Query 008051
Match_columns 579
No_of_seqs 275 out of 3147
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 9.7E-61 3.3E-65 502.9 55.4 567 12-579 4-576 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.6E-58 5.3E-63 485.7 44.1 561 12-579 11-588 (592)
3 3ogk_B Coronatine-insensitive 100.0 7.2E-30 2.5E-34 267.8 33.7 416 105-553 65-527 (592)
4 2p1m_B Transport inhibitor res 100.0 1.4E-29 4.7E-34 265.8 31.8 412 67-525 98-542 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-28 5.5E-33 249.3 32.8 392 105-544 20-460 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-27 7.1E-32 241.1 31.1 380 113-540 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 5.2E-25 1.8E-29 213.4 22.1 288 10-408 5-299 (336)
8 3t6q_A CD180 antigen; protein- 99.9 6.4E-24 2.2E-28 223.1 -5.4 136 70-230 53-190 (606)
9 3rgz_A Protein brassinosteroid 99.9 1.6E-24 5.3E-29 232.8 -10.8 405 110-551 123-550 (768)
10 3t6q_A CD180 antigen; protein- 99.8 7E-24 2.4E-28 222.8 -7.2 154 74-252 33-188 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.8 1.8E-23 6.2E-28 219.6 -5.3 228 295-552 326-558 (606)
12 3rgz_A Protein brassinosteroid 99.8 4.5E-24 1.5E-28 229.2 -10.5 373 110-527 148-551 (768)
13 2z81_A CD282 antigen, TOLL-lik 99.8 2.4E-21 8.2E-26 201.0 8.6 196 297-527 310-510 (549)
14 4fmz_A Internalin; leucine ric 99.8 2.7E-20 9.4E-25 181.0 13.2 105 403-527 241-346 (347)
15 2z81_A CD282 antigen, TOLL-lik 99.8 1E-20 3.5E-25 196.2 10.1 419 74-555 26-513 (549)
16 1o6v_A Internalin A; bacterial 99.8 1.3E-20 4.4E-25 190.6 10.6 344 72-528 44-389 (466)
17 2z7x_B TOLL-like receptor 1, v 99.8 1.6E-21 5.3E-26 200.8 1.9 105 110-229 42-148 (520)
18 2z63_A TOLL-like receptor 4, v 99.8 7.2E-24 2.5E-28 221.2 -16.1 111 111-230 50-160 (570)
19 3vq2_A TLR4, TOLL-like recepto 99.8 2.6E-22 8.9E-27 210.8 -4.3 112 437-551 421-533 (606)
20 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-21 1.4E-25 197.7 0.8 156 343-527 321-481 (520)
21 4fmz_A Internalin; leucine ric 99.8 6.6E-19 2.3E-23 171.2 16.3 304 71-502 41-346 (347)
22 1o6v_A Internalin A; bacterial 99.8 1.3E-19 4.5E-24 183.3 11.5 340 112-549 45-385 (466)
23 2ca6_A RAN GTPase-activating p 99.8 5E-18 1.7E-22 167.3 22.2 212 295-547 92-338 (386)
24 2z63_A TOLL-like receptor 4, v 99.8 1.9E-22 6.6E-27 210.4 -11.5 113 69-202 47-159 (570)
25 1ziw_A TOLL-like receptor 3; i 99.8 3.4E-21 1.2E-25 205.1 -5.4 141 403-556 478-626 (680)
26 1ziw_A TOLL-like receptor 3; i 99.8 6.5E-21 2.2E-25 202.9 -4.0 85 111-202 71-155 (680)
27 3v47_A TOLL-like receptor 5B a 99.8 1.1E-20 3.8E-25 191.1 -2.4 363 113-528 30-409 (455)
28 4ecn_A Leucine-rich repeat pro 99.8 2.6E-20 9E-25 198.5 -1.9 85 162-252 489-582 (876)
29 4eco_A Uncharacterized protein 99.8 2.9E-20 9.9E-25 195.0 -2.9 111 136-253 204-340 (636)
30 3o6n_A APL1; leucine-rich repe 99.7 2E-19 7E-24 177.6 2.5 325 111-544 43-369 (390)
31 2ast_B S-phase kinase-associat 99.7 1.7E-17 5.6E-22 160.6 15.0 202 320-543 91-300 (336)
32 2ca6_A RAN GTPase-activating p 99.7 2.3E-16 8E-21 155.4 21.9 94 109-202 28-132 (386)
33 3j0a_A TOLL-like receptor 5; m 99.7 5.6E-20 1.9E-24 199.5 -6.8 393 72-527 22-464 (844)
34 3j0a_A TOLL-like receptor 5; m 99.7 1.8E-20 6E-25 203.5 -11.8 429 68-551 42-516 (844)
35 3v47_A TOLL-like receptor 5B a 99.7 3.4E-19 1.2E-23 180.1 -2.3 357 138-556 30-412 (455)
36 4ecn_A Leucine-rich repeat pro 99.7 6.3E-20 2.1E-24 195.6 -8.6 351 109-528 444-841 (876)
37 4eco_A Uncharacterized protein 99.7 4.2E-20 1.4E-24 193.7 -10.1 359 156-552 198-600 (636)
38 3oja_B Anopheles plasmodium-re 99.7 2.2E-18 7.6E-23 179.6 2.6 322 112-541 50-372 (597)
39 2id5_A Lingo-1, leucine rich r 99.7 1.6E-18 5.6E-23 176.1 1.3 180 113-357 32-211 (477)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.6E-18 1.6E-22 176.3 4.3 174 322-527 331-510 (562)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.8E-18 1.3E-22 177.0 1.8 391 113-554 52-512 (562)
42 3o6n_A APL1; leucine-rich repe 99.7 1.1E-17 3.8E-22 165.2 4.8 323 72-517 43-367 (390)
43 3bz5_A Internalin-J, INLJ; leu 99.7 3.2E-17 1.1E-21 164.3 5.2 205 70-356 38-243 (457)
44 3goz_A Leucine-rich repeat-con 99.7 5.6E-15 1.9E-19 143.9 20.5 90 441-530 197-300 (362)
45 3bz5_A Internalin-J, INLJ; leu 99.6 6.1E-17 2.1E-21 162.2 4.8 223 111-414 40-263 (457)
46 3oja_B Anopheles plasmodium-re 99.6 7.7E-17 2.6E-21 168.0 3.2 299 108-514 70-370 (597)
47 3goz_A Leucine-rich repeat-con 99.6 4.4E-14 1.5E-18 137.6 20.2 238 289-542 14-284 (362)
48 4g8a_A TOLL-like receptor 4; l 99.6 1.5E-17 5.1E-22 175.9 -6.5 132 75-230 53-184 (635)
49 2id5_A Lingo-1, leucine rich r 99.6 3.7E-17 1.3E-21 166.1 -5.3 309 138-535 32-342 (477)
50 1jl5_A Outer protein YOPM; leu 99.5 3.7E-15 1.3E-19 149.2 3.0 79 440-528 317-410 (454)
51 4g8a_A TOLL-like receptor 4; l 99.5 3.1E-16 1.1E-20 165.8 -7.7 115 67-203 69-184 (635)
52 3g06_A SSPH2 (leucine-rich rep 99.5 1.2E-14 4.2E-19 149.9 3.6 265 113-535 40-305 (622)
53 1xku_A Decorin; proteoglycan, 99.4 5.1E-15 1.7E-19 142.5 -0.7 59 114-178 32-90 (330)
54 3un9_A NLR family member X1; l 99.4 1.4E-12 4.8E-17 126.4 13.9 147 380-536 101-261 (372)
55 2z80_A TOLL-like receptor 2, v 99.4 3.1E-14 1E-18 138.4 2.2 66 462-528 247-315 (353)
56 3e4g_A ATP synthase subunit S, 99.4 5E-13 1.7E-17 111.9 8.5 104 440-545 61-173 (176)
57 1jl5_A Outer protein YOPM; leu 99.4 1E-13 3.5E-18 138.7 2.6 178 295-528 193-371 (454)
58 2ft3_A Biglycan; proteoglycan, 99.4 4.4E-15 1.5E-19 142.9 -7.2 86 438-525 239-331 (332)
59 2z80_A TOLL-like receptor 2, v 99.4 1.3E-13 4.4E-18 133.9 2.8 283 111-504 29-316 (353)
60 1xku_A Decorin; proteoglycan, 99.4 8.6E-14 2.9E-18 133.8 1.5 105 113-230 52-156 (330)
61 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-13 5.2E-18 141.8 2.5 260 74-505 40-300 (622)
62 3un9_A NLR family member X1; l 99.3 1.7E-11 5.9E-16 118.7 16.6 194 296-529 71-285 (372)
63 3o53_A Protein LRIM1, AGAP0063 99.3 1.9E-14 6.6E-19 137.3 -4.5 60 462-523 212-271 (317)
64 2ft3_A Biglycan; proteoglycan, 99.3 1.4E-13 4.8E-18 132.4 -3.5 105 113-230 54-158 (332)
65 3o53_A Protein LRIM1, AGAP0063 99.2 1.2E-13 4.2E-18 131.7 -5.1 106 105-230 26-131 (317)
66 3oja_A Leucine-rich immune mol 99.2 1.6E-13 5.6E-18 138.7 -4.5 58 462-521 212-269 (487)
67 1h6u_A Internalin H; cell adhe 99.2 3.2E-12 1.1E-16 121.1 4.5 191 295-528 39-231 (308)
68 3zyi_A Leucine-rich repeat-con 99.2 2.4E-12 8.1E-17 129.5 3.6 62 462-525 240-301 (452)
69 4fcg_A Uncharacterized protein 99.2 9.8E-14 3.3E-18 132.8 -6.5 106 438-548 204-310 (328)
70 4glp_A Monocyte differentiatio 99.2 1.6E-11 5.6E-16 116.6 7.6 186 295-530 115-310 (310)
71 2z66_A Variable lymphocyte rec 99.2 9.2E-14 3.1E-18 132.1 -8.3 63 438-502 197-261 (306)
72 1ozn_A Reticulon 4 receptor; N 99.2 4.1E-13 1.4E-17 126.1 -4.2 206 296-527 31-238 (285)
73 1wwl_A Monocyte differentiatio 99.2 2E-13 6.7E-18 130.0 -6.6 209 296-529 94-311 (312)
74 4fcg_A Uncharacterized protein 99.2 2.5E-12 8.6E-17 123.0 1.1 154 72-251 79-237 (328)
75 2z66_A Variable lymphocyte rec 99.2 1.9E-13 6.4E-18 130.0 -7.1 109 113-230 28-137 (306)
76 1ogq_A PGIP-2, polygalacturona 99.1 1.3E-13 4.3E-18 131.2 -10.2 108 114-230 51-160 (313)
77 3zyj_A Leucine-rich repeat-con 99.1 9.7E-13 3.3E-17 131.8 -5.2 204 295-526 86-291 (440)
78 3oja_A Leucine-rich immune mol 99.1 2.3E-12 7.9E-17 130.2 -2.6 209 294-541 55-264 (487)
79 3zyj_A Leucine-rich repeat-con 99.1 2.9E-12 1E-16 128.3 -2.0 130 113-252 64-194 (440)
80 3zyi_A Leucine-rich repeat-con 99.1 3.6E-12 1.2E-16 128.1 -1.4 130 113-252 75-205 (452)
81 1wwl_A Monocyte differentiatio 99.1 3.6E-13 1.2E-17 128.1 -8.9 205 320-550 93-307 (312)
82 1ogq_A PGIP-2, polygalacturona 99.1 1.7E-13 5.9E-18 130.3 -11.7 206 294-527 73-281 (313)
83 2ra8_A Uncharacterized protein 99.1 8.1E-10 2.8E-14 105.9 12.6 168 338-545 164-337 (362)
84 1io0_A Tropomodulin; LRR prote 99.1 2.6E-09 8.9E-14 92.4 14.2 126 396-530 27-167 (185)
85 4glp_A Monocyte differentiatio 99.1 1E-11 3.6E-16 117.9 -1.1 226 297-550 64-305 (310)
86 1ozn_A Reticulon 4 receptor; N 99.1 1.7E-11 6E-16 114.9 0.2 108 113-230 32-140 (285)
87 2ra8_A Uncharacterized protein 99.1 2E-10 6.7E-15 110.2 7.3 140 399-552 166-320 (362)
88 1h6u_A Internalin H; cell adhe 99.0 1.9E-10 6.5E-15 108.9 6.3 189 320-551 39-229 (308)
89 4ezg_A Putative uncharacterize 99.0 1.6E-10 5.4E-15 101.6 2.9 108 403-528 86-195 (197)
90 1h6t_A Internalin B; cell adhe 99.0 2.2E-10 7.5E-15 107.4 4.0 172 295-531 44-217 (291)
91 3e4g_A ATP synthase subunit S, 99.0 4.7E-10 1.6E-14 93.9 4.9 104 113-222 61-170 (176)
92 3rfs_A Internalin B, repeat mo 98.9 1.4E-10 4.9E-15 107.7 1.8 105 112-230 40-144 (272)
93 2z62_A TOLL-like receptor 4, v 98.9 4.4E-12 1.5E-16 118.5 -8.8 205 297-527 28-237 (276)
94 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 6.4E-10 2.2E-14 73.3 3.9 40 10-50 5-44 (53)
95 3rfs_A Internalin B, repeat mo 98.9 9.3E-11 3.2E-15 109.0 -1.8 178 295-527 39-218 (272)
96 1io0_A Tropomodulin; LRR prote 98.9 2.2E-08 7.6E-13 86.5 13.4 127 101-230 24-162 (185)
97 1m9s_A Internalin B; cell inva 98.9 1.4E-09 4.9E-14 112.0 6.7 170 295-529 41-212 (605)
98 4ezg_A Putative uncharacterize 98.9 1.3E-09 4.6E-14 95.6 4.9 127 403-550 64-192 (197)
99 2o6q_A Variable lymphocyte rec 98.9 5.9E-11 2E-15 110.2 -4.2 180 297-526 37-217 (270)
100 1p9a_G Platelet glycoprotein I 98.8 9.7E-11 3.3E-15 109.7 -4.0 110 403-527 98-208 (290)
101 2z62_A TOLL-like receptor 4, v 98.8 2.4E-10 8.2E-15 106.6 -2.6 110 111-229 50-159 (276)
102 1h6t_A Internalin B; cell adhe 98.8 3.3E-09 1.1E-13 99.3 4.3 125 402-551 87-212 (291)
103 2je0_A Acidic leucine-rich nuc 98.7 3E-09 1E-13 88.7 2.7 126 404-543 16-144 (149)
104 2je0_A Acidic leucine-rich nuc 98.7 2.7E-09 9.2E-14 89.0 2.1 63 111-178 40-102 (149)
105 1m9s_A Internalin B; cell inva 98.7 7.7E-09 2.6E-13 106.6 4.5 125 402-551 84-209 (605)
106 2ell_A Acidic leucine-rich nuc 98.7 1.6E-09 5.4E-14 92.5 -0.6 64 462-525 93-158 (168)
107 1dce_A Protein (RAB geranylger 98.7 2.8E-10 9.5E-15 116.6 -7.1 206 295-543 347-564 (567)
108 1p9a_G Platelet glycoprotein I 98.7 4E-09 1.4E-13 98.6 1.0 105 113-230 31-135 (290)
109 2o6q_A Variable lymphocyte rec 98.6 4.7E-09 1.6E-13 97.3 1.1 178 113-332 37-215 (270)
110 2ell_A Acidic leucine-rich nuc 98.6 3.2E-09 1.1E-13 90.6 -0.0 131 403-549 22-157 (168)
111 1xeu_A Internalin C; cellular 98.6 9.7E-09 3.3E-13 94.5 2.8 104 403-529 83-187 (263)
112 3m19_A Variable lymphocyte rec 98.6 9.8E-10 3.4E-14 100.7 -3.9 113 403-529 81-194 (251)
113 3sb4_A Hypothetical leucine ri 98.5 2.2E-08 7.6E-13 95.7 2.7 114 392-520 213-327 (329)
114 1pgv_A TMD-1, tropomodulin TMD 98.5 1.1E-06 3.8E-11 75.0 12.6 129 101-230 29-168 (197)
115 1xeu_A Internalin C; cellular 98.5 1.2E-07 4.2E-12 87.1 6.3 60 112-178 40-99 (263)
116 3m19_A Variable lymphocyte rec 98.5 2.6E-08 9E-13 91.1 1.7 108 113-230 35-142 (251)
117 2xwt_C Thyrotropin receptor; s 98.5 7.2E-09 2.5E-13 94.1 -2.4 197 113-356 31-236 (239)
118 2xwt_C Thyrotropin receptor; s 98.5 4.4E-09 1.5E-13 95.6 -4.3 59 296-355 30-89 (239)
119 3cvr_A Invasion plasmid antige 98.4 1.3E-08 4.4E-13 103.8 -1.8 128 381-535 121-251 (571)
120 1pgv_A TMD-1, tropomodulin TMD 98.4 1.2E-06 4.1E-11 74.8 10.3 124 394-526 30-169 (197)
121 1ds9_A Outer arm dynein; leuci 98.4 3.6E-08 1.2E-12 86.5 0.6 108 403-528 46-154 (198)
122 1a9n_A U2A', U2A'; complex (nu 98.4 2.9E-08 9.9E-13 85.2 -0.8 90 438-528 62-154 (176)
123 3e6j_A Variable lymphocyte rec 98.4 1.7E-08 5.8E-13 90.8 -2.6 110 403-527 62-172 (229)
124 1a9n_A U2A', U2A'; complex (nu 98.4 7.4E-08 2.5E-12 82.6 1.3 111 112-230 41-151 (176)
125 2o6s_A Variable lymphocyte rec 98.3 3.9E-08 1.3E-12 87.1 -2.5 111 403-527 50-161 (208)
126 1ds9_A Outer arm dynein; leuci 98.2 9.7E-08 3.3E-12 83.7 -0.8 109 403-528 68-186 (198)
127 2v70_A SLIT-2, SLIT homolog 2 98.2 1.4E-08 4.8E-13 90.7 -6.3 111 403-527 55-166 (220)
128 2v9t_B SLIT homolog 2 protein 98.2 1.8E-08 6.2E-13 90.0 -5.7 110 403-526 54-164 (220)
129 3e6j_A Variable lymphocyte rec 98.2 2.7E-07 9.4E-12 82.8 1.9 127 113-251 40-167 (229)
130 2o6s_A Variable lymphocyte rec 98.2 2.7E-07 9.1E-12 81.7 0.4 109 111-229 50-158 (208)
131 3cvr_A Invasion plasmid antige 98.2 3.3E-07 1.1E-11 93.4 1.2 59 297-356 180-240 (571)
132 2v9t_B SLIT homolog 2 protein 98.1 1.8E-07 6.1E-12 83.5 -2.0 84 112-202 55-138 (220)
133 2xot_A Amphoterin-induced prot 98.1 4.8E-07 1.6E-11 87.6 0.4 109 113-230 39-147 (361)
134 3sb4_A Hypothetical leucine ri 98.1 5.9E-07 2E-11 85.8 0.5 35 218-252 201-235 (329)
135 2v70_A SLIT-2, SLIT homolog 2 98.0 2.7E-07 9.1E-12 82.3 -2.4 85 111-202 55-139 (220)
136 3l2o_B F-box only protein 4; s 98.0 1.9E-06 6.5E-11 77.0 2.5 38 12-50 3-40 (312)
137 2xot_A Amphoterin-induced prot 98.0 1.5E-07 5.2E-12 91.1 -5.6 160 345-527 38-202 (361)
138 2o6r_A Variable lymphocyte rec 98.0 1.3E-06 4.5E-11 74.9 0.5 111 404-528 27-138 (177)
139 1w8a_A SLIT protein; signaling 97.9 1.1E-06 3.9E-11 76.3 -0.7 110 405-527 29-139 (192)
140 2e31_A FBS1, F-box only protei 97.9 7.1E-06 2.4E-10 74.5 3.9 39 11-50 48-87 (297)
141 2wfh_A SLIT homolog 2 protein 97.8 3E-06 1E-10 73.6 1.0 107 405-526 31-138 (193)
142 4b8c_D Glucose-repressible alc 97.8 4E-06 1.4E-10 88.7 2.1 109 402-528 221-330 (727)
143 1w8a_A SLIT protein; signaling 97.8 3.1E-06 1.1E-10 73.5 -0.2 109 113-230 29-137 (192)
144 1dce_A Protein (RAB geranylger 97.7 3.2E-05 1.1E-09 79.2 6.7 122 113-249 441-566 (567)
145 2wfh_A SLIT homolog 2 protein 97.7 6.1E-06 2.1E-10 71.6 1.1 107 113-230 31-137 (193)
146 2o6r_A Variable lymphocyte rec 97.7 6.5E-06 2.2E-10 70.5 0.9 108 113-230 28-135 (177)
147 3rw6_A Nuclear RNA export fact 97.7 2.5E-05 8.4E-10 70.7 4.3 90 457-549 163-259 (267)
148 4ay9_X Follicle-stimulating ho 97.6 3E-07 1E-11 88.7 -9.6 203 296-525 29-234 (350)
149 4ay9_X Follicle-stimulating ho 97.5 4.7E-07 1.6E-11 87.3 -10.0 15 295-309 200-214 (350)
150 4b8c_D Glucose-repressible alc 97.5 2.7E-05 9.1E-10 82.5 2.5 17 295-311 314-330 (727)
151 2r9u_A Variable lymphocyte rec 97.5 1.2E-05 4.1E-10 68.4 -0.6 85 440-527 33-118 (174)
152 3g39_A Variable lymphocyte rec 97.5 1.3E-05 4.5E-10 67.9 -0.5 85 440-527 30-115 (170)
153 3v7d_B Cell division control p 97.4 4.5E-05 1.5E-09 76.6 2.7 40 10-50 11-50 (464)
154 4fs7_A Uncharacterized protein 97.3 3.1E-06 1.1E-10 83.0 -7.1 35 110-146 68-102 (394)
155 3rw6_A Nuclear RNA export fact 97.3 0.00017 5.9E-09 65.2 4.7 58 461-520 193-257 (267)
156 1p22_A F-BOX/WD-repeat protein 97.2 0.00011 3.8E-09 73.0 2.9 40 10-50 7-50 (435)
157 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00013 4.4E-09 72.7 3.3 42 8-50 13-54 (445)
158 3g39_A Variable lymphocyte rec 97.1 0.00023 7.9E-09 60.1 3.5 63 113-178 30-92 (170)
159 2r9u_A Variable lymphocyte rec 97.1 0.00026 8.9E-09 60.0 3.5 62 113-178 33-95 (174)
160 4fs7_A Uncharacterized protein 97.1 8.8E-06 3E-10 79.7 -6.6 57 136-200 69-125 (394)
161 2ifg_A High affinity nerve gro 96.5 0.00031 1.1E-08 67.3 -0.6 63 462-527 54-116 (347)
162 4fdw_A Leucine rich hypothetic 96.5 0.00032 1.1E-08 68.4 -0.7 101 114-229 136-236 (401)
163 4gt6_A Cell surface protein; l 96.1 0.001 3.5E-08 65.0 0.4 80 437-525 285-368 (394)
164 4fdw_A Leucine rich hypothetic 95.9 0.0017 5.9E-08 63.2 0.9 77 269-354 296-378 (401)
165 2ifg_A High affinity nerve gro 95.9 0.0037 1.3E-07 59.7 3.0 84 111-202 29-113 (347)
166 3rfe_A Platelet glycoprotein I 82.6 0.43 1.5E-05 37.5 1.4 35 490-525 32-66 (130)
167 4gt6_A Cell surface protein; l 82.6 0.48 1.6E-05 45.8 2.0 12 216-227 331-342 (394)
168 4h09_A Hypothetical leucine ri 79.0 0.3 1E-05 46.9 -0.9 81 437-523 260-342 (379)
169 4h09_A Hypothetical leucine ri 71.1 0.97 3.3E-05 43.3 0.4 125 111-251 215-341 (379)
170 3rfe_A Platelet glycoprotein I 62.6 7.4 0.00025 30.3 4.0 14 165-178 32-45 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=9.7e-61 Score=502.87 Aligned_cols=567 Identities=57% Similarity=0.996 Sum_probs=503.3
Q ss_pred cccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhhcccceEEeccccccChHHHHhhCCCceEEEcCCCCccccCC
Q 008051 12 TSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILSVTLKGKPRFSDFN 91 (579)
Q Consensus 12 ~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 91 (579)
+.|++||+||+.+||+||+..+|+.++++|||+|+.+..+.|..+.+..++...+..+.+++++++++++++++.+.+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence 67999999999999999997799999999999999998788889999999999999999999999999999999888888
Q ss_pred CCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEec
Q 008051 92 LVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDI 171 (579)
Q Consensus 92 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l 171 (579)
..+..|+.....|+..+...+++|++|+++++.+++..+..+...+++|++|++.+|..++..++..+..+|++|++|++
T Consensus 84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 88999999999999999999999999999999999999999987899999999999988888889999889999999999
Q ss_pred cCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeeccc
Q 008051 172 QENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 172 ~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 251 (579)
++|.+++.+..++..+...+++|++|+++++.+.++...+..+...+++|++|++.++....+++..+..+++|++|+++
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 99999988888888888899999999999886558889999998999999999999998788899999999999999998
Q ss_pred ccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccC
Q 008051 252 SFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLD 331 (579)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 331 (579)
.+........+..+...+.+|++|+.+.+++......+..+...+++|++|++++|.+++..+..++..+++|+.|++.+
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 77765566667777778899999999977777777777777778999999999999988888888889999999999999
Q ss_pred ccChHHHHHHhccCCCCceEEEecCCCCc-chhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceE
Q 008051 332 TVEDRGLEAVGSSCPLLEELRVFPADPFD-EEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCF 410 (579)
Q Consensus 332 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L 410 (579)
+..+.++..+...+++|++|++.+|+... ..+.. +++.++..+..+|++|+.|.+.++.+++..+..+...+|+|+.|
T Consensus 324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~-l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA-LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC-CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCC-CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 88888888888889999999996543210 01233 88899999888899999999899999999999999899999999
Q ss_pred EeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCc
Q 008051 411 RLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPK 490 (579)
Q Consensus 411 ~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 490 (579)
++..++..+|+.++..+.+.++..++..+++|+.|++++.+++.++..+...+++|+.|++++|.+++.++..++.++++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 99955433477888888788999899999999999998888999999998889999999999999999999998888999
Q ss_pred CcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc-----cccccceeEEEEee
Q 008051 491 LRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES-----DDNQADKVYVYRTV 565 (579)
Q Consensus 491 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~-----~~~~~~~~~~~~~~ 565 (579)
|++|++++|.+++.++...+.++++|+.|++++|+++..|++.+...+|+++++++++... +...++++|+|++.
