSCEEEEEECTT-SCEEEEECCGGGSGGG
T ss_pred eecCCeeEECCC-CcEEEEeCcccccccc
Confidence 456889999986 6666666544444333
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.07 E-value=4.7e-08 Score=98.58 Aligned_cols=238 Identities=14% Similarity=0.086 Sum_probs=153.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec--------------------ccCCeEEEEEecCCCEEEEEe
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG--------------------HLDRLARMAFHPSGKYLGTTS 388 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~--------------------h~~~I~~l~~sp~~~~l~s~s 388 (579)
....+++|.+++++++++..++.|..|+..+..+..+.. ....+..+++.+++..|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678899998878888889999999977655544431 123578899997334566666
Q ss_pred CCCeEEEEECCCCcEEEEEe---c-CCCCeEEEEEcC-CCCEEEEEeC-----------------CCeEEEEeCCCCeEE
Q 008050 389 FDKTWRLWDVDTGVELLLQE---G-HSRSVYGIAFHP-DGSLAASCGL-----------------DALARVWDLRTGRSI 446 (579)
Q Consensus 389 ~dg~I~lwd~~~~~~~~~~~---~-~~~~V~~l~~sp-dg~~l~sg~~-----------------dg~I~iwd~~~~~~~ 446 (579)
..+.|..+|..++....... + .......+++.+ +|+++++... +|.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66668889987654322211 1 123578899999 9987776532 367899998777643
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEEeCCCCCeEEEEEeeCCCeEEEEEEC-------
Q 008050 447 LALEGHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLRKRK--SLYVIPAHSNLISQVKFEPQEGYFLVTGSY------- 516 (579)
Q Consensus 447 ~~~~~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~--~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~------- 516 (579)
..... ......|+|+++|++|+++ +..+.|.+|++.... ....+....+ ...++++++ +.++++...
T Consensus 179 ~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~-G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD-GHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT-SCEEEEEEEETTSSTT
T ss_pred EeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC-CCEEEEecCccccccc
Confidence 33222 2335679999999876665 456899999987421 1112211223 788999987 555555433
Q ss_pred ---CCEEEEEECCCCeEEEEecCCC----CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 517 ---DMTVKVWSGRDFKLVKSLSGHE----AKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 517 ---dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.+.|..+|. .++.+..+.... ..++++++. +++++++...++.|..+++..+.
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC----
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccccc
Confidence 467888886 477776665432 346777764 55555555577889999987544
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.06 E-value=2.6e-07 Score=93.14 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=155.9
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-C-------------------CCCeEEEEEccCCCEEEEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-H-------------------TERATDVTFSPVSNHVATS 346 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-h-------------------~~~V~~l~~sp~~~~l~s~ 346 (579)
....+++|+++|++++++..++.|..|+..++... .+.. . .....++++.+++..|+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34567889999998889999999999998765432 2221 0 1357899999744456666
Q ss_pred eCCCcEEEEeCCCCeeEEEecc-----cCCeEEEEEec-CCCEEEEEeC-----------------CCeEEEEECCCCcE
Q 008050 347 SADRTARLWNTDGSLLNTFQGH-----LDRLARMAFHP-SGKYLGTTSF-----------------DKTWRLWDVDTGVE 403 (579)
Q Consensus 347 s~dg~I~iwd~~~~~~~~~~~h-----~~~I~~l~~sp-~~~~l~s~s~-----------------dg~I~lwd~~~~~~ 403 (579)
...+.|..++.++..+..+... ......+++.+ +|+++++... ++.|..||..++..
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5556688888775544443321 23468899999 8876665432 37799999877764
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeC-------
Q 008050 404 LLLQEGHSRSVYGIAFHPDGSLAASC-GLDALARVWDLRTGR--SILALEGHVKPVLGISFSPNGYHLATGGE------- 473 (579)
Q Consensus 404 ~~~~~~~~~~V~~l~~spdg~~l~sg-~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~g~~l~tgs~------- 473 (579)
...... ......++|+++|+.|+.+ +..+.|.+|++.... ....+....+ ...++++++|++.++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 433222 2345679999999866555 566899999987521 1112211223 788999999987666544
Q ss_pred ---CCcEEEEECCCCceeEEEeCCC----CCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 474 ---DNTCRIWDLRKRKSLYVIPAHS----NLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 474 ---Dg~I~iwDl~~~~~~~~~~~~~----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
.+.|..+|. .++.+..+.... ..++.+++. ++.++++...++.|.++++.
T Consensus 256 ~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 256 GRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp SCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred CCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence 467889986 477777776542 346667663 47777776678889999875
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.05 E-value=7.2e-07 Score=101.54 Aligned_cols=275 Identities=5% Similarity=-0.005 Sum_probs=183.5
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-------HTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
...|.++....+|.+. .|+.++-+.+||..+++....... ....|.++....+|.+.+ |+.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 4568888887777654 455554588999877654432221 135699999988877554 5555 58889977
Q ss_pred CCeeEEEec--------ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe------cCCCCeEEEEEcCCCC
Q 008050 359 GSLLNTFQG--------HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE------GHSRSVYGIAFHPDGS 424 (579)
Q Consensus 359 ~~~~~~~~~--------h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~------~~~~~V~~l~~spdg~ 424 (579)
......+.. ....|.++....+|. |.+|+.++.|.+|+..++....... .....|.++....+|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 665555532 235688999888875 6678888889999876654333221 1235699999988886
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEe--------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe----
Q 008050 425 LAASCGLDALARVWDLRTGRSILALE--------GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP---- 492 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~~--------~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~---- 492 (579)
|..|+.++-|..||..+++...... .....|.+++...+|..|.+|+.++-|.+||..+++......
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp -EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred -EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 4457778789999988765433221 123569999999888867778887779999988765433221
Q ss_pred CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC------CCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 493 AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG------HEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 493 ~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
.....|.++...++ +.+. .|+.+| +.+||..+++....... +...|.++...++|.+.+. +.+| |..|+
T Consensus 449 l~~~~v~~i~~d~~-g~lw-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~G-l~~~~ 523 (795)
T 4a2l_A 449 LVNENVYAILPDGE-GNLW-LGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GEEG-LSVFK 523 (795)
T ss_dssp CSCSCEEEEEECSS-SCEE-EEESSC-EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ESSC-EEEEE
T ss_pred cCCCeeEEEEECCC-CCEE-EEecCc-eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eCCc-eEEEe
Confidence 23456888888775 4444 344544 88999887765432211 2356899999988875554 4444 88888
Q ss_pred cCCC
Q 008050 567 TRNK 570 (579)
Q Consensus 567 ~~~~ 570 (579)
..++
T Consensus 524 ~~~~ 527 (795)
T 4a2l_A 524 QEGL 527 (795)
T ss_dssp EETT
T ss_pred CCCC
Confidence 7544
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.03 E-value=2.9e-07 Score=100.68 Aligned_cols=277 Identities=12% Similarity=0.082 Sum_probs=177.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCe---------EEEEEccCCCEEEEEeCCCcEEEEeC-CCCeeEEEec
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERA---------TDVTFSPVSNHVATSSADRTARLWNT-DGSLLNTFQG 367 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V---------~~l~~sp~~~~l~s~s~dg~I~iwd~-~~~~~~~~~~ 367 (579)
+..+++++.++.|.-+|..+++.+..+....... ..+.. .+..+++++.|+.|.-+|. +++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4556666664559999999999998876543210 11222 3567888899999999995 5676666543
Q ss_pred ccC----CeE-EEEEec---CCC-EEEEEe------CCCeEEEEECCCCcEEEEEecCCCCe------------------
Q 008050 368 HLD----RLA-RMAFHP---SGK-YLGTTS------FDKTWRLWDVDTGVELLLQEGHSRSV------------------ 414 (579)
Q Consensus 368 h~~----~I~-~l~~sp---~~~-~l~s~s------~dg~I~lwd~~~~~~~~~~~~~~~~V------------------ 414 (579)
... .+. .-.+.. +|+ .+++++ .++.|+.+|..+|+.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 111121 233 566655 37899999999999887654211000
Q ss_pred -----------------------EEEEEcCCCCEEEEEeC--------------------C----CeEEEEeCCCCeEEE
Q 008050 415 -----------------------YGIAFHPDGSLAASCGL--------------------D----ALARVWDLRTGRSIL 447 (579)
Q Consensus 415 -----------------------~~l~~spdg~~l~sg~~--------------------d----g~I~iwd~~~~~~~~ 447 (579)
..+++.++..+++.+.. | +.|..+|..+|+.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 12456666667776653 2 689999999999998
Q ss_pred EEec--CC--------CCeEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCceeEEEeCCCC--Ce-------------
Q 008050 448 ALEG--HV--------KPVLGISFS-PNGY---HLATGGEDNTCRIWDLRKRKSLYVIPAHSN--LI------------- 498 (579)
Q Consensus 448 ~~~~--~~--------~~I~si~~s-p~g~---~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~--~V------------- 498 (579)
.++. |. .++. +... .+|+ .++.++.+|.++++|..+++.+..+..... ..
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 384 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVER 384 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEEC
T ss_pred EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEc
Confidence 8763 21 1221 2222 4673 788899999999999999998877654320 00
Q ss_pred ------------------------------EEEEEeeCCCeEEEEEE--------------------------------C
Q 008050 499 ------------------------------SQVKFEPQEGYFLVTGS--------------------------------Y 516 (579)
Q Consensus 499 ------------------------------~~v~~sp~~~~~l~sgs--------------------------------~ 516 (579)
..++++|+.+.+++... .
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~ 464 (582)
T 1flg_A 385 EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDH 464 (582)
T ss_dssp TTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSC
T ss_pred cccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCC
Confidence 12355655444433221 2
Q ss_pred CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 517 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+|.|..||+.+++.+.+...+. .+..-.+...+.+++.++.||.|+.||.++++.+..+++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 6889999999999887765322 222211222467888899999999999999998876653
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=1.9e-07 Score=103.97 Aligned_cols=258 Identities=15% Similarity=0.152 Sum_probs=167.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC-CeEEEEEcc--CCCEEEEEeC------CCcEEEEeC-CCCeeEEEec
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTE-RATDVTFSP--VSNHVATSSA------DRTARLWNT-DGSLLNTFQG 367 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~sp--~~~~l~s~s~------dg~I~iwd~-~~~~~~~~~~ 367 (579)
+..|++++.||.|..+|..+++.+..+..... ....+..+| .+..+++++. +|.|..||. +++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 56788888999999999999999988764211 000010111 1345555543 589999995 5677666642
Q ss_pred cc-------------------------------CCeEEEEEecCCCEEEEEeCCC-------------------eEEEEE
Q 008050 368 HL-------------------------------DRLARMAFHPSGKYLGTTSFDK-------------------TWRLWD 397 (579)
Q Consensus 368 h~-------------------------------~~I~~l~~sp~~~~l~s~s~dg-------------------~I~lwd 397 (579)
.. .....+++.+.+..++.++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 10 0112468888888888888776 499999
Q ss_pred CCCCcEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCCC-----------
Q 008050 398 VDTGVELLLQEG--HS-------RSVYGIAFHPDGS---LAASCGLDALARVWDLRTGRSILALEGHVK----------- 454 (579)
Q Consensus 398 ~~~~~~~~~~~~--~~-------~~V~~l~~spdg~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----------- 454 (579)
..+|+.+..+.. |. .......+..+|+ .++.++.+|.++++|..+|+.+........
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 999999887754 21 2233333334665 688999999999999999998854432210
Q ss_pred -C------------------------eEEEEEcCCCCEEEEEe------------------------------------C
Q 008050 455 -P------------------------VLGISFSPNGYHLATGG------------------------------------E 473 (579)
Q Consensus 455 -~------------------------I~si~~sp~g~~l~tgs------------------------------------~ 473 (579)
+ -..++++|+...+++.. .
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 0 01257777666655421 2
Q ss_pred CCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcE-EEEEEcCCCC-
Q 008050 474 DNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKV-TSLDIHPDEQ- 551 (579)
Q Consensus 474 Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~- 551 (579)
+|.|..||+.+++.+..+..+.. .....+... +.+++.++.||.++.||..+++.+..+....... .-+.+..+|+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~-gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTA-GNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS-CCCCEEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEeCCCCcEEEEccCCCC-CcCceeEeC-CCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 37899999999999888765432 222333443 5577778999999999999999998886543211 1223344666
Q ss_pred EEEEEE
Q 008050 552 SIATVS 557 (579)
Q Consensus 552 ~L~s~s 557 (579)
+++.++
T Consensus 515 yva~~~ 520 (668)
T 1kv9_A 515 YVAIMA 520 (668)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444443
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.03 E-value=8.8e-07 Score=100.78 Aligned_cols=272 Identities=8% Similarity=0.004 Sum_probs=182.3
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC-------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG-------HTERATDVTFSPVSNHVATSSADRTARLWNTD 358 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~ 358 (579)
...|.++...++|.+.+ |+.+ -|.+|+..++........ ....|.++....+|. |..|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35688999988887554 5545 588899877654432211 235799999988877 5567777778899865
Q ss_pred CCeeEEEec-------ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEec--------CCCCeEEEEEcCCC
Q 008050 359 GSLLNTFQG-------HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEG--------HSRSVYGIAFHPDG 423 (579)
Q Consensus 359 ~~~~~~~~~-------h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~--------~~~~V~~l~~spdg 423 (579)
......+.. ....|.++....+|. |.+|+.++.|..||..++........ ....|.++....+|
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 444333322 235688898887775 66788888899999887765443211 23579999998888
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEe----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe------C
Q 008050 424 SLAASCGLDALARVWDLRTGRSILALE----GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP------A 493 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~~~~~~----~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~------~ 493 (579)
.+|..|+.++-|.+||..+++...... .....|.++...++|.+.+ |+.+ -|.+||..+++...... .
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEcccccccccc
Confidence 857778887889999998876433221 2345699999988887544 4454 58999987765433221 1
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec-------CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS-------GHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
....|.++..+++ +.+.+ |+.+ -|..||..+++. .+. .....|.++...++|.+.+ |+.+| |..|+
T Consensus 496 ~~~~i~~i~~d~~-g~lWi-gt~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~d 568 (795)
T 4a2l_A 496 VSKQITTLFRDSH-KRLWI-GGEE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWV-GTREG-FYCFN 568 (795)
T ss_dssp CCCCEEEEEECTT-CCEEE-EESS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEE-EESSC-EEEEE
T ss_pred CCceEEEEEECCC-CCEEE-EeCC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCCC-ceeEC
Confidence 2356888888875 44443 4444 488899877665 232 1235689999988888554 44444 78888
Q ss_pred cCCC
Q 008050 567 TRNK 570 (579)
Q Consensus 567 ~~~~ 570 (579)
..++
T Consensus 569 ~~~~ 572 (795)
T 4a2l_A 569 EKDK 572 (795)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7554
No 250
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=1.1e-07 Score=92.63 Aligned_cols=204 Identities=10% Similarity=0.031 Sum_probs=141.7
Q ss_pred eeEEEEeCCCC--CeEEEEEccCCCEEEEEeC--CCcEEEEeCC-CCeeEEEeccc-CCeEEEEEecCCCEEEEE-eCCC
Q 008050 319 QKFSALKGHTE--RATDVTFSPVSNHVATSSA--DRTARLWNTD-GSLLNTFQGHL-DRLARMAFHPSGKYLGTT-SFDK 391 (579)
Q Consensus 319 ~~~~~l~~h~~--~V~~l~~sp~~~~l~s~s~--dg~I~iwd~~-~~~~~~~~~h~-~~I~~l~~sp~~~~l~s~-s~dg 391 (579)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|.. ++.+..+.-.. .....++++ ++.|+.+ -.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 3445554 443 3689999998644444443 5799999965 55555554222 122345555 5555544 4578
Q ss_pred eEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----CCeEEEEEcCCCC
Q 008050 392 TWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV-----KPVLGISFSPNGY 466 (579)
Q Consensus 392 ~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~I~si~~sp~g~ 466 (579)
.+.++|..+.+.+..+...... ...+++||..++++..++.|.++|..+.+.+..+.... ..++.+.|. +|.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999888776432122 23355577767667778999999999998887775322 236788888 775
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeCC-------------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC
Q 008050 467 HLATGGEDNTCRIWDLRKRKSLYVIPAH-------------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF 528 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-------------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~ 528 (579)
.++....++.|.+.|..+++.+..+... ....+.++|++++..+++++...+.+.+.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5554446889999999999999988752 1356899999988888999988999998886543
No 251
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=2.8e-07 Score=95.71 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=146.4
Q ss_pred CCCCEEEEE-ecCCeEEEEeCCCC----eeEEEEe-------CCCCCeEEEEEccCCCEEEEEeCC------CcEEEEeC
Q 008050 296 HDGNLLATS-SLSGVVKIWSMPRL----QKFSALK-------GHTERATDVTFSPVSNHVATSSAD------RTARLWNT 357 (579)
Q Consensus 296 pdg~~latg-s~dg~I~iwd~~~~----~~~~~l~-------~h~~~V~~l~~sp~~~~l~s~s~d------g~I~iwd~ 357 (579)
.++++|++. ..++.|+|+|+.+. +...++. .....-..+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778877664 46789999999755 5666652 111245667888999 77766555 78999996
Q ss_pred C-CCeeEEEeccc---CCeEEEEEecCCCEEEEEe-------------------CCCeEEEEECCCCcEEEEEecC-C-C
Q 008050 358 D-GSLLNTFQGHL---DRLARMAFHPSGKYLGTTS-------------------FDKTWRLWDVDTGVELLLQEGH-S-R 412 (579)
Q Consensus 358 ~-~~~~~~~~~h~---~~I~~l~~sp~~~~l~s~s-------------------~dg~I~lwd~~~~~~~~~~~~~-~-~ 412 (579)
. .+.+..+.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+..+... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 5 56666665221 2234588899999888885 3789999999998777665432 1 2
Q ss_pred CeEEEEE--cCCCCEEEEEe------CCCeEEEEeCCCCeE--EEEE--ecC----------------CCCeEEEEEcCC
Q 008050 413 SVYGIAF--HPDGSLAASCG------LDALARVWDLRTGRS--ILAL--EGH----------------VKPVLGISFSPN 464 (579)
Q Consensus 413 ~V~~l~~--spdg~~l~sg~------~dg~I~iwd~~~~~~--~~~~--~~~----------------~~~I~si~~sp~ 464 (579)
....+.| +|+++++++++ .++.|.+|....++. ...+ ... ......|.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 99999877776 567888776655432 1111 110 234678999999
Q ss_pred CCEEEEEe-CCCcEEEEECCC---CceeEEEeCCCC--------------CeEEEEEeeCCCeEEEEEE
Q 008050 465 GYHLATGG-EDNTCRIWDLRK---RKSLYVIPAHSN--------------LISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 465 g~~l~tgs-~Dg~I~iwDl~~---~~~~~~~~~~~~--------------~V~~v~~sp~~~~~l~sgs 515 (579)
|++|+++. ..+.|.+||+.. .+.+..+..... .-..+.++++ +.+|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD-Gk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD-GRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT-SSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC-CCEEEEEc
Confidence 99998887 468999999853 345555544311 2477999998 55555554
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=1.1e-07 Score=92.62 Aligned_cols=195 Identities=12% Similarity=0.036 Sum_probs=140.6
Q ss_pred eEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEE
Q 008050 372 LARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHS-RSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILA 448 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~-~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~ 448 (579)
...+.|++++..+++.+. ++.|.++|+.+++.+....-.. .....+++.. +.++++.-.++.+.++|..+++.+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEE
Confidence 578999998744444443 5899999999999887764222 2233556652 34555555789999999999999988
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-----CCeEEEEEeeCCCeEEEEEECCCEEEEE
Q 008050 449 LEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-----NLISQVKFEPQEGYFLVTGSYDMTVKVW 523 (579)
Q Consensus 449 ~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~V~~v~~sp~~~~~l~sgs~dg~I~iw 523 (579)
+...... ...++++|..++++..++.|.++|..+.+.+..+.... ..++.+.|. + +.+++....++.|.+.
T Consensus 102 i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N-GEVWANIWQTDCIARI 177 (266)
T ss_dssp EECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEE
T ss_pred EECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C-CEEEEecCCCCeEEEE
Confidence 8643111 23345577777777788999999999999888877532 236778888 4 6666666568999999
Q ss_pred ECCCCeEEEEecCC-------------CCcEEEEEEcCCCCEE-EEEEcCCeEEEEEcCCCC
Q 008050 524 SGRDFKLVKSLSGH-------------EAKVTSLDIHPDEQSI-ATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 524 d~~~~~~~~~l~~h-------------~~~V~~l~~s~dg~~L-~s~s~Dg~I~iW~~~~~~ 571 (579)
|..+++.+..+... ......++|+++++.| +++...+.|.+.++....
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999998888532 1356899999998765 555577889888886543
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.95 E-value=5e-07 Score=98.88 Aligned_cols=257 Identities=12% Similarity=0.046 Sum_probs=162.6
Q ss_pred EEEcCCCCE----EEEEecCCeEEEEeCCCCeeEEEEeCCCC----CeEE-EEEccCCCEEEEEe------CCCcEEEEe
Q 008050 292 CSYSHDGNL----LATSSLSGVVKIWSMPRLQKFSALKGHTE----RATD-VTFSPVSNHVATSS------ADRTARLWN 356 (579)
Q Consensus 292 ~~~spdg~~----latgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~~-l~~sp~~~~l~s~s------~dg~I~iwd 356 (579)
++++|.+.. |++++.|+.|..+|..+++.+........ .+.+ .... + ..+++++ .+|.|+.+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEE
Confidence 345444444 88888999999999999999887653220 1111 1111 3 4555555 379999999
Q ss_pred C-CCCeeEEEecccCC-------------------------------------e-EEEEEecCCCEEEEEeCC-------
Q 008050 357 T-DGSLLNTFQGHLDR-------------------------------------L-ARMAFHPSGKYLGTTSFD------- 390 (579)
Q Consensus 357 ~-~~~~~~~~~~h~~~-------------------------------------I-~~l~~sp~~~~l~s~s~d------- 390 (579)
. +++.+..+...... + ...++.+....++.++.+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 5 46666655432111 0 134566777777777665
Q ss_pred ---------CeEEEEECCCCcEEEEEecCCC---------CeEEEEEc-CCC---CEEEEEeCCCeEEEEeCCCCeEEEE
Q 008050 391 ---------KTWRLWDVDTGVELLLQEGHSR---------SVYGIAFH-PDG---SLAASCGLDALARVWDLRTGRSILA 448 (579)
Q Consensus 391 ---------g~I~lwd~~~~~~~~~~~~~~~---------~V~~l~~s-pdg---~~l~sg~~dg~I~iwd~~~~~~~~~ 448 (579)
+.|..+|..+|+.+..+..... ...-+... .+| ..++.++.+|.+.++|.++|+.+..
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 4899999999998877654321 11112332 467 4678889999999999999998876
Q ss_pred EecCC-------------CCe--------------------------EEEEEcCCCCEEEEEe-----------------
Q 008050 449 LEGHV-------------KPV--------------------------LGISFSPNGYHLATGG----------------- 472 (579)
Q Consensus 449 ~~~~~-------------~~I--------------------------~si~~sp~g~~l~tgs----------------- 472 (579)
..... .++ ..++++|+..++++..
T Consensus 349 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g 428 (599)
T 1w6s_A 349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAG 428 (599)
T ss_dssp EESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred ccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCC
Confidence 65221 111 2356666655554431
Q ss_pred ----------------------CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE
Q 008050 473 ----------------------EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530 (579)
Q Consensus 473 ----------------------~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 530 (579)
.+|.|..||+.+++.+............ .+... +.+++.++.||.|+.||.++++.
T Consensus 429 ~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~ta-gg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 429 QFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMATA-GDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp SCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEET-TTEEEEECTTSEEEEEETTTCCE
T ss_pred cceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceEec-CCEEEEECCCCeEEEEECCCCCE
Confidence 3478999999999988877532211111 12222 45666689999999999999999
Q ss_pred EEEecCCCCcE-EEEEEcCCCCE
Q 008050 531 VKSLSGHEAKV-TSLDIHPDEQS 552 (579)
Q Consensus 531 ~~~l~~h~~~V-~~l~~s~dg~~ 552 (579)
+.++......+ .-+.+..+|+.
T Consensus 507 lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 507 LWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEECSSCCCSCCEEEEETTEE
T ss_pred EEEeeCCCCcEeccEEEEeCCEE
Confidence 98886433211 22345567764
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.94 E-value=1.2e-06 Score=87.62 Aligned_cols=234 Identities=12% Similarity=0.033 Sum_probs=149.0
Q ss_pred eeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCC--CeEEEE
Q 008050 319 QKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD--KTWRLW 396 (579)
Q Consensus 319 ~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d--g~I~lw 396 (579)
+.+..+... .....++|+++++++++-..++.|..|+.+++....+. .......+++.++|+++++.... ..|..+
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 334444332 56789999999987777668899999998876554433 34568899999999865554432 257778
Q ss_pred ECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeE-EEEEe---------cCCCCeEEEEEcCCC
Q 008050 397 DVDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRS-ILALE---------GHVKPVLGISFSPNG 465 (579)
Q Consensus 397 d~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~-~~~~~---------~~~~~I~si~~sp~g 465 (579)
|..+++...... ........+++.+++..+++...+|.|.++|..+++. +.... ......+.| ++++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 877776544332 2223345566666655555555689999999876532 22111 111234555 7777
Q ss_pred CEEEEEe-CCCcEEEEECCC-Cce--eEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE--EEecCCCC
Q 008050 466 YHLATGG-EDNTCRIWDLRK-RKS--LYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV--KSLSGHEA 539 (579)
Q Consensus 466 ~~l~tgs-~Dg~I~iwDl~~-~~~--~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~--~~l~~h~~ 539 (579)
.+|+++. ..+.|.+||+.. ++. ...+.. ......++++++ ++++++....+.|.+|+.. ++.. ..+.....
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 6665554 577899999864 321 112211 123566889986 6777766667889999975 6553 23443345
Q ss_pred cEEEEEEc---CCCCEEEEEEcC
Q 008050 540 KVTSLDIH---PDEQSIATVSHD 559 (579)
Q Consensus 540 ~V~~l~~s---~dg~~L~s~s~D 559 (579)
..++++|. ++++.|+.++..
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CceEEEEecccCCCCEEEEECCC
Confidence 68999998 888887776654
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=7.6e-07 Score=97.22 Aligned_cols=254 Identities=13% Similarity=0.049 Sum_probs=163.4
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC----CeEE-EEEccCCCEEEEEeC------CCcEEEEeC-CCCeeEEE
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTE----RATD-VTFSPVSNHVATSSA------DRTARLWNT-DGSLLNTF 365 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~~-l~~sp~~~~l~s~s~------dg~I~iwd~-~~~~~~~~ 365 (579)
+..|++++.|+.|..+|..+++.+..+..... .+.+ ... .+..+++++. +|.|..+|. +++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 56788888899999999999999887653220 1211 111 1345666654 789999995 56666655
Q ss_pred ecccCC-------------------------------------e-EEEEEecCCCEEEEEeCC----------------C
Q 008050 366 QGHLDR-------------------------------------L-ARMAFHPSGKYLGTTSFD----------------K 391 (579)
Q Consensus 366 ~~h~~~-------------------------------------I-~~l~~sp~~~~l~s~s~d----------------g 391 (579)
...... + ..+++.+....++.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0 135666766677666532 3
Q ss_pred eEEEEECCCCcEEEEEecCC---------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCeEEEEEecCC------
Q 008050 392 TWRLWDVDTGVELLLQEGHS---------RSVYGIAFHPDGS---LAASCGLDALARVWDLRTGRSILALEGHV------ 453 (579)
Q Consensus 392 ~I~lwd~~~~~~~~~~~~~~---------~~V~~l~~spdg~---~l~sg~~dg~I~iwd~~~~~~~~~~~~~~------ 453 (579)
.|..+|..+++.+..+.... ....-+....+|+ .++.++.+|.+.++|..+|+.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 69999999999887765321 1111122334674 67788999999999999999887765321
Q ss_pred -------CCe--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 008050 454 -------KPV--------------------------LGISFSPNGYHLATGG---------------------------- 472 (579)
Q Consensus 454 -------~~I--------------------------~si~~sp~g~~l~tgs---------------------------- 472 (579)
.++ ..++|+|+..+|++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777776654
Q ss_pred ---------CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCc-EE
Q 008050 473 ---------EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAK-VT 542 (579)
Q Consensus 473 ---------~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~-V~ 542 (579)
.+|.|..||+.+++.+..+..... +....+... +.+++.++.||.|+.||.++++.+.++...... -.
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t~-gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTK-GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEET-TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccceeEEEC-CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 347899999999999888764322 222222333 345666889999999999999999888643221 11
Q ss_pred EEEEcCCCCEEEE
Q 008050 543 SLDIHPDEQSIAT 555 (579)
Q Consensus 543 ~l~~s~dg~~L~s 555 (579)
-+.+..+|+.++.
T Consensus 511 p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 511 PMTYSFKGKQYIG 523 (571)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEECCEEEEE
Confidence 2334566764443
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=2.3e-06 Score=97.07 Aligned_cols=277 Identities=12% Similarity=0.039 Sum_probs=176.9
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe--------------CCCCCeEEEEEccCCCEEEEEeCCCc
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK--------------GHTERATDVTFSPVSNHVATSSADRT 351 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~--------------~h~~~V~~l~~sp~~~~l~s~s~dg~ 351 (579)
...|.++....+|. |..|+..+-|.+|+..+........ .....|.++....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45688888888776 4556665668888887654322111 1345799999888776 556776777
Q ss_pred EEEEeCCCCeeEEEec----------ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCeEEEE
Q 008050 352 ARLWNTDGSLLNTFQG----------HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ---EGHSRSVYGIA 418 (579)
Q Consensus 352 I~iwd~~~~~~~~~~~----------h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~---~~~~~~V~~l~ 418 (579)
|..|+........+.. ....|.++....+|. |.+|+.++.|..||..++...... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 8889866554444321 235688888887765 667777777999998754332211 12345689998
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCC--
Q 008050 419 FHPDGSLAASCGLDALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH-- 494 (579)
Q Consensus 419 ~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-- 494 (579)
...+|.+.+ |+.++-|..||..+++...... .....|.++...++|. |..|+. +-|.+||..+++........
T Consensus 414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp ECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTS
T ss_pred ECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCccc
Confidence 888876544 6777788999987775432221 1345699999988876 555555 55999998776544433222
Q ss_pred ---CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC---CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 495 ---SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG---HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 495 ---~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
...|.++...++ +. |..|+.++-|..||..+.+....... ....|.++...++|.+.+ |+.+|.|..|+..
T Consensus 491 ~~~~~~i~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 491 QLLENFVRSIAQDSE-GR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSAR 567 (781)
T ss_dssp SCSCSCEEEEEECTT-CC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCTT
T ss_pred ccccceeEEEEEcCC-CC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECCC
Confidence 356888888775 44 44455534478898776654332211 235689999988887544 4456654888876
Q ss_pred CCC
Q 008050 569 NKG 571 (579)
Q Consensus 569 ~~~ 571 (579)
++.
T Consensus 568 ~~~ 570 (781)
T 3v9f_A 568 NFD 570 (781)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 257
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.89 E-value=3e-06 Score=86.56 Aligned_cols=241 Identities=9% Similarity=-0.045 Sum_probs=155.3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCcEEEEEec
Q 008050 331 ATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTT-SFDKTWRLWDVDTGVELLLQEG 409 (579)
Q Consensus 331 V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~dg~I~lwd~~~~~~~~~~~~ 409 (579)
.+|....+ ..+|+.+ ..+.|+..+.++.....+......+..++|++.+..|+.+ ...+.|..+++..+........
T Consensus 36 ~~C~~~~~-~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSS-CCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred Cccccccc-CceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34444444 2344433 3456888888776666655555668899999866655554 4678899999987654444433
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CcEEEEECCCCc
Q 008050 410 HSRSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLA-TGGED-NTCRIWDLRKRK 486 (579)
Q Consensus 410 ~~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~-tgs~D-g~I~iwDl~~~~ 486 (579)
.......+++.+. +.++++-...+.|.++++........+.........|+++|.+..|+ +-... +.|..+++....
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 3345678899874 44556666678999999876544434444445678999998554544 44445 789999986433
Q ss_pred eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 008050 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWS 566 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~ 566 (579)
....+...-...+.++++++++.++++-+..+.|..+++........+...-.....+++. .+..+++-...+.|..++
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence 2222222344578999998778887877778999999986543332333334456788883 344444544667888888
Q ss_pred cCCCCccc
Q 008050 567 TRNKGDEH 574 (579)
Q Consensus 567 ~~~~~~~~ 574 (579)
..+++...
T Consensus 273 ~~~G~~~~ 280 (349)
T 3v64_C 273 KFTGKNQE 280 (349)
T ss_dssp TTTCCSCE
T ss_pred ccCCCccE
Confidence 55555443
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.89 E-value=1.3e-06 Score=95.43 Aligned_cols=252 Identities=14% Similarity=0.051 Sum_probs=160.2
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCC----CeE-EEEEcc---CCC-EEEEEe------CCCcEEEEeC-CCCe
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGHTE----RAT-DVTFSP---VSN-HVATSS------ADRTARLWNT-DGSL 361 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~-~l~~sp---~~~-~l~s~s------~dg~I~iwd~-~~~~ 361 (579)
+..|++++.++.|.-+|..+++.+........ .+. ...... +++ .+++++ .+|.|.-+|. +++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 56788888999999999999999887764321 111 111111 122 566654 3789999995 4565
Q ss_pred eEEEecccCC-----------------------------------------eEEEEEecCCCEEEEEeC-----------
Q 008050 362 LNTFQGHLDR-----------------------------------------LARMAFHPSGKYLGTTSF----------- 389 (579)
Q Consensus 362 ~~~~~~h~~~-----------------------------------------I~~l~~sp~~~~l~s~s~----------- 389 (579)
+......... -..+++.+....+++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 5544321100 013456667777776663
Q ss_pred ---------C----CeEEEEECCCCcEEEEEec--CC--------CCeEEEEEc-CCCC---EEEEEeCCCeEEEEeCCC
Q 008050 390 ---------D----KTWRLWDVDTGVELLLQEG--HS--------RSVYGIAFH-PDGS---LAASCGLDALARVWDLRT 442 (579)
Q Consensus 390 ---------d----g~I~lwd~~~~~~~~~~~~--~~--------~~V~~l~~s-pdg~---~l~sg~~dg~I~iwd~~~ 442 (579)
| +.|..+|..+|+.+..+.. |. ..+ -+... .+|+ .++.++.+|.++++|..+
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 2 6899999999999887653 21 112 12222 4664 788899999999999999
Q ss_pred CeEEEEEecCCC-------------Ce--------------------------------EEEEEcCCCCEEEEEe-----
Q 008050 443 GRSILALEGHVK-------------PV--------------------------------LGISFSPNGYHLATGG----- 472 (579)
Q Consensus 443 ~~~~~~~~~~~~-------------~I--------------------------------~si~~sp~g~~l~tgs----- 472 (579)
|+.+..+..... ++ ..++++|+...+++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998877654320 00 1345666544554432
Q ss_pred ----------------------------CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 473 ----------------------------EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 473 ----------------------------~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
.+|.|..||+.+++.+.....+.. +..-.+... +.+++.|+.||.++.||
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~ta-gglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLATA-GNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEET-TTEEEEECTTSEEEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEeC-CCEEEEECCCCcEEEEE
Confidence 257899999999999887765322 111112222 45667789999999999
Q ss_pred CCCCeEEEEecCCCCcE-EEEEEcCCCCE
Q 008050 525 GRDFKLVKSLSGHEAKV-TSLDIHPDEQS 552 (579)
Q Consensus 525 ~~~~~~~~~l~~h~~~V-~~l~~s~dg~~ 552 (579)
.++++.+.++....+.+ .-+.|..+|+.
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 99999998887543321 12455667764
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.89 E-value=4.7e-07 Score=87.38 Aligned_cols=189 Identities=10% Similarity=0.108 Sum_probs=129.4
Q ss_pred eEEEEeCCCCC--eEEEEEccCCCEEEEEeCCC--cEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEEEEe-CCCeE
Q 008050 320 KFSALKGHTER--ATDVTFSPVSNHVATSSADR--TARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTW 393 (579)
Q Consensus 320 ~~~~l~~h~~~--V~~l~~sp~~~~l~s~s~dg--~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I 393 (579)
.+.++. |... ...+.|+ ++.++.+++.+| .|+++|.. ++.+..+... .......+..+++.|+... .++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 444553 5443 4889998 666666777666 89999965 4555555432 3333332333455555554 58899
Q ss_pred EEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----CCeEEEEEcCCCCEE
Q 008050 394 RLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV-----KPVLGISFSPNGYHL 468 (579)
Q Consensus 394 ~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~I~si~~sp~g~~l 468 (579)
.+||..+.+.+..+.... .-..++ +|+..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999999999888776432 222333 566766666668899999999998887765421 335567786 67655
Q ss_pred EEEeCCCcEEEEECCCCceeEEEeCC------------CCCeEEEEEeeCCCeEEEEEE
Q 008050 469 ATGGEDNTCRIWDLRKRKSLYVIPAH------------SNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 469 ~tgs~Dg~I~iwDl~~~~~~~~~~~~------------~~~V~~v~~sp~~~~~l~sgs 515 (579)
+..-.++.|.+.|..+++.+..+... ....+.|+|+|+++.++++|-
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 54447889999999999999888753 235689999998777777763
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.88 E-value=4.8e-07 Score=87.30 Aligned_cols=179 Identities=12% Similarity=0.170 Sum_probs=130.3
Q ss_pred eEEEEEecCCCEEEEEeCCC--eEEEEECCCCcEEEEEecCCCCeE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 372 LARMAFHPSGKYLGTTSFDK--TWRLWDVDTGVELLLQEGHSRSVY--GIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~s~dg--~I~lwd~~~~~~~~~~~~~~~~V~--~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
...+.|+ ++.++.+++.+| .|+.+|+.+++.+....... ... .+++.. +.+++..-.++.+.+||..+.+.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEET-TEEEEEESSSSEEEEEETTTCCEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeC-CEEEEEEeeCCEEEEEECccCcEEE
Confidence 3678888 676666777665 89999999999888775433 333 344432 2344445568999999999999999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-----CCeEEEEEeeCCCeEEEEEECCCEEEE
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-----NLISQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~V~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
++..... -..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. ++.+++....++.|.+
T Consensus 122 ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 122 SFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVR 196 (262)
T ss_dssp EEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEE
T ss_pred EEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEE
Confidence 9875432 23444 467777777778889999999999888876532 335567776 4666666556889999
Q ss_pred EECCCCeEEEEecCC------------CCcEEEEEEcCCCCEEEEEEc
Q 008050 523 WSGRDFKLVKSLSGH------------EAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 523 wd~~~~~~~~~l~~h------------~~~V~~l~~s~dg~~L~s~s~ 558 (579)
.|..+++.+..+... ....+.|+|+|+++.|+..|.
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999998887532 134689999999888877764
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.85 E-value=9.1e-06 Score=82.92 Aligned_cols=243 Identities=13% Similarity=-0.029 Sum_probs=156.8
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeEEEe
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADRTARLWNTDGSLLNTFQ 366 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~ 366 (579)
..+|.+..++ .+|+.+. ...|+..++........+. .......++|++.+..|+.+ ...+.|..++.++.....+.
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 4456666663 4554444 3457777876655444333 34458899999866666555 45688999998876544443
Q ss_pred -cccCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CeEEEEeCCC
Q 008050 367 -GHLDRLARMAFHPSGKYL-GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAA-SCGLD-ALARVWDLRT 442 (579)
Q Consensus 367 -~h~~~I~~l~~sp~~~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~-sg~~d-g~I~iwd~~~ 442 (579)
........+++.+.+..| ++-...+.|.++++..................++++|.+..|+ +-... +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 233456789999755544 5555578999999976654444444446678999998655544 44444 7898888865
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEE
Q 008050 443 GRSILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVK 521 (579)
Q Consensus 443 ~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~ 521 (579)
..............+.|+|++++..|+.+. ..+.|..+|+........+.........+++. ++.++++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEE
Confidence 433222233344578999998665555554 56789999986543333343344556778884 467777777789999
Q ss_pred EEECCCCeEEEEec
Q 008050 522 VWSGRDFKLVKSLS 535 (579)
Q Consensus 522 iwd~~~~~~~~~l~ 535 (579)
.++..+++.+..+.
