Query 008051
Match_columns 579
No_of_seqs 275 out of 3147
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 18:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 9.2E-35 2E-39 262.7 16.4 373 14-547 72-460 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 3E-23 6.5E-28 180.0 11.8 289 10-385 94-392 (419)
3 PLN00113 leucine-rich repeat r 99.9 1.3E-21 2.7E-26 217.2 12.9 109 438-551 450-559 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.9E-21 6.3E-26 214.2 13.7 155 72-251 138-292 (968)
5 KOG4341 F-box protein containi 99.8 3.3E-21 7.1E-26 175.4 7.6 252 280-549 147-437 (483)
6 KOG4194 Membrane glycoprotein 99.7 1.9E-19 4.2E-24 170.5 1.2 343 113-525 78-427 (873)
7 cd00116 LRR_RI Leucine-rich re 99.7 8.9E-16 1.9E-20 148.4 19.1 75 462-536 219-300 (319)
8 KOG4194 Membrane glycoprotein 99.7 3E-18 6.6E-23 162.5 0.7 132 109-252 98-230 (873)
9 cd00116 LRR_RI Leucine-rich re 99.6 1.4E-14 2.9E-19 140.2 18.9 214 293-526 77-319 (319)
10 KOG0444 Cytoskeletal regulator 99.6 2.3E-17 4.9E-22 157.9 -3.4 240 296-566 149-394 (1255)
11 KOG1947 Leucine rich repeat pr 99.5 1.3E-13 2.8E-18 141.8 16.0 284 190-537 159-451 (482)
12 KOG2120 SCF ubiquitin ligase, 99.5 4.6E-14 1E-18 123.4 6.9 204 297-543 185-391 (419)
13 KOG1909 Ran GTPase-activating 99.4 4.6E-12 9.9E-17 113.8 15.5 221 294-543 89-329 (382)
14 KOG1909 Ran GTPase-activating 99.4 1.6E-12 3.5E-17 116.7 12.1 81 105-185 22-113 (382)
15 KOG1947 Leucine rich repeat pr 99.4 1E-12 2.2E-17 135.2 11.1 394 10-524 41-462 (482)
16 PLN03210 Resistant to P. syrin 99.4 1.2E-12 2.6E-17 146.0 11.4 312 139-525 590-904 (1153)
17 KOG0618 Serine/threonine phosp 99.2 5.4E-12 1.2E-16 127.2 3.5 127 381-525 360-487 (1081)
18 KOG0444 Cytoskeletal regulator 99.2 8.3E-13 1.8E-17 127.2 -3.8 60 464-525 268-327 (1255)
19 PLN03210 Resistant to P. syrin 99.1 9.2E-11 2E-15 131.1 9.4 104 137-253 610-714 (1153)
20 KOG3207 Beta-tubulin folding c 99.1 2.5E-11 5.5E-16 112.2 3.2 187 291-501 140-338 (505)
21 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 108.1 2.3 217 293-529 117-341 (505)
22 KOG0618 Serine/threonine phosp 99.0 2.3E-11 5E-16 122.7 -3.0 353 115-529 158-515 (1081)
23 PF12937 F-box-like: F-box-lik 99.0 3.4E-10 7.3E-15 73.3 2.7 36 14-50 1-36 (47)
24 KOG0472 Leucine-rich repeat pr 99.0 4.9E-11 1.1E-15 109.1 -2.3 112 401-531 431-545 (565)
25 PRK15387 E3 ubiquitin-protein 98.9 7.1E-10 1.5E-14 115.1 4.1 64 464-534 402-465 (788)
26 PRK15387 E3 ubiquitin-protein 98.8 6.3E-09 1.4E-13 108.2 6.9 160 297-506 302-462 (788)
27 KOG2982 Uncharacterized conser 98.7 2.4E-09 5.3E-14 94.3 0.8 245 289-579 63-318 (418)
28 COG5238 RNA1 Ran GTPase-activa 98.6 7.2E-07 1.6E-11 78.0 12.2 96 105-201 23-129 (388)
29 PF00646 F-box: F-box domain; 98.6 3E-08 6.5E-13 64.7 2.1 37 13-50 2-38 (48)
30 PF14580 LRR_9: Leucine-rich r 98.5 2.5E-08 5.4E-13 84.4 0.4 130 404-551 18-150 (175)
31 COG5238 RNA1 Ran GTPase-activa 98.5 1.8E-06 4E-11 75.5 10.5 210 295-538 28-266 (388)
32 KOG3665 ZYG-1-like serine/thre 98.4 5.9E-07 1.3E-11 93.3 9.0 130 113-250 60-202 (699)
33 smart00256 FBOX A Receptor for 98.4 4.2E-07 9.1E-12 57.0 4.0 33 17-50 1-33 (41)
34 KOG0472 Leucine-rich repeat pr 98.4 3E-08 6.5E-13 91.3 -2.6 41 461-503 502-542 (565)
35 KOG2982 Uncharacterized conser 98.3 7.2E-07 1.6E-11 79.1 5.3 108 116-230 48-157 (418)
36 PF14580 LRR_9: Leucine-rich r 98.3 8.2E-07 1.8E-11 75.2 5.5 85 111-203 40-124 (175)
37 KOG3665 ZYG-1-like serine/thre 98.3 3.1E-06 6.8E-11 88.0 9.5 132 397-542 140-278 (699)
38 PRK15370 E3 ubiquitin-protein 98.3 3.4E-06 7.3E-11 88.7 9.5 129 381-535 305-436 (754)
39 PRK15370 E3 ubiquitin-protein 98.1 1.3E-05 2.8E-10 84.4 9.0 84 405-506 346-432 (754)
40 KOG4237 Extracellular matrix p 98.0 4.6E-07 9.9E-12 83.5 -2.5 116 105-230 58-175 (498)
41 KOG3864 Uncharacterized conser 98.0 6.2E-06 1.3E-10 69.2 3.8 104 442-547 103-212 (221)
42 KOG4237 Extracellular matrix p 98.0 1.6E-06 3.4E-11 80.1 0.1 49 130-180 58-107 (498)
43 KOG1259 Nischarin, modulator o 97.9 2.9E-06 6.4E-11 75.4 0.7 127 381-527 285-412 (490)
44 KOG4308 LRR-containing protein 97.9 2E-05 4.4E-10 78.5 6.5 238 296-549 203-470 (478)
45 KOG1259 Nischarin, modulator o 97.8 2.3E-06 5.1E-11 76.0 -1.7 225 289-550 174-410 (490)
46 PF13855 LRR_8: Leucine rich r 97.7 2.5E-06 5.4E-11 58.9 -2.0 61 464-526 1-61 (61)
47 PF12799 LRR_4: Leucine Rich r 97.6 8.5E-05 1.9E-09 46.7 3.4 38 489-528 1-38 (44)
48 KOG4658 Apoptotic ATPase [Sign 97.5 6.8E-05 1.5E-09 80.5 4.0 227 111-357 543-781 (889)
49 KOG3864 Uncharacterized conser 97.3 0.00018 3.9E-09 60.7 3.1 84 114-202 102-186 (221)
50 KOG1859 Leucine-rich repeat pr 97.3 1.3E-05 2.7E-10 80.1 -4.2 106 402-526 184-291 (1096)
51 KOG0617 Ras suppressor protein 97.1 1.6E-05 3.6E-10 64.7 -5.2 126 112-250 55-180 (264)
52 KOG4658 Apoptotic ATPase [Sign 97.0 0.00016 3.5E-09 77.7 0.4 58 190-251 569-626 (889)
53 PF12799 LRR_4: Leucine Rich r 97.0 0.0006 1.3E-08 42.8 2.6 38 464-503 1-38 (44)
54 PF13855 LRR_8: Leucine rich r 97.0 0.00034 7.3E-09 48.1 1.3 59 138-202 1-59 (61)
55 KOG4308 LRR-containing protein 96.9 0.00047 1E-08 68.9 2.3 192 299-506 89-307 (478)
56 PLN03150 hypothetical protein; 96.7 0.0018 3.8E-08 68.1 5.0 64 462-527 440-503 (623)
57 KOG0617 Ras suppressor protein 96.7 5.9E-05 1.3E-09 61.5 -4.5 127 112-251 32-158 (264)
58 KOG2123 Uncharacterized conser 96.7 0.00048 1E-08 61.1 0.2 120 404-541 18-144 (388)
59 KOG1859 Leucine-rich repeat pr 96.6 0.00048 1E-08 69.4 0.1 107 379-502 186-292 (1096)
60 PLN03215 ascorbic acid mannose 96.6 0.0018 3.8E-08 61.6 3.6 38 13-50 3-40 (373)
61 KOG1644 U2-associated snRNP A' 96.6 0.0021 4.5E-08 54.4 3.4 90 110-202 61-150 (233)
62 KOG2123 Uncharacterized conser 96.6 0.0007 1.5E-08 60.1 0.5 125 367-510 4-136 (388)
63 PLN03150 hypothetical protein; 96.4 0.0039 8.4E-08 65.5 4.8 87 436-525 438-526 (623)
64 KOG2739 Leucine-rich acidic nu 96.2 0.0017 3.6E-08 57.5 0.8 83 439-521 64-150 (260)
65 KOG2997 F-box protein FBX9 [Ge 96.2 0.0045 9.7E-08 56.0 3.3 39 12-50 105-147 (366)
66 smart00367 LRR_CC Leucine-rich 96.1 0.0052 1.1E-07 33.5 2.2 23 513-535 1-24 (26)
67 PF13516 LRR_6: Leucine Rich r 95.8 0.0072 1.6E-07 32.2 1.9 23 513-535 1-23 (24)
68 KOG2739 Leucine-rich acidic nu 95.7 0.004 8.6E-08 55.1 0.8 65 462-527 63-129 (260)
69 KOG1644 U2-associated snRNP A' 95.5 0.015 3.3E-07 49.4 3.7 82 461-543 61-144 (233)
70 KOG0281 Beta-TrCP (transducin 95.4 0.013 2.8E-07 53.5 3.2 38 11-49 72-113 (499)
71 COG4886 Leucine-rich repeat (L 95.4 0.0088 1.9E-07 59.6 2.3 101 138-251 116-217 (394)
72 smart00367 LRR_CC Leucine-rich 95.1 0.033 7.2E-07 30.3 2.9 24 137-160 1-24 (26)
73 PF13013 F-box-like_2: F-box-l 94.9 0.036 7.8E-07 42.5 3.9 32 11-43 19-50 (109)
74 smart00368 LRR_RI Leucine rich 94.6 0.042 9E-07 30.5 2.5 25 514-538 2-26 (28)
75 PF13516 LRR_6: Leucine Rich r 94.3 0.032 6.9E-07 29.6 1.7 17 489-505 2-18 (24)
76 COG4886 Leucine-rich repeat (L 94.3 0.027 5.9E-07 56.1 2.4 129 379-527 162-290 (394)
77 PRK15386 type III secretion pr 93.5 0.069 1.5E-06 51.8 3.5 32 464-499 156-187 (426)
78 KOG4579 Leucine-rich repeat (L 93.5 0.024 5.2E-07 45.0 0.3 97 440-540 53-149 (177)
79 smart00368 LRR_RI Leucine rich 92.4 0.15 3.3E-06 28.2 2.4 22 465-486 3-24 (28)
80 KOG0531 Protein phosphatase 1, 91.8 0.049 1.1E-06 54.5 0.0 107 402-527 92-199 (414)
81 KOG0531 Protein phosphatase 1, 91.8 0.047 1E-06 54.6 -0.1 127 379-527 94-221 (414)
82 KOG4579 Leucine-rich repeat (L 91.1 0.08 1.7E-06 42.2 0.5 18 162-179 75-92 (177)
83 KOG3763 mRNA export factor TAP 90.9 0.49 1.1E-05 47.1 5.7 91 456-549 210-309 (585)
84 PF13504 LRR_7: Leucine rich r 87.7 0.37 8E-06 23.0 1.2 11 490-500 2-12 (17)
85 KOG0274 Cdc4 and related F-box 87.2 0.25 5.4E-06 50.6 1.0 41 8-49 102-142 (537)
86 PRK15386 type III secretion pr 86.8 0.62 1.3E-05 45.4 3.3 54 111-174 50-104 (426)
87 PF09372 PRANC: PRANC domain; 82.8 1.1 2.4E-05 34.0 2.5 26 11-37 69-94 (97)
88 KOG0532 Leucine-rich repeat (L 80.7 0.76 1.6E-05 46.0 1.1 35 466-502 213-247 (722)
89 PF00560 LRR_1: Leucine Rich R 74.7 1.6 3.5E-05 22.4 0.8 12 491-502 2-13 (22)
90 KOG3763 mRNA export factor TAP 74.6 4.8 0.0001 40.4 4.6 38 137-174 217-254 (585)
91 KOG3926 F-box proteins [Amino 73.6 5.7 0.00012 35.7 4.4 40 10-49 198-237 (332)
92 KOG3735 Tropomodulin and leiom 59.8 9 0.00019 35.9 3.0 99 102-200 187-291 (353)
93 smart00369 LRR_TYP Leucine-ric 58.0 8.8 0.00019 20.4 1.7 17 164-180 2-18 (26)
94 smart00370 LRR Leucine-rich re 58.0 8.8 0.00019 20.4 1.7 17 164-180 2-18 (26)
95 PF13306 LRR_5: Leucine rich r 57.7 6.8 0.00015 31.4 1.8 59 110-173 32-90 (129)
96 KOG0532 Leucine-rich repeat (L 55.3 1.7 3.6E-05 43.7 -2.5 80 138-230 166-245 (722)
97 smart00365 LRR_SD22 Leucine-ri 52.6 13 0.00028 20.2 1.7 13 489-501 2-14 (26)
98 KOG3735 Tropomodulin and leiom 50.4 36 0.00078 32.1 5.3 87 435-521 193-290 (353)
99 PF07723 LRR_2: Leucine Rich R 49.7 18 0.0004 19.5 2.1 24 299-322 2-26 (26)
100 KOG2502 Tub family proteins [G 35.8 24 0.00052 33.3 1.8 38 12-49 43-87 (355)
101 smart00364 LRR_BAC Leucine-ric 27.3 36 0.00078 18.5 0.9 13 490-502 3-15 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=9.2e-35 Score=262.72 Aligned_cols=373 Identities=23% Similarity=0.372 Sum_probs=268.6
Q ss_pred cccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHh--hcccceEEecccccc--Ch--HHHHhhCCCceEEEcCCCCcc
Q 008051 14 EVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAE--QLSRTHVFIGNCYAV--SP--EILTRRFPNILSVTLKGKPRF 87 (579)
Q Consensus 14 ~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~--~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~L~l~~~~~~ 87 (579)
.-.||+|++..||++|+ .+.+.+++.||+.|+..| +..|.++.+...... .+ +.+.+++.
T Consensus 72 ~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcg------------- 137 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCG------------- 137 (483)
T ss_pred cccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhc-------------
Confidence 34599999999999999 899999999999999986 455666554332211 11 22333332
Q ss_pred ccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcc-cChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCC
Q 008051 88 SDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMS-VSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNL 166 (579)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L 166 (579)
..|++|.+.++. +.+..+..+..++|++++|.+.+|.++++..+..+.+.|++|
T Consensus 138 -------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l 192 (483)
T KOG4341|consen 138 -------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKL 192 (483)
T ss_pred -------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchh
Confidence 244455555543 445556666666677777777777666666666666667777
Q ss_pred CeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCe
Q 008051 167 TELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLV 246 (579)
Q Consensus 167 ~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 246 (579)
++|++..|. .++...+..+...|++|++|+++.|..+.
T Consensus 193 ~~l~L~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~------------- 230 (483)
T KOG4341|consen 193 RHLNLHSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQIS------------- 230 (483)
T ss_pred hhhhhcccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCchhh-------------
Confidence 766665543 13444444455566666666665554211
Q ss_pred eecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcCCcCc
Q 008051 247 DLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHCPLLK 325 (579)
Q Consensus 247 ~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~ 325 (579)
..++..+..++..++.+...||. ..