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEECS
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhhcc
Confidence 9999999999998888778888999999999999999999999999999999999998743 34566899999999
Q ss_pred cCCCCCCCCCcccC
Q 008051 566 AGPRKDAPPSVITL 579 (579)
Q Consensus 566 ~~~~~~~~~~~~~~ 579 (579)
.+||.++|+.++++
T Consensus 563 ~~~~~~~p~~~~~l 576 (594)
T 2p1m_B 563 AGPRFDMPGFVWNM 576 (594)
T ss_dssp SCSCSCCCTTEEEC
T ss_pred CCCCCCCCCceEec
Confidence 99999999988764
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.6e-58 Score=485.67 Aligned_cols=561 Identities=32% Similarity=0.603 Sum_probs=480.6
Q ss_pred cccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhhcccceEEeccccccChHHHHhhCCCceEEEcCCCCccccCC
Q 008051 12 TSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQLSRTHVFIGNCYAVSPEILTRRFPNILSVTLKGKPRFSDFN 91 (579)
Q Consensus 12 ~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 91 (579)
....+||+|+|.+||+||+..+|+.++++|||+|+.+..+.+..+.+..++...++.+.++++++++|++++++.+.+++
T Consensus 11 ~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 90 (592)
T 3ogk_B 11 LSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN 90 (592)
T ss_dssp -CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGT
T ss_pred hccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcc
Confidence 44558999999999999943899999999999999998888888888888888899999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCC-CcEEeecCCCCCChHHHHHHHhhCCCCCeEe
Q 008051 92 LVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPN-FKVLSLSSCDGFSTDGLAAIATNCKNLTELD 170 (579)
Q Consensus 92 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (579)
.+|..|+.+...++..+...+++|++|+|+++.+++..+..+...+++ |++|++.+|..++..++..+...|++|++|+
T Consensus 91 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (592)
T 3ogk_B 91 LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170 (592)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEE
T ss_pred cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEE
Confidence 999999999999999999999999999999999999988888866676 9999999997788888888888999999999
Q ss_pred ccCCCcccccccccccccccCCccceeecccccCC-CCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeec
Q 008051 171 IQENGIEDISGSWLSCFPESFTSLEVLNFANVNSE-VDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLG 249 (579)
Q Consensus 171 l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 249 (579)
+++|.+++.+..|+..++..+++|++|+++++... ++...+..++.++++|++|++.++. ..+++..+..+++|++|.
T Consensus 171 L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFC 249 (592)
T ss_dssp CTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEE
T ss_pred CccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhc
Confidence 99999888888888888889999999999977522 4578899999999999999999976 666788899999999999
Q ss_pred ccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEec
Q 008051 250 TGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWV 329 (579)
Q Consensus 250 l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 329 (579)
++.+....... .....+..+++|+.+. .+......++.+...+++|++|++++|.+++..+..++..+++|+.|++
T Consensus 250 l~~~~~~~~~~---~~~~~l~~~~~L~~L~-l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 250 GGSLNEDIGMP---EKYMNLVFPRKLCRLG-LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp ECBCCCCTTCT---TSSSCCCCCTTCCEEE-ETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred ccccccccchH---HHHHHhhccccccccC-ccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 97654332100 0111234566666664 2234455667777789999999999999888888888899999999999
Q ss_pred cCccChHHHHHHhccCCCCceEEEec--CCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCC
Q 008051 330 LDTVEDRGLEAVGSSCPLLEELRVFP--ADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNF 407 (579)
Q Consensus 330 ~~~~~~~~l~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L 407 (579)
.+++.+.++..+...+++|++|++++ .+...+..+..+++.++..+..+|++|++|.+.++.+++..+..+...+++|
T Consensus 326 ~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 405 (592)
T 3ogk_B 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL 405 (592)
T ss_dssp EGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC
T ss_pred cCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC
Confidence 98888889998888899999999993 0000000011288888888888899999998899999999999999889999
Q ss_pred ceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecc---cccChHHHHHHHhcccCcCeeeccccCCChHHHHHH
Q 008051 408 TCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLS---GLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCV 484 (579)
Q Consensus 408 ~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 484 (579)
+.|++.++. .|+.++..|.+.++..+...+++|+.|+++ +.+++.++..+...+++|+.|++++|.+++.++..+
T Consensus 406 ~~L~l~~~~--~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 406 CDFRLVLLD--REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp CEEEEEECS--CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred cEEEEeecC--CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 999998765 377899877778999999999999999995 358999999998889999999999999999999999
Q ss_pred HhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccc----------ccccc
Q 008051 485 LRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEA----------ESDDN 554 (579)
Q Consensus 485 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~----------~~~~~ 554 (579)
+.+|++|++|++++|++++.++...+..+++|+.|++++|++++.|++.+...+|.+++++++.. ..+..
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~ 563 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREME 563 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC---------------
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcCCc
Confidence 99999999999999999998888888999999999999999999999999999999999999875 33456
Q ss_pred ccceeEEEEeecCCCCCCCCCcccC
Q 008051 555 QADKVYVYRTVAGPRKDAPPSVITL 579 (579)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (579)
.++++|.|+++.||+.++|+.|.+|
T Consensus 564 ~~~~~~~~~~~~g~~~~~p~~~~~l 588 (592)
T 3ogk_B 564 HPAHILAYYSLAGQRTDCPTTVRVL 588 (592)
T ss_dssp CCCEEEEEECTTCSCSCCCTTCEEC
T ss_pred chhheEeeeecCCCccCCCCCeEec
Confidence 6789999999999999999999875
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=7.2e-30 Score=267.78 Aligned_cols=416 Identities=17% Similarity=0.193 Sum_probs=329.0
Q ss_pred HHHHHhcCCCCCeeeecCcc--------------cChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCC-CCeE
Q 008051 105 LVAFADRYPSLEELRLKRMS--------------VSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKN-LTEL 169 (579)
Q Consensus 105 l~~l~~~~~~L~~L~l~~~~--------------i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L 169 (579)
...+..++++|++|+++++. .....+..+...+++|++|+++++ .+++..+..+...+++ |++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEE
Confidence 44566789999999997642 233457777779999999999999 7888888877766776 9999
Q ss_pred eccCCC-cccccccccccccccCCccceeecccccC-CCCHHHHHHHHHhCCCCCeeEecCccC----hHHHHHHHhhCC
Q 008051 170 DIQENG-IEDISGSWLSCFPESFTSLEVLNFANVNS-EVDFDALEKLVSRCKSLKDLKVNKSIS----LEQLQKLLVLAP 243 (579)
Q Consensus 170 ~l~~~~-i~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~l~~~~~~~~ 243 (579)
++++|. +++.+ +..+...+++|++|+++++.- ......+..+...+++|++|+++++.. ...+..++..++
T Consensus 144 ~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999985 33322 444455789999999998741 113334677788999999999987762 467888899999
Q ss_pred CCeeecccccccccChhhHHHHHHHHhcCcccccccCc--ccc-ccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHc
Q 008051 244 QLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGL--WQA-TALYFPALSPVCANLTFLNLSYATLGSSELVKLLMH 320 (579)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~--~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~ 320 (579)
+|+.|++..+.... +...+..+++|+.|... ... ...........+++|+.++++++. ...+..++..
T Consensus 221 ~L~~L~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~ 291 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPF 291 (592)
T ss_dssp TCCEEECSSCBGGG-------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGG
T ss_pred CCcEEeccCccHHH-------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhh
Confidence 99999998744322 34557778899988722 111 111122233467899999998753 3334456678
Q ss_pred CCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhc-----------
Q 008051 321 CPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYF----------- 388 (579)
Q Consensus 321 ~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~----------- 388 (579)
+++|+.|+++++ +.+.++..+...+++|+.|++..+ +++.++..+..+|++|++|.+.
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~----------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV----------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG----------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc----------cCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 999999999975 577777677788999999999832 8888888888889999999777
Q ss_pred CcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecc----c-ccCh----HHHHHH
Q 008051 389 CQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLS----G-LLTD----LTFEYI 459 (579)
Q Consensus 389 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~----~-~~~~----~~~~~~ 459 (579)
|+.+++.++..+...|++|+.|.+. |+.++ +.++..+...+++|+.|+++ . .+++ .++..+
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~------~~~l~----~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVY------VSDIT----NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEE------ESCCC----HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred cCccCHHHHHHHHhhCccCeEEEee------cCCcc----HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 7899999999999899999999995 44577 77888888889999999995 2 4554 578888
Q ss_pred HhcccCcCeeeccccC--CChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhc
Q 008051 460 GQYAKNLELLSVAFAG--SSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASK 537 (579)
Q Consensus 460 ~~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~ 537 (579)
...+++|+.|++++|. +++.++..+...+++|++|++++|.+++.++...+..|++|++|++++|++++.++..+...
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 8889999999998765 89999999988899999999999999998888889999999999999999999999999889
Q ss_pred CCCceEEEeccccccc
Q 008051 538 KPRLNVEVIKEAESDD 553 (579)
Q Consensus 538 ~p~l~~~~~~~~~~~~ 553 (579)
+|+++.-.+.++....
T Consensus 512 l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSSCCEEEEESCBCCT
T ss_pred cCccCeeECcCCcCCH
Confidence 9999988888876433
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=1.4e-29 Score=265.83 Aligned_cols=412 Identities=19% Similarity=0.226 Sum_probs=325.6
Q ss_pred HHHHhhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCc-ccChHHHHHHHhhCCCCcEEee
Q 008051 67 EILTRRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRM-SVSDESLEFLAVSFPNFKVLSL 145 (579)
Q Consensus 67 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l 145 (579)
..+...+++|++|+++++. +. ...+..+...+++|++|+++++ .+++..+..+...+++|++|++
T Consensus 98 ~~l~~~~~~L~~L~L~~~~-~~-------------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMV-VT-------------DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp HHHHHHCTTCCEEEEESCB-CC-------------HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhCCCCCeEEeeCcE-Ec-------------HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 4567889999999999873 22 2335666667999999999998 5888888888889999999999
Q ss_pred cCCCCCCh---HHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCC
Q 008051 146 SSCDGFST---DGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLK 222 (579)
Q Consensus 146 ~~~~~~~~---~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 222 (579)
++|. +++ ..+..+...+++|++|++++|. .......+..+...+++|++|+++++. ....++.++..+++|+
T Consensus 164 ~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~~~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 164 RESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV---PLEKLATLLQRAPQLE 238 (594)
T ss_dssp TTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS---CHHHHHHHHHHCTTCS
T ss_pred cCCc-cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC---cHHHHHHHHhcCCcce
Confidence 9884 433 2244555578999999999986 223333355555568999999999873 5555888899999999
Q ss_pred eeEecCcc------ChHHHHHHHhhCCCCeeec-ccccccccChhhHHHHHHHHhcCccccccc-CccccccchHhhhhh
Q 008051 223 DLKVNKSI------SLEQLQKLLVLAPQLVDLG-TGSFSQELTDDQRAELESAFNKCKNIHKLS-GLWQATALYFPALSP 294 (579)
Q Consensus 223 ~L~l~~~~------~~~~l~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~-~~~~~~~~~l~~~~~ 294 (579)
+|.+..+. .+.++...+..+++|+.+. +..... ..+......+++|+.|. ....++...+..+..
T Consensus 239 ~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp EEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT
T ss_pred EcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh
Confidence 99987664 2445666778999999983 322111 11222334678899887 333366666777777
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccC----------ccChHHHHHHhccCCCCceEEEecCCCCcchhc
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLD----------TVEDRGLEAVGSSCPLLEELRVFPADPFDEEIT 364 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 364 (579)
.+++|++|++++| +.+..+..+...+++|+.|++.+ .+++.++..+...+++|+.|.+...
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-------- 382 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-------- 382 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES--------
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC--------
Confidence 8999999999998 77778888888899999999932 4778888888888999999977632
Q ss_pred ccchhHHHHHHHcCCCcchhhhhc------CcCCC----HHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHH
Q 008051 365 YGVTEAGFLAVSHGCPRLQYVLYF------CQAMT----NAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGA 434 (579)
Q Consensus 365 ~~~~~~~~~~l~~~~~~L~~L~~~------~~~~~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~ 434 (579)
. +++.++..+...|++|+.|.+. |+.++ +.++..+...+++|+.|++++ .++ +.++..
T Consensus 383 ~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-------~l~----~~~~~~ 450 (594)
T 2p1m_B 383 Q-MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-------LLT----DKVFEY 450 (594)
T ss_dssp C-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-------SCC----HHHHHH
T ss_pred C-cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-------ccc----HHHHHH
Confidence 3 8888888888889999999554 57788 788888888999999999964 356 777777
Q ss_pred HHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcC
Q 008051 435 VVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKC 513 (579)
Q Consensus 435 ~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 513 (579)
+...+++|+.|++++ .+++.++..+...+++|+.|++++|.+++.++..++..+++|++|++++|++++.++..+...+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 777799999999988 5889999888888999999999999999988888888899999999999999998887776889
Q ss_pred CCCcEEEecccc
Q 008051 514 ESMRSLWMSACN 525 (579)
Q Consensus 514 ~~L~~L~l~~~~ 525 (579)
|+|+...+.++.
T Consensus 531 p~l~i~~~~~~~ 542 (594)
T 2p1m_B 531 PKLNVEVIDERG 542 (594)
T ss_dssp TTEEEEEECSSS
T ss_pred CCCEEEEecCCC
Confidence 999887777664
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-28 Score=249.25 Aligned_cols=392 Identities=17% Similarity=0.182 Sum_probs=268.8
Q ss_pred HHHHHhcCCCCCeeeecCcccChHHHHHH---HhhCCCCcEEeecCCCCCChHHHHHHHhhCC----CCCeEeccCCCcc
Q 008051 105 LVAFADRYPSLEELRLKRMSVSDESLEFL---AVSFPNFKVLSLSSCDGFSTDGLAAIATNCK----NLTELDIQENGIE 177 (579)
Q Consensus 105 l~~l~~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~----~L~~L~l~~~~i~ 177 (579)
+..+...+++|++|+++++.+++.....+ ...+++|++|+++++ .+++.++..+...++ +|++|++++|.++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 44445667788888888877776644333 335677888888877 576666666666565 6888888888777
Q ss_pred cccccccccccccCCccceeecccccCCCCHHHHHHHHHh----CCCCCeeEecCccC----hHHHHHHHhhCCCCeeec
Q 008051 178 DISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSR----CKSLKDLKVNKSIS----LEQLQKLLVLAPQLVDLG 249 (579)
Q Consensus 178 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~----~~~L~~L~l~~~~~----~~~l~~~~~~~~~L~~L~ 249 (579)
+.+...+......+++|++|+++++. ++......+... .++|++|+++++.- ...+...+..+++|++|+
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHccCCceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 66654454445567778888887764 555555444332 34688888877751 123455556666666666
Q ss_pred ccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhh----hcCCCCCeeeeccccCCcHH---HHHHHHcCC
Q 008051 250 TGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALS----PVCANLTFLNLSYATLGSSE---LVKLLMHCP 322 (579)
Q Consensus 250 l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~----~~~~~L~~L~l~~~~~~~~~---l~~~~~~~~ 322 (579)
+.... ++......+. ...++|++|++++|.++... +...+..++
T Consensus 177 L~~n~-----------------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 177 VSNND-----------------------------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp CCSSB-----------------------------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred CcCCC-----------------------------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 54322 2222222222 23568999999999876654 445566889
Q ss_pred cCcEEeccCc-cChHHHHHHh----ccCCCCceEEEecCCCCcchhcccchhHHH---HHHHcCCCcchhhhhcCcCCCH
Q 008051 323 LLKRLWVLDT-VEDRGLEAVG----SSCPLLEELRVFPADPFDEEITYGVTEAGF---LAVSHGCPRLQYVLYFCQAMTN 394 (579)
Q Consensus 323 ~L~~L~l~~~-~~~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~l~~~~~~L~~L~~~~~~~~~ 394 (579)
+|+.|+++++ +.+.++..+. ..+++|+.|+++++. +++.+. ......+++|++|.+..+.+++
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~---------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG---------ITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC---------CCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC---------CCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 9999999875 5555554443 357899999999653 777653 3334458999999888888988
Q ss_pred HHHHHHHHh----CCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhc----ccC
Q 008051 395 AAVATIVRN----CPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQY----AKN 465 (579)
Q Consensus 395 ~~l~~l~~~----~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~----~~~ 465 (579)
.+...+... .++|+.|+++++. ++... ...+...+..+++|+.|++++ .+++.+...+... .++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~------l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCS------FTAAC-CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSC------CBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHhccCCccceeeEcCCCC------CchHH-HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 887777654 3699999998764 44110 123455667789999999988 5787777766543 579
Q ss_pred cCeeeccccCCChHHHHHH---HhCCCcCcEEEecCCCCCHHHHHHHHhcC----CCCcEEEecccccC---hhHHHHHh
Q 008051 466 LELLSVAFAGSSDWGMQCV---LRGCPKLRKFEIRDCPFGDAALLSGLDKC----ESMRSLWMSACNVT---MDGCKLLA 535 (579)
Q Consensus 466 L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~i~---~~~~~~l~ 535 (579)
|+.|++++|.+++.++..+ +..+++|++|++++|++++.++..+.+.+ .+|+.|++.++.++ ...++.+.
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~ 451 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh
Confidence 9999999999998665544 44589999999999999988776655433 46999999888865 45677788
Q ss_pred hcCCCceEE
Q 008051 536 SKKPRLNVE 544 (579)
Q Consensus 536 ~~~p~l~~~ 544 (579)
+..|+++|.
T Consensus 452 ~~~p~l~i~ 460 (461)
T 1z7x_W 452 KDKPSLRVI 460 (461)
T ss_dssp HHCTTSEEE
T ss_pred ccCCCcEee
Confidence 889998763
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.1e-27 Score=241.09 Aligned_cols=380 Identities=18% Similarity=0.185 Sum_probs=279.1
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHH---HHHHHhhCCCCCeEeccCCCccccccccccc-cc
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDG---LAAIATNCKNLTELDIQENGIEDISGSWLSC-FP 188 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-l~ 188 (579)
++|++|+++++.+++..+..+...+++|++|++++| .++..+ +...+..+++|++|++++|.+++.+...+.. +.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578899999999999888887778999999999999 687753 4556667899999999999988766544332 22
Q ss_pred ccCCccceeecccccCCCCH---HHHHHHHHhCCCCCeeEecCccChHH-HHHHH----hhCCCCeeecccccccccChh
Q 008051 189 ESFTSLEVLNFANVNSEVDF---DALEKLVSRCKSLKDLKVNKSISLEQ-LQKLL----VLAPQLVDLGTGSFSQELTDD 260 (579)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~-l~~~~----~~~~~L~~L~l~~~~~~~~~~ 260 (579)
...++|++|+++++. ++. ..++..+..+++|++|+++++.-... ...+. ...++|++|++.......
T Consensus 82 ~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--- 156 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA--- 156 (461)
T ss_dssp STTCCCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG---
T ss_pred hCCCceeEEEccCCC--CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH---
Confidence 122279999999884 554 45666678899999999999873222 22222 124567777765332211
Q ss_pred hHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHH----cCCcCcEEeccCc-cCh
Q 008051 261 QRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLM----HCPLLKRLWVLDT-VED 335 (579)
Q Consensus 261 ~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~----~~~~L~~L~l~~~-~~~ 335 (579)
.....+......+++|++|++++|.+++.....+.. ..++|+.|+++++ +.+
T Consensus 157 -----------------------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 157 -----------------------ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp -----------------------GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred -----------------------HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 111223344456899999999999987776665544 4569999999975 555
Q ss_pred HH---HHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHH----cCCCcchhhhhcCcCCCHHHHHHHH---HhCC
Q 008051 336 RG---LEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVS----HGCPRLQYVLYFCQAMTNAAVATIV---RNCP 405 (579)
Q Consensus 336 ~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~----~~~~~L~~L~~~~~~~~~~~l~~l~---~~~~ 405 (579)
.+ +......+++|++|+++++ . +++.++..+. ..+++|++|.+..+.+++.+...+. ..++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n--------~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSN--------K-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSS--------B-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCccEEeccCC--------c-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 44 3333456899999999955 3 7777765554 3588999998888899998755544 3689
Q ss_pred CCceEEeeccCCCCCCccCCCccchHHHHHHhc----Ccccceeeccc-ccChHHHHH---HHhcccCcCeeeccccCCC
Q 008051 406 NFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRT----CTNLQRLSLSG-LLTDLTFEY---IGQYAKNLELLSVAFAGSS 477 (579)
Q Consensus 406 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~L~~L~l~~-~~~~~~~~~---~~~~~~~L~~L~l~~~~i~ 477 (579)
+|+.|+++++. ++ +.+...+... .++|+.|++++ .+++.+... ....+++|+.|++++|.++
T Consensus 285 ~L~~L~Ls~n~------i~----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 285 SLKELSLAGNE------LG----DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp TCCEEECTTCC------CH----HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CcceEECCCCC------Cc----hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 99999998754 54 4444444332 36999999998 467665443 3456799999999999999
Q ss_pred hHHHHHHHhC----CCcCcEEEecCCCCCHHH---HHHHHhcCCCCcEEEecccccChhHHHHHhhcCCC
Q 008051 478 DWGMQCVLRG----CPKLRKFEIRDCPFGDAA---LLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPR 540 (579)
Q Consensus 478 ~~~~~~l~~~----~~~L~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~ 540 (579)
+.++..+... +++|++|++++|.+++.+ +...+..+++|+.|++++|+++..|+..+...+|.
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 8887766553 679999999999999743 45667789999999999999999999998876654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=5.2e-25 Score=213.42 Aligned_cols=288 Identities=19% Similarity=0.232 Sum_probs=154.0
Q ss_pred CCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh--cccceEEeccccccChHHHHhhCCCceEEEcCCCCcc
Q 008051 10 QNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ--LSRTHVFIGNCYAVSPEILTRRFPNILSVTLKGKPRF 87 (579)
Q Consensus 10 ~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 87 (579)
+...|++||+|++.+||+||+ .+|+.+++.|||+|+.++. ..|+.+.+.... .. +......
T Consensus 5 ~~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~-~~-~~~~~~~-------------- 67 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-LH-PDVTGRL-------------- 67 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCB-CC-HHHHHHH--------------
T ss_pred ccCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeecccccc-CC-HHHHHhh--------------
Confidence 457799999999999999999 8999999999999999963 223333332211 11 1111222
Q ss_pred ccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCC
Q 008051 88 SDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLT 167 (579)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 167 (579)
..++++.|+++++.+...... + ..+++|++|+++++ .++..++...+..+++|+
T Consensus 68 -----------------------~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 68 -----------------------LSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp -----------------------HHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCS
T ss_pred -----------------------hhccceEEEcCCccccccchh-h-ccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCC
Confidence 014455555555443322111 1 13455666666655 355444555555566666
Q ss_pred eEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCee
Q 008051 168 ELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVD 247 (579)
Q Consensus 168 ~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 247 (579)
+|++++|.+++.....+. .+++|++|+++++. .++...++..+..+++|++|+++++..+.