T Consensus 270 ~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 270 SANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEEccCCCccEEec
Confidence 99866665444443
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.85 E-value=1.5e-05 Score=80.03 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=142.9
Q ss_pred CcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC----CcEEEEEecCCCCeEEEEEcCC-C
Q 008050 350 RTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTT-SFDKTWRLWDVDT----GVELLLQEGHSRSVYGIAFHPD-G 423 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~dg~I~lwd~~~----~~~~~~~~~~~~~V~~l~~spd-g 423 (579)
..|+..++++.....+.........++|++.+..|+.+ ..++.|..+++.. ................+++.+. +
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 56888887776554454556678899999876655554 4568999999876 2222223223345678999864 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCceeEEE-eCCCCCeEE
Q 008050 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGE-D-NTCRIWDLRKRKSLYVI-PAHSNLISQ 500 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~-D-g~I~iwDl~~~~~~~~~-~~~~~~V~~ 500 (579)
+++++-...+.|.++|+........+.........++++|.+..|+.... . +.|..+++. +.....+ ...-...+.
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNG 168 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceE
Confidence 45556567889999998755443334434456789999986555555543 3 689999885 4333333 233456789
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCCe--EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDFK--LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
++++++++.++++-+..+.|..+|+.... .+......-....++++. .+.++++-...+.|..++..+++..
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 99998777777777778899999986432 222221223446788885 3444555556688999887666544
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=3.1e-06 Score=87.71 Aligned_cols=239 Identities=8% Similarity=-0.051 Sum_probs=156.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCcEEEEEecCC
Q 008050 333 DVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTT-SFDKTWRLWDVDTGVELLLQEGHS 411 (579)
Q Consensus 333 ~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~-s~dg~I~lwd~~~~~~~~~~~~~~ 411 (579)
|....+ ..+|+.+ ....|+.++.++.....+......+..++|++.+..|+.+ ...+.|..+++..+..........
T Consensus 81 C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccc-cceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 444344 3344433 3467888888776666665556678899999866655544 467889999998776544443333
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCcee
Q 008050 412 RSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG-ED-NTCRIWDLRKRKSL 488 (579)
Q Consensus 412 ~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~D-g~I~iwDl~~~~~~ 488 (579)
.....+++.+. +.++++-...+.|.++++........+.........|+++|.+.+|+... .. +.|..+++......
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 45567889875 44555656678899999875544444444445678999998665555544 44 78999998644333
Q ss_pred EEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 489 YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 489 ~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
..+...-...+.++|+++++.++++-+..+.|..+++........+.........+++. .+.++++-...+.|..++..
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~ 317 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKF 317 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECC
Confidence 33333345578999998778888887778999999986543333333334457788883 34445555567888888865
Q ss_pred CCCccc
Q 008050 569 NKGDEH 574 (579)
Q Consensus 569 ~~~~~~ 574 (579)
+++...
T Consensus 318 ~G~~~~ 323 (386)
T 3v65_B 318 TGKNQE 323 (386)
T ss_dssp TCCSCE
T ss_pred CCcceE
Confidence 555443
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.82 E-value=9.3e-08 Score=102.56 Aligned_cols=230 Identities=15% Similarity=0.048 Sum_probs=156.0
Q ss_pred CCCCEEEEEec-CCeEEEEeCCCCeeEEEEeC-CCCCeEEEEE-c-cCCCEEEEEe------------------CCCcEE
Q 008050 296 HDGNLLATSSL-SGVVKIWSMPRLQKFSALKG-HTERATDVTF-S-PVSNHVATSS------------------ADRTAR 353 (579)
Q Consensus 296 pdg~~latgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~-s-p~~~~l~s~s------------------~dg~I~ 353 (579)
+||++|++... ++.|.+.|+.+.+....+.- .......+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887765 56799999999998885543 2356889998 5 8999998885 245788
Q ss_pred EEeCCCCe-eEEEecccCCeEEEEEecCCCEEEEEeCCC--------------------------------------eEE
Q 008050 354 LWNTDGSL-LNTFQGHLDRLARMAFHPSGKYLGTTSFDK--------------------------------------TWR 394 (579)
Q Consensus 354 iwd~~~~~-~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg--------------------------------------~I~ 394 (579)
++|.+... ..++.-. +....++++|+|+++++++.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 88866543 3333322 2456788999999999988653 366
Q ss_pred EEECCC--CcE-EEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCe------------EEEEEecCCCCeEE
Q 008050 395 LWDVDT--GVE-LLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDLRTGR------------SILALEGHVKPVLG 458 (579)
Q Consensus 395 lwd~~~--~~~-~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~~------------~~~~~~~~~~~I~s 458 (579)
+.|..+ +.. +.... -.....++.++|||+++++++ .+..|.++|+.+.+ .+.... -......
T Consensus 258 VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h 335 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH 335 (595)
T ss_dssp EEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred EEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence 777766 433 22222 123456799999999776665 67899999998653 233333 2334788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC----------CceeEEEeCCCCCeE-----EEEEeeCCCeEEEEEEC-C-CEE-
Q 008050 459 ISFSPNGYHLATGGEDNTCRIWDLRK----------RKSLYVIPAHSNLIS-----QVKFEPQEGYFLVTGSY-D-MTV- 520 (579)
Q Consensus 459 i~~sp~g~~l~tgs~Dg~I~iwDl~~----------~~~~~~~~~~~~~V~-----~v~~sp~~~~~l~sgs~-d-g~I- 520 (579)
++|+++|+..++...|++|.+||+.+ .+.+..+..|-.+-. .+.++++ |++|++... . ..+
T Consensus 336 ~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D-Gk~l~~~Nk~skdr~~ 414 (595)
T 1fwx_A 336 TAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT-NDWLVCLSKFSKDRFL 414 (595)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC-SSEEEEEESCCTTSSC
T ss_pred EEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC-CCEEEEcCCCCccccc
Confidence 99999994444555899999999876 567777777644321 1234676 666766543 2 223
Q ss_pred ----------EEEECCCCe
Q 008050 521 ----------KVWSGRDFK 529 (579)
Q Consensus 521 ----------~iwd~~~~~ 529 (579)
.++|+..++
T Consensus 415 ~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 415 NVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCSSCCEEEEEEECSSSS
T ss_pred cCCCCCCCcceEEEcCCCc
Confidence 788886544
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=8.1e-06 Score=92.61 Aligned_cols=274 Identities=8% Similarity=-0.045 Sum_probs=172.9
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe-------CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK-------GHTERATDVTFSPVSNHVATSSADRTARLWNTDG 359 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~ 359 (579)
..|.++....+|.+.+ |+.+ -+.+||..+.+...... .....|.++....+|. |..|+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5688888888877655 4445 68899987665432211 1245699998887765 55566655688888665
Q ss_pred CeeEEEec---------------ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe---------cCCCCeE
Q 008050 360 SLLNTFQG---------------HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE---------GHSRSVY 415 (579)
Q Consensus 360 ~~~~~~~~---------------h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~---------~~~~~V~ 415 (579)
.....+.. ....|.++....+|. |.+|+.++.|..|+..++....... .....|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 44332221 235688888888775 7778888889999987665433311 1235699
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 008050 416 GIAFHPDGSLAASCGLDALARVWDLRTGRSILAL---EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP 492 (579)
Q Consensus 416 ~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~---~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~ 492 (579)
++....+|.+ ..|+.++-|..||..++...... ......|.++....+|. |.+|+.++-|..||..+++......
T Consensus 367 ~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~ 444 (781)
T 3v9f_A 367 SVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIEL 444 (781)
T ss_dssp EEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCS
T ss_pred EEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEecc
Confidence 9998888764 45666677888997654322111 12335689999988876 4557776779999987665432211
Q ss_pred --CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCC-----CCcEEEEEEcCCCCEEEEEEcCCeEEEE
Q 008050 493 --AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH-----EAKVTSLDIHPDEQSIATVSHDRWIKLW 565 (579)
Q Consensus 493 --~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~L~s~s~Dg~I~iW 565 (579)
.....|.++...++ +. |..|+. +-|.+||..+++........ ...|.++...++|.+.+ |+.++-|..|
T Consensus 445 ~~~~~~~v~~i~~d~~-g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~ 520 (781)
T 3v9f_A 445 EKNELLDVRVFYEDKN-KK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIY 520 (781)
T ss_dssp TTTCCCCEEEEEECTT-SE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEE
T ss_pred CCCCCCeEEEEEECCC-CC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEE
Confidence 23466888887764 44 444555 56899998776543322212 45799999998887544 5553347778
Q ss_pred EcCCC
Q 008050 566 STRNK 570 (579)
Q Consensus 566 ~~~~~ 570 (579)
+..++
T Consensus 521 ~~~~~ 525 (781)
T 3v9f_A 521 TPDMQ 525 (781)
T ss_dssp CTTCC
T ss_pred eCCCC
Confidence 76543
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.79 E-value=3e-06 Score=81.08 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=130.6
Q ss_pred CeEEEEEecCCCEEEEEeCC--CeEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEE
Q 008050 371 RLARMAFHPSGKYLGTTSFD--KTWRLWDVDTGVELLLQEGHSRS-VYGIAFHPDGSLAASCGLDALARVWDLRTGRSIL 447 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~s~d--g~I~lwd~~~~~~~~~~~~~~~~-V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~ 447 (579)
-...+.|+. +.++.+.+.+ +.|+.+|+.+++.+......... --.+++. .+.++...-.++.+.+||..+.+.+.
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 356888985 5555555554 48999999999988876543321 1234444 23455556678999999999999999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-----CCeEEEEEeeCCCeEEEEEECCCEEEE
Q 008050 448 ALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-----NLISQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 448 ~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~V~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
++...... ..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. ++.+++....+..|.+
T Consensus 100 ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 100 RFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEE
Confidence 98754432 3555 466777777778999999999999888887532 345667776 4676666556889999
Q ss_pred EECCCCeEEEEecCC-------------CCcEEEEEEcCCCCEEEEEEc
Q 008050 523 WSGRDFKLVKSLSGH-------------EAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 523 wd~~~~~~~~~l~~h-------------~~~V~~l~~s~dg~~L~s~s~ 558 (579)
.|..+++.+..+... .+-.+.|+|+|+++.|+..+.
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 999999998877521 134689999998887776663
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.78 E-value=5.2e-05 Score=76.07 Aligned_cols=231 Identities=13% Similarity=-0.029 Sum_probs=147.8
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCC----CeeEE-EecccCCeE
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADRTARLWNTDG----SLLNT-FQGHLDRLA 373 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~~~----~~~~~-~~~h~~~I~ 373 (579)
+|+.+. ...|+..++.+......+. .-.....++|++.+..|+.+ ..++.|..++.++ ..... +........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344444 3568888888766555444 44568899999876655555 4568999999776 33232 223334568
Q ss_pred EEEEecCCCEE-EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCeEEEEEe
Q 008050 374 RMAFHPSGKYL-GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-D-ALARVWDLRTGRSILALE 450 (579)
Q Consensus 374 ~l~~sp~~~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-d-g~I~iwd~~~~~~~~~~~ 450 (579)
.+++.+.+..| ++-...+.|.++++..................++++|.+..|+.+.. . +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 89998755544 45466789999999765544444434457789999986665555544 3 788888886433222223
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeC--CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 451 GHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 451 ~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
........|+|++++..|+.+. ..+.|..+|+........... .......+++. ++.++++-...+.|..++..+
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCC
Confidence 3345678999998766665554 567899999864322222222 22345678885 477777777789999999877
Q ss_pred CeEEEEe
Q 008050 528 FKLVKSL 534 (579)
Q Consensus 528 ~~~~~~l 534 (579)
++.+..+
T Consensus 239 g~~~~~i 245 (316)
T 1ijq_A 239 GSDVNLL 245 (316)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 7655444
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.75 E-value=3.8e-05 Score=79.83 Aligned_cols=243 Identities=11% Similarity=-0.040 Sum_probs=158.9
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-----eeEEEecccCCeE
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDGS-----LLNTFQGHLDRLA 373 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~~-----~~~~~~~h~~~I~ 373 (579)
+|+.+. ...|+..++........+ .....+..|+|++.+..|+.+. ..+.|+.++.++. ....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444443 578888888766544443 3456789999998766665554 5678988987762 2233333455678
Q ss_pred EEEEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEe
Q 008050 374 RMAFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL--DALARVWDLRTGRSILALE 450 (579)
Q Consensus 374 ~l~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~--dg~I~iwd~~~~~~~~~~~ 450 (579)
.+++...+. ++++-...+.|.+.++..................|+++|.+..|+.... .+.|...++..........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998444 4555556789999999877655555545556889999996665555542 4789999987544433334
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeC--CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 451 GHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 451 ~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
........|++++++..|+.+. ..+.|..+|+........+.. .......+++. ++.++++-...+.|..+|..+
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC
Confidence 4445688999998766666654 567899999865433333332 22345567764 467778877788999999777
Q ss_pred CeEEEEecCCCCcEEEEEE
Q 008050 528 FKLVKSLSGHEAKVTSLDI 546 (579)
Q Consensus 528 ~~~~~~l~~h~~~V~~l~~ 546 (579)
++.+..+........++.+
T Consensus 321 G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 321 GSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp CCCCEEEECSCSCEEEEEE
T ss_pred CCceEEEecCCCCCceEEE
Confidence 7666655543344555543
No 269
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.74 E-value=1.4e-05 Score=82.78 Aligned_cols=253 Identities=13% Similarity=-0.035 Sum_probs=162.1
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeEEEe-
Q 008050 289 LSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATS-SADRTARLWNTDGSLLNTFQ- 366 (579)
Q Consensus 289 I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~- 366 (579)
-+|.+..+ ..+|+.+. ...|+.+++........+. .......++|++.+..|+.+ ...+.|..|+.++.....+.
T Consensus 79 ~~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 34545555 34444444 4568888887655444443 34568899999866655544 45688999998876554443
Q ss_pred cccCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCC
Q 008050 367 GHLDRLARMAFHPSGKYL-GTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG-LD-ALARVWDLRTG 443 (579)
Q Consensus 367 ~h~~~I~~l~~sp~~~~l-~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~d-g~I~iwd~~~~ 443 (579)
........+++.+.+..| ++-...+.|.++++..................++++|.+..|+.+. .. +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 233456788998755554 4555568899999876654444444446788999998666555544 44 78888888754
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEE
Q 008050 444 RSILALEGHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV 522 (579)
Q Consensus 444 ~~~~~~~~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~i 522 (579)
.............+.|+|++++..|+.+ +..+.|..+|+........+.........+++. ++.++++....+.|..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEE
Confidence 4333333344457899999865555554 466789999986544333344344556778884 4677787778899999
Q ss_pred EECCCCeEEEEecCCCCcEEEEEE
Q 008050 523 WSGRDFKLVKSLSGHEAKVTSLDI 546 (579)
Q Consensus 523 wd~~~~~~~~~l~~h~~~V~~l~~ 546 (579)
++..+++.+..+........++++
T Consensus 314 ~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 314 ANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTCCSCEEEECSCSCCCCEEE
T ss_pred EECCCCcceEEEccCCCCCceEEE
Confidence 997677655555433333444444
No 270
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.74 E-value=2.2e-05 Score=81.61 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=153.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCC----cEEEEEecCCCCeEE
Q 008050 342 HVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTG----VELLLQEGHSRSVYG 416 (579)
Q Consensus 342 ~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~----~~~~~~~~~~~~V~~ 416 (579)
+|+.+. ...|+..++++.....+......+..++|++.+..|+.+. ..+.|+.+++... ...............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444443 4778888888776666666677889999998766665554 5688999998752 233333334456788
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCceeEEEeC
Q 008050 417 IAFHP-DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG-E-DNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 417 l~~sp-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~-Dg~I~iwDl~~~~~~~~~~~ 493 (579)
+++.+ .++++++-...+.|.+.++........+.........|+++|.+.+|+... . .+.|...++........+..
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence 99998 455666666788999999986655555554555688999999655555554 3 37899999865443333333
Q ss_pred CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec--CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 494 HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS--GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 494 ~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
.-...+.|+++++++.++++-...+.|..+|+........+. ..-....++++. .+.++++-...+.|..++..+++
T Consensus 244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 445678999998877777777778899999986543222222 223446677774 33344555566788888876665
Q ss_pred cccc
Q 008050 572 DEHA 575 (579)
Q Consensus 572 ~~~~ 575 (579)
....
T Consensus 323 ~~~~ 326 (400)
T 3p5b_L 323 DVNL 326 (400)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 5443
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.74 E-value=3.2e-07 Score=102.07 Aligned_cols=267 Identities=10% Similarity=0.052 Sum_probs=157.4
Q ss_pred EEEEcC-CCCEEEEEecCC-----------eEEEEeCCCCee--EEEEe-CCCCCeEEEEEccCCCEEEEEeC-CCcEEE
Q 008050 291 GCSYSH-DGNLLATSSLSG-----------VVKIWSMPRLQK--FSALK-GHTERATDVTFSPVSNHVATSSA-DRTARL 354 (579)
Q Consensus 291 ~~~~sp-dg~~latgs~dg-----------~I~iwd~~~~~~--~~~l~-~h~~~V~~l~~sp~~~~l~s~s~-dg~I~i 354 (579)
++++.+ ++++++.|+.++ .+.+||..+++- +..+. .+.....++++..++.++++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 888999887543 588999876542 33332 24444556788889999999985 458999
Q ss_pred EeCCCCeeEEEec-ccCC-eEEEEEecCCCEEEEEe-CC-----CeEEEEECCCCcEEEEEe----cCCCCeEEEEEcCC
Q 008050 355 WNTDGSLLNTFQG-HLDR-LARMAFHPSGKYLGTTS-FD-----KTWRLWDVDTGVELLLQE----GHSRSVYGIAFHPD 422 (579)
Q Consensus 355 wd~~~~~~~~~~~-h~~~-I~~l~~sp~~~~l~s~s-~d-----g~I~lwd~~~~~~~~~~~----~~~~~V~~l~~spd 422 (579)
||........+.. +..+ -.++++.++++.++.|+ .+ ..+.+||..++....... .....-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9966543333321 1111 13455667899888888 44 579999998876443310 00000000122245
Q ss_pred CCEEEEEeCCC---------eEEEEeCCCCeEEEEEecCC---------CCeEEEEEcC-CCCEEEEEeCCC--------
Q 008050 423 GSLAASCGLDA---------LARVWDLRTGRSILALEGHV---------KPVLGISFSP-NGYHLATGGEDN-------- 475 (579)
Q Consensus 423 g~~l~sg~~dg---------~I~iwd~~~~~~~~~~~~~~---------~~I~si~~sp-~g~~l~tgs~Dg-------- 475 (579)
+.+++.|+.+| .+..||..+.........+. ..-.++.|.. +++++++|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 55556665444 56788888776443332221 1234455543 778888887542
Q ss_pred ---cEEEEECCCCceeEEE--eCCCCC-eEEEEEeeCCCeEEEEEECC-----------CEEEEEECCCCeEEE--EecC
Q 008050 476 ---TCRIWDLRKRKSLYVI--PAHSNL-ISQVKFEPQEGYFLVTGSYD-----------MTVKVWSGRDFKLVK--SLSG 536 (579)
Q Consensus 476 ---~I~iwDl~~~~~~~~~--~~~~~~-V~~v~~sp~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~--~l~~ 536 (579)
.|.+||..+..-.... ..+... -.++.+.++ +.+++.|+.+ ..+.+||..+.+... .+..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~-g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~ 508 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD-GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT-SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC-CCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence 6788888766544332 222222 234455564 7788888754 568999987655332 2222
Q ss_pred CCCcEEEEEEcCCCCEEEEEEc
Q 008050 537 HEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 537 h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
.........+.++|+.++.||.
T Consensus 509 ~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 509 VRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCTTEEEEECTTSCEEEEECC
T ss_pred ccccccHhhcCCCcEEEecCCC
Confidence 2222344556789999999884
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.74 E-value=4.6e-06 Score=79.73 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=127.8
Q ss_pred eeEEEEeCCCC--CeEEEEEccCCCEEEEEeCC--CcEEEEeCC-CCeeEEEecccCCeE--EEEEecCCCEE-EEEeCC
Q 008050 319 QKFSALKGHTE--RATDVTFSPVSNHVATSSAD--RTARLWNTD-GSLLNTFQGHLDRLA--RMAFHPSGKYL-GTTSFD 390 (579)
Q Consensus 319 ~~~~~l~~h~~--~V~~l~~sp~~~~l~s~s~d--g~I~iwd~~-~~~~~~~~~h~~~I~--~l~~sp~~~~l-~s~s~d 390 (579)
+.+.++ .|.. -...+.|+. +.++.+.+.+ ..|+.+|.. ++.+..+.... ... .+.+. ++.| .....+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEe--CCEEEEEEeeC
Confidence 344455 3543 467899986 5555666654 489999965 45555554322 222 34443 4444 445568
Q ss_pred CeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----CCeEEEEEcCCC
Q 008050 391 KTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV-----KPVLGISFSPNG 465 (579)
Q Consensus 391 g~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~I~si~~sp~g 465 (579)
+.+.+||..+.+.+..+.... .-..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 999999999999888876433 223444 456666666678999999999998887776422 345667776 66
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeCC-------------CCCeEEEEEeeCCCeEEEEEE
Q 008050 466 YHLATGGEDNTCRIWDLRKRKSLYVIPAH-------------SNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 466 ~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~-------------~~~V~~v~~sp~~~~~l~sgs 515 (579)
+.++..-.++.|.+.|..+++.+..+... ....+.|+|+|+++.++++|-
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65544446889999999999999888632 135789999998788888773
No 273
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=1.5e-06 Score=83.91 Aligned_cols=177 Identities=12% Similarity=0.122 Sum_probs=130.3
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCe--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEE
Q 008050 372 LARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSV--YGIAFHPDGSLAASCGLDALARVWDLRTGRSILAL 449 (579)
Q Consensus 372 I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V--~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~ 449 (579)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+... -. ... -.+++.. +.+++..-.++.+.+||..+.+.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 3678887 4566777778889999999999877766 22 233 3355543 345555667899999999999999998
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCC-----CCeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 450 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHS-----NLISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 450 ~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~-----~~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
..... -..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. ++.+++....++.|.+.|
T Consensus 133 ~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 133 RYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp ECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEEC
T ss_pred eCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEe
Confidence 75432 23444 467788888889999999999999888886532 245677877 466666555688999999
Q ss_pred CCCCeEEEEecCC-------------CCcEEEEEEcCCCCEEEEEE
Q 008050 525 GRDFKLVKSLSGH-------------EAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 525 ~~~~~~~~~l~~h-------------~~~V~~l~~s~dg~~L~s~s 557 (579)
..+++.+..+... .+-.+.|+|+++++.|+..+
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999988877531 13568999999877766665
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=9.9e-06 Score=85.16 Aligned_cols=235 Identities=10% Similarity=0.060 Sum_probs=146.9
Q ss_pred CeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC-C----cEEEEeCCCCe
Q 008050 288 PLSGCSYSH-DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD-R----TARLWNTDGSL 361 (579)
Q Consensus 288 ~I~~~~~sp-dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d-g----~I~iwd~~~~~ 361 (579)
....++|+| ++..|+++...+.|+.+|..++..... .........|+|++++++|+++... + .+.+++.++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 455666665558899999887654443 3355668899999999966666542 2 34444544432
Q ss_pred e--EEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCC-EEEEEeCCCeEE
Q 008050 362 L--NTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVELLLQE-GHSRSVYGIAFHPDGS-LAASCGLDALAR 436 (579)
Q Consensus 362 ~--~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~spdg~-~l~sg~~dg~I~ 436 (579)
. ..+. .......++++| ++.++++-..++.|..|+..++....... ........++|+++|+ ++++-...+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 2 2222 234457888999 66666666677899999998776533222 2234577899999999 455555678899
Q ss_pred EEeCCC--CeE--EEEEecC---------------CCCeE-EEEEc--------CCCCEEEEEeCCCcEEEEECCCCcee
Q 008050 437 VWDLRT--GRS--ILALEGH---------------VKPVL-GISFS--------PNGYHLATGGEDNTCRIWDLRKRKSL 488 (579)
Q Consensus 437 iwd~~~--~~~--~~~~~~~---------------~~~I~-si~~s--------p~g~~l~tgs~Dg~I~iwDl~~~~~~ 488 (579)
.++... +.. ...+.+. -.... .+++. ++|.++++-...+.|+.++. .+...
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~ 374 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT 374 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE
Confidence 987653 221 1222211 11123 45553 34666666566778999983 55433
Q ss_pred EEEeC----C-------------CCCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 489 YVIPA----H-------------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 489 ~~~~~----~-------------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
..... . -.....++++++++.++++-..++.|+.++.
T Consensus 375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 33321 0 1146788898855777777777788888764
No 275
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.71 E-value=4e-06 Score=80.95 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=129.6
Q ss_pred eEEEEeCCCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCeeEEEecccCCeEEEEEecCCCEEE-EEeCCCeEEE
Q 008050 320 KFSALKGHTE--RATDVTFSPVSNHVATSSADRTARLWNTD-GSLLNTFQGHLDRLARMAFHPSGKYLG-TTSFDKTWRL 395 (579)
Q Consensus 320 ~~~~l~~h~~--~V~~l~~sp~~~~l~s~s~dg~I~iwd~~-~~~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~l 395 (579)
.+.++. |.. -...+.|+ ++.++.+.+.+|.|+++|.. ++.+..+ -.......-....++.|+ +...++.+.+
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence 344443 443 34788887 35666777788899999965 4555555 223333322233444444 4456899999
Q ss_pred EECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCC-----CCeEEEEEcCCCCEEEE
Q 008050 396 WDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHV-----KPVLGISFSPNGYHLAT 470 (579)
Q Consensus 396 wd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~~I~si~~sp~g~~l~t 470 (579)
||..+.+.+..+.... .-..++ +|+..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+.++.
T Consensus 121 ~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 121 WSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN 196 (268)
T ss_dssp EETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE
Confidence 9999999988776432 223444 567777777779999999999999887775422 245677877 7755544
Q ss_pred EeCCCcEEEEECCCCceeEEEeCC-------------CCCeEEEEEeeCCCeEEEEEE
Q 008050 471 GGEDNTCRIWDLRKRKSLYVIPAH-------------SNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~~~~~~~~-------------~~~V~~v~~sp~~~~~l~sgs 515 (579)
...++.|.+.|..+++.+..+... ....+.|+|+|+++.++++|-
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 446889999999999999888642 136789999998788888773
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=6.3e-06 Score=86.64 Aligned_cols=237 Identities=12% Similarity=0.110 Sum_probs=148.3
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCcE
Q 008050 330 RATDVTFSP-VSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGVE 403 (579)
Q Consensus 330 ~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~~ 403 (579)
....|+|+| ++..|+++...+.|+.++.++..+..+.........++|++++++|+++... ..+.+++......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 357889998 4566666665588999998887777776666778999999999977776652 1344444332211
Q ss_pred -EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 008050 404 -LLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSILALEG-HVKPVLGISFSPNGYHLATG-GEDNTCRI 479 (579)
Q Consensus 404 -~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~I~si~~sp~g~~l~tg-s~Dg~I~i 479 (579)
...+. ......+++++| +|.++++-..++.|..|+...+........ .......|+|+++|++|+.+ ...+.|..
T Consensus 218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 11111 123456788999 777777777789999999987765322222 22346789999999965555 46778999
Q ss_pred EECCC--Cce--eEEEeCC---------------CCCeE-EEEEee-------CCCeEEEEEECCCEEEEEECCCCeEEE
Q 008050 480 WDLRK--RKS--LYVIPAH---------------SNLIS-QVKFEP-------QEGYFLVTGSYDMTVKVWSGRDFKLVK 532 (579)
Q Consensus 480 wDl~~--~~~--~~~~~~~---------------~~~V~-~v~~sp-------~~~~~l~sgs~dg~I~iwd~~~~~~~~ 532 (579)
++... +.. +..+.+. -..-. .+.+.. ..+.++++-..++.|+.++ .++....
T Consensus 297 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~ 375 (430)
T 3tc9_A 297 SDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTT 375 (430)
T ss_dssp EEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEE
T ss_pred EeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEE
Confidence 87653 211 2222211 01122 444432 1255666666678899998 4565443
Q ss_pred EecC----C-------------CCcEEEEEEcCC-CCEEEEEEcCCeEEEEEcC
Q 008050 533 SLSG----H-------------EAKVTSLDIHPD-EQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 533 ~l~~----h-------------~~~V~~l~~s~d-g~~L~s~s~Dg~I~iW~~~ 568 (579)
.... . -.....++++++ +.++++-..++.|+.+++.
T Consensus 376 ~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 376 FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 3211 0 124789999995 5555555566788888764
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.70 E-value=8.3e-06 Score=81.41 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=138.0
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCeeEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR--TARLWNTDGSLLNT 364 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg--~I~iwd~~~~~~~~ 364 (579)
....+++|+++|+++++...++.|..||.... ....+. ......++++.++++++++....+ .|..++.....+..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45778999999998777778899999997653 333333 345689999999999666554432 46666644433333
Q ss_pred Eec--ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE-EEEEe---------cCCCCeEEEEEcCCCCEEE-EEeC
Q 008050 365 FQG--HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE-LLLQE---------GHSRSVYGIAFHPDGSLAA-SCGL 431 (579)
Q Consensus 365 ~~~--h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~-~~~~~---------~~~~~V~~l~~spdg~~l~-sg~~ 431 (579)
+.. .......++..+.+..+++...++.|+++|..++.. +.... ......+.+ ++++..|+ +-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 322 122234555555554444444689999999876532 21111 111234555 77776554 4456
Q ss_pred CCeEEEEeCCC-CeE--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeCCCCCeEEEEEe--
Q 008050 432 DALARVWDLRT-GRS--ILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY--VIPAHSNLISQVKFE-- 504 (579)
Q Consensus 432 dg~I~iwd~~~-~~~--~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~--~~~~~~~~V~~v~~s-- 504 (579)
.+.|..||+.. ++. ...+.. ......++++++|+++++....+.|.+||.. ++... .+.......++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~ 265 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT 265 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence 78999999874 321 112211 1235678999999887777778899999975 55432 233333568899998
Q ss_pred -eCCCeEEEEEE
Q 008050 505 -PQEGYFLVTGS 515 (579)
Q Consensus 505 -p~~~~~l~sgs 515 (579)
++++.++++..
T Consensus 266 ~~d~~~LyVt~~ 277 (306)
T 2p4o_A 266 EGDCTAIYVVTN 277 (306)
T ss_dssp TTTTTEEEEEEC
T ss_pred cCCCCEEEEECC
Confidence 66455555544
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.67 E-value=5.2e-06 Score=93.79 Aligned_cols=239 Identities=12% Similarity=-0.019 Sum_probs=137.4
Q ss_pred CeEEEEEc-cCCCEEEEEeC-CC----cEEEEeCCCC-eeE--EEecccCCeEEEEEecCCCEEEEEeCC-----CeEEE
Q 008050 330 RATDVTFS-PVSNHVATSSA-DR----TARLWNTDGS-LLN--TFQGHLDRLARMAFHPSGKYLGTTSFD-----KTWRL 395 (579)
Q Consensus 330 ~V~~l~~s-p~~~~l~s~s~-dg----~I~iwd~~~~-~~~--~~~~h~~~I~~l~~sp~~~~l~s~s~d-----g~I~l 395 (579)
.+....|| |||++|+.+.. +| .|+++|+.+. ... .+. .....+.|+|+|+.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998876543 33 4999997765 311 111 113568899999988877765 36888
Q ss_pred EECCCCc--EEEEEe-cCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCe-EE--EEE-ecCCCCeEEEEEcCCC
Q 008050 396 WDVDTGV--ELLLQE-GHSRSVYGIAFHPDGSLAASCGL---DALARVWDLRTGR-SI--LAL-EGHVKPVLGISFSPNG 465 (579)
Q Consensus 396 wd~~~~~--~~~~~~-~~~~~V~~l~~spdg~~l~sg~~---dg~I~iwd~~~~~-~~--~~~-~~~~~~I~si~~sp~g 465 (579)
+++.++. ....+. ........+.|+|||++|+.... ...|.++|+.++. .. ..+ ........++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 9998764 223332 23345678899999998876653 4468889998752 12 233 3344556666665444
Q ss_pred CEEEEEeCC----CcEEEEECCCCceeEE-EeCCCCCeEEEEEeeCCCeEEEEEECCCEE--EEEEC-------CCCeEE
Q 008050 466 YHLATGGED----NTCRIWDLRKRKSLYV-IPAHSNLISQVKFEPQEGYFLVTGSYDMTV--KVWSG-------RDFKLV 531 (579)
Q Consensus 466 ~~l~tgs~D----g~I~iwDl~~~~~~~~-~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I--~iwd~-------~~~~~~ 531 (579)
.+++....+ ..|..+|+.+...... +..+...+.--.+...++.++++...+|.. .++++ .+++.+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~ 411 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGL 411 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccc
Confidence 444444433 3677778764322222 333333322223444456777888888864 45564 333313
Q ss_pred EEecCC-CCcEEEEEE----cCCCC-EEEEEEcC---CeEEEEEcCCCC
Q 008050 532 KSLSGH-EAKVTSLDI----HPDEQ-SIATVSHD---RWIKLWSTRNKG 571 (579)
Q Consensus 532 ~~l~~h-~~~V~~l~~----s~dg~-~L~s~s~D---g~I~iW~~~~~~ 571 (579)
..+... ...+..+.+ +.++. ++++.+.. +.++.+++.+++
T Consensus 412 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 412 REVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred eEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 333211 122334433 34554 44444433 457777776543
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.67 E-value=5.2e-05 Score=76.45 Aligned_cols=270 Identities=9% Similarity=0.007 Sum_probs=153.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeC----CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008050 285 DDRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKG----HTERATDVTFSPVSNHVATSSADRTARLWNTDGS 360 (579)
Q Consensus 285 h~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~ 360 (579)
....+.++.|..++..+++| ..|.| ++..+.++.-..+.. ....+.+|.|.+ +. ++.++..|.|..-.-.++
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~S~DgG~ 109 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLHTTDGGQ 109 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEEESSTTS
T ss_pred CCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEEECCCCC
Confidence 34579999998888877755 46765 333444443333221 244688999986 44 444555665544322233
Q ss_pred eeEEEe---cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008050 361 LLNTFQ---GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-LQEGHSRSVYGIAFHPDGSLAASCGLDALAR 436 (579)
Q Consensus 361 ~~~~~~---~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~ 436 (579)
.-.... .+...+..+.+..++..++++ .+|.|.. ....++.-. ........+..+.+.+++.+++++...+..+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~ 187 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 187 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 322222 123456778877777655554 4554432 222333222 2334556789999999988877665444444
Q ss_pred EEeC--CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC----CCCCeEEEEEeeCCCeE
Q 008050 437 VWDL--RTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA----HSNLISQVKFEPQEGYF 510 (579)
Q Consensus 437 iwd~--~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~----~~~~V~~v~~sp~~~~~ 510 (579)
-+|- .+.+.+. ......+..+.+.+++..++ ++.+|.+++++...++.-..+.. +...+..+.+.++ +.+
T Consensus 188 S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~-~~~ 263 (327)
T 2xbg_A 188 TWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP-NEV 263 (327)
T ss_dssp EECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS-SCE
T ss_pred EeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC-CEE
Confidence 4442 2223321 23456788999999887554 55678887775332333222221 2235788888874 555
Q ss_pred EEEEECCCEEEEEECCCCeEEEEec---CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 511 LVTGSYDMTVKVWSGRDFKLVKSLS---GHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
++++ .+|.| ++....++.-..+. .+...+.++.|..++ .++.++.+|.|.-++-
T Consensus 264 ~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 264 WLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 5554 46766 34444443333332 234567888887554 5667778998776653
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.66 E-value=2.5e-05 Score=78.59 Aligned_cols=233 Identities=11% Similarity=0.018 Sum_probs=147.5
Q ss_pred EEEEEecCCeEEEEeCCCCe-eEEEEeCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCe--eEEEecccCCeEEE
Q 008050 300 LLATSSLSGVVKIWSMPRLQ-KFSALKGHTERATDVTFSPVSNHVA-TSSADRTARLWNTDGSL--LNTFQGHLDRLARM 375 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~sp~~~~l~-s~s~dg~I~iwd~~~~~--~~~~~~h~~~I~~l 375 (579)
+|+.+. ...|+.+++.... ....+...-....++.|++.+..|+ +-...+.|..++.++.. ...+.........+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 4678888887653 1111111223567899998655554 44556889999977653 22233333456789
Q ss_pred EEecCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecC
Q 008050 376 AFHPSGK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG--LDALARVWDLRTGRSILALEGH 452 (579)
Q Consensus 376 ~~sp~~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~ 452 (579)
++.+.+. ++++-...+.|.++++..................+++.|.+..|+.+. ..+.|..+++............
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~ 164 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 164 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence 9987554 445555678999999976554444434456678999998655555555 3578888888643332223333
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEE
Q 008050 453 VKPVLGISFSPNGYHLATG-GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 453 ~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 531 (579)
....+.|+|++++..|+.+ +..+.|..+|+........+.........+++. ++.++++-...+.|..++..+++..
