BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008051
(579 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/560 (57%), Positives = 404/560 (72%), Gaps = 5/560 (0%)
Query: 19 KQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILS 78
++ + V + + KD NS SLVCK WYE E+ R VFIGNCYAVSP + RRFP + S
Sbjct: 11 EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70
Query: 79 VTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFP 138
V LKGKP F+DFNLVP WG ++PW+ A + Y LEE+RLKRM V+D+ LE +A SF
Sbjct: 71 VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130
Query: 139 NFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLN 198
NFKVL LSSC+GFSTDGLAAIA C+NL ELD++E+ ++D+SG WLS FP+++TSL LN
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190
Query: 199 FANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELT 258
+ + SEV F ALE+LV+RC +LK LK+N+++ LE+L LL APQL +LGTG ++ E+
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250
Query: 259 DDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLL 318
D + L A + CK + LSG W A Y PA+ VC+ LT LNLSYAT+ S +LVKLL
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310
Query: 319 MHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHG 378
CP L+RLWVLD +ED GLE + S+C L ELRVFP++PF E +TE G ++VS G
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370
Query: 379 CPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRT 438
CP+L+ VLYFC+ MTNAA+ TI RN PN T FRLCI+ P PDY+T EP+D FGA+V
Sbjct: 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430
Query: 439 CTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRD 498
C +L+RLSLSGLLTD FEYIG YAK +E+LSVAFAG SD GM VL GC LRK EIRD
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490
Query: 499 CPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDNQ--- 555
CPFGD ALL+ K E+MRSLWMS+C+V+ CKLL K P+LNVEVI E + D++
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550
Query: 556 --ADKVYVYRTVAGPRKDAP 573
++V++YRTVAGPR D P
Sbjct: 551 CPVERVFIYRTVAGPRFDMP 570
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 187/583 (32%), Positives = 304/583 (52%), Gaps = 26/583 (4%)
Query: 15 VDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFP 74
V +V I +V+ +T KD +SASLVC+ W++ + +R HV + CY +P+ L+RRFP
Sbjct: 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFP 73
Query: 75 NILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLA 134
N+ S+ LKGKPR + FNL+P++WG + PW+ ++ L+ + +RM VSD L+ LA
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA 133
Query: 135 VSFP-NFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTS 193
+ + + L L C GF+TDGL +I T+C+ + L ++E+ + G WL + TS
Sbjct: 134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193
Query: 194 LEVLNFANVN-SEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGS 252
LEVLNF +++ LE + C+SL +KV LE L A L + GS
Sbjct: 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252
Query: 253 FSQEL-TDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGS 311
++++ ++ L C+ GL P L P A + L+L YA L +
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCR-----LGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307
Query: 312 SELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRV-FPADPFDEEITYG-VTE 369
+ L+ CP L+ L + + DRGLE + C L+ LR+ AD E G V++
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367
Query: 370 AGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMD 429
G +A++ GC L+Y+ + +TN ++ +I N FRL +++ + + +T+ P+D
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD--REERITDLPLD 425
Query: 430 EAFGAVVRTCTNLQRLSL---SGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLR 486
+++ C L+R + G LTDL YIGQY+ N+ + + + G SD G+ R
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485
Query: 487 GCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVI 546
GCP L+K E+R C F + A+ + + K S+R LW+ +M G L+ +P N+E+I
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545
Query: 547 --KEAESDDNQAD--------KVYVYRTVAGPRKDAPPSVITL 579
+ + Q + + Y ++AG R D P +V L
Sbjct: 546 PSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 115 LEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQEN 174
L+ L L+ + +SD + LA + N L+LS C GFS L + ++C L EL++
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL--- 175
Query: 175 GIEDISGSWLSCFPESFTSLEV---------LNFANVNSEVDFDALEKLVSRCKSLKDLK 225
SW F E + V LN + + L LV RC +L L
Sbjct: 176 -------SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 226 VNKSISLE 233