T Consensus 231 ---------------------------------------~~gv~~~~rG~~~l~~~~~kGC~e~~--------------- 256 (483)
T KOG4341|consen 231 ---------------------------------------GNGVQALQRGCKELEKLSLKGCLELE--------------- 256 (483)
T ss_pred ---------------------------------------cCcchHHhccchhhhhhhhccccccc---------------
Confidence 11222233333334444333443 22
Q ss_pred EEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhh-hhcCcCCCHHHHHHHHHhC
Q 008051 326 RLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYV-LYFCQAMTNAAVATIVRNC 404 (579)
Q Consensus 326 ~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L-~~~~~~~~~~~l~~l~~~~ 404 (579)
++.+..+..+++-+.++++..|+. +++.++..+..+|..|+.| ..+|..+++..+.++.+++
T Consensus 257 ---------le~l~~~~~~~~~i~~lnl~~c~~--------lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 257 ---------LEALLKAAAYCLEILKLNLQHCNQ--------LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred ---------HHHHHHHhccChHhhccchhhhcc--------ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 334444445566666677666642 8888888888888889999 5678889999999999999
Q ss_pred CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc--ccChHHHHHHHhcccCcCeeeccccC-CChHHH
Q 008051 405 PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG--LLTDLTFEYIGQYAKNLELLSVAFAG-SSDWGM 481 (579)
Q Consensus 405 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~ 481 (579)
++|+.|.+..| .+++ +.++..+..+++.|+.+++.+ .+.|..+..+..+|+.|+.|.++.|. ++|+|+
T Consensus 320 ~~L~~l~l~~c-----~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 320 HNLQVLELSGC-----QQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred CceEEEecccc-----chhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 99999999874 4577 899999999999999999988 57787888999999999999999998 799988
Q ss_pred HHHHhC---CCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc-cChhHHHHHhhcCCCceEEEec
Q 008051 482 QCVLRG---CPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN-VTMDGCKLLASKKPRLNVEVIK 547 (579)
Q Consensus 482 ~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~~p~l~~~~~~ 547 (579)
..+-.. ...|+.+.+++|+.+.+...+.+..|++|+.+++.+|+ ++.+++..++.++|+++|.-+-
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 777443 66899999999987777788999999999999999999 9999999999999999886554
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3e-23 Score=179.97 Aligned_cols=289 Identities=20% Similarity=0.221 Sum_probs=157.4
Q ss_pred CCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhhcccceEEecccc-ccCh---HHHHhhCCCceEEEcCCCC
Q 008051 10 QNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCY-AVSP---EILTRRFPNILSVTLKGKP 85 (579)
Q Consensus 10 ~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~L~l~~~~ 85 (579)
+.-.|+.|||||+..||+.|. .+++.+++.||||||.++.....+..++... .+.| +++.++ .+..+.+. .
T Consensus 94 pgv~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rla--r 168 (419)
T KOG2120|consen 94 PGVSWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLA--R 168 (419)
T ss_pred CCCCcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcc--h
Confidence 445699999999999999999 8999999999999999975333333322211 2233 222221 12222222 1
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHh-cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCC
Q 008051 86 RFSDFNLVPQDWGADIHPWLVAFAD-RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCK 164 (579)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 164 (579)
.+.+. +.+.+... .-..|++|||++..++...+..+...|.+|+.|++.+. .+.+.-...++ ...
T Consensus 169 ~~~~~------------prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iA-kN~ 234 (419)
T KOG2120|consen 169 SFMDQ------------PRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIA-KNS 234 (419)
T ss_pred hhhcC------------chhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHh-ccc
Confidence 11111 11111111 12346666666666666666666666666666666665 44443333333 456
Q ss_pred CCCeEeccCC-CcccccccccccccccCCccceeecccccCCCCHHHHHHHHHh-CCCCCeeEecCccChHHHHHHHhhC
Q 008051 165 NLTELDIQEN-GIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSR-CKSLKDLKVNKSISLEQLQKLLVLA 242 (579)
Q Consensus 165 ~L~~L~l~~~-~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~l~~~~~~~ 242 (579)
+|+.|+++.| .++..+ ++.+..+|+.|.+|+++.|. ...+.+..++.+ -++|+.|+++|+...
T Consensus 235 ~L~~lnlsm~sG~t~n~---~~ll~~scs~L~~LNlsWc~--l~~~~Vtv~V~hise~l~~LNlsG~rrn---------- 299 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENA---LQLLLSSCSRLDELNLSWCF--LFTEKVTVAVAHISETLTQLNLSGYRRN---------- 299 (419)
T ss_pred cceeeccccccccchhH---HHHHHHhhhhHhhcCchHhh--ccchhhhHHHhhhchhhhhhhhhhhHhh----------
Confidence 6666666666 344433 33334566666666666664 233334333333 356777777766511
Q ss_pred CCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcC
Q 008051 243 PQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHC 321 (579)
Q Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~ 321 (579)
.....+..+...||+|.+|++++|. +++ +....+-.+
T Consensus 300 -----------------------------------------l~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf 337 (419)
T KOG2120|consen 300 -----------------------------------------LQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKF 337 (419)
T ss_pred -----------------------------------------hhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhc
Confidence 0111233444556666666666666 444 333334456
Q ss_pred CcCcEEeccCc--cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhh
Q 008051 322 PLLKRLWVLDT--VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYV 385 (579)
Q Consensus 322 ~~L~~L~l~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 385 (579)
+.|+.|.++.| +..+.+..+ ...|.|..|++.+| +++..+..+...||+|+.-
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~----------vsdt~mel~~e~~~~lkin 392 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC----------VSDTTMELLKEMLSHLKIN 392 (419)
T ss_pred chheeeehhhhcCCChHHeeee-ccCcceEEEEeccc----------cCchHHHHHHHhCcccccc
Confidence 66666666654 222222222 33566777777655 5555555555556666543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.3e-21 Score=217.17 Aligned_cols=109 Identities=18% Similarity=0.121 Sum_probs=70.5
Q ss_pred cCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCC
Q 008051 438 TCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESM 516 (579)
Q Consensus 438 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 516 (579)
.+++|+.|+++++ +... +... ...++|+.|++++|.++... ...+.++++|++|++++|.+... ++..+.++++|
T Consensus 450 ~l~~L~~L~L~~n~~~~~-~p~~-~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 525 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGG-LPDS-FGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSENKLSGE-IPDELSSCKKL 525 (968)
T ss_pred cCCCCcEEECcCceeeee-cCcc-cccccceEEECcCCccCCcc-ChhhhhhhccCEEECcCCcceee-CChHHcCccCC
Confidence 4567777777652 2111 1111 12467888888888875432 22345678899999999987754 45667788999
Q ss_pred cEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 517 RSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 517 ~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
+.|++++|.++......+ ..++.++.-.+..+..
T Consensus 526 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASF-SEMPVLSQLDLSQNQL 559 (968)
T ss_pred CEEECCCCcccccCChhH-hCcccCCEEECCCCcc
Confidence 999999999775443333 3567777666666644
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=2.9e-21 Score=214.25 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=71.9
Q ss_pred hCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCC
Q 008051 72 RFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGF 151 (579)
Q Consensus 72 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 151 (579)
..++|++|+++++..... .| .....+++|++|+++++.+.......+. .+++|++|+++++ .+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~---~p------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l 200 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGE---IP------------NDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASN-QL 200 (968)
T ss_pred ccCCCCEEECcCCccccc---CC------------hHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCC-CC
Confidence 456777887776532111 11 1123456666666666654432222333 5566666666655 22
Q ss_pred ChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccC
Q 008051 152 STDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSIS 231 (579)
Q Consensus 152 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 231 (579)
+.. ++..+..+++|++|++++|.+.......+ ..+++|++|+++++. +. ..++..+..+++|+.|.+.++.-
T Consensus 201 ~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~--l~-~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 201 VGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEI----GGLTSLNHLDLVYNN--LT-GPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred cCc-CChHHcCcCCccEEECcCCccCCcCChhH----hcCCCCCEEECcCce--ec-cccChhHhCCCCCCEEECcCCee
Confidence 211 22233355666666666655443222111 234555555555442 11 11222334555555555555432
Q ss_pred hHHHHHHHhhCCCCeeeccc
Q 008051 232 LEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 232 ~~~l~~~~~~~~~L~~L~l~ 251 (579)
...++..+..+++|+.|++.
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred eccCchhHhhccCcCEEECc
Confidence 22233334445555555544
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.84 E-value=3.3e-21 Score=175.38 Aligned_cols=252 Identities=24% Similarity=0.389 Sum_probs=147.5
Q ss_pred CccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcCCcCcEEeccCc--cChHHHHHHhccCCCCceEEEecC
Q 008051 280 GLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHCPLLKRLWVLDT--VEDRGLEAVGSSCPLLEELRVFPA 356 (579)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~~~~~L~~L~l~~~ 356 (579)
+...+....+..+...||++++|++.+|. +++..+..+...|++|+.|.+..| .++..++.+..+|++|++|++++|
T Consensus 147 G~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 147 GCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred ccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence 44555555566666666666666666666 666666666666666666666553 445555556666666666666666
Q ss_pred CCCcchhcccchhHHHHHHHcCCCcchhh---------------------------hhcCcCCCHHHHHHHHHhCCCCce
Q 008051 357 DPFDEEITYGVTEAGFLAVSHGCPRLQYV---------------------------LYFCQAMTNAAVATIVRNCPNFTC 409 (579)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L---------------------------~~~~~~~~~~~l~~l~~~~~~L~~ 409 (579)
+. +++.++..+.++|..++.+ ..+|..++|..+..+...|..|+.
T Consensus 227 ~q--------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 227 PQ--------ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred ch--------hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 53 4444444444444444443 234555555555555555555555
Q ss_pred EEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc--ccChHHHHHHHhcccCcCeeeccccC-CChHHHHHHHh
Q 008051 410 FRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG--LLTDLTFEYIGQYAKNLELLSVAFAG-SSDWGMQCVLR 486 (579)
Q Consensus 410 L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~ 486 (579)
|..++ |..++ |..+.++..++++|+.|.+++ .++|.++..+.++++.|+.+++..|. ++|..+..+..
T Consensus 299 l~~s~-----~t~~~----d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 299 LCYSS-----CTDIT----DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hcccC-----CCCCc----hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 55554 33355 555566666666666666666 36666666666666667766666666 45555666666
Q ss_pred CCCcCcEEEecCC-CCCHHHHHHHH---hcCCCCcEEEecccc-cChhHHHHHhhcCCCce-EEEeccc
Q 008051 487 GCPKLRKFEIRDC-PFGDAALLSGL---DKCESMRSLWMSACN-VTMDGCKLLASKKPRLN-VEVIKEA 549 (579)
Q Consensus 487 ~~~~L~~L~l~~~-~~~~~~~~~~l---~~~~~L~~L~l~~~~-i~~~~~~~l~~~~p~l~-~~~~~~~ 549 (579)
+|+.|++|.++.| .++|+++..+- .....|+.+.+.+|+ ++++.+..+. .+|+++ |+.++-.
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechh
Confidence 6667777776666 45665442221 344566666667776 4555554443 566664 5555544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.9e-19 Score=170.48 Aligned_cols=343 Identities=16% Similarity=0.162 Sum_probs=150.8
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+..+.|+++++.+++.++..+. ++|+|+.+++.++ .++. ++.+.....+|+.|+|.+|.|+....+.+. .++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~----~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKN-ELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELS----ALP 149 (873)
T ss_pred cceeeeeccccccccCcHHHHh-cCCcceeeeeccc-hhhh--cccccccccceeEEeeeccccccccHHHHH----hHh
Confidence 4455677777766666555555 6677777777665 3332 444444455666666666665555544443 334
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHH-HHHhhCCCCeeecccccccccChhhHHHHHHHHhc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQ-KLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNK 271 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 271 (579)
.|+.|+++.+. ++.-... .+..-.++++|++.++. +..+. .-+..+.+|..|.+...
T Consensus 150 alrslDLSrN~--is~i~~~-sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN------------------ 207 (873)
T KOG4194|consen 150 ALRSLDLSRNL--ISEIPKP-SFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN------------------ 207 (873)
T ss_pred hhhhhhhhhch--hhcccCC-CCCCCCCceEEeecccc-ccccccccccccchheeeecccC------------------
Confidence 56666665431 1111000 01223456666666554 11111 01111122222222110
Q ss_pred CcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc----cChHHHHHHhccCCC
Q 008051 272 CKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT----VEDRGLEAVGSSCPL 347 (579)
Q Consensus 272 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~l~~~~~~~~~ 347 (579)
.++.- -....+.++.|+.|++..|.+...... .++.+++|+.|.+..+ ..|..+ ..|.+
T Consensus 208 -----------rittL-p~r~Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~nlklqrN~I~kL~DG~F----y~l~k 270 (873)
T KOG4194|consen 208 -----------RITTL-PQRSFKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQNLKLQRNDISKLDDGAF----YGLEK 270 (873)
T ss_pred -----------ccccc-CHHHhhhcchhhhhhccccceeeehhh-hhcCchhhhhhhhhhcCcccccCcce----eeecc
Confidence 01100 011223455566666655553222111 2345556666655432 122211 23455
Q ss_pred CceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCc
Q 008051 348 LEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEP 427 (579)
Q Consensus 348 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~ 427 (579)
+++|++... . +....-..+ -++..|+.|+++.+.+......... .+++|+.|+|+++. ++.++
T Consensus 271 me~l~L~~N--------~-l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~------i~~l~ 333 (873)
T KOG4194|consen 271 MEHLNLETN--------R-LQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNR------ITRLD 333 (873)
T ss_pred cceeecccc--------h-hhhhhcccc-cccchhhhhccchhhhheeecchhh-hcccceeEeccccc------cccCC
Confidence 666666521 1 111111111 1245555555554444333222222 45666666666443 33221
Q ss_pred cchHHHHHHhcCcccceeecccccChHHHHHHHhcccCcCeeeccccCC--ChHHHHHHHhCCCcCcEEEecCCCCCHHH
Q 008051 428 MDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGS--SDWGMQCVLRGCPKLRKFEIRDCPFGDAA 505 (579)
Q Consensus 428 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 505 (579)
+..+ ..+..|++|.++++--+.-.......+.+|++|+|++|.+ .-+.....+.++++|++|.+.||++...
T Consensus 334 -~~sf----~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I- 407 (873)
T KOG4194|consen 334 -EGSF----RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI- 407 (873)
T ss_pred -hhHH----HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-
Confidence 1111 1234566666644211111111223445666666666653 1111122334466666666666655433
Q ss_pred HHHHHhcCCCCcEEEecccc
Q 008051 506 LLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 506 ~~~~l~~~~~L~~L~l~~~~ 525 (579)
....+..++.|+.|+|.+|.
T Consensus 408 ~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccCcccceecCCCCc
Confidence 22445556666666666665
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=8.9e-16 Score=148.43 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=41.4
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCC----CcCcEEEecCCCCCHHHH---HHHHhcCCCCcEEEecccccChhHHHHH
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGC----PKLRKFEIRDCPFGDAAL---LSGLDKCESMRSLWMSACNVTMDGCKLL 534 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~l 534 (579)
.+++|+.|++++|.+++.++..++..+ +.|++|++++|.+++.+. ...+..+++|+.+++++|.+++++...+
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 345566666666666555555444442 466666666666653322 2333444566666666666666665555
Q ss_pred hh
Q 008051 535 AS 536 (579)
Q Consensus 535 ~~ 536 (579)
.+
T Consensus 299 ~~ 300 (319)
T cd00116 299 AE 300 (319)
T ss_pred HH
Confidence 54
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=3e-18 Score=162.45 Aligned_cols=132 Identities=19% Similarity=0.248 Sum_probs=90.7
Q ss_pred HhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccc
Q 008051 109 ADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFP 188 (579)
Q Consensus 109 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~ 188 (579)
....++|+++++.++.++. +..+..-..+|+.|+|.++ .++...-..+ +..+.|++|+|+.|.|+......+ +
T Consensus 98 f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L-~~l~alrslDLSrN~is~i~~~sf---p 170 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEEL-SALPALRSLDLSRNLISEIPKPSF---P 170 (873)
T ss_pred HhcCCcceeeeeccchhhh--cccccccccceeEEeeecc-ccccccHHHH-HhHhhhhhhhhhhchhhcccCCCC---C
Confidence 3578999999999887654 3334434568999999987 5554333333 368899999999998776553222 2
Q ss_pred ccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHH-HHHhhCCCCeeecccc
Q 008051 189 ESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQ-KLLVLAPQLVDLGTGS 252 (579)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~ 252 (579)
.-.++++|+++++. |+.-.... +..+.+|..|.++.+. +..++ +.+.++++|+.|++..
T Consensus 171 -~~~ni~~L~La~N~--It~l~~~~-F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 171 -AKVNIKKLNLASNR--ITTLETGH-FDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred -CCCCceEEeecccc--cccccccc-ccccchheeeecccCc-ccccCHHHhhhcchhhhhhccc
Confidence 34689999999874 44433333 3556689999998887 44444 4667788888887753
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=1.4e-14 Score=140.18 Aligned_cols=214 Identities=22% Similarity=0.264 Sum_probs=150.7
Q ss_pred hhcCCCCCeeeeccccCCcH---HHHHHHHcCCcCcEEeccCc-cChHHHHHHh---ccC-CCCceEEEecCCCCcchhc
Q 008051 293 SPVCANLTFLNLSYATLGSS---ELVKLLMHCPLLKRLWVLDT-VEDRGLEAVG---SSC-PLLEELRVFPADPFDEEIT 364 (579)
Q Consensus 293 ~~~~~~L~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~---~~~-~~L~~L~l~~~~~~~~~~~ 364 (579)
...+++|++|++++|.+... .+..+... ++|+.|+++++ +.+.++..+. ..+ ++|+.|+++++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~------- 148 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR------- 148 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-------
Confidence 33578999999999986532 23333344 66999999875 5544444332 344 889999999764
Q ss_pred ccchhH---HHHHHHcCCCcchhhhhcCcCCCHHHHHHHHH---hCCCCceEEeeccCCCCCCccCCCccchH---HHHH
Q 008051 365 YGVTEA---GFLAVSHGCPRLQYVLYFCQAMTNAAVATIVR---NCPNFTCFRLCIMNPGQPDYVTNEPMDEA---FGAV 435 (579)
Q Consensus 365 ~~~~~~---~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~i~~~~~~~~---~~~~ 435 (579)
++.. .+......+++|++|.+..+.+++..+..+.. .+++|+.|+++++. ++ +.+ +...