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCce
Confidence 4457899999966666555 466789999986433333333334556778875 4677777777899999998777654
Q ss_pred EEec
Q 008050 532 KSLS 535 (579)
Q Consensus 532 ~~l~ 535 (579)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 281
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.64 E-value=3e-05 Score=74.97 Aligned_cols=200 Identities=12% Similarity=0.106 Sum_probs=138.0
Q ss_pred EecccCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCcEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 365 FQGHLDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDTGVELLLQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
+.+-...+..++|+|+++.|+ +...++.|...|.. ++.+.... +.....-.|++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 345556799999999776554 57778999999998 76666553 2235688899999888777766778999998765
Q ss_pred CeE---EEEEe------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeEEEe-------CCCCCeEEEEE
Q 008050 443 GRS---ILALE------GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR---KRKSLYVIP-------AHSNLISQVKF 503 (579)
Q Consensus 443 ~~~---~~~~~------~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~---~~~~~~~~~-------~~~~~V~~v~~ 503 (579)
... +.... ..+.....|+|++.+..|+++...+...||.+. ....+..+. .+...+..+++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 442 22222 123456899999998778777765555555543 111222221 13345789999
Q ss_pred eeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCC---------CcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 504 EPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHE---------AKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 504 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
+|..+++++.+..+..+.++|.. ++.+..+.-.. ..--.|+|.++|+ |+..+.-..++.+.-
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred cCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 99989999998899999999965 55655553221 2568999999997 555577776666654
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.64 E-value=1.8e-05 Score=83.12 Aligned_cols=234 Identities=15% Similarity=0.104 Sum_probs=147.6
Q ss_pred CeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCc
Q 008050 330 RATDVTFSPV--SNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDK-----TWRLWDVDTGV 402 (579)
Q Consensus 330 ~V~~l~~sp~--~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg-----~I~lwd~~~~~ 402 (579)
....|+|+++ +..|+.+...+.|+.++..+..+..+.........++|+++|+ |+++...+ .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 4556555554899999987777777766667789999999999 55554422 23334433222
Q ss_pred E-EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeEEEEE-ec-CCCCeEEEEEcCCCCEEEEEe-CCCcE
Q 008050 403 E-LLLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLRTGRSILAL-EG-HVKPVLGISFSPNGYHLATGG-EDNTC 477 (579)
Q Consensus 403 ~-~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~~~~~~~~~-~~-~~~~I~si~~sp~g~~l~tgs-~Dg~I 477 (579)
. .... ........+++++ +|.++++-..++.|+.+|..++.....+ .. ....-..|+|+++|++|+.+. ..+.|
T Consensus 219 ~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred eccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 0111 1233456788999 7777766667889999999877653222 21 122235799999998665554 56789
Q ss_pred EEEECCC--Cce--eEEEeCC---------------CCCeEEEEE---------eeCCCeEEEEEECCCEEEEEECCCCe
Q 008050 478 RIWDLRK--RKS--LYVIPAH---------------SNLISQVKF---------EPQEGYFLVTGSYDMTVKVWSGRDFK 529 (579)
Q Consensus 478 ~iwDl~~--~~~--~~~~~~~---------------~~~V~~v~~---------sp~~~~~l~sgs~dg~I~iwd~~~~~ 529 (579)
+.+++.. +.. ...+.+. -.....+++ .. .+.++++-..++.|+.++. ++.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCC
Confidence 9988652 221 1222211 123566888 44 4677777777889999985 564
Q ss_pred EEEEecCC------------------CCcEEEEEEc-CCCCEEEEEEcCCeEEEEEcC
Q 008050 530 LVKSLSGH------------------EAKVTSLDIH-PDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 530 ~~~~l~~h------------------~~~V~~l~~s-~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.. .+.+. -.....|+++ ++|.++++-..++.|+.++++
T Consensus 376 v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 43 33221 1236789999 566655555567788888764
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=2.7e-06 Score=96.15 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=141.3
Q ss_pred CCCC-CeeEEEEc-CCCCEEEEEec-CC----eEEEEeCCCC-eeEE-EEeCCCCCeEEEEEccCCCEEEEEeCC-----
Q 008050 284 GDDR-PLSGCSYS-HDGNLLATSSL-SG----VVKIWSMPRL-QKFS-ALKGHTERATDVTFSPVSNHVATSSAD----- 349 (579)
Q Consensus 284 gh~~-~I~~~~~s-pdg~~latgs~-dg----~I~iwd~~~~-~~~~-~l~~h~~~V~~l~~sp~~~~l~s~s~d----- 349 (579)
+|.- .+...+|| |||++|+.+.. +| .|+++|+.++ +.+. .+. .....+.|+|+|+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 3443 67889999 99999887654 23 5999999988 6321 111 113568999999988877765
Q ss_pred CcEEEEeCCCCe---eEEEe-cccCCeEEEEEecCCCEEEEEeC---CCeEEEEECCCCc--E--EEEEecCCCCeEEEE
Q 008050 350 RTARLWNTDGSL---LNTFQ-GHLDRLARMAFHPSGKYLGTTSF---DKTWRLWDVDTGV--E--LLLQEGHSRSVYGIA 418 (579)
Q Consensus 350 g~I~iwd~~~~~---~~~~~-~h~~~I~~l~~sp~~~~l~s~s~---dg~I~lwd~~~~~--~--~~~~~~~~~~V~~l~ 418 (579)
..|+++++.+.. ...+. ........+.|+|+|++|+..+. ...|+++|+.++. . ...........+++.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 257777776532 22332 22334567899999998887663 3568899998752 3 233333445566777
Q ss_pred EcCCCCEEEEEeCC----CeEEEEeCCCCeEEEE-EecCCC--CeEEEEEcCCCCEEEEEeCCCc--EEEEEC-------
Q 008050 419 FHPDGSLAASCGLD----ALARVWDLRTGRSILA-LEGHVK--PVLGISFSPNGYHLATGGEDNT--CRIWDL------- 482 (579)
Q Consensus 419 ~spdg~~l~sg~~d----g~I~iwd~~~~~~~~~-~~~~~~--~I~si~~sp~g~~l~tgs~Dg~--I~iwDl------- 482 (579)
|+.++.+++.+..+ ..|..+|+.++..... +..+.. .+..+.+. .+.++++...+|. |.++|+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVF 405 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccc
Confidence 66555455555443 3677778765322122 222332 35566665 3445566666775 556675
Q ss_pred CCCceeEEEeCCC-CCeEEEEE----eeCCCeEEEEEECC---CEEEEEECCCCe
Q 008050 483 RKRKSLYVIPAHS-NLISQVKF----EPQEGYFLVTGSYD---MTVKVWSGRDFK 529 (579)
Q Consensus 483 ~~~~~~~~~~~~~-~~V~~v~~----sp~~~~~l~sgs~d---g~I~iwd~~~~~ 529 (579)
..++....+.... ..+..+.+ +.++..++++.+.. +.++.+|+.+++
T Consensus 406 ~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 406 KAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3333134443221 22333322 33545565555443 457778877665
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.62 E-value=3.8e-05 Score=77.24 Aligned_cols=226 Identities=10% Similarity=-0.021 Sum_probs=143.8
Q ss_pred CCcEEEEeCCCCe--eEEEecccCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCCcE-EEEEecCCCCeEEEEEcC-CC
Q 008050 349 DRTARLWNTDGSL--LNTFQGHLDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDTGVE-LLLQEGHSRSVYGIAFHP-DG 423 (579)
Q Consensus 349 dg~I~iwd~~~~~--~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~~~~-~~~~~~~~~~V~~l~~sp-dg 423 (579)
...|+.+++++.. .............+.|++.+..|+ +-...+.|..+++..+.. .............+++.+ .+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678888877642 222222334567899998655554 445678899999877632 112222234566889987 45
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeCCCCCeEEE
Q 008050 424 SLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRKRKSLYVIPAHSNLISQV 501 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v 501 (579)
.++++-...+.|.++++........+.........+++.|.+.+|+... ..+.|..+++........+...-..-+.+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 5556666778999999875543333334445678999998655555554 35789999986433222233333456899
Q ss_pred EEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcccc
Q 008050 502 KFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHA 575 (579)
Q Consensus 502 ~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~ 575 (579)
+|+++++.++++-+..+.|..+|+........+.+.......+++.. +.++++-...+.|..++..+++....
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEE
Confidence 99997788888777789999999864332222233345567888753 34445545668899999877665443
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.61 E-value=3.5e-05 Score=80.98 Aligned_cols=234 Identities=13% Similarity=0.094 Sum_probs=145.3
Q ss_pred CeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC
Q 008050 288 PLSGCSYSHD--GNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADR-----TARLWNTDGS 360 (579)
Q Consensus 288 ~I~~~~~spd--g~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg-----~I~iwd~~~~ 360 (579)
.-.+++|+++ +..|+++...+.|+.++..++..... ........+++|+++++ |+.+...+ .+..++..+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 44555554448999999877765543 33455689999999999 44444321 2333332222
Q ss_pred ee--EEEecccCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCcEE-EEEe-cCCCCeEEEEEcCCCCEE-EEEeCCCe
Q 008050 361 LL--NTFQGHLDRLARMAFHP-SGKYLGTTSFDKTWRLWDVDTGVEL-LLQE-GHSRSVYGIAFHPDGSLA-ASCGLDAL 434 (579)
Q Consensus 361 ~~--~~~~~h~~~I~~l~~sp-~~~~l~s~s~dg~I~lwd~~~~~~~-~~~~-~~~~~V~~l~~spdg~~l-~sg~~dg~ 434 (579)
.. ..+. .......+++++ +|.++++-..++.|+.+|..++... .... +....-..++|+++++.| ++-...+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 1222 234457788999 6665555556789999999877652 2222 222334579999999844 55556789
Q ss_pred EEEEeCC--CCeE--EEEEecC---------------CCCeEEEEE---------cCCCCEEEEEeCCCcEEEEECCCCc
Q 008050 435 ARVWDLR--TGRS--ILALEGH---------------VKPVLGISF---------SPNGYHLATGGEDNTCRIWDLRKRK 486 (579)
Q Consensus 435 I~iwd~~--~~~~--~~~~~~~---------------~~~I~si~~---------sp~g~~l~tgs~Dg~I~iwDl~~~~ 486 (579)
|+.+++. ++.. ...+.+. -.....+++ ..+|.++++-...+.|+.++. ++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 9998865 3321 1222221 123567999 777877777777889999985 553
Q ss_pred eeEEEeCC------------------CCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 487 SLYVIPAH------------------SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 487 ~~~~~~~~------------------~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
+.++.+. -.....|++++.++.++++-..++.|+.+++.
T Consensus 376 -v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 -VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3333321 12356788884457777776677788877653
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.53 E-value=0.00011 Score=82.74 Aligned_cols=225 Identities=11% Similarity=-0.041 Sum_probs=146.8
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCC-----eeEEEecccCCeEEEEEecC
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVA-TSSADRTARLWNTDGS-----LLNTFQGHLDRLARMAFHPS 380 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-s~s~dg~I~iwd~~~~-----~~~~~~~h~~~I~~l~~sp~ 380 (579)
...|+..++........+ .....+..|+|++....|+ +-...+.|+.+++++. ....+.........|++...
T Consensus 403 ~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp BSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 345677777655443333 3456788999998655555 4445678888887763 23333334566788999987
Q ss_pred CCEEE-EEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecCCCCeE
Q 008050 381 GKYLG-TTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL--DALARVWDLRTGRSILALEGHVKPVL 457 (579)
Q Consensus 381 ~~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~I~ 457 (579)
+..|+ +-...+.|.+.++..................|+++|.+.+|+.+.. .+.|...++........+........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence 75555 4456789999999876655555455567889999997555555543 37899999875554444444446789
Q ss_pred EEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeCC--CCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe
Q 008050 458 GISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPAH--SNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 458 si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~~--~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 534 (579)
.|++++.+..|+.+. ..+.|..+|+........+... -.....|++. +++++++-...+.|...+..+++.+..+
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 999997666666554 5678999998654443333332 2234456664 4677777777889999997777655544
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.47 E-value=0.00019 Score=80.95 Aligned_cols=225 Identities=10% Similarity=-0.029 Sum_probs=146.5
Q ss_pred eCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEE-EEeCCCeEEEEECCCC----cEEEEEecCCCCeEEEEEcC
Q 008050 347 SADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLG-TTSFDKTWRLWDVDTG----VELLLQEGHSRSVYGIAFHP 421 (579)
Q Consensus 347 s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~-s~s~dg~I~lwd~~~~----~~~~~~~~~~~~V~~l~~sp 421 (579)
+....|+..++++.....+......+..++|++.+..|+ +-...+.|+.+++... ...............|++.+
T Consensus 401 an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp ECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred ccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 344668888877666656666667788999998655555 4445688999998753 22333333445677899988
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCceeEEEeCCCCCe
Q 008050 422 DGS-LAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG-ED-NTCRIWDLRKRKSLYVIPAHSNLI 498 (579)
Q Consensus 422 dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~D-g~I~iwDl~~~~~~~~~~~~~~~V 498 (579)
.+. ++++-...+.|.+.++........+.........|++.|.+.+|+... .. +.|.+.++........+...-...
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P 560 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence 664 555556778999999976554444444555688999999755555554 33 689999986544444444444678
Q ss_pred EEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecC--CCCcEEEEEEcCCCCEEEEEE-cCCeEEEEEcCCCCcc
Q 008050 499 SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSG--HEAKVTSLDIHPDEQSIATVS-HDRWIKLWSTRNKGDE 573 (579)
Q Consensus 499 ~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~~~~~~ 573 (579)
..|++++.++.++++-...+.|..+++........+.. .-....+|++. +.+|+... ..+.|...+..+++..
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 89999987777777767788999999865433333322 22345677764 34555554 5577888876666543
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.47 E-value=9.7e-05 Score=71.41 Aligned_cols=200 Identities=13% Similarity=0.133 Sum_probs=134.0
Q ss_pred EEeCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEeCCCCeeEEEec-ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q 008050 323 ALKGHTERATDVTFSPVSNHVA-TSSADRTARLWNTDGSLLNTFQG-HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT 400 (579)
Q Consensus 323 ~l~~h~~~V~~l~~sp~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~-h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~ 400 (579)
.+.+-...+..++|+|+++.|+ +...++.|...|.+++.+..+.- .....-.+++.+++.++++.-.++.+.++++..
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 3445666899999999876555 56778899999988887777642 235678899998888777766778999998865
Q ss_pred CcEE---EEEe------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCeEEEEEe-------cCCCCeEEEEE
Q 008050 401 GVEL---LLQE------GHSRSVYGIAFHPDGSLAASCGLDALARVWDLR---TGRSILALE-------GHVKPVLGISF 461 (579)
Q Consensus 401 ~~~~---~~~~------~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~---~~~~~~~~~-------~~~~~I~si~~ 461 (579)
...+ .... ..+...-.|+|++.++.|+++...+...+|.++ ....+..+. .+...+.++++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~ 180 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF 180 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence 4421 2221 234457899999998777666665544555443 111122221 13345789999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCceeEEEeCCC---------CCeEEEEEeeCCCeEEEEEECCCEEEEEEC
Q 008050 462 SPN-GYHLATGGEDNTCRIWDLRKRKSLYVIPAHS---------NLISQVKFEPQEGYFLVTGSYDMTVKVWSG 525 (579)
Q Consensus 462 sp~-g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~---------~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~ 525 (579)
+|. +++++.+..++.|.++|.. ++.+..+.... ..--.|+|.++ |+++++ +.-+.+++|.-
T Consensus 181 dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 181 NQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp ETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred cCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence 994 5566666677889999965 66666655432 24678999997 554444 66677777753
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.47 E-value=2e-06 Score=95.72 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=141.4
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------cEEEEeCCCCee---EEEe-cccCCeEEEEEecCCCEEEEEeC-CCeEEE
Q 008050 333 DVTFSP-VSNHVATSSADR-----------TARLWNTDGSLL---NTFQ-GHLDRLARMAFHPSGKYLGTTSF-DKTWRL 395 (579)
Q Consensus 333 ~l~~sp-~~~~l~s~s~dg-----------~I~iwd~~~~~~---~~~~-~h~~~I~~l~~sp~~~~l~s~s~-dg~I~l 395 (579)
++++.+ ++++++.|+.++ .+.+||...... ..+. .+.....++++..+++.+++|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 788888887643 578898654322 2222 22333345777889999999884 468999
Q ss_pred EECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCeEEEEE----ecCCCCeEEEEEcCC
Q 008050 396 WDVDTGVELLLQEGHS-RSVYGIAFHPDGSLAASCG-LD-----ALARVWDLRTGRSILAL----EGHVKPVLGISFSPN 464 (579)
Q Consensus 396 wd~~~~~~~~~~~~~~-~~V~~l~~spdg~~l~sg~-~d-----g~I~iwd~~~~~~~~~~----~~~~~~I~si~~sp~ 464 (579)
||..++........+. ..-.++++.++|++++.|+ .+ ..+.+||..+++-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998875544322221 2223556777899999998 44 56899999887633220 000000000112345
Q ss_pred CCEEEEEeCCC---------cEEEEECCCCceeEEEeCCC---------CCeEEEEEeeCCCeEEEEEECCC--------
Q 008050 465 GYHLATGGEDN---------TCRIWDLRKRKSLYVIPAHS---------NLISQVKFEPQEGYFLVTGSYDM-------- 518 (579)
Q Consensus 465 g~~l~tgs~Dg---------~I~iwDl~~~~~~~~~~~~~---------~~V~~v~~sp~~~~~l~sgs~dg-------- 518 (579)
++.++.|+.+| .+..||..+.........+. ..-..+.|...++.+++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 55556665444 46788887665433322211 12344555444578888888543
Q ss_pred ---EEEEEECCCCeEEEEe--cCCCCcE-EEEEEcCCCCEEEEEEcC-----------CeEEEEEcCCC
Q 008050 519 ---TVKVWSGRDFKLVKSL--SGHEAKV-TSLDIHPDEQSIATVSHD-----------RWIKLWSTRNK 570 (579)
Q Consensus 519 ---~I~iwd~~~~~~~~~l--~~h~~~V-~~l~~s~dg~~L~s~s~D-----------g~I~iW~~~~~ 570 (579)
.|.+||..+....... ..+.... .++.+.++|++++.||.+ ..+.+||..+.
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 6888887766544332 2222222 344567899999999865 46889987653
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=0.00015 Score=76.78 Aligned_cols=242 Identities=11% Similarity=0.037 Sum_probs=145.4
Q ss_pred CeeEEEEcCC-C-CEEEEEecCCeEEEEeCCCCeeEEEEeCC---CCCeEEEEE-------ccCCCEEEEEeCCC-----
Q 008050 288 PLSGCSYSHD-G-NLLATSSLSGVVKIWSMPRLQKFSALKGH---TERATDVTF-------SPVSNHVATSSADR----- 350 (579)
Q Consensus 288 ~I~~~~~spd-g-~~latgs~dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~-------sp~~~~l~s~s~dg----- 350 (579)
.-..|+|+|. + +++++....+.|++.|..++.....+... ......|+| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568899983 4 44444444567888998887766554432 235899999 99999777776654
Q ss_pred --cEEEEeCCC--Cee-----EEEecccCCeEEEEEecCCCE-EEEEeCCCeEEEEECC-------CCcE----------
Q 008050 351 --TARLWNTDG--SLL-----NTFQGHLDRLARMAFHPSGKY-LGTTSFDKTWRLWDVD-------TGVE---------- 403 (579)
Q Consensus 351 --~I~iwd~~~--~~~-----~~~~~h~~~I~~l~~sp~~~~-l~s~s~dg~I~lwd~~-------~~~~---------- 403 (579)
.|.+++... ... ..+.. ......++++|++.+ +++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665332 221 22222 234567889995554 4555567889999997 4543
Q ss_pred ---EEEEecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeC--CCCeE--EEEEecC---C------------CCeE-EE
Q 008050 404 ---LLLQEGHSRSVYGIAFHPDGSLA-ASCGLDALARVWDL--RTGRS--ILALEGH---V------------KPVL-GI 459 (579)
Q Consensus 404 ---~~~~~~~~~~V~~l~~spdg~~l-~sg~~dg~I~iwd~--~~~~~--~~~~~~~---~------------~~I~-si 459 (579)
.....+.....+.|+|+|+|++| ++-.....|+.++. ..+.. ...+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 11122333456899999999954 44456778888654 33322 1222221 0 1234 45
Q ss_pred EEc-------CCCCEEEEEeCCCcEEEEECCCCceeEEEeCC------------------------CCCeEEEEEeeCCC
Q 008050 460 SFS-------PNGYHLATGGEDNTCRIWDLRKRKSLYVIPAH------------------------SNLISQVKFEPQEG 508 (579)
Q Consensus 460 ~~s-------p~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~------------------------~~~V~~v~~sp~~~ 508 (579)
+.. .+|.++++-...+.|+.++ .++. +.++-+. -.....|+++++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 554 4566666666788999998 4553 4444321 02256778887546
Q ss_pred eEEEEEECCCEEEEEECCCCeEEE
Q 008050 509 YFLVTGSYDMTVKVWSGRDFKLVK 532 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~~~~~~ 532 (579)
.++++-..++.|+.+++.....+.
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC---
T ss_pred EEEEEeCCCCEEEEEECCCCcccc
Confidence 666666667788888776554443
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.40 E-value=0.0051 Score=67.58 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=101.9
Q ss_pred CCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeeE
Q 008050 287 RPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA--DRTARLWNTDGSLLN 363 (579)
Q Consensus 287 ~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~--dg~I~iwd~~~~~~~ 363 (579)
.....+++...+. ++++-...+.|.+.++........+...-.....|++.|...+|+.+.. .+.|...++++....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 3466888887654 5555556788999998755433333344456789999997666666553 567888888887666
Q ss_pred EEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 008050 364 TFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT 442 (579)
Q Consensus 364 ~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~ 442 (579)
.+.........+++.+++..|+.+. ..+.|..+|+...... .+.........+++.. +.++++-...+.|...|..+
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence 6655666788999999877666665 4678999998765442 2333334456777654 33444444466777766544
Q ss_pred C
Q 008050 443 G 443 (579)
Q Consensus 443 ~ 443 (579)
+
T Consensus 238 g 238 (628)
T 4a0p_A 238 G 238 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.00024 Score=75.21 Aligned_cols=239 Identities=17% Similarity=0.155 Sum_probs=147.3
Q ss_pred eEEEEEccC-CCEEEEE-eCCCcEEEEeCCCCeeEEEeccc----CCeEEEEE-------ecCCCEEEEEeCCC------
Q 008050 331 ATDVTFSPV-SNHVATS-SADRTARLWNTDGSLLNTFQGHL----DRLARMAF-------HPSGKYLGTTSFDK------ 391 (579)
Q Consensus 331 V~~l~~sp~-~~~l~s~-s~dg~I~iwd~~~~~~~~~~~h~----~~I~~l~~-------sp~~~~l~s~s~dg------ 391 (579)
...|+|+|. ...|+.+ ...+.|++.|..++.+..+.... .....++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 468999983 4444444 44577889998887777765432 35789999 99999777776654
Q ss_pred -eEEEEECCC-CcEE-----EEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-------CCeE-----------
Q 008050 392 -TWRLWDVDT-GVEL-----LLQEGHSRSVYGIAFHP-DGSLAASCGLDALARVWDLR-------TGRS----------- 445 (579)
Q Consensus 392 -~I~lwd~~~-~~~~-----~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~I~iwd~~-------~~~~----------- 445 (579)
.|.+++... +... ..... ......++++| ++.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 366676443 1111 11111 12345778999 55566667788899999987 5543
Q ss_pred EEE-Ee-cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCce--eEEEeCC---C------------CCeE-EEE
Q 008050 446 ILA-LE-GHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLR--KRKS--LYVIPAH---S------------NLIS-QVK 502 (579)
Q Consensus 446 ~~~-~~-~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~--~~~~--~~~~~~~---~------------~~V~-~v~ 502 (579)
... +. ........|+|+|+|++|+.+ +..+.|+.+|.. .+.. ...+-+. . .... .+.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 112 22 223446899999999965555 466788886653 2221 1222211 0 1233 444
Q ss_pred Eee------CCCeEEEEEECCCEEEEEECCCCeEEEEecCC------------------------CCcEEEEEEcCC-CC
Q 008050 503 FEP------QEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGH------------------------EAKVTSLDIHPD-EQ 551 (579)
Q Consensus 503 ~sp------~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h------------------------~~~V~~l~~s~d-g~ 551 (579)
... ..+.++++-..++.|+.++ .++. +.++.+. -.....|+++++ |.
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 441 2467777777789999998 4554 3333221 123678999997 66
Q ss_pred EEEEEEcCCeEEEEEcCCCCc
Q 008050 552 SIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 552 ~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
++++=..+..|+.+++.....
T Consensus 458 lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEETTTTEEEEEEECCCC-
T ss_pred EEEEeCCCCEEEEEECCCCcc
Confidence 555555678999999876443
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.32 E-value=0.0012 Score=72.61 Aligned_cols=281 Identities=10% Similarity=-0.003 Sum_probs=155.0
Q ss_pred CCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeC--CCcEEEEeCCCCeeE
Q 008050 287 RPLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSA--DRTARLWNTDGSLLN 363 (579)
Q Consensus 287 ~~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~--dg~I~iwd~~~~~~~ 363 (579)
.....+++...++ ++++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+.+|....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 4678899998555 5555566789999998765433333344456789999998776666654 357777778886555
Q ss_pred EEe-cccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 364 TFQ-GHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 364 ~~~-~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
.+. ......+.+++.+++..|+.+. ..+.|..+|+..........+.......|++..+ .++++-...+.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 543 3445678999998766666554 4577888888654332222211112233444433 222222233444444443
Q ss_pred CCeEEEEEe-----------------------------------------------------------------------
Q 008050 442 TGRSILALE----------------------------------------------------------------------- 450 (579)
Q Consensus 442 ~~~~~~~~~----------------------------------------------------------------------- 450 (579)
+++....+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 332111100
Q ss_pred -----------------------cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeC
Q 008050 451 -----------------------GHVKPVLGISFSPNGYHLATG-GEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQ 506 (579)
Q Consensus 451 -----------------------~~~~~I~si~~sp~g~~l~tg-s~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~ 506 (579)
.....+..|+|.+.+..|+.+ ...+.|+.+++........+.........++++..
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 001123344454422222222 23445555555432222222222245667888876
Q ss_pred CCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEc--CCeEEEEEcC
Q 008050 507 EGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSH--DRWIKLWSTR 568 (579)
Q Consensus 507 ~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~--Dg~I~iW~~~ 568 (579)
+++++++-+..+.|.+.++........+...-....+|++.|...+|+.+.. .+.|...++.
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 6778887777889999998654322222233456789999997556655543 2456655554
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.31 E-value=0.0016 Score=71.48 Aligned_cols=202 Identities=10% Similarity=0.068 Sum_probs=128.0
Q ss_pred CCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCee-EEEEeCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCee
Q 008050 286 DRPLSGCSYSHDGNLLATSS-LSGVVKIWSMPRLQK-FSALKGHTERATDVTFSPVSNHVAT-SSADRTARLWNTDGSLL 362 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs-~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~sp~~~~l~s-~s~dg~I~iwd~~~~~~ 362 (579)
-+...+++|++.++.|+... ..+.|..+++..... ...+...-.....+++.+.+..|+. -...+.|.+.+.++...
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34577899998776666554 467899998876532 2233333357889999986665544 45578999999998766
Q ss_pred EEEe-cccCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEE
Q 008050 363 NTFQ-GHLDRLARMAFHPSGKYLGTTSF--DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASC-GLDALARVW 438 (579)
Q Consensus 363 ~~~~-~h~~~I~~l~~sp~~~~l~s~s~--dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg-~~dg~I~iw 438 (579)
..+. ........+++.|.+.+|+.+.. .+.|...++................+.|++++++..|+.+ ...+.|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~ 198 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 198 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence 5554 44566789999998766666654 4678888876554444443445567899999876555544 456789999
Q ss_pred eCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 008050 439 DLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488 (579)
Q Consensus 439 d~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~ 488 (579)
|+..........+......+|++..+ ..+++-...+.|...|..+++..
T Consensus 199 ~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 199 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp SSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 98754433322222223456777655 44444446778999998766543
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.30 E-value=0.00066 Score=68.25 Aligned_cols=229 Identities=10% Similarity=0.051 Sum_probs=133.0
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEe---CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCee
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALK---GHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLL 362 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~ 362 (579)
...+.++.|++ +..++ ++..|.|+. ..+.++.-..+. .+...+..+.+.+++..++.+ .+|.|..-.-.++.-
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW 154 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNW 154 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSE
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCC
Confidence 34678888976 44444 455665543 333344433332 234567888887776665554 456543322223322
Q ss_pred EE-EecccCCeEEEEEecCCCEEEEEeCCCeEEEEEC--CCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 008050 363 NT-FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV--DTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWD 439 (579)
Q Consensus 363 ~~-~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~--~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd 439 (579)
.. .......+..+.+.+++.+++++...+.++-+|- .+.+.+ .......+..+.+.+++.+++ ++.+|.+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSD 231 (327)
T ss_dssp EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEec
Confidence 22 2344567889999998887766654444444442 222222 234556788999999887654 45678887765
Q ss_pred CCCCeEEEEEec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC---CCCCeEEEEEeeCCCeEEE
Q 008050 440 LRTGRSILALEG----HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA---HSNLISQVKFEPQEGYFLV 512 (579)
Q Consensus 440 ~~~~~~~~~~~~----~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~---~~~~V~~v~~sp~~~~~l~ 512 (579)
...++....+.. +...+.++.+.+++..++++ .+|.| ++....++.-..+.. ....+..+.|..+ +. ++
T Consensus 232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~-~~ 307 (327)
T 2xbg_A 232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQ-GF 307 (327)
T ss_dssp TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET-TE-EE
T ss_pred CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC-Cc-eE
Confidence 333443333321 22358899999887766665 46766 444455554444432 2345788888753 44 55
Q ss_pred EEECCCEEEEEEC
Q 008050 513 TGSYDMTVKVWSG 525 (579)
Q Consensus 513 sgs~dg~I~iwd~ 525 (579)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 6677898877653
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.22 E-value=0.00039 Score=69.83 Aligned_cols=193 Identities=15% Similarity=0.269 Sum_probs=129.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecC----CC---EEEEEeC---CCeEEEEEC--CCCcEEEE
Q 008050 339 VSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPS----GK---YLGTTSF---DKTWRLWDV--DTGVELLL 406 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~----~~---~l~s~s~---dg~I~lwd~--~~~~~~~~ 406 (579)
...+++.....+-+.+||++++.+..+.. +.++.+.+-|. |+ ++++... +++|.+|++ .++. +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34566667778899999999999988764 56677766652 32 2333333 578999977 3443 333
Q ss_pred Eec------CC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC-------CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 407 QEG------HS-RSVYGIAF--HPD-GS-LAASCGLDALARVWDLR-------TGRSILALEGHVKPVLGISFSPNGYHL 468 (579)
Q Consensus 407 ~~~------~~-~~V~~l~~--spd-g~-~l~sg~~dg~I~iwd~~-------~~~~~~~~~~~~~~I~si~~sp~g~~l 468 (579)
... .. ..++.+|+ ++. +. ++++...+|.+..|++. +.+.+.+|... +.+-.+...+...+|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence 311 11 56777887 664 43 68888889999999883 33566777654 468888899888899
Q ss_pred EEEeCCCcEEEEECC-----CCceeEEEeC-C-CCCeEEEEEee--CCCeEEEEEE-CCCEEEEEECC-CCeEEEEec
Q 008050 469 ATGGEDNTCRIWDLR-----KRKSLYVIPA-H-SNLISQVKFEP--QEGYFLVTGS-YDMTVKVWSGR-DFKLVKSLS 535 (579)
Q Consensus 469 ~tgs~Dg~I~iwDl~-----~~~~~~~~~~-~-~~~V~~v~~sp--~~~~~l~sgs-~dg~I~iwd~~-~~~~~~~l~ 535 (579)
+.+-++.-|..||.. +++.+..+.. + ...+..|++-+ ++..||++++ .++.+.+||.. +.+.+..|.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 999998777777755 3445544422 2 13578888753 3233454444 68899999996 777777774
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.18 E-value=0.0038 Score=68.53 Aligned_cols=226 Identities=14% Similarity=0.017 Sum_probs=149.4
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEEEe-CCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCeeEEEec-ccCCeEEEE
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFSALK-GHTERATDVTFSPVSNHVATS-SADRTARLWNTDGSLLNTFQG-HLDRLARMA 376 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~s~-s~dg~I~iwd~~~~~~~~~~~-h~~~I~~l~ 376 (579)
+|+.+ ..+.|+..++.+......+. ..-..+..|+|++.+..|+.+ ..++.|..++.++.....+.. .......++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 46788888987655433332 223468899999976666555 457889999988765444433 334578899
Q ss_pred EecCCCEEE-EEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEecCC
Q 008050 377 FHPSGKYLG-TTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCG--LDALARVWDLRTGRSILALEGHV 453 (579)
Q Consensus 377 ~sp~~~~l~-s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~ 453 (579)
+...+..|+ +-...+.|.+.++..................|+++|....|+.+. ..+.|...++......... ...
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCC
Confidence 987665554 444568899999976654444434445678999998555555554 3578888888654433333 344
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE
Q 008050 454 KPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL 530 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 530 (579)
.....|++++++..|+.+. ..+.|..+|+..... ..+.........+++. ++.++++-...+.|...|..+++.
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCc
Confidence 5688999999766666654 567899999865433 3333333445677776 366777766789999999766643
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.18 E-value=0.00067 Score=68.13 Aligned_cols=192 Identities=14% Similarity=0.214 Sum_probs=128.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccC----CC---EEEEEe-C--CCcEEEEeCC--CCeeEE
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPV----SN---HVATSS-A--DRTARLWNTD--GSLLNT 364 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~----~~---~l~s~s-~--dg~I~iwd~~--~~~~~~ 364 (579)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-+. |+ ++++.. . +++|.+|+++ ...+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456666667889999999 8888888764 56777766652 22 223333 3 5789999753 444554
Q ss_pred Eec------cc-CCeEEEEE--ecC-CC-EEEEEeCCCeEEEEECC---CC----cEEEEEecCCCCeEEEEEcCCCCEE
Q 008050 365 FQG------HL-DRLARMAF--HPS-GK-YLGTTSFDKTWRLWDVD---TG----VELLLQEGHSRSVYGIAFHPDGSLA 426 (579)
Q Consensus 365 ~~~------h~-~~I~~l~~--sp~-~~-~l~s~s~dg~I~lwd~~---~~----~~~~~~~~~~~~V~~l~~spdg~~l 426 (579)
+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. .+ +.+..+. ..+.+-.+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeE
Confidence 422 11 56677887 664 43 78888899999999883 22 3444443 34578888999888899
Q ss_pred EEEeCCCeEEEEeCC-----CCeEEEEEe-cC-CCCeEEEEEc--CCCC-EEEEEe-CCCcEEEEECC-CCceeEEEe
Q 008050 427 ASCGLDALARVWDLR-----TGRSILALE-GH-VKPVLGISFS--PNGY-HLATGG-EDNTCRIWDLR-KRKSLYVIP 492 (579)
Q Consensus 427 ~sg~~dg~I~iwd~~-----~~~~~~~~~-~~-~~~I~si~~s--p~g~-~l~tgs-~Dg~I~iwDl~-~~~~~~~~~ 492 (579)
+.+-.+.-|..||.+ +++.+..+. ++ ...+..|++. ++++ +|++++ .+++..+||.. +.+.+..|.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 999998878777855 345554442 22 2368888884 4544 566655 67899999996 566666664
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.14 E-value=0.00079 Score=67.01 Aligned_cols=205 Identities=11% Similarity=0.093 Sum_probs=133.2
Q ss_pred eCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCeeEEEe-cc-------cCCeEEEEE---ecCCCEEEEEeC---
Q 008050 325 KGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDGSLLNTFQ-GH-------LDRLARMAF---HPSGKYLGTTSF--- 389 (579)
Q Consensus 325 ~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~-~h-------~~~I~~l~~---sp~~~~l~s~s~--- 389 (579)
.....--.++.|++....|+.++ ..|.|..|+..+.....+. .. ...+..+.| .++++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33444456789988767766666 7899999998754333331 11 113578999 688777775442
Q ss_pred ----------CCeEEEEECC---CCcEEEEEec-------------CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEeCCC
Q 008050 390 ----------DKTWRLWDVD---TGVELLLQEG-------------HSRSVYGIAFHPDGSLAASCGLD-ALARVWDLRT 442 (579)
Q Consensus 390 ----------dg~I~lwd~~---~~~~~~~~~~-------------~~~~V~~l~~spdg~~l~sg~~d-g~I~iwd~~~ 442 (579)
+..|..||+. +++.+....- -......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 6789999999 7766554431 11347899999999999999988 8888888654
Q ss_pred CeEEEEEe--c----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEe--CC---CCCeEEE-EEeeCCCe
Q 008050 443 GRSILALE--G----HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL-YVIP--AH---SNLISQV-KFEPQEGY 509 (579)
Q Consensus 443 ~~~~~~~~--~----~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~-~~~~--~~---~~~V~~v-~~sp~~~~ 509 (579)
. .+..+. . .....+.|+++|+|+.|++....|.|..+|+.+.... .... +. -.....+ ....+ +.
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~-G~ 246 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG-NE 246 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET-TE
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC-CE
Confidence 4 333221 1 1123679999999999988877999999998843220 1111 21 1223443 33333 55
Q ss_pred E-EEEEECCCEEEEEECCCCeEE
Q 008050 510 F-LVTGSYDMTVKVWSGRDFKLV 531 (579)
Q Consensus 510 ~-l~sgs~dg~I~iwd~~~~~~~ 531 (579)
. +++.+..+.+.+.+...|+..
T Consensus 247 vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEEcCCCCEEEEECCCCccee
Confidence 5 666666777777776666543
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.11 E-value=7.4e-06 Score=91.55 Aligned_cols=226 Identities=10% Similarity=-0.029 Sum_probs=134.9
Q ss_pred CCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC----CcEEEEEecCCCCeEEEEEcC-
Q 008050 348 ADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDT----GVELLLQEGHSRSVYGIAFHP- 421 (579)
Q Consensus 348 ~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~----~~~~~~~~~~~~~V~~l~~sp- 421 (579)
..+.|+..++.+.....+......+..++|++.+..|+.+. ..+.|+.+++.+ ................|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 34567777776655444444445677899998777666654 457899999875 222111111122345678875
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCceeEEEeCCCCCeE
Q 008050 422 DGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG-ED-NTCRIWDLRKRKSLYVIPAHSNLIS 499 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~D-g~I~iwDl~~~~~~~~~~~~~~~V~ 499 (579)
.++++++-...+.|.++++........+.........|+++|.+.+|+... .. +.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 445555555678999999876544433333334567889998655555443 33 6888888753322222222234467
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEec--CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccc
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLS--GHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEH 574 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~ 574 (579)
.|+|+++++.++++-+..+.|.++++........+. ........|++..+ .++++....+.|..++..+++...
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 799999878888887788899999986433222222 11223455666543 334444456789988876655443
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.11 E-value=7.9e-06 Score=91.30 Aligned_cols=238 Identities=11% Similarity=-0.028 Sum_probs=142.3
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC----CeeE-EEecccCCeEEEEEecC
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS-ADRTARLWNTDG----SLLN-TFQGHLDRLARMAFHPS 380 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s-~dg~I~iwd~~~----~~~~-~~~~h~~~I~~l~~sp~ 380 (579)
.+.|+..++.+......+. ....+..|+|++.+..|+.+. ..+.|+.+++++ .... .+.........+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4567777877655443333 234567899998777666654 457899998765 2221 12122234567888754
Q ss_pred CC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEecCCCCeE
Q 008050 381 GK-YLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL--DALARVWDLRTGRSILALEGHVKPVL 457 (579)
Q Consensus 381 ~~-~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~I~ 457 (579)
+. ++++-...+.|.++++..................|+++|.+.+|+.+.. .+.|..+++........+.......+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 44 4444456788999998766544444333345678899986555554442 26788887754332222222234467
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeC--CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEe
Q 008050 458 GISFSPNGYHL-ATGGEDNTCRIWDLRKRKSLYVIPA--HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSL 534 (579)
Q Consensus 458 si~~sp~g~~l-~tgs~Dg~I~iwDl~~~~~~~~~~~--~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l 534 (579)
.|+|++++..| ++-+..+.|.++|+........+.. .......|++. ++.++++....+.|..++..+++.+..+
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--TTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE--CCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 89999865544 4445667899999864332222221 11223456665 3567777777889999998888888777
Q ss_pred cCCCCcEEEEEEc
Q 008050 535 SGHEAKVTSLDIH 547 (579)
Q Consensus 535 ~~h~~~V~~l~~s 547 (579)
.......++|.+.
T Consensus 622 ~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 622 AENLLSPEDMVLF 634 (699)
T ss_dssp CTTCSSCCCCCBC
T ss_pred ecCCCCCcEEEEe
Confidence 5433344555443
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.09 E-value=0.0025 Score=64.80 Aligned_cols=222 Identities=19% Similarity=0.202 Sum_probs=126.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe------cccCCeEEEEEecC---CCEEEEEeC-C-----Ce
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ------GHLDRLARMAFHPS---GKYLGTTSF-D-----KT 392 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~------~h~~~I~~l~~sp~---~~~l~s~s~-d-----g~ 392 (579)
-..-..++|.|+|.+++ +..+|.|.+++ ++.. ..+. ........++|+|+ +..|+++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR-EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE-TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE-CCCc-cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998554 55679999998 5432 2111 12356789999998 555555543 2 67
Q ss_pred EEEEECCCCc-----EEEE-Ee---cCCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCC-------
Q 008050 393 WRLWDVDTGV-----ELLL-QE---GHSRSVYGIAFHPDGSLAASCGL-------------DALARVWDLRTG------- 443 (579)
Q Consensus 393 I~lwd~~~~~-----~~~~-~~---~~~~~V~~l~~spdg~~l~sg~~-------------dg~I~iwd~~~~------- 443 (579)
|..|+...+. .+.. +. ........++|.|||.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876431 1111 21 11123457999999987776442 256666665430
Q ss_pred ------e-EEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCc--------EEEEECCC----------------CceeEEE
Q 008050 444 ------R-SILALEGHVKPVLGISFSP-NGYHLATGGEDNT--------CRIWDLRK----------------RKSLYVI 491 (579)
Q Consensus 444 ------~-~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg~--------I~iwDl~~----------------~~~~~~~ 491 (579)
. .+. ..++ .....++|++ +|.++++-...+. |.+..-.. ..++..+
T Consensus 187 ~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVY-SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEE-EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEE-EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 1 111 1223 2366789999 6665555443333 33332111 0122333
Q ss_pred eCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe----E--EEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 492 PAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK----L--VKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 492 ~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~----~--~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
.. ......++|. .+.++++....+.|...++.... . ...+-.....+..+++.|||.++++..
T Consensus 265 ~~-~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQ-GFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TT-CCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CC-CCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22 2345677773 36777766667788887765321 1 122212235789999999997766654
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.09 E-value=0.0079 Score=61.07 Aligned_cols=227 Identities=16% Similarity=0.100 Sum_probs=130.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eeEEE---ecccCCeEEEEEecC---CCEEEEEeC----C----Ce
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGS-LLNTF---QGHLDRLARMAFHPS---GKYLGTTSF----D----KT 392 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-~~~~~---~~h~~~I~~l~~sp~---~~~l~s~s~----d----g~ 392 (579)
-.....++|.|+|. |+++..+|.|++++.++. .+..+ .........++|+|+ +..|+++.. + +.