T Consensus 122 ~L~L~~~~l~~~~~~~l~----~~~~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~-------------- 182 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLA----KNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFT-------------- 182 (336)
T ss_dssp EEECTTCBCCHHHHHHHT----TCTTCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCC--------------
T ss_pred EEeCcCcccCHHHHHHHh----cCCCCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCCCCcC--------------
Confidence 666666554433222221 24556666665552 25666666667777888888877772111
Q ss_pred ecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCC-CCCeeeeccc--cCCcHHHHHHHHcCCcC
Q 008051 248 LGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCA-NLTFLNLSYA--TLGSSELVKLLMHCPLL 324 (579)
Q Consensus 248 L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~--~~~~~~l~~~~~~~~~L 324 (579)
...+......++ +|++|++++| .+++..+...+..+++|
T Consensus 183 --------------------------------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 183 --------------------------------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp --------------------------------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred --------------------------------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 111222233455 6666666666 35555555555666666
Q ss_pred cEEeccCc--cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHH
Q 008051 325 KRLWVLDT--VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVR 402 (579)
Q Consensus 325 ~~L~l~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~ 402 (579)
+.|+++++ +++..+..+ ..+++|+.|++++|.. +++.++..+. .+++|+.|.+... +++..+..+..
T Consensus 225 ~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~--------~~~~~~~~l~-~~~~L~~L~l~~~-i~~~~~~~l~~ 293 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYD--------IIPETLLELG-EIPTLKTLQVFGI-VPDGTLQLLKE 293 (336)
T ss_dssp SEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTT--------CCGGGGGGGG-GCTTCCEEECTTS-SCTTCHHHHHH
T ss_pred CEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCC--------CCHHHHHHHh-cCCCCCEEeccCc-cCHHHHHHHHh
Confidence 66666654 234444333 3456777777765421 3333332222 2555555533333 44444444444
Q ss_pred hCCCCc
Q 008051 403 NCPNFT 408 (579)
Q Consensus 403 ~~~~L~ 408 (579)
.++.|+
T Consensus 294 ~l~~L~ 299 (336)
T 2ast_B 294 ALPHLQ 299 (336)
T ss_dssp HSTTSE
T ss_pred hCcceE
Confidence 444433
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=6.4e-24 Score=223.07 Aligned_cols=136 Identities=19% Similarity=0.117 Sum_probs=72.5
Q ss_pred HhhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCC
Q 008051 70 TRRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCD 149 (579)
Q Consensus 70 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 149 (579)
+..+++|++|+++++.... ..+.. ...+++|++|+++++.+.......+. .+++|++|+++++
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~---~~~~~------------~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n- 115 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYW---IHEDT------------FQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQT- 115 (606)
T ss_dssp STTCTTCSEEECTTCCCCE---ECTTT------------TTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTS-
T ss_pred hccCccceEEECCCCccce---eChhh------------ccCccccCeeeCCCCcccccChhhhc-ccccccEeecccc-
Confidence 4556667777777653211 11111 13567777777777765543222222 5667777777776
Q ss_pred CCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCC--eeEec
Q 008051 150 GFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLK--DLKVN 227 (579)
Q Consensus 150 ~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~--~L~l~ 227 (579)
.++... ...+..+++|++|++++|.+.......+ . .+++|++|+++++. +... .+..+..+++|+ .|+++
T Consensus 116 ~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~-~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 116 GISSID-FIPLHNQKTLESLYLGSNHISSIKLPKG---F-PTEKLKVLDFQNNA--IHYL-SKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CCSCGG-GSCCTTCTTCCEEECCSSCCCCCCCCTT---C-CCTTCCEEECCSSC--CCEE-CHHHHHTTTTCCSEEEECT
T ss_pred CcccCC-cchhccCCcccEEECCCCcccccCcccc---c-CCcccCEEEcccCc--cccc-ChhhhhhhcccceeEEecC
Confidence 444311 1123467777777777776655432211 1 25677777777663 2211 122245666666 55555
Q ss_pred Ccc
Q 008051 228 KSI 230 (579)
Q Consensus 228 ~~~ 230 (579)
++.
T Consensus 188 ~n~ 190 (606)
T 3t6q_A 188 GND 190 (606)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.6e-24 Score=232.79 Aligned_cols=405 Identities=17% Similarity=0.117 Sum_probs=202.6
Q ss_pred hcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHH--HHHhhCCCCCeEeccCCCcccccccccccc
Q 008051 110 DRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLA--AIATNCKNLTELDIQENGIEDISGSWLSCF 187 (579)
Q Consensus 110 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 187 (579)
..+++|++|+++++.+.......+...+++|++|+++++ .++..... ....++++|++|++++|.+.....
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------ 195 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD------ 195 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB------
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC------
Confidence 456777777777765432221112135667777777776 44332111 124567777777777776553221
Q ss_pred cccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHH
Q 008051 188 PESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELES 267 (579)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 267 (579)
...+++|++|+++++. +.. .++. +..+++|++|+++++.-...++..+..+++|+.|++...........
T Consensus 196 ~~~l~~L~~L~Ls~n~--l~~-~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~------ 265 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNN--FST-GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------ 265 (768)
T ss_dssp CTTCTTCCEEECCSSC--CCS-CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC------
T ss_pred cccCCcCCEEECcCCc--CCC-CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc------
Confidence 1356777777777663 221 1111 45677777777777763334556667777777777765433211000
Q ss_pred HHhcCcccccccC-ccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccC
Q 008051 268 AFNKCKNIHKLSG-LWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSC 345 (579)
Q Consensus 268 ~~~~~~~L~~L~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~ 345 (579)
..+++|+.|.. ...+.......+...+++|++|++++|.+.... ...+..+++|+.|+++++ +...........+
T Consensus 266 --~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 266 --LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp --CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred --cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 13445555541 111111111111122355555555555422110 011234455555555442 1101101111234
Q ss_pred CCCceEEEecCCCCcc-h----------------hcccchhHHHHHHH-cCCCcchhhhhcCcCCCHHHHHHHHHhCCCC
Q 008051 346 PLLEELRVFPADPFDE-E----------------ITYGVTEAGFLAVS-HGCPRLQYVLYFCQAMTNAAVATIVRNCPNF 407 (579)
Q Consensus 346 ~~L~~L~l~~~~~~~~-~----------------~~~~~~~~~~~~l~-~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L 407 (579)
++|+.|+++++..... . .+. +++.....+. ..+++|++|.+..+.++......+ ..+++|
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L 420 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSEL 420 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCC
Confidence 4455555543311000 0 000 1111000000 014456666554444432212222 356777
Q ss_pred ceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHh
Q 008051 408 TCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLR 486 (579)
Q Consensus 408 ~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 486 (579)
+.|+++++. ++.... ..+..+++|+.|+++++ +... +......+++|+.|++++|.++... ...+.
T Consensus 421 ~~L~Ls~N~------l~~~~p-----~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~ 487 (768)
T 3rgz_A 421 VSLHLSFNY------LSGTIP-----SSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEI-PSGLS 487 (768)
T ss_dssp CEEECCSSE------EESCCC-----GGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCC-CGGGG
T ss_pred CEEECcCCc------ccCccc-----HHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEEEecCCcccCcC-CHHHh
Confidence 777777643 221111 12345778888888763 3321 1122345678888888888775422 22346
Q ss_pred CCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 487 GCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 487 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
++++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ ..+++++.-.+..++.
T Consensus 488 ~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLF 550 (768)
T ss_dssp GCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEE
T ss_pred cCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECCCCcc
Confidence 678888888888887754 45667788888888888888653322222 3567777766666643
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=7e-24 Score=222.78 Aligned_cols=154 Identities=16% Similarity=0.046 Sum_probs=104.5
Q ss_pred CCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCCh
Q 008051 74 PNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFST 153 (579)
Q Consensus 74 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 153 (579)
+.+++|+++++... . +.+.. ...+++|++|+++++.+.......+. .+++|++|+++++ .++.
T Consensus 33 ~~l~~L~Ls~n~i~-~--~~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~l~~ 95 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-T--IQNTT------------FSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTAN-PLIF 95 (606)
T ss_dssp TTCCEEECTTCCCS-E--ECTTT------------STTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTC-CCSE
T ss_pred CcCcEEEccCCccC-c--CChhH------------hccCccceEEECCCCccceeChhhcc-CccccCeeeCCCC-cccc
Confidence 35899999987432 1 11111 14689999999999987654333444 7889999999998 4543
Q ss_pred HHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChH
Q 008051 154 DGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLE 233 (579)
Q Consensus 154 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 233 (579)
. .+..+..+++|++|++++|.++......+ ..+++|++|+++++. +..-..+.. ..+++|++|+++++.-..
T Consensus 96 ~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~----~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 96 M-AETALSGPKALKHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNH--ISSIKLPKG-FPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp E-CTTTTSSCTTCCEEECTTSCCSCGGGSCC----TTCTTCCEEECCSSC--CCCCCCCTT-CCCTTCCEEECCSSCCCE
T ss_pred c-ChhhhcccccccEeeccccCcccCCcchh----ccCCcccEEECCCCc--ccccCcccc-cCCcccCEEEcccCcccc
Confidence 1 12344579999999999998877543333 367899999999874 332111222 248999999999986322
Q ss_pred HHHHHHhhCCCCe--eecccc
Q 008051 234 QLQKLLVLAPQLV--DLGTGS 252 (579)
Q Consensus 234 ~l~~~~~~~~~L~--~L~l~~ 252 (579)
..+..+..+++|+ .|++..
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTT
T ss_pred cChhhhhhhcccceeEEecCC
Confidence 2355677888888 665544
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=1.8e-23 Score=219.60 Aligned_cols=228 Identities=14% Similarity=0.044 Sum_probs=111.5
Q ss_pred cCCCCCeeeecccc-CCcHHHHHHHHcCCcCcEEeccCc-cChHH-HHHHhccCCCCceEEEecCCCCcchhcccchhHH
Q 008051 295 VCANLTFLNLSYAT-LGSSELVKLLMHCPLLKRLWVLDT-VEDRG-LEAVGSSCPLLEELRVFPADPFDEEITYGVTEAG 371 (579)
Q Consensus 295 ~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 371 (579)
.+++|++|++++|. .... .+..+++|+.|+++++ +.... .......+++|+.|+++++. ++...
T Consensus 326 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~---------l~~~~ 392 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---------AIIMS 392 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS---------EEEEC
T ss_pred CCCccceeeccCCcCccch----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc---------cccch
Confidence 45555555555553 1111 1224556666666543 11110 01112345666666666442 22111
Q ss_pred HHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-
Q 008051 372 FLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL- 450 (579)
Q Consensus 372 ~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~- 450 (579)
.....+++|+.|.+..+.+...........+++|+.|+++++.. .... ...+..+++|+.|+++++
T Consensus 393 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~~-----~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 393 --ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT------KIDF-----DGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp --CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC------EECC-----TTTTTTCTTCCEEECTTCE
T ss_pred --hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC------Cccc-----hhhhcCCCCCCEEECCCCc
Confidence 11223556666655444433322111223566677777765432 2111 012235667777777663
Q ss_pred cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhH
Q 008051 451 LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDG 530 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 530 (579)
+++..+......+++|+.|++++|.++... ...+.++++|++|++++|.+++. .+..+.++++|+.|++++|+++.-.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCcccC
Confidence 333222222345677777777777765422 12235567777777777766653 2455666777777777777765211
Q ss_pred HHHHhhcCC-CceEEEecccccc
Q 008051 531 CKLLASKKP-RLNVEVIKEAESD 552 (579)
Q Consensus 531 ~~~l~~~~p-~l~~~~~~~~~~~ 552 (579)
.. ...+| +++.-.+.+++..
T Consensus 538 ~~--~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 538 GI--LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp SC--GGGSCTTCCEEECCSCCCC
T ss_pred Hh--HhhhcccCcEEEccCCCcc
Confidence 11 23444 3665556555443
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=4.5e-24 Score=229.24 Aligned_cols=373 Identities=17% Similarity=0.137 Sum_probs=224.1
Q ss_pred hcCCCCCeeeecCcccChHHHHHH--HhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccc
Q 008051 110 DRYPSLEELRLKRMSVSDESLEFL--AVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCF 187 (579)
Q Consensus 110 ~~~~~L~~L~l~~~~i~~~~l~~l--~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 187 (579)
..+++|++|+++++.++......+ ...+++|++|+++++. ++.. ... ..+++|++|++++|.+..... .
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~--~~~-~~l~~L~~L~Ls~n~l~~~~~----~- 218 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGD--VDV-SRCVNLEFLDVSSNNFSTGIP----F- 218 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESC--CBC-TTCTTCCEEECCSSCCCSCCC----B-
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-cccc--CCc-ccCCcCCEEECcCCcCCCCCc----c-
Confidence 357899999999998765433332 3478899999999873 3221 111 478999999999998665322 1
Q ss_pred cccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccC-hhhHHHHH
Q 008051 188 PESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELT-DDQRAELE 266 (579)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~ 266 (579)
...+++|++|+++++. ++. .++..+..+++|++|+++++.....++.. .+++|++|++........ +..
T Consensus 219 l~~l~~L~~L~Ls~n~--l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~----- 288 (768)
T 3rgz_A 219 LGDCSALQHLDISGNK--LSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF----- 288 (768)
T ss_dssp CTTCCSCCEEECCSSC--CCS-CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC-----
T ss_pred cccCCCCCEEECcCCc--CCC-cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH-----
Confidence 3367899999999874 332 23344578899999999887622111111 567777777765432210 000
Q ss_pred HHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cC---hHHHHHH-
Q 008051 267 SAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VE---DRGLEAV- 341 (579)
Q Consensus 267 ~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~---~~~l~~~- 341 (579)
....|++|+.|......-....+.....+++|++|++++|.+........+..+++|+.|+++++ +. ...+...
T Consensus 289 -~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 289 -LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp -SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred -HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence 01123555555411111111122223355666666666665332111122345566666666543 11 1111111
Q ss_pred ---------------------h-ccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHH
Q 008051 342 ---------------------G-SSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVAT 399 (579)
Q Consensus 342 ---------------------~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~ 399 (579)
. ..+++|+.|+++++. +++. +......+++|+.|.+..+.++......
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~---------l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG---------FTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE---------EEEE-CCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc---------cccc-cCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 0 114567777766442 2221 1112345889999987776665433333
Q ss_pred HHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCCh
Q 008051 400 IVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSD 478 (579)
Q Consensus 400 l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 478 (579)
+ ..+++|+.|+++++.. ..... ..+..+++|+.|+++++ ++.. +......+++|+.|++++|.+++
T Consensus 438 l-~~l~~L~~L~L~~n~l------~~~~p-----~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 438 L-GSLSKLRDLKLWLNML------EGEIP-----QELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp G-GGCTTCCEEECCSSCC------CSCCC-----GGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCS
T ss_pred H-hcCCCCCEEECCCCcc------cCcCC-----HHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCccCC
Confidence 3 3789999999997653 31111 12346899999999883 4432 22223578999999999999864
Q ss_pred HHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 479 WGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 479 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.. ...+..+++|++|++++|.++.. ++..+.++++|+.|++++|+++
T Consensus 505 ~~-p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 505 EI-PKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CC-CGGGGGCTTCCEEECCSSCCEEE-CCGGGGGCTTCCEEECCSSEEE
T ss_pred cC-ChHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCCCEEECCCCccC
Confidence 22 23346789999999999988754 5577889999999999999865
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=2.4e-21 Score=200.98 Aligned_cols=196 Identities=11% Similarity=0.067 Sum_probs=93.4
Q ss_pred CCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHH--hccCCCCceEEEecCCCCcchhcccchhHH-H
Q 008051 297 ANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAV--GSSCPLLEELRVFPADPFDEEITYGVTEAG-F 372 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~ 372 (579)
++|+.|++++|.+..-. ..+...+++|+.|+++++ +.+...... ...+++|+.|+++++. ++... .
T Consensus 310 ~~L~~L~l~~n~l~~ip-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~ 379 (549)
T 2z81_A 310 EKVKRITVENSKVFLVP-CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH---------LRSMQKT 379 (549)
T ss_dssp TTCCEEEEESSCCCCCC-HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC---------CCCHHHH
T ss_pred ccceEEEeccCccccCC-HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc---------ccccccc
Confidence 44555555555432111 112234556666666543 222221111 1334556666665332 32221 1
Q ss_pred HHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-c
Q 008051 373 LAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-L 451 (579)
Q Consensus 373 ~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~ 451 (579)
......+++|++|++..+.++. +......+++|+.|+++++. ++.++.. ..++|+.|+++++ +
T Consensus 380 ~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~~~~L~~L~Ls~N~------l~~l~~~--------~~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 380 GEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTG------IRVVKTC--------IPQTLEVLDVSNNNL 443 (549)
T ss_dssp HHHGGGCTTCCEEECTTCCCCC--CCSCCCCCTTCCEEECTTSC------CSCCCTT--------SCTTCSEEECCSSCC
T ss_pred hhhhhcCCCCCEEECCCCCCcc--CChhhcccccccEEECCCCC------cccccch--------hcCCceEEECCCCCh
Confidence 1223345556655554444431 10011234556666665543 2211110 1246666666652 3
Q ss_pred ChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 452 TDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 452 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
+.. ...+++|+.|++++|.++. +.. ...+++|++|++++|.++.. .+..+.++++|+.|++++|+++
T Consensus 444 ~~~-----~~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 444 DSF-----SLFLPRLQELYISRNKLKT--LPD-ASLFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SCC-----CCCCTTCCEEECCSSCCSS--CCC-GGGCTTCCEEECCSSCCCCC-CTTGGGGCTTCCEEECCSSCBC
T ss_pred hhh-----cccCChhcEEECCCCccCc--CCC-cccCccCCEEecCCCccCCc-CHHHHhcCcccCEEEecCCCcc
Confidence 321 1356777777777776642 111 13467777777777766643 3345667777777777777753
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.7e-20 Score=180.98 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=71.0
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+ .+..+++|+.|+++++ +++. .....+++|+.|++++|.+++...
T Consensus 241 ~l~~L~~L~l~~n~------l~~~~-------~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQ------ISDIN-------AVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp TCTTCCEEECCSSC------CCCCG-------GGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred cCCCCCEEECCCCc------cCCCh-------hHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcCh
Confidence 56778888877654 33211 1345678888888773 4432 123567889999999998876554
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.. +..+++|++|++++|++++... +..+++|+.|++++|+++
T Consensus 305 ~~-l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EV-IGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HH-HHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred hH-hhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 43 3668899999999998876422 778889999999998865
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1e-20 Score=196.25 Aligned_cols=419 Identities=15% Similarity=0.078 Sum_probs=208.8
Q ss_pred CCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCCh
Q 008051 74 PNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFST 153 (579)
Q Consensus 74 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 153 (579)
+++++|+++++.. ... .+.. ...+++|++|+++++.++......+. .+++|++|+++++ .++.
T Consensus 26 ~~L~~L~Ls~n~l-~~~--~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~l~~ 88 (549)
T 2z81_A 26 AAMKSLDLSFNKI-TYI--GHGD------------LRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDN-HLSS 88 (549)
T ss_dssp TTCCEEECCSSCC-CEE--CSST------------TSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTS-CCCS
T ss_pred CCccEEECcCCcc-Ccc--Chhh------------hhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCC-ccCc
Confidence 5688888887642 111 1111 13567788888887776543323333 6677888888877 4443
Q ss_pred HHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChH
Q 008051 154 DGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLE 233 (579)
Q Consensus 154 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 233 (579)
. .+..+..+++|++|++++|.++..+. ......+++|++|+++++.. +.. .....+..+++|++|+++++.-..
T Consensus 89 ~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~n~~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 89 L-SSSWFGPLSSLKYLNLMGNPYQTLGV---TSLFPNLTNLQTLRIGNVET-FSE-IRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp C-CHHHHTTCTTCCEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSS-CCE-ECTTTTTTCCEEEEEEEEETTCCE
T ss_pred c-CHHHhccCCCCcEEECCCCcccccch---hhhhhccCCccEEECCCCcc-ccc-cCHhhhhcccccCeeeccCCcccc
Confidence 2 22334467888888888877654321 11223566777777776530 110 001123556677777776654222
Q ss_pred HHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCccccccc-CccccccchH--hhhhhcCCCCCeeeeccccCC
Q 008051 234 QLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLS-GLWQATALYF--PALSPVCANLTFLNLSYATLG 310 (579)
Q Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~-~~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~ 310 (579)
..+..+..+++|++|++........ . ...+..+++|+.|. ....+....+ ..+...+++|+.|+++++.+.
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~----~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFL----L--EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTH----H--HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred cChhhhhccccCceEecccCccccc----c--hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 2233344555666665543332110 0 01123355555554 1111111000 001123344445544444433
Q ss_pred cHHHHHHH---HcC-----------------------------------------------------------CcCcEEe
Q 008051 311 SSELVKLL---MHC-----------------------------------------------------------PLLKRLW 328 (579)
Q Consensus 311 ~~~l~~~~---~~~-----------------------------------------------------------~~L~~L~ 328 (579)
+.....+. ..+ ++|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 33322221 222 3333343
Q ss_pred ccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHH--HHcCCCcchhhhhcCcCCCHHHH-HHHHHhCC
Q 008051 329 VLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLA--VSHGCPRLQYVLYFCQAMTNAAV-ATIVRNCP 405 (579)
Q Consensus 329 l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--l~~~~~~L~~L~~~~~~~~~~~l-~~l~~~~~ 405 (579)
++++.-...-..+...+++|+.|+++++. +++..... ....+++|+.|.+..+.++.... ......++
T Consensus 317 l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 317 VENSKVFLVPCSFSQHLKSLEFLDLSENL---------MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp EESSCCCCCCHHHHHHCTTCCEEECCSSC---------CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred eccCccccCCHHHHhcCccccEEEccCCc---------cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 33321110111122345666666666432 33322211 12345666666665555554321 12234566
Q ss_pred CCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHH
Q 008051 406 NFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCV 484 (579)
Q Consensus 406 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 484 (579)
+|+.|+++++. ++.+|. .+..+++|+.|+++++ ++.-. ....++|+.|++++|.+++.
T Consensus 388 ~L~~L~Ls~N~------l~~lp~------~~~~~~~L~~L~Ls~N~l~~l~----~~~~~~L~~L~Ls~N~l~~~----- 446 (549)
T 2z81_A 388 NLTSLDISRNT------FHPMPD------SCQWPEKMRFLNLSSTGIRVVK----TCIPQTLEVLDVSNNNLDSF----- 446 (549)
T ss_dssp TCCEEECTTCC------CCCCCS------CCCCCTTCCEEECTTSCCSCCC----TTSCTTCSEEECCSSCCSCC-----
T ss_pred CCCEEECCCCC------CccCCh------hhcccccccEEECCCCCccccc----chhcCCceEEECCCCChhhh-----
Confidence 77777766543 222221 1123566777777652 22100 01125677778877776542
Q ss_pred HhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccccccc
Q 008051 485 LRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDNQ 555 (579)
Q Consensus 485 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~~~~~ 555 (579)
...+++|++|++++|.++. ++. ...+++|+.|++++|+++......+ ..+++++.-.+.+++..-+.
T Consensus 447 ~~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 447 SLFLPRLQELYISRNKLKT--LPD-ASLFPVLLVMKISRNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCTTCCEEECCSSCCSS--CCC-GGGCTTCCEEECCSSCCCCCCTTGG-GGCTTCCEEECCSSCBCCCH
T ss_pred cccCChhcEEECCCCccCc--CCC-cccCccCCEEecCCCccCCcCHHHH-hcCcccCEEEecCCCccCCC
Confidence 1467889999999998773 333 3568889999999998764322222 35778877777777654433
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=1.3e-20 Score=190.64 Aligned_cols=344 Identities=15% Similarity=0.139 Sum_probs=223.5
Q ss_pred hCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCC
Q 008051 72 RFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGF 151 (579)
Q Consensus 72 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 151 (579)
.+++++.|++.++. +... + . ...+++|++|+++++.+++... ...+++|++|+++++ .+
T Consensus 44 ~l~~l~~L~l~~~~-i~~l---~------------~-~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n-~l 102 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSI---D------------G-VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNN-QI 102 (466)
T ss_dssp HHHTCCEEECCSSC-CCCC---T------------T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CC
T ss_pred HhccccEEecCCCC-CccC---c------------c-hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCC-cc
Confidence 45788999887663 2111 1 0 2467899999999888665322 347889999999988 44
Q ss_pred ChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccC
Q 008051 152 STDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSIS 231 (579)
Q Consensus 152 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 231 (579)
+. +.. +..+++|++|++++|.+++... ...+++|++|+++++. +.. ++. +..+++|+.|.+.+...
T Consensus 103 ~~--~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~--l~~--~~~-~~~l~~L~~L~l~~~~~ 168 (466)
T 1o6v_A 103 AD--ITP-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNT--ISD--ISA-LSGLTSLQQLSFGNQVT 168 (466)
T ss_dssp CC--CGG-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEE--ECC--CGG-GTTCTTCSEEEEEESCC
T ss_pred cc--Chh-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCc--cCC--Chh-hccCCcccEeecCCccc
Confidence 43 222 5578999999999887766432 3367889999988764 222 112 46788888888864331
Q ss_pred hHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCc
Q 008051 232 LEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGS 311 (579)
Q Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 311 (579)
.+.. +..+++|+.|++....... +. ....+++|++|++++|.+..