T Consensus 149 --l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------i~----~~~~~~l~~~ 216 (319)
T cd00116 149 --LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG------LT----DEGASALAET 216 (319)
T ss_pred --CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc------cC----hHHHHHHHHH
Confidence 4433 23334455788999988888888777666554 34599999998764 33 233 3344
Q ss_pred HhcCcccceeeccc-ccChHHHHHHHhcc----cCcCeeeccccCCChHHHHHH---HhCCCcCcEEEecCCCCCHHHHH
Q 008051 436 VRTCTNLQRLSLSG-LLTDLTFEYIGQYA----KNLELLSVAFAGSSDWGMQCV---LRGCPKLRKFEIRDCPFGDAALL 507 (579)
Q Consensus 436 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~ 507 (579)
+..+++|+.|++++ .+++.++..+...+ +.|+.|++++|.+++.+...+ +..+++|+++++++|.+++.+..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 55678999999998 57887777766654 799999999999986666544 34467899999999999876443
Q ss_pred ---HHHhcC-CCCcEEEeccccc
Q 008051 508 ---SGLDKC-ESMRSLWMSACNV 526 (579)
Q Consensus 508 ---~~l~~~-~~L~~L~l~~~~i 526 (579)
..+... +.|+.+++.++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 333444 6899999988763
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=2.3e-17 Score=157.91 Aligned_cols=240 Identities=17% Similarity=0.106 Sum_probs=144.1
Q ss_pred CCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHH
Q 008051 296 CANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAV 375 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 375 (579)
+..|-.|+++.|.+ +.+..-...+.+|++|.++++.-...-..-...+..|+.|++++..- +-..+..-
T Consensus 149 LtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR---------Tl~N~Pts 217 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR---------TLDNIPTS 217 (1255)
T ss_pred hHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc---------hhhcCCCc
Confidence 34455666666653 22222334556677777766422211111112344566666663321 11111111
Q ss_pred HcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHH
Q 008051 376 SHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLT 455 (579)
Q Consensus 376 ~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 455 (579)
...+.+|..+++++++++.- ...+. .+++|+.|+|+++. |+.+.. -.....+|++|+++.+ .-..
T Consensus 218 ld~l~NL~dvDlS~N~Lp~v-Pecly-~l~~LrrLNLS~N~------iteL~~------~~~~W~~lEtLNlSrN-QLt~ 282 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLPIV-PECLY-KLRNLRRLNLSGNK------ITELNM------TEGEWENLETLNLSRN-QLTV 282 (1255)
T ss_pred hhhhhhhhhccccccCCCcc-hHHHh-hhhhhheeccCcCc------eeeeec------cHHHHhhhhhhccccc-hhcc
Confidence 12245666667777665421 22232 56789999998764 442211 1234578999999773 1112
Q ss_pred HHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc-cChhHHHHH
Q 008051 456 FEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN-VTMDGCKLL 534 (579)
Q Consensus 456 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~l 534 (579)
++...-.+++|+.|.+.+|.++-+|+.+-+..+.+|+.+...+|.+.- +++.+.+|.+|++|.|..|. ||.+..-+
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl--VPEglcRC~kL~kL~L~~NrLiTLPeaIH- 359 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL--VPEGLCRCVKLQKLKLDHNRLITLPEAIH- 359 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc--CchhhhhhHHHHHhcccccceeechhhhh-
Confidence 333334568899999999999888988888889999999999997754 67889999999999999999 77654322
Q ss_pred hhcCCCceEEEeccc-----cccccccceeEEEEeec
Q 008051 535 ASKKPRLNVEVIKEA-----ESDDNQADKVYVYRTVA 566 (579)
Q Consensus 535 ~~~~p~l~~~~~~~~-----~~~~~~~~~~~~~~~~~ 566 (579)
-+|.+++.-++.+ |+.|.++.+...|+-|+
T Consensus 360 --lL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 360 --LLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred --hcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 3577887777777 33444444444444444
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.54 E-value=1.3e-13 Score=141.79 Aligned_cols=284 Identities=27% Similarity=0.425 Sum_probs=182.3
Q ss_pred cCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHH--HHHHHhhCCCCeeecccccccccChhhHHHHHH
Q 008051 190 SFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQ--LQKLLVLAPQLVDLGTGSFSQELTDDQRAELES 267 (579)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 267 (579)
....++.++...............+...++.|+.+.+.++..+.+ +..+...++.|+.|+++.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------- 228 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLI---------- 228 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccc----------
Confidence 455666666665554567777777777789999999998875554 66788888888888776421000
Q ss_pred HHhcCcccccccCccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcCCcCcEEeccCc--cChHHHHHHhcc
Q 008051 268 AFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHCPLLKRLWVLDT--VEDRGLEAVGSS 344 (579)
Q Consensus 268 ~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~~ 344 (579)
.........+...+++|+.++++++. +++..+..+...|++|+.|.+.++ +++.++..+...
T Consensus 229 ---------------~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 229 ---------------TLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred ---------------ccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 01111122355677889999999988 888888888888999999987765 488888888888
Q ss_pred CCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhh-cCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCcc
Q 008051 345 CPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLY-FCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYV 423 (579)
Q Consensus 345 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i 423 (579)
|++|++|++++|.. +++.++..+..+|++|+.|.. .... |+.++.+.+.++.. .
T Consensus 294 ~~~L~~L~l~~c~~--------~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~-----~ 348 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG--------LTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLT-----L 348 (482)
T ss_pred cCcccEEeeecCcc--------chHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhc-----c
Confidence 99999999997753 777777777777888887632 2111 34444444433211 1
Q ss_pred CCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCC-CC
Q 008051 424 TNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDC-PF 501 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~ 501 (579)
.. +.........|++|+.+.+..+ .++.+...+...|+.| + .++......+.+++.|+++.| ..
T Consensus 349 ~~---d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l----------~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 349 TS---DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL----------T-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred Cc---hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc----------c-hHHHHHhccCCccceEecccCccc
Confidence 10 1233344556677776666542 3333333333344433 3 333333344445788999998 45
Q ss_pred CHHHHHHHHhcCCCCcEEEecccc-cChhHHHHHhhc
Q 008051 502 GDAALLSGLDKCESMRSLWMSACN-VTMDGCKLLASK 537 (579)
Q Consensus 502 ~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~l~~~ 537 (579)
++..+......+..+..+++.+|. ++..+...+...
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 665554443447888999999998 777777655543
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.6e-14 Score=123.40 Aligned_cols=204 Identities=19% Similarity=0.169 Sum_probs=143.8
Q ss_pred CCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHH
Q 008051 297 ANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAV 375 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 375 (579)
+.|++++++...++...+.-++..|++|+.|.+.+. .+|.....++. -.+|+.|+++.|. |++..++..+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~s--------G~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCS--------GFTENALQLL 255 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeecccccc--------ccchhHHHHH
Confidence 468999999988999999999999999999999875 55655556654 4679999999664 5888888888
Q ss_pred HcCCCcchhhhhcCcCCCHHHHHHHH-HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChH
Q 008051 376 SHGCPRLQYVLYFCQAMTNAAVATIV-RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDL 454 (579)
Q Consensus 376 ~~~~~~L~~L~~~~~~~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 454 (579)
.++|..|..|.+.......+.+..+. .--++|+.|+++++.. ++.+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--------------------------------nl~~s 303 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--------------------------------NLQKS 303 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh--------------------------------hhhhh
Confidence 88888888885554444333333332 2233444444443221 23444
Q ss_pred HHHHHHhcccCcCeeeccccC-CChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHH
Q 008051 455 TFEYIGQYAKNLELLSVAFAG-SSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKL 533 (579)
Q Consensus 455 ~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 533 (579)
.+..+.+.||+|..|+++.|. +++ ++...+..++.|++|.++.|...+....-.+..-|+|.+|++.||- ++...+.
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v-sdt~mel 381 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV-SDTTMEL 381 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc-CchHHHH
Confidence 566677788888888888886 566 4444556688999999999954333233344677899999999885 6777777
Q ss_pred HhhcCCCceE
Q 008051 534 LASKKPRLNV 543 (579)
Q Consensus 534 l~~~~p~l~~ 543 (579)
+.+.+|+++|
T Consensus 382 ~~e~~~~lki 391 (419)
T KOG2120|consen 382 LKEMLSHLKI 391 (419)
T ss_pred HHHhCccccc
Confidence 8888998865
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.43 E-value=4.6e-12 Score=113.82 Aligned_cols=221 Identities=20% Similarity=0.241 Sum_probs=136.9
Q ss_pred hcCCCCCeeeeccccCCc---HHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchh
Q 008051 294 PVCANLTFLNLSYATLGS---SELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTE 369 (579)
Q Consensus 294 ~~~~~L~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 369 (579)
..+|.|++++||+|-+.. +.+..++.+|..|+.|.+.+| ....+-..+.. .|.+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~----------------- 148 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA----------------- 148 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH-----------------
Confidence 356677888888776443 344556666677777776654 33322222221 011111
Q ss_pred HHHHHHHcCCCcchhhhhcCcCCCH---HHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceee
Q 008051 370 AGFLAVSHGCPRLQYVLYFCQAMTN---AAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLS 446 (579)
Q Consensus 370 ~~~~~l~~~~~~L~~L~~~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~ 446 (579)
....+..-++|+.+..+.+.+-+ ..+....+.+|.|+.+++..++ |...- ...+..-+..|+.|+.|+
T Consensus 149 --~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~------I~~eG-~~al~eal~~~~~LevLd 219 (382)
T KOG1909|consen 149 --VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG------IRPEG-VTALAEALEHCPHLEVLD 219 (382)
T ss_pred --HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc------ccCch-hHHHHHHHHhCCcceeee
Confidence 11111223556666555444433 3344455677888888887654 33100 122333456788999999
Q ss_pred cccc-cChHHHHHHH---hcccCcCeeeccccCCChHHHHHHHhC----CCcCcEEEecCCCCCHHHHHH---HHhcCCC
Q 008051 447 LSGL-LTDLTFEYIG---QYAKNLELLSVAFAGSSDWGMQCVLRG----CPKLRKFEIRDCPFGDAALLS---GLDKCES 515 (579)
Q Consensus 447 l~~~-~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~---~l~~~~~ 515 (579)
+.++ ++..+-..++ ..+|.|+.|+++.|.+.+.|..++... .|+|+.|.+.+|.++.++... .+..-|.
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 9773 5555444443 356789999999999876666555443 789999999999988766532 3355789
Q ss_pred CcEEEeccccc--ChhHHHHHhhcCCCceE
Q 008051 516 MRSLWMSACNV--TMDGCKLLASKKPRLNV 543 (579)
Q Consensus 516 L~~L~l~~~~i--~~~~~~~l~~~~p~l~~ 543 (579)
|++|+|++|.+ .+++++.++..++...+
T Consensus 300 L~kLnLngN~l~e~de~i~ei~~~~~~~~~ 329 (382)
T KOG1909|consen 300 LEKLNLNGNRLGEKDEGIDEIASKFDTAHV 329 (382)
T ss_pred hHHhcCCcccccccchhHHHHHHhcccccc
Confidence 99999999998 77899999888866544
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.43 E-value=1.6e-12 Score=116.71 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=47.9
Q ss_pred HHHHHhcCCCCCeeeecCcccChHHHHHHHhhCC---CCcEEeecCC--CCCChHH------HHHHHhhCCCCCeEeccC
Q 008051 105 LVAFADRYPSLEELRLKRMSVSDESLEFLAVSFP---NFKVLSLSSC--DGFSTDG------LAAIATNCKNLTELDIQE 173 (579)
Q Consensus 105 l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~---~L~~L~l~~~--~~~~~~~------l~~~~~~~~~L~~L~l~~ 173 (579)
+.........++.|+|+++.+..+..+.++..+. .|+..+++.- ....+.. +...+..||+|++|+||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4555567788999999999888877777665554 4555555532 0111111 223334567777777777
Q ss_pred CCcccccccccc
Q 008051 174 NGIEDISGSWLS 185 (579)
Q Consensus 174 ~~i~~~~~~~l~ 185 (579)
|-+...+...+.
T Consensus 102 NA~G~~g~~~l~ 113 (382)
T KOG1909|consen 102 NAFGPKGIRGLE 113 (382)
T ss_pred cccCccchHHHH
Confidence 765544433333
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.40 E-value=1e-12 Score=135.18 Aligned_cols=394 Identities=27% Similarity=0.373 Sum_probs=207.1
Q ss_pred CCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhhcccceEEeccccccCh---HHHHhhCCCceEEEcCCCCc
Q 008051 10 QNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSP---EILTRRFPNILSVTLKGKPR 86 (579)
Q Consensus 10 ~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~L~l~~~~~ 86 (579)
..+.....|++....++.... ..+......+++.|..........+.......... ......+.....+.......
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (482)
T KOG1947|consen 41 RLRFTLLLPDELLADLLLKLV-VLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSK 119 (482)
T ss_pred ceeeeeccccchhhhcccccc-cccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCcc
Confidence 335677788888888888888 67888888999999988543321111111110111 11222222222211111111
Q ss_pred cccCC---CCC------------CCCCCCchHHHHHHHhcCCCCCeeeecCc--ccChHHHHHHHhhCCCCcEEeecCCC
Q 008051 87 FSDFN---LVP------------QDWGADIHPWLVAFADRYPSLEELRLKRM--SVSDESLEFLAVSFPNFKVLSLSSCD 149 (579)
Q Consensus 87 ~~~~~---~~~------------~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~~~ 149 (579)
....+ ..+ ....................++.+++... .........+...++.|+.|.+.+|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 199 (482)
T KOG1947|consen 120 VSTLSLLSIFSLLVKLRNLLLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS 199 (482)
T ss_pred ccccchhhhhhhhhhcchhhccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc
Confidence 11000 000 00000011122222233334444444332 24444455555456667777776666
Q ss_pred CCChHHHHHHHhhCCCCCeEeccCC-CcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecC
Q 008051 150 GFSTDGLAAIATNCKNLTELDIQEN-GIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNK 228 (579)
Q Consensus 150 ~~~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 228 (579)
.+++.++..+...+++|++|+++++ .... ........+...+++|+.|++..
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------------------------~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLIT---------------------------LSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccc---------------------------cchhHhhhhhhhcCCcCccchhh
Confidence 6666555556666666666666653 1000 11112222445566666666665
Q ss_pred ccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeecccc
Q 008051 229 SISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT 308 (579)
Q Consensus 229 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 308 (579)
+.. +++..+..+...|++|+.|.+.+|.