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34578999999987 455566699999986554 11111 112356789999997 555555443 3 67
Q ss_pred EEEEECCCC------cE-EEE-Ee-cCCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCC-------
Q 008050 393 WRLWDVDTG------VE-LLL-QE-GHSRSVYGIAFHPDGSLAASCGL-------------DALARVWDLRTG------- 443 (579)
Q Consensus 393 I~lwd~~~~------~~-~~~-~~-~~~~~V~~l~~spdg~~l~sg~~-------------dg~I~iwd~~~~------- 443 (579)
|..|+.... .. +.. +. ........|.|.|||.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887654 11 111 11 11123457999999987776542 256666665432
Q ss_pred --eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCC---cEEEEECCC----------------CceeEEEeCCCCCeEEE
Q 008050 444 --RSILALEGHVKPVLGISFSP-NGYHLATGGEDN---TCRIWDLRK----------------RKSLYVIPAHSNLISQV 501 (579)
Q Consensus 444 --~~~~~~~~~~~~I~si~~sp-~g~~l~tgs~Dg---~I~iwDl~~----------------~~~~~~~~~~~~~V~~v 501 (579)
..+. ..++. ....++|++ +|.++++-...+ .|.+..--. ..++..+.........+
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 1122 22333 356899999 666555433222 244332110 01233331122456778
Q ss_pred EEee------CCCeEEEEEECCCEEEEEECCCC-eEE--EEe-cCCCCcEEEEEEcCCCCEEEEEE
Q 008050 502 KFEP------QEGYFLVTGSYDMTVKVWSGRDF-KLV--KSL-SGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 502 ~~sp------~~~~~l~sgs~dg~I~iwd~~~~-~~~--~~l-~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
.|.. ..+.++++....+.|...++... +.. ..+ .+....+..+++.|||.+.++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8831 23677777667788998888743 322 233 23345789999999997666553
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.07 E-value=0.011 Score=69.47 Aligned_cols=279 Identities=10% Similarity=0.034 Sum_probs=159.0
Q ss_pred CCCeeEEEEcCC------CCEEEEEec-CCeEEEEeCCCCeeEEEEeC-CCCCeEEEEEcc--CCCEEEEEeCCCcEEEE
Q 008050 286 DRPLSGCSYSHD------GNLLATSSL-SGVVKIWSMPRLQKFSALKG-HTERATDVTFSP--VSNHVATSSADRTARLW 355 (579)
Q Consensus 286 ~~~I~~~~~spd------g~~latgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~sp--~~~~l~s~s~dg~I~iw 355 (579)
...|.|+++.+. ++++++|.+ |++|+|+++++.+.+....- ......++.+.. ...+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999864 479999998 99999999998777654332 122344444432 34578899999988766
Q ss_pred eCC---CCeeEE--EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeE-EEEEcCC--CCEEE
Q 008050 356 NTD---GSLLNT--FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVY-GIAFHPD--GSLAA 427 (579)
Q Consensus 356 d~~---~~~~~~--~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~-~l~~spd--g~~l~ 427 (579)
.++ +..... ..-...++.-..+...|..-+.+..+..+.+|.-+. ..... .-....+. ...|+.. ..-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s-~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFS-NVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEEEE-EBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEe-ccChHHhceEeccCcccCCCcEE
Confidence 643 322211 122234454444554555545555567777766543 32222 22222333 3345432 12344
Q ss_pred EEeCCCeEEEEeCCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeC--------------------------------
Q 008050 428 SCGLDALARVWDLRTGR--SILALEGHVKPVLGISFSPNGYHLATGGE-------------------------------- 473 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~si~~sp~g~~l~tgs~-------------------------------- 473 (579)
..+ ++.++|..+.... .+.++.- ...+..++++|..+.++.+..
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred EEc-CCceEEEEecccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 333 4558888765432 2222222 234677777775554443321
Q ss_pred -----------------CCcEEEEECCCCceeEEEeCCCC-CeEEEEE---eeCCCeEEEEEE----------CCCEEEE
Q 008050 474 -----------------DNTCRIWDLRKRKSLYVIPAHSN-LISQVKF---EPQEGYFLVTGS----------YDMTVKV 522 (579)
Q Consensus 474 -----------------Dg~I~iwDl~~~~~~~~~~~~~~-~V~~v~~---sp~~~~~l~sgs----------~dg~I~i 522 (579)
-+.|+++|-.+.+.+..+....+ .+.+++. ..+...+|+.|. ..|.|++
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v 868 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV 868 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence 12477788777777766654332 3444443 322346788776 3588999
Q ss_pred EECCCCeEEEEe-cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 523 WSGRDFKLVKSL-SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 523 wd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|++.++++.... ....+.|++++-- +| +|++|- ..+|++|++...+
T Consensus 869 f~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 869 FQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred EEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence 998655432221 1235778888743 35 454443 5789999998654
No 305
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.97 E-value=0.031 Score=62.74 Aligned_cols=268 Identities=7% Similarity=0.011 Sum_probs=154.1
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF 365 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 365 (579)
...|.++....+| .|.+|+.+| +..||..+.............|.++.. .+ ..|..++.+ -|..|+........+
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEe
Confidence 3468887777665 566677655 788998775433211112335777754 34 456667766 578888765555544
Q ss_pred ec-----ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecC-----CCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 366 QG-----HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGH-----SRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 366 ~~-----h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~-----~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
.. ....|.++....+|.+. +++. +.+..||..++......... ...|.++....++..|..|+. +-+
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lW-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIY-VGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEE-EEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEE-EEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 21 23457788777777644 4554 45888888776543322111 224888888777766555664 568
Q ss_pred EEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-------CCCCCeEEEEEeeCCC
Q 008050 436 RVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-------AHSNLISQVKFEPQEG 508 (579)
Q Consensus 436 ~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-------~~~~~V~~v~~sp~~~ 508 (579)
..||..+++...........|.++....+|.+. .|+.+ -+.++|..++....... .....|.++..+.+ +
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g 290 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-H 290 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-C
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-C
Confidence 889987765432211223458888888887654 45544 58889876654322211 12345888877764 3
Q ss_pred eEEEEEECCCEEEEEECCC-CeEEEEe----cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 509 YFLVTGSYDMTVKVWSGRD-FKLVKSL----SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 509 ~~l~sgs~dg~I~iwd~~~-~~~~~~l----~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
. |..|+..| +.++.... .+..... ......|.++....+|.+. .|+.+| +..++..
T Consensus 291 ~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~ 351 (758)
T 3ott_A 291 N-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDP 351 (758)
T ss_dssp C-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCT
T ss_pred C-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeeccc
Confidence 3 44556667 55543322 1211100 0123468888888777644 455555 5556544
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.96 E-value=0.0019 Score=65.73 Aligned_cols=217 Identities=17% Similarity=0.162 Sum_probs=120.3
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeE--EEEe---CCCCCeEEEEEccC---CCEEEEEeC-C-----CcEE
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKF--SALK---GHTERATDVTFSPV---SNHVATSSA-D-----RTAR 353 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~--~~l~---~h~~~V~~l~~sp~---~~~l~s~s~-d-----g~I~ 353 (579)
.-..++|.|+|+++++ ..+|.|++++ ++... ..+. ........|+|+|+ +..|+++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4568999999985554 5679999998 44321 1111 12457899999998 555555443 2 5677
Q ss_pred EEeCCCCe------e-EEEe---cccCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCC----------
Q 008050 354 LWNTDGSL------L-NTFQ---GHLDRLARMAFHPSGKYLGTTSF-------------DKTWRLWDVDT---------- 400 (579)
Q Consensus 354 iwd~~~~~------~-~~~~---~h~~~I~~l~~sp~~~~l~s~s~-------------dg~I~lwd~~~---------- 400 (579)
.|+.++.. + ..+. ........+.|.|+|.++++.+. .|.|..++...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 78765421 1 1122 11123468999999975555432 25677777653
Q ss_pred ----CcEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCe--------EEEEeCCCCe------------------EEEEE
Q 008050 401 ----GVELLLQEGHSRSVYGIAFHP-DGSLAASCGLDAL--------ARVWDLRTGR------------------SILAL 449 (579)
Q Consensus 401 ----~~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg~--------I~iwd~~~~~------------------~~~~~ 449 (579)
...+. ..++. ....++|++ ++.++++-...+. |.+. ..+. .+..+
T Consensus 189 ~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 189 RRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp CTTSCTTEE-EECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCccEE-EEcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 11121 12332 356789999 6665555433332 3332 2221 22233
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEEeCCCCCeEEEEEeeCCCeEEEEE
Q 008050 450 EGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS------LYVIPAHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 450 ~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~------~~~~~~~~~~V~~v~~sp~~~~~l~sg 514 (579)
. +......++| .+|.++++....+.|...++..... ...+......+..+++.|++ .++++.
T Consensus 265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~ 332 (352)
T 2ism_A 265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-ALYVTT 332 (352)
T ss_dssp T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-CEEEEE
T ss_pred C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-cEEEEE
Confidence 2 2234567777 4666666655667788887754321 12221223567888888874 444443
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.93 E-value=0.0024 Score=63.59 Aligned_cols=198 Identities=8% Similarity=0.044 Sum_probs=125.6
Q ss_pred ccCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCcEEEEEecC-----C--CCeEEEEE---cCCCCEEEEEeC-----
Q 008050 368 HLDRLARMAFHPSGKYLGTTS-FDKTWRLWDVDTGVELLLQEGH-----S--RSVYGIAF---HPDGSLAASCGL----- 431 (579)
Q Consensus 368 h~~~I~~l~~sp~~~~l~s~s-~dg~I~lwd~~~~~~~~~~~~~-----~--~~V~~l~~---spdg~~l~sg~~----- 431 (579)
....-.++.|++....|+.++ ..++|..||...+......... . ..+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 334446789998766666666 7899999999866444332222 1 13579999 688877776442
Q ss_pred --------CCeEEEEeCC---CCeEEEEEec-------------CCCCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCc
Q 008050 432 --------DALARVWDLR---TGRSILALEG-------------HVKPVLGISFSPNGYHLATGGED-NTCRIWDLRKRK 486 (579)
Q Consensus 432 --------dg~I~iwd~~---~~~~~~~~~~-------------~~~~I~si~~sp~g~~l~tgs~D-g~I~iwDl~~~~ 486 (579)
+..|..||+. +++.+....- .......++..++|+..++++.. +.|..++... +
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~ 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-K 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-C
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-C
Confidence 6789999999 7877655541 11247899999999999999988 8888888643 3
Q ss_pred eeEEEe--C----CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE--EEEec-CC---CCcEEEE-EEcCCCCE-
Q 008050 487 SLYVIP--A----HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL--VKSLS-GH---EAKVTSL-DIHPDEQS- 552 (579)
Q Consensus 487 ~~~~~~--~----~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~--~~~l~-~h---~~~V~~l-~~s~dg~~- 552 (579)
.+..+. . .....+.|.++|+ +++|++....|.+..+|+..... +..-. +. -.....+ ..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 333221 1 1223678999997 45555554499999999875332 21110 21 1123443 33447777
Q ss_pred EEEEEcCCeEEEEEc
Q 008050 553 IATVSHDRWIKLWST 567 (579)
Q Consensus 553 L~s~s~Dg~I~iW~~ 567 (579)
|++.+..+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 249 LVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEETTEEEEEECS
T ss_pred EEEcCCCCEEEEECC
Confidence 445555555555443
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.93 E-value=0.021 Score=56.44 Aligned_cols=231 Identities=14% Similarity=0.130 Sum_probs=149.7
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeeEEEecc
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG--SLLNTFQGH 368 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~h 368 (579)
+.-.+|..+.||.-. ...+.|||+++...++.+.- ...|..-.|-... .|+..+ +..|+-|++++ .+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 345688888888776 78999999999999988875 4577777887554 444433 36799999765 566666655
Q ss_pred c----CCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCC---CCEEEEEeC---
Q 008050 369 L----DRLARMAFHPSGKYLGTTSF-------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPD---GSLAASCGL--- 431 (579)
Q Consensus 369 ~----~~I~~l~~sp~~~~l~s~s~-------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spd---g~~l~sg~~--- 431 (579)
. ..|..-..+++.++++..+- .|.+.+|..+.+. ...+++|......+.+..+ ..+++.+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 45666777888887665442 3788899987653 3455577654433333221 123444433
Q ss_pred CCeEEEEeCCCC---e-----EEEE-Ee---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeE
Q 008050 432 DALARVWDLRTG---R-----SILA-LE---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS 499 (579)
Q Consensus 432 dg~I~iwd~~~~---~-----~~~~-~~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~ 499 (579)
.+.++|.++... . .... +. ....--.++..++.-..++.-+.-|.|.+||+.++.+++.-......|.
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 268999988432 1 1111 11 1233456788888777889999999999999999999998777666665
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
..+.+...+.+++ ....|.|.-..++.
T Consensus 306 ~ta~~~~~~Gi~~-Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 306 VTAPHEATAGIIG-VNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEGGGTEEEE-EETTCEEEEEEECT
T ss_pred EecccCCCCcEEE-EcCCCEEEEEEECc
Confidence 5555443333333 34566555544443
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.92 E-value=0.0014 Score=64.71 Aligned_cols=225 Identities=13% Similarity=0.083 Sum_probs=117.1
Q ss_pred CCCEEEEEe-cC-----CeEEEEeCCCCeeEEE--EeCCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCe--
Q 008050 297 DGNLLATSS-LS-----GVVKIWSMPRLQKFSA--LKGHTERATDVTFSPVSNHVATSSAD-----RTARLWNTDGSL-- 361 (579)
Q Consensus 297 dg~~latgs-~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~s~s~d-----g~I~iwd~~~~~-- 361 (579)
++.+++.|+ .+ ..+.+||..+.+-... +.........+. -++.+++.|+.+ ..+.+||.....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345666666 33 3688888876543221 111111112222 246677777754 468888865544
Q ss_pred -eEEEeccc-CCe-EEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEeCC
Q 008050 362 -LNTFQGHL-DRL-ARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGVELLLQEGHSRS-VYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 362 -~~~~~~h~-~~I-~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~~-V~~l~~spdg~~l~sg~~d 432 (579)
...+.... ... .++.. -++..++.|+.+ ..+.+||+.+.+-.......... -.++.. -++.+++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCC
Confidence 33332211 111 12222 256677777654 46889999887654433211111 112222 267777887765
Q ss_pred -----CeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEeCCCCC-eE
Q 008050 433 -----ALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRKSLYVIPAHSNL-IS 499 (579)
Q Consensus 433 -----g~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~~~~~~~~~~~~-V~ 499 (579)
..+.+||+.+.+-...-. ........+.+ ++++++.|+.+ ..+.+||+.+.+-...-...... -.
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 247 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV 247 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence 468899988775432211 11111222223 56777777754 46899999876533321111111 11
Q ss_pred EEEEeeCCCeEEEEEECC-----CEEEEEECCCCe
Q 008050 500 QVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFK 529 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~ 529 (579)
.+... ++.+++.|+.+ ..+.+||..+.+
T Consensus 248 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 248 GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22222 36777777765 468888887654
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.91 E-value=0.00095 Score=65.84 Aligned_cols=213 Identities=12% Similarity=0.075 Sum_probs=112.1
Q ss_pred CcEEEEeCCCCeeEEEecccC-CeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCc---EEEEEecC--CCCeEEEE
Q 008050 350 RTARLWNTDGSLLNTFQGHLD-RLARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGV---ELLLQEGH--SRSVYGIA 418 (579)
Q Consensus 350 g~I~iwd~~~~~~~~~~~h~~-~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~---~~~~~~~~--~~~V~~l~ 418 (579)
..+.+||........+..... ........-++..++.|+.+ ..+.+||+.+.. -....... ......+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 367888866554443332111 11111122356677777765 468999998876 33332111 11122222
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 008050 419 FHPDGSLAASCGLD-----ALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRK 486 (579)
Q Consensus 419 ~spdg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~ 486 (579)
+ ++.+++.|+.+ ..+.+||+.+.+-...-. .....-..+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 2 56777777754 368899988775332221 11111222222 67777777654 468899987764
Q ss_pred eeEEEeCCCCC-eEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeEEEE--ecCCCCcEEEEEEcCCCCEEEEEEc
Q 008050 487 SLYVIPAHSNL-ISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKLVKS--LSGHEAKVTSLDIHPDEQSIATVSH 558 (579)
Q Consensus 487 ~~~~~~~~~~~-V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~s~dg~~L~s~s~ 558 (579)
-...-...... -.++... ++.+++.|+.+ ..+.+||..+.+.... +.........+.+ ++++++.|+.
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~ 262 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGY 262 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCc
Confidence 33321111111 1122222 46777777764 4689999887654332 2211111222323 5677777776
Q ss_pred C-----CeEEEEEcCCC
Q 008050 559 D-----RWIKLWSTRNK 570 (579)
Q Consensus 559 D-----g~I~iW~~~~~ 570 (579)
+ ..|.+||+.+.
T Consensus 263 ~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 263 DGNSLLSSIECYDPIID 279 (301)
T ss_dssp CSSSBEEEEEEEETTTT
T ss_pred CCCcccccEEEEcCCCC
Confidence 5 35778887654
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.90 E-value=0.023 Score=56.07 Aligned_cols=256 Identities=9% Similarity=0.067 Sum_probs=164.7
Q ss_pred CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEEE
Q 008050 308 GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTT 387 (579)
Q Consensus 308 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~ 387 (579)
..|.|.|+.+...+..-.- .--+.-.+|..+.|+.-. ...+.++|++.+....-......|.--.|-... .|+..
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lV 123 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALV 123 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS-EEEEE
T ss_pred CEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC-eEEEE
Confidence 3788889887655433221 122344588888887776 688999999887655444455677777887444 44444
Q ss_pred eCCCeEEEEECCC-CcEEEEEecC----CCCeEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCeEEEEEecCCCC
Q 008050 388 SFDKTWRLWDVDT-GVELLLQEGH----SRSVYGIAFHPDGSLAASCGL-------DALARVWDLRTGRSILALEGHVKP 455 (579)
Q Consensus 388 s~dg~I~lwd~~~-~~~~~~~~~~----~~~V~~l~~spdg~~l~sg~~-------dg~I~iwd~~~~~~~~~~~~~~~~ 455 (579)
+ +..|+.|++.. ......+..| ...|..-..+++.++++..|- .|.+.+|..+.+ .-+.+.+|...
T Consensus 124 T-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~ 201 (365)
T 2xzh_A 124 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS 201 (365)
T ss_dssp E-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEE
T ss_pred c-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeee
Confidence 3 57899999975 3455555544 345777778888887766542 477889997654 34556677554
Q ss_pred eEEEEEcCC---CCEEEEEeC---CCcEEEEECCCC---ce------eEEEeC---CCCCeEEEEEeeCCCeEEEEEECC
Q 008050 456 VLGISFSPN---GYHLATGGE---DNTCRIWDLRKR---KS------LYVIPA---HSNLISQVKFEPQEGYFLVTGSYD 517 (579)
Q Consensus 456 I~si~~sp~---g~~l~tgs~---Dg~I~iwDl~~~---~~------~~~~~~---~~~~V~~v~~sp~~~~~l~sgs~d 517 (579)
...+.+..+ ...|+.+.. .+++.|.++... .. +..+-. ....--++..++. -.+++.-+.-
T Consensus 202 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k-ygviyviTK~ 280 (365)
T 2xzh_A 202 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKY 280 (365)
T ss_dssp EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT-TTEEEEEETT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc-CCEEEEEeCC
Confidence 333333221 123333332 258999988432 11 111111 2344556778875 4466667889
Q ss_pred CEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 518 MTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 518 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
|.|++||+.++.++..-+-....|...+-+....-++.....|.|.--.++..+
T Consensus 281 G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 999999999999998887777777766665555567777788988877776654
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.86 E-value=0.016 Score=58.81 Aligned_cols=235 Identities=11% Similarity=0.079 Sum_probs=131.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEE-------ecccCCeEEEEEecC---CCEEEEEeC--------C
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTF-------QGHLDRLARMAFHPS---GKYLGTTSF--------D 390 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~-------~~h~~~I~~l~~sp~---~~~l~s~s~--------d 390 (579)
.....|+|.|+|++|+++...|.|++++.++.....+ .........++|+|+ +.+|+++.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3568999999998444556779999998655422111 112345689999996 455554432 2
Q ss_pred CeEEEEECCCC-----cEEEEEec------CCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCCe--
Q 008050 391 KTWRLWDVDTG-----VELLLQEG------HSRSVYGIAFHPDGSLAASCGL-------------DALARVWDLRTGR-- 444 (579)
Q Consensus 391 g~I~lwd~~~~-----~~~~~~~~------~~~~V~~l~~spdg~~l~sg~~-------------dg~I~iwd~~~~~-- 444 (579)
..|..|++..+ .....+.. .......|.|.|||.++++.+. .|.|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776533 11111111 1112357999999976666543 2467777765320
Q ss_pred ----------EEEEE-ecCCCCeEEEEEcC-CCCEEEEEeC-CCcEEEEECCCC--------------------------
Q 008050 445 ----------SILAL-EGHVKPVLGISFSP-NGYHLATGGE-DNTCRIWDLRKR-------------------------- 485 (579)
Q Consensus 445 ----------~~~~~-~~~~~~I~si~~sp-~g~~l~tgs~-Dg~I~iwDl~~~-------------------------- 485 (579)
....+ .++ .....++|++ +|.++++-.. ++.=.|.-+..+
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 11112 233 3478899999 5654444322 111122211111
Q ss_pred -----ceeEEEeCCCCCeEEEEEeeC------CCeEEEEEECCCEEEEEECCCCeEEEE--e-cCCCCcEEEEEEcCCCC
Q 008050 486 -----KSLYVIPAHSNLISQVKFEPQ------EGYFLVTGSYDMTVKVWSGRDFKLVKS--L-SGHEAKVTSLDIHPDEQ 551 (579)
Q Consensus 486 -----~~~~~~~~~~~~V~~v~~sp~------~~~~l~sgs~dg~I~iwd~~~~~~~~~--l-~~h~~~V~~l~~s~dg~ 551 (579)
.++..+..| .....+.|... .+.++++....+.|...++..++.+.. + ......+..+++.|||.
T Consensus 257 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 112223222 35667777642 267777777788888888776654432 2 22345799999999998
Q ss_pred EEEEEE-cCCeEEEEEc
Q 008050 552 SIATVS-HDRWIKLWST 567 (579)
Q Consensus 552 ~L~s~s-~Dg~I~iW~~ 567 (579)
+.++.. .+| +||.+
T Consensus 336 lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 336 LYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEECSTTE--EEEEE
T ss_pred EEEEEeCCCC--EEEEE
Confidence 655433 344 44544
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.80 E-value=0.039 Score=55.57 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=131.0
Q ss_pred EeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe-------cccCCeEEEEEecC---CCEEEEE---eCC
Q 008050 324 LKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ-------GHLDRLARMAFHPS---GKYLGTT---SFD 390 (579)
Q Consensus 324 l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------~h~~~I~~l~~sp~---~~~l~s~---s~d 390 (579)
+...-..-..|+|.|+|.++++--..|.|++++.++.....+. ........++|+|+ +.+|++. ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3334456789999999997776655899999985433222221 23456789999995 3445443 245
Q ss_pred CeEEEEECCCC----------cEEEE-Ee-cCCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEeCCCC--
Q 008050 391 KTWRLWDVDTG----------VELLL-QE-GHSRSVYGIAFHPDGSLAASCGL-------------DALARVWDLRTG-- 443 (579)
Q Consensus 391 g~I~lwd~~~~----------~~~~~-~~-~~~~~V~~l~~spdg~~l~sg~~-------------dg~I~iwd~~~~-- 443 (579)
+.|.-|.+..+ +.+.. +. ........|.|.|||.++++.+. .|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 66777766541 12221 11 11123456999999988777542 355555555422
Q ss_pred -------eEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------------eeEEEeCCCCC
Q 008050 444 -------RSILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRK------------------SLYVIPAHSNL 497 (579)
Q Consensus 444 -------~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~------------------~~~~~~~~~~~ 497 (579)
..+. ..+|.. ...++|+++|.++++-. .|+.-.|.-+..+. ++..+..+...
T Consensus 187 ~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 187 PGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp TTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 1122 224443 56899999887655432 22222222222221 23333332234
Q ss_pred eEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE----EEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 498 ISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL----VKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 498 V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
...+.|. .+.+++..-..+.|....+..... ...+.+....+.++.+.|||.++++.+
T Consensus 265 p~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 265 PSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5677776 366666655566676666654432 223444456799999999997665544
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.79 E-value=0.046 Score=56.11 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=150.9
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeeEEEecc
Q 008050 291 GCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG--SLLNTFQGH 368 (579)
Q Consensus 291 ~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~h 368 (579)
+.-.+|..+.||.-. ...+.|||+++...+..+.-.. .|..-.|-.. +.|+..+ +..|+-|++++ .+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 345778888888775 7899999999999998887544 5666677654 3444443 46799999754 566666655
Q ss_pred c----CCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCC---CEEEEEeCC--
Q 008050 369 L----DRLARMAFHPSGKYLGTTSF-------DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDG---SLAASCGLD-- 432 (579)
Q Consensus 369 ~----~~I~~l~~sp~~~~l~s~s~-------dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg---~~l~sg~~d-- 432 (579)
. ..|..-..+++.++++..+- .|.+.+|..+.+.. ..+++|......+.+..+. .+++.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 45667777888887765442 47889999876543 4455776555444443221 244444443
Q ss_pred -CeEEEEeCCCC--------eEEEEE-e---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeE
Q 008050 433 -ALARVWDLRTG--------RSILAL-E---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLIS 499 (579)
Q Consensus 433 -g~I~iwd~~~~--------~~~~~~-~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~ 499 (579)
+.++|.++... +....+ . ....--.++..++.-..++.-+.-|.|.+||+.++.+++.-......|.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 78999998542 111111 1 1233456788888878899999999999999999999998777666666
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
..+.+...+.++. ....|.|.-..++
T Consensus 305 ~t~~~~~~~Gi~~-Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 305 VTAPHEATAGIIG-VNRKGQVLSVCVE 330 (494)
T ss_dssp EEEEETTTTEEEE-EETTCEEEEEEEC
T ss_pred EecccCCCCcEEE-EccCceEEEEEEc
Confidence 5555544333333 3456655554443
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.78 E-value=0.013 Score=59.48 Aligned_cols=224 Identities=15% Similarity=0.138 Sum_probs=125.8
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCe-eEEEEe---CCCCCeEEEEEccC---CCEEEEEeC----C----Cc
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQ-KFSALK---GHTERATDVTFSPV---SNHVATSSA----D----RT 351 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~-~~~~l~---~h~~~V~~l~~sp~---~~~l~s~s~----d----g~ 351 (579)
..-.+++|.++|++++ +..+|.|++++ .++. .+..+. ........|+|+|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3567899999998555 45569999997 3444 222211 12356899999997 555555443 2 56
Q ss_pred EEEEeCCCC------e---eEEEec-ccCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCC-------
Q 008050 352 ARLWNTDGS------L---LNTFQG-HLDRLARMAFHPSGKYLGTTSF-------------DKTWRLWDVDTG------- 401 (579)
Q Consensus 352 I~iwd~~~~------~---~~~~~~-h~~~I~~l~~sp~~~~l~s~s~-------------dg~I~lwd~~~~------- 401 (579)
|..|+.++. . +..+.. .......+.|.|+|.++++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777775543 1 111221 1123467999999986665432 256776766532
Q ss_pred -cEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCC---eEEEEeCCC--------C--------eEEEEEecCCCCeEEEE
Q 008050 402 -VELLLQEGHSRSVYGIAFHP-DGSLAASCGLDA---LARVWDLRT--------G--------RSILALEGHVKPVLGIS 460 (579)
Q Consensus 402 -~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~dg---~I~iwd~~~--------~--------~~~~~~~~~~~~I~si~ 460 (579)
.......++. ....++|++ +|.++++-...+ .|.+...-. + ..+..+.........++
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 1111222443 346899999 666555433221 233322100 0 12233311234578888
Q ss_pred Ec-------CCCCEEEEEeCCCcEEEEECCCC-cee--EEEe-CCCCCeEEEEEeeCCCeEEEEE
Q 008050 461 FS-------PNGYHLATGGEDNTCRIWDLRKR-KSL--YVIP-AHSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 461 ~s-------p~g~~l~tgs~Dg~I~iwDl~~~-~~~--~~~~-~~~~~V~~v~~sp~~~~~l~sg 514 (579)
|. .+|.++++....+.|...++... +.. ..+. .....+..+++.|+ +.++++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD-G~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD-GGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT-SCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC-CcEEEEE
Confidence 84 46777776667778988888753 222 2232 22356888999887 4555444
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.78 E-value=0.0023 Score=63.07 Aligned_cols=221 Identities=14% Similarity=0.182 Sum_probs=113.8
Q ss_pred CEEEEEeCC----CcEEEEeCCCCeeEEEecccC-Ce-EEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEEEEEec
Q 008050 341 NHVATSSAD----RTARLWNTDGSLLNTFQGHLD-RL-ARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGVELLLQEG 409 (579)
Q Consensus 341 ~~l~s~s~d----g~I~iwd~~~~~~~~~~~h~~-~I-~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~ 409 (579)
.+++.|+.+ ..+..||........+..... .. .++... ++..++.|+.+ ..+.+||..+.+-......
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 344445432 357778866554443322111 11 122222 56677777754 3588999988765443221
Q ss_pred CCC-CeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCC-------
Q 008050 410 HSR-SVYGIAFHPDGSLAASCGLDA-----LARVWDLRTGRSILAL--EGHVKPVLGISFSPNGYHLATGGED------- 474 (579)
Q Consensus 410 ~~~-~V~~l~~spdg~~l~sg~~dg-----~I~iwd~~~~~~~~~~--~~~~~~I~si~~sp~g~~l~tgs~D------- 474 (579)
... .-.+++. -++.+++.|+.++ .+.+||+.+.+-...- .........+.+ ++++++.|+.+
T Consensus 96 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 96 RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEEC
T ss_pred CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccc
Confidence 111 1112222 2567777787653 5778998876533221 111111122222 56677776642
Q ss_pred CcEEEEECCCCceeEE--EeCCCCCeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeEEE--EecCCCCcEEEEE
Q 008050 475 NTCRIWDLRKRKSLYV--IPAHSNLISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKLVK--SLSGHEAKVTSLD 545 (579)
Q Consensus 475 g~I~iwDl~~~~~~~~--~~~~~~~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~ 545 (579)
..+.+||+.+.+-... +...... .++... ++.+++.|+.+ ..+.+||..+.+... .+.........+.
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSG-AGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBS-CEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cEEEEEeCCCCcEEECCCCcccccc-ccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 3588999877643322 1111111 122222 46777777764 468999988765432 2221111112222
Q ss_pred EcCCCCEEEEEEcCC-----eEEEEEcCCC
Q 008050 546 IHPDEQSIATVSHDR-----WIKLWSTRNK 570 (579)
Q Consensus 546 ~s~dg~~L~s~s~Dg-----~I~iW~~~~~ 570 (579)
+ ++++++.|+.++ .+.+||+.+.
T Consensus 250 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 250 V--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 567777877654 4888888754
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.76 E-value=0.0031 Score=62.18 Aligned_cols=226 Identities=15% Similarity=0.161 Sum_probs=116.2
Q ss_pred CCEEEEEecC----CeEEEEeCCCCeeEEEEeC-CCCCe-EEEEEccCCCEEEEEeCC-----CcEEEEeCCCCeeEEEe
Q 008050 298 GNLLATSSLS----GVVKIWSMPRLQKFSALKG-HTERA-TDVTFSPVSNHVATSSAD-----RTARLWNTDGSLLNTFQ 366 (579)
Q Consensus 298 g~~latgs~d----g~I~iwd~~~~~~~~~l~~-h~~~V-~~l~~sp~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~ 366 (579)
+.+++.|+.+ ..+.+||..+..-.. +.. ..... .+++. -++.+++.|+.+ ..+.+||.....-..+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455566543 357888887664322 211 11111 12222 256667777654 35888887665544443
Q ss_pred cccC-Ce-EEEEEecCCCEEEEEeCCC-----eEEEEECCCCcEEEEEecCC-CCeEEEEEcCCCCEEEEEeCC------
Q 008050 367 GHLD-RL-ARMAFHPSGKYLGTTSFDK-----TWRLWDVDTGVELLLQEGHS-RSVYGIAFHPDGSLAASCGLD------ 432 (579)
Q Consensus 367 ~h~~-~I-~~l~~sp~~~~l~s~s~dg-----~I~lwd~~~~~~~~~~~~~~-~~V~~l~~spdg~~l~sg~~d------ 432 (579)
.... +. .+++. -++..++.|+.++ .+.+||+.+..-........ ..-.+++.. ++.+++.|+.+
T Consensus 94 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 94 NMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEE
T ss_pred CCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCcc
Confidence 2111 11 12222 2567777777653 58889988776544322111 111122222 56677777643
Q ss_pred -CeEEEEeCCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEeCCCC-CeEEEEE
Q 008050 433 -ALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRKSLYVIPAHSN-LISQVKF 503 (579)
Q Consensus 433 -g~I~iwd~~~~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~~~~~~~~~~~-~V~~v~~ 503 (579)
..+.+||+.+.+-... +.........+.+ ++++++.|+.+ +.+.+||+.+.+-...-..... .-..+..
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 3588999987753322 1111111222222 66777777754 3689999877643322111111 1112222
Q ss_pred eeCCCeEEEEEECCC-----EEEEEECCCCeEE
Q 008050 504 EPQEGYFLVTGSYDM-----TVKVWSGRDFKLV 531 (579)
Q Consensus 504 sp~~~~~l~sgs~dg-----~I~iwd~~~~~~~ 531 (579)
. ++.+++.|+.++ .+.+||..+.+..
T Consensus 250 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 250 V--NGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred E--CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 2 467777777653 4899998776543
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.73 E-value=0.056 Score=55.45 Aligned_cols=257 Identities=9% Similarity=0.056 Sum_probs=167.1
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEE
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGT 386 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s 386 (579)
+..|.|.|+.+...+..-.- .--+.-.+|..+.|+.-. ..++.|+|++.+....-......|.--.|-... .|+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~-~l~l 121 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVAL 121 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-EEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC-eEEE
Confidence 34788888887655432221 123455688888777765 689999999887554444445567777777444 3444
Q ss_pred EeCCCeEEEEECCCC-cEEEEEecC----CCCeEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCeEEEEEecCCC
Q 008050 387 TSFDKTWRLWDVDTG-VELLLQEGH----SRSVYGIAFHPDGSLAASCGL-------DALARVWDLRTGRSILALEGHVK 454 (579)
Q Consensus 387 ~s~dg~I~lwd~~~~-~~~~~~~~~----~~~V~~l~~spdg~~l~sg~~-------dg~I~iwd~~~~~~~~~~~~~~~ 454 (579)
. .+..|+.|++... .....+..| +..|..-..+++.++++..|- .|.+.+|....+ .-..+.+|..
T Consensus 122 V-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 199 (494)
T 1bpo_A 122 V-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 199 (494)
T ss_dssp E-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE
T ss_pred E-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee
Confidence 3 3678999999743 455555544 345777788889888775542 477889998654 3455677765
Q ss_pred CeEEEEEcCCC---CEEEEEeC---CCcEEEEECCCC---c-----eeEEEe----CCCCCeEEEEEeeCCCeEEEEEEC
Q 008050 455 PVLGISFSPNG---YHLATGGE---DNTCRIWDLRKR---K-----SLYVIP----AHSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 455 ~I~si~~sp~g---~~l~tgs~---Dg~I~iwDl~~~---~-----~~~~~~----~~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
....+.+..+. ..++.+.. .+++.|.++... . ....+. .....-..+..++. -.+++.-+.
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK 278 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITK 278 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEET
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEec
Confidence 54444443221 23444433 278999998532 1 111111 12344556888876 446666788
Q ss_pred CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 517 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
-|.|++||+.++.++..-+-....|...+-+....-++.....|.|.--.++..+
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 9999999999999998887777778777666666667777788988877776654
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.72 E-value=0.0039 Score=61.55 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=116.6
Q ss_pred CEEEEEeCC--CcEEEEeCCCCeeEEEecccC-Ce-EEEEEecCCCEEEEEeCC----CeEEEEECCCCcEEEEEecCC-
Q 008050 341 NHVATSSAD--RTARLWNTDGSLLNTFQGHLD-RL-ARMAFHPSGKYLGTTSFD----KTWRLWDVDTGVELLLQEGHS- 411 (579)
Q Consensus 341 ~~l~s~s~d--g~I~iwd~~~~~~~~~~~h~~-~I-~~l~~sp~~~~l~s~s~d----g~I~lwd~~~~~~~~~~~~~~- 411 (579)
.+++.|+.+ ..+.+||.....-..+..... .. .++.. -++..++.|+.+ ..+.+||..++.-........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 345556543 578888866654443322111 11 11222 256677777755 678999998876544332111
Q ss_pred -CCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeC---------
Q 008050 412 -RSVYGIAFHPDGSLAASCGLD------ALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGE--------- 473 (579)
Q Consensus 412 -~~V~~l~~spdg~~l~sg~~d------g~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~--------- 473 (579)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-. .....-..+.+ ++++++.|+.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence 11122222 66777888765 468899998875332211 11111122222 6666676653
Q ss_pred CCcEEEEECCCCceeEEEeCCCC-CeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeEE--EEecCCCCcEEEEE
Q 008050 474 DNTCRIWDLRKRKSLYVIPAHSN-LISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKLV--KSLSGHEAKVTSLD 545 (579)
Q Consensus 474 Dg~I~iwDl~~~~~~~~~~~~~~-~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~~--~~l~~h~~~V~~l~ 545 (579)
-..+.+||+.+.+-...-..... .-..+... ++.+++.|+.+ ..+.+||..+.+.. ..+.........+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 34588999887643322111111 11222333 36777777653 45899998775433 22222112223333
Q ss_pred EcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008050 546 IHPDEQSIATVSHD-----RWIKLWSTRNK 570 (579)
Q Consensus 546 ~s~dg~~L~s~s~D-----g~I~iW~~~~~ 570 (579)
+ ++++++.|+.+ ..+.+||..+.
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3 57778888754 46888888664
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.71 E-value=0.0057 Score=60.36 Aligned_cols=223 Identities=12% Similarity=0.025 Sum_probs=116.1
Q ss_pred CEEEEEec--CCeEEEEeCCCCeeEEE--EeCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCeeEEEecccC
Q 008050 299 NLLATSSL--SGVVKIWSMPRLQKFSA--LKGHTERATDVTFSPVSNHVATSSAD----RTARLWNTDGSLLNTFQGHLD 370 (579)
Q Consensus 299 ~~latgs~--dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~h~~ 370 (579)
.+++.|+. ...+.+||..+.+-... +......-..+. -++.+++.|+.+ ..+.+||........+.....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 45556654 35788888877543221 111111122222 255667777754 568888876655444432111
Q ss_pred -CeEEEEEecCCCEEEEEeCC------CeEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEeC---------CC
Q 008050 371 -RLARMAFHPSGKYLGTTSFD------KTWRLWDVDTGVELLLQEGHSR-SVYGIAFHPDGSLAASCGL---------DA 433 (579)
Q Consensus 371 -~I~~l~~sp~~~~l~s~s~d------g~I~lwd~~~~~~~~~~~~~~~-~V~~l~~spdg~~l~sg~~---------dg 433 (579)
........-++..++.|+.+ ..+.+||..+..-...-..... .-.++.. -++.+++.|+. -.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccc
Confidence 11111112266777777765 4689999988765443221111 1112222 25667777764 34
Q ss_pred eEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeCCCCCeEEEEEe
Q 008050 434 LARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRKSLYV--IPAHSNLISQVKFE 504 (579)
Q Consensus 434 ~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~~~~~--~~~~~~~V~~v~~s 504 (579)
.+.+||+.+.+-...-. .....-..+.+ ++++++.|+.+ ..+.+||+.+.+-... +........ +...