++ S+ L+
Sbjct: 229 LSDSVMLK 236
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 115 LEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQEN 174
L+ L L+ + +SD + LA + N L+LS C GFS L + ++C L EL++
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL--- 137
Query: 175 GIEDISGSWLSCFPESFTSLEV---------LNFANVNSEVDFDALEKLVSRCKSLKDLK 225
SW F E + V LN + + L LV RC +L L
Sbjct: 138 -------SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 190
Query: 226 VNKSISLE 233
++ S+ L+
Sbjct: 191 LSDSVMLK 198
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 49/225 (21%)
Query: 81 LKGKPRFSDFNLVPQDWGADIHPW--------LVAFADRYPSLEELR----LKRMSVSDE 128
LK + D L+ + ADI P L F ++ ++ L+ L R+ +S
Sbjct: 81 LKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 139
Query: 129 SLEFLAV--SFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSC 186
++ ++ + + LS SS LA + T L LDI N + DIS
Sbjct: 140 TISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT----LERLDISSNKVSDIS------ 189
Query: 187 FPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLV 246
T+LE L A N D L L +L +L +N + QL
Sbjct: 190 VLAKLTNLESL-IATNNQISDITPLGILT----NLDELSLNGN--------------QLK 230
Query: 247 DLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPA 291
D+GT + LTD L+ A N+ N+ LSGL + T L A
Sbjct: 231 DIGTLASLTNLTD-----LDLANNQISNLAPLSGLTKLTELKLGA 270
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 89/225 (39%), Gaps = 49/225 (21%)
Query: 81 LKGKPRFSDFNLVPQDWGADIHPW--------LVAFADRYPSLEELR----LKRMSVSDE 128
LK + D L+ + ADI P L F ++ ++ L+ L R+ +S
Sbjct: 81 LKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 139
Query: 129 SLEFLAV--SFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSC 186
++ ++ + + LS SS LA + T L LDI N + DIS
Sbjct: 140 TISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT----LERLDISSNKVSDIS------ 189
Query: 187 FPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLV 246
T+LE L A N D L L +L +L +N + QL
Sbjct: 190 VLAKLTNLESL-IATNNQISDITPLGILT----NLDELSLNGN--------------QLK 230
Query: 247 DLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPA 291
D+GT + LTD L+ A N+ N+ LSGL + T L A
Sbjct: 231 DIGTLASLTNLTD-----LDLANNQISNLAPLSGLTKLTELKLGA 270
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 484 VLRGCPKLRKFEIRDCPFGDAAL---LSGLD--KCESMRSLWMSACNVTMDGCKLLAS 536
+LR LR+ + D P GDA L GL +C + L + CN+T C+ LAS
Sbjct: 104 MLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCR-LEKLQLEYCNLTATSCEPLAS 160
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 96 DWGADIHPWLVAFADRYPS-LEELRLKRMSVSDESLEFLAVSFPNFKVLS-----LSSC- 148
+ G IH + +R PS ++EL L ++ LE L F + LS L+S
Sbjct: 2 EMGRRIH---LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA 58
Query: 149 --------------DGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSL 194
D + GL +A C NLT L++ N I+D+S E+ SL
Sbjct: 59 NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118
Query: 195 EVLN 198
++ N
Sbjct: 119 DLFN 122
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 480 GMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527
G++ + CP L + D + + L K E+++SL + C VT
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 49/225 (21%)
Query: 81 LKGKPRFSDFNLVPQDWGADIHPW--------LVAFADRYPSLEELR----LKRMSVSDE 128
LK + D L+ + ADI P L F ++ ++ L+ L R+ +S
Sbjct: 81 LKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 139
Query: 129 SLEFLAV--SFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSC 186
++ ++ + + L+ SS LA + T L LDI N + DIS
Sbjct: 140 TISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT----LERLDISSNKVSDIS------ 189
Query: 187 FPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLV 246
T+LE L A N D L L +L +L +N + QL
Sbjct: 190 VLAKLTNLESL-IATNNQISDITPLGILT----NLDELSLNGN--------------QLK 230
Query: 247 DLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPA 291
D+GT + LTD L+ A N+ N+ LSGL + T L A
Sbjct: 231 DIGTLASLTNLTD-----LDLANNQISNLAPLSGLTKLTELKLGA 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,388,204
Number of Sequences: 62578
Number of extensions: 651405
Number of successful extensions: 1510
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 78
length of query: 579
length of database: 14,973,337
effective HSP length: 104
effective length of query: 475
effective length of database: 8,465,225
effective search space: 4020981875
effective search space used: 4020981875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)