T Consensus 253 ~~~----------------------------------------------------isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 253 CGL----------------------------------------------------VTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hhc----------------------------------------------------cCchhHHHHHhhCCCcceEccCCCC
Confidence 541 2233344455556666666666666
Q ss_pred -CCcHHHHHHHHcCCcCcEEeccCc--cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhh
Q 008051 309 -LGSSELVKLLMHCPLLKRLWVLDT--VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYV 385 (579)
Q Consensus 309 -~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 385 (579)
+++.++..+...|++|+.|+++.+ +.+.++..+...|++|+.|.+..+. +|+.++.+
T Consensus 281 ~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~--------------------~c~~l~~~ 340 (482)
T KOG1947|consen 281 NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN--------------------GCPSLTDL 340 (482)
T ss_pred ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC--------------------CCccHHHH
Confidence 677777777777777777777654 3466666666667777776665321 04444444
Q ss_pred hh-cCcCCC-HHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHHhcc
Q 008051 386 LY-FCQAMT-NAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYA 463 (579)
Q Consensus 386 ~~-~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 463 (579)
.+ .+.... +.........|++++.+.+.++. +. +.+......+|+.|. ..+ ......+
T Consensus 341 ~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~~~l~gc~~l~-~~l---------~~~~~~~ 400 (482)
T KOG1947|consen 341 SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG------IS----DLGLELSLRGCPNLT-ESL---------ELRLCRS 400 (482)
T ss_pred HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh------cc----CcchHHHhcCCcccc-hHH---------HHHhccC
Confidence 22 222223 35555566788888888887643 33 445455667777773 222 1112223
Q ss_pred cCcCeeeccccC-CChHHHHHHHhCCCcCcEEEecCCC-CCHHHHHHHHhcCCCCcEEEeccc
Q 008051 464 KNLELLSVAFAG-SSDWGMQCVLRGCPKLRKFEIRDCP-FGDAALLSGLDKCESMRSLWMSAC 524 (579)
Q Consensus 464 ~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 524 (579)
..++.|++..|. .++..+......+.+++.+++.+|. ++........... .........+
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 462 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASNC-DLISLDVGLK 462 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhccc-cccccccccc
Confidence 348888888887 6777777665557888889999984 4444333333333 4444444333
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.39 E-value=1.2e-12 Score=145.98 Aligned_cols=312 Identities=17% Similarity=0.169 Sum_probs=163.2
Q ss_pred CCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhC
Q 008051 139 NFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRC 218 (579)
Q Consensus 139 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 218 (579)
+|+.|++.++. +.. ++..+ ...+|++|++.++.+.... .-...+++|+.|+++++.. ...++. +..+
T Consensus 590 ~Lr~L~~~~~~-l~~--lP~~f-~~~~L~~L~L~~s~l~~L~-----~~~~~l~~Lk~L~Ls~~~~---l~~ip~-ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYP-LRC--MPSNF-RPENLVKLQMQGSKLEKLW-----DGVHSLTGLRNIDLRGSKN---LKEIPD-LSMA 656 (1153)
T ss_pred ccEEEEecCCC-CCC--CCCcC-CccCCcEEECcCccccccc-----cccccCCCCCEEECCCCCC---cCcCCc-cccC
Confidence 46666666542 211 22222 3466777777666544321 1122456777777765431 111222 3456
Q ss_pred CCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCC
Q 008051 219 KSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCAN 298 (579)
Q Consensus 219 ~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~ 298 (579)
++|+.|++.+|.....++..+..+++|+.|.+..+ ..++.+. ... .+++
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c-------------------~~L~~Lp-----------~~i-~l~s 705 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC-------------------ENLEILP-----------TGI-NLKS 705 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCC-------------------CCcCccC-----------CcC-CCCC
Confidence 77777777777666666666666777777765432 2222221 000 3566
Q ss_pred CCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchh--HHHH-HH
Q 008051 299 LTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTE--AGFL-AV 375 (579)
Q Consensus 299 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~-~l 375 (579)
|+.|++++|..-. .+....++|+.|++.++... .+... ..+++|+.|.+.++.... +.. ..+. ..
T Consensus 706 L~~L~Lsgc~~L~----~~p~~~~nL~~L~L~~n~i~-~lP~~-~~l~~L~~L~l~~~~~~~------l~~~~~~l~~~~ 773 (1153)
T PLN03210 706 LYRLNLSGCSRLK----SFPDISTNISWLDLDETAIE-EFPSN-LRLENLDELILCEMKSEK------LWERVQPLTPLM 773 (1153)
T ss_pred CCEEeCCCCCCcc----ccccccCCcCeeecCCCccc-ccccc-ccccccccccccccchhh------ccccccccchhh
Confidence 7777777765110 01112356777776653211 11111 134566666665432100 000 0000 01
Q ss_pred HcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHH
Q 008051 376 SHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLT 455 (579)
Q Consensus 376 ~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 455 (579)
...+++|+.|.+..+.........+ ..+++|+.|++.+| +.+..+|... .+++|+.|+++++-.-..
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C-----~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENC-----INLETLPTGI-------NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCC-----CCcCeeCCCC-------CccccCEEECCCCCcccc
Confidence 1224677777554332211112222 36788888888764 3455443221 467888888887422111
Q ss_pred HHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 456 FEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 456 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
+ ....++|+.|+++++.++. +...+..+++|+.|++++|+.... ++..+..+++|+.+++++|.
T Consensus 841 ~---p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 F---PDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred c---cccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 1 1234678888888888753 333456788899999988843222 44455677888888888886
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.22 E-value=5.4e-12 Score=127.16 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=90.7
Q ss_pred cchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHH
Q 008051 381 RLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYI 459 (579)
Q Consensus 381 ~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~ 459 (579)
.|+.|.+..+.+++..+..+. ++++|+.|+|+++. +..+| + ....+++.|++|+++|+ +. .+..-
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNr------L~~fp-a----s~~~kle~LeeL~LSGNkL~--~Lp~t 425 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNR------LNSFP-A----SKLRKLEELEELNLSGNKLT--TLPDT 425 (1081)
T ss_pred HHHHHHHhcCcccccchhhhc-cccceeeeeecccc------cccCC-H----HHHhchHHhHHHhcccchhh--hhhHH
Confidence 456666677778888777776 78999999999764 44333 2 33456788999999884 22 23333
Q ss_pred HhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 460 GQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 460 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
...++.|++|...+|.+.. +..+ ..++.|+.+|++.|.++.-.+++.+.. ++|++|+++||.
T Consensus 426 va~~~~L~tL~ahsN~l~~--fPe~-~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLLS--FPEL-AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHhhhhhHHHhhcCCceee--chhh-hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 4567888888888777642 2233 457899999999998887766655544 899999999998
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.19 E-value=8.3e-13 Score=127.17 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=33.8
Q ss_pred cCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 464 KNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 464 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
.+|++|+++.|.++. +...+..+++|++|-+.+|.++-+++++.+..+.+|+.+...+|.
T Consensus 268 ~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred hhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 345555665555442 222223355666666666666655566666666666666666665
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=9.2e-11 Score=131.06 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=69.0
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCC-cccccccccccccccCCccceeecccccCCCCHHHHHHHH
Q 008051 137 FPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENG-IEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLV 215 (579)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~ 215 (579)
..+|+.|++.++ .+.. ++.-...+++|+.|+++++. +.... . ...+++|+.|+++++. ....++..+
T Consensus 610 ~~~L~~L~L~~s-~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~-ls~l~~Le~L~L~~c~---~L~~lp~si 677 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEK--LWDGVHSLTGLRNIDLRGSKNLKEIP-----D-LSMATNLETLKLSDCS---SLVELPSSI 677 (1153)
T ss_pred ccCCcEEECcCc-cccc--cccccccCCCCCEEECCCCCCcCcCC-----c-cccCCcccEEEecCCC---Cccccchhh
Confidence 358899999887 4443 43334578899999998764 22211 1 2256789999998774 334455556
Q ss_pred HhCCCCCeeEecCccChHHHHHHHhhCCCCeeeccccc
Q 008051 216 SRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSF 253 (579)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 253 (579)
.++++|+.|++++|..+..++..+ .+++|+.|.+.++
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 788899999999887665555433 5677777766543
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-11 Score=112.25 Aligned_cols=187 Identities=18% Similarity=0.131 Sum_probs=108.5
Q ss_pred hhhhcCCCCCeeeecccc-CCcHHHHHHHHcCCcCcEEeccCc----cChHHHHHHhccCCCCceEEEecCCCCcchhcc
Q 008051 291 ALSPVCANLTFLNLSYAT-LGSSELVKLLMHCPLLKRLWVLDT----VEDRGLEAVGSSCPLLEELRVFPADPFDEEITY 365 (579)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~----~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 365 (579)
...+.|++++.|+++.|- ..+..+..+++.+|+|+.|+++.+ +.++... ...++|+.|.++.|
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~C--------- 207 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSC--------- 207 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhhhhhheEEeccC---------
Confidence 456789999999999998 677888889999999999999863 2232222 24678999999977
Q ss_pred cchhHHHHHHHcCCCcchhhhhcCcC-CCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccce
Q 008051 366 GVTEAGFLAVSHGCPRLQYVLYFCQA-MTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQR 444 (579)
Q Consensus 366 ~~~~~~~~~l~~~~~~L~~L~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ 444 (579)
|++...+..++..||+|+.|.+..+. +..... -.+.+..|+.|+|+++.. ++ .........+|.|..
T Consensus 208 Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~l-----i~-----~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 208 GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNL-----ID-----FDQGYKVGTLPGLNQ 275 (505)
T ss_pred CCCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcc-----cc-----cccccccccccchhh
Confidence 48888888888888999888666553 111100 012234566666665432 21 111112234555666
Q ss_pred eecccc------cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCC
Q 008051 445 LSLSGL------LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPF 501 (579)
Q Consensus 445 L~l~~~------~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 501 (579)
|.++.. ..|.........+++|+.|++..|+|.+-....-+..+++|+.|.+..+.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 655431 111111222334566666666666653311111113345555555555544
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-10 Score=108.12 Aligned_cols=217 Identities=16% Similarity=0.137 Sum_probs=126.8
Q ss_pred hhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCcc--ChHHHHHHhccCCCCceEEEecCCCCcchhcccchhH
Q 008051 293 SPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTV--EDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEA 370 (579)
Q Consensus 293 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 370 (579)
.+.+.+|+.+.+.++.+...........|++++.|+++.+. ....+..++..+|+|+.|+++..... +. .+..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~----~~-~~s~ 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS----NF-ISSN 191 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc----CC-cccc
Confidence 34566777888887776555544566788888888888752 33455566777888888888733210 00 1110
Q ss_pred HHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-
Q 008051 371 GFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG- 449 (579)
Q Consensus 371 ~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~- 449 (579)
.. ...+.|+.|.+....++...+..+...||+|+.|.+..+.. +.. ... -...+..|++|+|++
T Consensus 192 -~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~-----~~~----~~~--~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 192 -TT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI-----ILI----KAT--STKILQTLQELDLSNN 256 (505)
T ss_pred -ch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc-----cce----ecc--hhhhhhHHhhccccCC
Confidence 00 02566777766666677667777777788888877776421 110 000 011235677777766
Q ss_pred ccChHHHHHHHhcccCcCeeeccccCCChHHHH-----HHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccc
Q 008051 450 LLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQ-----CVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSAC 524 (579)
Q Consensus 450 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-----~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 524 (579)
.+-+-........+|.|+.|+++.|++++.... .-...+++|+.|++..|++.+-.-..-+..+++|+.|.+..|
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 222222223335677777777777776433222 223446777777777777766444444555667777777777
Q ss_pred ccChh
Q 008051 525 NVTMD 529 (579)
Q Consensus 525 ~i~~~ 529 (579)
.++.+
T Consensus 337 ~ln~e 341 (505)
T KOG3207|consen 337 YLNKE 341 (505)
T ss_pred ccccc
Confidence 76543
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=2.3e-11 Score=122.75 Aligned_cols=353 Identities=17% Similarity=0.157 Sum_probs=180.0
Q ss_pred CCeeeecCcccChHHHHHHHhhCCCCcE-EeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCc
Q 008051 115 LEELRLKRMSVSDESLEFLAVSFPNFKV-LSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTS 193 (579)
Q Consensus 115 L~~L~l~~~~i~~~~l~~l~~~~~~L~~-L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~ 193 (579)
++.+++..+.+.......+. ++++ |+|+++ .+.. .....+++|+.|....+.+. .+-...++
T Consensus 158 ik~~~l~~n~l~~~~~~~i~----~l~~~ldLr~N-~~~~----~dls~~~~l~~l~c~rn~ls--------~l~~~g~~ 220 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIY----NLTHQLDLRYN-EMEV----LDLSNLANLEVLHCERNQLS--------ELEISGPS 220 (1081)
T ss_pred chhhhhhhhhcccchhcchh----hhheeeecccc-hhhh----hhhhhccchhhhhhhhcccc--------eEEecCcc
Confidence 66666666655554433332 3444 888887 3432 12235777777776666532 22224456
Q ss_pred cceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCc
Q 008051 194 LEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCK 273 (579)
Q Consensus 194 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~ 273 (579)
|+.|..+.+. ++. ... ...-.+|+.++++.+. ...++.++..+.+|+.+...... +..+...+....
T Consensus 221 l~~L~a~~n~--l~~--~~~-~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-------l~~lp~ri~~~~ 287 (1081)
T KOG0618|consen 221 LTALYADHNP--LTT--LDV-HPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-------LVALPLRISRIT 287 (1081)
T ss_pred hheeeeccCc--cee--ecc-ccccccceeeecchhh-hhcchHHHHhcccceEecccchh-------HHhhHHHHhhhh
Confidence 6666666553 220 000 0122357777776665 55566777777777777654222 122223333334
Q ss_pred ccccccCccccccchHhhhhhcCCCCCeeeeccccCCc--HHHHHHHHcCCcCcEEeccCccChHHHHHH-hccCCCCce
Q 008051 274 NIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGS--SELVKLLMHCPLLKRLWVLDTVEDRGLEAV-GSSCPLLEE 350 (579)
Q Consensus 274 ~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~-~~~~~~L~~ 350 (579)
+|++|.... ..-..++......+.|+.|++..|.+.. +.+.+.. ...|..|..+..... .+... ....+.|+.
T Consensus 288 ~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~--~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 288 SLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL--NASLNTLNVSSNKLS-TLPSYEENNHAALQE 363 (1081)
T ss_pred hHHHHHhhh-hhhhhCCCcccccceeeeeeehhccccccchHHHhhh--hHHHHHHhhhhcccc-ccccccchhhHHHHH
Confidence 444444110 0111122233456778888888877322 1111110 001222222110000 00000 011234555
Q ss_pred EEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccch
Q 008051 351 LRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDE 430 (579)
Q Consensus 351 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~ 430 (579)
|.+. ++. +++..+.. ..+.++|+.|.+..+.+....-..+ ..++.|+.|.|+++. ++.+|
T Consensus 364 Lyla--------nN~-Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~-~kle~LeeL~LSGNk------L~~Lp--- 423 (1081)
T KOG0618|consen 364 LYLA--------NNH-LTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKL-RKLEELEELNLSGNK------LTTLP--- 423 (1081)
T ss_pred HHHh--------cCc-ccccchhh-hccccceeeeeecccccccCCHHHH-hchHHhHHHhcccch------hhhhh---
Confidence 5555 223 55544433 3346777777665554432222222 256678888888765 34332
Q ss_pred HHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHH
Q 008051 431 AFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSG 509 (579)
Q Consensus 431 ~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 509 (579)
.-+..|+.|+.|...++ +. .++.+ ..++.|+.++++.|.++...+...... |+|++|++++|.-... -.+.
T Consensus 424 ---~tva~~~~L~tL~ahsN~l~--~fPe~-~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~-d~~~ 495 (1081)
T KOG0618|consen 424 ---DTVANLGRLHTLRAHSNQLL--SFPEL-AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVF-DHKT 495 (1081)
T ss_pred ---HHHHhhhhhHHHhhcCCcee--echhh-hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccccc-chhh
Confidence 22345777888877652 22 12333 457889999999888877555554333 7999999999953221 1255
Q ss_pred HhcCCCCcEEEecccccChh
Q 008051 510 LDKCESMRSLWMSACNVTMD 529 (579)
Q Consensus 510 l~~~~~L~~L~l~~~~i~~~ 529 (579)
+..+..+..+++.-++.+++
T Consensus 496 l~~l~~l~~~~i~~~~~~d~ 515 (1081)
T KOG0618|consen 496 LKVLKSLSQMDITLNNTPDG 515 (1081)
T ss_pred hHHhhhhhheecccCCCCcc
Confidence 66677777777766654443
No 23
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=3.4e-10 Score=73.29 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=32.1
Q ss_pred cccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 14 EVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 14 ~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
|.+||+|++.+||+||+ .+|+.++++|||+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHC
Confidence 67899999999999998 8999999999999999973
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.96 E-value=4.9e-11 Score=109.09 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=76.9
Q ss_pred HHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHHh---cccCcCeeeccccCCC
Q 008051 401 VRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQ---YAKNLELLSVAFAGSS 477 (579)
Q Consensus 401 ~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~i~ 477 (579)
...+++|..|+++++- +.++|.+. .....|+.|+++.+ .+..+.. ....|+.+-.+++.+.
T Consensus 431 l~~l~kLt~L~L~NN~------Ln~LP~e~------~~lv~Lq~LnlS~N----rFr~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL------LNDLPEEM------GSLVRLQTLNLSFN----RFRMLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HHhhhcceeeecccch------hhhcchhh------hhhhhhheeccccc----ccccchHHHhhHHHHHHHHhcccccc
Confidence 3478899999998653 45444432 23456999999764 2222222 2244666666767664
Q ss_pred hHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHH
Q 008051 478 DWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGC 531 (579)
Q Consensus 478 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 531 (579)
..... -+.+..+|..|++.+|.+.. ++..+++|++|+.|.++||++..+--
T Consensus 495 ~vd~~-~l~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpfr~Pr~ 545 (565)
T KOG0472|consen 495 SVDPS-GLKNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPFRQPRH 545 (565)
T ss_pred ccChH-HhhhhhhcceeccCCCchhh--CChhhccccceeEEEecCCccCCCHH
Confidence 33322 23567999999999998765 67889999999999999999765433
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=7.1e-10 Score=115.10 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=39.1
Q ss_pred cCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHH
Q 008051 464 KNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLL 534 (579)
Q Consensus 464 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l 534 (579)
++|+.|++++|.++. +..+ ..+|+.|++++|.++. ++..+.++++|+.|++++|+++....+.+
T Consensus 402 s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 456667777666542 1111 2356677777777663 45556667777777777777766555544
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=6.3e-09 Score=108.22 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=90.0
Q ss_pred CCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHH
Q 008051 297 ANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVS 376 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 376 (579)
++|+.|++++|.+..- . .-.++|+.|.+.++.-. .+ ....++|+.|+++++. ++.. .