T Consensus 169 --~~~~-~~~l~~L~~L~l~~n~l~~-------------------------------~~-~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 169 --DLKP-LANLTTLERLDISSNKVSD-------------------------------IS-VLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp --CCGG-GTTCTTCCEEECCSSCCCC-------------------------------CG-GGGGCTTCSEEECCSSCCCC
T ss_pred --Cchh-hccCCCCCEEECcCCcCCC-------------------------------Ch-hhccCCCCCEEEecCCcccc
Confidence 1111 4566677777664332211 11 12356777888887777443
Q ss_pred HHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCc
Q 008051 312 SELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQ 390 (579)
Q Consensus 312 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~ 390 (579)
... +..+++|+.|+++++ +.+. . ....+++|+.|+++++. ++.... ...+++|+.|.+..+
T Consensus 214 ~~~---~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~---------l~~~~~---~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 214 ITP---LGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQ---------ISNLAP---LSGLTKLTELKLGAN 275 (466)
T ss_dssp CGG---GGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSC---------CCCCGG---GTTCTTCSEEECCSS
T ss_pred ccc---ccccCCCCEEECCCCCcccc--h-hhhcCCCCCEEECCCCc---------cccchh---hhcCCCCCEEECCCC
Confidence 221 456777888887764 2221 1 12456778888887553 222111 345777888866666
Q ss_pred CCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCee
Q 008051 391 AMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELL 469 (579)
Q Consensus 391 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 469 (579)
.++.... ...+++|+.|+++++. +...+. +..+++|+.|+++++ +++... ...+++|+.|
T Consensus 276 ~l~~~~~---~~~l~~L~~L~L~~n~------l~~~~~-------~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L 336 (466)
T 1o6v_A 276 QISNISP---LAGLTALTNLELNENQ------LEDISP-------ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL 336 (466)
T ss_dssp CCCCCGG---GTTCTTCSEEECCSSC------CSCCGG-------GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEE
T ss_pred ccCcccc---ccCCCccCeEEcCCCc------ccCchh-------hcCCCCCCEEECcCCcCCCchh---hccCccCCEe
Confidence 6554222 3468899999998765 332221 356899999999883 444322 3578999999
Q ss_pred eccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 470 SVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 470 ~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
++++|.+++. ..+..+++|+.|++++|.+++... +..+++|+.|++++|+++.
T Consensus 337 ~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc---hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence 9999988653 234678999999999998877522 7889999999999998654
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.6e-21 Score=200.81 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=50.6
Q ss_pred hcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccc
Q 008051 110 DRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPE 189 (579)
Q Consensus 110 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 189 (579)
..+++|++|+++++.++......+. .+++|++|+++++ .++. ++.. .+++|++|++++|.++.... .....
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~---p~~~~ 112 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHN-KLVK--ISCH--PTVNLKHLDLSFNAFDALPI---CKEFG 112 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSS-CCCE--EECC--CCCCCSEEECCSSCCSSCCC---CGGGG
T ss_pred cccccccEEecCCCccCCcChHHhh-cccCCCEEecCCC-ceee--cCcc--ccCCccEEeccCCccccccc---hhhhc
Confidence 3456666666666655432222222 4556666666655 3432 2221 45666666666665543221 11122
Q ss_pred cCCccceeecccccCCCCHHHHHHHHHhCCCC--CeeEecCc
Q 008051 190 SFTSLEVLNFANVNSEVDFDALEKLVSRCKSL--KDLKVNKS 229 (579)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L--~~L~l~~~ 229 (579)
.+++|++|+++++. +.... +..+++| +.|++.++
T Consensus 113 ~l~~L~~L~L~~n~--l~~~~----~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 113 NMSQLKFLGLSTTH--LEKSS----VLPIAHLNISKVLLVLG 148 (520)
T ss_dssp GCTTCCEEEEEESS--CCGGG----GGGGTTSCEEEEEEEEC
T ss_pred cCCcceEEEecCcc--cchhh----ccccccceeeEEEeecc
Confidence 44566666666553 33311 2344555 66666554
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=7.2e-24 Score=221.18 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=53.3
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+++|++|+++++.++......+. .+++|++|+++++ .++... +..+..+++|++|++++|.++...... ...
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~ 122 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVETNLASLENFP----IGH 122 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCS----CTT
T ss_pred CCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCC-cCCccC-HhhhcCccccccccccccccccCCCcc----ccc
Confidence 456666666666654432222222 4566666666665 333211 122335666666666666544433211 124
Q ss_pred CCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 191 FTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+++|++|+++++. +....++..+.++++|++|+++++.
T Consensus 123 l~~L~~L~L~~n~--l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 123 LKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccEEecCCCc--cceecChhhhcccCCCCEEeCcCCc
Confidence 5566666666542 2211112223555666666665553
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=2.6e-22 Score=210.81 Aligned_cols=112 Identities=16% Similarity=0.064 Sum_probs=72.9
Q ss_pred hcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCC
Q 008051 437 RTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCES 515 (579)
Q Consensus 437 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 515 (579)
..+++|+.|+++++ +... .......+++|+.|++++|.+++..+...+..+++|++|++++|.++.. .+..+.++++
T Consensus 421 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~ 498 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHR 498 (606)
T ss_dssp TTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred hccccCCEEECcCCCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-Chhhhccccc
Confidence 35677888888763 2221 1112345678888888888776532333445678888888888887754 3456678888
Q ss_pred CcEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 516 MRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 516 L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
|+.|++++|+++......+ ..+++++.-.+..+..
T Consensus 499 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CCEEECCSSCCSCEEGGGT-TTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCCcCHHHc-cCCCcCCEEECCCCcC
Confidence 9999999888765433333 3467777766666643
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.1e-21 Score=197.71 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=89.6
Q ss_pred ccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHH-HHHHHHHhCCCCceEEeeccCCCCCC
Q 008051 343 SSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNA-AVATIVRNCPNFTCFRLCIMNPGQPD 421 (579)
Q Consensus 343 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~ 421 (579)
..+++|+.|+++++. +++.... ....+++|+.|.+..+.++.. .+......+++|+.|+++++.
T Consensus 321 ~~l~~L~~L~Ls~n~---------l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~----- 385 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL---------LTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS----- 385 (520)
T ss_dssp SSCCCCCEEECCSSC---------CCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-----
T ss_pred hhCCcccEEEeECCc---------cChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-----
Confidence 345677777777543 3321111 123467777777766666642 222223367778888777654
Q ss_pred ccCC-CccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcc-cCcCeeeccccCCChHHHHHHHhCCCcCcEEEecC
Q 008051 422 YVTN-EPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYA-KNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRD 498 (579)
Q Consensus 422 ~i~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 498 (579)
+.. .+.. ....+++|+.|+++++ ++.... ..+ ++|+.|++++|.++. +...+..+++|++|++++
T Consensus 386 -l~~~l~~~-----~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 386 -VSYDEKKG-----DCSWTKSLLSLNMSSNILTDTIF----RCLPPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVAS 453 (520)
T ss_dssp -CBCCGGGC-----SCCCCTTCCEEECCSSCCCGGGG----GSCCTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCS
T ss_pred -CCcccccc-----hhccCccCCEEECcCCCCCcchh----hhhcccCCEEECCCCcccc--cchhhhcCCCCCEEECCC
Confidence 332 1110 1234577778887763 443221 122 578888888887652 222223677888888888
Q ss_pred CCCCHHHHHH-HHhcCCCCcEEEecccccC
Q 008051 499 CPFGDAALLS-GLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 499 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~ 527 (579)
|.++. ++. .+.++++|+.|++++|+++
T Consensus 454 N~l~~--l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 454 NQLKS--VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp SCCCC--CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCc--cCHHHhccCCcccEEECcCCCCc
Confidence 87764 222 3667778888888888764
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=6.6e-19 Score=171.18 Aligned_cols=304 Identities=18% Similarity=0.212 Sum_probs=171.7
Q ss_pred hhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCC
Q 008051 71 RRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDG 150 (579)
Q Consensus 71 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 150 (579)
..++++++|++.++... ... . ...+++|++|+++++.+++... ...+++|++|+++++ .
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~---------------~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n-~ 99 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQ---------------G-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTN-K 99 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCT---------------T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-C
T ss_pred hhcccccEEEEeCCccc-cch---------------h-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCC-c
Confidence 45678888888876322 110 0 2457888888888887665322 347788888888887 5
Q ss_pred CChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 151 FSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 151 ~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
++. ++. +..+++|++|++++|.+.+... ...+++|++|+++++..... +.. +..+++|++|++.++.
T Consensus 100 i~~--~~~-~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~---~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 100 ITD--ISA-LQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD---LSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp CCC--CGG-GTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC---CGG-GTTCTTCCEEECCSSC
T ss_pred ccC--chH-HcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc---ccc-hhhCCCCcEEEecCCC
Confidence 544 222 4578888888888887665432 23567788888876631111 111 4567777777777665
Q ss_pred ChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCC
Q 008051 231 SLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLG 310 (579)
Q Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 310 (579)
+..+.. +.. +++|++|++++|.+.
T Consensus 167 -~~~~~~-~~~------------------------------------------------------l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 167 -VKDVTP-IAN------------------------------------------------------LTDLYSLSLNYNQIE 190 (347)
T ss_dssp -CCCCGG-GGG------------------------------------------------------CTTCSEEECTTSCCC
T ss_pred -cCCchh-hcc------------------------------------------------------CCCCCEEEccCCccc
Confidence 111000 223 344444444444422
Q ss_pred cHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcC
Q 008051 311 SSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFC 389 (579)
Q Consensus 311 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~ 389 (579)
.... +..+++|+.|+++++ +.+... ...+++|+.|+++++. +++... ...+++|++|.+..
T Consensus 191 ~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~---------l~~~~~---~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 191 DISP---LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK---------ITDLSP---LANLSQLTWLEIGT 252 (347)
T ss_dssp CCGG---GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC---------CCCCGG---GTTCTTCCEEECCS
T ss_pred cccc---ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc---------cCCCcc---hhcCCCCCEEECCC
Confidence 2111 233444444444432 111000 2234445555554332 211111 22345555554443
Q ss_pred cCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCe
Q 008051 390 QAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLEL 468 (579)
Q Consensus 390 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 468 (579)
+.+++. . ....+++|+.|+++++. ++..+ .+..+++|+.|+++++ +++.....+ ..+++|+.
T Consensus 253 n~l~~~--~-~~~~l~~L~~L~l~~n~------l~~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~ 315 (347)
T 4fmz_A 253 NQISDI--N-AVKDLTKLKMLNVGSNQ------ISDIS-------VLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTT 315 (347)
T ss_dssp SCCCCC--G-GGTTCTTCCEEECCSSC------CCCCG-------GGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSE
T ss_pred CccCCC--h-hHhcCCCcCEEEccCCc------cCCCh-------hhcCCCCCCEEECcCCcCCCcChhHh-hccccCCE
Confidence 333331 1 12367899999998764 44221 2356899999999884 555544444 56899999
Q ss_pred eeccccCCChHHHHHHHhCCCcCcEEEecCCCCC
Q 008051 469 LSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFG 502 (579)
Q Consensus 469 L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 502 (579)
|++++|++++... +..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC---hhhhhccceeehhhhccc
Confidence 9999999875332 567899999999999875
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.3e-19 Score=183.27 Aligned_cols=340 Identities=17% Similarity=0.188 Sum_probs=232.0
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
++++++|++.++.+.. +..+ ..+++|++|+++++ .++. +.. +..+++|++|++++|.+..... ...+
T Consensus 45 l~~l~~L~l~~~~i~~--l~~~-~~l~~L~~L~Ls~n-~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS--IDGV-EYLNNLTQINFSNN-QLTD--ITP-LKNLTKLVDILMNNNQIADITP------LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCC--CTTG-GGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred hccccEEecCCCCCcc--Ccch-hhhcCCCEEECCCC-ccCC--chh-hhccccCCEEECCCCccccChh------hcCC
Confidence 4678899998887654 2223 36789999999988 4544 222 5578999999999887665432 3367
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNK 271 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 271 (579)
++|++|+++++. +... +. +..+++|++|+++++. +.++. .+..+++|+.|.++.
T Consensus 112 ~~L~~L~L~~n~--l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~------------------- 165 (466)
T 1o6v_A 112 TNLTGLTLFNNQ--ITDI--DP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN------------------- 165 (466)
T ss_dssp TTCCEEECCSSC--CCCC--GG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-------------------
T ss_pred CCCCEEECCCCC--CCCC--hH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-------------------
Confidence 889999988764 2221 12 5778888888888775 22211 144555555554421
Q ss_pred CcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceE
Q 008051 272 CKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEEL 351 (579)
Q Consensus 272 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 351 (579)
.... +.. ...+++|+.|++++|.+.... .+..+++|+.|+++++.-..... ...+++|+.|
T Consensus 166 -----------~~~~--~~~-~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 226 (466)
T 1o6v_A 166 -----------QVTD--LKP-LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226 (466)
T ss_dssp -----------SCCC--CGG-GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred -----------cccC--chh-hccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence 0100 111 346889999999999855432 35689999999998752211111 3558999999
Q ss_pred EEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchH
Q 008051 352 RVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEA 431 (579)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~ 431 (579)
+++++. +++.+ ....+++|+.|.+..+.++.... ...+++|+.|+++++. ++..+.
T Consensus 227 ~l~~n~---------l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~------l~~~~~--- 282 (466)
T 1o6v_A 227 SLNGNQ---------LKDIG---TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQ------ISNISP--- 282 (466)
T ss_dssp ECCSSC---------CCCCG---GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC------CCCCGG---
T ss_pred ECCCCC---------cccch---hhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCc------cCcccc---
Confidence 999664 33321 23458999999877766654322 4578999999998765 342221
Q ss_pred HHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHH
Q 008051 432 FGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGL 510 (579)
Q Consensus 432 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 510 (579)
+..+++|+.|+++++ +.+... ...+++|+.|++++|.+++... +..+++|++|++++|.+++. ..+
T Consensus 283 ----~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l 349 (466)
T 1o6v_A 283 ----LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSL 349 (466)
T ss_dssp ----GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGG
T ss_pred ----ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhh
Confidence 346899999999883 443221 4678999999999999865332 46799999999999988774 467
Q ss_pred hcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccc
Q 008051 511 DKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEA 549 (579)
Q Consensus 511 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~ 549 (579)
.++++|+.|++++|+++.... ...+|+++.-.+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCE
T ss_pred ccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCC
Confidence 889999999999999876543 356777776555554
No 23
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=5e-18 Score=167.34 Aligned_cols=212 Identities=14% Similarity=0.154 Sum_probs=129.2
Q ss_pred cCCCCCeeeeccccCCcHH---HHHHHHcCCcCcEEeccCc-cChHHHHHHh---ccC---------CCCceEEEecCCC
Q 008051 295 VCANLTFLNLSYATLGSSE---LVKLLMHCPLLKRLWVLDT-VEDRGLEAVG---SSC---------PLLEELRVFPADP 358 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~---~~~---------~~L~~L~l~~~~~ 358 (579)
.+++|++|++++|.++..+ +...+..+++|+.|+++++ +.+.+...+. ..+ ++|+.|+++++.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~- 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR- 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-
Confidence 4566667777666655432 3334455666666666654 3322222222 112 667777776432
Q ss_pred CcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHH---
Q 008051 359 FDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAV--- 435 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~--- 435 (579)
+++.++..++ .....+++|+.|.++++. ++ +.++..+
T Consensus 171 --------l~~~~~~~l~----------------------~~l~~~~~L~~L~L~~n~------l~----~~g~~~l~~~ 210 (386)
T 2ca6_A 171 --------LENGSMKEWA----------------------KTFQSHRLLHTVKMVQNG------IR----PEGIEHLLLE 210 (386)
T ss_dssp --------CTGGGHHHHH----------------------HHHHHCTTCCEEECCSSC------CC----HHHHHHHHHT
T ss_pred --------CCcHHHHHHH----------------------HHHHhCCCcCEEECcCCC------CC----HhHHHHHHHH
Confidence 4433332211 112245666666666543 33 3343332
Q ss_pred -HhcCcccceeeccc-ccChHHHHH---HHhcccCcCeeeccccCCChHHHHHHHh---C--CCcCcEEEecCCCCCHHH
Q 008051 436 -VRTCTNLQRLSLSG-LLTDLTFEY---IGQYAKNLELLSVAFAGSSDWGMQCVLR---G--CPKLRKFEIRDCPFGDAA 505 (579)
Q Consensus 436 -~~~~~~L~~L~l~~-~~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~---~--~~~L~~L~l~~~~~~~~~ 505 (579)
+..+++|+.|++++ .+++.+... ....+++|+.|++++|.+++.+...+.. . +++|++|++++|.+++.+
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 23567777777776 355544333 3456789999999999998876654433 2 799999999999999853
Q ss_pred ---HHHHH-hcCCCCcEEEecccccChhH--HHHHhhcCCCceEEEec
Q 008051 506 ---LLSGL-DKCESMRSLWMSACNVTMDG--CKLLASKKPRLNVEVIK 547 (579)
Q Consensus 506 ---~~~~l-~~~~~L~~L~l~~~~i~~~~--~~~l~~~~p~l~~~~~~ 547 (579)
++..+ .++++|+.|++++|+++..+ +..+...+|.++..-+.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 34444 66899999999999998877 57777777776544333
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.9e-22 Score=210.37 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=62.4
Q ss_pred HHhhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCC
Q 008051 69 LTRRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSC 148 (579)
Q Consensus 69 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 148 (579)
.+..+++|++|+++++. +... .+. ....+++|++|+++++.++......+. .+++|++|+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~-i~~i--~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n 110 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCE-IQTI--EDG------------AYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVET 110 (570)
T ss_dssp TTTTCSSCCEEECTTCC-CCEE--CTT------------TTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTS
T ss_pred HhhCCCCceEEECCCCc-CCcc--Ccc------------cccCchhCCEEeCcCCcCCccCHhhhc-Ccccccccccccc
Confidence 34567778888887763 2111 010 113567777777777765543222333 5677777777766
Q ss_pred CCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccc
Q 008051 149 DGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANV 202 (579)
Q Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~ 202 (579)
.++..... .+..+++|++|++++|.+.... +......+++|++|+++++
T Consensus 111 -~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 111 -NLASLENF-PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp -CCCCSTTC-SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTS
T ss_pred -ccccCCCc-cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCC
Confidence 34331100 1346777777777777655422 1111224567777777655
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=3.4e-21 Score=205.07 Aligned_cols=141 Identities=17% Similarity=0.099 Sum_probs=89.8
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHH-------HHHhcccCcCeeecccc
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFE-------YIGQYAKNLELLSVAFA 474 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-------~~~~~~~~L~~L~l~~~ 474 (579)
.+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++..... .....+++|+.|++++|
T Consensus 478 ~l~~L~~L~Ls~N~------l~~i~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 478 PLRNLTILDLSNNN------IANIND-----DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TCTTCCEEECCSSC------CCCCCT-----TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCC------CCcCCh-----hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 56677777776543 332221 12345788888888773 3321100 01345788899999988
Q ss_pred CCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEecccccccc
Q 008051 475 GSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDN 554 (579)
Q Consensus 475 ~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~~~~ 554 (579)
.++... ...+.++++|++|++++|.++.. ....+.++++|+.|++++|.++......+...+++++.-.+.+++..-+
T Consensus 547 ~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 547 GFDEIP-VEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCC-HHHcccccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 876311 12346688999999999988753 2345678899999999999977655444444567777777777766554
Q ss_pred cc
Q 008051 555 QA 556 (579)
Q Consensus 555 ~~ 556 (579)
..
T Consensus 625 c~ 626 (680)
T 1ziw_A 625 CE 626 (680)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.77 E-value=6.5e-21 Score=202.93 Aligned_cols=85 Identities=25% Similarity=0.228 Sum_probs=38.7
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+++|++|+++++.++......+. .+++|++|+++++ .++.. .+..+..+++|++|++++|.++......+ ..
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~ 143 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSN-SIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQ----VQ 143 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCCC-CSCTTTTCTTCCEEECCSSCCSCCCCCSS----SC
T ss_pred cccCcCEEECCCCccCccChhhhc-cCCCCCEEECCCC-ccCcc-ChhHccccCCCCEEECCCCcccccCchhh----cc
Confidence 455566666655544432111122 4455666666555 23221 01122345566666666655443322211 24
Q ss_pred CCccceeecccc
Q 008051 191 FTSLEVLNFANV 202 (579)
Q Consensus 191 ~~~L~~L~l~~~ 202 (579)
+++|++|+++++
T Consensus 144 l~~L~~L~L~~n 155 (680)
T 1ziw_A 144 LENLQELLLSNN 155 (680)
T ss_dssp CTTCCEEECCSS
T ss_pred cccCCEEEccCC
Confidence 455666666554
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.1e-20 Score=191.08 Aligned_cols=363 Identities=12% Similarity=0.107 Sum_probs=208.2
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++|++|+++++.++......+. .+++|++|+++++. +........+..+++|++|++++|.++......+ ..++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF----NGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT----TTCT
T ss_pred CccCEEEecCCccCcCChhHhc-cCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhc----cCcc
Confidence 6788888888876654333333 67788888888773 3211112234568888888888887665543333 2567
Q ss_pred ccceeecccccCCCCHHHHH-HHHHhCCCCCeeEecCccChHHH-H-HHHhhCCCCeeecccccccccChhhHHHHHHHH
Q 008051 193 SLEVLNFANVNSEVDFDALE-KLVSRCKSLKDLKVNKSISLEQL-Q-KLLVLAPQLVDLGTGSFSQELTDDQRAELESAF 269 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 269 (579)
+|++|+++++. ++..... ..+..+++|++|+++++. +..+ + .++..+++|+.|++.......
T Consensus 104 ~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------ 168 (455)
T 3v47_A 104 NLEVLTLTQCN--LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS------------ 168 (455)
T ss_dssp TCCEEECTTSC--CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC------------
T ss_pred cCCEEeCCCCC--CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc------------
Confidence 88888888774 4432222 224677888888888775 2211 1 124566666666654322111
Q ss_pred hcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHH-------HHHHHcCCcCcEEeccCc-cChHHHHHH
Q 008051 270 NKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSEL-------VKLLMHCPLLKRLWVLDT-VEDRGLEAV 341 (579)
Q Consensus 270 ~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l-------~~~~~~~~~L~~L~l~~~-~~~~~l~~~ 341 (579)
.....+..+ ...+|+.|+++++.+..... ......+++|+.|+++++ +.......+
T Consensus 169 --------------~~~~~l~~l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 169 --------------ICEEDLLNF--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp --------------CCTTTSGGG--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred --------------cChhhhhcc--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 111111111 12567778887776432110 001124567888888865 444333333
Q ss_pred hc--cCCCCceEEEecCCCCcc--hhcccchhHHHHHHH-cCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccC
Q 008051 342 GS--SCPLLEELRVFPADPFDE--EITYGVTEAGFLAVS-HGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMN 416 (579)
Q Consensus 342 ~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~l~-~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 416 (579)
.. ..++|+.|+++++..... +... +.+.....+. -.+++|+.|.+..+.++......+ ..+++|+.|+++++.
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTN-FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCS-SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSC
T ss_pred hccccccceeeEeeccccccccccchhh-hccCcccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCc
Confidence 32 236788888875532111 0000 0000000000 013677777766666554322222 367899999998765
Q ss_pred CCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEE
Q 008051 417 PGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFE 495 (579)
Q Consensus 417 ~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~ 495 (579)
++..+. ..+..+++|+.|+++++ ++... ......+++|+.|++++|.++.... ..+.++++|++|+
T Consensus 311 ------l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ 377 (455)
T 3v47_A 311 ------INKIDD-----NAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELA 377 (455)
T ss_dssp ------CCEECT-----TTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEE
T ss_pred ------ccccCh-----hHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCcccccCh-hhccccccccEEE
Confidence 332211 12345789999999873 43321 2223567899999999998865322 2335689999999
Q ss_pred ecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 496 IRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 496 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
+++|.++.. ....+..+++|+.|++++|+++.
T Consensus 378 L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 378 LDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccC-CHhHhccCCcccEEEccCCCccc
Confidence 999988763 23456888999999999999643
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=2.6e-20 Score=198.50 Aligned_cols=85 Identities=18% Similarity=0.115 Sum_probs=40.8
Q ss_pred hCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHh-------CCCCCeeEecCccChHH
Q 008051 162 NCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSR-------CKSLKDLKVNKSISLEQ 234 (579)
Q Consensus 162 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~-------~~~L~~L~l~~~~~~~~ 234 (579)
.+++|++|++++|.+....... ...+++|++|+++++. .++...++..+.. +++|+.|+++++. +..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~Ls~N~-~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNIACNR-GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEE 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEECTTCT-TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCB
T ss_pred cCCCCCEEECcCCCCCccChHH----HhCCCCCCEEECcCCC-CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCc
Confidence 5666666666666543322211 2245566666666552 1333223322222 2366666666654 224
Q ss_pred HHH--HHhhCCCCeeecccc
Q 008051 235 LQK--LLVLAPQLVDLGTGS 252 (579)
Q Consensus 235 l~~--~~~~~~~L~~L~l~~ 252 (579)
++. .+..+++|+.|++..