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~ 246 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK-CAAV 246 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE-EEEE
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee-EEEE
Confidence 58899998875332211 11111122222 66677777643 4688999877543221 111111122 2222
Q ss_pred eCCCeEEEEEECC-----CEEEEEECCCCe
Q 008050 505 PQEGYFLVTGSYD-----MTVKVWSGRDFK 529 (579)
Q Consensus 505 p~~~~~l~sgs~d-----g~I~iwd~~~~~ 529 (579)
++.+++.|+.+ ..+.+||..+.+
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 46788888754 578999987644
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.70 E-value=0.036 Score=58.24 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEe---c------ccCCeEEEEEecC---CCEEEEEeC------
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQ---G------HLDRLARMAFHPS---GKYLGTTSF------ 389 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~---~------h~~~I~~l~~sp~---~~~l~s~s~------ 389 (579)
-.....|+|.|+|+++++-...+.|++++..+.....+. . .......|+|+|+ +.+|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999997776544457888875422222221 1 2345679999995 555555442
Q ss_pred -------CCeEEEEECCCC-------cEEEE-Ee-cCCCCeEEEEEcCCCCEEEEEeC
Q 008050 390 -------DKTWRLWDVDTG-------VELLL-QE-GHSRSVYGIAFHPDGSLAASCGL 431 (579)
Q Consensus 390 -------dg~I~lwd~~~~-------~~~~~-~~-~~~~~V~~l~~spdg~~l~sg~~ 431 (579)
...|..|+...+ +.+.. +. ........|.|.+||.++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 11111 11 11234788999999998777553
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.67 E-value=0.031 Score=56.27 Aligned_cols=224 Identities=15% Similarity=0.115 Sum_probs=125.4
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEE--EE----eCCCCCeEEEEEccC---CCEEEEE-e--CCCcEEE
Q 008050 287 RPLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFS--AL----KGHTERATDVTFSPV---SNHVATS-S--ADRTARL 354 (579)
Q Consensus 287 ~~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~--~l----~~h~~~V~~l~~sp~---~~~l~s~-s--~dg~I~i 354 (579)
..-..++|.|||.++++-...|.|++++..++.... .+ .........|+|+|+ +.+|++. + .++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 456789999999987776668999999866554322 11 123456899999995 4444443 2 3455666
Q ss_pred EeCCC---------CeeE---EEe-cccCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCC-------
Q 008050 355 WNTDG---------SLLN---TFQ-GHLDRLARMAFHPSGKYLGTTSF-------------DKTWRLWDVDTG------- 401 (579)
Q Consensus 355 wd~~~---------~~~~---~~~-~h~~~I~~l~~sp~~~~l~s~s~-------------dg~I~lwd~~~~------- 401 (579)
|..++ .... .+. .....-..|.|.|+|.++++.+. .|.|.-++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 65443 1111 121 11223467999999986666442 356666665432
Q ss_pred -cEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCe------------------EEEEEecCCCCeEEEEE
Q 008050 402 -VELLLQEGHSRSVYGIAFHPDGSLAASCG-LDALARVWDLRTGR------------------SILALEGHVKPVLGISF 461 (579)
Q Consensus 402 -~~~~~~~~~~~~V~~l~~spdg~~l~sg~-~dg~I~iwd~~~~~------------------~~~~~~~~~~~I~si~~ 461 (579)
.......+|. ....++|+++|.++++-. .++.=.|.-+..+. .+..+..+......++|
T Consensus 192 ~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 192 PGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp TTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 1112223554 355899999887655432 23222222222221 12333323235667777
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCce----eEEEeCCCCCeEEEEEeeCCCeEEEE
Q 008050 462 SPNGYHLATGGEDNTCRIWDLRKRKS----LYVIPAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 462 sp~g~~l~tgs~Dg~I~iwDl~~~~~----~~~~~~~~~~V~~v~~sp~~~~~l~s 513 (579)
. +|..++..-..+.|....+..... ...+......+..|...|+ +.++++
T Consensus 271 ~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD-G~lyv~ 324 (347)
T 3das_A 271 A-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG-DKLWLV 324 (347)
T ss_dssp E-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET-TEEEEE
T ss_pred E-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC-CcEEEE
Confidence 6 455666555666777777655432 2223333467888999997 444444
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.61 E-value=0.006 Score=60.54 Aligned_cols=219 Identities=12% Similarity=0.061 Sum_probs=111.5
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEec--ccCCeEEEEEecCCCEEEEEeC-----C------CeEEEEECCCCcEEEEEec
Q 008050 343 VATSSADRTARLWNTDGSLLNTFQG--HLDRLARMAFHPSGKYLGTTSF-----D------KTWRLWDVDTGVELLLQEG 409 (579)
Q Consensus 343 l~s~s~dg~I~iwd~~~~~~~~~~~--h~~~I~~l~~sp~~~~l~s~s~-----d------g~I~lwd~~~~~~~~~~~~ 409 (579)
++.|+ ..+.+||.....-..... ...+........++..++.|+. . ..+..||..+++-......
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44454 578889976654332221 1123333344457777777773 1 2378899888764332111
Q ss_pred CCC-CeEEEEEcCCCCEEEEEeCC--------CeEEEEeCCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeC-C---
Q 008050 410 HSR-SVYGIAFHPDGSLAASCGLD--------ALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYHLATGGE-D--- 474 (579)
Q Consensus 410 ~~~-~V~~l~~spdg~~l~sg~~d--------g~I~iwd~~~~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~-D--- 474 (579)
... .-.+++.. ++.+++.|+.+ ..+.+||..+++-... +......-..+. -++++++.|+. +
T Consensus 86 p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSC
T ss_pred CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCc
Confidence 110 01112222 56677777742 4588999987653221 111111112222 35667777775 2
Q ss_pred --CcEEEEECCCCceeEEEeCCCCC-eEEEEEeeCCCeEEEEEECCC-----EEEEEECCCCeEEE--EecCCCCcEEEE
Q 008050 475 --NTCRIWDLRKRKSLYVIPAHSNL-ISQVKFEPQEGYFLVTGSYDM-----TVKVWSGRDFKLVK--SLSGHEAKVTSL 544 (579)
Q Consensus 475 --g~I~iwDl~~~~~~~~~~~~~~~-V~~v~~sp~~~~~l~sgs~dg-----~I~iwd~~~~~~~~--~l~~h~~~V~~l 544 (579)
+.+.+||+.+.+-...-...... -.++... ++.+++.|+.++ .+.+||..+.+... .+.........+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 46899998775432211111111 1122222 467777777654 58899987765433 222111112223
Q ss_pred EEcCCCCEEEEEEcCC--------------eEEEEEcCCC
Q 008050 545 DIHPDEQSIATVSHDR--------------WIKLWSTRNK 570 (579)
Q Consensus 545 ~~s~dg~~L~s~s~Dg--------------~I~iW~~~~~ 570 (579)
.+ ++++++.|+.++ .+.+||+.+.
T Consensus 241 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 241 SL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 23 567777777642 3667777654
No 324
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.58 E-value=0.16 Score=56.79 Aligned_cols=272 Identities=9% Similarity=0.020 Sum_probs=156.9
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEec
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 367 (579)
.|.++....++..|..|+. +-+..|+..+++...........|.++....+|.+.+ |+.+ -+.+++........+..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEc
Confidence 4788888887777677774 4588888776654322111234588888777776554 4544 47788866554444431
Q ss_pred --------ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008050 368 --------HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE-----GHSRSVYGIAFHPDGSLAASCGLDAL 434 (579)
Q Consensus 368 --------h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~-----~~~~~V~~l~~spdg~~l~sg~~dg~ 434 (579)
....|.++....+|. |.+|+..| +.++............ .....|.++....+|.+.+ |+.+|
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G- 344 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG- 344 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-
Confidence 124588888777775 55666666 5554332211111110 1234688888888886555 44444
Q ss_pred EEEEeCCCCe--EEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-C-----CCCCeE
Q 008050 435 ARVWDLRTGR--SILALEG-------HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP-A-----HSNLIS 499 (579)
Q Consensus 435 I~iwd~~~~~--~~~~~~~-------~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~-~-----~~~~V~ 499 (579)
+..++..++. ....+.. ....|.++.-..+|.+ ..|+ ++-|.+||..+++...... . ....|.
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 422 (758)
T 3ott_A 345 LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY 422 (758)
T ss_dssp EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE
T ss_pred ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE
Confidence 6667665432 1222221 1235889988888764 4455 4569999987765433211 1 124577
Q ss_pred EEEEeeCCCeEEEEEECCCEEEEEECCC------CeEE--EEec---C-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 500 QVKFEPQEGYFLVTGSYDMTVKVWSGRD------FKLV--KSLS---G-HEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 500 ~v~~sp~~~~~l~sgs~dg~I~iwd~~~------~~~~--~~l~---~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
++....+ + .|..|+..+-|.+||..+ .... ..+. + ....|.++....+|.+.+.++..+-|..|+.
T Consensus 423 ~i~~d~~-g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~ 500 (758)
T 3ott_A 423 YIFEDTA-G-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINP 500 (758)
T ss_dssp EEEECTT-S-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEET
T ss_pred EEEEcCC-C-CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeC
Confidence 7766653 4 455577666688888542 1111 1211 1 2235899999888886653333444888887
Q ss_pred CCC
Q 008050 568 RNK 570 (579)
Q Consensus 568 ~~~ 570 (579)
.++
T Consensus 501 ~~~ 503 (758)
T 3ott_A 501 RTR 503 (758)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.55 E-value=0.077 Score=52.40 Aligned_cols=248 Identities=9% Similarity=0.011 Sum_probs=138.8
Q ss_pred EcCCCCEEEEEe--cCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCC--------------CcEEEEeC
Q 008050 294 YSHDGNLLATSS--LSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSAD--------------RTARLWNT 357 (579)
Q Consensus 294 ~spdg~~latgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~d--------------g~I~iwd~ 357 (579)
|+.+|.+|.... .++.|+..+..... ...+... .+--+++++++|+.+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 345677777664 25666666654333 3333221 234557888888777543 35777777
Q ss_pred CCCeeEEEecccCCeEEEEEecCCCEEEEEe----CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeC-C
Q 008050 358 DGSLLNTFQGHLDRLARMAFHPSGKYLGTTS----FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGL-D 432 (579)
Q Consensus 358 ~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s----~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~-d 432 (579)
++.....+.... +..|++++++|+-.. .+..|+..++......... .+.. ..|+++++.|+..+. .
T Consensus 96 dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt-~~~~----~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 96 NGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK-NHYL----FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp TSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE-SSCC----CCSEEETTEEEEECTTT
T ss_pred CCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe-CCCc----eEeeEECCEEEEEeCCC
Confidence 776555554332 336777888888775 3456777777654433333 2322 345677877776655 6
Q ss_pred CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 433 ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGED--NTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 433 g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~D--g~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
..|.+.++..+.....+.+ ... ..+.|++.+|+-...+ ..|..-++.... ...+.. ..+ ..|++.+..+
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~I 237 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLI 237 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEE
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEE
Confidence 7888888877654443332 222 3466888888776643 367777775443 333322 233 3377765555
Q ss_pred EEEE-ECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEE-cCCeEEEEEcCC
Q 008050 511 LVTG-SYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVS-HDRWIKLWSTRN 569 (579)
Q Consensus 511 l~sg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~iW~~~~ 569 (579)
+.+. ...+.|..-++..........+ .+..+ +..+.+|+-.. ..+.|..-++..
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEESSS
T ss_pred EEEECCCCcEEEEEECCCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEECCC
Confidence 4442 2346777777754332222222 24444 44567776665 335555445433
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.19 Score=58.92 Aligned_cols=269 Identities=10% Similarity=0.053 Sum_probs=152.5
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCC--------eeEEEEeCCCCCeEEEEEccC----CCEEEEEeC---CCcEEE
Q 008050 290 SGCSYSHDGNLLATSSLSGVVKIWSMPRL--------QKFSALKGHTERATDVTFSPV----SNHVATSSA---DRTARL 354 (579)
Q Consensus 290 ~~~~~spdg~~latgs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~l~~sp~----~~~l~s~s~---dg~I~i 354 (579)
+|+++-. +.+|+.|+..|.=.+|.+... ..+..+. .-++|.+++.... ...|++++. +|.+++
T Consensus 330 ssl~~l~-~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 330 ECLTYLD-NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp SEEEECS-TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred cEEEEEC-CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 4455544 448899998888788877643 2334443 5578888887542 235665544 578888
Q ss_pred Ee--CCCCeeEEEec-ccCCeEEEEEe---cCCCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCCeEEEEEc--CCCC
Q 008050 355 WN--TDGSLLNTFQG-HLDRLARMAFH---PSGKYLGTTSFDKTWRLWDVDTGVELLLQE--GHSRSVYGIAFH--PDGS 424 (579)
Q Consensus 355 wd--~~~~~~~~~~~-h~~~I~~l~~s---p~~~~l~s~s~dg~I~lwd~~~~~~~~~~~--~~~~~V~~l~~s--pdg~ 424 (579)
+. +.-.....+.- ....++.+... ....||+.+..+.+ .++.+... .+.... +.......+... .++
T Consensus 408 lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~- 484 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQ- 484 (1158)
T ss_dssp EEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEETTT-
T ss_pred EecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcCCC-
Confidence 87 32222222211 22344555432 23457777776666 45554322 222211 111111111111 122
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEeCCCCCeEEE
Q 008050 425 LAASCGLDALARVWDLRTGRSILALEGHV-KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL--YVIPAHSNLISQV 501 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~--~~~~~~~~~V~~v 501 (579)
.++=.+ ...|++++...+..+..+.... ..|...+.+ +.+++.++ ++.+.++.+..+... .... -...|.|+
T Consensus 485 ~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl 559 (1158)
T 3ei3_A 485 QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACL 559 (1158)
T ss_dssp EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEE
T ss_pred eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEE
Confidence 222222 3456777776666666666433 357776664 34666665 678888887655322 2222 24579999
Q ss_pred EEeeCC-----CeEEEEEEC-CCEEEEEECCCCeEEEEecC-CCCcEEEEEEcC--CCCEEEEEEcCCeEEEEEcC
Q 008050 502 KFEPQE-----GYFLVTGSY-DMTVKVWSGRDFKLVKSLSG-HEAKVTSLDIHP--DEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 502 ~~sp~~-----~~~l~sgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~--dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+.+.. ..+++.|.. |++|+|+++.+.+.+....- ......++.+.. ...+|..|-.||.+.-+.+.
T Consensus 560 ~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 560 DITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp ECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred EeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 987632 468899997 99999999998776654332 122345554432 34578888899988776664
No 327
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.52 E-value=0.0091 Score=60.45 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=111.7
Q ss_pred CCCcEEEEeCCC--CeeEE--Eec-----ccCCeEEEEEec--CCC-EEEEEeC---CCeEEEEECCCC--cEEE--EEe
Q 008050 348 ADRTARLWNTDG--SLLNT--FQG-----HLDRLARMAFHP--SGK-YLGTTSF---DKTWRLWDVDTG--VELL--LQE 408 (579)
Q Consensus 348 ~dg~I~iwd~~~--~~~~~--~~~-----h~~~I~~l~~sp--~~~-~l~s~s~---dg~I~lwd~~~~--~~~~--~~~ 408 (579)
.+|.|.++|.+. ..... +.+ .......+.+.+ ++. +|+++.. +.+|.+|++..+ .... .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999653 12222 222 223567777766 354 4554432 467778776543 2222 222
Q ss_pred c-CCCCeEEEEEcCCCCEEEEEeC-----------------CCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 409 G-HSRSVYGIAFHPDGSLAASCGL-----------------DALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 409 ~-~~~~V~~l~~spdg~~l~sg~~-----------------dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
+ .-...+.+.+.++|.++++... .|.|..||. ++.. .+...-..-+.|+|+|++++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCCCCEEEE
Confidence 2 1246889999999988777541 245555554 3322 22223345789999999988777
Q ss_pred Ee-CCCcEEEEECCC-Cce--eEEEeCCCCCeEEEEEeeCCCeEEEEEECC-CEEEEEECC--CCeEEEEecC---CCCc
Q 008050 471 GG-EDNTCRIWDLRK-RKS--LYVIPAHSNLISQVKFEPQEGYFLVTGSYD-MTVKVWSGR--DFKLVKSLSG---HEAK 540 (579)
Q Consensus 471 gs-~Dg~I~iwDl~~-~~~--~~~~~~~~~~V~~v~~sp~~~~~l~sgs~d-g~I~iwd~~--~~~~~~~l~~---h~~~ 540 (579)
+. ..+.|..|++.. +.. ...+.. .+....++++.++|++.+++..+ +.|..|+.. .+..+..+.. ....
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~~~-~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~ 316 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVLSF-DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPK 316 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEEC-SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCE
T ss_pred EeCCCCeEEEEEECCCCcEecCEEEeC-CCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcE
Confidence 65 567899999863 322 223322 45677888887325555555433 344444433 2444444432 2233
Q ss_pred EEEEEEcCCCCE
Q 008050 541 VTSLDIHPDEQS 552 (579)
Q Consensus 541 V~~l~~s~dg~~ 552 (579)
|..+ |..+|+.
T Consensus 317 v~~v-~~ddG~~ 327 (355)
T 3sre_A 317 VTVV-YAENGTV 327 (355)
T ss_dssp EEEE-EEECSSS
T ss_pred EEEE-EEcCCCE
Confidence 4444 4446654
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.49 E-value=0.018 Score=56.93 Aligned_cols=224 Identities=6% Similarity=-0.086 Sum_probs=115.3
Q ss_pred EEEEEecCCeEEEEeCCCCeeEE-EEeCCCCCeEEEEEccCCCEEEEEeC-----C------CcEEEEeCCCCeeEEEec
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFS-ALKGHTERATDVTFSPVSNHVATSSA-----D------RTARLWNTDGSLLNTFQG 367 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~s~s~-----d------g~I~iwd~~~~~~~~~~~ 367 (579)
+++.|+ ..+.+||..+.+-.. .+........+.....++.+++.|+. . ..+.+||.....-..+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 678999988776432 11112233333344457788888873 1 126777766554433322
Q ss_pred ccCCe--EEEEEecCCCEEEEEeCC--------CeEEEEECCCCcEEEEEecCCCC-eEEEEEcCCCCEEEEEeC-C---
Q 008050 368 HLDRL--ARMAFHPSGKYLGTTSFD--------KTWRLWDVDTGVELLLQEGHSRS-VYGIAFHPDGSLAASCGL-D--- 432 (579)
Q Consensus 368 h~~~I--~~l~~sp~~~~l~s~s~d--------g~I~lwd~~~~~~~~~~~~~~~~-V~~l~~spdg~~l~sg~~-d--- 432 (579)
....- .+++.. ++..++.|+.+ ..+.+||..+.+-.......... -.+++. -++.+++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSC
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCc
Confidence 11111 122222 56666666632 46899999887543322111111 112222 35667777776 2
Q ss_pred --CeEEEEeCCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEeCCCCC-eEEEE
Q 008050 433 --ALARVWDLRTGRSILAL--EGHVKPVLGISFSPNGYHLATGGEDN-----TCRIWDLRKRKSLYVIPAHSNL-ISQVK 502 (579)
Q Consensus 433 --g~I~iwd~~~~~~~~~~--~~~~~~I~si~~sp~g~~l~tgs~Dg-----~I~iwDl~~~~~~~~~~~~~~~-V~~v~ 502 (579)
..+.+||+.+.+-...- ......-.++.+ ++++++.|+.++ .+.+||+.+.+-...-...... -.++.
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 46889998876432211 111111122222 667778887554 5888998776433221111111 11222
Q ss_pred EeeCCCeEEEEEECC--------------CEEEEEECCCCeEE
Q 008050 503 FEPQEGYFLVTGSYD--------------MTVKVWSGRDFKLV 531 (579)
Q Consensus 503 ~sp~~~~~l~sgs~d--------------g~I~iwd~~~~~~~ 531 (579)
.. ++.+++.|+.+ ..+.+||..+.+..
T Consensus 241 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 241 SL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 22 46777777753 24778888765543
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.37 E-value=0.041 Score=55.69 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=123.6
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEE-------eCCCCCeEEEEEccC---CCEEEEEe-C-------C
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSAL-------KGHTERATDVTFSPV---SNHVATSS-A-------D 349 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~l~~sp~---~~~l~s~s-~-------d 349 (579)
.-..++|.|+|++|+++...|.|++++.. +.....+ .........|+|+|+ +..|+++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999944455668999999853 3321111 112346789999996 45554443 2 2
Q ss_pred CcEEEEeCCCC-----eeEE-Eec------ccCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCC---
Q 008050 350 RTARLWNTDGS-----LLNT-FQG------HLDRLARMAFHPSGKYLGTTSF-------------DKTWRLWDVDTG--- 401 (579)
Q Consensus 350 g~I~iwd~~~~-----~~~~-~~~------h~~~I~~l~~sp~~~~l~s~s~-------------dg~I~lwd~~~~--- 401 (579)
..|..|+.+.. .... +.. .......+.|.|+|.++++.+. .|.|.-++....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666664321 1111 111 1112367999999965555432 256777776542
Q ss_pred -----------cEEEEEecCCCCeEEEEEcC-CCCEEEEEeC-CCeEEEEeCCCCe------------------------
Q 008050 402 -----------VELLLQEGHSRSVYGIAFHP-DGSLAASCGL-DALARVWDLRTGR------------------------ 444 (579)
Q Consensus 402 -----------~~~~~~~~~~~~V~~l~~sp-dg~~l~sg~~-dg~I~iwd~~~~~------------------------ 444 (579)
..+. ..++ .....++|++ +|.++++-.. ++.=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~-a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIW-SYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEE-EECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEE-EEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1121 1233 3467899999 5654443221 1111222111111
Q ss_pred -------EEEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceeEE--E-eCCCCCeEEEEEeeCC
Q 008050 445 -------SILALEGHVKPVLGISFSP-------NGYHLATGGEDNTCRIWDLRKRKSLYV--I-PAHSNLISQVKFEPQE 507 (579)
Q Consensus 445 -------~~~~~~~~~~~I~si~~sp-------~g~~l~tgs~Dg~I~iwDl~~~~~~~~--~-~~~~~~V~~v~~sp~~ 507 (579)
.+..+.. ......+.|.. +|.++++....+.|...++..++.+.. + ......+..+++.|+
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd- 333 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD- 333 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT-
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC-
Confidence 1222322 23567788864 467777766778888888876544332 2 122346888999997
Q ss_pred CeEEEEE-ECCCEEE
Q 008050 508 GYFLVTG-SYDMTVK 521 (579)
Q Consensus 508 ~~~l~sg-s~dg~I~ 521 (579)
+.++++. ..+|.|.
T Consensus 334 G~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 334 GYLYVLTDESSGELL 348 (353)
T ss_dssp SCEEEEECSTTEEEE
T ss_pred CcEEEEEeCCCCEEE
Confidence 4444432 2345443
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.37 E-value=0.0072 Score=59.76 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=114.2
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCeeEEEecccC-Ce-EEEEEecCCCEEEEEeC----C-----CeEEEEECCCCcE
Q 008050 339 VSNHVATSSAD----RTARLWNTDGSLLNTFQGHLD-RL-ARMAFHPSGKYLGTTSF----D-----KTWRLWDVDTGVE 403 (579)
Q Consensus 339 ~~~~l~s~s~d----g~I~iwd~~~~~~~~~~~h~~-~I-~~l~~sp~~~~l~s~s~----d-----g~I~lwd~~~~~~ 403 (579)
++.+++.|+.+ ..+.+||.....-..+..... .. .+++.. ++..++.|+. + ..+.+||+.+.+-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 34555555532 357778866554443322111 11 122222 5666667665 2 4688999987754
Q ss_pred EEEEecC--CCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 404 LLLQEGH--SRSVYGIAFHPDGSLAASCGLD-----ALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYHLATGGED 474 (579)
Q Consensus 404 ~~~~~~~--~~~V~~l~~spdg~~l~sg~~d-----g~I~iwd~~~~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~D 474 (579)
....... ......+.+ ++.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 4332111 111222222 56777777643 3688899887653322 1111111222223 66777777654
Q ss_pred -----CcEEEEECCCCceeEE--EeCCCCCeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeEEE--EecCCCCc
Q 008050 475 -----NTCRIWDLRKRKSLYV--IPAHSNLISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKLVK--SLSGHEAK 540 (579)
Q Consensus 475 -----g~I~iwDl~~~~~~~~--~~~~~~~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~~~--~l~~h~~~ 540 (579)
+.+.+||+.+.+-... +...... .++... ++.+++.|+.+ ..+.+||+.+.+... .+......
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSG-AGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCcccc-ceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4588999876543221 1111111 222232 46777777764 569999988765432 22211111
Q ss_pred EEEEEEcCCCCEEEEEEcC-----CeEEEEEcCCC
Q 008050 541 VTSLDIHPDEQSIATVSHD-----RWIKLWSTRNK 570 (579)
Q Consensus 541 V~~l~~s~dg~~L~s~s~D-----g~I~iW~~~~~ 570 (579)
...+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 222222 56777777754 45778887654
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.34 E-value=0.017 Score=57.04 Aligned_cols=224 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred cCCCCEEEEEecC----CeEEEEeCCCCeeEEE--EeCCCCCeEEEEEccCCCEEEEEeC----C-----CcEEEEeCCC
Q 008050 295 SHDGNLLATSSLS----GVVKIWSMPRLQKFSA--LKGHTERATDVTFSPVSNHVATSSA----D-----RTARLWNTDG 359 (579)
Q Consensus 295 spdg~~latgs~d----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~s~s~----d-----g~I~iwd~~~ 359 (579)
.-++.+++.|+.+ ..+.+||..+.+-... +......- +++.. ++.+++.|+. + ..+.+||...
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3456777777742 4688899876553221 11111111 22222 5566666665 2 4678888766
Q ss_pred CeeEEEeccc---CCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCcEEEEEecC--CCCeEEEEEcCCCCEEEEE
Q 008050 360 SLLNTFQGHL---DRLARMAFHPSGKYLGTTSFD-----KTWRLWDVDTGVELLLQEGH--SRSVYGIAFHPDGSLAASC 429 (579)
Q Consensus 360 ~~~~~~~~h~---~~I~~l~~sp~~~~l~s~s~d-----g~I~lwd~~~~~~~~~~~~~--~~~V~~l~~spdg~~l~sg 429 (579)
.....+.... .....+.+ ++..++.|+.+ ..+.+||+.+.+-....... ......+.+ ++.+++.|
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 175 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVG 175 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEe
Confidence 5444332211 11122222 56677776643 46889999877544332111 111122222 56777777
Q ss_pred eCC-----CeEEEEeCCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeCCC
Q 008050 430 GLD-----ALARVWDLRTGRSILA--LEGHVKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRKSLYV--IPAHS 495 (579)
Q Consensus 430 ~~d-----g~I~iwd~~~~~~~~~--~~~~~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~~~~~--~~~~~ 495 (579)
+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +....
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 764 4588999887653321 1111111222233 66777777754 4689999877643321 11111
Q ss_pred CCeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCe
Q 008050 496 NLISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFK 529 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~ 529 (579)
.. .++... ++.+++.|+.+ ..+.+||..+.+
T Consensus 254 ~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SA-LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cc-eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11 222232 46777777753 467888887654
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.31 E-value=0.016 Score=57.42 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=105.4
Q ss_pred cEEEEeCCCCeeEEEec--ccCCeEEEEEecCCCEEEEEeC----CC-------eEEEEECCCCcEEEEEecC-CCCeEE
Q 008050 351 TARLWNTDGSLLNTFQG--HLDRLARMAFHPSGKYLGTTSF----DK-------TWRLWDVDTGVELLLQEGH-SRSVYG 416 (579)
Q Consensus 351 ~I~iwd~~~~~~~~~~~--h~~~I~~l~~sp~~~~l~s~s~----dg-------~I~lwd~~~~~~~~~~~~~-~~~V~~ 416 (579)
.+..||.....-..... ...+........++..++.|+. ++ .+..||..+.+-....... ...-.+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 37788865544332211 1122223333456777777773 11 2778898877554332111 111112
Q ss_pred EEEcCCCCEEEEEeCC-------CeEEEEeCCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 008050 417 IAFHPDGSLAASCGLD-------ALARVWDLRTGRSILALEGHVKP-VLGISFSPNGYHLATGGE------DNTCRIWDL 482 (579)
Q Consensus 417 l~~spdg~~l~sg~~d-------g~I~iwd~~~~~~~~~~~~~~~~-I~si~~sp~g~~l~tgs~------Dg~I~iwDl 482 (579)
++.. ++.+++.|+.+ ..+.+||+.+.+-...-...... -.+++. .++++++.|+. -+.+.+||+
T Consensus 105 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 105 LGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEET
T ss_pred eEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcC
Confidence 2222 56677777754 35788898876533221111000 011222 36667777763 235899998
Q ss_pred CCCceeEEEeCCCC-CeEEEEEeeCCCeEEEEEECC-----CEEEEEECCCCeE--EEEecCCCCcEEEEEEcCCCCEEE
Q 008050 483 RKRKSLYVIPAHSN-LISQVKFEPQEGYFLVTGSYD-----MTVKVWSGRDFKL--VKSLSGHEAKVTSLDIHPDEQSIA 554 (579)
Q Consensus 483 ~~~~~~~~~~~~~~-~V~~v~~sp~~~~~l~sgs~d-----g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~ 554 (579)
.+.+-...-..... .-.+++.. ++.+++.|+.+ ..+.+||..+.+. +..+.........+.+ ++++++
T Consensus 183 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 258 (318)
T 2woz_A 183 KKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYA 258 (318)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEE
Confidence 87653322111111 11223332 36777777643 3578899876543 3323222111222222 466777
Q ss_pred EEEcC--------------CeEEEEEcCCC
Q 008050 555 TVSHD--------------RWIKLWSTRNK 570 (579)
Q Consensus 555 s~s~D--------------g~I~iW~~~~~ 570 (579)
.||.+ ..+.+||+.+.
T Consensus 259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp ECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred ECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 77754 34777887653
No 333
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.31 E-value=0.03 Score=56.64 Aligned_cols=185 Identities=12% Similarity=0.163 Sum_probs=110.5
Q ss_pred CeEEEEEecCCCEEEEE------------eCCCeEEEEECCC--CcEEE-EEec-----CCCCeEEEEEcC--CCC--EE
Q 008050 371 RLARMAFHPSGKYLGTT------------SFDKTWRLWDVDT--GVELL-LQEG-----HSRSVYGIAFHP--DGS--LA 426 (579)
Q Consensus 371 ~I~~l~~sp~~~~l~s~------------s~dg~I~lwd~~~--~~~~~-~~~~-----~~~~V~~l~~sp--dg~--~l 426 (579)
..-.+.+.++|..++++ ..+|.|.++|..+ .+... ...+ .......|.+.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677776544443 2689999999974 22211 2222 123567788766 454 34
Q ss_pred EEEeC--CCeEEEEeCCCC--e--EEEEEecC-CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEC
Q 008050 427 ASCGL--DALARVWDLRTG--R--SILALEGH-VKPVLGISFSPNGYHLATGGE-----------------DNTCRIWDL 482 (579)
Q Consensus 427 ~sg~~--dg~I~iwd~~~~--~--~~~~~~~~-~~~I~si~~sp~g~~l~tgs~-----------------Dg~I~iwDl 482 (579)
++-.. +..|.+|++... . .+..+.+. ....+.+.+.++|.+.++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 467778776543 2 22233322 235789999999987776541 245666664
Q ss_pred CCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC-CeE--EEEecCCCCcEEEEEEcC-CCCEEEEEEc
Q 008050 483 RKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD-FKL--VKSLSGHEAKVTSLDIHP-DEQSIATVSH 558 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~s~-dg~~L~s~s~ 558 (579)
++ +..+...-..-+.++|+|++..++++-+..+.|..|++.. ++. ...+ ...+..-.+++.. +|++.+++..
T Consensus 211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 32 2222222345788999998666667767789999999853 332 2233 2245678899999 5987776664
Q ss_pred C
Q 008050 559 D 559 (579)
Q Consensus 559 D 559 (579)
+
T Consensus 287 ~ 287 (355)
T 3sre_A 287 N 287 (355)
T ss_dssp C
T ss_pred C
Confidence 4
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.18 E-value=0.058 Score=53.30 Aligned_cols=224 Identities=9% Similarity=0.017 Sum_probs=113.6
Q ss_pred EEEEEecCCeEEEEeCCCCeeEE-EEeCCCCCeEEEEEccCCCEEEEEeC----CC-------cEEEEeCCCCeeEEEec
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFS-ALKGHTERATDVTFSPVSNHVATSSA----DR-------TARLWNTDGSLLNTFQG 367 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~s~s~----dg-------~I~iwd~~~~~~~~~~~ 367 (579)
+++.|+. .+..||..+.+-.. .+........+.....++.+++.|+. ++ .+.+||.....-..+..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4455543 47889988766433 12211222233334456778888873 12 16677766554443322
Q ss_pred ccCC--eEEEEEecCCCEEEEEeCC-------CeEEEEECCCCcEEEEEecCCC-CeEEEEEcCCCCEEEEEeC------
Q 008050 368 HLDR--LARMAFHPSGKYLGTTSFD-------KTWRLWDVDTGVELLLQEGHSR-SVYGIAFHPDGSLAASCGL------ 431 (579)
Q Consensus 368 h~~~--I~~l~~sp~~~~l~s~s~d-------g~I~lwd~~~~~~~~~~~~~~~-~V~~l~~spdg~~l~sg~~------ 431 (579)
.... -.+++.. ++..++.|+.+ ..+.+||..+.+-......... .-.+++. .++.+++.|+.
T Consensus 96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCB
T ss_pred CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCc
Confidence 1111 1122222 56677777754 3588899987755443211111 0111222 36667777764
Q ss_pred CCeEEEEeCCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeCCCCCeEEEE
Q 008050 432 DALARVWDLRTGRSILALE--GHVKPVLGISFSPNGYHLATGGED-----NTCRIWDLRKRKSLYV--IPAHSNLISQVK 502 (579)
Q Consensus 432 dg~I~iwd~~~~~~~~~~~--~~~~~I~si~~sp~g~~l~tgs~D-----g~I~iwDl~~~~~~~~--~~~~~~~V~~v~ 502 (579)
-..+.+||+.+.+-...-. ........+.+ ++++++.|+.+ ..+.+||+.+.+-... +...... .++.
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~ 250 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLV 250 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEE
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEE
Confidence 2358999998875332211 11111122222 56777777643 3577899876543221 1111111 1222
Q ss_pred EeeCCCeEEEEEECC--------------CEEEEEECCCCeEEE
Q 008050 503 FEPQEGYFLVTGSYD--------------MTVKVWSGRDFKLVK 532 (579)
Q Consensus 503 ~sp~~~~~l~sgs~d--------------g~I~iwd~~~~~~~~ 532 (579)
.. ++.+++.|+.+ ..+.+||..+.+...
T Consensus 251 ~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 251 SL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 22 36777777654 357888887765443
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.17 E-value=0.11 Score=51.17 Aligned_cols=175 Identities=10% Similarity=0.032 Sum_probs=108.1
Q ss_pred EEEcCCCCEEEEEecC--------------CeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEe--CC--CcEE
Q 008050 292 CSYSHDGNLLATSSLS--------------GVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSS--AD--RTAR 353 (579)
Q Consensus 292 ~~~spdg~~latgs~d--------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s--~d--g~I~ 353 (579)
--|+++|++|+..... +.|+..++...+... +... . +..|++++++|+-.. .+ ..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 4468889988887653 357777776655333 2211 1 236778888888776 33 4555
Q ss_pred EEeCCCCeeEEEecccCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 008050 354 LWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGTTSF-DKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLD 432 (579)
Q Consensus 354 iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~d 432 (579)
..++++.....+..+.. ..|+++++.|+-.+. ...|...++..+.......+ ... ..++|++.+|+-....
T Consensus 133 ~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGG
T ss_pred EEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcC
Confidence 55688776666665543 346777888776665 67899999877765554432 222 3466888887776544
Q ss_pred --CeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 008050 433 --ALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGG--EDNTCRIWDLRK 484 (579)
Q Consensus 433 --g~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs--~Dg~I~iwDl~~ 484 (579)
..|..-++..+.. ..+. ...+ ..|++++.+|+.++ ..+.|...++..
T Consensus 205 ~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 205 RDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp GTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred CCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 3676677765442 2332 1223 33777888887664 235677777653
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.021 Score=57.36 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=107.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCeeEEEEeCC-CCCeEEEEEc--cCCCEEEEE--eCCCcEEEEeCCCCee-EEEeccc-C
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQKFSALKGH-TERATDVTFS--PVSNHVATS--SADRTARLWNTDGSLL-NTFQGHL-D 370 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s--p~~~~l~s~--s~dg~I~iwd~~~~~~-~~~~~h~-~ 370 (579)
+.++++++.||.|+-+|..+|+....+... ..++....-. +.+..++.+ +.||.|..++..+... ..+.... -
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 357889999999999999999999988754 1222221100 112234433 5799999999654322 2221100 0
Q ss_pred CeEEEEEe-----------cCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-C------eEEEEEc-----CCCCEEE
Q 008050 371 RLARMAFH-----------PSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSR-S------VYGIAFH-----PDGSLAA 427 (579)
Q Consensus 371 ~I~~l~~s-----------p~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~-~------V~~l~~s-----pdg~~l~ 427 (579)
...-+... ..+..+++|+.+|.+...|+.+|+.+..+..... . ..|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 00001111 1456889999999999999999999988753221 0 1111111 1235677
Q ss_pred EEeCCCeEEEEeCCCCeEEEEEe-----cCCCC--e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 008050 428 SCGLDALARVWDLRTGRSILALE-----GHVKP--V-LGISFSPNGYHLATGGEDNTCRIWDLRKRKSLY 489 (579)
Q Consensus 428 sg~~dg~I~iwd~~~~~~~~~~~-----~~~~~--I-~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~ 489 (579)
.+..+..+.+.+ ++|+ +..++ ..... + .+..++.++.+ ++++.||.|.-+|..++..+.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 777777777777 4554 22111 11000 0 00001123555 457889999999998888776
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.01 E-value=0.027 Score=56.74 Aligned_cols=231 Identities=13% Similarity=0.023 Sum_probs=112.5
Q ss_pred CCCEEEEEec-CCeEEEEeCCC-CeeEEEEeCCC--CC-eEEEEEccCCCEEEEEeC-C---------CcEEEEeCCCCe
Q 008050 297 DGNLLATSSL-SGVVKIWSMPR-LQKFSALKGHT--ER-ATDVTFSPVSNHVATSSA-D---------RTARLWNTDGSL 361 (579)
Q Consensus 297 dg~~latgs~-dg~I~iwd~~~-~~~~~~l~~h~--~~-V~~l~~sp~~~~l~s~s~-d---------g~I~iwd~~~~~ 361 (579)
++.+++.|+. ...+.+||..+ ......+..-. .. -.+++. -++.+++.|+. + ..+.+||.....
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5667777764 35688899864 12222222111 11 112222 24566666665 2 468888876654
Q ss_pred eEEEeccc--CCeEEEEEecCCCEEEEEeCC---------------------------------------CeEEEEECCC
Q 008050 362 LNTFQGHL--DRLARMAFHPSGKYLGTTSFD---------------------------------------KTWRLWDVDT 400 (579)
Q Consensus 362 ~~~~~~h~--~~I~~l~~sp~~~~l~s~s~d---------------------------------------g~I~lwd~~~ 400 (579)
-..+.... ......+...++++++.|+.+ ..+.+||..+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 177 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC
Confidence 44433221 111121222467777788754 5799999988
Q ss_pred CcEEEEEecCC-CCe-EEEEEcCCCCEEEEEeC------CCeEEEEeC--CCCeEEEEEec---CCCCeEEEEEcCCCCE
Q 008050 401 GVELLLQEGHS-RSV-YGIAFHPDGSLAASCGL------DALARVWDL--RTGRSILALEG---HVKPVLGISFSPNGYH 467 (579)
Q Consensus 401 ~~~~~~~~~~~-~~V-~~l~~spdg~~l~sg~~------dg~I~iwd~--~~~~~~~~~~~---~~~~I~si~~sp~g~~ 467 (579)
..-...-.... ... .+++.. ++.+++.|+. ...+.+||+ .+.+- ..+.. ........+...++++
T Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 178 QQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBSCEEEEETTEE
T ss_pred CcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCcccccceEEEECCEE
Confidence 76544332211 111 233333 5667777764 345777877 33322 11111 1111111122235667
Q ss_pred EEEEeCC----------------------CcEEEEECCCCce--eEEEeCCCCCeEEEEEeeCCCeEEEEEECCC-----
Q 008050 468 LATGGED----------------------NTCRIWDLRKRKS--LYVIPAHSNLISQVKFEPQEGYFLVTGSYDM----- 518 (579)
Q Consensus 468 l~tgs~D----------------------g~I~iwDl~~~~~--~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg----- 518 (579)
++.|+.+ ..+.+||+.+.+- +..+......-..+ .. ++.+++.|+.++
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~-~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PW-NNSLLIIGGETAGGKAV 332 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EE-TTEEEEEEEECGGGCEE
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--Ee-CCEEEEEeeeCCCCCEe
Confidence 7777632 2577899876543 32332222222222 22 467777777542
Q ss_pred -EEEEEECCCCeEEEE
Q 008050 519 -TVKVWSGRDFKLVKS 533 (579)
Q Consensus 519 -~I~iwd~~~~~~~~~ 533 (579)
.|.++++++++.+..
T Consensus 333 ~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEEC-CCSCEEE
T ss_pred eeEEEEEEcCcEeEee
Confidence 466667777665543
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.98 E-value=0.062 Score=62.95 Aligned_cols=257 Identities=9% Similarity=0.081 Sum_probs=148.0
Q ss_pred CCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCeeEEEecccCCeEEEEEecCCCEEEE
Q 008050 307 SGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGSLLNTFQGHLDRLARMAFHPSGKYLGT 386 (579)
Q Consensus 307 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~h~~~I~~l~~sp~~~~l~s 386 (579)
...|.|.|+.++..+.. ..-.--+.-.+|..+.|+.-. ..++.|+|++.+....-......|.--.|-... .|+.