T Consensus 302 ~~L~~LdLS~N~L~~L--p---~lp~~L~~L~Ls~N~L~-~L---P~lp~~Lq~LdLS~N~---------Ls~L-----P 358 (788)
T PRK15387 302 PGLQELSVSDNQLASL--P---ALPSELCKLWAYNNQLT-SL---PTLPSGLQELSVSDNQ---------LASL-----P 358 (788)
T ss_pred cccceeECCCCccccC--C---CCcccccccccccCccc-cc---cccccccceEecCCCc---------cCCC-----C
Confidence 5577777776654321 0 01234566665543111 11 1112467777777432 3321 1
Q ss_pred cCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHH
Q 008051 377 HGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLT 455 (579)
Q Consensus 377 ~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~ 455 (579)
...++|+.|.+..+.++. +.....+|+.|+++++. ++.+|. ..++|+.|+++++ ++.
T Consensus 359 ~lp~~L~~L~Ls~N~L~~-----LP~l~~~L~~LdLs~N~------Lt~LP~---------l~s~L~~LdLS~N~Lss-- 416 (788)
T PRK15387 359 TLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNR------LTSLPV---------LPSELKELMVSGNRLTS-- 416 (788)
T ss_pred CCCcccceehhhcccccc-----CcccccccceEEecCCc------ccCCCC---------cccCCCEEEccCCcCCC--
Confidence 113456666555554442 11223578899998654 443331 1357999999873 332
Q ss_pred HHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHH
Q 008051 456 FEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAAL 506 (579)
Q Consensus 456 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 506 (579)
+. ....+|+.|++++|.++. +..-+.++++|+.|++++|++++..+
T Consensus 417 IP---~l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 417 LP---MLPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CC---cchhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHH
Confidence 21 123578899999998863 33334568999999999999987644
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.4e-09 Score=94.30 Aligned_cols=245 Identities=13% Similarity=0.095 Sum_probs=144.0
Q ss_pred HhhhhhcCCCCCeeeeccccC-CcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccc
Q 008051 289 FPALSPVCANLTFLNLSYATL-GSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGV 367 (579)
Q Consensus 289 l~~~~~~~~~L~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 367 (579)
...+...++.++++++.+|.+ .+..+..++.++|.|+.|+++.+.-...+........+|+.|-+.+.. +
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~---------L 133 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG---------L 133 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC---------C
Confidence 444555667777777777774 345566677777777777776543222222222223466666666431 3
Q ss_pred hhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeec
Q 008051 368 TEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSL 447 (579)
Q Consensus 368 ~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l 447 (579)
+-.....+...+|.++.|.++-+ +++.+.+... | +. . .-+.++.|+.
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N---------------~~rq~n~Dd~----c--~e------~------~s~~v~tlh~ 180 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDN---------------SLRQLNLDDN----C--IE------D------WSTEVLTLHQ 180 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccc---------------hhhhhccccc----c--cc------c------cchhhhhhhc
Confidence 33333334444444444432211 1122222110 0 00 0 1134555555
Q ss_pred ccccCh--HHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 448 SGLLTD--LTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 448 ~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
.+|... .....+.+.+|++..+-+..|++.+.....-....|.+--|+++.+++.+-.-...+..+++|..|.+.+++
T Consensus 181 ~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 181 LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 443111 123345567899999999999876555444445578888999999999887777888899999999999999
Q ss_pred cChh--H---HHHHhhcCCCceEEEecccccccccc---ceeEEEEeecCCCCCCCCCcccC
Q 008051 526 VTMD--G---CKLLASKKPRLNVEVIKEAESDDNQA---DKVYVYRTVAGPRKDAPPSVITL 579 (579)
Q Consensus 526 i~~~--~---~~~l~~~~p~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 579 (579)
+.++ | ...+.+++|+ |+++++...-+++. |..|++++++ -++.|..|.||
T Consensus 261 l~d~l~~~err~llIaRL~~--v~vLNGskIss~er~dSEr~fVRyym~--qke~p~ky~el 318 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTK--VQVLNGSKISSRERKDSERRFVRYYMS--QKELPDKYGEL 318 (418)
T ss_pred ccccccCCcceEEEEeeccc--eEEecCcccchhhhhhhHHHHHHHHhh--hhhcchhhhhH
Confidence 7553 1 2223445565 58888885544433 5566777764 67788877664
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=7.2e-07 Score=78.02 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=53.8
Q ss_pred HHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEee---cCC--CCCChHH------HHHHHhhCCCCCeEeccC
Q 008051 105 LVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSL---SSC--DGFSTDG------LAAIATNCKNLTELDIQE 173 (579)
Q Consensus 105 l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l---~~~--~~~~~~~------l~~~~~~~~~L~~L~l~~ 173 (579)
+..+. ....+++++|+++.+..+..+.++.+..+-+.|.+ +.. ....+.- +..++-.||+|+..+|+.
T Consensus 23 ~eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 23 VEELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 33333 37889999999999998888888776665554444 321 0111111 122223678888888877
Q ss_pred CCcccccccccccccccCCccceeeccc
Q 008051 174 NGIEDISGSWLSCFPESFTSLEVLNFAN 201 (579)
Q Consensus 174 ~~i~~~~~~~l~~l~~~~~~L~~L~l~~ 201 (579)
|-+.....+.+..+..+.+.|++|.+++
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeec
Confidence 7655443333333333334444444443
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=3e-08 Score=64.68 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=31.8
Q ss_pred ccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 13 SEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 13 ~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
+|.+||+|++.+||+||+ ..++.+++.|||+|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHc
Confidence 578999999999999999 9999999999999999964
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=2.5e-08 Score=84.35 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=50.8
Q ss_pred CCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHH
Q 008051 404 CPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQ 482 (579)
Q Consensus 404 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 482 (579)
+-+++.|+|.++. |+. +..+...+.+|+.|+++++ +.. +.. ...++.|+.|++++|.|++.+ .
T Consensus 18 ~~~~~~L~L~~n~------I~~------Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~-~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQ------IST------IENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSIS-E 81 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-H
T ss_pred ccccccccccccc------ccc------ccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccc-c
Confidence 3356777777654 221 1122223567888888763 332 111 234789999999999987542 1
Q ss_pred HHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh-hHHHH-HhhcCCCceEEEeccccc
Q 008051 483 CVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM-DGCKL-LASKKPRLNVEVIKEAES 551 (579)
Q Consensus 483 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~-l~~~~p~l~~~~~~~~~~ 551 (579)
.+..++|+|++|.+++|.+.+..-...+..+++|+.|++.||+++. ...+. +...+|+++ .+++...
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk--~LD~~~V 150 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK--VLDGQDV 150 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S--EETTEET
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh--eeCCEEc
Confidence 2334589999999999988664445677889999999999999865 34433 446789984 4555433
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=1.8e-06 Score=75.54 Aligned_cols=210 Identities=15% Similarity=0.157 Sum_probs=119.9
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcC---CcCcEEeccCccCh----H---HHH---HHhccCCCCceEEEecCCCCcc
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHC---PLLKRLWVLDTVED----R---GLE---AVGSSCPLLEELRVFPADPFDE 361 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~~----~---~l~---~~~~~~~~L~~L~l~~~~~~~~ 361 (579)
....++++++++|.+..+....+.... .+|+..++++.++. . .+. ...-+||+|+..+++..++..+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 467889999999998887766655444 44555555443222 1 111 1124578888888775432111
Q ss_pred hhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHH-----
Q 008051 362 EITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVV----- 436 (579)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~----- 436 (579)
....+..+.+ .-..|++|.+++|+.+ .+..--....+..+.
T Consensus 108 ------~~e~L~d~is-------------------------~~t~l~HL~l~NnGlG---p~aG~rigkal~~la~nKKa 153 (388)
T COG5238 108 ------FPEELGDLIS-------------------------SSTDLVHLKLNNNGLG---PIAGGRIGKALFHLAYNKKA 153 (388)
T ss_pred ------cchHHHHHHh-------------------------cCCCceeEEeecCCCC---ccchhHHHHHHHHHHHHhhh
Confidence 1112222222 3445555555554310 011000011111111
Q ss_pred hcCcccceeecccc-c---ChHHHHHHHhcccCcCeeeccccCCChHHHHHHHh----CCCcCcEEEecCCCCCHHH---
Q 008051 437 RTCTNLQRLSLSGL-L---TDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLR----GCPKLRKFEIRDCPFGDAA--- 505 (579)
Q Consensus 437 ~~~~~L~~L~l~~~-~---~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~--- 505 (579)
..-|.|++..+..+ + +..-.......-.+|+.+.+..|.|..+|+..++- -|.+|+.|+|.+|.++..+
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 12366777777541 1 21112222222368999999999997777665533 3889999999999776533
Q ss_pred HHHHHhcCCCCcEEEecccccChhHHHHHhhcC
Q 008051 506 LLSGLDKCESMRSLWMSACNVTMDGCKLLASKK 538 (579)
Q Consensus 506 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 538 (579)
+...+..++.|+.|.+.+|-++-+|...+...+
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 344557778899999999999988877765544
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.45 E-value=5.9e-07 Score=93.31 Aligned_cols=130 Identities=22% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHH-----------HHHHH--hhCCCCCeEeccCCCcccc
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDG-----------LAAIA--TNCKNLTELDIQENGIEDI 179 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-----------l~~~~--~~~~~L~~L~l~~~~i~~~ 179 (579)
=++..+++.+..+....++.+.+. .|++|.+.+...+.... +..++ ..-.+|++|+++|.. ..
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~--~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~--~~ 135 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQ--DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE--LF 135 (699)
T ss_pred heeEEeeccceecchhHHHHHhhc--cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc--hh
Confidence 345666666665666656655432 26777666443222111 11111 123788888888854 33
Q ss_pred cccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecc
Q 008051 180 SGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGT 250 (579)
Q Consensus 180 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 250 (579)
...|...+...+|+|++|.+++.. .....+..++.++|+|..|+++++. +..+ ..++++++|+.|.+
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSM 202 (699)
T ss_pred hccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhc
Confidence 455666777778888888888874 5556677788889999999998886 3332 34455555555533
No 33
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.39 E-value=4.2e-07 Score=57.00 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=31.2
Q ss_pred CchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 17 SVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 17 LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
||+|++..||.|++ .+|+.+++.|||+|+.++.
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhc
Confidence 79999999999999 8999999999999999963
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.36 E-value=3e-08 Score=91.26 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=33.8
Q ss_pred hcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCH
Q 008051 461 QYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGD 503 (579)
Q Consensus 461 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 503 (579)
.++.+|..|++.+|.+. .+...+.++.+|++|+++||++..
T Consensus 502 ~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCccCC
Confidence 45678999999988875 346677899999999999998864
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=7.2e-07 Score=79.09 Aligned_cols=108 Identities=18% Similarity=0.269 Sum_probs=70.9
Q ss_pred CeeeecCcccCh-HHHHHHHhhCCCCcEEeecCCCCCCh-HHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCc
Q 008051 116 EELRLKRMSVSD-ESLEFLAVSFPNFKVLSLSSCDGFST-DGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTS 193 (579)
Q Consensus 116 ~~L~l~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~ 193 (579)
+-|-+.++.+.. .+...++..+.+++.++|.++ .+++ ..+..+..++|.|+.|+++.|.+... +..++....+
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~~n 122 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPLKN 122 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccccc
Confidence 344455555443 345566666778888888877 4544 55667777888888888888865432 2233334567
Q ss_pred cceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 194 LEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 194 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
|++|-++++. .+..........+|.++.|+++.+.
T Consensus 123 l~~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 123 LRVLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred eEEEEEcCCC--CChhhhhhhhhcchhhhhhhhccch
Confidence 7777777774 6777777777777777777776653
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=8.2e-07 Score=75.20 Aligned_cols=85 Identities=31% Similarity=0.409 Sum_probs=29.7
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+.+|+.|++++|.++. ++.+. .+++|++|+++++ .++..+ ..+...+|+|++|.+++|.|.+... +..+ ..
T Consensus 40 ~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~--l~~L-~~ 111 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNNKISDLNE--LEPL-SS 111 (175)
T ss_dssp T-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS---SCCC--CGGG-GG
T ss_pred hhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCCcCCChHH--hHHH-Hc
Confidence 45677777777777664 23333 5677777777776 454421 1233357777777777777655432 2221 24
Q ss_pred CCccceeeccccc
Q 008051 191 FTSLEVLNFANVN 203 (579)
Q Consensus 191 ~~~L~~L~l~~~~ 203 (579)
+++|++|++.+++
T Consensus 112 l~~L~~L~L~~NP 124 (175)
T PF14580_consen 112 LPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TT-G
T ss_pred CCCcceeeccCCc
Confidence 5666666666553
No 37
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.27 E-value=3.1e-06 Score=88.04 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=77.6
Q ss_pred HHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccC
Q 008051 397 VATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAG 475 (579)
Q Consensus 397 l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~ 475 (579)
...++..+|+|++|.+.+.. +. .+.+..+..++|+|.+||+++ ++++- .-...+++|+.|.+.+-.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~------~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQ------FD----NDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLE 206 (699)
T ss_pred HHHHhhhCcccceEEecCce------ec----chhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCC
Confidence 34555667777777776533 22 334566666677777777766 44442 222455677777776666
Q ss_pred CCh-HHHHHHHhCCCcCcEEEecCCCCCHHH--HH---HHHhcCCCCcEEEecccccChhHHHHHhhcCCCce
Q 008051 476 SSD-WGMQCVLRGCPKLRKFEIRDCPFGDAA--LL---SGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLN 542 (579)
Q Consensus 476 i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~---~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~ 542 (579)
+.. ..+..+ -++++|+.||+|.-...+.. +. +.-..+|.|+.|+.+|.-++.+-++.+....|+++
T Consensus 207 ~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 207 FESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred CCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 533 233333 34677777777776332221 11 22244777777777777777777777777666664
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.26 E-value=3.4e-06 Score=88.73 Aligned_cols=129 Identities=10% Similarity=0.022 Sum_probs=76.8
Q ss_pred cchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHH
Q 008051 381 RLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYI 459 (579)
Q Consensus 381 ~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~ 459 (579)
+|+.|.+..+.++... ....++|+.|.+.++. ++.+|. . -+++|+.|+++++ ++. +..
T Consensus 305 sL~~L~Ls~N~Lt~LP----~~l~~sL~~L~Ls~N~------Lt~LP~--~------l~~sL~~L~Ls~N~L~~--LP~- 363 (754)
T PRK15370 305 GITHLNVQSNSLTALP----ETLPPGLKTLEAGENA------LTSLPA--S------LPPELQVLDVSKNQITV--LPE- 363 (754)
T ss_pred hHHHHHhcCCccccCC----ccccccceeccccCCc------cccCCh--h------hcCcccEEECCCCCCCc--CCh-
Confidence 4666655555444211 0123578888877654 333321 1 1368888888773 331 111
Q ss_pred HhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCH--HHHHHHHhcCCCCcEEEecccccChhHHHHHh
Q 008051 460 GQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGD--AALLSGLDKCESMRSLWMSACNVTMDGCKLLA 535 (579)
Q Consensus 460 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 535 (579)
...++|+.|+|++|.++... ..+ ..+|+.|++++|.+.. ..++.....++++..|++.+|+++...++.+.
T Consensus 364 -~lp~~L~~LdLs~N~Lt~LP-~~l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 364 -TLPPTITTLDVSRNALTNLP-ENL---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred -hhcCCcCEEECCCCcCCCCC-HhH---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHH
Confidence 11367899999998875311 111 1368888999997753 22344555668889999999998877766653
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.07 E-value=1.3e-05 Score=84.38 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCCh--HHH
Q 008051 405 PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSD--WGM 481 (579)
Q Consensus 405 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~ 481 (579)
++|+.|+++++. ++.+|. .+ .++|+.|+++++ ++.- ...+ .+.|+.|++++|.++. ..+
T Consensus 346 ~sL~~L~Ls~N~------L~~LP~--~l------p~~L~~LdLs~N~Lt~L-P~~l---~~sL~~LdLs~N~L~~LP~sl 407 (754)
T PRK15370 346 PELQVLDVSKNQ------ITVLPE--TL------PPTITTLDVSRNALTNL-PENL---PAALQIMQASRNNLVRLPESL 407 (754)
T ss_pred CcccEEECCCCC------CCcCCh--hh------cCCcCEEECCCCcCCCC-CHhH---HHHHHHHhhccCCcccCchhH
Confidence 577777777643 332221 11 257788888763 3211 1111 1358888888887642 244
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHH
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAAL 506 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~ 506 (579)
..+...++++..|++.+|+++...+
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls~~tl 432 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFSERTI 432 (754)
T ss_pred HHHhhcCCCccEEEeeCCCccHHHH
Confidence 5555567888999999998876544
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=4.6e-07 Score=83.52 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=66.5
Q ss_pred HHHHHhcC-CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccC-CCccccccc
Q 008051 105 LVAFADRY-PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQE-NGIEDISGS 182 (579)
Q Consensus 105 l~~l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~i~~~~~~ 182 (579)
+.++.... +..++|+|..+.|+...-.++. .+++|+.|+|+.+ +++..+- ..+++++.|.+|.+.+ |.|++....