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVH 582 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTT
T ss_pred cCChhhhhcCCCCCEEECCC
Confidence 443 455556666665543
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=2.9e-20 Score=194.95 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=61.8
Q ss_pred hCCCCcEEeecCCCCCChH----------------HHHHHHh--hCCCCCeEeccCCCcccccccccccccccCCcccee
Q 008051 136 SFPNFKVLSLSSCDGFSTD----------------GLAAIAT--NCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVL 197 (579)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~----------------~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L 197 (579)
.+++|++|+++++ .++.. .++..+. ++++|++|++++|.+...-... ...+++|++|
T Consensus 204 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L 278 (636)
T 4eco_A 204 RLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLI 278 (636)
T ss_dssp GCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEE
T ss_pred cccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEE
Confidence 5667777777766 34431 1333333 5677777777777644432221 2245677777
Q ss_pred ecccccCCCCHHHHHHHHHhC------CCCCeeEecCccChHHHHH--HHhhCCCCeeeccccc
Q 008051 198 NFANVNSEVDFDALEKLVSRC------KSLKDLKVNKSISLEQLQK--LLVLAPQLVDLGTGSF 253 (579)
Q Consensus 198 ~l~~~~~~~~~~~l~~~~~~~------~~L~~L~l~~~~~~~~l~~--~~~~~~~L~~L~l~~~ 253 (579)
+++++. .++...++..+..+ ++|++|+++++. +..++. .+..+++|+.|++...
T Consensus 279 ~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 279 NVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp ECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSC
T ss_pred ECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCC
Confidence 777662 14442344434443 677777777665 224444 5666667777766543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=2e-19 Score=177.63 Aligned_cols=325 Identities=15% Similarity=0.126 Sum_probs=188.8
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
..++++.|+++++.++......+ ..+++|++|+++++ .++... ...+..+++|++|++++|.++......+ ..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~-~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVF----QN 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHH-HHCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TT
T ss_pred ccCCceEEEecCCchhhCChhHh-cccccCcEEECCCC-cccccC-hhhccCCCCcCEEECCCCCCCcCCHHHh----cC
Confidence 35788888888876554332323 36788888888877 454421 1233468888888888887665543322 35
Q ss_pred CCccceeecccccCCCCHHHHH-HHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHH
Q 008051 191 FTSLEVLNFANVNSEVDFDALE-KLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAF 269 (579)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 269 (579)
+++|++|+++++. ++ .++ .++..+++|++|+++++.-....+..+.
T Consensus 116 l~~L~~L~L~~n~--l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------------------------- 162 (390)
T 3o6n_A 116 VPLLTVLVLERND--LS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ----------------------------- 162 (390)
T ss_dssp CTTCCEEECCSSC--CC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-----------------------------
T ss_pred CCCCCEEECCCCc--cC--cCCHHHhcCCCCCcEEECCCCccCccChhhcc-----------------------------
Confidence 6778888887663 22 111 1235677788888777651000001112
Q ss_pred hcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCc
Q 008051 270 NKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLE 349 (579)
Q Consensus 270 ~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 349 (579)
.+++|++|++++|.++... ...+++|+.|+++++.-.. ....++|+
T Consensus 163 -------------------------~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~-----~~~~~~L~ 208 (390)
T 3o6n_A 163 -------------------------ATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-----LAIPIAVE 208 (390)
T ss_dssp -------------------------SCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSE-----EECCSSCS
T ss_pred -------------------------CCCCCCEEECCCCcCCccc----cccccccceeecccccccc-----cCCCCcce
Confidence 3344555555554433221 2234555555554321110 01223455
Q ss_pred eEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccc
Q 008051 350 ELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMD 429 (579)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~ 429 (579)
.|+++++. ++... ....++|+.|.+..+.+++. .....+++|+.|+++++. ++..+.
T Consensus 209 ~L~l~~n~---------l~~~~----~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~------l~~~~~- 265 (390)
T 3o6n_A 209 ELDASHNS---------INVVR----GPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE------LEKIMY- 265 (390)
T ss_dssp EEECCSSC---------CCEEE----CCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC------CCEEES-
T ss_pred EEECCCCe---------eeecc----ccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc------CCCcCh-
Confidence 55555332 11110 01134555555544444432 123468889999988764 332111
Q ss_pred hHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHH
Q 008051 430 EAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLS 508 (579)
Q Consensus 430 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 508 (579)
..+..+++|+.|+++++ ++.. ......+++|+.|++++|.++.. ...+..+++|++|++++|.++..
T Consensus 266 ----~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~N~i~~~---- 333 (390)
T 3o6n_A 266 ----HPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTL---- 333 (390)
T ss_dssp ----GGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCC----
T ss_pred ----hHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceec--CccccccCcCCEEECCCCcccee----
Confidence 12345789999999873 3331 11224578999999999987532 11224469999999999988764
Q ss_pred HHhcCCCCcEEEecccccChhHHHHHhhcCCCceEE
Q 008051 509 GLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVE 544 (579)
Q Consensus 509 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~ 544 (579)
.+..+++|+.|++++|+++..+...+...++...+.
T Consensus 334 ~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~ 369 (390)
T 3o6n_A 334 KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369 (390)
T ss_dssp CCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBC
T ss_pred CchhhccCCEEEcCCCCccchhHHHHHHHHHhhccc
Confidence 267889999999999999988888887777665443
No 31
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.7e-17 Score=160.55 Aligned_cols=202 Identities=16% Similarity=0.183 Sum_probs=138.5
Q ss_pred cCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCc-CCCHHHH
Q 008051 320 HCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQ-AMTNAAV 397 (579)
Q Consensus 320 ~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~-~~~~~~l 397 (579)
.+++|+.|+++++ +.+.++......+++|++|+++++ . +++.....+.. +++|++|.+..+ .+++..+
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~--------~-l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL--------R-LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC--------B-CCHHHHHHHTT-CTTCSEEECTTCBSCCHHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc--------c-cCHHHHHHHhc-CCCCCEEECCCCCCCCHHHH
Confidence 3455555555543 333334444455556666666533 1 44444333333 566666644433 5666666
Q ss_pred HHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCc-ccceeecccc---cChHHHHHHHhcccCcCeeeccc
Q 008051 398 ATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCT-NLQRLSLSGL---LTDLTFEYIGQYAKNLELLSVAF 473 (579)
Q Consensus 398 ~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~ 473 (579)
..+...+++|+.|+++++. .++ +.++...+..++ +|+.|+++++ +++..+......+++|+.|++++
T Consensus 161 ~~~~~~~~~L~~L~l~~~~-----~l~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCF-----DFT----EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp HHHHHHCTTCCEEECCCCT-----TCC----HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred HHHHhcCCCCCEEcCCCCC-----CcC----hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 6666678888888887641 255 555666777788 8888888773 66677777777889999999999
Q ss_pred cC-CChHHHHHHHhCCCcCcEEEecCC-CCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceE
Q 008051 474 AG-SSDWGMQCVLRGCPKLRKFEIRDC-PFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNV 543 (579)
Q Consensus 474 ~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~ 543 (579)
|. +++.++..+ ..+++|++|++++| .+.+..+ ..+.++++|+.|++++| ++++++..+...+|.+++
T Consensus 232 ~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 232 SVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp CTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE
T ss_pred CCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEE
Confidence 98 777666544 66799999999999 5666543 45678999999999999 999999998888999874
No 32
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.3e-16 Score=155.37 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=51.4
Q ss_pred HhcCCCCCeeeecCcccChHHHHHHHh---hCCCCcEEeecCCC--CCC---hHHH---HHHHhhCCCCCeEeccCCCcc
Q 008051 109 ADRYPSLEELRLKRMSVSDESLEFLAV---SFPNFKVLSLSSCD--GFS---TDGL---AAIATNCKNLTELDIQENGIE 177 (579)
Q Consensus 109 ~~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~--~~~---~~~l---~~~~~~~~~L~~L~l~~~~i~ 177 (579)
...+++|++|+++++.+++.....++. .+++|++|+++++. .++ ..++ ...+..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 345677888888877777766555443 46677777777652 121 1122 223346677777777777655
Q ss_pred cccccccccccccCCccceeecccc
Q 008051 178 DISGSWLSCFPESFTSLEVLNFANV 202 (579)
Q Consensus 178 ~~~~~~l~~l~~~~~~L~~L~l~~~ 202 (579)
+.+...+......+++|++|+++++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC
Confidence 5433322222223344444444443
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=5.6e-20 Score=199.53 Aligned_cols=393 Identities=15% Similarity=0.076 Sum_probs=214.2
Q ss_pred hCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccC-hHHHHHHHhhCCCCcEEeecCCCC
Q 008051 72 RFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVS-DESLEFLAVSFPNFKVLSLSSCDG 150 (579)
Q Consensus 72 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~-~~~l~~l~~~~~~L~~L~l~~~~~ 150 (579)
-.+++++|+|+++.. .. ..+..+ ..+++|++|+++++... ......+ ..+++|++|+++++ .
T Consensus 22 lp~~l~~LdLs~N~i-~~--i~~~~~------------~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI-RT--VTASSF------------PFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSS-K 84 (844)
T ss_dssp SCTTCCEEEEESCCC-CE--ECSSSC------------SSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTC-C
T ss_pred CCCCcCEEECCCCcC-Cc--cChhHC------------cccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCC-c
Confidence 457789999987642 21 112222 46789999999988422 1111222 37789999999988 4
Q ss_pred CChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 151 FSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 151 ~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+... .+..+..+++|++|++++|.+++..... .....+++|++|+++++. +........+.++++|++|+++++.
T Consensus 85 l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 85 IYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQ--IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCC--CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred Cccc-CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCc--ccccccchhHhhCCCCCEEECCCCc
Confidence 5432 1334457899999999999876532211 113367899999998774 3322222345788999999998875
Q ss_pred C----hHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCc------ccccccCc-cccccchHhhhh------
Q 008051 231 S----LEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCK------NIHKLSGL-WQATALYFPALS------ 293 (579)
Q Consensus 231 ~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~------~L~~L~~~-~~~~~~~l~~~~------ 293 (579)
- ...+..+.. ++|+.|++.......... ..+..|. .|+.|... ..+.......+.
T Consensus 160 i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~~------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 160 IFLVCEHELEPLQG--KTLSFFSLAANSLYSRVS------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCCCCSGGGHHHHH--CSSCCCEECCSBSCCCCC------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred CCeeCHHHcccccC--CccceEECCCCccccccc------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 1 122222211 778888776543322100 0012222 26655411 111100000000
Q ss_pred -----------------------------h--cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHh
Q 008051 294 -----------------------------P--VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVG 342 (579)
Q Consensus 294 -----------------------------~--~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~ 342 (579)
. ..++|+.|++++|.+.... ...+..+++|+.|+++++.-........
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 0 1256777777766643211 1123456677777776532111111112
Q ss_pred ccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCc
Q 008051 343 SSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDY 422 (579)
Q Consensus 343 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 422 (579)
..+++|+.|+++++. ++.... ....++++|+.|.+..+.++......+ ..+++|+.|+++++.
T Consensus 311 ~~l~~L~~L~Ls~N~---------l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~------ 373 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNL---------LGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNA------ 373 (844)
T ss_dssp TTCSSCCEEEEESCC---------CSCCCS-CSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCC------
T ss_pred cCCCCCCEEECCCCC---------CCccCH-HHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCC------
Confidence 446677777777543 211100 011235666766555544432211111 246677777777644
Q ss_pred cCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCC
Q 008051 423 VTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPF 501 (579)
Q Consensus 423 i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 501 (579)
++..+ .+++|+.|+++++ ++. +.....+++.|++++|.+++......+.++++|+.|++++|.+
T Consensus 374 l~~i~----------~~~~L~~L~l~~N~l~~-----l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 374 LTTIH----------FIPSIPDIFLSGNKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp SCCCS----------SCCSCSEEEEESCCCCC-----CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred CCccc----------CCCCcchhccCCCCccc-----ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 22111 1567777777652 221 1123456788888888775544445556788888888888877
Q ss_pred CHHHHHHHHhcCCCCcEEEecccccC
Q 008051 502 GDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 502 ~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
+.......+..+++|+.|++++|.++
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred cccccccccccCCccccccCCCCccc
Confidence 64322223455788888888888865
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.8e-20 Score=203.46 Aligned_cols=429 Identities=14% Similarity=0.058 Sum_probs=261.9
Q ss_pred HHHhhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecC
Q 008051 68 ILTRRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSS 147 (579)
Q Consensus 68 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~ 147 (579)
..+..+++|+.|+++++....... +.. ...+++|++|+|+++.+.......+. .+++|++|++++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~--~~~------------f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTID--KEA------------FRNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYF 106 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEEC--TTT------------TSSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTT
T ss_pred hHCcccccCeEEeCCCCCCccccC--HHH------------hcCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcC
Confidence 346788999999999874332110 111 24689999999999987754333343 788999999999
Q ss_pred CCCCChHHHH-HHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccC-CCCHHHHHHHHHhCCCCCeeE
Q 008051 148 CDGFSTDGLA-AIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNS-EVDFDALEKLVSRCKSLKDLK 225 (579)
Q Consensus 148 ~~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~~~~~L~~L~ 225 (579)
+ .++..... ..+..+++|++|++++|.++.... ......+++|++|+++++.- .+....+..+. . ++|+.|+
T Consensus 107 n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~-~-~~L~~L~ 180 (844)
T 3j0a_A 107 C-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ-G-KTLSFFS 180 (844)
T ss_dssp C-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH-H-CSSCCCE
T ss_pred C-CCCcccccCccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECCCCcCCeeCHHHccccc-C-CccceEE
Confidence 8 45431111 124579999999999998766432 12234788999999997741 12223333331 2 8999999
Q ss_pred ecCccChHHHHHHHhhCC------CCeeecccccccccC-hhhHHHH-----------------------------HHHH
Q 008051 226 VNKSISLEQLQKLLVLAP------QLVDLGTGSFSQELT-DDQRAEL-----------------------------ESAF 269 (579)
Q Consensus 226 l~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~-~~~~~~l-----------------------------~~~~ 269 (579)
++++.-....+..+..++ .|+.|++........ ...+... ...+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 998762211111112222 488888875532211 0000000 0001
Q ss_pred hc--CcccccccCc-cccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCC
Q 008051 270 NK--CKNIHKLSGL-WQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCP 346 (579)
Q Consensus 270 ~~--~~~L~~L~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 346 (579)
.+ +++|+.|... ..+. .........+++|+.|++++|.+..... ..+..+++|+.|+++++.-..........++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 11 2345555411 1111 1112234568899999999998653321 1345789999999987532211112235678
Q ss_pred CCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCC
Q 008051 347 LLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNE 426 (579)
Q Consensus 347 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~ 426 (579)
+|+.|+++++. ++.... ....++++|+.|.+..+.++.. ..+++|+.|.++++. ++.+
T Consensus 339 ~L~~L~L~~N~---------i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~------l~~l 396 (844)
T 3j0a_A 339 KVAYIDLQKNH---------IAIIQD-QTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNK------LVTL 396 (844)
T ss_dssp TCCEEECCSCC---------CCCCCS-SCSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCC------CCCC
T ss_pred CCCEEECCCCC---------CCccCh-hhhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCC------cccc
Confidence 99999999653 221110 1124588999998877776531 137899999999765 3333
Q ss_pred ccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHH-
Q 008051 427 PMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDA- 504 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~- 504 (579)
+. ...+++.|++++ .+.+.........+++|+.|++++|.++..........+++|+.|++++|.+...
T Consensus 397 ~~---------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 397 PK---------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CC---------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred cc---------cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence 21 246899999987 3554444444457899999999999876422122234478999999999987521
Q ss_pred ---HHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 505 ---ALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 505 ---~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
.....+.++++|+.|++++|.++......+ ..+++++.-.+..+..
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF-SHLTALRGLSLNSNRL 516 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS-SSCCSCSEEEEESCCC
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhHc-cchhhhheeECCCCCC
Confidence 112346778999999999999764322222 3456676666666533
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=3.4e-19 Score=180.15 Aligned_cols=357 Identities=10% Similarity=0.012 Sum_probs=217.0
Q ss_pred CCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccc-cccccccccccCCccceeecccccCCCCHHHHHHHHH
Q 008051 138 PNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDI-SGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVS 216 (579)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 216 (579)
++|++|+++++ .++... +..+..+++|++|++++|.+... ... ....+++|++|+++++. +... .+..+.
T Consensus 30 ~~l~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~----~~~~l~~L~~L~Ls~n~--l~~~-~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNN----TFRGLSSLIILKLDYNQ--FLQL-ETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTT----TTTTCTTCCEEECTTCT--TCEE-CTTTTT
T ss_pred CccCEEEecCC-ccCcCC-hhHhccCccccEEECcCCcccceECcc----cccccccCCEEeCCCCc--cCcc-Chhhcc
Confidence 68999999988 565421 33445799999999999976422 111 23367899999999874 2211 122346
Q ss_pred hCCCCCeeEecCccChHHHHH--HHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhh
Q 008051 217 RCKSLKDLKVNKSISLEQLQK--LLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSP 294 (579)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~ 294 (579)
.+++|++|+++++.-...... .+..+++|++|++..... .......+..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-----------------------------~~~~~~~~~~ 151 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-----------------------------KKIQPASFFL 151 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-----------------------------CSCCCCGGGG
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc-----------------------------CccCcccccC
Confidence 789999999998863222222 256667777776643221 1111112234
Q ss_pred cCCCCCeeeeccccCCcHHHHHHH-HcCCcCcEEeccCc-cChH-----HHHHH--hccCCCCceEEEecCCCCcchhcc
Q 008051 295 VCANLTFLNLSYATLGSSELVKLL-MHCPLLKRLWVLDT-VEDR-----GLEAV--GSSCPLLEELRVFPADPFDEEITY 365 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~l~~~-~~~~-----~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~ 365 (579)
.+++|++|++++|.+.......+. ...++|+.|+++++ ..+. +.... ...+++|+.|+++++.
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-------- 223 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-------- 223 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--------
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc--------
Confidence 678999999999875432211111 12267888888763 1110 00000 1234789999998553
Q ss_pred cchhHHHHHHHc--CCCcchhhhhcCcCCCHHH----------HHHH-HHhCCCCceEEeeccCCCCCCccCCCccchHH
Q 008051 366 GVTEAGFLAVSH--GCPRLQYVLYFCQAMTNAA----------VATI-VRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAF 432 (579)
Q Consensus 366 ~~~~~~~~~l~~--~~~~L~~L~~~~~~~~~~~----------l~~l-~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~ 432 (579)
++......+.. ..++|+.|.+..+...... ...+ .-.+++|+.|+++++. +...+
T Consensus 224 -l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~------l~~~~----- 291 (455)
T 3v47_A 224 -FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK------IFALL----- 291 (455)
T ss_dssp -CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC------CCEEC-----
T ss_pred -ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc------ccccc-----
Confidence 44443333322 1367777754432111100 0000 1124689999998764 33211
Q ss_pred HHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHh
Q 008051 433 GAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLD 511 (579)
Q Consensus 433 ~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 511 (579)
...+..+++|+.|+++++ +++.... ....+++|+.|++++|.++... ...+.++++|++|++++|.++.. .+..+.
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 368 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRAL-GDQSFL 368 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCEE-CTTTTT
T ss_pred hhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCccccc-Chhhcc
Confidence 122356899999999873 4432211 2246789999999999986532 22346789999999999988764 346678
Q ss_pred cCCCCcEEEecccccChhHHHHHhhcCCCceEEEecccccccccc
Q 008051 512 KCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESDDNQA 556 (579)
Q Consensus 512 ~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~~~~~~ 556 (579)
.+++|+.|++++|+++...... ...+++++.-.+.+++...+.+
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccEEECCCCccccCCHhH-hccCCcccEEEccCCCcccCCC
Confidence 8999999999999977533222 2467888888888887665554
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=6.3e-20 Score=195.62 Aligned_cols=351 Identities=11% Similarity=0.068 Sum_probs=195.8
Q ss_pred HhcCCCCCeeeecCcccChH----------------HHHHHH--hhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEe
Q 008051 109 ADRYPSLEELRLKRMSVSDE----------------SLEFLA--VSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELD 170 (579)
Q Consensus 109 ~~~~~~L~~L~l~~~~i~~~----------------~l~~l~--~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (579)
...+++|++|+|+++.++.+ .+..-. ..+++|++|++++|..... ++..+.++++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEE
Confidence 44789999999999998872 122111 2678999999999843333 345556899999999
Q ss_pred ccCCC-ccc-cccccccc---ccccCCccceeecccccCCCCHHHHHH--HHHhCCCCCeeEecCccChHHHHHHHhhCC
Q 008051 171 IQENG-IED-ISGSWLSC---FPESFTSLEVLNFANVNSEVDFDALEK--LVSRCKSLKDLKVNKSISLEQLQKLLVLAP 243 (579)
Q Consensus 171 l~~~~-i~~-~~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 243 (579)
+++|. ++. .-...+.. ....+++|++|+++++. ++ .++. .+..+++|+.|+++++. +..++ .+..++
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~ 595 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LE--EFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNV 595 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CC--BCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTS
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CC--ccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCC
Confidence 99997 765 22222222 12356799999999885 44 4444 56899999999999886 22333 445556
Q ss_pred CCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCC-CCeeeeccccCCcHHHHHHHHcC-
Q 008051 244 QLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCAN-LTFLNLSYATLGSSELVKLLMHC- 321 (579)
Q Consensus 244 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~- 321 (579)
+|+.|++...... .++.....+++ |+.|++++|.+. .+...+...
T Consensus 596 ~L~~L~Ls~N~l~-------------------------------~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~ 642 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-------------------------------EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKS 642 (876)
T ss_dssp EESEEECCSSCCS-------------------------------CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTC
T ss_pred cceEEECcCCccc-------------------------------cchHHHhhccccCCEEECcCCCCC--cCchhhhccc
Confidence 6666655432211 11112224455 777777766643 111111122
Q ss_pred -CcCcEEeccCccChHHHHHHh-----ccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHH
Q 008051 322 -PLLKRLWVLDTVEDRGLEAVG-----SSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNA 395 (579)
Q Consensus 322 -~~L~~L~l~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~ 395 (579)
++|+.|+++++.-...+..+. ..+++|+.|+++++. ++... ..+...+++|+.|.+..+.++..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---------L~~lp-~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE---------IQKFP-TELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC---------CCSCC-HHHHHTTCCCSEEECCSCCCSCC
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc---------CCccC-HHHHccCCCCCEEECCCCcCCcc
Confidence 236666666542111111000 122466666666442 22111 11222356666665554444410
Q ss_pred HHHHHH-------HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcC
Q 008051 396 AVATIV-------RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLE 467 (579)
Q Consensus 396 ~l~~l~-------~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 467 (579)
...+. ..+++|+.|+++++. ++.+|..-. ...+++|+.|+++++ ++. +..-...+++|+
T Consensus 713 -p~~~~~~~~~~l~nl~~L~~L~Ls~N~------L~~lp~~l~----~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~ 779 (876)
T 4ecn_A 713 -PENSLKPKDGNYKNTYLLTTIDLRFNK------LTSLSDDFR----ATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLK 779 (876)
T ss_dssp -CTTSSSCTTSCCTTGGGCCEEECCSSC------CCCCCGGGS----TTTCTTCCEEECCSSCCSS--CCCGGGGCTTCC
T ss_pred -ChHHhccccccccccCCccEEECCCCC------CccchHHhh----hccCCCcCEEEeCCCCCCc--cchhhhcCCCCC
Confidence 00011 123377788887654 333221100 025678888888773 443 222234677888
Q ss_pred eeeccc------cCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 468 LLSVAF------AGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 468 ~L~l~~------~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
.|++++ |.+.. .+...+.++++|++|++++|.++. ++..+ .++|+.|+|++|++..
T Consensus 780 ~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L~~--Ip~~l--~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDIRK--VDEKL--TPQLYILDIADNPNIS 841 (876)
T ss_dssp EEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCCCB--CCSCC--CSSSCEEECCSCTTCE
T ss_pred EEECCCCCCcccccccc-cChHHHhcCCCCCEEECCCCCCCc--cCHhh--cCCCCEEECCCCCCCc
Confidence 888866 33332 112233557888888888887743 33322 2678888888887543
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=4.2e-20 Score=193.73 Aligned_cols=359 Identities=12% Similarity=0.093 Sum_probs=225.2
Q ss_pred HHHHHhhCCCCCeEeccCCCcccc--cccc-----------cccccc--cCCccceeecccccCCCCHHHHHHHHHhCCC
Q 008051 156 LAAIATNCKNLTELDIQENGIEDI--SGSW-----------LSCFPE--SFTSLEVLNFANVNSEVDFDALEKLVSRCKS 220 (579)
Q Consensus 156 l~~~~~~~~~L~~L~l~~~~i~~~--~~~~-----------l~~l~~--~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 220 (579)
++..+.++++|++|++++|.++.. ...| +..... .+++|++|+++++. +.. .++..+.++++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~-~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLT-KLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCS-SCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCc-cChHHHhcCCC
Confidence 445566899999999999987762 1112 333333 67899999999874 111 22344578999
Q ss_pred CCeeEecCccChH--HHHHHHhhC------CCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhh
Q 008051 221 LKDLKVNKSISLE--QLQKLLVLA------PQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPAL 292 (579)
Q Consensus 221 L~~L~l~~~~~~~--~l~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~ 292 (579)
|++|+++++..+. .++..+..+ ++|++|++........+. ...+..+++|+.|....+.-...++ .