T Consensus 47 ~~~vvIidl~~~~~~~r---rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l~l 121 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR---RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVAL 121 (1630)
T ss_pred CceEEEEECCCCCCccc---ccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC-eeEE
Confidence 34788888887655422 111223344677777776664 689999998765433333334566667776444 3333
Q ss_pred EeCCCeEEEEECCCC-cEEEEEecC----CCCeEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCeEEEEEecCCC
Q 008050 387 TSFDKTWRLWDVDTG-VELLLQEGH----SRSVYGIAFHPDGSLAASCG-------LDALARVWDLRTGRSILALEGHVK 454 (579)
Q Consensus 387 ~s~dg~I~lwd~~~~-~~~~~~~~~----~~~V~~l~~spdg~~l~sg~-------~dg~I~iwd~~~~~~~~~~~~~~~ 454 (579)
. .+..|+.|++... .....+..| +..|..-..+++.++++..| ..|.+.+|....+. -..+.||..
T Consensus 122 V-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~ 199 (1630)
T 1xi4_A 122 V-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA 199 (1630)
T ss_pred E-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHh
Confidence 3 2578999999643 333333333 45677777888888776544 35788899876432 234455554
Q ss_pred CeEEEEEcC--C-CCEEEEEeC---CCcEEEEECCCC---ceeE------EE-eC--CCCCeEEEEEeeCCCeEEEEEEC
Q 008050 455 PVLGISFSP--N-GYHLATGGE---DNTCRIWDLRKR---KSLY------VI-PA--HSNLISQVKFEPQEGYFLVTGSY 516 (579)
Q Consensus 455 ~I~si~~sp--~-g~~l~tgs~---Dg~I~iwDl~~~---~~~~------~~-~~--~~~~V~~v~~sp~~~~~l~sgs~ 516 (579)
....+.+.. . ...++.+.. .+++.|.++... .... .+ .. ....-..+..++. ..++..-+.
T Consensus 200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k-~g~iy~itk 278 (1630)
T 1xi4_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITK 278 (1630)
T ss_pred hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc-cCEEEEEec
Confidence 433333321 1 122222221 368888888542 1111 11 11 1233345667765 345666678
Q ss_pred CCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCC
Q 008050 517 DMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 517 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
-|.|.+||+.++.++..-+-....|...+-+....-++.....|.|.--.++..+
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred CceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 8999999999999887666555556555544433345555567766666655443
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.94 E-value=0.018 Score=57.99 Aligned_cols=229 Identities=11% Similarity=0.018 Sum_probs=113.2
Q ss_pred CCCEEEEEeCC-CcEEEEeCCC--CeeEEEeccc--CCe-EEEEEecCCCEEEEEeC-C---------CeEEEEECCCCc
Q 008050 339 VSNHVATSSAD-RTARLWNTDG--SLLNTFQGHL--DRL-ARMAFHPSGKYLGTTSF-D---------KTWRLWDVDTGV 402 (579)
Q Consensus 339 ~~~~l~s~s~d-g~I~iwd~~~--~~~~~~~~h~--~~I-~~l~~sp~~~~l~s~s~-d---------g~I~lwd~~~~~ 402 (579)
++.+++.|+.+ ..+.+||... ..-..+.... .+. .+++.. ++.+++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 34455555433 4577777642 2222222111 111 122222 5666666665 2 468899998876
Q ss_pred EEEEEecC--CCCeEEEEEcCCCCEEEEEeCC---------------------------------------CeEEEEeCC
Q 008050 403 ELLLQEGH--SRSVYGIAFHPDGSLAASCGLD---------------------------------------ALARVWDLR 441 (579)
Q Consensus 403 ~~~~~~~~--~~~V~~l~~spdg~~l~sg~~d---------------------------------------g~I~iwd~~ 441 (579)
-....... ...-.++.. .++.+++.|+.+ ..+.+||+.
T Consensus 98 W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 44432211 111122222 467788888864 578999998
Q ss_pred CCeEEEEEecCC-CCe-EEEEEcCCCCEEEEEeC------CCcEEEEEC--CCCceeE--EEeCCCCCeE-EEEEeeCCC
Q 008050 442 TGRSILALEGHV-KPV-LGISFSPNGYHLATGGE------DNTCRIWDL--RKRKSLY--VIPAHSNLIS-QVKFEPQEG 508 (579)
Q Consensus 442 ~~~~~~~~~~~~-~~I-~si~~sp~g~~l~tgs~------Dg~I~iwDl--~~~~~~~--~~~~~~~~V~-~v~~sp~~~ 508 (579)
+.+-...-.... ..- .+++.. ++++++.|+. ...+.+||+ .+.+-.. .+........ ++... ++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~~ 253 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--ND 253 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE--TT
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE--CC
Confidence 775433221111 111 233332 5666666653 345777887 3332111 1111111111 12222 36
Q ss_pred eEEEEEECC----------------------CEEEEEECCC--CeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCC----
Q 008050 509 YFLVTGSYD----------------------MTVKVWSGRD--FKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDR---- 560 (579)
Q Consensus 509 ~~l~sgs~d----------------------g~I~iwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg---- 560 (579)
.+++.|+.+ ..+.+||..+ |..+..+......-.++. -++++++.||.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKA 331 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCE
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCE
Confidence 777777632 2577898765 555655543322222332 3678888888653
Q ss_pred --eEEEEEcCCCCccc
Q 008050 561 --WIKLWSTRNKGDEH 574 (579)
Q Consensus 561 --~I~iW~~~~~~~~~ 574 (579)
.|.++++++++...
T Consensus 332 ~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEC-CCSCEE
T ss_pred eeeEEEEEEcCcEeEe
Confidence 46666887766543
No 340
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.93 E-value=0.056 Score=55.40 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=95.3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------
Q 008050 421 PDGSLAASCGLDALARVWDLRTGRSILALEGH----VKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK---------- 486 (579)
Q Consensus 421 pdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~----~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~---------- 486 (579)
.+|.-++.+- ++.||..++......+.++.. ...|..+..+|+|++|+..+ +..|.|..+..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3444444443 577888887754445555433 23588899999999999886 4579998887321
Q ss_pred --eeEEEeC------CCCCeEEEEEeeCC--CeEEEEEECCCEEEEEECCCC--eEEEEe---------cCCCCcEEEEE
Q 008050 487 --SLYVIPA------HSNLISQVKFEPQE--GYFLVTGSYDMTVKVWSGRDF--KLVKSL---------SGHEAKVTSLD 545 (579)
Q Consensus 487 --~~~~~~~------~~~~V~~v~~sp~~--~~~l~sgs~dg~I~iwd~~~~--~~~~~l---------~~h~~~V~~l~ 545 (579)
..+.+.. ....|..+.|+|-+ +..|++-..|+.|++||+... ++. .+ ..+...|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 1223332 24679999999964 347888899999999998752 111 22 22335689999
Q ss_pred EcCCCCEEEEEE--cCCeEEEE
Q 008050 546 IHPDEQSIATVS--HDRWIKLW 565 (579)
Q Consensus 546 ~s~dg~~L~s~s--~Dg~I~iW 565 (579)
|..++-.|+..+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 77777643
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.061 Score=53.87 Aligned_cols=188 Identities=10% Similarity=0.001 Sum_probs=104.0
Q ss_pred CEEEEEeCCCcEEEEeC-CCCeeEEEecc-cCCeEEEEEe--c-CCCEEEEE-eCCCeEEEEECCCCcEEEEEec----C
Q 008050 341 NHVATSSADRTARLWNT-DGSLLNTFQGH-LDRLARMAFH--P-SGKYLGTT-SFDKTWRLWDVDTGVELLLQEG----H 410 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~-~~~~~~~~~~h-~~~I~~l~~s--p-~~~~l~s~-s~dg~I~lwd~~~~~~~~~~~~----~ 410 (579)
.++++++.||.|.-+|. +|+....+... ..++....-. + ++..++.. +.||.|+.++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 57889999999999994 56666666544 1222221100 1 22333333 6899999999988855543321 1
Q ss_pred CCCeEE---EEE-----cCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCC--C-----eEEEEEc-----CCCCEEEE
Q 008050 411 SRSVYG---IAF-----HPDGSLAASCGLDALARVWDLRTGRSILALEGHVK--P-----VLGISFS-----PNGYHLAT 470 (579)
Q Consensus 411 ~~~V~~---l~~-----spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~-----I~si~~s-----p~g~~l~t 470 (579)
..++.. ..+ ...+..+++|+.+|.+...|+++|+.+..+..... . ..|.... ..+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 01345888999999999999999999998864321 0 1111110 12456777
Q ss_pred EeCCCcEEEEECCCCceeEEEe-----CCCCC--e-EEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEE
Q 008050 471 GGEDNTCRIWDLRKRKSLYVIP-----AHSNL--I-SQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVK 532 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~~~~~~~~-----~~~~~--V-~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~ 532 (579)
|..+..+.+.+ ++++ +..+. ..... + .+-..+.+ +.+ +.++.||.|.-+|..++..+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~D-g~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKD-GMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSS-SCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccC-CcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777766 4443 22211 10000 0 00000111 333 446888888888888887765
No 342
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.76 E-value=0.15 Score=52.28 Aligned_cols=129 Identities=21% Similarity=0.265 Sum_probs=86.4
Q ss_pred CcEEEEeCC-CCeeEEEecc----cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc------------EEEEEec---
Q 008050 350 RTARLWNTD-GSLLNTFQGH----LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV------------ELLLQEG--- 409 (579)
Q Consensus 350 g~I~iwd~~-~~~~~~~~~h----~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~------------~~~~~~~--- 409 (579)
+.||.-++. +...+.+... ...|..+..+|+|++|+..+ +..|.+..+..+. ....+.-
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 455555543 3333333332 33678899999999998885 5578888776221 1122221
Q ss_pred ---CCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCe--EEEEE---------ecCCCCeEEEEEcCCCCEEEEEe
Q 008050 410 ---HSRSVYGIAFHP---DGSLAASCGLDALARVWDLRTGR--SILAL---------EGHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 410 ---~~~~V~~l~~sp---dg~~l~sg~~dg~I~iwd~~~~~--~~~~~---------~~~~~~I~si~~sp~g~~l~tgs 472 (579)
....|..+.||| .+..|++-..|+.|++||+.... +. .+ ......|.+++|..+|-.|+..+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 246799999999 45689999999999999998621 22 22 12336789999999988888766
Q ss_pred --CCCcEEEE
Q 008050 473 --EDNTCRIW 480 (579)
Q Consensus 473 --~Dg~I~iw 480 (579)
..|.|+-.
T Consensus 199 ~t~~GDIYAl 208 (452)
T 3pbp_A 199 TTEGGDIFAF 208 (452)
T ss_dssp CTTSCEEEEE
T ss_pred cCCCCCEEEE
Confidence 77877643
No 343
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.73 E-value=0.59 Score=47.54 Aligned_cols=260 Identities=8% Similarity=-0.045 Sum_probs=125.3
Q ss_pred CEEEEEecCCeEEEEeCCC-CeeEEEE--eCCCCCeEEEEEcc-CCCEEEEEeCCC----cEEEEeCCCCeeEEEec---
Q 008050 299 NLLATSSLSGVVKIWSMPR-LQKFSAL--KGHTERATDVTFSP-VSNHVATSSADR----TARLWNTDGSLLNTFQG--- 367 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~-~~~~~~l--~~h~~~V~~l~~sp-~~~~l~s~s~dg----~I~iwd~~~~~~~~~~~--- 367 (579)
..|++|+..| +.+++... +.....+ ......|.+|++.| +...|++++..| .|...+-.+..-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence 4677787777 55555332 2222222 22345799999998 233444454444 44444333332222211
Q ss_pred -----------ccCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCcEEEEEec-------------------CCCCeE
Q 008050 368 -----------HLDRLARMAFHPS--GKYLGTTSFDKTWRLWDVDTGVELLLQEG-------------------HSRSVY 415 (579)
Q Consensus 368 -----------h~~~I~~l~~sp~--~~~l~s~s~dg~I~lwd~~~~~~~~~~~~-------------------~~~~V~ 415 (579)
....|.++++.|. ...|++++..+.|...+- .++....... ....+.
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 1124778888873 456666666666655432 2222222111 123578
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEecC-------------CCCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 008050 416 GIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEGH-------------VKPVLGISFSPN-GYHLATGGEDNTCRIW 480 (579)
Q Consensus 416 ~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-------------~~~I~si~~sp~-g~~l~tgs~Dg~I~iw 480 (579)
+|.++|. ...++.+..++.|...+ ..++....+... ...+.+|.+.++ ...|++++..+ |...
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 8999873 34444454444444332 233332222110 124889999985 45677776544 5544
Q ss_pred ECCCCceeEEEeC--CC---CCeEEEEEeeCCCeEEEEEEC-----------CCEEEEEECC----CCeEEEE-ecCCCC
Q 008050 481 DLRKRKSLYVIPA--HS---NLISQVKFEPQEGYFLVTGSY-----------DMTVKVWSGR----DFKLVKS-LSGHEA 539 (579)
Q Consensus 481 Dl~~~~~~~~~~~--~~---~~V~~v~~sp~~~~~l~sgs~-----------dg~I~iwd~~----~~~~~~~-l~~h~~ 539 (579)
+- .++....+.. .. ..+..+.++|.+...|+.+.. ++...+|... +++.+.. +.....
T Consensus 259 ~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~ 337 (394)
T 3b7f_A 259 DR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQA 337 (394)
T ss_dssp ET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSC
T ss_pred CC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccc
Confidence 42 2333322221 11 345677787643333444431 2334455433 3443321 111000
Q ss_pred ----cEEEEEEcCC-CCEEEEEEcCCeEE
Q 008050 540 ----KVTSLDIHPD-EQSIATVSHDRWIK 563 (579)
Q Consensus 540 ----~V~~l~~s~d-g~~L~s~s~Dg~I~ 563 (579)
....++++|. ...|+.++.++.|.
T Consensus 338 ~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 338 WLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred cceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 1135778774 34577676555544
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.72 E-value=0.66 Score=49.10 Aligned_cols=254 Identities=14% Similarity=0.128 Sum_probs=144.2
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEEEeCC-------------------------CCCeEE--EEEc---cCCCEEEEEeC-
Q 008050 300 LLATSSLSGVVKIWSMPRLQKFSALKGH-------------------------TERATD--VTFS---PVSNHVATSSA- 348 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~~~~l~~h-------------------------~~~V~~--l~~s---p~~~~l~s~s~- 348 (579)
.+.+|+..|.|+|+-+.+++.+..+.-. .+.... +++. -||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3567889999999999999888776421 111122 2222 14667777664
Q ss_pred CCcEEEEeCCCCeeEEEe--cccCCeEEEEEe--cCCCEEEEEeC-------CCeE------------EEEECCCCcEEE
Q 008050 349 DRTARLWNTDGSLLNTFQ--GHLDRLARMAFH--PSGKYLGTTSF-------DKTW------------RLWDVDTGVELL 405 (579)
Q Consensus 349 dg~I~iwd~~~~~~~~~~--~h~~~I~~l~~s--p~~~~l~s~s~-------dg~I------------~lwd~~~~~~~~ 405 (579)
+..|...+++.-....+. .....+..+.|- |+..|++.++. ||.. ...|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 456666665553332222 234556677775 56678777764 2221 112222222211
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCC---------------eEEEEeC-------------------------CC---
Q 008050 406 LQEGHSRSVYGIAFHPDGSLAASCGLDA---------------LARVWDL-------------------------RT--- 442 (579)
Q Consensus 406 ~~~~~~~~V~~l~~spdg~~l~sg~~dg---------------~I~iwd~-------------------------~~--- 442 (579)
... -.+..-.+...++|.+.++.+.+. .+.++|+ +.
T Consensus 232 Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 111 112223345566777776665432 3444443 22
Q ss_pred -CeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------e-------eEEEeCCCCCeEEEEEeeCC
Q 008050 443 -GRSILALEGHVKPVLGISFSPNGYHLATGG-EDNTCRIWDLRKRK------S-------LYVIPAHSNLISQVKFEPQE 507 (579)
Q Consensus 443 -~~~~~~~~~~~~~I~si~~sp~g~~l~tgs-~Dg~I~iwDl~~~~------~-------~~~~~~~~~~V~~v~~sp~~ 507 (579)
+..+..+-.-......+.++|+|+++++++ .+.++.++|+.+.. . ....... -......|+++
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~- 388 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGR- 388 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSS-
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCC-
Confidence 111111111223356788999999988877 57899999987521 1 2223332 33456899986
Q ss_pred CeEEEEEECCCEEEEEECCCC----------eEEEEecCCCCcEEEEEE------cCCCCEEEEEE
Q 008050 508 GYFLVTGSYDMTVKVWSGRDF----------KLVKSLSGHEAKVTSLDI------HPDEQSIATVS 557 (579)
Q Consensus 508 ~~~l~sgs~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~L~s~s 557 (579)
|+...+-.-|..|..|++... ..+..+..|-. +-.+.- .++|++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 565566667999999997653 46667766654 333333 56899998875
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.43 E-value=0.084 Score=61.86 Aligned_cols=230 Identities=14% Similarity=0.129 Sum_probs=137.1
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--CeeEEEecc-
Q 008050 292 CSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG--SLLNTFQGH- 368 (579)
Q Consensus 292 ~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~h- 368 (579)
.-.+|..+.||.-. ..++.|||+.+...+..+.- ...|..-.|-.... |+..+ +..|+-|++.+ .+...+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34677777777765 78999999998888877664 34576777765443 33332 36799999865 344444433
Q ss_pred ---cCCeEEEEEecCCCEEEEEe-------CCCeEEEEECCCCcEEEEEecCCCCeEEEEEcC---CCCEEEEEeC---C
Q 008050 369 ---LDRLARMAFHPSGKYLGTTS-------FDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHP---DGSLAASCGL---D 432 (579)
Q Consensus 369 ---~~~I~~l~~sp~~~~l~s~s-------~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~sp---dg~~l~sg~~---d 432 (579)
...|..-..+++.++++..| -.|.+.+|..+.+.. ..+.||......+.+.. ...+++.+.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 35566777788888776544 247888998865432 33446655444433321 1223333322 3
Q ss_pred CeEEEEeCCCC---eEEE------EEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEE
Q 008050 433 ALARVWDLRTG---RSIL------ALE---GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQ 500 (579)
Q Consensus 433 g~I~iwd~~~~---~~~~------~~~---~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~ 500 (579)
+.++|.++... .... .+. ....-..++..++.-..++.-+.-|.|.+||+.++.+++.-......|..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence 78889888542 1111 111 11223456777887778888889999999999999988766554444444
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
.+.+...+.++. ....|.|.-..+..
T Consensus 306 ~~~~~~~~g~~~-vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 306 TAPHEATAGIIG-VNRKGQVLSVCVEE 331 (1630)
T ss_pred eccCCCCCceEE-EcCCceEEEEEEcc
Confidence 443332222222 23455544444443
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.33 E-value=0.21 Score=46.48 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=92.3
Q ss_pred CEEEEEecCCeEEEEeCCCCe------eEEEEeC-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------eeEE
Q 008050 299 NLLATSSLSGVVKIWSMPRLQ------KFSALKG-HTERATDVTFSPVSNHVATSSADRTARLWNTDGS-------LLNT 364 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~------~~~~l~~-h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-------~~~~ 364 (579)
.+|++...| +++.=....+. ....+-. -=..+.+++|+|++.+.++ .+|.+.-.+.... .-..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 345555555 55554454443 1222221 1247889999998886666 6676655554221 1111
Q ss_pred Ee--cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcE-------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008050 365 FQ--GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVE-------LLLQEGHSRSVYGIAFHPDGSLAASCGLDALA 435 (579)
Q Consensus 365 ~~--~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~-------~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I 435 (579)
+- +.. ...++.|.++|.+.++ .||.|+-++--+... ..+-...-..+..|.|.|+|.+.++. |+.+
T Consensus 82 IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 82 IGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred ecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 11 111 1478899999987777 569998887633111 11111222467899999999877776 7775
Q ss_pred EEEeCCCCe------EEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008050 436 RVWDLRTGR------SILALE-GHVKPVLGISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 436 ~iwd~~~~~------~~~~~~-~~~~~I~si~~sp~g~~l~tgs~Dg~I 477 (579)
.-+..-++. ....+. ..-....-+.|.++|.+.++. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 433322111 011111 122223446678887666655 5533
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.26 E-value=0.99 Score=45.85 Aligned_cols=257 Identities=7% Similarity=-0.051 Sum_probs=125.3
Q ss_pred CCCeeEEEEcC-CCCEEEEEecCC----eEEEEeCCCCeeEEEEeC--------------CCCCeEEEEEccC--CCEEE
Q 008050 286 DRPLSGCSYSH-DGNLLATSSLSG----VVKIWSMPRLQKFSALKG--------------HTERATDVTFSPV--SNHVA 344 (579)
Q Consensus 286 ~~~I~~~~~sp-dg~~latgs~dg----~I~iwd~~~~~~~~~l~~--------------h~~~V~~l~~sp~--~~~l~ 344 (579)
...|.++++.| +...|.+++..| .|... .+.++....+.. +...|.++++.+. ...|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35689999998 334444455454 34333 233333222221 1125778999862 45566
Q ss_pred EEeCCCcEEEEeCCCCeeEEEec-------------------ccCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCcEE
Q 008050 345 TSSADRTARLWNTDGSLLNTFQG-------------------HLDRLARMAFHPS-GKYLGTTSFDKTWRLWDVDTGVEL 404 (579)
Q Consensus 345 s~s~dg~I~iwd~~~~~~~~~~~-------------------h~~~I~~l~~sp~-~~~l~s~s~dg~I~lwd~~~~~~~ 404 (579)
.++..+.|...+-.++....+.. ....+.+|.++|. ...|+++..++.|...+- .++..
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW 211 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW 211 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence 66666666655544443333321 1235778889874 445666655555544322 23222
Q ss_pred EEEec-----C--------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEec--CC---CCeEEEEEcC-C
Q 008050 405 LLQEG-----H--------SRSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEG--HV---KPVLGISFSP-N 464 (579)
Q Consensus 405 ~~~~~-----~--------~~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~--~~---~~I~si~~sp-~ 464 (579)
..... + ...+.+|.++++ ...|+.++..+ |...+ ..++....+.. .. ..+.++.++| +
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCC
Confidence 22211 0 134889999985 35666666544 44433 23333333221 11 2356788876 3
Q ss_pred CCEEEEEeC-----------CCcEEEEECCC-CceeEEEeC--CC--C----CeEEEEEeeCCCeEEEEEECCCEEEEEE
Q 008050 465 GYHLATGGE-----------DNTCRIWDLRK-RKSLYVIPA--HS--N----LISQVKFEPQEGYFLVTGSYDMTVKVWS 524 (579)
Q Consensus 465 g~~l~tgs~-----------Dg~I~iwDl~~-~~~~~~~~~--~~--~----~V~~v~~sp~~~~~l~sgs~dg~I~iwd 524 (579)
...|+++.. ++...||.... ++.-..+.. .. . ....++++|.+...|+.++.++.|..-+
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~ 369 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA 369 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC
Confidence 344555432 23345555443 333333321 11 0 1135778775445455666566554332
Q ss_pred CCCCeEEEEecCCCCcEEEEEEc
Q 008050 525 GRDFKLVKSLSGHEAKVTSLDIH 547 (579)
Q Consensus 525 ~~~~~~~~~l~~h~~~V~~l~~s 547 (579)
..++.-..+..+-..+.++.|.
T Consensus 370 -D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 370 -DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp -STTSBCEEEECSCSCEEEEEEE
T ss_pred -CCCCCceEcccCCCCeeEEEEe
Confidence 2232222333333457777664
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.26 E-value=0.13 Score=57.00 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=105.5
Q ss_pred cCCCEEEEEeCC----CcEEEEeCCCCeeEEEe-c------ccCC-eEEEEEec-CCCEEEEEeCC------CeEEEEEC
Q 008050 338 PVSNHVATSSAD----RTARLWNTDGSLLNTFQ-G------HLDR-LARMAFHP-SGKYLGTTSFD------KTWRLWDV 398 (579)
Q Consensus 338 p~~~~l~s~s~d----g~I~iwd~~~~~~~~~~-~------h~~~-I~~l~~sp-~~~~l~s~s~d------g~I~lwd~ 398 (579)
-++.+++.||.+ ..+.+||........+. . ...+ -.+++... ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777653 46788886555444443 1 1111 12333333 67777777754 35889999
Q ss_pred CCCcEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCeEEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 008050 399 DTGVELLLQEGH-SRSVYGIAFHPDGSLAASCGLDA--LARVWDLRTGRSILALE-----GHVKPVLGISFSPN-GYHLA 469 (579)
Q Consensus 399 ~~~~~~~~~~~~-~~~V~~l~~spdg~~l~sg~~dg--~I~iwd~~~~~~~~~~~-----~~~~~I~si~~sp~-g~~l~ 469 (579)
.+..-...-... ...-.+++...++.+++.||.++ .+.+||..+..-...-. .......++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 886544332111 11112333334788888888655 68999998875332211 01111233555554 66777
Q ss_pred EEeC--C-----CcEEEEECCCCce-----eEEEeC---CCCCeEEEEEeeCCCeEEEEEEC--------CCEEEEEECC
Q 008050 470 TGGE--D-----NTCRIWDLRKRKS-----LYVIPA---HSNLISQVKFEPQEGYFLVTGSY--------DMTVKVWSGR 526 (579)
Q Consensus 470 tgs~--D-----g~I~iwDl~~~~~-----~~~~~~---~~~~V~~v~~sp~~~~~l~sgs~--------dg~I~iwd~~ 526 (579)
.|+. + +.+.+||+.+... ...+.. ....-.++....+ +.+++.|+. ...|.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP-RKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET-TEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC-CEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4588999887761 112211 1111122333322 677777774 3459999998
Q ss_pred CCeEE
Q 008050 527 DFKLV 531 (579)
Q Consensus 527 ~~~~~ 531 (579)
+.+..
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 77654
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.85 E-value=0.18 Score=55.86 Aligned_cols=190 Identities=10% Similarity=0.020 Sum_probs=100.9
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCcEEEEE-e------cCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEeCC
Q 008050 380 SGKYLGTTSFD----KTWRLWDVDTGVELLLQ-E------GHSRSVYGIAFHP-DGSLAASCGLDA------LARVWDLR 441 (579)
Q Consensus 380 ~~~~l~s~s~d----g~I~lwd~~~~~~~~~~-~------~~~~~V~~l~~sp-dg~~l~sg~~dg------~I~iwd~~ 441 (579)
++..++.|+.+ ..+.+||..++...... . .....-.+++... ++.+++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 44555555542 45778888776554433 1 1111122334443 677888887543 57889988
Q ss_pred CCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEE-----eCCCCCeEEEEEeeCCCeEEEE
Q 008050 442 TGRSILALEGH-VKPVLGISFSPNGYHLATGGEDN--TCRIWDLRKRKSLYVI-----PAHSNLISQVKFEPQEGYFLVT 513 (579)
Q Consensus 442 ~~~~~~~~~~~-~~~I~si~~sp~g~~l~tgs~Dg--~I~iwDl~~~~~~~~~-----~~~~~~V~~v~~sp~~~~~l~s 513 (579)
+.+-...-... ...-.+++...++++++.|+.++ .+.+||..+..-...- .........+.+....+.+++.
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 76432221111 11112333334788888887654 6999998876432221 1111222335555433667777
Q ss_pred EEC--C-----CEEEEEECCCCe--------EEEEec-CCCCcEEEEEEcCCCCEEEEEEcC--------CeEEEEEcCC
Q 008050 514 GSY--D-----MTVKVWSGRDFK--------LVKSLS-GHEAKVTSLDIHPDEQSIATVSHD--------RWIKLWSTRN 569 (579)
Q Consensus 514 gs~--d-----g~I~iwd~~~~~--------~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~D--------g~I~iW~~~~ 569 (579)
|+. + +.+.+||+.+.. .+.... ...... ++....++++++.||.+ ..|.+||+.+
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 765 2 468999977654 333311 111111 22333336777777743 4588888876
Q ss_pred C
Q 008050 570 K 570 (579)
Q Consensus 570 ~ 570 (579)
.
T Consensus 636 ~ 636 (695)
T 2zwa_A 636 E 636 (695)
T ss_dssp T
T ss_pred C
Confidence 4
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.84 E-value=0.15 Score=49.62 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=116.2
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDGS-LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQE 408 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~-~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~ 408 (579)
.|..|+.... +.+.-. ||.|+.|-.+.. .+..-......|..++..... .++. . ||.|+.|-....-.+-.-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 5666665432 323335 899999974321 111111123456666665332 3333 4 8999999765422111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 008050 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSL 488 (579)
Q Consensus 409 ~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~ 488 (579)
.-...|..++...+. .+.-. +|.|..|-....-.+-.-......|..|+...+. .+.-. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCC
Confidence 112457777766543 33334 8999999754421111111123457777765443 23334 799999976542222
Q ss_pred EEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 489 YVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 489 ~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
..-......|..++.-. ...++. .||.|+.|-......+..-......|..++..... .++. . ||.|+.|-.+
T Consensus 173 g~p~~~~~~v~~i~~G~--~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGI--FHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECS--SEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTT
T ss_pred CCceecCCCeEEEEecC--CEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCC
Confidence 11111124566666543 344444 59999999755432211111112347777665432 3333 3 9999999877
Q ss_pred CCCcc
Q 008050 569 NKGDE 573 (579)
Q Consensus 569 ~~~~~ 573 (579)
.....
T Consensus 246 ~~gq~ 250 (282)
T 3qhy_B 246 RTAPS 250 (282)
T ss_dssp CCCCG
T ss_pred CCccc
Confidence 65543
No 351
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.82 E-value=0.058 Score=50.22 Aligned_cols=140 Identities=12% Similarity=0.048 Sum_probs=82.5
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCee------EEEEeC-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeC--C
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQK------FSALKG-HTERATDVTFSPVSNHVATSSADRTARLWNT--D 358 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~------~~~l~~-h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~--~ 358 (579)
.+..++|+|+|.+.++ .+|.++-.+..+... -..+-. --....++.|.++|.+.++ .||.|.-++. +
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 6779999999997777 688777666544211 111110 0111478999999998887 5699988873 2
Q ss_pred CCe------eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCeEEEEEcCCCCE
Q 008050 359 GSL------LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGV-------ELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 359 ~~~------~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~-------~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
+.. ...-...-..+..|.|.|+|.+.++. |+.++-+..-++. ....-...-.....+.|.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 211 11111122567999999999877666 7776544332211 11111122223445668888876
Q ss_pred EEEEeCCCeE
Q 008050 426 AASCGLDALA 435 (579)
Q Consensus 426 l~sg~~dg~I 435 (579)
+++. +|.+
T Consensus 196 ~~v~--~g~~ 203 (236)
T 1tl2_A 196 FGVQ--GGKF 203 (236)
T ss_dssp EEEE--TTEE
T ss_pred EEEe--CCeE
Confidence 6665 6643
No 352
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.58 E-value=1.9 Score=44.99 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=63.3
Q ss_pred EecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEE--ec------CCCCeEEEEEcCC---CCEEEEEeC--
Q 008050 365 FQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQ--EG------HSRSVYGIAFHPD---GSLAASCGL-- 431 (579)
Q Consensus 365 ~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~--~~------~~~~V~~l~~spd---g~~l~sg~~-- 431 (579)
+.......+.++|.|+|+++++-...+.|++++..++...... .. ....+..|+|+|+ +..|..+..
T Consensus 22 ~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 22 ILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred EECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 3333456689999999986665544457998887655433222 11 2356779999995 444444332
Q ss_pred -----------CCeEEEEeCCCC-------eEEEE-Ee-cCCCCeEEEEEcCCCCEEEEEe
Q 008050 432 -----------DALARVWDLRTG-------RSILA-LE-GHVKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 432 -----------dg~I~iwd~~~~-------~~~~~-~~-~~~~~I~si~~sp~g~~l~tgs 472 (579)
...|.-|++..+ +.+.. +. ........|.|.++|++.++.+
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235555655332 11221 21 1123478999999998777654
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.09 E-value=0.36 Score=46.99 Aligned_cols=239 Identities=13% Similarity=0.059 Sum_probs=119.3
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CeeEEEe
Q 008050 288 PLSGCSYSHDGNLLATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDG-SLLNTFQ 366 (579)
Q Consensus 288 ~I~~~~~spdg~~latgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~-~~~~~~~ 366 (579)
.|..++..... .++. . ||.|+.|-......+..-......|..|+..... .++. . ||.|+.|-.+. ..+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 45555554332 2233 4 8999999765432211111122356666665332 2333 4 89999997432 1111111
Q ss_pred cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEE
Q 008050 367 GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI 446 (579)
Q Consensus 367 ~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~ 446 (579)
.-...|..++... .+.+.-. +|.|+.|-......+-........|..++...+..++ -. ||.|..|-......+
T Consensus 99 ~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCC
Confidence 1124567776653 3444445 9999999765422111111223456666665443222 23 788888865432111
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECC
Q 008050 447 LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGR 526 (579)
Q Consensus 447 ~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~ 526 (579)
..-......|..|+...+. .++. .||.|+.|-......+-.-......|..++.-. ...++. . ||.|+.|-..
T Consensus 173 g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~--~h~~al-~-~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE--WYSLAL-K-NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS--SCEEEE-E-TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC--CEEEEE-E-CCEEEEecCC
Confidence 1111112457777775543 2333 599999997654322211111123466666543 233333 3 9999999655
Q ss_pred CCeEEEEecCCCCcEEEEEEcCC
Q 008050 527 DFKLVKSLSGHEAKVTSLDIHPD 549 (579)
Q Consensus 527 ~~~~~~~l~~h~~~V~~l~~s~d 549 (579)
....+.. ...|.+++....
T Consensus 246 ~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 246 RTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp CCCCGGG----SSCEEEEEECSS
T ss_pred CCccccC----CCCcEEEEECcC
Confidence 4332211 234666666543
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.00 E-value=2.6 Score=44.64 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=111.3
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcEEEEEe-cCCCCeEEEEEc--CCCCEEEEEeC-------CCeE------------E
Q 008050 380 SGKYLGTTSF-DKTWRLWDVDTGVELLLQE-GHSRSVYGIAFH--PDGSLAASCGL-------DALA------------R 436 (579)
Q Consensus 380 ~~~~l~s~s~-dg~I~lwd~~~~~~~~~~~-~~~~~V~~l~~s--pdg~~l~sg~~-------dg~I------------~ 436 (579)
||+||+.-.. +..|...++...++-.... .....+.++.|. |+..++++++. ||.. .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 5778877764 5778888888877665544 455678888887 67778888764 3321 1
Q ss_pred EEeCCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEE--------------------
Q 008050 437 VWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDN---------------TCRIWD-------------------- 481 (579)
Q Consensus 437 iwd~~~~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg---------------~I~iwD-------------------- 481 (579)
..|..+.+...++.. .+....+...++|.+.++.+.+. .+.++|
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 122223322222211 12233455566777777765431 244444
Q ss_pred -----CCC----Cc-eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC------e-------EEEEecCCC
Q 008050 482 -----LRK----RK-SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF------K-------LVKSLSGHE 538 (579)
Q Consensus 482 -----l~~----~~-~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~------~-------~~~~l~~h~ 538 (579)
.+. +. .++.+.. ......+.++|++.+++++|-.+.++.++|+... + .+.... -.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~G 377 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LG 377 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CC
T ss_pred eeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CC
Confidence 332 11 1122221 1223567889986666666667999999998732 1 133333 23
Q ss_pred CcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 539 AKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 539 ~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
-.....+|.++|....|.-.|..|.-|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 4468889999995455556899999999864
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=94.23 E-value=4 Score=45.07 Aligned_cols=232 Identities=11% Similarity=-0.003 Sum_probs=125.1
Q ss_pred eEEE-EcCCCCEEEEEecC-----CeEEEEeCCCCeeEEE-Ee-CCCC------CeEEEEEccCCCEEEEEe--------
Q 008050 290 SGCS-YSHDGNLLATSSLS-----GVVKIWSMPRLQKFSA-LK-GHTE------RATDVTFSPVSNHVATSS-------- 347 (579)
Q Consensus 290 ~~~~-~spdg~~latgs~d-----g~I~iwd~~~~~~~~~-l~-~h~~------~V~~l~~sp~~~~l~s~s-------- 347 (579)
..+. ++|++++++.+-+. ..++++|+.+++.+.. +. .-+. ....++|.. ++.++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 3444 88999988775332 3699999999887631 11 0000 113458874 44444432
Q ss_pred ---CCCcEEEEeCCCC---eeEEEecccCCe-EEEEEecCCCE-----EEEEeC---CCeEEEEECCC--CcEEEEEecC
Q 008050 348 ---ADRTARLWNTDGS---LLNTFQGHLDRL-ARMAFHPSGKY-----LGTTSF---DKTWRLWDVDT--GVELLLQEGH 410 (579)
Q Consensus 348 ---~dg~I~iwd~~~~---~~~~~~~h~~~I-~~l~~sp~~~~-----l~s~s~---dg~I~lwd~~~--~~~~~~~~~~ 410 (579)
....|+.|.+.+. -...+.+....+ .....+.++++ +++.+. ...+++.|... +...... ..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKIN-MP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECC-SC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEee-cC
Confidence 1246888885432 233444433333 33445566663 443332 24567777653 3322222 11
Q ss_pred CCCeEEEEEcCCCCEEEEE----------eCCCeEEEEeCCCCe-------EEEE-Ee-cCCCCeEEEEEcCCCCEEEEE
Q 008050 411 SRSVYGIAFHPDGSLAASC----------GLDALARVWDLRTGR-------SILA-LE-GHVKPVLGISFSPNGYHLATG 471 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg----------~~dg~I~iwd~~~~~-------~~~~-~~-~~~~~I~si~~sp~g~~l~tg 471 (579)
.. . .+..+.++.+++.. ...+.|..+|+.++. .... +. .....+..+.|..+ .++++.
T Consensus 290 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SD-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TT-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Cc-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 11 1 12334455555532 246778899987631 2222 22 23345778888866 566666
Q ss_pred eCCC--cEEEEECCCCc-eeEE-EeCC-CCCeEEEEEeeCCCeEEEEEEC---CCEEEEEECC
Q 008050 472 GEDN--TCRIWDLRKRK-SLYV-IPAH-SNLISQVKFEPQEGYFLVTGSY---DMTVKVWSGR 526 (579)
Q Consensus 472 s~Dg--~I~iwDl~~~~-~~~~-~~~~-~~~V~~v~~sp~~~~~l~sgs~---dg~I~iwd~~ 526 (579)
..++ .|.++|+.++. .... +... .+.+....+.++++.++++.+. -+.+..+|+.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6676 46777776664 2333 3322 2456666666666666666554 3678888876
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=94.14 E-value=4.8 Score=39.53 Aligned_cols=185 Identities=11% Similarity=0.034 Sum_probs=112.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCeeE-------EEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------
Q 008050 296 HDGNLLATSSLSGVVKIWSMPRLQKF-------SALK-GHTERATDVTFSPVSNHVATSSADRTARLWNTDGS------- 360 (579)
Q Consensus 296 pdg~~latgs~dg~I~iwd~~~~~~~-------~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~~------- 360 (579)
++..++++.+.+|.|+-..+...... ..+. ...+.+..+......+.++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45678889999999998876543221 1111 12344556555656677888888898777763211
Q ss_pred ---e---eEEEecccCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCC-------cEEEEEecCCCCeEEEEEcCCCC
Q 008050 361 ---L---LNTFQGHLDRLARMAFHP---SGKYLGTTSFDKTWRLWDVDTG-------VELLLQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 361 ---~---~~~~~~h~~~I~~l~~sp---~~~~l~s~s~dg~I~lwd~~~~-------~~~~~~~~~~~~V~~l~~spdg~ 424 (579)
. ...+. ....|..+.... ++.+|+..+..|.++...+..- .....+. ....+..+....++.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~-~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC-CCCEEEEEEEeCCCC
Confidence 0 01111 223455554433 4678999999999998887432 1111122 245666666655566
Q ss_pred EEEEEeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 008050 425 LAASCGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~ 483 (579)
.++..+.+|.+..+.... |.....+.. ...|.++....++..|++.+..|..+.+++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 788889999999887643 222223332 3456676665566678888999999998874
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.67 E-value=5.8 Score=38.91 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=126.6
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC--------eeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEE----
Q 008050 338 PVSNHVATSSADRTARLWNTDGS--------LLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVEL---- 404 (579)
Q Consensus 338 p~~~~l~s~s~dg~I~iwd~~~~--------~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~---- 404 (579)
++..++++.+.+|.|+-...+.- -...+. ...+.+..+........++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45667888999999988763211 111111 12244555555556678888888998877765321100
Q ss_pred --------EEEecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 008050 405 --------LLQEGHSRSVYGIAFHP---DGSLAASCGLDALARVWDLRT-------GRSILALEGHVKPVLGISFSPNGY 466 (579)
Q Consensus 405 --------~~~~~~~~~V~~l~~sp---dg~~l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~I~si~~sp~g~ 466 (579)
..+ .....|.++.... ++.+++..+..|.++...+.. |.....+.. ...+..+.....+.