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~-~l~~LRrLdLS~N-~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFK-TLHRLRRLDLSKN-NISFIAP-DAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhcc-chhhhceeccccc-chhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 44444444 4566778877776654444443 6678888888877 5655433 3444677777777766 676665543
Q ss_pred ccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 183 WLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 183 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
.+. ++..|+-|.+.-+. ++- .....++.+++|..|.+..+.
T Consensus 135 ~F~----gL~slqrLllNan~--i~C-ir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 135 AFG----GLSSLQRLLLNANH--INC-IRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred Hhh----hHHHHHHHhcChhh--hcc-hhHHHHHHhhhcchhcccchh
Confidence 332 33455555554332 111 122334666777777776554
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=6.2e-06 Score=69.24 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=79.1
Q ss_pred cceeeccc-ccChHHHHHHHhcccCcCeeeccccC-CChHHHHHHHhCCCcCcEEEecCC-CCCHHHHHHHHhcCCCCcE
Q 008051 442 LQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAG-SSDWGMQCVLRGCPKLRKFEIRDC-PFGDAALLSGLDKCESMRS 518 (579)
Q Consensus 442 L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~L~~ 518 (579)
++.++-++ .+...++.++ ..++.++.|.+.+|. +.|.++..+..-.++|+.|+|++| .|++.++ ..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence 44555555 4566666666 567889999999997 788888887667899999999999 6888866 67778899999
Q ss_pred EEecccc-cCh-h-HHHHHhhcCCCceEEEec
Q 008051 519 LWMSACN-VTM-D-GCKLLASKKPRLNVEVIK 547 (579)
Q Consensus 519 L~l~~~~-i~~-~-~~~~l~~~~p~l~~~~~~ 547 (579)
|.+.+=+ +.. + ....+...+|+++|.-.+
T Consensus 181 L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d 212 (221)
T KOG3864|consen 181 LHLYDLPYVANLELVQRQLEEALPKCDIVGPD 212 (221)
T ss_pred HHhcCchhhhchHHHHHHHHHhCcccceechh
Confidence 9999988 433 3 356677899999875433
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.97 E-value=1.6e-06 Score=80.12 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=25.3
Q ss_pred HHHHHhhCC-CCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccc
Q 008051 130 LEFLAVSFP-NFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDIS 180 (579)
Q Consensus 130 l~~l~~~~~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~ 180 (579)
+..+...+| .-..++|..+ .++... +..++.+++|+.|+|+.|.|+...
T Consensus 58 L~eVP~~LP~~tveirLdqN-~I~~iP-~~aF~~l~~LRrLdLS~N~Is~I~ 107 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQN-QISSIP-PGAFKTLHRLRRLDLSKNNISFIA 107 (498)
T ss_pred cccCcccCCCcceEEEeccC-CcccCC-hhhccchhhhceecccccchhhcC
Confidence 333343444 4555666654 343321 234446667777777776655443
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.91 E-value=2.9e-06 Score=75.35 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=86.5
Q ss_pred cchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHH
Q 008051 381 RLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIG 460 (579)
Q Consensus 381 ~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 460 (579)
.|+.++++.+.++.. ..-.+-.|.++.|++++++. .. +.. +..+++|+.|+++++.- ..+.-..
T Consensus 285 ~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i------~~------v~n-La~L~~L~~LDLS~N~L-s~~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRI------RT------VQN-LAELPQLQLLDLSGNLL-AECVGWH 348 (490)
T ss_pred hhhhccccccchhhh--hhhhhhccceeEEeccccce------ee------ehh-hhhcccceEeecccchh-HhhhhhH
Confidence 466666666555421 11123568999999987652 21 112 34578999999988411 1222233
Q ss_pred hcccCcCeeeccccCCCh-HHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 461 QYAKNLELLSVAFAGSSD-WGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 461 ~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
..+-++++|.++.|.+.+ .|+ ..+-+|..|++++|+|.+..-+..+.++|-|+.|.+.+|++.
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGL----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhh----HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 456789999999998743 233 345789999999999987666788899999999999999953
No 44
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.90 E-value=2e-05 Score=78.47 Aligned_cols=238 Identities=18% Similarity=0.139 Sum_probs=123.9
Q ss_pred CCCCCeeeeccccCCcHHHHHHH---HcCCc-CcEEeccC-ccChHHHHHHhcc---C-CCCceEEEecCCCCcchhccc
Q 008051 296 CANLTFLNLSYATLGSSELVKLL---MHCPL-LKRLWVLD-TVEDRGLEAVGSS---C-PLLEELRVFPADPFDEEITYG 366 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~~---~~~~~-L~~L~l~~-~~~~~~l~~~~~~---~-~~L~~L~l~~~~~~~~~~~~~ 366 (579)
..++++|++.+|.++......+. ...+. +..|++.. ...+.++..+... + +.++.+++..+.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns--------- 273 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS--------- 273 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC---------
Confidence 44566666666665544433332 22333 34455543 3444445444422 2 456788887554
Q ss_pred chhHH---HHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhC---CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCc
Q 008051 367 VTEAG---FLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNC---PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCT 440 (579)
Q Consensus 367 ~~~~~---~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 440 (579)
+++.+ +......|+.++.+.+..+.+.+.....+.+.. ..+..+.+.+... .+. .....+......-.
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~-----~~~-~~~~~~~~~~~~~~ 347 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK-----GTR-GGTSVLAEADAQRQ 347 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc-----cch-hHHHHHHHHHHHhh
Confidence 44433 444445677888888888888877766655433 2344444443221 110 00011111111111
Q ss_pred ccceeeccc-ccChHHHHHHH----hcccCcCeeeccccCCChHHHHHH---HhCCCcCcEEEecCCCCCHHHHHHHH--
Q 008051 441 NLQRLSLSG-LLTDLTFEYIG----QYAKNLELLSVAFAGSSDWGMQCV---LRGCPKLRKFEIRDCPFGDAALLSGL-- 510 (579)
Q Consensus 441 ~L~~L~l~~-~~~~~~~~~~~----~~~~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l-- 510 (579)
.+....+++ ...+....... ..-+.+..+.+..+.+.+.+...+ ....+.++.++++.|...+.....+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~ 427 (478)
T KOG4308|consen 348 LLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQ 427 (478)
T ss_pred hhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHh
Confidence 222223333 23333332221 122345666666666544443333 33478899999999976665443333
Q ss_pred --hcCCCCcEEEecccccChhHHHHHhhcC---CCceEEEeccc
Q 008051 511 --DKCESMRSLWMSACNVTMDGCKLLASKK---PRLNVEVIKEA 549 (579)
Q Consensus 511 --~~~~~L~~L~l~~~~i~~~~~~~l~~~~---p~l~~~~~~~~ 549 (579)
.+. .++.++++.|+++..|...+.... |.......+.+
T Consensus 428 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (478)
T KOG4308|consen 428 LSRNG-SLKALRLSRNPITALGTEELQRALALNPGILAIRLRGN 470 (478)
T ss_pred hhhcc-cchhhhhccChhhhcchHHHHHHHhcCCCcceeecccC
Confidence 345 899999999998888776665433 44544444444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.80 E-value=2.3e-06 Score=75.97 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=121.3
Q ss_pred HhhhhhcCCCCCeeeecccc--CCcHHHH-----HHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcc
Q 008051 289 FPALSPVCANLTFLNLSYAT--LGSSELV-----KLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDE 361 (579)
Q Consensus 289 l~~~~~~~~~L~~L~l~~~~--~~~~~l~-----~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 361 (579)
+..+...+..|.+|.+++.. +....+. .-+..+.+|+.+.++.+.... +..+...-|.|+.+.+....
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~---- 248 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTT---- 248 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccc----
Confidence 45566677788888887654 3322221 122445677777777653332 22222334677777776321
Q ss_pred hhcccchhHHHHHHHcCCCcchhh-hhcC-cCCCHH-HHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhc
Q 008051 362 EITYGVTEAGFLAVSHGCPRLQYV-LYFC-QAMTNA-AVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRT 438 (579)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~L~~L-~~~~-~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 438 (579)
+.+.. .. .|. ..+ +... ..-+.. .+.......+.|+.++|+++. |+. +..-.+-
T Consensus 249 -----~~~~~---~l--~pe-~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~------I~~------iDESvKL 305 (490)
T KOG1259|consen 249 -----IQDVP---SL--LPE-TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL------ITQ------IDESVKL 305 (490)
T ss_pred -----ccccc---cc--cch-hhhcCccCCCCCccCCceEEecchHhhhhhccccccc------hhh------hhhhhhh
Confidence 11110 00 010 011 1100 000000 011112234567888888654 331 2223344
Q ss_pred Ccccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCc
Q 008051 439 CTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMR 517 (579)
Q Consensus 439 ~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 517 (579)
.|.++.|+++.+ +.. +.. ...+++|..|++++|.++.. .-+-..+-|++.|.+.+|.+.+- +.+..+.+|.
T Consensus 306 ~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~La~N~iE~L---SGL~KLYSLv 377 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLKLAQNKIETL---SGLRKLYSLV 377 (490)
T ss_pred ccceeEEeccccceee--ehh-hhhcccceEeecccchhHhh--hhhHhhhcCEeeeehhhhhHhhh---hhhHhhhhhe
Confidence 688899998763 221 112 24568899999998876531 22223467888899988877653 5567778899
Q ss_pred EEEecccccCh-hHHHHHhhcCCCceEEEecccc
Q 008051 518 SLWMSACNVTM-DGCKLLASKKPRLNVEVIKEAE 550 (579)
Q Consensus 518 ~L~l~~~~i~~-~~~~~l~~~~p~l~~~~~~~~~ 550 (579)
.|++.+|+|.. +.++.+ ..+|.+.+..+..+|
T Consensus 378 nLDl~~N~Ie~ldeV~~I-G~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 378 NLDLSSNQIEELDEVNHI-GNLPCLETLRLTGNP 410 (490)
T ss_pred eccccccchhhHHHhccc-ccccHHHHHhhcCCC
Confidence 99999999743 444444 357777655555553
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=2.5e-06 Score=58.88 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=45.6
Q ss_pred cCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 464 KNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 464 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
|+|+.|++++|.++... ...+.++++|++|++++|.+... ....+.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC-TTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCcC
Confidence 57888888888765322 22346679999999999987653 235678899999999999874
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=8.5e-05 Score=46.69 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=25.1
Q ss_pred CcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 489 PKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
++|++|++++|.+++ +...+.++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 467777777777775 33446777777777777777653
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.52 E-value=6.8e-05 Score=80.49 Aligned_cols=227 Identities=20% Similarity=0.199 Sum_probs=117.1
Q ss_pred cCCCCCeeeecCcc--cChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccc
Q 008051 111 RYPSLEELRLKRMS--VSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFP 188 (579)
Q Consensus 111 ~~~~L~~L~l~~~~--i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~ 188 (579)
.++.|++|-+..+. +...... +...+|.|+.|++++|..... ++.....+-+|++|+++++.+.. ++.-.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~t~I~~-----LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSDTGISH-----LPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccCCCccc-----cchHH
Confidence 56778888887764 2222222 234788999999998755544 66666678899999998887542 22223
Q ss_pred ccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc--ChHHHHHHHhhCCCCeeecccccccccChhhHHHHH
Q 008051 189 ESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI--SLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELE 266 (579)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 266 (579)
..+..|.+|++.++. ....++.+...+++|++|.+.... .......-+..+.+|+.+... .... .....
T Consensus 615 ~~Lk~L~~Lnl~~~~---~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~---~~s~-~~~e~-- 685 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTG---RLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT---ISSV-LLLED-- 685 (889)
T ss_pred HHHHhhheecccccc---ccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee---cchh-HhHhh--
Confidence 356678888888664 222235556678999999987764 111122223333444433331 1111 00111
Q ss_pred HHHhcCcccccccCc---cccccchHhhhhhcCCCCCeeeeccccCCcHHHHH----HHH-cCCcCcEEeccCccChHHH
Q 008051 267 SAFNKCKNIHKLSGL---WQATALYFPALSPVCANLTFLNLSYATLGSSELVK----LLM-HCPLLKRLWVLDTVEDRGL 338 (579)
Q Consensus 267 ~~~~~~~~L~~L~~~---~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~----~~~-~~~~L~~L~l~~~~~~~~l 338 (579)
+....+|.++... ................+|+.|.+.+|.+.+..... ... .++++..+.+.++.....+
T Consensus 686 --l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 686 --LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred --hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 1222222222100 00111222233446788999999888754322110 001 1334444444333222222
Q ss_pred HHHhccCCCCceEEEecCC
Q 008051 339 EAVGSSCPLLEELRVFPAD 357 (579)
Q Consensus 339 ~~~~~~~~~L~~L~l~~~~ 357 (579)
... ...|+|+.|.+..|.
T Consensus 764 ~~~-~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 764 TWL-LFAPHLTSLSLVSCR 781 (889)
T ss_pred chh-hccCcccEEEEeccc
Confidence 211 235788888888654
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00018 Score=60.69 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=62.7
Q ss_pred CCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCC-CcccccccccccccccCC
Q 008051 114 SLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQEN-GIEDISGSWLSCFPESFT 192 (579)
Q Consensus 114 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~l~~~~~ 192 (579)
.++.++-+++.|..++++.+- +++.++.|.+.+|.++.+..+..+..-.++|+.|++++| .|++.+..++. .++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~----~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL----KLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH----Hhh
Confidence 466777788888888888877 888899999999988888888888877788888888888 56666654443 334
Q ss_pred ccceeecccc
Q 008051 193 SLEVLNFANV 202 (579)
Q Consensus 193 ~L~~L~l~~~ 202 (579)
+|+.|.+.+.
T Consensus 177 nLr~L~l~~l 186 (221)
T KOG3864|consen 177 NLRRLHLYDL 186 (221)
T ss_pred hhHHHHhcCc
Confidence 5555555543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=1.3e-05 Score=80.14 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=73.4
Q ss_pred HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCCh-H
Q 008051 402 RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSD-W 479 (579)
Q Consensus 402 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~ 479 (579)
+-+|.|+.|+|+.+.. + .+ ..++.|+.|+.|||+.+ +.. +..+......|..|.+++|.++. .
T Consensus 184 qll~ale~LnLshNk~------~------~v-~~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~ 248 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKF------T------KV-DNLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTLR 248 (1096)
T ss_pred HHHHHhhhhccchhhh------h------hh-HHHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhhh
Confidence 3557888999987653 2 11 13456889999999762 221 22233323349999999998643 2
Q ss_pred HHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 480 GMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 480 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
|+ .++.+|+.||+++|-+.+..-.+.+-.+..|+.|+|.||++
T Consensus 249 gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 249 GI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 33 45689999999999776665567777778899999999995
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.06 E-value=1.6e-05 Score=64.67 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
..+|+.|+++++++.+- ..-...+++|+.|++..+. +.. ++.-+..+|.|+.|++..|.+...... --+-..
T Consensus 55 l~nlevln~~nnqie~l--p~~issl~klr~lnvgmnr-l~~--lprgfgs~p~levldltynnl~e~~lp---gnff~m 126 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEEL--PTSISSLPKLRILNVGMNR-LNI--LPRGFGSFPALEVLDLTYNNLNENSLP---GNFFYM 126 (264)
T ss_pred hhhhhhhhcccchhhhc--Chhhhhchhhhheecchhh-hhc--CccccCCCchhhhhhccccccccccCC---cchhHH
Confidence 34566666666654431 1112255566666665432 111 222334566666666666654433211 000022
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGT 250 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l 250 (579)
..|+-|.++.+ +++.++.-+..+.+|+.|.+..+. .-.+++-+..+..|++|.+
T Consensus 127 ~tlralyl~dn----dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 127 TTLRALYLGDN----DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred HHHHHHHhcCC----CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 33444444432 444444445666666666666664 3344455555555555544
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.05 E-value=0.00016 Score=77.70 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=33.3
Q ss_pred cCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeeccc
Q 008051 190 SFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 251 (579)
..+.|+.|+++++. +...++..+..+-+|++|++.++. +..++..+..++.|.+|++.