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-----~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-----ETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-----HHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-----hhhhccCCCCCEEeCcCCcCccchh-h
Confidence 9999999986232 467666665 999999987655432111 0145778888888722211111222 3
Q ss_pred hhcCCCCCeeeeccccCCcHHHHHHHHcCCc-CcEEeccCccChHHHHHHhcc--CCCCceEEEecCCCCcchhcccchh
Q 008051 293 SPVCANLTFLNLSYATLGSSELVKLLMHCPL-LKRLWVLDTVEDRGLEAVGSS--CPLLEELRVFPADPFDEEITYGVTE 369 (579)
Q Consensus 293 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~ 369 (579)
...+++|++|++++|.+. .+...+..+++ |+.|+++++.-. .+...... +++|+.|+++++. ++.
T Consensus 349 ~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~---------l~~ 416 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE---------IGS 416 (636)
T ss_dssp CEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC---------TTT
T ss_pred hCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc---------CCC
Confidence 346788999999999854 22223456778 999999875222 22222222 3479999998654 322
Q ss_pred HHHHHHH------cCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHH---HhcCc
Q 008051 370 AGFLAVS------HGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAV---VRTCT 440 (579)
Q Consensus 370 ~~~~~l~------~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~ 440 (579)
.....+. -.+++|+.|.+..+.++. ....+...+++|+.|+++++. ++.++.. .+... ..+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~------l~~i~~~-~~~~~~~~~~~l~ 488 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNM------LTEIPKN-SLKDENENFKNTY 488 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSC------CSBCCSS-SSEETTEECTTGG
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCC------CCCcCHH-HhccccccccccC
Confidence 1100111 035689999887777762 223345578999999999765 3332221 00000 11234
Q ss_pred ccceeecccc-cChHHHHHHH--hcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecC------CCCCHHHHHHHHh
Q 008051 441 NLQRLSLSGL-LTDLTFEYIG--QYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRD------CPFGDAALLSGLD 511 (579)
Q Consensus 441 ~L~~L~l~~~-~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~------~~~~~~~~~~~l~ 511 (579)
+|+.|+++++ ++ .+.... ..+++|+.|++++|.++. +...+..+++|++|++++ |.+... ++..+.
T Consensus 489 ~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~ 563 (636)
T 4eco_A 489 LLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGIT 563 (636)
T ss_dssp GCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGG
T ss_pred CccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHh
Confidence 8999999883 44 222222 278999999999999875 333445689999999954 555443 456778
Q ss_pred cCCCCcEEEecccccChhHHHHHhhcCCCceEEEecccccc
Q 008051 512 KCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAESD 552 (579)
Q Consensus 512 ~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~~ 552 (579)
++++|+.|++++|.++.-... ..+.++.-.+..++..
T Consensus 564 ~l~~L~~L~Ls~N~l~~ip~~----~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 564 LCPSLTQLQIGSNDIRKVNEK----ITPNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSSCCCBCCSC----CCTTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcCCccCHh----HhCcCCEEECcCCCCc
Confidence 899999999999997432111 2267777777777543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.2e-18 Score=179.65 Aligned_cols=322 Identities=14% Similarity=0.113 Sum_probs=183.9
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
..+++.++++++.++...-..+ ..+++|+.|+++++ .++... +..+..+++|++|++++|.++......+ ..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVF----QNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHH-HHCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TTC
T ss_pred CCCceEEEeeCCCCCCcCHHHH-ccCCCCcEEECCCC-CCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHH----cCC
Confidence 5778888888876554332333 37788888888887 454421 1234478888888888887766543332 356
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNK 271 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 271 (579)
++|++|+++++. ++. ..+.++..+++|++|+++++.-....+..+.
T Consensus 123 ~~L~~L~L~~n~--l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------- 168 (597)
T 3oja_B 123 PLLTVLVLERND--LSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ------------------------------- 168 (597)
T ss_dssp TTCCEEECCSSC--CCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-------------------------------
T ss_pred CCCCEEEeeCCC--CCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhh-------------------------------
Confidence 788888888763 221 1112235677888888877651110011122
Q ss_pred CcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceE
Q 008051 272 CKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEEL 351 (579)
Q Consensus 272 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 351 (579)
.+++|+.|++++|.++... ...+++|+.|+++++.-.. ....++|+.|
T Consensus 169 -----------------------~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L 216 (597)
T 3oja_B 169 -----------------------ATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-----LAIPIAVEEL 216 (597)
T ss_dssp -----------------------TCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSE-----EECCTTCSEE
T ss_pred -----------------------cCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcccc-----ccCCchhhee
Confidence 3344555555544432211 2234455555554321110 0123445555
Q ss_pred EEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchH
Q 008051 352 RVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEA 431 (579)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~ 431 (579)
+++++. ++... ....++|+.|.+..+.+++. .....+++|+.|+++++. +...+.
T Consensus 217 ~ls~n~---------l~~~~----~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~------l~~~~~--- 271 (597)
T 3oja_B 217 DASHNS---------INVVR----GPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE------LEKIMY--- 271 (597)
T ss_dssp ECCSSC---------CCEEE----CSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC------CCEEES---
T ss_pred eccCCc---------ccccc----cccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc------cCCCCH---
Confidence 555332 11100 00123455554444444432 122367888888888754 332211
Q ss_pred HHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHH
Q 008051 432 FGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGL 510 (579)
Q Consensus 432 ~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 510 (579)
..+..+++|+.|+++++ ++. +......+++|+.|++++|.++. +...+..+++|+.|++++|.++.. .+
T Consensus 272 --~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~----~~ 341 (597)
T 3oja_B 272 --HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTL----KL 341 (597)
T ss_dssp --GGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCC----CC
T ss_pred --HHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCc----Ch
Confidence 12345788999999873 333 11222457899999999998753 222234568999999999988753 26
Q ss_pred hcCCCCcEEEecccccChhHHHHHhhcCCCc
Q 008051 511 DKCESMRSLWMSACNVTMDGCKLLASKKPRL 541 (579)
Q Consensus 511 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l 541 (579)
..+++|+.|++++|+++-.....+...++..
T Consensus 342 ~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 372 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWDCNSLRALFRNVARP 372 (597)
T ss_dssp CTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred hhcCCCCEEEeeCCCCCChhHHHHHHHHhhh
Confidence 7789999999999998877666665544443
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.6e-18 Score=176.12 Aligned_cols=180 Identities=19% Similarity=0.129 Sum_probs=104.3
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+++++|+++++.++......+. .+++|++|+++++ .++... +..+.++++|++|++++|.++......+ ..++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVF----TGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSS----TTCT
T ss_pred CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCCcCCccCcccc----cCCC
Confidence 5788888888876654333333 6788888888887 454421 2334578888888888887665443222 2567
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcC
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKC 272 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~ 272 (579)
+|++|+++++. +... .+..+..+++|++|+++++. + +.+
T Consensus 105 ~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~l~~n~-l-------------~~~------------------------ 143 (477)
T 2id5_A 105 NLTKLDISENK--IVIL-LDYMFQDLYNLKSLEVGDND-L-------------VYI------------------------ 143 (477)
T ss_dssp TCCEEECTTSC--CCEE-CTTTTTTCTTCCEEEECCTT-C-------------CEE------------------------
T ss_pred CCCEEECCCCc--cccC-ChhHccccccCCEEECCCCc-c-------------cee------------------------
Confidence 88888887663 2211 11223566777777777664 0 000
Q ss_pred cccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEE
Q 008051 273 KNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELR 352 (579)
Q Consensus 273 ~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 352 (579)
. ......+++|++|++++|.++... ...+..+++|+.|+++++............+++|+.|+
T Consensus 144 ------------~----~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 144 ------------S----HRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp ------------C----TTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred ------------C----hhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 0 011124667777888777644322 12345677788877765321111111224567888888
Q ss_pred EecCC
Q 008051 353 VFPAD 357 (579)
Q Consensus 353 l~~~~ 357 (579)
++++.
T Consensus 207 l~~~~ 211 (477)
T 2id5_A 207 ISHWP 211 (477)
T ss_dssp EECCT
T ss_pred CCCCc
Confidence 87543
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=4.6e-18 Score=176.33 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=107.4
Q ss_pred CcCcEEeccCcc-ChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHH-HHHH
Q 008051 322 PLLKRLWVLDTV-EDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNA-AVAT 399 (579)
Q Consensus 322 ~~L~~L~l~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~-~l~~ 399 (579)
++|+.|+++++. .... ....+++|+.|+++++. +++... ....++++|+.|.+..+.++.. .+..
T Consensus 331 ~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~---------l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNV---------FTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp CCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSC---------CCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred CcceEEEccCCCccccc---CccCCCCceEEECCCCc---------cccchh-hhhcccCCCCEEECCCCCcCCcccchh
Confidence 456666666531 1100 01356788888888553 333111 1124577888887777777642 1222
Q ss_pred HHHhCCCCceEEeeccCCCCCCccCC-CccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcc-cCcCeeeccccCC
Q 008051 400 IVRNCPNFTCFRLCIMNPGQPDYVTN-EPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYA-KNLELLSVAFAGS 476 (579)
Q Consensus 400 l~~~~~~L~~L~l~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~i 476 (579)
....+++|+.|+++++. ++. .+.. ....+++|+.|+++++ ++.... ..+ ++|+.|++++|.+
T Consensus 398 ~~~~l~~L~~L~l~~N~------l~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~l 462 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNS------LNSHAYDR-----TCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRI 462 (562)
T ss_dssp TTTTCTTCCEEECTTSC------CBSCCSSC-----CCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSCC
T ss_pred hhcCCCCCCEEECCCCc------CCCccChh-----hhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCcC
Confidence 23467889999988765 332 2211 1234688999999873 543221 233 6899999999987
Q ss_pred ChHHHHHHHhCCCcCcEEEecCCCCCHHHHHH-HHhcCCCCcEEEecccccC
Q 008051 477 SDWGMQCVLRGCPKLRKFEIRDCPFGDAALLS-GLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 477 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~ 527 (579)
+. +...+..+++|++|++++|.++. ++. .+..+++|+.|++++|+++
T Consensus 463 ~~--ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 463 MS--IPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CC--CCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBC
T ss_pred cc--cChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcC
Confidence 62 22222367899999999998874 333 3778899999999999864
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.68 E-value=3.8e-18 Score=176.95 Aligned_cols=391 Identities=13% Similarity=0.109 Sum_probs=208.5
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++|++|+++++.++......+. .+++|++|+++++ .++... +..+..+++|++|++++|.++..... .++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~-------~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSHNRLQNISCC-------PMA 121 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECSC-------CCT
T ss_pred CCcCEEECCCCCccccChhhhc-cCCCccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCCCcCCccCcc-------ccc
Confidence 7889999998876654333333 7788999999988 555421 23345788999999999887643321 577
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCC--eeeccccccc--ccChhhHHHHHHH
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQL--VDLGTGSFSQ--ELTDDQRAELESA 268 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~l~~~ 268 (579)
+|++|+++++. +..-.++..+..+++|++|+++++.- .. ..+..+++| +.|++..... ..... ..
T Consensus 122 ~L~~L~Ls~N~--l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~------~~ 190 (562)
T 3a79_B 122 SLRHLDLSFND--FDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDLLPVAHLHLSCILLDLVSYHIKGGET------ES 190 (562)
T ss_dssp TCSEEECCSSC--CSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTTGGGTTSCEEEEEEEESSCCCCSSSC------CE
T ss_pred cCCEEECCCCC--ccccCchHhhcccCcccEEecCCCcc-cc--CchhhhhhceeeEEEeecccccccccCc------cc
Confidence 89999998774 33212223457888999999988762 11 123344555 7777654322 11000 00
Q ss_pred HhcCc--------------------------ccccccCccc-cc---cchHhhhhhcCCCCCeeeeccccCCcHHHHHHH
Q 008051 269 FNKCK--------------------------NIHKLSGLWQ-AT---ALYFPALSPVCANLTFLNLSYATLGSSELVKLL 318 (579)
Q Consensus 269 ~~~~~--------------------------~L~~L~~~~~-~~---~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~ 318 (579)
+..+. +|+.+....+ .. ...........++|+.+++.++.+.+..+..+.
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 11111 0011100000 00 000000112344444555544444433333222
Q ss_pred --HcCCcCcEEeccCc-cCh-------------------------------HHHHHHhccCCCCceEEEecCCCCcchhc
Q 008051 319 --MHCPLLKRLWVLDT-VED-------------------------------RGLEAVGSSCPLLEELRVFPADPFDEEIT 364 (579)
Q Consensus 319 --~~~~~L~~L~l~~~-~~~-------------------------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 364 (579)
...++|+.|+++++ +.+ ..+..+.. ..+|+.|+++++.
T Consensus 271 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~------- 342 (562)
T 3a79_B 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTP------- 342 (562)
T ss_dssp HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSC-------
T ss_pred HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCC-------
Confidence 12235555555432 110 00000000 1223333333221
Q ss_pred ccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccce
Q 008051 365 YGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQR 444 (579)
Q Consensus 365 ~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~ 444 (579)
+.... ....+++|++|.+..+.+++.....+ ..+++|+.|+++++. ++.. ..+...+..+++|+.
T Consensus 343 --~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~------l~~~---~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 343 --FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNG------LKNF---FKVALMTKNMSSLET 407 (562)
T ss_dssp --CCCCC---CCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSC------CCBT---THHHHTTTTCTTCCE
T ss_pred --ccccc---CccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCC------cCCc---ccchhhhcCCCCCCE
Confidence 10000 00346777877777666665332223 357788888887654 3321 122233456788888
Q ss_pred eecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCC-CcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEec
Q 008051 445 LSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGC-PKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMS 522 (579)
Q Consensus 445 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 522 (579)
|+++++ ++..........+++|+.|++++|.+++... ..+ ++|++|++++|.++. ++..+..+++|+.|+++
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVA 481 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECC
Confidence 888773 3321111123456888999998888865322 233 689999999998873 44445588999999999
Q ss_pred ccccChhHHHHHhhcCCCceEEEecccccccc
Q 008051 523 ACNVTMDGCKLLASKKPRLNVEVIKEAESDDN 554 (579)
Q Consensus 523 ~~~i~~~~~~~l~~~~p~l~~~~~~~~~~~~~ 554 (579)
+|+++.-... ....+++++.-.+.+++..-+
T Consensus 482 ~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 482 SNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCCCCCTT-STTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCCHH-HHhcCCCCCEEEecCCCcCCC
Confidence 9997632111 234577887777777765443
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=1.1e-17 Score=165.19 Aligned_cols=323 Identities=15% Similarity=0.119 Sum_probs=190.0
Q ss_pred hCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCC
Q 008051 72 RFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGF 151 (579)
Q Consensus 72 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 151 (579)
..++++.+++.++. +... | ..+...+++|++|+++++.+++.....+. .+++|++|+++++ .+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l---~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKL---P-----------AALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFN-AI 105 (390)
T ss_dssp GGCCCSEEEEESCE-ESEE---C-----------THHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CC
T ss_pred ccCCceEEEecCCc-hhhC---C-----------hhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCC-CC
Confidence 35778888887653 2111 1 12345789999999999887654333333 7789999999988 45
Q ss_pred ChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccC
Q 008051 152 STDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSIS 231 (579)
Q Consensus 152 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 231 (579)
+.. .+..+..+++|++|++++|.++...... ...+++|++|+++++. +... .+..+..+++|++|+++++.
T Consensus 106 ~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~- 176 (390)
T 3o6n_A 106 RYL-PPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNN--LERI-EDDTFQATTSLQNLQLSSNR- 176 (390)
T ss_dssp CCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSC--CCBC-CTTTTSSCTTCCEEECCSSC-
T ss_pred CcC-CHHHhcCCCCCCEEECCCCccCcCCHHH----hcCCCCCcEEECCCCc--cCcc-ChhhccCCCCCCEEECCCCc-
Confidence 432 1233457899999999999877544322 2367899999999774 2211 11224678899999998876
Q ss_pred hHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCc
Q 008051 232 LEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGS 311 (579)
Q Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 311 (579)
+..+ -+..+++|+.+++.... +. . ....++|++|++++|.+..
T Consensus 177 l~~~--~~~~l~~L~~L~l~~n~-----------------------------l~-----~-~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 177 LTHV--DLSLIPSLFHANVSYNL-----------------------------LS-----T-LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CSBC--CGGGCTTCSEEECCSSC-----------------------------CS-----E-EECCSSCSEEECCSSCCCE
T ss_pred CCcc--ccccccccceeeccccc-----------------------------cc-----c-cCCCCcceEEECCCCeeee
Confidence 1110 02233344444332110 00 0 0123456666666665432
Q ss_pred HHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCc
Q 008051 312 SELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQ 390 (579)
Q Consensus 312 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~ 390 (579)
... ...++|+.|+++++ +.+. .....+++|+.|+++++
T Consensus 220 ~~~----~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n---------------------------------- 258 (390)
T 3o6n_A 220 VRG----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN---------------------------------- 258 (390)
T ss_dssp EEC----CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS----------------------------------
T ss_pred ccc----cccccccEEECCCCCCccc---HHHcCCCCccEEECCCC----------------------------------
Confidence 210 12355666666543 2211 11234556666666533
Q ss_pred CCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCee
Q 008051 391 AMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELL 469 (579)
Q Consensus 391 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 469 (579)
.++......+ ..+++|+.|+++++. ++..+. ....+++|+.|+++++ +... ......+++|+.|
T Consensus 259 ~l~~~~~~~~-~~l~~L~~L~L~~n~------l~~~~~------~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L 323 (390)
T 3o6n_A 259 ELEKIMYHPF-VKMQRLERLYISNNR------LVALNL------YGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENL 323 (390)
T ss_dssp CCCEEESGGG-TTCSSCCEEECCSSC------CCEEEC------SSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEE
T ss_pred cCCCcChhHc-cccccCCEEECCCCc------CcccCc------ccCCCCCCCEEECCCCcceec--CccccccCcCCEE
Confidence 2221111111 256788888887654 332211 1135688999999873 3321 1112457899999
Q ss_pred eccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCc
Q 008051 470 SVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMR 517 (579)
Q Consensus 470 ~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 517 (579)
++++|.++... ...+++|++|++++|++..+.....+..++...
T Consensus 324 ~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 324 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp ECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred ECCCCccceeC----chhhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 99999986543 356899999999999998887777776655544
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=3.2e-17 Score=164.30 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=123.8
Q ss_pred HhhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCC
Q 008051 70 TRRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCD 149 (579)
Q Consensus 70 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 149 (579)
+..++++++|+++++. +... | -...+++|++|+++++.++... ...+++|++|+++++
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~---~-------------~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N- 95 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM---T-------------GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSN- 95 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC---T-------------TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS-
T ss_pred hhHcCCCCEEEccCCC-cccC---h-------------hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCC-
Confidence 3457888999998763 2211 1 0246788999999988877632 337788999999988
Q ss_pred CCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCc
Q 008051 150 GFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKS 229 (579)
Q Consensus 150 ~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 229 (579)
.++.. + +..+++|++|++++|.++... ...+++|++|+++++. ++.- + +..+++|+.|+++++
T Consensus 96 ~l~~~--~--~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~--l~~l--~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 96 KLTNL--D--VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNT--LTEI--D--VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSCC--C--CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSC--CSCC--C--CTTCTTCCEEECTTC
T ss_pred CCcee--e--cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCc--ccee--c--cccCCcCCEEECCCC
Confidence 45542 2 457889999999998876542 2356789999988774 3321 1 467888888888887
Q ss_pred cChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccC
Q 008051 230 ISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATL 309 (579)
Q Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 309 (579)
.....+ .+..+++|+.|++....... ++ ...+++|+.|++++|.+
T Consensus 159 ~~~~~~--~~~~l~~L~~L~ls~n~l~~-------------------------------l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 159 KKITKL--DVTPQTQLTTLDCSFNKITE-------------------------------LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp SCCCCC--CCTTCTTCCEEECCSSCCCC-------------------------------CC--CTTCTTCCEEECCSSCC
T ss_pred Cccccc--ccccCCcCCEEECCCCccce-------------------------------ec--cccCCCCCEEECcCCcC
Confidence 422222 13455666666664332211 00 22455666666666654
Q ss_pred CcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecC
Q 008051 310 GSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPA 356 (579)
Q Consensus 310 ~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~ 356 (579)
+... +..+++|+.|+++++ +.. +. ...+++|+.|+++++
T Consensus 204 ~~~~----l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 204 TKLD----LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SCCC----CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSS
T ss_pred Ceec----cccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCC
Confidence 3321 345566666666553 222 11 234566666666643
No 44
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=5.6e-15 Score=143.93 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=52.8
Q ss_pred ccceeeccc-ccChHHHHHHHh----cccCcCeeeccccCCChHHH---HHHHhCCCcCcEEEecCCC---CCHHHHHHH
Q 008051 441 NLQRLSLSG-LLTDLTFEYIGQ----YAKNLELLSVAFAGSSDWGM---QCVLRGCPKLRKFEIRDCP---FGDAALLSG 509 (579)
Q Consensus 441 ~L~~L~l~~-~~~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~L~~L~l~~~~---~~~~~~~~~ 509 (579)
+|+.|++++ .+++.+...+.. ..++|+.|++++|.+++.+. ..++..+++|++|++++|. +++..+..+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 566666655 244433332222 23577777777777765443 3334456778888888875 555444333
Q ss_pred ---HhcCCCCcEEEecccccChhH
Q 008051 510 ---LDKCESMRSLWMSACNVTMDG 530 (579)
Q Consensus 510 ---l~~~~~L~~L~l~~~~i~~~~ 530 (579)
+.++++|+.|++++|++...+
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHhccCCceEEEecCCCcCCCcc
Confidence 345566777778888776653
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=6.1e-17 Score=162.23 Aligned_cols=223 Identities=20% Similarity=0.191 Sum_probs=149.9
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+++|++|+++++.+++. ..+ ..+++|++|+++++ .++.. + +..+++|++|++++|.++... ...
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~~l-~~l~~L~~L~Ls~n-~l~~~--~--~~~l~~L~~L~Ls~N~l~~~~-------~~~ 104 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--TGI-EKLTGLTKLICTSN-NITTL--D--LSQNTNLTYLACDSNKLTNLD-------VTP 104 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--TTG-GGCTTCSEEECCSS-CCSCC--C--CTTCTTCSEEECCSSCCSCCC-------CTT
T ss_pred HcCCCCEEEccCCCcccC--hhh-cccCCCCEEEccCC-cCCeE--c--cccCCCCCEEECcCCCCceee-------cCC
Confidence 468899999999887753 233 37889999999988 56552 2 457899999999999877642 236
Q ss_pred CCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHh
Q 008051 191 FTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFN 270 (579)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 270 (579)
+++|++|+++++. ++. ++ +..+++|++|+++++. +.+++ +..+++|+.|++.....
T Consensus 105 l~~L~~L~L~~N~--l~~--l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~--------------- 160 (457)
T 3bz5_A 105 LTKLTYLNCDTNK--LTK--LD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKK--------------- 160 (457)
T ss_dssp CTTCCEEECCSSC--CSC--CC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSC---------------
T ss_pred CCcCCEEECCCCc--CCe--ec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCc---------------
Confidence 7899999999774 332 11 4678899999998876 22221 34455566655532211
Q ss_pred cCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCc
Q 008051 271 KCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLE 349 (579)
Q Consensus 271 ~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~ 349 (579)
.+.. -...+++|++|++++|.++.-. +..+++|+.|+++++ +.... ...+++|+
T Consensus 161 -------------~~~~----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~ 215 (457)
T 3bz5_A 161 -------------ITKL----DVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD----LNQNIQLT 215 (457)
T ss_dssp -------------CCCC----CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC----CTTCTTCS
T ss_pred -------------cccc----ccccCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec----cccCCCCC
Confidence 1111 1235789999999999865522 567899999999874 33321 35679999
Q ss_pred eEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeec
Q 008051 350 ELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCI 414 (579)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 414 (579)
.|+++++. ++... ...+++|+.|.+..+.++... ...+++|+.|.++.
T Consensus 216 ~L~Ls~N~---------l~~ip----~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 216 FLDCSSNK---------LTEID----VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQ 263 (457)
T ss_dssp EEECCSSC---------CSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTT
T ss_pred EEECcCCc---------ccccC----ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccC
Confidence 99999653 44422 345788888877776665432 23567777776543
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=7.7e-17 Score=168.04 Aligned_cols=299 Identities=15% Similarity=0.102 Sum_probs=175.9
Q ss_pred HHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccc
Q 008051 108 FADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCF 187 (579)
Q Consensus 108 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 187 (579)
+...+++|++|+++++.++......+. .+++|++|+++++ .++.. .+..+.++++|++|++++|.++......