T Consensus 86 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 001 1223455554332 456788889999999887642 223333333 44566666555566
Q ss_pred EEEEEeCCCcEEEEECCC---------CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe--------
Q 008050 467 HLATGGEDNTCRIWDLRK---------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-------- 529 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~---------~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-------- 529 (579)
.++..+.+|.+..+.... |.....+.. ...|..+..... +..+++.+..|..+.+.+....
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~-~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKE-NPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTT-CSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECC-CCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 788889999999987643 112222322 344555554433 4557778889999998864321
Q ss_pred -EEEEec-CCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEc
Q 008050 530 -LVKSLS-GHEAKVTSLDIHPDEQSIATVSHDRWIKLWST 567 (579)
Q Consensus 530 -~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~ 567 (579)
.+..+. .....+.++....++..|...+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 222222 22344544433334455666666775544444
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.20 E-value=6.3 Score=37.90 Aligned_cols=194 Identities=9% Similarity=-0.016 Sum_probs=113.4
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEe---CCCCeeEEEEeCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-
Q 008050 286 DRPLSGCSYSHDGNLLATSSLSGVVKIWS---MPRLQKFSALKGHTERATDVTFSP-VSNHVATSSADRTARLWNTDGS- 360 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~dg~I~iwd---~~~~~~~~~l~~h~~~V~~l~~sp-~~~~l~s~s~dg~I~iwd~~~~- 360 (579)
...+..+.......+|+.-+..|.++--. ++.......+. ....|..+.... +..+++..+.+|.++....+.-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34555555555566777777788877543 33222111122 355666664421 4678999999999999884321
Q ss_pred ------eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---------CcEEEEEecCCCCeEEEEEcCCCCE
Q 008050 361 ------LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT---------GVELLLQEGHSRSVYGIAFHPDGSL 425 (579)
Q Consensus 361 ------~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~---------~~~~~~~~~~~~~V~~l~~spdg~~ 425 (579)
....+. ..+.+..+........++..+..|.++.+.... |.....+ .....|..+....++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCCE
Confidence 111122 234556665555666899999999988887632 1111111 22355666665566678
Q ss_pred EEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE--EECC
Q 008050 426 AASCGLDALARVWDLRT-------GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRI--WDLR 483 (579)
Q Consensus 426 l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~i--wDl~ 483 (579)
++..+..|.++...+.. ++-+..+ ...+.+..+........++..+.+|.+.. ++..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 88899999998887632 2233333 23344554443333445666677777777 7653
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.50 E-value=11 Score=39.07 Aligned_cols=225 Identities=14% Similarity=0.118 Sum_probs=116.6
Q ss_pred CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCe----eEEEe---------cccCCeEEEEEecC----CCEEEEEeC--
Q 008050 330 RATDVTFSPVSN-HVATSSADRTARLWNTDGSL----LNTFQ---------GHLDRLARMAFHPS----GKYLGTTSF-- 389 (579)
Q Consensus 330 ~V~~l~~sp~~~-~l~s~s~dg~I~iwd~~~~~----~~~~~---------~h~~~I~~l~~sp~----~~~l~s~s~-- 389 (579)
.-+.|+|.|++. .|+++...|.|++++.++.. +..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 56666788999999855432 22211 11356788999996 333333221
Q ss_pred C----------CeEEEEECCC----------CcEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCC--------------
Q 008050 390 D----------KTWRLWDVDT----------GVELLLQE--GHSRSVYGIAFHPDGSLAASCGLDA-------------- 433 (579)
Q Consensus 390 d----------g~I~lwd~~~----------~~~~~~~~--~~~~~V~~l~~spdg~~l~sg~~dg-------------- 433 (579)
+ ..|.-|.+.. .+.+.... ........|.|.|||.++++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 1455565532 12222222 1223467899999999887766533
Q ss_pred ---eEEEEeCCCC---------------------eEEEEEecCCCCeEEEEEcCC-----CC-EEEEEeCCC----cEEE
Q 008050 434 ---LARVWDLRTG---------------------RSILALEGHVKPVLGISFSPN-----GY-HLATGGEDN----TCRI 479 (579)
Q Consensus 434 ---~I~iwd~~~~---------------------~~~~~~~~~~~~I~si~~sp~-----g~-~l~tgs~Dg----~I~i 479 (579)
.|.-.|.... ..+. -.+|.. ...++|.+. |. +++.+...| .-.|
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 3333344331 0111 123333 557899986 34 344433212 1233
Q ss_pred EECCCC------ceeEEEeCCC-CCeEEEEEeeC------CCeEEEEEECCCEEEEEECCCCe---EEEEe---------
Q 008050 480 WDLRKR------KSLYVIPAHS-NLISQVKFEPQ------EGYFLVTGSYDMTVKVWSGRDFK---LVKSL--------- 534 (579)
Q Consensus 480 wDl~~~------~~~~~~~~~~-~~V~~v~~sp~------~~~~l~sgs~dg~I~iwd~~~~~---~~~~l--------- 534 (579)
..+..+ .++..+..|. ..+..+.|-.. .+.+|+ +...+.|....+.... ....+
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 333322 2444444331 45677777431 123444 4555766666654321 11111
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEE
Q 008050 535 SGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 535 ~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
......+.++.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 11235789999999998877665
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=92.00 E-value=11 Score=37.85 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=109.7
Q ss_pred cCCCCEEEEEecCCeEEEEeCCC---------CeeEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-------
Q 008050 295 SHDGNLLATSSLSGVVKIWSMPR---------LQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD------- 358 (579)
Q Consensus 295 spdg~~latgs~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~------- 358 (579)
-++..++++.+.+|.|+--.+.. +..-..++ ..+.+..+......+.|+..+..|.++-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778999999999999765421 11222233 45566666666667778888888887766521
Q ss_pred ---CCeeE---EEecccCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCc-----EEEEEe-cCCCCeEEEEEcCCC
Q 008050 359 ---GSLLN---TFQGHLDRLARMAFHP---SGKYLGTTSFDKTWRLWDVDTGV-----ELLLQE-GHSRSVYGIAFHPDG 423 (579)
Q Consensus 359 ---~~~~~---~~~~h~~~I~~l~~sp---~~~~l~s~s~dg~I~lwd~~~~~-----~~~~~~-~~~~~V~~l~~spdg 423 (579)
|..+. .+. ....|.++.... .+.+|+.++..|.++...+.... -+..+. .....+..+......
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 11111 122 234555554432 45699999999999998864311 111111 123455555555555
Q ss_pred CEEEEEeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcC-------------------------------
Q 008050 424 SLAASCGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSP------------------------------- 463 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp------------------------------- 463 (579)
..++..+.+|.+..|+... |.....+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888899888886532 11112222 123354444433
Q ss_pred ----CCCEEEEEeCCCcEEEEECC
Q 008050 464 ----NGYHLATGGEDNTCRIWDLR 483 (579)
Q Consensus 464 ----~g~~l~tgs~Dg~I~iwDl~ 483 (579)
++.+|++.+..|..+...+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHH
Confidence 34578899999998888764
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=91.48 E-value=11 Score=36.96 Aligned_cols=230 Identities=10% Similarity=0.063 Sum_probs=127.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCC-----CCeeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---------CcE
Q 008050 338 PVSNHVATSSADRTARLWNTD-----GSLLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT---------GVE 403 (579)
Q Consensus 338 p~~~~l~s~s~dg~I~iwd~~-----~~~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~---------~~~ 403 (579)
++..++++.+.+|.|+--... +.....+. ..+.+..+........|+..+..|.++-+.... |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678888999999877522 11111122 234455555555677888888888877665421 221
Q ss_pred EEE-E-ecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 404 LLL-Q-EGHSRSVYGIAFHP---DGSLAASCGLDALARVWDLRT--------GRSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 404 ~~~-~-~~~~~~V~~l~~sp---dg~~l~sg~~dg~I~iwd~~~--------~~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
+.. + ......|.++.... ++.+++..+.+|.++...+.. |.....+... ..+..+........|+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEE
Confidence 100 0 01223455543333 256788999999999987641 2222233322 45555555555667888
Q ss_pred EeCCCcEEEEECCCC-------ceeEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-------eEEEEe-
Q 008050 471 GGEDNTCRIWDLRKR-------KSLYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-------KLVKSL- 534 (579)
Q Consensus 471 gs~Dg~I~iwDl~~~-------~~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-------~~~~~l- 534 (579)
.+.+|.+..++...- +-+..+.. ....|.++.....+...++..+..|..+..++... +-+..+
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 889999888876431 11222221 23345555544433325777788888888876432 212222
Q ss_pred --cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 535 --SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 535 --~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
......+..+....++..|+..+.+|.+.-..+..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 22222455443333445566777788777666643
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.61 E-value=14 Score=36.40 Aligned_cols=259 Identities=8% Similarity=0.051 Sum_probs=134.1
Q ss_pred CEEEEEecCCeEEEEeCCCCe-------eEEEEe-CCCCCeEEEEEccCCCEEEEEeCCCcEEEEe---CC-------CC
Q 008050 299 NLLATSSLSGVVKIWSMPRLQ-------KFSALK-GHTERATDVTFSPVSNHVATSSADRTARLWN---TD-------GS 360 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~~-------~~~~l~-~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd---~~-------~~ 360 (579)
.++++.+.+|.|+--.+.+.. -...+. ...+.+..+......+.|+.-+..|.++... +. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 467778888888865532211 111111 1234455555555667777777778776554 21 11
Q ss_pred eeEEEe--cccCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCcE-----E--EEEecCCCCeEEEEEcCCCCEEEE
Q 008050 361 LLNTFQ--GHLDRLARMAFHP---SGKYLGTTSFDKTWRLWDVDTGVE-----L--LLQEGHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 361 ~~~~~~--~h~~~I~~l~~sp---~~~~l~s~s~dg~I~lwd~~~~~~-----~--~~~~~~~~~V~~l~~spdg~~l~s 428 (579)
.+..+- .....|..+.... +..+++.++.+|.++...+..... + ..+. ....+..+........|+.
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEE
Confidence 111111 1234555554443 477999999999999988654211 1 1121 2345655555555567888
Q ss_pred EeCCCeEEEEeCC--C---------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceeEE
Q 008050 429 CGLDALARVWDLR--T---------GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR-------KSLYV 490 (579)
Q Consensus 429 g~~dg~I~iwd~~--~---------~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~-------~~~~~ 490 (579)
.+..|.+..+... . |.....+. ....|.++.....+.+|+..+..|.++.-.+... +-+..
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 8889998887765 2 11112222 2345777776666678999999999998875432 11222
Q ss_pred Ee--CCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCeE-------EEEec-CCCCcEEEEEEcC-CCCEEEEEEcC
Q 008050 491 IP--AHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKL-------VKSLS-GHEAKVTSLDIHP-DEQSIATVSHD 559 (579)
Q Consensus 491 ~~--~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~~-------~~~l~-~h~~~V~~l~~s~-dg~~L~s~s~D 559 (579)
+. ...+.+..+..... ...++..+.+|.+.-++...-.. +.-+. .....|.++...+ +...+.+.+.+
T Consensus 242 ~~l~~~~d~lv~~~~~~~-~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~ 320 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDD-DSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDAN 320 (327)
T ss_dssp SCCCTTTCSEEEEEEECT-TCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC------------
T ss_pred EEecCCCCeEEEEEEeCC-CccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecC
Confidence 22 21334444444433 44555567777777776543211 11111 1234566665544 23445555555
Q ss_pred C
Q 008050 560 R 560 (579)
Q Consensus 560 g 560 (579)
|
T Consensus 321 g 321 (327)
T 3uc1_A 321 G 321 (327)
T ss_dssp -
T ss_pred C
Confidence 4
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.39 E-value=15 Score=36.27 Aligned_cols=225 Identities=11% Similarity=0.037 Sum_probs=126.4
Q ss_pred CEEEEEeCCCcEEEEeCCC--------CeeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEEEEC---CC------Cc
Q 008050 341 NHVATSSADRTARLWNTDG--------SLLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDV---DT------GV 402 (579)
Q Consensus 341 ~~l~s~s~dg~I~iwd~~~--------~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~---~~------~~ 402 (579)
..+++.+.+|.|+--.... +-...+. ...+.+..+........|+.-+..|.++.... .. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4677778888887654211 1111111 12344555555556677777778887765543 21 22
Q ss_pred EEEEE--ecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 008050 403 ELLLQ--EGHSRSVYGIAFHP---DGSLAASCGLDALARVWDLRT-------GRSILALEGHVKPVLGISFSPNGYHLAT 470 (579)
Q Consensus 403 ~~~~~--~~~~~~V~~l~~sp---dg~~l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~I~si~~sp~g~~l~t 470 (579)
.+..+ ......|..+.... +..+++..+.+|.++-..+.. |.....++. ...+..+........|+.
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEE
Confidence 11100 01234455554333 467999999999999887643 222233333 334555555555567888
Q ss_pred EeCCCcEEEEECC--C---------CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe-------EEE
Q 008050 471 GGEDNTCRIWDLR--K---------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK-------LVK 532 (579)
Q Consensus 471 gs~Dg~I~iwDl~--~---------~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~-------~~~ 532 (579)
.+..|.+..+... . |.....+.. ...|..+..... +.+++..+..|.++.-.+.... -+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~-~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVRE-GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCT-TCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECC-CCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 8889998888766 2 111112222 344655555543 4577788899999988754332 122
Q ss_pred Ee--cCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 533 SL--SGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 533 ~l--~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+ ..-.+.+..+....+...|+..+.+|.+.-+...
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 22 2223456665555455567777778877777654
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.16 E-value=19 Score=37.30 Aligned_cols=224 Identities=16% Similarity=0.125 Sum_probs=112.1
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCe---eEEEEe---------CCCCCeEEEEEccC----CCEEEEEeC--
Q 008050 288 PLSGCSYSHDGN-LLATSSLSGVVKIWSMPRLQ---KFSALK---------GHTERATDVTFSPV----SNHVATSSA-- 348 (579)
Q Consensus 288 ~I~~~~~spdg~-~latgs~dg~I~iwd~~~~~---~~~~l~---------~h~~~V~~l~~sp~----~~~l~s~s~-- 348 (579)
.-..|+|.|+|. .|+++...|.|++++..... .+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 346889999996 56666778999999754221 222221 11457889999996 333333222
Q ss_pred C----------CcEEEEeCCC-----------CeeEEEe--cccCCeEEEEEecCCCEEEEEeCC---------------
Q 008050 349 D----------RTARLWNTDG-----------SLLNTFQ--GHLDRLARMAFHPSGKYLGTTSFD--------------- 390 (579)
Q Consensus 349 d----------g~I~iwd~~~-----------~~~~~~~--~h~~~I~~l~~sp~~~~l~s~s~d--------------- 390 (579)
+ ..|.-|.... +.+..+. ........|.|.|||.++++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 1344455321 1222222 122345789999999866665542
Q ss_pred --CeEEEEECCCC---------------------cEEEEEecCCCCeEEEEEcCC-----CC-EEEEEeCCC----eEEE
Q 008050 391 --KTWRLWDVDTG---------------------VELLLQEGHSRSVYGIAFHPD-----GS-LAASCGLDA----LARV 437 (579)
Q Consensus 391 --g~I~lwd~~~~---------------------~~~~~~~~~~~~V~~l~~spd-----g~-~l~sg~~dg----~I~i 437 (579)
|.|.-.|.... ..+. -.+|.. ...++|++. |. +++.+...| .-.|
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~-a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF-AHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE-EECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE-EECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 33444455431 0122 224443 457899996 34 344333212 1233
Q ss_pred EeCCCCe------EEEEEecCC-CCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCce---eEEE-e-------
Q 008050 438 WDLRTGR------SILALEGHV-KPVLGISFSP-------NGYHLATGGEDNTCRIWDLRKRKS---LYVI-P------- 492 (579)
Q Consensus 438 wd~~~~~------~~~~~~~~~-~~I~si~~sp-------~g~~l~tgs~Dg~I~iwDl~~~~~---~~~~-~------- 492 (579)
..+..+. .+..+..|. ..+..+.|.. .|.+|+ +...+.|....+..... ...+ .
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 3333222 344443221 4678888854 234444 44457776666643321 1112 1
Q ss_pred -CCCCCeEEEEEeeCCCeEEEEEE
Q 008050 493 -AHSNLISQVKFEPQEGYFLVTGS 515 (579)
Q Consensus 493 -~~~~~V~~v~~sp~~~~~l~sgs 515 (579)
.....+..+.+.|+ +.++++..
T Consensus 332 ~~~~~r~~~v~~~pd-G~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDEL-GEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTT-CCEEEEEE
T ss_pred ccccCcceEEEECCC-CCEEEEec
Confidence 11246888999997 44444443
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.61 E-value=16 Score=35.58 Aligned_cols=226 Identities=8% Similarity=0.014 Sum_probs=123.9
Q ss_pred CCCEEEEEecCCeEEEEeCCCCeeEE---------EEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC---------
Q 008050 297 DGNLLATSSLSGVVKIWSMPRLQKFS---------ALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD--------- 358 (579)
Q Consensus 297 dg~~latgs~dg~I~iwd~~~~~~~~---------~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~--------- 358 (579)
+..++++.+.+|.|+--.+....... .++ ..+.+..+......+.|+..+..|.++-+...
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678889999999877765433221 112 23345555555556777777888877666521
Q ss_pred -CCeeE---EEecccCCeEEEEEe---cCCCEEEEEeCCCeEEEEECCCC-----cEEE--EEecCCCCeEEEEEcCCCC
Q 008050 359 -GSLLN---TFQGHLDRLARMAFH---PSGKYLGTTSFDKTWRLWDVDTG-----VELL--LQEGHSRSVYGIAFHPDGS 424 (579)
Q Consensus 359 -~~~~~---~~~~h~~~I~~l~~s---p~~~~l~s~s~dg~I~lwd~~~~-----~~~~--~~~~~~~~V~~l~~spdg~ 424 (579)
|..+. .+. ....|..+... .++.+++..+.+|.++...+..- .-+. .+..+ +.+..+....+..
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 11111 112 23455555442 35668999999999999876421 1111 12222 5565655555555
Q ss_pred EEEEEeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------c
Q 008050 425 LAASCGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKR---------K 486 (579)
Q Consensus 425 ~l~sg~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~---------~ 486 (579)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+..|.++-.++... .
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 788888899888887532 11222232 2345667665555667888899999998876321 1
Q ss_pred eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 487 SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 487 ~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
....+....+.+-.+....+ ..-++..+.+|.+.-+....
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~-~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDD-CDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECT-TCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCC-CceEEEEcCCCcEEEEeccc
Confidence 12222222244444444333 23344456666666665543
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.44 E-value=16 Score=35.48 Aligned_cols=227 Identities=9% Similarity=0.008 Sum_probs=126.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe--------eE--EEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECC---C-----
Q 008050 339 VSNHVATSSADRTARLWNTDGSL--------LN--TFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVD---T----- 400 (579)
Q Consensus 339 ~~~~l~s~s~dg~I~iwd~~~~~--------~~--~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~---~----- 400 (579)
+..++++.+.+|.|+--.+..-. .. .+. ..+.+..+........|+..+..|.++-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45678888899988776643211 11 111 22344455555566778888888887766542 1
Q ss_pred -CcEEE-EE-ecCCCCeEEEEEc---CCCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCeEEEEEcCCCCE
Q 008050 401 -GVELL-LQ-EGHSRSVYGIAFH---PDGSLAASCGLDALARVWDLRT-------GRSILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 401 -~~~~~-~~-~~~~~~V~~l~~s---pdg~~l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
|..+. .+ ......|.++... .++.+++..+.+|.++-..+.. |.....+..+ ..+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 21111 00 1223346555432 3456788999999999887642 2222333333 45555555555567
Q ss_pred EEEEeCCCcEEEEECCCC---------ceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe---------
Q 008050 468 LATGGEDNTCRIWDLRKR---------KSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK--------- 529 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~~~---------~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~--------- 529 (579)
|+..+.+|.+..++...- .....+.. ...|..+....+ +..++..+..|.++-.++....
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~-~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE-GDKVVSLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEECCCS-SCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC-CCEEEEEEEecC-CCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 888888998888875421 11112222 344555554433 4567778889999888763221
Q ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 008050 530 LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRN 569 (579)
Q Consensus 530 ~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~ 569 (579)
....+....+.+..+....+...|+..+.+|.+.-+....
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 2222332335566655544455566777788777666643
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=89.00 E-value=20 Score=35.92 Aligned_cols=231 Identities=10% Similarity=0.026 Sum_probs=129.7
Q ss_pred ccCCCEEEEEeCCCcEEEEeCC--------CCeeEEEe-cccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------
Q 008050 337 SPVSNHVATSSADRTARLWNTD--------GSLLNTFQ-GHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT------- 400 (579)
Q Consensus 337 sp~~~~l~s~s~dg~I~iwd~~--------~~~~~~~~-~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~------- 400 (579)
-++..++++.+.+|.|+--.+. ++-...+. ...+.+..+........|+..+..|.++.+....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 4667889999999999976421 11122221 2345666666666677888888888877665421
Q ss_pred --CcEEEE-E-ecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 008050 401 --GVELLL-Q-EGHSRSVYGIAFHP---DGSLAASCGLDALARVWDLRT-------GRSILALEGHVKPVLGISFSPNGY 466 (579)
Q Consensus 401 --~~~~~~-~-~~~~~~V~~l~~sp---dg~~l~sg~~dg~I~iwd~~~-------~~~~~~~~~~~~~I~si~~sp~g~ 466 (579)
|..+.. + ......|.++.... ++.+|+.++..|.++...+.. |.....++. ...+..+.......
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDR 162 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCC
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCc
Confidence 211110 0 12234565554432 356899999999999887532 222233332 33455555555556
Q ss_pred EEEEEeCCCcEEEEECCCCc-------eeEEEeC-CCCCeEEEEEeeC--------------------------------
Q 008050 467 HLATGGEDNTCRIWDLRKRK-------SLYVIPA-HSNLISQVKFEPQ-------------------------------- 506 (579)
Q Consensus 467 ~l~tgs~Dg~I~iwDl~~~~-------~~~~~~~-~~~~V~~v~~sp~-------------------------------- 506 (579)
.|+..+.+|.+..|+...-. =+..+.. ....|.++...+.
T Consensus 163 ~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~ 242 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVAD 242 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------------
T ss_pred eEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccccc
Confidence 78888888988888753211 1111111 1234444444331
Q ss_pred --CCeEEEEEECCCEEEEEECCCCeE-------EE--EecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 507 --EGYFLVTGSYDMTVKVWSGRDFKL-------VK--SLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 507 --~~~~l~sgs~dg~I~iwd~~~~~~-------~~--~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
.+.++++.+..|..+...+..... +. .+....+.+..+.+..++..|+..+..|.+.-..+.
T Consensus 243 ~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 243 NGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ----CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 245788889999999887653221 22 222234456665554455566666677766655543
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.86 E-value=21 Score=35.93 Aligned_cols=165 Identities=11% Similarity=0.097 Sum_probs=98.2
Q ss_pred eEEEEECCCC--cEEEEEecC------CCCeEEEEEc---CC----CCEEEEEe-CCCeEEEEeCCCCeEEEEEecC---
Q 008050 392 TWRLWDVDTG--VELLLQEGH------SRSVYGIAFH---PD----GSLAASCG-LDALARVWDLRTGRSILALEGH--- 452 (579)
Q Consensus 392 ~I~lwd~~~~--~~~~~~~~~------~~~V~~l~~s---pd----g~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~--- 452 (579)
.|.+||+.++ +.+..+.-. .+.+..+.+. ++ +.++..+. ..+.|.|||+.+++....+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778899988 777665421 3457788877 22 33444444 4678999999998766554210
Q ss_pred ---------------CCCeEEEEEcCC----CCEEEEEeCCC-cEEEEE---CCCC---ceeEEEeCC--CCCeEEEEEe
Q 008050 453 ---------------VKPVLGISFSPN----GYHLATGGEDN-TCRIWD---LRKR---KSLYVIPAH--SNLISQVKFE 504 (579)
Q Consensus 453 ---------------~~~I~si~~sp~----g~~l~tgs~Dg-~I~iwD---l~~~---~~~~~~~~~--~~~V~~v~~s 504 (579)
...|..|+++|+ ++.|+.+...+ .++-.. |++. ..+..+-.. ...-..++++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 135888999997 77777776554 233222 2222 122222111 1233345665
Q ss_pred eCCCeEEEEEECCCEEEEEECCC-C------eEEEEecCCCCcEEEEEEcCCCCEEEEEE
Q 008050 505 PQEGYFLVTGSYDMTVKVWSGRD-F------KLVKSLSGHEAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 505 p~~~~~l~sgs~dg~I~iwd~~~-~------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 557 (579)
+..|.++++--..+.|..|+..+ . ..+..-. .-..+.++.+..+|.+.++.+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEEC
Confidence 44577788777889999999875 1 2222212 333578888877776555443
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=87.35 E-value=41 Score=37.47 Aligned_cols=146 Identities=12% Similarity=0.170 Sum_probs=76.6
Q ss_pred CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCeeEEEEeCC-------CCCeEEEEEccCC-CEEEEEeCCCc----
Q 008050 285 DDRPLSGCSYSHD-GNLLATSSLSGVVKIWSMPRLQKFSALKGH-------TERATDVTFSPVS-NHVATSSADRT---- 351 (579)
Q Consensus 285 h~~~I~~~~~spd-g~~latgs~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp~~-~~l~s~s~dg~---- 351 (579)
....|.+++++|. ...+++++..|.|...+ +.++.-..+..+ ...|.+|+++|.. +.++.+..+..
T Consensus 13 ~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 13 GGGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 3568999999986 45666777667665544 344444444332 2469999999843 44555443311
Q ss_pred EEEEe-CC-CCeeEEEecc-------c--CCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCcEEEEEec------CCCC
Q 008050 352 ARLWN-TD-GSLLNTFQGH-------L--DRLARMAFHPSG-KYLGTTSFDKTWRLWDVDTGVELLLQEG------HSRS 413 (579)
Q Consensus 352 I~iwd-~~-~~~~~~~~~h-------~--~~I~~l~~sp~~-~~l~s~s~dg~I~lwd~~~~~~~~~~~~------~~~~ 413 (579)
-.||. .+ ++.-..+... . ..+..++++|.. ..++.+...+.|. .....|+.-..... ....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCC
Confidence 33443 33 3332222210 1 135578888753 4555555344332 22233332222221 1245
Q ss_pred eEEEEEcCC-CCEEEEEeCC
Q 008050 414 VYGIAFHPD-GSLAASCGLD 432 (579)
Q Consensus 414 V~~l~~spd-g~~l~sg~~d 432 (579)
+..+.++|. +..++++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999884 4455555544
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.19 E-value=36 Score=34.05 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=126.5
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CeeE---EEec-ccCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 008050 331 ATDVTFSPVSNHVATSSADRTARLWNTDG---------SLLN---TFQG-HLDRLARMAFHPSGKYLGTTSFDKTWRLWD 397 (579)
Q Consensus 331 V~~l~~sp~~~~l~s~s~dg~I~iwd~~~---------~~~~---~~~~-h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd 397 (579)
|..|+- ...+.+.-..||.|+.|-.+. .... .+.. ....+..++++.-..+.+....||.|+.|-
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 444443 345666667889999996321 1111 1111 122345566766667778888899999996
Q ss_pred CCCC-----------cEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------eE--E-EEEe-cCC
Q 008050 398 VDTG-----------VELLLQEG-HSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG--------RS--I-LALE-GHV 453 (579)
Q Consensus 398 ~~~~-----------~~~~~~~~-~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~--------~~--~-~~~~-~~~ 453 (579)
.... ........ ....|..++... ...+.-..+|.|+.|-.... .. . ..+. ...
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 5321 01111111 122566665543 34555667899999964321 00 1 1111 123
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEE
Q 008050 454 KPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-----------SLYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVK 521 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-----------~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~ 521 (579)
..|..++......+.++-..||.|+.|-....- ....+.. ....|..++.- ..+.+.-..+|.|+
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G---~~hs~alt~~G~v~ 287 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG---SQFSVALTKSGAVY 287 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE---TTEEEEEETTSCEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC---CCEEEEEeCCCeEE
Confidence 357777765534566677789999999654211 1111111 12235555554 33444457899999
Q ss_pred EEECCCC----------e-EEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 522 VWSGRDF----------K-LVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 522 iwd~~~~----------~-~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
.|-.... . ....+.. ....|..++.. ....+....||.|+.|-.+..++.
T Consensus 288 ~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~~GqL 349 (389)
T 3kci_A 288 TWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDNDEGQL 349 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTT
T ss_pred EEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCCCCcC
Confidence 9975321 1 1111221 22357777654 334555678999999998765443
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.66 E-value=35 Score=38.89 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 540 ~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
.+.++...++..++++-+.|+++|+|++.++++..+.|+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467777888888999999999999999999988877664
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.71 E-value=37 Score=32.36 Aligned_cols=194 Identities=10% Similarity=-0.003 Sum_probs=111.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeC---C-CCeeEEEecccCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCC
Q 008050 328 TERATDVTFSPVSNHVATSSADRTARLWNT---D-GSLLNTFQGHLDRLARMAFHP--SGKYLGTTSFDKTWRLWDVDTG 401 (579)
Q Consensus 328 ~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~---~-~~~~~~~~~h~~~I~~l~~sp--~~~~l~s~s~dg~I~lwd~~~~ 401 (579)
.+.+.++......++|+.-+.+|.++--.. . ..... +-.....|..+.. . +..+++..+.+|.++...+..-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345655555555666777777887765431 1 11100 2223455666644 4 4679999999999999987543
Q ss_pred c----EEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcCCCCE
Q 008050 402 V----ELLLQ-EGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSPNGYH 467 (579)
Q Consensus 402 ~----~~~~~-~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp~g~~ 467 (579)
. -.... ......+..+........++..+..|.+..++... |.....+.. ...|.++....++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 2 11111 11234566666665666788888999988886532 222222332 244666655556678
Q ss_pred EEEEeCCCcEEEEECCC-------CceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEE--EECC
Q 008050 468 LATGGEDNTCRIWDLRK-------RKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKV--WSGR 526 (579)
Q Consensus 468 l~tgs~Dg~I~iwDl~~-------~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~i--wd~~ 526 (579)
++..+..|.++...+.. ++-+..+ ...+.+..+.... +...++..+.+|.+.. ++..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 88899999999887642 2222333 2233444443332 2445566677777776 7654
No 373
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=80.00 E-value=47 Score=32.47 Aligned_cols=186 Identities=10% Similarity=0.044 Sum_probs=107.9
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCe----eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC----------CCe
Q 008050 296 HDGNLLATSSLSGVVKIWSMPRLQ----KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD----------GSL 361 (579)
Q Consensus 296 pdg~~latgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~----------~~~ 361 (579)
++..++++.+.+|.|+--.+.... .-..++ ..+.+..+......+.|+..+..|.++-+... |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456778889999999876543211 001122 23455555555566778888888887666521 111
Q ss_pred eE---EEecccCCeEEEEEecC---CCEEEEEeCCCeEEEEECCC------CcEEEEEe-cCCCCeEEEEEcCCCCEEEE
Q 008050 362 LN---TFQGHLDRLARMAFHPS---GKYLGTTSFDKTWRLWDVDT------GVELLLQE-GHSRSVYGIAFHPDGSLAAS 428 (579)
Q Consensus 362 ~~---~~~~h~~~I~~l~~sp~---~~~l~s~s~dg~I~lwd~~~------~~~~~~~~-~~~~~V~~l~~spdg~~l~s 428 (579)
+. .+. ....|..+....+ +.+++.++.+|.++...+.. +.-+..+. ...+.+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 2234555443332 56899999999999988742 11121111 12355666555555567888
Q ss_pred EeCCCeEEEEeCCC---------CeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 008050 429 CGLDALARVWDLRT---------GRSILALEGHVKPVLGISFSPNGY-HLATGGEDNTCRIWDLRK 484 (579)
Q Consensus 429 g~~dg~I~iwd~~~---------~~~~~~~~~~~~~I~si~~sp~g~-~l~tgs~Dg~I~iwDl~~ 484 (579)
.+.+|.+..++... |.....+. ....|.++....++. .|++.+..|..+..++..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 88999988887532 11222222 233466665544444 788888899888877643
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.18 E-value=54 Score=32.72 Aligned_cols=222 Identities=11% Similarity=0.074 Sum_probs=117.1
Q ss_pred CEEEEEecCCeEEEEeCCCC--------e---eEEEEeC-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-------
Q 008050 299 NLLATSSLSGVVKIWSMPRL--------Q---KFSALKG-HTERATDVTFSPVSNHVATSSADRTARLWNTDG------- 359 (579)
Q Consensus 299 ~~latgs~dg~I~iwd~~~~--------~---~~~~l~~-h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~------- 359 (579)
...+.-..||.|+.|-.... . ....+.. ....+..++.+....+.+.-..||.|+.|-.+.
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 44444556777777754321 1 1111221 223455566766667777788899999996321
Q ss_pred --Cee---EEEecc-cCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---------cE--EEEE-ecCCCCeEEEEEcC
Q 008050 360 --SLL---NTFQGH-LDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG---------VE--LLLQ-EGHSRSVYGIAFHP 421 (579)
Q Consensus 360 --~~~---~~~~~h-~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~---------~~--~~~~-~~~~~~V~~l~~sp 421 (579)
... ..+... ...|..++.. ..+.+....+|.|+.|-.... .. .... ......|..++...
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 011 111111 1245555443 556667778999999975331 01 1111 11233566666654
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC----------eEE-EEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---
Q 008050 422 DGSLAASCGLDALARVWDLRTG----------RSI-LALEG-HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK--- 486 (579)
Q Consensus 422 dg~~l~sg~~dg~I~iwd~~~~----------~~~-~~~~~-~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~--- 486 (579)
.....+.-..+|.|..|-.... ... ..+.. ....|..|+...+ +.++-..||.|+.|-....-
T Consensus 221 g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTC
T ss_pred CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCC
Confidence 3345666678999999964321 011 11111 1224666666433 45555789999999754211
Q ss_pred --------eeEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 487 --------SLYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 487 --------~~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
....+.. ....|..++.- ....+.-..||.|+.|-...
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~G---~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIATG---SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTCCEEEEECCT
T ss_pred CCCCccccCCeEeccCCCCCEEEEEec---cCeEEEECCCCCEEEeeCCC
Confidence 0111111 22345555543 34455557899999997543
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=78.65 E-value=87 Score=34.75 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=79.6
Q ss_pred CCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCeeEEEecc-------cCCeEEEEEecCC-CEEEEEeCCC-----eE
Q 008050 328 TERATDVTFSPV-SNHVATSSADRTARLWNTDGSLLNTFQGH-------LDRLARMAFHPSG-KYLGTTSFDK-----TW 393 (579)
Q Consensus 328 ~~~V~~l~~sp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~h-------~~~I~~l~~sp~~-~~l~s~s~dg-----~I 393 (579)
.+.|.+|.++|. ...++.++..+.|...+-.++.-..+..+ ...|.+++++|.. ..++++.... ..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 458999999986 35667777777777766555544444332 2468999999853 3444443221 22
Q ss_pred EEEECCCCcEEEEEecC-------C--CCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEec------CCCCeE
Q 008050 394 RLWDVDTGVELLLQEGH-------S--RSVYGIAFHPD-GSLAASCGLDALARVWDLRTGRSILALEG------HVKPVL 457 (579)
Q Consensus 394 ~lwd~~~~~~~~~~~~~-------~--~~V~~l~~spd-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~------~~~~I~ 457 (579)
.+.....|+.-...... . ..+..++++|. ...++.+...+.|. .....|+.-..+.. ....+.
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~~ 172 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGYT 172 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCeE
Confidence 23334444443333210 0 13456888874 34555565344332 22233443333321 124578
Q ss_pred EEEEcC-CCCEEEEEeCC
Q 008050 458 GISFSP-NGYHLATGGED 474 (579)
Q Consensus 458 si~~sp-~g~~l~tgs~D 474 (579)
.|.++| ++..++++..+
T Consensus 173 ~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 173 SVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEECTTSTTCEEEEESS
T ss_pred EEEECCCCCCEEEEEEcC
Confidence 899988 44566666654
No 376
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.94 E-value=92 Score=34.13 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=117.7
Q ss_pred EEEE-EccCCCEEEEE-eCC----CcEEEEeCCCCeeE--EEe-cccC------CeEEEEEecCCCEEEEEe--------
Q 008050 332 TDVT-FSPVSNHVATS-SAD----RTARLWNTDGSLLN--TFQ-GHLD------RLARMAFHPSGKYLGTTS-------- 388 (579)
Q Consensus 332 ~~l~-~sp~~~~l~s~-s~d----g~I~iwd~~~~~~~--~~~-~h~~------~I~~l~~sp~~~~l~s~s-------- 388 (579)
..+. ++|++++++.+ |.. ..++++|+..+... .+. ..+. ....++|..++..+++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 3444 78888876654 322 37899997665332 111 0000 113447763443433321
Q ss_pred --CCCeEEEEECCCCc--EEEEEecCCCC-eEEEEEcCCCC-----EEEEEeC---CCeEEEEeCCC--CeEEEEEecCC
Q 008050 389 --FDKTWRLWDVDTGV--ELLLQEGHSRS-VYGIAFHPDGS-----LAASCGL---DALARVWDLRT--GRSILALEGHV 453 (579)
Q Consensus 389 --~dg~I~lwd~~~~~--~~~~~~~~~~~-V~~l~~spdg~-----~l~sg~~---dg~I~iwd~~~--~~~~~~~~~~~ 453 (579)
....|+.|.+-+.. -..++.+.... ..+...+.++. .+++.+. ...+.+.|... ++ +..+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 12578899887642 23344433333 33455566665 2444332 24556666553 33 22232222
Q ss_pred CCeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCc-------eeEE-EeC-CCCCeEEEEEeeCCCeEEEEE
Q 008050 454 KPVLGISFSPNGYHLATG----------GEDNTCRIWDLRKRK-------SLYV-IPA-HSNLISQVKFEPQEGYFLVTG 514 (579)
Q Consensus 454 ~~I~si~~sp~g~~l~tg----------s~Dg~I~iwDl~~~~-------~~~~-~~~-~~~~V~~v~~sp~~~~~l~sg 514 (579)
.. .+..+.++.+++.. ...+.|.++|+.++. .... +.. ....+..+.|.. +.++++.
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~~ 366 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK--DRVFLAT 366 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS--SCEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC--CEEEEEE
Confidence 21 12233355444422 246779999987631 2223 322 234566777775 4677777
Q ss_pred ECCCE--EEEEECCCCe-EEEE-ecCC-CCcEEEEEEcCCCCE-EEEEEc---CCeEEEEEcC
Q 008050 515 SYDMT--VKVWSGRDFK-LVKS-LSGH-EAKVTSLDIHPDEQS-IATVSH---DRWIKLWSTR 568 (579)
Q Consensus 515 s~dg~--I~iwd~~~~~-~~~~-l~~h-~~~V~~l~~s~dg~~-L~s~s~---Dg~I~iW~~~ 568 (579)
..++. |.++++.+++ .+.. +... .+.+....+++++.. +++.+. -+.+..+++.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 77765 6666665564 1222 2211 245666666676654 444432 2567777765
No 377
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=75.35 E-value=72 Score=32.13 Aligned_cols=232 Identities=12% Similarity=0.027 Sum_probs=123.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCC--C-----------eeEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 008050 330 RATDVTFSPVSNHVATSSADRTARLWNTDG--S-----------LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLW 396 (579)
Q Consensus 330 ~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~-----------~~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lw 396 (579)
.|..|+.. +.+.+.-..||.|+.|-.+. . ..-........|..++.. ..+.+....||.|+.|
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEE
Confidence 46555543 46677778899999996321 1 011111122345555543 4566666789999999
Q ss_pred EC--CC-CcE---------EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------------
Q 008050 397 DV--DT-GVE---------LLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG--------------------- 443 (579)
Q Consensus 397 d~--~~-~~~---------~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~--------------------- 443 (579)
-. .. ++. ..........|..|+...+ ..+.-..+|.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~--hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD--HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS--EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC--eEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 75 22 211 1111122345666665433 4555567899999953321
Q ss_pred --eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEEeCCCCCeEEEEEeeCCCeE
Q 008050 444 --RSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK-----------SLYVIPAHSNLISQVKFEPQEGYF 510 (579)
Q Consensus 444 --~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~-----------~~~~~~~~~~~V~~v~~sp~~~~~ 510 (579)
.+..........|..|+.... ..++.-..+|.|+.|-..... ...........|..|+.- ..+
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G---~~h 305 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG---QHH 305 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC---SSE
T ss_pred ccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc---cCe
Confidence 111111112234666655432 223333578899999644311 111111113445555543 445
Q ss_pred EEEEECCCEEEEEECCCC------------eEEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 511 LVTGSYDMTVKVWSGRDF------------KLVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 511 l~sgs~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
.+.-..||.|+.|-.... .....+......|..++... .+.+....||.|+.|-.+..++.