T Consensus 569 ~m~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred hCcceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccc
Confidence 45566666666542 444455555556666666666654 55555566666666666554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.01 E-value=0.0006 Score=42.84 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=29.4
Q ss_pred cCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCH
Q 008051 464 KNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGD 503 (579)
Q Consensus 464 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 503 (579)
++|++|++++|.+++. ...+.++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCCC
Confidence 5789999999998863 3435789999999999998875
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.96 E-value=0.00034 Score=48.14 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccc
Q 008051 138 PNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANV 202 (579)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~ 202 (579)
|+|++|+++++ .++... ...+.++++|++|++++|.++......+ ..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~f----~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDAF----SNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETSSSESEEETTTT----TTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCCccCccCHHHH----cCCCCCCEEeCcCC
Confidence 35666666665 443311 1233456666666666666554433222 24555666665544
No 55
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.92 E-value=0.00047 Score=68.91 Aligned_cols=192 Identities=17% Similarity=0.255 Sum_probs=93.4
Q ss_pred CCeeeeccccCCcHHHHH---HHHcCCcCcEEeccC-ccChHHHHHHhccC----CCCceEEEecCCCCcchhcccchhH
Q 008051 299 LTFLNLSYATLGSSELVK---LLMHCPLLKRLWVLD-TVEDRGLEAVGSSC----PLLEELRVFPADPFDEEITYGVTEA 370 (579)
Q Consensus 299 L~~L~l~~~~~~~~~l~~---~~~~~~~L~~L~l~~-~~~~~~l~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~ 370 (579)
+..+.+.+|.+.+..... .+...+.|+.|++++ .+.+.+...+.... ..++.|++..|. ++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~---------l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS---------LTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc---------cccc
Confidence 677888888866555444 445566777888875 36666666655433 235666666553 4544
Q ss_pred HHHHHHc---CCCcchhhhhcCcCCCHHHHHHHHHhC-------CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCc
Q 008051 371 GFLAVSH---GCPRLQYVLYFCQAMTNAAVATIVRNC-------PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCT 440 (579)
Q Consensus 371 ~~~~l~~---~~~~L~~L~~~~~~~~~~~l~~l~~~~-------~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 440 (579)
+...++. .+..++.+++..+.+...+...+.+.. .++++|.+.++.. +... -..+.......+
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~------t~~~-c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGV------TSSS-CALLDEVLASGE 232 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCc------ChHH-HHHHHHHHhccc
Confidence 4333332 255666666665555554444443322 2455555555431 1000 011112222222
Q ss_pred c-cceeeccc-ccChHHHHHHHhcc----cCcCeeeccccCCChHHHHHHH---hCCCcCcEEEecCCCCCHHHH
Q 008051 441 N-LQRLSLSG-LLTDLTFEYIGQYA----KNLELLSVAFAGSSDWGMQCVL---RGCPKLRKFEIRDCPFGDAAL 506 (579)
Q Consensus 441 ~-L~~L~l~~-~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~ 506 (579)
. +..|++.. .+.|.++..+...+ +.++.+++..|.+++.+...+. ..|++++++.+++|++++...
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 2 44455544 34444444433322 2335555555555444433222 224455555555555554444
No 56
>PLN03150 hypothetical protein; Provisional
Probab=96.73 E-value=0.0018 Score=68.06 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=31.4
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.+++|+.|+|++|.+.. .+...+..+++|+.|++++|.++.. +++.+.++++|+.|+|++|.++
T Consensus 440 ~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 440 KLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCccc
Confidence 34555555555555432 1222234455555555555555433 3344455555555555555543
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.73 E-value=5.9e-05 Score=61.52 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=84.6
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
..+++.|.++++.++... ..++ .+.+|+.|++.++ .+++ ++.-...+++|+.|++.-|.+.. +..-+.++
T Consensus 32 ~s~ITrLtLSHNKl~~vp-pnia-~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~-----lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP-PNIA-ELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNI-----LPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceeecC-CcHH-Hhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhc-----CccccCCC
Confidence 456778888888754321 1223 5568999999987 5544 66666689999999998775332 11222367
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeeccc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 251 (579)
+.|+.|++.++. .+...++.-+-.+..|+-|.++.+. ++.++.-+.++++|+-|.+.
T Consensus 102 p~levldltynn--l~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 102 PALEVLDLTYNN--LNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLR 158 (264)
T ss_pred chhhhhhccccc--cccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeec
Confidence 889999998874 5665555555566777778887765 55556666777777776554
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00048 Score=61.06 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=73.5
Q ss_pred CCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHH
Q 008051 404 CPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQ 482 (579)
Q Consensus 404 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 482 (579)
+.+.++|+.++|+ ++ |- .+...++.|+.|.|+-+ ++. +.. ...|++|++|.|..|.|.+..-.
T Consensus 18 l~~vkKLNcwg~~------L~----DI---sic~kMp~lEVLsLSvNkIss--L~p-l~rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCG------LD----DI---SICEKMPLLEVLSLSVNKISS--LAP-LQRCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHhhhhcccCCC------cc----HH---HHHHhcccceeEEeecccccc--chh-HHHHHHHHHHHHHhcccccHHHH
Confidence 4477788888765 33 21 34456788888888642 222 222 25678888888888887655555
Q ss_pred HHHhCCCcCcEEEecCCCCCHHHH----HHHHhcCCCCcEEEecccccChhHHH-HHhhcC-CCc
Q 008051 483 CVLRGCPKLRKFEIRDCPFGDAAL----LSGLDKCESMRSLWMSACNVTMDGCK-LLASKK-PRL 541 (579)
Q Consensus 483 ~l~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~-~l~~~~-p~l 541 (579)
.-+.++|+|+.|+|..|+....+. ..++.-+|+|++|+ +-.+|.+.++ +|+... |.+
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~ALr~g~~PE~ 144 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEALRDGIYPEC 144 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHHhcCCCCch
Confidence 556778888888888886543322 34456677777775 2226665543 333333 554
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.65 E-value=0.00048 Score=69.36 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHH
Q 008051 379 CPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEY 458 (579)
Q Consensus 379 ~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 458 (579)
+|.|+.|+++-+++++-. ++ ..|+.|++|+|+++. +..+|- .+ ...|. |+.|.+.++ .-..+.-
T Consensus 186 l~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN~------L~~vp~-l~----~~gc~-L~~L~lrnN-~l~tL~g 249 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYNC------LRHVPQ-LS----MVGCK-LQLLNLRNN-ALTTLRG 249 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HH-Hhcccccccccccch------hccccc-cc----hhhhh-heeeeeccc-HHHhhhh
Confidence 567888877777666543 33 468899999998764 222211 00 11244 888888773 1111222
Q ss_pred HHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCC
Q 008051 459 IGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFG 502 (579)
Q Consensus 459 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 502 (579)
+ .++.+|+.|++++|-+.+..-...+..+..|+.|++.||++-
T Consensus 250 i-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 I-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred H-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 2 456789999999887654433334455678999999999774
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.61 E-value=0.0018 Score=61.63 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=35.3
Q ss_pred ccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 13 SEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 13 ~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
.|.+||+|+|..|.+.|+..-|+.+.+.||+.||.++.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 58999999999999999868899999999999999864
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.59 E-value=0.0021 Score=54.44 Aligned_cols=90 Identities=26% Similarity=0.323 Sum_probs=54.8
Q ss_pred hcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccc
Q 008051 110 DRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPE 189 (579)
Q Consensus 110 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 189 (579)
.+.+.|..|.++++.|+..+ ..+...+|+|+.|.+.++.-..-.++..+. .||+|++|.+-+|.++......... .-
T Consensus 61 p~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~yv-l~ 137 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRLYV-LY 137 (233)
T ss_pred CCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCceeEE-EE
Confidence 35677888888888766532 122335578888888877322223344444 6888888888888766544332221 22
Q ss_pred cCCccceeecccc
Q 008051 190 SFTSLEVLNFANV 202 (579)
Q Consensus 190 ~~~~L~~L~l~~~ 202 (579)
.+|+|+.|++...
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 5667777777654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0007 Score=60.09 Aligned_cols=125 Identities=20% Similarity=0.289 Sum_probs=76.4
Q ss_pred chhHHHHHHHcCCCcc---hhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccc
Q 008051 367 VTEAGFLAVSHGCPRL---QYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQ 443 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~L---~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~ 443 (579)
+++..+..-++ |+.| +.|......++|.+ +...+|.|+.|.|+-++ |+++. -+..|++|+
T Consensus 4 LTe~mV~~raK-~sdl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk------IssL~-------pl~rCtrLk 66 (388)
T KOG2123|consen 4 LTESMVYIRAK-CSDLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK------ISSLA-------PLQRCTRLK 66 (388)
T ss_pred HHHHHHHHHHH-hhHHHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc------cccch-------hHHHHHHHH
Confidence 44444433333 5544 44455555566654 45678889998888543 44321 234688899
Q ss_pred eeeccc-ccChHHHHHHHhcccCcCeeeccccCCChH-H---HHHHHhCCCcCcEEEecCCCCCHHHHHHHH
Q 008051 444 RLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDW-G---MQCVLRGCPKLRKFEIRDCPFGDAALLSGL 510 (579)
Q Consensus 444 ~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 510 (579)
+|.|.. ++.+-.=.....++|+|+.|-|..|+.... | -...+..+|+|++|| +-.++...+.+.+
T Consensus 67 ElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL 136 (388)
T KOG2123|consen 67 ELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL 136 (388)
T ss_pred HHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence 998866 455544444557889999999988874221 1 224456688888873 3366666565555
No 63
>PLN03150 hypothetical protein; Provisional
Probab=96.38 E-value=0.0039 Score=65.55 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=58.5
Q ss_pred HhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhc-C
Q 008051 436 VRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDK-C 513 (579)
Q Consensus 436 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~ 513 (579)
+..+++|+.|+++++ +... +......+++|+.|++++|.++.. +...+.++++|+.|++++|.++.. ++..+.. .
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~~~ 514 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGR-VPAALGGRL 514 (623)
T ss_pred HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCccccc-CChHHhhcc
Confidence 456788999999773 3322 222335678899999999887642 233446788999999999987755 3344433 3
Q ss_pred CCCcEEEecccc
Q 008051 514 ESMRSLWMSACN 525 (579)
Q Consensus 514 ~~L~~L~l~~~~ 525 (579)
.++..+++.+|.
T Consensus 515 ~~~~~l~~~~N~ 526 (623)
T PLN03150 515 LHRASFNFTDNA 526 (623)
T ss_pred ccCceEEecCCc
Confidence 466778887775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0017 Score=57.48 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=39.2
Q ss_pred Ccccceeecccc--cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCH--HHHHHHHhcCC
Q 008051 439 CTNLQRLSLSGL--LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGD--AALLSGLDKCE 514 (579)
Q Consensus 439 ~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~ 514 (579)
+|+||.|.++.+ -..-++..++..+|+|++|+++.|++.+..-..-+..+.+|..|++.+|..+. +.-..++.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 456666666542 22223444455556666666666665432211222345556666666663321 11223334445
Q ss_pred CCcEEEe
Q 008051 515 SMRSLWM 521 (579)
Q Consensus 515 ~L~~L~l 521 (579)
+|++|+-
T Consensus 144 ~L~~LD~ 150 (260)
T KOG2739|consen 144 SLKYLDG 150 (260)
T ss_pred hhccccc
Confidence 5555543
No 65
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.16 E-value=0.0045 Score=55.96 Aligned_cols=39 Identities=15% Similarity=0.362 Sum_probs=33.4
Q ss_pred cccccCchHHHHHHHHhcC----ChhhhhHhhHHhHHHHHHhh
Q 008051 12 TSEVDSVKQAITKVLALLT----SHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 12 ~~~~~LP~eil~~If~~L~----~~~~~~~~s~Vcr~W~~~~~ 50 (579)
.+|..||||||..||..+- +.+++.++|+|||.|+..++
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 4578999999999999764 25889999999999999864
No 66
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.11 E-value=0.0052 Score=33.48 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=15.2
Q ss_pred CCCCcEEEecccc-cChhHHHHHh
Q 008051 513 CESMRSLWMSACN-VTMDGCKLLA 535 (579)
Q Consensus 513 ~~~L~~L~l~~~~-i~~~~~~~l~ 535 (579)
|++|+.|+|++|+ +|+.|+..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4666777777776 6777666654
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.80 E-value=0.0072 Score=32.17 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=13.3
Q ss_pred CCCCcEEEecccccChhHHHHHh
Q 008051 513 CESMRSLWMSACNVTMDGCKLLA 535 (579)
Q Consensus 513 ~~~L~~L~l~~~~i~~~~~~~l~ 535 (579)
+++|+.|+|++|+|+++|+..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35667777777777777666654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.68 E-value=0.004 Score=55.14 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=48.7
Q ss_pred cccCcCeeecccc--CCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 462 YAKNLELLSVAFA--GSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 462 ~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.+|+|++|.++.| .+.. ++..++..+|+|++|++++|.+.+-.....++.+++|..|++++|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4578888888888 3433 667777778888888888887776444566677788888888888843
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.53 E-value=0.015 Score=49.38 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=53.0
Q ss_pred hcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChh-HHHH-HhhcC
Q 008051 461 QYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMD-GCKL-LASKK 538 (579)
Q Consensus 461 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~-l~~~~ 538 (579)
..++.|..|.+.+|.|+..+ .-+...+|+|+.|.+.+|.+...+-..-+..||+|+.|.+-+|++++. +.+. +.-.+
T Consensus 61 p~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 35677888888888875322 112223678888888888776655556677888888888888887654 3322 23355
Q ss_pred CCceE
Q 008051 539 PRLNV 543 (579)
Q Consensus 539 p~l~~ 543 (579)
|++++
T Consensus 140 p~l~~ 144 (233)
T KOG1644|consen 140 PSLRT 144 (233)
T ss_pred CcceE
Confidence 66643
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.44 E-value=0.013 Score=53.46 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=35.5
Q ss_pred CcccccCc----hHHHHHHHHhcCChhhhhHhhHHhHHHHHHh
Q 008051 11 NTSEVDSV----KQAITKVLALLTSHKDHNSASLVCKDWYEAE 49 (579)
Q Consensus 11 ~~~~~~LP----~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~ 49 (579)
.+.+..|| +++.+.||+||+ ..+++.+-+|||+|+.+.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHh
Confidence 47899999 999999999999 799999999999999984
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.40 E-value=0.0088 Score=59.61 Aligned_cols=101 Identities=24% Similarity=0.366 Sum_probs=54.5
Q ss_pred CCCcEEeecCCCCCChHHHHHHHhhC-CCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHH
Q 008051 138 PNFKVLSLSSCDGFSTDGLAAIATNC-KNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVS 216 (579)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 216 (579)
+.++.|++.+. .++. +....... ++|+.|+++++.+.... .-...+++|+.|+++++ ....++....
T Consensus 116 ~~l~~L~l~~n-~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N----~l~~l~~~~~ 183 (394)
T COG4886 116 TNLTSLDLDNN-NITD--IPPLIGLLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFN----DLSDLPKLLS 183 (394)
T ss_pred cceeEEecCCc-cccc--Cccccccchhhcccccccccchhhhh-----hhhhccccccccccCCc----hhhhhhhhhh
Confidence 56677777665 3433 33333333 26777777777654431 01124567777777765 2333444333
Q ss_pred hCCCCCeeEecCccChHHHHHHHhhCCCCeeeccc
Q 008051 217 RCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 251 (579)
..++|+.|.++++. +..++..+.....|+.+.++
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 66777777777765 44444444444445555543
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.05 E-value=0.033 Score=30.26 Aligned_cols=24 Identities=42% Similarity=0.827 Sum_probs=17.1
Q ss_pred CCCCcEEeecCCCCCChHHHHHHH
Q 008051 137 FPNFKVLSLSSCDGFSTDGLAAIA 160 (579)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~l~~~~ 160 (579)
+++|++|++++|.++++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467777777777777777766654
No 73
>PF13013 F-box-like_2: F-box-like domain
Probab=94.94 E-value=0.036 Score=42.51 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=27.9
Q ss_pred CcccccCchHHHHHHHHhcCChhhhhHhhHHhH
Q 008051 11 NTSEVDSVKQAITKVLALLTSHKDHNSASLVCK 43 (579)
Q Consensus 11 ~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr 43 (579)
...+.|||+||+..||.|.+ ..+...+...|+
T Consensus 19 ~ltl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 19 SLTLLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred ccchhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 34699999999999999999 678888888887
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.55 E-value=0.042 Score=30.49 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.3
Q ss_pred CCCcEEEecccccChhHHHHHhhcC
Q 008051 514 ESMRSLWMSACNVTMDGCKLLASKK 538 (579)
Q Consensus 514 ~~L~~L~l~~~~i~~~~~~~l~~~~ 538 (579)
++|+.|+|++|.++++|+..+.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5677888888888888877776543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.34 E-value=0.032 Score=29.62 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=6.8
Q ss_pred CcCcEEEecCCCCCHHH
Q 008051 489 PKLRKFEIRDCPFGDAA 505 (579)
Q Consensus 489 ~~L~~L~l~~~~~~~~~ 505 (579)
++|++|+|++|.+++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 34444444444444443
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.25 E-value=0.027 Score=56.09 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHH
Q 008051 379 CPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEY 458 (579)
Q Consensus 379 ~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 458 (579)
+++|+.|.+..+.+++..... ...++|+.|.++++. +..++. .......|++|.++++- ......