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~---- 142 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFN-AIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGI---- 142 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT----
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCC-cCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHH----
Confidence 345789999999999987754333343 7889999999988 45442 2234457999999999999877544322
Q ss_pred cccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHH
Q 008051 188 PESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELES 267 (579)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 267 (579)
...+++|++|+++++. +... .+..+..+++|++|+++++. +..+ -+..+++|+.|++....
T Consensus 143 ~~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~l~~L~~L~l~~n~------------- 203 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNN--LERI-EDDTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYNL------------- 203 (597)
T ss_dssp TTTCTTCCEEECCSSC--CCBC-CTTTTTTCTTCCEEECTTSC-CSBC--CGGGCTTCSEEECCSSC-------------
T ss_pred hccCCCCCEEEeeCCc--CCCC-ChhhhhcCCcCcEEECcCCC-CCCc--ChhhhhhhhhhhcccCc-------------
Confidence 2367899999999874 2211 12234678999999999886 1111 02233344444332110
Q ss_pred HHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCC
Q 008051 268 AFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCP 346 (579)
Q Consensus 268 ~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~ 346 (579)
+. . ....++|+.|++++|.+..... ...++|+.|+++++ +.+. .....++
T Consensus 204 ----------------l~-----~-l~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~---~~l~~l~ 254 (597)
T 3oja_B 204 ----------------LS-----T-LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT---AWLLNYP 254 (597)
T ss_dssp ----------------CS-----E-EECCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC---GGGGGCT
T ss_pred ----------------cc-----c-ccCCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC---hhhccCC
Confidence 00 0 0123456666666665322110 11245666666543 2211 1123455
Q ss_pred CCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCC
Q 008051 347 LLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNE 426 (579)
Q Consensus 347 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~ 426 (579)
+|+.|+++++ .++......+ ..+++|+.|+++++. ++..
T Consensus 255 ~L~~L~Ls~N----------------------------------~l~~~~~~~~-~~l~~L~~L~Ls~N~------l~~l 293 (597)
T 3oja_B 255 GLVEVDLSYN----------------------------------ELEKIMYHPF-VKMQRLERLYISNNR------LVAL 293 (597)
T ss_dssp TCSEEECCSS----------------------------------CCCEEESGGG-TTCSSCCEEECTTSC------CCEE
T ss_pred CCCEEECCCC----------------------------------ccCCCCHHHh-cCccCCCEEECCCCC------CCCC
Confidence 5666665533 2222111112 256778888877654 3322
Q ss_pred ccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHH
Q 008051 427 PMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAA 505 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 505 (579)
+. ....+++|+.|+++++ ++. +......+++|+.|++++|.++... ...+++|+.|++++|++....
T Consensus 294 ~~------~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 294 NL------YGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EC------SSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred Cc------ccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence 11 1134688888888873 332 2211245788999999999876532 355789999999999988776
Q ss_pred HHHHHhcCC
Q 008051 506 LLSGLDKCE 514 (579)
Q Consensus 506 ~~~~l~~~~ 514 (579)
....+....
T Consensus 362 ~~~~~~~~~ 370 (597)
T 3oja_B 362 LRALFRNVA 370 (597)
T ss_dssp HHHHTTTCC
T ss_pred HHHHHHHHh
Confidence 666665443
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=4.4e-14 Score=137.57 Aligned_cols=238 Identities=11% Similarity=0.085 Sum_probs=165.8
Q ss_pred HhhhhhcCCCCCeeeeccccCCcH---HHHHHHHcCC-cCcEEeccCc-cChHHHHHHh---cc-CCCCceEEEecCCCC
Q 008051 289 FPALSPVCANLTFLNLSYATLGSS---ELVKLLMHCP-LLKRLWVLDT-VEDRGLEAVG---SS-CPLLEELRVFPADPF 359 (579)
Q Consensus 289 l~~~~~~~~~L~~L~l~~~~~~~~---~l~~~~~~~~-~L~~L~l~~~-~~~~~l~~~~---~~-~~~L~~L~l~~~~~~ 359 (579)
++.+....++|++|++++|.+++. .+...+..++ +|+.|+++++ +.+.+...+. .. +++|+.|+++++.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc--
Confidence 444555666799999999985543 3445567788 8999999875 4443333332 33 3899999999664
Q ss_pred cchhcccchhH---HHHHHHcCC-CcchhhhhcCcCCCHHHHHHHHHh----CCCCceEEeeccCCCCCCccCCCccchH
Q 008051 360 DEEITYGVTEA---GFLAVSHGC-PRLQYVLYFCQAMTNAAVATIVRN----CPNFTCFRLCIMNPGQPDYVTNEPMDEA 431 (579)
Q Consensus 360 ~~~~~~~~~~~---~~~~l~~~~-~~L~~L~~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~i~~~~~~~~ 431 (579)
+++. .+......+ ++|++|.+..+.+++.....+... +++|+.|+++++. ++... ...
T Consensus 92 -------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~-~~~ 157 (362)
T 3goz_A 92 -------LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND------LGIKS-SDE 157 (362)
T ss_dssp -------GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC------GGGSC-HHH
T ss_pred -------CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc------CCHHH-HHH
Confidence 4443 344444445 799999888888877666655433 4699999999764 44111 123
Q ss_pred HHHHHhcCc-ccceeeccc-ccChHHHHHH---Hhcc-cCcCeeeccccCCChHHHHHHHh---C-CCcCcEEEecCCCC
Q 008051 432 FGAVVRTCT-NLQRLSLSG-LLTDLTFEYI---GQYA-KNLELLSVAFAGSSDWGMQCVLR---G-CPKLRKFEIRDCPF 501 (579)
Q Consensus 432 ~~~~~~~~~-~L~~L~l~~-~~~~~~~~~~---~~~~-~~L~~L~l~~~~i~~~~~~~l~~---~-~~~L~~L~l~~~~~ 501 (579)
+...+...+ +|+.|++++ .+++.+...+ ...+ ++|+.|++++|.+++.+...+.. . .++|++|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 333445555 999999988 4655554433 3445 59999999999987755443322 3 56999999999988
Q ss_pred CH---HHHHHHHhcCCCCcEEEecccc---cChhHHHHHhhcCCCce
Q 008051 502 GD---AALLSGLDKCESMRSLWMSACN---VTMDGCKLLASKKPRLN 542 (579)
Q Consensus 502 ~~---~~~~~~l~~~~~L~~L~l~~~~---i~~~~~~~l~~~~p~l~ 542 (579)
++ ..+...+..+++|+.|++++|. ++..++..+...+++++
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 77 3445566888999999999999 88888999888776654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=1.5e-17 Score=175.91 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=85.9
Q ss_pred CceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChH
Q 008051 75 NILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTD 154 (579)
Q Consensus 75 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 154 (579)
.+++|+|+++.- ... .+.. ...+++|++|+|+++.++...-..+. .+++|++|+|+++ .++..
T Consensus 53 ~~~~LdLs~N~i-~~l--~~~~------------f~~l~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N-~l~~l 115 (635)
T 4g8a_A 53 STKNLDLSFNPL-RHL--GSYS------------FFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN-PIQSL 115 (635)
T ss_dssp TCCEEECTTSCC-CEE--CTTT------------TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTC-CCCEE
T ss_pred CCCEEEeeCCCC-CCC--CHHH------------HhCCCCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCC-cCCCC
Confidence 588999987632 211 1111 14678899999998876643222333 6788999999987 45441
Q ss_pred HHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 155 GLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 155 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
. ...+.++++|++|++++|.++......+ ..+++|++|+++++. +.....+..+..+++|++|+++++.
T Consensus 116 ~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~~----~~L~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 116 A-LGAFSGLSSLQKLVAVETNLASLENFPI----GHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp C-GGGGTTCTTCCEEECTTSCCCCSTTCCC----TTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred C-HHHhcCCCCCCEEECCCCcCCCCChhhh----hcCcccCeeccccCc--cccCCCchhhccchhhhhhcccCcc
Confidence 1 2345578899999999988765443322 356788999988764 3322233445678888888888775
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=3.7e-17 Score=166.10 Aligned_cols=309 Identities=14% Similarity=0.052 Sum_probs=193.6
Q ss_pred CCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHh
Q 008051 138 PNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSR 217 (579)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~ 217 (579)
++++.|+++++ .++... ...+..+++|++|++++|.++......+ ..+++|++|+++++. ++.- ....+..
T Consensus 32 ~~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~--l~~~-~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLN-QDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNR--LKLI-PLGVFTG 102 (477)
T ss_dssp TTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECCSSC--CCSC-CTTSSTT
T ss_pred CCCcEEECCCC-ccceEC-HhHccCCCCCCEEECCCCccCEeChhhh----hCCccCCEEECCCCc--CCcc-CcccccC
Confidence 47899999987 555421 2334578999999999888766543333 256788888887663 2210 0112345
Q ss_pred CCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCC
Q 008051 218 CKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCA 297 (579)
Q Consensus 218 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~ 297 (579)
+++|++|+++++.- +. . .......++
T Consensus 103 l~~L~~L~Ls~n~i--------------~~------------------------------------~----~~~~~~~l~ 128 (477)
T 2id5_A 103 LSNLTKLDISENKI--------------VI------------------------------------L----LDYMFQDLY 128 (477)
T ss_dssp CTTCCEEECTTSCC--------------CE------------------------------------E----CTTTTTTCT
T ss_pred CCCCCEEECCCCcc--------------cc------------------------------------C----ChhHccccc
Confidence 67777777776640 00 0 111224678
Q ss_pred CCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHc
Q 008051 298 NLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSH 377 (579)
Q Consensus 298 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 377 (579)
+|++|++++|.+..... ..+..+++|+.|+++++.-..........+++|+.|+++++. +..... ....
T Consensus 129 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~---------i~~~~~-~~~~ 197 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN---------INAIRD-YSFK 197 (477)
T ss_dssp TCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC---------CCEECT-TCSC
T ss_pred cCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc---------CcEeCh-hhcc
Confidence 99999999988543221 123578999999998752222222233568999999999653 222111 1123
Q ss_pred CCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHH
Q 008051 378 GCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTF 456 (579)
Q Consensus 378 ~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~ 456 (579)
.+++|+.|.+..+........... ...+|+.|+++++. ++..+. ..+..+++|+.|+++++ ++....
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~------l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN------LTAVPY-----LAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC------CCSCCH-----HHHTTCTTCCEEECCSSCCCEECT
T ss_pred cCcccceeeCCCCccccccCcccc-cCccccEEECcCCc------ccccCH-----HHhcCccccCeeECCCCcCCccCh
Confidence 478888886654332211111111 23489999999765 443321 23467899999999873 443221
Q ss_pred HHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC-hhHHHHHh
Q 008051 457 EYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT-MDGCKLLA 535 (579)
Q Consensus 457 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~l~ 535 (579)
.....+++|+.|++++|.++..... .+.++++|++|++++|.++.. ....+..+++|+.|++++|+++ +-...++.
T Consensus 266 -~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 266 -SMLHELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp -TSCTTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSSCCSCC-CGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred -hhccccccCCEEECCCCccceECHH-HhcCcccCCEEECCCCcCcee-CHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 1225678999999999998653222 335689999999999988763 2345678899999999999953 43344443
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=3.7e-15 Score=149.16 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=30.4
Q ss_pred cccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHH-HHHHHHhcC----
Q 008051 440 TNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDA-ALLSGLDKC---- 513 (579)
Q Consensus 440 ~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~---- 513 (579)
++|+.|+++++ ++. +...+++|+.|++++|.++. +.. .+++|++|++++|.++.. .++..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~ 386 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 386 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC
T ss_pred CcCCEEECCCCcccc-----ccccCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcc
Confidence 35666666552 221 11224566666666666542 111 346666666666655441 012222222
Q ss_pred ---------CCCcEEEecccccCh
Q 008051 514 ---------ESMRSLWMSACNVTM 528 (579)
Q Consensus 514 ---------~~L~~L~l~~~~i~~ 528 (579)
++|+.|++++|+++.
T Consensus 387 ~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 387 HLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ------------------------
T ss_pred cccccccccCcCCEEECCCCcCCc
Confidence 678888888888654
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=3.1e-16 Score=165.75 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=74.8
Q ss_pred HHHHhhCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeec
Q 008051 67 EILTRRFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLS 146 (579)
Q Consensus 67 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~ 146 (579)
+..+..+++|++|+|+++.- ... .+. ....+++|++|+|+++.++......+ ..+++|++|+++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i-~~i--~~~------------~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls 132 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEI-QTI--EDG------------AYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAV 132 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCC-CEE--CTT------------TTTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECT
T ss_pred HHHHhCCCCCCEEECCCCcC-CCc--Chh------------HhcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECC
Confidence 34567889999999998732 111 111 12467889999999887665332233 367889999998
Q ss_pred CCCCCChHHHH-HHHhhCCCCCeEeccCCCcccccccccccccccCCccceeeccccc
Q 008051 147 SCDGFSTDGLA-AIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVN 203 (579)
Q Consensus 147 ~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~ 203 (579)
++ .++. ++ ..+.++++|++|++++|.++... +......+++|++|+++++.
T Consensus 133 ~N-~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 133 ET-NLAS--LENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TS-CCCC--STTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSC
T ss_pred CC-cCCC--CChhhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCcc
Confidence 87 4543 22 22457888999999888766543 12223356788888888663
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=1.2e-14 Score=149.91 Aligned_cols=265 Identities=17% Similarity=0.108 Sum_probs=153.5
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
.+++.|+++++.++.. .. ...++|++|+++++ .++. ++. .+++|++|++++|.++.. +..++
T Consensus 40 ~~l~~L~ls~n~L~~l--p~--~l~~~L~~L~L~~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~l--------p~~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL--PD--CLPAHITTLVIPDN-NLTS--LPA---LPPELRTLEVSGNQLTSL--------PVLPP 101 (622)
T ss_dssp HCCCEEECCSSCCSCC--CS--CCCTTCSEEEECSC-CCSC--CCC---CCTTCCEEEECSCCCSCC--------CCCCT
T ss_pred CCCcEEEecCCCcCcc--Ch--hhCCCCcEEEecCC-CCCC--CCC---cCCCCCEEEcCCCcCCcC--------CCCCC
Confidence 3578888887765521 10 01257888888877 4543 222 467788888877775432 22456
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcC
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKC 272 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~ 272 (579)
+|++|+++++. ++. ++ ..+++|+.|+++++. +
T Consensus 102 ~L~~L~Ls~N~--l~~--l~---~~l~~L~~L~L~~N~-l---------------------------------------- 133 (622)
T 3g06_A 102 GLLELSIFSNP--LTH--LP---ALPSGLCKLWIFGNQ-L---------------------------------------- 133 (622)
T ss_dssp TCCEEEECSCC--CCC--CC---CCCTTCCEEECCSSC-C----------------------------------------
T ss_pred CCCEEECcCCc--CCC--CC---CCCCCcCEEECCCCC-C----------------------------------------
Confidence 77777776653 111 10 134556666665553 0
Q ss_pred cccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEE
Q 008051 273 KNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELR 352 (579)
Q Consensus 273 ~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 352 (579)
..+....++|++|++++|.++.- -...++|+.|+++++.-.. +...+++|+.|+
T Consensus 134 -----------------~~lp~~l~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~L~~N~l~~----l~~~~~~L~~L~ 187 (622)
T 3g06_A 134 -----------------TSLPVLPPGLQELSVSDNQLASL-----PALPSELCKLWAYNNQLTS----LPMLPSGLQELS 187 (622)
T ss_dssp -----------------SCCCCCCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSC----CCCCCTTCCEEE
T ss_pred -----------------CcCCCCCCCCCEEECcCCcCCCc-----CCccCCCCEEECCCCCCCC----CcccCCCCcEEE
Confidence 00111247788888888775321 0134667777776541111 113456677777
Q ss_pred EecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHH
Q 008051 353 VFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAF 432 (579)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~ 432 (579)
++++. ++. .+ ...++|+.|.+.++. ++.++.
T Consensus 188 Ls~N~---------l~~---------l~---------------------~~~~~L~~L~L~~N~------l~~l~~---- 218 (622)
T 3g06_A 188 VSDNQ---------LAS---------LP---------------------TLPSELYKLWAYNNR------LTSLPA---- 218 (622)
T ss_dssp CCSSC---------CSC---------CC---------------------CCCTTCCEEECCSSC------CSSCCC----
T ss_pred CCCCC---------CCC---------CC---------------------CccchhhEEECcCCc------ccccCC----
Confidence 76331 211 00 123567777776543 332221
Q ss_pred HHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHh
Q 008051 433 GAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLD 511 (579)
Q Consensus 433 ~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 511 (579)
.+++|+.|+++++ ++. +...+++|+.|++++|.++.. .. .+++|+.|++++|.++. ++..+.
T Consensus 219 -----~~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~l--p~---~~~~L~~L~Ls~N~L~~--lp~~l~ 281 (622)
T 3g06_A 219 -----LPSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRNQLTR--LPESLI 281 (622)
T ss_dssp -----CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCCS--CCGGGG
T ss_pred -----CCCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCcC--Cc---ccccCcEEeCCCCCCCc--CCHHHh
Confidence 2467888888763 332 114567888888888887531 11 56889999999998873 556678
Q ss_pred cCCCCcEEEecccccChhHHHHHh
Q 008051 512 KCESMRSLWMSACNVTMDGCKLLA 535 (579)
Q Consensus 512 ~~~~L~~L~l~~~~i~~~~~~~l~ 535 (579)
++++|+.|++++|+++......+.
T Consensus 282 ~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 282 HLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp GSCTTCEEECCSCCCCHHHHHHHH
T ss_pred hccccCEEEecCCCCCCcCHHHHH
Confidence 888999999999988776555443
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.45 E-value=5.1e-15 Score=142.45 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=27.9
Q ss_pred CCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccc
Q 008051 114 SLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIED 178 (579)
Q Consensus 114 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 178 (579)
+++.++++++.++... ....++|+.|+++++ .++... ...+..+++|++|++++|.++.
T Consensus 32 ~l~~l~~~~~~l~~lp----~~~~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~ 90 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP----KDLPPDTALLDLQNN-KITEIK-DGDFKNLKNLHTLILINNKISK 90 (330)
T ss_dssp ETTEEECTTSCCCSCC----CSCCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred CCeEEEecCCCccccC----ccCCCCCeEEECCCC-cCCEeC-hhhhccCCCCCEEECCCCcCCe
Confidence 4666666655433210 001245666666665 333311 1122355666666666665543
No 54
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=126.36 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=82.1
Q ss_pred CcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHH----hcCcccceeeccc-ccChH
Q 008051 380 PRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVV----RTCTNLQRLSLSG-LLTDL 454 (579)
Q Consensus 380 ~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~L~~L~l~~-~~~~~ 454 (579)
++|+.|++..+.+++.++..+...+++|+.|+|+++. ++ +.+...+. ..+++|++|++++ .+++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~------l~----~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~ 170 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS------LG----PEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC------CC----HHHHHHHHHHHHSTTCCCCEEECCSSCCHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC------CC----HHHHHHHHHHHHhcCCccceeeCCCCCCChH
Confidence 3455554444455555555554445556666655432 33 33333222 1245566666665 35555
Q ss_pred HHHHHH---hcccCcCeeeccccCCChHHHHHHH---hCCCcCcEEEecCCCCCHHHHH---HHHhcCCCCcEEEecccc
Q 008051 455 TFEYIG---QYAKNLELLSVAFAGSSDWGMQCVL---RGCPKLRKFEIRDCPFGDAALL---SGLDKCESMRSLWMSACN 525 (579)
Q Consensus 455 ~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~ 525 (579)
+...+. ..+++|++|+|++|.+++.++..+. ..+++|++|++++|.+++.+.. ..+..+++|+.|+|++|.
T Consensus 171 ~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 544433 3456677777777777666654443 3356677777777777665432 334456677777777777
Q ss_pred cChhHHHHHhh
Q 008051 526 VTMDGCKLLAS 536 (579)
Q Consensus 526 i~~~~~~~l~~ 536 (579)
+++.|+..+..
T Consensus 251 i~~~g~~~L~~ 261 (372)
T 3un9_A 251 LSSEGRQVLRD 261 (372)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777766654
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.1e-14 Score=138.35 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=49.8
Q ss_pred cccCcCeeeccccCCChHHHHH---HHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 462 YAKNLELLSVAFAGSSDWGMQC---VLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
..+.++.+++.++.+++.++.. .+..+++|++|++++|.++.. ....+.++++|+.|++++|+++-
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc-CHHHHhcCCCCCEEEeeCCCccC
Confidence 4567888888888887665443 356789999999999988742 22335889999999999999653
No 56
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=5e-13 Score=111.91 Aligned_cols=104 Identities=13% Similarity=0.266 Sum_probs=90.8
Q ss_pred cccceeeccc-ccChHHHHHHHhcccCcCeeeccccC-CChHHHHHHHhC---CCcCcEEEecCC-CCCHHHHHHHHhcC
Q 008051 440 TNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAG-SSDWGMQCVLRG---CPKLRKFEIRDC-PFGDAALLSGLDKC 513 (579)
Q Consensus 440 ~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~---~~~L~~L~l~~~-~~~~~~~~~~l~~~ 513 (579)
.+|+.|++++ .++|.++..+ ..|++|+.|+|++|. ++|.++..+... +++|++|+|++| .++|.++. .+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcC
Confidence 4688999988 5888888887 589999999999996 999999999763 678999999999 69999885 55689
Q ss_pred CCCcEEEecccc-cChhH--HHHHhhcCCCceEEE
Q 008051 514 ESMRSLWMSACN-VTMDG--CKLLASKKPRLNVEV 545 (579)
Q Consensus 514 ~~L~~L~l~~~~-i~~~~--~~~l~~~~p~l~~~~ 545 (579)
++|+.|++++|+ +++.| ...+++.+|+++|+.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 999999999998 99987 688899999998864
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.37 E-value=1e-13 Score=138.66 Aligned_cols=178 Identities=12% Similarity=0.044 Sum_probs=102.3
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLA 374 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.+++|++|++++|.+..- -...++|+.|+++++.-. .+.. ...+++|+.|+++++. ++.
T Consensus 193 ~l~~L~~L~l~~N~l~~l-----~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~---------l~~----- 251 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKKL-----PDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL---------LKT----- 251 (454)
T ss_dssp TCTTCCEEECCSSCCSSC-----CCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC---------CSS-----
T ss_pred CCCCCCEEECCCCcCCcC-----CCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc---------CCc-----
Confidence 455666666666653320 011245666666553111 1111 2345666666666432 221
Q ss_pred HHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cCh
Q 008051 375 VSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTD 453 (579)
Q Consensus 375 l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~ 453 (579)
+....++|+.|.+..+.++. +....++|+.|+++++. ++..+ ...++|+.|+++++ ++.
T Consensus 252 l~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N~------l~~l~---------~~~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 252 LPDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSENI------FSGLS---------ELPPNLYYLNASSNEIRS 311 (454)
T ss_dssp CCSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC------CSEES---------CCCTTCCEEECCSSCCSE
T ss_pred ccccccccCEEECCCCcccc-----cCcccCcCCEEECcCCc------cCccc---------CcCCcCCEEECcCCcCCc
Confidence 00123556666555444432 11234688899888754 33211 01268999999873 332
Q ss_pred HHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 454 LTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 454 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
+....++|+.|++++|.++. +. ..+++|++|++++|.++. ++. .+++|+.|++++|+++.
T Consensus 312 -----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 312 -----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSS
T ss_pred -----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCc
Confidence 11122589999999998764 11 236899999999998874 333 47899999999999765
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.37 E-value=4.4e-15 Score=142.94 Aligned_cols=86 Identities=9% Similarity=-0.025 Sum_probs=42.2
Q ss_pred cCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhC-----CCcCcEEEecCCCCCHHH-HHHHH
Q 008051 438 TCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRG-----CPKLRKFEIRDCPFGDAA-LLSGL 510 (579)
Q Consensus 438 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~-~~~~l 510 (579)
.+++|+.|+++++ ++. +......+++|+.|++++|.++..+...+... .++|+.|++++|++.... ....+
T Consensus 239 ~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 4556666666552 221 11112345666677776666544322222111 355677777777655221 22445
Q ss_pred hcCCCCcEEEecccc
Q 008051 511 DKCESMRSLWMSACN 525 (579)
Q Consensus 511 ~~~~~L~~L~l~~~~ 525 (579)
..+++|+.+++++|.
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 666777777776663
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=133.94 Aligned_cols=283 Identities=14% Similarity=0.077 Sum_probs=158.5
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.|+.....+.+++.++.... ...++|++|+++++ .++... ...+..+++|++|++++|.++......+ ..
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~----~~~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~ 98 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS----GLTEAVKSLDLSNN-RITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSF----SS 98 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT----TCCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTT----TT
T ss_pred CCCCCeEeeCCCCCcccccc----cccccCcEEECCCC-cCcccC-HHHhccCCCCCEEECCCCccCccCHhhc----CC
Confidence 35555566666655443110 12358999999988 565421 1134578999999999988766443322 25
Q ss_pred CCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHHHHhhCCCCeeecccccccccChhhHHHHHHHHh
Q 008051 191 FTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFN 270 (579)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 270 (579)
+++|++|+++++. ++. .....+..+++|++|+++++. +. .