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCTTSCS
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCCCCCC
Confidence 555678999999964321 12223333333688887663 34444578999999988765443
No 378
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.55 E-value=1.7e+02 Score=33.19 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 008050 455 PVLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIP 492 (579)
Q Consensus 455 ~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~ 492 (579)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999999988765
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.51 E-value=1.2e+02 Score=32.19 Aligned_cols=61 Identities=30% Similarity=0.242 Sum_probs=44.6
Q ss_pred CCeEEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEe
Q 008050 412 RSVYGIAFHPDGSLAASCGL------------DALARVWDLRTGRSILALEGH-VKPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 412 ~~V~~l~~spdg~~l~sg~~------------dg~I~iwd~~~~~~~~~~~~~-~~~I~si~~sp~g~~l~tgs 472 (579)
.....|.|.++|.+.++... ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34668999999987774432 226777788788776666543 34689999999999888775
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.22 E-value=24 Score=41.21 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 541 VTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 541 V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
+.+++...+..+|++-+.|+++|||++.++.+..+.|+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 45556677888999999999999999999988877664
No 381
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=59.83 E-value=1e+02 Score=28.85 Aligned_cols=139 Identities=10% Similarity=-0.018 Sum_probs=77.2
Q ss_pred EEEEEecCCeEEEEeCCCCee-EEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC--------CCee---EEEec
Q 008050 300 LLATSSLSGVVKIWSMPRLQK-FSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTD--------GSLL---NTFQG 367 (579)
Q Consensus 300 ~latgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~--------~~~~---~~~~~ 367 (579)
.+++.+.+|.|+--....... ...++ ..+.+..+......+.|+..+..|.++-+... |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 455667777776555432110 00122 22344444444455567777888887766521 1111 0111
Q ss_pred ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------CcEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEe
Q 008050 368 HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-------GVELLLQEGHSRSVYGIAFH-PDGSLAASCGLDALARVWD 439 (579)
Q Consensus 368 h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-------~~~~~~~~~~~~~V~~l~~s-pdg~~l~sg~~dg~I~iwd 439 (579)
....|..+....++.+|+.++..|.++...+.. +.....+. ....+..+... .++..++..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~-~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC-TTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEEC-CCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566664434567888999999999988742 22222222 22445554454 3455788888899888887
Q ss_pred CC
Q 008050 440 LR 441 (579)
Q Consensus 440 ~~ 441 (579)
+.
T Consensus 161 ~~ 162 (256)
T 1zvt_A 161 VS 162 (256)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=58.84 E-value=2.1e+02 Score=31.26 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=38.3
Q ss_pred CeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCeeEEEecc-------cCCeEEEEEecCC-CEEEEEe
Q 008050 330 RATDVTFSPVS-NHVATSSADRTARLWNTDGSLLNTFQGH-------LDRLARMAFHPSG-KYLGTTS 388 (579)
Q Consensus 330 ~V~~l~~sp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~h-------~~~I~~l~~sp~~-~~l~s~s 388 (579)
.|..|+++|.. ..++.+...|.|..++-.++.-..+..+ ...|.+++++|.. +.++++.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 79999999864 5566677667777776555554444332 2458899999843 4444443
No 383
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=54.28 E-value=2.5e+02 Score=30.68 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=55.2
Q ss_pred CeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCeeEEEEeCC-------CCCeEEEEEccC-CCEEEEEeCC-------Cc
Q 008050 288 PLSGCSYSHDG-NLLATSSLSGVVKIWSMPRLQKFSALKGH-------TERATDVTFSPV-SNHVATSSAD-------RT 351 (579)
Q Consensus 288 ~I~~~~~spdg-~~latgs~dg~I~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp~-~~~l~s~s~d-------g~ 351 (579)
.|..++++|.. +.++++...|.|..++ +.++.-..+..+ ...|.+|+++|. .+.++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 89999999874 5666677666665554 334443333332 245999999984 3444444321 12
Q ss_pred EEEEe-CCC-CeeEEEec-cc--------CCeEEEEEecCC-CEEEEEeC
Q 008050 352 ARLWN-TDG-SLLNTFQG-HL--------DRLARMAFHPSG-KYLGTTSF 389 (579)
Q Consensus 352 I~iwd-~~~-~~~~~~~~-h~--------~~I~~l~~sp~~-~~l~s~s~ 389 (579)
..||. .++ +.-..+.. .. ..+..+.++|.. ..++.+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 45555 333 22222211 10 124678998854 45666653
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.64 E-value=53 Score=35.10 Aligned_cols=59 Identities=31% Similarity=0.286 Sum_probs=43.6
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEe
Q 008050 414 VYGIAFHPDGSLAASCGLD------------ALARVWDLRTGRSILALEGHV-KPVLGISFSPNGYHLATGG 472 (579)
Q Consensus 414 V~~l~~spdg~~l~sg~~d------------g~I~iwd~~~~~~~~~~~~~~-~~I~si~~sp~g~~l~tgs 472 (579)
.-.|+|++.|.++++-..+ ..+.+.+..+++....+.++. ..++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4578999999877765432 346677777787766666543 5699999999999888764
No 385
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=51.18 E-value=2.4e+02 Score=29.74 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=88.0
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEeCCC----eEEEEeCCCCeEEEEEecC--CCCeEEEEEcCC--CCEEEEEeCCCcEE
Q 008050 409 GHSRSVYGIAFHPD--GSLAASCGLDA----LARVWDLRTGRSILALEGH--VKPVLGISFSPN--GYHLATGGEDNTCR 478 (579)
Q Consensus 409 ~~~~~V~~l~~spd--g~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~--~~~I~si~~sp~--g~~l~tgs~Dg~I~ 478 (579)
+|...+....|.|+ |..++.+..++ -..+.|.++|+.+...... .+......|.|+ |..+.+ ++ .
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~ 435 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--S 435 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--E
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--c
Confidence 78888888889887 44666666542 3456899999999877543 344455556665 333333 22 4
Q ss_pred EEECCCCceeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCCe--EEEEecC-------CCCcEEEEEEcCC
Q 008050 479 IWDLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFK--LVKSLSG-------HEAKVTSLDIHPD 549 (579)
Q Consensus 479 iwDl~~~~~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~~--~~~~l~~-------h~~~V~~l~~s~d 549 (579)
+|+. +++.+.... ....-..+-|.-+....|+- .+.|.-|+..+++ .+.++.+ ...+..+..+--|
T Consensus 436 l~~~-~G~~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GD 510 (591)
T 2zux_A 436 LYSA-KGVKIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGD 510 (591)
T ss_dssp EECT-TSCBCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSS
T ss_pred eECC-CCCEecCCC-CCCcceeEEECCCCcHhhhC---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEecccc
Confidence 6775 444443221 11222346666554444543 3478889977776 4444432 2233444455444
Q ss_pred CC-EEEEEE-cCCeEEEEEcCCCCc
Q 008050 550 EQ-SIATVS-HDRWIKLWSTRNKGD 572 (579)
Q Consensus 550 g~-~L~s~s-~Dg~I~iW~~~~~~~ 572 (579)
.+ -|+..+ .+..|+||.......
T Consensus 511 wREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 511 WREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp SSCEEEEEETTSSEEEEECCCCCCS
T ss_pred CeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 33 244444 455799998765443
No 386
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=49.12 E-value=2.1e+02 Score=28.44 Aligned_cols=263 Identities=13% Similarity=0.092 Sum_probs=134.1
Q ss_pred CCEEEEEecCCeEEEEeCCCC-----------eeEEEEeC-CCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCCC-----
Q 008050 298 GNLLATSSLSGVVKIWSMPRL-----------QKFSALKG-HTERATDVTFSPVSNHVATSSAD-RTARLWNTDG----- 359 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~-----------~~~~~l~~-h~~~V~~l~~sp~~~~l~s~s~d-g~I~iwd~~~----- 359 (579)
+...+.-..+|.|+.|=.... .....+.. ....|..|+... .+.+.-..+ +.|+.|-.+.
T Consensus 25 ~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~--~ht~al~~~gg~v~~wG~n~~GqLG 102 (406)
T 4d9s_A 25 ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA--DHTVAYSQSGMEVYSWGWGDFGRLG 102 (406)
T ss_dssp SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTTTEEEEEECCGGGTTC
T ss_pred CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCc--ceEEEEECCCCEEEEEcCCCCcCCC
Confidence 344455566888888864321 11112211 223566666543 344434445 5899995221
Q ss_pred ----CeeE---EEec-ccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-c--------E-E-EEEec-CCCCeEEEEE
Q 008050 360 ----SLLN---TFQG-HLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-V--------E-L-LLQEG-HSRSVYGIAF 419 (579)
Q Consensus 360 ----~~~~---~~~~-h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-~--------~-~-~~~~~-~~~~V~~l~~ 419 (579)
.... .+.. ....|..++.. ..+.+....+|.|+.|-.... + . . ..... ....|..++.
T Consensus 103 ~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~ 180 (406)
T 4d9s_A 103 HGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 180 (406)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE
T ss_pred CCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec
Confidence 0111 1111 12245555543 456667778999999975431 1 1 1 11111 1235666655
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCC----------eEE-EEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 008050 420 HPDGSLAASCGLDALARVWDLRTG----------RSI-LALE-GHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS 487 (579)
Q Consensus 420 spdg~~l~sg~~dg~I~iwd~~~~----------~~~-~~~~-~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~ 487 (579)
.. ...+.-..+|.|+.|-.... ... ..+. .....|..|+... .+.+.-..+|.|+.|-....-.
T Consensus 181 G~--~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l~~~G~v~~wG~n~~Gq 256 (406)
T 4d9s_A 181 GA--EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISVSYSGALYTYGWSKYGQ 256 (406)
T ss_dssp CS--SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEEETTCCEEEEECCTTST
T ss_pred CC--CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEEcCCCCEEEeeCCCCCC
Confidence 43 34555567899999964321 111 1111 1123466666543 3555567899999997543211
Q ss_pred -----------eEEEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC------------eEEEEecCCCCcEEE
Q 008050 488 -----------LYVIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF------------KLVKSLSGHEAKVTS 543 (579)
Q Consensus 488 -----------~~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~ 543 (579)
...+.. ....|..++.- ..+.+.-..||.|+.|-.... .+..........|..
T Consensus 257 lG~g~~~~~~~p~~v~~~~~~~v~~i~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 333 (406)
T 4d9s_A 257 LGHGDLEDHLIPHKLEALSNSFISQISGG---WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ 333 (406)
T ss_dssp TCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEE
T ss_pred CCCCCCcCccccEEecccCCCCEEEEEec---CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEE
Confidence 111111 22335555443 344555578999999964431 111111112235777
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCCCcc
Q 008050 544 LDIHPDEQSIATVSHDRWIKLWSTRNKGDE 573 (579)
Q Consensus 544 l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~ 573 (579)
++.. ..+.+....||.|+.|-.+..++.
T Consensus 334 va~G--~~hs~alt~~G~v~~wG~n~~GqL 361 (406)
T 4d9s_A 334 VSCG--WRHTLAVTERNNVFAWGRGTNGQL 361 (406)
T ss_dssp EEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred EEeC--CCeEEEEeCCCCEEEecCCCCCcc
Confidence 7654 344555668999999998765443
No 387
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.32 E-value=56 Score=38.05 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEEEEEe
Q 008050 413 SVYGIAFHPDGSLAASCGLDALARVWDLRTGRSILALE 450 (579)
Q Consensus 413 ~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 450 (579)
.+.+++...+..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999999988764
No 388
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=44.11 E-value=2.5e+02 Score=27.90 Aligned_cols=219 Identities=11% Similarity=-0.012 Sum_probs=113.0
Q ss_pred CCEEEEEecCCeEEEEeCCCCe-------------eEEEEeCCCCCeEEEEEccCCCEEEEEeCCCcEEEEeC--CC-Ce
Q 008050 298 GNLLATSSLSGVVKIWSMPRLQ-------------KFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNT--DG-SL 361 (579)
Q Consensus 298 g~~latgs~dg~I~iwd~~~~~-------------~~~~l~~h~~~V~~l~~sp~~~~l~s~s~dg~I~iwd~--~~-~~ 361 (579)
+...+.-..||.|+.|-..... ....+. ....|..|+.. ..+.+.-..||.|+.|-. +. ..
T Consensus 84 ~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~Gq 160 (423)
T 3mvd_K 84 GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVFAWGSFRDSHGN 160 (423)
T ss_dssp SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEEEEECEECSSSE
T ss_pred CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCC
Confidence 4555666778999999653311 111111 22356666543 355566678899999974 21 11
Q ss_pred e----------EEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-----------------------cEEEEEe
Q 008050 362 L----------NTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTG-----------------------VELLLQE 408 (579)
Q Consensus 362 ~----------~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~-----------------------~~~~~~~ 408 (579)
+ .........|..++.. ..+.+....+|.|+.|-.... .......
T Consensus 161 lG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~ 238 (423)
T 3mvd_K 161 MGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 238 (423)
T ss_dssp EESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC
T ss_pred cCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee
Confidence 1 0111122345555543 456666778999999964321 1111111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008050 409 GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-----------RSILALEGHVKPVLGISFSPNGYHLATGGEDNTC 477 (579)
Q Consensus 409 ~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-----------~~~~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I 477 (579)
.....|..++.... ..++.-..+|.|..|-.... ....-.......|..|+... .+.+.-..||.|
T Consensus 239 ~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~alt~~G~v 315 (423)
T 3mvd_K 239 TRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVILTTDLKC 315 (423)
T ss_dssp TTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEEEETTCCE
T ss_pred cCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEEEeCCCcE
Confidence 22234555554422 22333357888888854321 11111111234577766643 355566789999
Q ss_pred EEEECCCC---------c---eeEEEeCCCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCC
Q 008050 478 RIWDLRKR---------K---SLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRD 527 (579)
Q Consensus 478 ~iwDl~~~---------~---~~~~~~~~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~ 527 (579)
+.|-.... . ....+..-...|..|+.- ..+.+.-..||.|+.|-...
T Consensus 316 ~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G---~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 316 SVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG---EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE---TTEEEEEETTSCEEEEECCT
T ss_pred EEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC---CCeEEEEcCCCCEEEECCCC
Confidence 99965321 0 111222222356666654 23334447899999997543
No 389
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.50 E-value=2.6e+02 Score=27.84 Aligned_cols=186 Identities=5% Similarity=-0.034 Sum_probs=105.5
Q ss_pred CCCeeEEEEcCCCCEEEEEec---------------CCeEEEEeCCCC--eeEEEEeCC------CCCeEEEEEc---cC
Q 008050 286 DRPLSGCSYSHDGNLLATSSL---------------SGVVKIWSMPRL--QKFSALKGH------TERATDVTFS---PV 339 (579)
Q Consensus 286 ~~~I~~~~~spdg~~latgs~---------------dg~I~iwd~~~~--~~~~~l~~h------~~~V~~l~~s---p~ 339 (579)
--.|..+...+++++-+.=+. .-.|.+||+.+. +.++++.-. ...+..+.+. +.
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346777778877665443211 126889999999 888877532 3457888887 22
Q ss_pred ----CCEEEEEe-CCCcEEEEeCCCCeeEEEec---------------c----cCCeEEEEEecC----CCEEEEEeCCC
Q 008050 340 ----SNHVATSS-ADRTARLWNTDGSLLNTFQG---------------H----LDRLARMAFHPS----GKYLGTTSFDK 391 (579)
Q Consensus 340 ----~~~l~s~s-~dg~I~iwd~~~~~~~~~~~---------------h----~~~I~~l~~sp~----~~~l~s~s~dg 391 (579)
+.+...+. ..+.|.++|+.......+.. . ...+..++++|+ ++.|+.....+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 33444443 46789999966543333221 0 135777888887 66666655444
Q ss_pred -eEEEEE---CCCC---cEEEEE--ecCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEeCCC-C---eEEEEE--ecCCCC
Q 008050 392 -TWRLWD---VDTG---VELLLQ--EGHSRSVYGIAFH-PDGSLAASCGLDALARVWDLRT-G---RSILAL--EGHVKP 455 (579)
Q Consensus 392 -~I~lwd---~~~~---~~~~~~--~~~~~~V~~l~~s-pdg~~l~sg~~dg~I~iwd~~~-~---~~~~~~--~~~~~~ 455 (579)
.++-.. ++.. ..+... .+.......+++. .+|.++++--..+.|..|+..+ . .....+ ...-..
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~ 325 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF 325 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence 233222 1111 111111 1112344456775 6787888888889999999875 1 112222 222234
Q ss_pred eEEEEEcCCCCEEEEE
Q 008050 456 VLGISFSPNGYHLATG 471 (579)
Q Consensus 456 I~si~~sp~g~~l~tg 471 (579)
...+.+..+|.+.+..
T Consensus 326 pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 326 GTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cCeEEECCCCeEEEEE
Confidence 6777777666544444
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.87 E-value=88 Score=33.41 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=40.6
Q ss_pred eEEEEcCCCCEEEEEecC------------CeEEEEeCCCCeeEEEEeCC-CCCeEEEEEccCCCEEEEE
Q 008050 290 SGCSYSHDGNLLATSSLS------------GVVKIWSMPRLQKFSALKGH-TERATDVTFSPVSNHVATS 346 (579)
Q Consensus 290 ~~~~~spdg~~latgs~d------------g~I~iwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~s~ 346 (579)
--|+|++.|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+|+++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 458899999966654322 24556666677776666654 4579999999999888765
No 391
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.62 E-value=26 Score=38.27 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCccccccC
Q 008050 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDV 578 (579)
Q Consensus 540 ~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~~~~~~~ 578 (579)
.|.++.+ +..+|++-+.|.++|+|++.++.+....++
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 367999999999999999999987776654
No 392
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=36.96 E-value=4e+02 Score=28.13 Aligned_cols=193 Identities=16% Similarity=0.209 Sum_probs=98.9
Q ss_pred cEEEEeCCCCeeEEEec--------ccCCeEEEEEecCCC-EEEEEeCCCe----------------------------E
Q 008050 351 TARLWNTDGSLLNTFQG--------HLDRLARMAFHPSGK-YLGTTSFDKT----------------------------W 393 (579)
Q Consensus 351 ~I~iwd~~~~~~~~~~~--------h~~~I~~l~~sp~~~-~l~s~s~dg~----------------------------I 393 (579)
.|.+|+++++.+..+.. |...+....|.-||+ -+++.+.+|+ +
T Consensus 152 ~l~aY~ldG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL 231 (591)
T 2zux_A 152 LIDAYKLDGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYL 231 (591)
T ss_dssp EEEEECTTSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEE
T ss_pred EEEEEECCCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEE
Confidence 46666666665554432 344566666776775 5666655554 7
Q ss_pred EEEECCCCcEEEEEecC--CCC---------------eEEEEEcC-CCCEEEEEe---CCCeEEEEeCCCCeEEEEE--e
Q 008050 394 RLWDVDTGVELLLQEGH--SRS---------------VYGIAFHP-DGSLAASCG---LDALARVWDLRTGRSILAL--E 450 (579)
Q Consensus 394 ~lwd~~~~~~~~~~~~~--~~~---------------V~~l~~sp-dg~~l~sg~---~dg~I~iwd~~~~~~~~~~--~ 450 (579)
.++|=.+|+.+....-. .+. ..++++.. +...++.+- ....|..||.+.++....+ .
T Consensus 232 ~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d 311 (591)
T 2zux_A 232 TVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLD 311 (591)
T ss_dssp EEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEE
T ss_pred EEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEec
Confidence 78887777776654321 111 12333321 111222221 2235888998888754433 2
Q ss_pred cCC-----------CCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEe-CCCCCeEEEEEeeCC-CeEEEEEEC
Q 008050 451 GHV-----------KPVLGISFSPNGY-HLATGGEDNTCRIWDLRKRKSLYVIP-AHSNLISQVKFEPQE-GYFLVTGSY 516 (579)
Q Consensus 451 ~~~-----------~~I~si~~sp~g~-~l~tgs~Dg~I~iwDl~~~~~~~~~~-~~~~~V~~v~~sp~~-~~~l~sgs~ 516 (579)
... ..+.-..+.-||+ -|+.|+. ++| ..|+.+.... +|...+....|.|+. +.-++.+..
T Consensus 312 ~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E 385 (591)
T 2zux_A 312 SSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHE 385 (591)
T ss_dssp TTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECC
T ss_pred CCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEec
Confidence 211 1233344444442 2333321 223 2334443332 577777777777764 334444444
Q ss_pred CC----EEEEEECCCCeEEEEecC--CCCcEEEEEEcCC
Q 008050 517 DM----TVKVWSGRDFKLVKSLSG--HEAKVTSLDIHPD 549 (579)
Q Consensus 517 dg----~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~d 549 (579)
++ -..+.|..+++.+..... +.+......|.|+
T Consensus 386 ~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 386 DKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp CTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTT
T ss_pred CCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCC
Confidence 31 355688888888877653 3344444445554
No 393
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.36 E-value=1.6e+02 Score=23.39 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=12.6
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeC
Q 008050 332 TDVTFSPVSNHVATSSADRTARLWNT 357 (579)
Q Consensus 332 ~~l~~sp~~~~l~s~s~dg~I~iwd~ 357 (579)
..+.+..+|++++.. .++.+ +|..
T Consensus 59 ~~l~l~~dGNLVl~d-~~~~~-iW~S 82 (113)
T 3mez_B 59 CFMRLGHSGELDITD-DRLNT-VFVS 82 (113)
T ss_dssp CEEEECTTSCEEEEC-TTSCE-EEEC
T ss_pred EEEEEeCCCcEEEEC-CCCCE-EEEC
Confidence 345666666665543 23333 5663
No 394
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.53 E-value=1.1e+02 Score=32.51 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=41.5
Q ss_pred CCeEEEEEeeCCCeEEE-EEEC-----------CCEEEEEECCCCeEEEEecCC-CCcEEEEEEcCCCCEEEEEE
Q 008050 496 NLISQVKFEPQEGYFLV-TGSY-----------DMTVKVWSGRDFKLVKSLSGH-EAKVTSLDIHPDEQSIATVS 557 (579)
Q Consensus 496 ~~V~~v~~sp~~~~~l~-sgs~-----------dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~L~s~s 557 (579)
+....|.|+++ |.+.+ +-.. .+.|..++..++++...+.+. ...++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34677999987 44444 3221 226777777778766656543 45799999999999987754
No 395
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=35.13 E-value=2.8e+02 Score=25.75 Aligned_cols=141 Identities=11% Similarity=-0.036 Sum_probs=79.2
Q ss_pred EEEEEeCCCcEEEEeCCCCe--eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------CcEEE-EE-ecC
Q 008050 342 HVATSSADRTARLWNTDGSL--LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDT-------GVELL-LQ-EGH 410 (579)
Q Consensus 342 ~l~s~s~dg~I~iwd~~~~~--~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~-------~~~~~-~~-~~~ 410 (579)
.+++.+.+|.|+--...+.. ...+.. .+.+..+........|+..+..|.++-+.... |..+. .+ ...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 45566777777665533211 111222 23344444444555677778888876655421 11100 00 112
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------CCeEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEC
Q 008050 411 SRSVYGIAFHPDGSLAASCGLDALARVWDLR-------TGRSILALEGHVKPVLGISFS-PNGYHLATGGEDNTCRIWDL 482 (579)
Q Consensus 411 ~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~-------~~~~~~~~~~~~~~I~si~~s-p~g~~l~tgs~Dg~I~iwDl 482 (579)
...|.++....++.+|+.++..|.++...+. .+.....++.. ..+..+... ..+..|+..+.+|.+..|++
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 3456666443456678889999999988763 23344444432 345555555 34567888899999988886
Q ss_pred CC
Q 008050 483 RK 484 (579)
Q Consensus 483 ~~ 484 (579)
..
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 396
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=34.22 E-value=1.8e+02 Score=23.17 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=14.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 008050 415 YGIAFHPDGSLAASCGLDALARVWDLR 441 (579)
Q Consensus 415 ~~l~~spdg~~l~sg~~dg~I~iwd~~ 441 (579)
..+.+..+|++++... ++.+ +|...
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 3566777777666533 3433 66644
No 397
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.79 E-value=58 Score=35.61 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeC
Q 008050 456 VLGISFSPNGYHLATGGEDNTCRIWDLRKRKSLYVIPA 493 (579)
Q Consensus 456 I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~~~~~~~ 493 (579)
|.++.+ +..++++-+.|.++|+||+++++++.....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 555555 467999999999999999999998887765
No 398
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=33.48 E-value=4e+02 Score=27.05 Aligned_cols=191 Identities=12% Similarity=0.058 Sum_probs=99.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECC---CCcE-----------E-EEEec-CCCCeEEEEEcCCCCEEEEEeCCC
Q 008050 370 DRLARMAFHPSGKYLGTTSFDKTWRLWDVD---TGVE-----------L-LLQEG-HSRSVYGIAFHPDGSLAASCGLDA 433 (579)
Q Consensus 370 ~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~---~~~~-----------~-~~~~~-~~~~V~~l~~spdg~~l~sg~~dg 433 (579)
..|..++.. ..+.+....+|.|+.|-.. .++. . ..... ....|..|+... ...+.-..+|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~--~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK--DHILFLDEEG 223 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS--SEEEEEETTS
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC--CeEEEEeCCC
Confidence 345555443 4556666788999999751 1110 0 01111 112366666543 3555556889
Q ss_pred eEEEEeCCCCeEE-------------EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------ee
Q 008050 434 LARVWDLRTGRSI-------------LALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK------------SL 488 (579)
Q Consensus 434 ~I~iwd~~~~~~~-------------~~~~~~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~------------~~ 488 (579)
.|+.|-....-.+ .-.......|..|+.. ..+.++-..+|.|+.|-....- ..
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCcee
Confidence 9999964321100 0000011346666664 3355566678999999644211 11
Q ss_pred E---EEeC-CCCCeEEEEEeeCCCeEEEEEECCCEEEEEECCCC-e------------------------EEEEecCCCC
Q 008050 489 Y---VIPA-HSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDF-K------------------------LVKSLSGHEA 539 (579)
Q Consensus 489 ~---~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg~I~iwd~~~~-~------------------------~~~~l~~h~~ 539 (579)
. .+.. ....|..|+.- ..+.+.-..+|.|+.|-.... + .-..+.+ ..
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G---~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~-~~ 377 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAG---EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN-VP 377 (473)
T ss_dssp EEEEECCCCTTCCEEEEEEC---SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS-SC
T ss_pred eccccccccCCccEEEEEeC---CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC-CC
Confidence 1 1111 12345555543 344444577899999964321 0 0011111 11
Q ss_pred cEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 540 KVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 540 ~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
.|..++.. ....+....||.|+.|-.+..++
T Consensus 378 ~v~~Ia~G--~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 378 KFKSVAAG--SHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCTTCT
T ss_pred ceEEEEeC--CCeEEEEeCCCcEEEeeCCCCCC
Confidence 57777655 33455557899999998876544
No 399
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=31.25 E-value=4.4e+02 Score=26.86 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=71.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCe-----eEEEEeC------CCCCeEEEEEccCC--------CEEEEEeCCCcEE
Q 008050 293 SYSHDGNLLATSSLSGVVKIWSMPRLQ-----KFSALKG------HTERATDVTFSPVS--------NHVATSSADRTAR 353 (579)
Q Consensus 293 ~~spdg~~latgs~dg~I~iwd~~~~~-----~~~~l~~------h~~~V~~l~~sp~~--------~~l~s~s~dg~I~ 353 (579)
.++ +..|.++.+ ...+.||++.... ..+.+.- |.....++.+.+.. .-++..+.+|.|+
T Consensus 44 ~i~-~~GyAlvv~-~~~l~VW~y~~~~~~~~~~c~~lpLp~sd~~~~~~lvsi~~~~~~~~~~s~~~pGlliVsptG~Vr 121 (450)
T 1xks_A 44 NID-EGGWACLVC-KEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSSPSGEAHSTQAVAVMVATREGSIR 121 (450)
T ss_dssp EEC-TTSEEEEEE-TTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGGGEEEEECC-------CTTEEEEEECTTCEEE
T ss_pred EEC-CCcEEEEEe-CCeEEEEeecCCCCCCcccceeccCCccccccCCcEEEEEcCCCccccccCCCceEEEEcCCccEE
Confidence 455 444544443 5689999987541 1122221 22223444433321 2344555599999
Q ss_pred EEe-CCC--CeeEEE-eccc-CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCcEEE-E--EecCC--------------
Q 008050 354 LWN-TDG--SLLNTF-QGHL-DRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELL-L--QEGHS-------------- 411 (579)
Q Consensus 354 iwd-~~~--~~~~~~-~~h~-~~I~~l~~sp~~~~l~s~s~dg~I~lwd~~~~~~~~-~--~~~~~-------------- 411 (579)
.|. +.. +.+... .-.. ..++.+.-. +..-++.+..-|++....++ |+... . +....
T Consensus 122 yWesIs~~~~~~ei~~~L~~~E~vt~l~n~-epaGfIlaTStgrl~~lsir-Gkp~l~~~~l~~~~G~l~gi~~~~sSl~ 199 (450)
T 1xks_A 122 YWPSLAGEDTYTEAFVDSGGDKTYSFLTAV-QGGSFILSSSGSQLIRLIPE-SSGKIHQHILPQGQGMLSGIGRKVSSLF 199 (450)
T ss_dssp EESCTTCTTCCEEEECC----CCEEEEEEE-TTTEEEEEETTCCEEEEEEC-TTSCEEEEECTTCCCC------------
T ss_pred EccccCCCCceEEEEecCCCCceEEEEeec-CCceEEEEeccceEEEEEec-CCceEEEEEecCCCcccccccccccccc
Confidence 998 322 222211 1122 344444333 34446666667777776665 32211 1 00000
Q ss_pred ------CC--eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Q 008050 412 ------RS--VYGIAFHPDGSLAASCGLDALARVWDLRTGR 444 (579)
Q Consensus 412 ------~~--V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~ 444 (579)
.. ..++.++..++.+++.+. +.+..|++.++.
T Consensus 200 G~~s~~~~ia~v~~~~~~g~r~v~ilT~-~~lq~W~l~~~~ 239 (450)
T 1xks_A 200 GILSPSSDLTLSSVLWDRERSSFYSLTS-SNISKWELDDSS 239 (450)
T ss_dssp ------CCCCEEEEEEETTTTEEEEEES-SEEEEEEECSSC
T ss_pred cccCCCcceEEEEeccCCCcEEEEEEcC-CceEEEEecCCC
Confidence 00 123444556667776665 459999996553
No 400
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.85 E-value=4.3e+02 Score=26.06 Aligned_cols=231 Identities=10% Similarity=0.085 Sum_probs=117.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--C---------e-eEEEec-ccCCeEEEEEecCCCEEEEEeCC-CeEE
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDG--S---------L-LNTFQG-HLDRLARMAFHPSGKYLGTTSFD-KTWR 394 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~---------~-~~~~~~-h~~~I~~l~~sp~~~~l~s~s~d-g~I~ 394 (579)
..|..|+.. ..+.+.-..||.|+.|-.+. + . ...+.. ....|..++.. ..+.+....+ +.|+
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEE
Confidence 345555543 34555566788888885321 1 0 111111 12245555544 3344444445 5899
Q ss_pred EEECCCC---------cEEE--EEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-e---------EE-EEEec
Q 008050 395 LWDVDTG---------VELL--LQE-GHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTG-R---------SI-LALEG 451 (579)
Q Consensus 395 lwd~~~~---------~~~~--~~~-~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~-~---------~~-~~~~~ 451 (579)
.|-.... .... ... .....|..|+... ...+.-..+|.|+.|-.... + .. ..+..
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~--~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD--SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh--hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 9964321 0111 111 1223566666543 34555568899999965421 1 11 11111
Q ss_pred -CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------ee-EEEeC-CCCCeEEEEEeeCCCeEEEEEECCC
Q 008050 452 -HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRK----------SL-YVIPA-HSNLISQVKFEPQEGYFLVTGSYDM 518 (579)
Q Consensus 452 -~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~----------~~-~~~~~-~~~~V~~v~~sp~~~~~l~sgs~dg 518 (579)
....|..|+... .+.+.-..+|.|+.|-..... .. ..+.. ....|..++.- ..+.+.-..+|
T Consensus 170 ~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G---~~ht~~l~~~G 244 (406)
T 4d9s_A 170 FEGIRIKMVAAGA--EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG---WRHTISVSYSG 244 (406)
T ss_dssp GTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC---SSEEEEEETTC
T ss_pred cCCCcEEEEecCC--CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC---CCcEEEEcCCC
Confidence 122566666643 356666789999999644311 01 11111 12345555543 44555567899
Q ss_pred EEEEEECCCCe-----------EEEEecC-CCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcCCCCc
Q 008050 519 TVKVWSGRDFK-----------LVKSLSG-HEAKVTSLDIHPDEQSIATVSHDRWIKLWSTRNKGD 572 (579)
Q Consensus 519 ~I~iwd~~~~~-----------~~~~l~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~~~~~ 572 (579)
.|+.|-....- ....+.. ....|..++.. ..+.+....||.|+.|-.+..++
T Consensus 245 ~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~Gq 308 (406)
T 4d9s_A 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQ 308 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred CEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCC
Confidence 99999643221 1111211 22346666654 34455566899999998776543
No 401
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=27.32 E-value=2.3e+02 Score=22.38 Aligned_cols=14 Identities=7% Similarity=0.123 Sum_probs=8.1
Q ss_pred EEEEEecCCCEEEE
Q 008050 373 ARMAFHPSGKYLGT 386 (579)
Q Consensus 373 ~~l~~sp~~~~l~s 386 (579)
..+.+..+|++++.
T Consensus 52 ~~l~l~~dGNLVl~ 65 (111)
T 3mez_A 52 CTLRLNNRGQLEIH 65 (111)
T ss_dssp CEEEECTTSCEEEE
T ss_pred EEEEEcCCCcEEEE
Confidence 34566666665554
No 402
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=26.42 E-value=5.9e+02 Score=26.80 Aligned_cols=147 Identities=13% Similarity=0.042 Sum_probs=82.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEec-------------------CC----C-C-eEEEEEcCCCCEEEEEe---CCC
Q 008050 424 SLAASCGLDALARVWDLRTGRSILALEG-------------------HV----K-P-VLGISFSPNGYHLATGG---EDN 475 (579)
Q Consensus 424 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~-------------------~~----~-~-I~si~~sp~g~~l~tgs---~Dg 475 (579)
.+++.|+.||.++.+|.. |+....|-. |. + + +..+.+...-+.++.|+ ...
T Consensus 86 ~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG~ 164 (570)
T 3hx6_A 86 PRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGGK 164 (570)
T ss_dssp CEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSCS
T ss_pred cEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCCc
Confidence 588899999999999977 655444310 10 1 1 22233321113344444 233
Q ss_pred cEEEEECCC---CceeEEEeCCC-------CCeEEEEEeeCCCeEEEEEEC------CCEEEEEECCCCeEEEEecCCC-
Q 008050 476 TCRIWDLRK---RKSLYVIPAHS-------NLISQVKFEPQEGYFLVTGSY------DMTVKVWSGRDFKLVKSLSGHE- 538 (579)
Q Consensus 476 ~I~iwDl~~---~~~~~~~~~~~-------~~V~~v~~sp~~~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~h~- 538 (579)
.++..|+.+ .+.+..+.... -.--.|....++..+++.|+. ...|+|+|+.++.++..+....
T Consensus 165 ~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~~ 244 (570)
T 3hx6_A 165 GLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTGR 244 (570)
T ss_dssp EEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECCS
T ss_pred EEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCCC
Confidence 577778765 44566665211 000112222233344444432 3579999999999998875221
Q ss_pred ----CcEEEEE-EcCC--C--CEEEEEEcCCeEEEEEcCCCC
Q 008050 539 ----AKVTSLD-IHPD--E--QSIATVSHDRWIKLWSTRNKG 571 (579)
Q Consensus 539 ----~~V~~l~-~s~d--g--~~L~s~s~Dg~I~iW~~~~~~ 571 (579)
..+..+. +..+ | .+++.|...|.|.-+|+....
T Consensus 245 ~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 245 TGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp TTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred CccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 2233333 2223 3 469999999999989987654
No 403
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=25.99 E-value=4.9e+02 Score=25.68 Aligned_cols=230 Identities=10% Similarity=0.004 Sum_probs=121.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC--Ce-----------eEEEecccCCeEEEEEecCCCEEEEEeCCCeEEE
Q 008050 329 ERATDVTFSPVSNHVATSSADRTARLWNTDG--SL-----------LNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRL 395 (579)
Q Consensus 329 ~~V~~l~~sp~~~~l~s~s~dg~I~iwd~~~--~~-----------~~~~~~h~~~I~~l~~sp~~~~l~s~s~dg~I~l 395 (579)
..|..|+.. ..+.+.-..||.|+.|-.+. .. .-........|..++.. ..+.+..+.||.|+.
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G--~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG--DSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecC--CCeEEEEcCCCcEEE
Confidence 456666654 35556667889999996321 10 00111112355555543 446666778899999
Q ss_pred EEC--CCC-c----------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeEE----------------
Q 008050 396 WDV--DTG-V----------ELLLQEGHSRSVYGIAFHPDGSLAASCGLDALARVWDLRTGRSI---------------- 446 (579)
Q Consensus 396 wd~--~~~-~----------~~~~~~~~~~~V~~l~~spdg~~l~sg~~dg~I~iwd~~~~~~~---------------- 446 (579)
|-. ... + ...........|..|+.-.+ ..+.-+.+|.|+.|-....-.+
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 212 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGND--HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGL 212 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSS--EEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGH
T ss_pred eeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCc--eEEEEcCCCCEEEeeCCCCCccCCCccccccccccccc
Confidence 975 221 1 00111122345666655433 4455567888888865431000
Q ss_pred ------EEEec------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eEEEeC-CC--CCeEE
Q 008050 447 ------LALEG------HVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKRKS-----------LYVIPA-HS--NLISQ 500 (579)
Q Consensus 447 ------~~~~~------~~~~I~si~~sp~g~~l~tgs~Dg~I~iwDl~~~~~-----------~~~~~~-~~--~~V~~ 500 (579)
..... ....|..|+...+ +.++-..+|.|+.|-....-. ...+.. .. ..|..
T Consensus 213 ~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 213 ERLLVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp HHHHSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred cccccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 00110 2235677766544 445556899999997643110 111111 11 23555
Q ss_pred EEEeeCCCeEEEEEECCCEEEEEECCCC-----------e-EEEEecCCCCcEEEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 008050 501 VKFEPQEGYFLVTGSYDMTVKVWSGRDF-----------K-LVKSLSGHEAKVTSLDIHPDEQSIATVSHDRWIKLWSTR 568 (579)
Q Consensus 501 v~~sp~~~~~l~sgs~dg~I~iwd~~~~-----------~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~iW~~~ 568 (579)
++.- ..+.+.-..||.|+.|-.... . .-..+.. -..|..++.. ..+.+....||.|+.|-.+
T Consensus 291 ia~G---~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G--~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 291 FSGG---QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACG--ASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp EEEC---SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEEC--SSEEEEEETTSCEEEEECC
T ss_pred Eecc---cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEEC--cceEEEEeCCCCEEEecCC
Confidence 5543 344455567999999964321 1 1112222 2267777665 3355556689999999887
Q ss_pred CCCc
Q 008050 569 NKGD 572 (579)
Q Consensus 569 ~~~~ 572 (579)
..++
T Consensus 365 ~~gq 368 (413)
T 1a12_A 365 TNYQ 368 (413)
T ss_dssp TTST
T ss_pred CCCC
Confidence 6443
No 404
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=24.96 E-value=46 Score=19.08 Aligned_cols=6 Identities=50% Similarity=1.315 Sum_probs=2.9
Q ss_pred CCCCCC
Q 008050 84 PPVPAQ 89 (579)
Q Consensus 84 ~~~~~~ 89 (579)
|++|++
T Consensus 16 P~tp~r 21 (26)
T 2p4r_T 16 PPTPRR 21 (26)
T ss_pred CCCCCC
Confidence 455544
No 405
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.51 E-value=2.4e+02 Score=22.27 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=8.2
Q ss_pred EEEEcCCCCEEEE
Q 008050 416 GIAFHPDGSLAAS 428 (579)
Q Consensus 416 ~l~~spdg~~l~s 428 (579)
.+.+..+|++++.
T Consensus 53 ~l~l~~dGNLVl~ 65 (111)
T 3mez_A 53 TLRLNNRGQLEIH 65 (111)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEcCCCcEEEE
Confidence 4566667766654
Done!