T Consensus 162 l~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~------i~~l~~------~~~~~~~L~~l~~~~N~-~~~~~~ 226 (394)
T COG4886 162 LPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNK------ISDLPP------EIELLSALEELDLSNNS-IIELLS 226 (394)
T ss_pred cccccccccCCchhhhhhhhh--hhhhhhhheeccCCc------cccCch------hhhhhhhhhhhhhcCCc-ceecch
Confidence 455555544444433322111 145667777776544 332221 11123346677775531 001111
Q ss_pred HHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 459 IGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 459 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.....+++..+.+.++.+.+. ......+++|+.|++++|.+++... +....+++.|+++++.++
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhhcccccccccCCceeeec--cchhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 223456677777766665431 2233556778888888887776422 667788888888887654
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.55 E-value=0.069 Score=51.80 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=15.5
Q ss_pred cCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCC
Q 008051 464 KNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDC 499 (579)
Q Consensus 464 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 499 (579)
++|+.|.+++|..... .. .-..+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~L-P~---~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIIL-PE---KLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccC-cc---cccccCcEEEeccc
Confidence 4566666666653210 00 01245666666554
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.47 E-value=0.024 Score=45.01 Aligned_cols=97 Identities=19% Similarity=0.076 Sum_probs=59.1
Q ss_pred cccceeecccccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEE
Q 008051 440 TNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSL 519 (579)
Q Consensus 440 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 519 (579)
..|+..+++++.-......+...+|.++.|++++|.+.+.-.. +...|.|+.|++++|++... ++.+..+.++-.|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCccccc--hHHHHHHHhHHHh
Confidence 4455555544312112224445667788888888887664333 45568888888888887653 4555557788888
Q ss_pred EecccccChhHHHHHhhcCCC
Q 008051 520 WMSACNVTMDGCKLLASKKPR 540 (579)
Q Consensus 520 ~l~~~~i~~~~~~~l~~~~p~ 540 (579)
+..+|.+..-..+.+....|.
T Consensus 129 ds~~na~~eid~dl~~s~~~a 149 (177)
T KOG4579|consen 129 DSPENARAEIDVDLFYSSLPA 149 (177)
T ss_pred cCCCCccccCcHHHhccccHH
Confidence 888887554444444444444
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.36 E-value=0.15 Score=28.23 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=12.3
Q ss_pred CcCeeeccccCCChHHHHHHHh
Q 008051 465 NLELLSVAFAGSSDWGMQCVLR 486 (579)
Q Consensus 465 ~L~~L~l~~~~i~~~~~~~l~~ 486 (579)
+|+.|+|++|.+.++|...+++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHH
Confidence 4555666666665555555543
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.83 E-value=0.049 Score=54.52 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=74.0
Q ss_pred HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHH
Q 008051 402 RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWG 480 (579)
Q Consensus 402 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 480 (579)
..+.+|+.|.+..+. +.. +...+..+++|+.|++++ .+++. ..+ ..++.|+.|++.+|.+++..
T Consensus 92 ~~~~~l~~l~l~~n~------i~~------i~~~l~~~~~L~~L~ls~N~I~~i--~~l-~~l~~L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK------IEK------IENLLSSLVNLQVLDLSFNKITKL--EGL-STLTLLKELNLSGNLISDIS 156 (414)
T ss_pred ccccceeeeeccccc------hhh------cccchhhhhcchheeccccccccc--cch-hhccchhhheeccCcchhcc
Confidence 356788888887654 321 112245689999999987 34432 111 34566999999999986522
Q ss_pred HHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 481 MQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 481 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.+..+++|+.+++++|.+....... +..+.+++.+++.+|.+.
T Consensus 157 ---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 157 ---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 2233789999999999887753312 678899999999999954
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.78 E-value=0.047 Score=54.61 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHH
Q 008051 379 CPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFE 457 (579)
Q Consensus 379 ~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~ 457 (579)
+.+|+.|.++.+.+... ......+++|+.|+++++. |+.+ .++ ..++.|+.|+++++ +.+. .
T Consensus 94 ~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~------I~~i---~~l----~~l~~L~~L~l~~N~i~~~--~ 156 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNK------ITKL---EGL----STLTLLKELNLSGNLISDI--S 156 (414)
T ss_pred ccceeeeeccccchhhc--ccchhhhhcchheeccccc------cccc---cch----hhccchhhheeccCcchhc--c
Confidence 56777777776665432 2213478999999999765 4421 122 23566999999773 3321 1
Q ss_pred HHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 458 YIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 458 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.+ ..+++|+.+++++|.+.+..... ...+.+|+.+.+.+|.+....-... +..+..+.+.+|.++
T Consensus 157 ~~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~---~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 157 GL-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL---LKKLVLLSLLDNKIS 221 (414)
T ss_pred CC-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHH---HHHHHHhhcccccce
Confidence 11 23788999999999986544322 4668999999999997765422222 334444477777753
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.08 E-value=0.08 Score=42.17 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=8.8
Q ss_pred hCCCCCeEeccCCCcccc
Q 008051 162 NCKNLTELDIQENGIEDI 179 (579)
Q Consensus 162 ~~~~L~~L~l~~~~i~~~ 179 (579)
..|.++.|++.+|.+.+.
T Consensus 75 kf~t~t~lNl~~neisdv 92 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDV 92 (177)
T ss_pred ccchhhhhhcchhhhhhc
Confidence 344555555555554443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.94 E-value=0.49 Score=47.06 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=62.8
Q ss_pred HHHHHhcccCcCeeeccccCC-ChHHHHHHHhCCCcCcEEEecCC--CCCHHHHHHHHhcCCCCcEEEecccccCh----
Q 008051 456 FEYIGQYAKNLELLSVAFAGS-SDWGMQCVLRGCPKLRKFEIRDC--PFGDAALLSGLDKCESMRSLWMSACNVTM---- 528 (579)
Q Consensus 456 ~~~~~~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~i~~---- 528 (579)
+..+..+.|.+..+.+++|++ .-+++..+.+..|+|+.|+|++| .+....-..-+ ....|++|.+.||++..
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhh
Confidence 344556788889999999886 34466677777899999999999 44433111222 34678999999999532
Q ss_pred --hHHHHHhhcCCCceEEEeccc
Q 008051 529 --DGCKLLASKKPRLNVEVIKEA 549 (579)
Q Consensus 529 --~~~~~l~~~~p~l~~~~~~~~ 549 (579)
+-++.+.+.+|+|. .+++.
T Consensus 289 ~s~yv~~i~~~FPKL~--~LDG~ 309 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLL--RLDGV 309 (585)
T ss_pred hHHHHHHHHHhcchhe--eecCc
Confidence 34677888999984 44444
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.71 E-value=0.37 Score=23.00 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.0
Q ss_pred cCcEEEecCCC
Q 008051 490 KLRKFEIRDCP 500 (579)
Q Consensus 490 ~L~~L~l~~~~ 500 (579)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.24 E-value=0.25 Score=50.59 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=37.6
Q ss_pred cCCCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHh
Q 008051 8 KDQNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAE 49 (579)
Q Consensus 8 ~~~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~ 49 (579)
....+.+..||.|+...||.||+ .+++..++.||+.|+.++
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred ccccchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhh
Confidence 34568899999999999999999 799999999999999995
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.77 E-value=0.62 Score=45.44 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=34.5
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCC-CCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCC
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFP-NFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQEN 174 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 174 (579)
.+++++.|+++++.++. +. .+| +|++|.+.+|..++. ++... .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~s-----LP-~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES-----LP-VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc-----cC-CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCc
Confidence 46888888888775443 22 234 688888888766533 23222 357888888877
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=82.79 E-value=1.1 Score=34.04 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=23.0
Q ss_pred CcccccCchHHHHHHHHhcCChhhhhH
Q 008051 11 NTSEVDSVKQAITKVLALLTSHKDHNS 37 (579)
Q Consensus 11 ~~~~~~LP~eil~~If~~L~~~~~~~~ 37 (579)
.+.|..||.|+...|++||+ ..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~-~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLS-NKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCC-HHHHHH
Confidence 47899999999999999999 778754
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=80.68 E-value=0.76 Score=46.00 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=16.5
Q ss_pred cCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCC
Q 008051 466 LELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFG 502 (579)
Q Consensus 466 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 502 (579)
|..|++++|+++- +...+..+.+|++|-|.+|++.
T Consensus 213 Li~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 213 LIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeeecccCceee--cchhhhhhhhheeeeeccCCCC
Confidence 5555555555432 1222233455555555555544
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=74.71 E-value=1.6 Score=22.41 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=6.5
Q ss_pred CcEEEecCCCCC
Q 008051 491 LRKFEIRDCPFG 502 (579)
Q Consensus 491 L~~L~l~~~~~~ 502 (579)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 555555555444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.64 E-value=4.8 Score=40.40 Aligned_cols=38 Identities=32% Similarity=0.500 Sum_probs=15.2
Q ss_pred CCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCC
Q 008051 137 FPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQEN 174 (579)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 174 (579)
+|.+..++|+++.-...+++..+....|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 33444444444322222333334444444444444444
No 91
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=73.62 E-value=5.7 Score=35.68 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=35.0
Q ss_pred CCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHh
Q 008051 10 QNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAE 49 (579)
Q Consensus 10 ~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~ 49 (579)
....+.+||.|++..|+..+++.+|+..++.|-...+.+.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 3568999999999999999999999999999887776664
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=59.81 E-value=9 Score=35.91 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=55.7
Q ss_pred hHHHHHHHhcCCCCCeeeecCcc-cChHHHHHHHhhC---CCCcEEeecCCCCC--ChHHHHHHHhhCCCCCeEeccCCC
Q 008051 102 HPWLVAFADRYPSLEELRLKRMS-VSDESLEFLAVSF---PNFKVLSLSSCDGF--STDGLAAIATNCKNLTELDIQENG 175 (579)
Q Consensus 102 ~~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~---~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~~L~l~~~~ 175 (579)
...+..+...-+.++..++++.. +....+..+...+ .+.+.+.+.+...- ...++..++..++.|++|++.+|.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 44555566666888888887765 6665555554333 35666666654221 123345556667788888887777
Q ss_pred cccccccccccccccCCccceeecc
Q 008051 176 IEDISGSWLSCFPESFTSLEVLNFA 200 (579)
Q Consensus 176 i~~~~~~~l~~l~~~~~~L~~L~l~ 200 (579)
|+..+.-.+....+.-.+|..+.+.
T Consensus 267 Itg~gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 267 ITGLGIMALLRALQSNKSLTELKND 291 (353)
T ss_pred cccHHHHHHHHHHhccchhhHhhhh
Confidence 6666543333333333344444333
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.05 E-value=8.8 Score=20.44 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=11.2
Q ss_pred CCCCeEeccCCCccccc
Q 008051 164 KNLTELDIQENGIEDIS 180 (579)
Q Consensus 164 ~~L~~L~l~~~~i~~~~ 180 (579)
++|++|++++|.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56777777777655443
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.05 E-value=8.8 Score=20.44 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=11.2
Q ss_pred CCCCeEeccCCCccccc
Q 008051 164 KNLTELDIQENGIEDIS 180 (579)
Q Consensus 164 ~~L~~L~l~~~~i~~~~ 180 (579)
++|++|++++|.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 56777777777655443
No 95
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=57.69 E-value=6.8 Score=31.35 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=26.1
Q ss_pred hcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccC
Q 008051 110 DRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQE 173 (579)
Q Consensus 110 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 173 (579)
..+++|+.+.+... +..-.-..+. .++.|+.+.+... +...+ ...+..+++|+.+.+..
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~-~~~~l~~i~~~~~--~~~i~-~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFS-NCKSLESITFPNN--LKSIG-DNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTT-T-TT-EEEEETST--T-EE--TTTTTT-TTECEEEETT
T ss_pred cccccccccccccc-ccccceeeee-ccccccccccccc--ccccc-cccccccccccccccCc
Confidence 35566777777653 2222222222 4556777777542 21111 12334577777777654
No 96
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=55.34 E-value=1.7 Score=43.69 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHh
Q 008051 138 PNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSR 217 (579)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~ 217 (579)
++|..|+.+.|. +. .++.-..++.+|+.|.+..|.+.+...+. ..-.|..|+++++. ...++.-+++
T Consensus 166 ~tl~~ld~s~ne-i~--slpsql~~l~slr~l~vrRn~l~~lp~El------~~LpLi~lDfScNk----is~iPv~fr~ 232 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEEL------CSLPLIRLDFSCNK----ISYLPVDFRK 232 (722)
T ss_pred hhHHHhhhhhhh-hh--hchHHhhhHHHHHHHHHhhhhhhhCCHHH------hCCceeeeecccCc----eeecchhhhh
Confidence 345555555442 11 12333334555666666555533322211 12356777777663 3344555678
Q ss_pred CCCCCeeEecCcc
Q 008051 218 CKSLKDLKVNKSI 230 (579)
Q Consensus 218 ~~~L~~L~l~~~~ 230 (579)
+..|++|.+.++.
T Consensus 233 m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 233 MRHLQVLQLENNP 245 (722)
T ss_pred hhhheeeeeccCC
Confidence 8888888888776
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.57 E-value=13 Score=20.16 Aligned_cols=13 Identities=8% Similarity=0.342 Sum_probs=6.5
Q ss_pred CcCcEEEecCCCC
Q 008051 489 PKLRKFEIRDCPF 501 (579)
Q Consensus 489 ~~L~~L~l~~~~~ 501 (579)
.+|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555544
No 98
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=50.38 E-value=36 Score=32.13 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=55.9
Q ss_pred HHhcCcccceeeccc--ccChHHHHHHHh---cccCcCeeeccccCCChH---HHHHHHhCCCcCcEEEecCCCCCHHHH
Q 008051 435 VVRTCTNLQRLSLSG--LLTDLTFEYIGQ---YAKNLELLSVAFAGSSDW---GMQCVLRGCPKLRKFEIRDCPFGDAAL 506 (579)
Q Consensus 435 ~~~~~~~L~~L~l~~--~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~ 506 (579)
+-.+-+.|+...|.+ ++....+..+.. ..+..+.+.+.+....+. ++..++..++.|++|++.+|.|+..++
T Consensus 193 i~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi 272 (353)
T KOG3735|consen 193 IKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGI 272 (353)
T ss_pred HhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHH
Confidence 333457888888877 566665555443 335566667766665433 344555668889999999999988888
Q ss_pred HHHHhc---CCCCcEEEe
Q 008051 507 LSGLDK---CESMRSLWM 521 (579)
Q Consensus 507 ~~~l~~---~~~L~~L~l 521 (579)
..++.. -.+|..+.+
T Consensus 273 ~a~~~al~~n~tl~el~~ 290 (353)
T KOG3735|consen 273 MALLRALQSNKSLTELKN 290 (353)
T ss_pred HHHHHHHhccchhhHhhh
Confidence 666543 345555544
No 99
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=49.66 E-value=18 Score=19.48 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=12.2
Q ss_pred CCeeeeccccCCcH-HHHHHHHcCC
Q 008051 299 LTFLNLSYATLGSS-ELVKLLMHCP 322 (579)
Q Consensus 299 L~~L~l~~~~~~~~-~l~~~~~~~~ 322 (579)
|+.|.|....+.++ .+..++++||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 55566655553332 4555555554
No 100
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=35.84 E-value=24 Score=33.34 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.1
Q ss_pred cccccCchHHHHHHHHhcCCh-------hhhhHhhHHhHHHHHHh
Q 008051 12 TSEVDSVKQAITKVLALLTSH-------KDHNSASLVCKDWYEAE 49 (579)
Q Consensus 12 ~~~~~LP~eil~~If~~L~~~-------~~~~~~s~Vcr~W~~~~ 49 (579)
..|.+||+|.|..|+...... +....++-||+.|+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 478999999999999998632 34688899999999984
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=27.29 E-value=36 Score=18.47 Aligned_cols=13 Identities=8% Similarity=0.383 Sum_probs=7.5
Q ss_pred cCcEEEecCCCCC
Q 008051 490 KLRKFEIRDCPFG 502 (579)
Q Consensus 490 ~L~~L~l~~~~~~ 502 (579)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666544
Done!