T Consensus 99 l~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~L~~n~-l~-------------~----------------------- 138 (353)
T 2z80_A 99 LGSLEHLDLSYNY--LSN-LSSSWFKPLSSLTFLNLLGNP-YK-------------T----------------------- 138 (353)
T ss_dssp CTTCCEEECCSSC--CSS-CCHHHHTTCTTCSEEECTTCC-CS-------------S-----------------------
T ss_pred CCCCCEEECCCCc--CCc-CCHhHhCCCccCCEEECCCCC-Cc-------------c-----------------------
Confidence 6788888888763 221 111224667788888887764 00 0
Q ss_pred cCcccccccCccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCc
Q 008051 271 KCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLE 349 (579)
Q Consensus 271 ~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 349 (579)
+.. ......+++|++|++++|. +.... ...+..+++|+.|+++++.-..........+++|+
T Consensus 139 -------------l~~---~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 139 -------------LGE---TSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp -------------SCS---SCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred -------------cCc---hhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 000 0112357788888888874 32211 01123455555555554311110011112344455
Q ss_pred eEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccc
Q 008051 350 ELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMD 429 (579)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~ 429 (579)
+|+++ .+.++... ......+++|+.|+++++. ++..+..
T Consensus 202 ~L~l~----------------------------------~n~l~~~~-~~~~~~~~~L~~L~L~~n~------l~~~~~~ 240 (353)
T 2z80_A 202 HLILH----------------------------------MKQHILLL-EIFVDVTSSVECLELRDTD------LDTFHFS 240 (353)
T ss_dssp EEEEE----------------------------------CSCSTTHH-HHHHHHTTTEEEEEEESCB------CTTCCCC
T ss_pred eecCC----------------------------------CCccccch-hhhhhhcccccEEECCCCc------ccccccc
Confidence 55554 33332222 2233457888888888765 3322211
Q ss_pred hHHHHHHhcCcccceeeccc-ccChHHHHHH---HhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHH
Q 008051 430 EAFGAVVRTCTNLQRLSLSG-LLTDLTFEYI---GQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDA 504 (579)
Q Consensus 430 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~---~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 504 (579)
.+ .....++.++.+++.+ .+++..+..+ ...+++|+.|++++|.++... ..++..+++|++|++++|++..+
T Consensus 241 -~l-~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 241 -EL-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred -cc-ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCccCc
Confidence 11 1123467788888877 4677665543 356899999999999986321 22236789999999999987643
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=8.6e-14 Score=133.85 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=72.5
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+.++.|+++++.++......+. .+++|++|+++++ .++... +..+..+++|++|++++|.++..... ..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~-------~~~ 121 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINN-KISKIS-PGAFAPLVKLERLYLSKNQLKELPEK-------MPK 121 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSCCSBCCSS-------CCT
T ss_pred CCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCC-cCCeeC-HHHhcCCCCCCEEECCCCcCCccChh-------hcc
Confidence 6899999999987754333333 7899999999988 554421 33445789999999999987644321 226
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. +.. .....+..+++|+.|+++++.
T Consensus 122 ~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 122 TLQELRVHENE--ITK-VRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp TCCEEECCSSC--CCB-BCHHHHTTCTTCCEEECCSSC
T ss_pred cccEEECCCCc--ccc-cCHhHhcCCccccEEECCCCc
Confidence 88999988763 221 112334677888888887765
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.35 E-value=1.5e-13 Score=141.76 Aligned_cols=260 Identities=18% Similarity=0.135 Sum_probs=165.9
Q ss_pred CCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCCh
Q 008051 74 PNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFST 153 (579)
Q Consensus 74 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 153 (579)
.+++.|+++++... . +|.. -.++|++|+++++.++. +...+++|++|+++++ .++.
T Consensus 40 ~~l~~L~ls~n~L~-~---lp~~--------------l~~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N-~l~~ 95 (622)
T 3g06_A 40 NGNAVLNVGESGLT-T---LPDC--------------LPAHITTLVIPDNNLTS-----LPALPPELRTLEVSGN-QLTS 95 (622)
T ss_dssp HCCCEEECCSSCCS-C---CCSC--------------CCTTCSEEEECSCCCSC-----CCCCCTTCCEEEECSC-CCSC
T ss_pred CCCcEEEecCCCcC-c---cChh--------------hCCCCcEEEecCCCCCC-----CCCcCCCCCEEEcCCC-cCCc
Confidence 46999999877432 2 2221 12789999999998764 2225789999999998 5553
Q ss_pred HHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChH
Q 008051 154 DGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLE 233 (579)
Q Consensus 154 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 233 (579)
++. .+++|++|++++|.++... ...++|+.|+++++. ++. ++ ..+++|++|+++++. +.
T Consensus 96 --lp~---~l~~L~~L~Ls~N~l~~l~--------~~l~~L~~L~L~~N~--l~~--lp---~~l~~L~~L~Ls~N~-l~ 154 (622)
T 3g06_A 96 --LPV---LPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQ--LTS--LP---VLPPGLQELSVSDNQ-LA 154 (622)
T ss_dssp --CCC---CCTTCCEEEECSCCCCCCC--------CCCTTCCEEECCSSC--CSC--CC---CCCTTCCEEECCSSC-CS
T ss_pred --CCC---CCCCCCEEECcCCcCCCCC--------CCCCCcCEEECCCCC--CCc--CC---CCCCCCCEEECcCCc-CC
Confidence 222 6899999999999866532 256799999999774 221 11 134778888887775 10
Q ss_pred HHHHHHhhCCCCeeecccccccccChhhHHHHHHHHhcCcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHH
Q 008051 234 QLQKLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSE 313 (579)
Q Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 313 (579)
.+....++|+.|++++|.++.-.
T Consensus 155 ---------------------------------------------------------~l~~~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 155 ---------------------------------------------------------SLPALPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp ---------------------------------------------------------CCCCCCTTCCEEECCSSCCSCCC
T ss_pred ---------------------------------------------------------CcCCccCCCCEEECCCCCCCCCc
Confidence 00113467899999988854411
Q ss_pred HHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCC
Q 008051 314 LVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMT 393 (579)
Q Consensus 314 l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~ 393 (579)
..+++|+.|+++++.-.. +....++|+.|+++++. ++. .+
T Consensus 178 -----~~~~~L~~L~Ls~N~l~~----l~~~~~~L~~L~L~~N~---------l~~---------l~------------- 217 (622)
T 3g06_A 178 -----MLPSGLQELSVSDNQLAS----LPTLPSELYKLWAYNNR---------LTS---------LP------------- 217 (622)
T ss_dssp -----CCCTTCCEEECCSSCCSC----CCCCCTTCCEEECCSSC---------CSS---------CC-------------
T ss_pred -----ccCCCCcEEECCCCCCCC----CCCccchhhEEECcCCc---------ccc---------cC-------------
Confidence 457899999998752211 22335789999998542 221 11
Q ss_pred HHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeecc
Q 008051 394 NAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVA 472 (579)
Q Consensus 394 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~ 472 (579)
..+++|+.|+++++. ++.++ ..+++|+.|+++++ ++. +...+++|+.|+++
T Consensus 218 --------~~~~~L~~L~Ls~N~------L~~lp---------~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls 269 (622)
T 3g06_A 218 --------ALPSGLKELIVSGNR------LTSLP---------VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVY 269 (622)
T ss_dssp --------CCCTTCCEEECCSSC------CSCCC---------CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECC
T ss_pred --------CCCCCCCEEEccCCc------cCcCC---------CCCCcCcEEECCCCCCCc-----CCcccccCcEEeCC
Confidence 013567777776543 33222 23467777777662 332 11145778888888
Q ss_pred ccCCChHHHHHHHhCCCcCcEEEecCCCCCHHH
Q 008051 473 FAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAA 505 (579)
Q Consensus 473 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 505 (579)
+|.++. +...+.++++|+.|++++|+++...
T Consensus 270 ~N~L~~--lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 270 RNQLTR--LPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SSCCCS--CCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCCCc--CCHHHhhccccCEEEecCCCCCCcC
Confidence 887752 2233456788888888888887653
No 62
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.7e-11 Score=118.72 Aligned_cols=194 Identities=16% Similarity=0.132 Sum_probs=113.1
Q ss_pred CCCCCeeeeccccCCcHHHHHHHHc----CCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhH
Q 008051 296 CANLTFLNLSYATLGSSELVKLLMH----CPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEA 370 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~~~~----~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 370 (579)
.+.|+.|++++|.++......+... +++|+.|+++++ +++.++..+...+++|+.|+++++. +++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~---------l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS---------LGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC---------CCHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC---------CCHH
Confidence 4678888888888776655443322 246666666653 5555555555445566666666332 4444
Q ss_pred HHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHH---HHHhcCcccceeec
Q 008051 371 GFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFG---AVVRTCTNLQRLSL 447 (579)
Q Consensus 371 ~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~L~~L~l 447 (579)
+...+... +...+++|+.|+|+++. ++ +.+.. ..+..+++|++|++
T Consensus 142 ~~~~L~~~---------------------L~~~~~~L~~L~Ls~n~------l~----~~~~~~l~~~L~~~~~L~~L~L 190 (372)
T 3un9_A 142 ACKDLRDL---------------------LLHDQCQITTLRLSNNP------LT----AAGVAVLMEGLAGNTSVTHLSL 190 (372)
T ss_dssp HHHHHHHH---------------------HHSTTCCCCEEECCSSC------CH----HHHHHHHHHHHHTCSSCCEEEC
T ss_pred HHHHHHHH---------------------HHhcCCccceeeCCCCC------CC----hHHHHHHHHHHhcCCCcCEEeC
Confidence 43333210 11134567777776543 33 33332 23345677778887
Q ss_pred cc-ccChHHHHHHH---hcccCcCeeeccccCCChHHHHHHHh---CCCcCcEEEecCCCCCHHHHHHHHhc--CC--CC
Q 008051 448 SG-LLTDLTFEYIG---QYAKNLELLSVAFAGSSDWGMQCVLR---GCPKLRKFEIRDCPFGDAALLSGLDK--CE--SM 516 (579)
Q Consensus 448 ~~-~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~--~~--~L 516 (579)
++ .+++.+...+. ..+++|+.|++++|.+++.+...+.. .+++|++|++++|.+++.+...+..- .. .|
T Consensus 191 s~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L 270 (372)
T 3un9_A 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGA 270 (372)
T ss_dssp TTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------C
T ss_pred CCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccc
Confidence 77 46666655443 34578899999999888877665544 46889999999998888766443321 11 16
Q ss_pred cEEE--ecccccChh
Q 008051 517 RSLW--MSACNVTMD 529 (579)
Q Consensus 517 ~~L~--l~~~~i~~~ 529 (579)
+.+. +.++.++.+
T Consensus 271 ~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 271 RVVVSLTEGTAVSEY 285 (372)
T ss_dssp EEECCCC----CHHH
T ss_pred hhhHhhhcCCccCHH
Confidence 6666 666666554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.34 E-value=1.9e-14 Score=137.28 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=27.3
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecc
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSA 523 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 523 (579)
.+++|+.|++++|.++. +...+..+++|+.|++++|++....+...+..+++|+.|++.+
T Consensus 212 ~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 34455555555555432 1111233455555555555555333444444445454444443
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.26 E-value=1.4e-13 Score=132.44 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+++++|+++++.++......+. .+++|++|+++++ .++... +..+..+++|++|++++|.++..... ..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~-------~~~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNN-KISKIH-EKAFSPLRKLQKLYISKNHLVEIPPN-------LPS 123 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEEC-GGGSTTCTTCCEEECCSSCCCSCCSS-------CCT
T ss_pred CCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCC-ccCccC-HhHhhCcCCCCEEECCCCcCCccCcc-------ccc
Confidence 5677788877765543222232 6677778887776 444321 22334677778888777765533211 125
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. +..- ....+..+++|++|+++++.
T Consensus 124 ~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 124 SLVELRIHDNR--IRKV-PKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp TCCEEECCSSC--CCCC-CSGGGSSCSSCCEEECCSCC
T ss_pred cCCEEECCCCc--cCcc-CHhHhCCCccCCEEECCCCc
Confidence 67777777653 2210 01123456667777766654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.24 E-value=1.2e-13 Score=131.73 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=61.9
Q ss_pred HHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccc
Q 008051 105 LVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWL 184 (579)
Q Consensus 105 l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l 184 (579)
+..+...+++|++|+++++.++......+. .+++|++|+++++ .++.. .. +..+++|++|++++|.++...
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~--~~-~~~l~~L~~L~Ls~n~l~~l~---- 96 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSN-VLYET--LD-LESLSTLRTLDLNNNYVQELL---- 96 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTS-CCEEE--EE-ETTCTTCCEEECCSSEEEEEE----
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCC-cCCcc--hh-hhhcCCCCEEECcCCcccccc----
Confidence 444555666777777777776654334443 6677777777776 34321 11 446777777777777654322
Q ss_pred ccccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 185 SCFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 185 ~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
..++|++|+++++. ++... ...+++|++|+++++.
T Consensus 97 -----~~~~L~~L~l~~n~--l~~~~----~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 97 -----VGPSIETLHAANNN--ISRVS----CSRGQGKKNIYLANNK 131 (317)
T ss_dssp -----ECTTCCEEECCSSC--CSEEE----ECCCSSCEEEECCSSC
T ss_pred -----CCCCcCEEECCCCc--cCCcC----ccccCCCCEEECCCCC
Confidence 23677777777653 22111 1235667777776664
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=1.6e-13 Score=138.66 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=29.5
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEe
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWM 521 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 521 (579)
.+++|+.|++++|.++. +...+..+++|+.|++++|++....++..+..++.|+.+++
T Consensus 212 ~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 34555555555555442 11122345566666666666654445555555555554444
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.24 E-value=3.2e-12 Score=121.11 Aligned_cols=191 Identities=18% Similarity=0.144 Sum_probs=130.7
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFL 373 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 373 (579)
.+++|++|+++++.+..-. -+..+++|+.|+++++ +.+.. . ...+++|+.|+++++. +++..
T Consensus 39 ~l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~---------l~~~~-- 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP---------LKNVS-- 101 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC---------CSCCG--
T ss_pred HcCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc---------CCCch--
Confidence 3567888888877744321 2456788888888764 22211 1 3557788888888553 33221
Q ss_pred HHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cC
Q 008051 374 AVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LT 452 (579)
Q Consensus 374 ~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 452 (579)
....+++|+.|.+..+.+++.. . ...+++|+.|+++++. ++..+. +..+++|+.|+++++ ++
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~------l~~~~~-------l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ------ITNISP-------LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC------CCCCGG-------GGGCTTCCEEECCSSCCC
T ss_pred -hhcCCCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc------cCcCcc-------ccCCCCccEEEccCCcCC
Confidence 1334777888876666665422 2 3478899999998764 443221 456899999999883 44
Q ss_pred hHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 453 DLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
+... ...+++|+.|++++|.+++... +..+++|++|++++|.+++.. .+..+++|+.|++++|+++.
T Consensus 165 ~~~~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP---LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG---GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred CChh---hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 4222 4678999999999999865332 467899999999999887653 37889999999999999755
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.24 E-value=2.4e-12 Score=129.46 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=34.0
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
.+++|+.|++++|.++.... ..+.++++|++|++++|.++.. ....+..+++|+.|++++|+
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCC-CTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCcc-ChHHhccccCCCEEEccCCC
Confidence 45566666666665543211 1124456666666666665532 22344556666666666666
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.23 E-value=9.8e-14 Score=132.81 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=53.8
Q ss_pred cCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCC
Q 008051 438 TCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESM 516 (579)
Q Consensus 438 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 516 (579)
.+++|+.|+++++ ++. +......+++|+.|++++|.+... +...+.++++|++|++++|++... ++..+.++++|
T Consensus 204 ~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L 279 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279 (328)
T ss_dssp GCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCB-CCTTGGGCTTC
T ss_pred CCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhh-cchhhhcCCCC
Confidence 4556666666552 221 111123456666666666654321 112234466677777776655443 33445666677
Q ss_pred cEEEecccccChhHHHHHhhcCCCceEEEecc
Q 008051 517 RSLWMSACNVTMDGCKLLASKKPRLNVEVIKE 548 (579)
Q Consensus 517 ~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~ 548 (579)
+.|++++|++...-...+ ..++++++..++.
T Consensus 280 ~~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLI-AQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCCCCGGG-GGSCTTCEEECCG
T ss_pred CEEeCCCCCchhhccHHH-hhccCceEEeCCH
Confidence 777777766433222222 3455555555553
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=116.55 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=97.3
Q ss_pred cCCCCCeeeeccccCCcHHH---HHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchh-H
Q 008051 295 VCANLTFLNLSYATLGSSEL---VKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTE-A 370 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~ 370 (579)
.+++|++|++++|.+..... ...+..+++|+.|+++++.-..........+++|+.|+++++. +.. .
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~ 185 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP---------GLGER 185 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT---------TCHHH
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC---------Cccch
Confidence 56778888888887553110 1112357777777776542211111122456777788777442 222 1
Q ss_pred HHHHH--HcCCCcchhhhhcCcCCC--HHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceee
Q 008051 371 GFLAV--SHGCPRLQYVLYFCQAMT--NAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLS 446 (579)
Q Consensus 371 ~~~~l--~~~~~~L~~L~~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~ 446 (579)
++... ...+++|++|.+..+.++ ......+...+++|+.|+++++.
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~------------------------------ 235 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS------------------------------ 235 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC------------------------------
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC------------------------------
Confidence 11110 123444444444444443 11122222344455555544332
Q ss_pred cccccChHHHHHHH--hcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccc
Q 008051 447 LSGLLTDLTFEYIG--QYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSAC 524 (579)
Q Consensus 447 l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 524 (579)
+++.....+. ..+++|+.|++++|.++. +.. .-.++|++|++++|.++.. ..+..+++|+.|++++|
T Consensus 236 ----l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 236 ----LRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNRA---PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp ----CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCSC---CCTTSCCCCSCEECSST
T ss_pred ----CCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCCC---chhhhCCCccEEECcCC
Confidence 2211000000 112678888888887752 111 1147899999999988753 22577889999999999
Q ss_pred ccChhH
Q 008051 525 NVTMDG 530 (579)
Q Consensus 525 ~i~~~~ 530 (579)
+++++|
T Consensus 305 ~l~~~g 310 (310)
T 4glp_A 305 PFLVPG 310 (310)
T ss_dssp TTSCCC
T ss_pred CCCCCC
Confidence 988754
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.20 E-value=9.2e-14 Score=132.12 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=37.0
Q ss_pred cCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCC-CcCcEEEecCCCCC
Q 008051 438 TCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGC-PKLRKFEIRDCPFG 502 (579)
Q Consensus 438 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~~ 502 (579)
.+++|+.|+++++ +++.... ....+++|+.|++++|.++......+ ..+ ++|++|++++|+++
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCEE
T ss_pred CCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCee
Confidence 4566666666552 2221111 12456788888888888754322222 334 48999999998764
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=4.1e-13 Score=126.15 Aligned_cols=206 Identities=16% Similarity=0.107 Sum_probs=131.9
Q ss_pred CCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHH
Q 008051 296 CANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLA 374 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.++|++|+++++.++.... ..+..+++|+.|+++++ +.... ......+++|+.|+++++..... +...
T Consensus 31 ~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~-----~~~~---- 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRS-----VDPA---- 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCC-----CCTT----
T ss_pred CCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccc-----cCHH----
Confidence 4678888888887544221 12356788888888764 22211 11224578888888886531111 1111
Q ss_pred HHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cCh
Q 008051 375 VSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTD 453 (579)
Q Consensus 375 l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~ 453 (579)
....+++|++|.+..+.++...... ...+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++.
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~------l~~~~~-----~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNA------LQALPD-----DTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSC------CCCCCT-----TTTTTCTTCCEEECCSSCCCE
T ss_pred HhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCc------ccccCH-----hHhccCCCccEEECCCCcccc
Confidence 1234678888876666555322222 2368899999998765 332221 12346789999999873 443
Q ss_pred HHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 454 LTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 454 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
... .....+++|+.|++++|.+++... ..+..+++|++|++++|.+++. ....+..+++|+.|++++|+++
T Consensus 168 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPE-RAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECT-TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEE
T ss_pred cCH-HHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCcc
Confidence 211 123457899999999999865322 2335689999999999988764 3466788999999999999953
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=2e-13 Score=129.99 Aligned_cols=209 Identities=16% Similarity=0.106 Sum_probs=109.4
Q ss_pred CCCCCeeeeccccCCcHHHHHH-HHcCCcCcEEeccCc-cCh--HHHHHHhc-cCCCCceEEEecCCCCcchhcccchhH
Q 008051 296 CANLTFLNLSYATLGSSELVKL-LMHCPLLKRLWVLDT-VED--RGLEAVGS-SCPLLEELRVFPADPFDEEITYGVTEA 370 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~l~~~-~~~--~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~ 370 (579)
+++|++|++++|.++......+ ...+++|+.|+++++ +.. ..+..+.. ..++|++|+++++. ++..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~---------l~~~ 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH---------SLNF 164 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS---------CCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC---------Cccc
Confidence 4566666666665432111111 134556666666543 111 11211111 12566666666442 2111
Q ss_pred HHHHHHcCCCcchhhhhcCcCCCHH-H-HHHH-HHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeec
Q 008051 371 GFLAVSHGCPRLQYVLYFCQAMTNA-A-VATI-VRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSL 447 (579)
Q Consensus 371 ~~~~l~~~~~~L~~L~~~~~~~~~~-~-l~~l-~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l 447 (579)
... ....+++|++|.++.+.+... . ...+ ...+++|+.|+++++. ++.. ......+...+++|+.|++
T Consensus 165 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~------l~~~--~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 165 SCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG------METP--SGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp CTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC------CCCH--HHHHHHHHHTTCCCSEEEC
T ss_pred hHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc------Ccch--HHHHHHHHhcCCCCCEEEC
Confidence 100 112355666665555554432 1 1122 1456777888877654 3311 0112234456677888888
Q ss_pred ccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 448 SGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 448 ~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
+++ +++.........+++|+.|++++|.++. +...+ .++|++|++++|.+++. +. +..+++|+.|++++|++
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTT
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCC
Confidence 762 3332111112235788888888888762 11111 26889999999988764 23 67788899999999887
Q ss_pred Chh
Q 008051 527 TMD 529 (579)
Q Consensus 527 ~~~ 529 (579)
++.
T Consensus 309 ~~~ 311 (312)
T 1wwl_A 309 LDS 311 (312)
T ss_dssp TCC
T ss_pred CCC
Confidence 754
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.19 E-value=2.5e-12 Score=122.98 Aligned_cols=154 Identities=20% Similarity=0.259 Sum_probs=95.8
Q ss_pred hCCCceEEEcCCCCccccCCCCCCCCCCCchHHHHHHHhcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCC
Q 008051 72 RFPNILSVTLKGKPRFSDFNLVPQDWGADIHPWLVAFADRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGF 151 (579)
Q Consensus 72 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 151 (579)
..++++.|+++++... . +|.. ...+++|++|+++++.++. +......+++|++|+++++ .+
T Consensus 79 ~~~~l~~L~L~~n~l~-~---lp~~------------l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n-~l 139 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-Q---FPDQ------------AFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARN-PL 139 (328)
T ss_dssp TSTTCCEEEEESSCCS-S---CCSC------------GGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESC-CC
T ss_pred cccceeEEEccCCCch-h---cChh------------hhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCC-cc
Confidence 4578999999876432 1 1211 1247899999999988762 2222247789999999988 55
Q ss_pred ChHHHHHHHhhCCCCCeEeccCCCcccccccccc-----cccccCCccceeecccccCCCCHHHHHHHHHhCCCCCeeEe
Q 008051 152 STDGLAAIATNCKNLTELDIQENGIEDISGSWLS-----CFPESFTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKV 226 (579)
Q Consensus 152 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-----~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 226 (579)
+. ++..+..+++|++|++++|.+.......+. .....+++|++|+++++. ++ .++..+..+++|++|++
T Consensus 140 ~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~--~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 140 RA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IR--SLPASIANLQNLKSLKI 213 (328)
T ss_dssp CC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CC--CCCGGGGGCTTCCEEEE
T ss_pred cc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cC--cchHhhcCCCCCCEEEc
Confidence 52 455566889999999998754332222111 112247788888888774 33 33334577888888888
Q ss_pred cCccChHHHHHHHhhCCCCeeeccc
Q 008051 227 NKSISLEQLQKLLVLAPQLVDLGTG 251 (579)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~L~~L~l~ 251 (579)
+++. +..++..+..+++|+.|++.
T Consensus 214 ~~N~-l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 214 RNSP-LSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ESSC-CCCCCGGGGGCTTCCEEECT
T ss_pred cCCC-CCcCchhhccCCCCCEEECc
Confidence 8875 22222234445555555443
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=1.9e-13 Score=129.98 Aligned_cols=109 Identities=22% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHH-HHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDG-LAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
++|++|+++++.++......+ ..+++|++|+++++ .++..+ .......+++|++|++++|.+..... ....+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~-----~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE-----EEETC
T ss_pred CCCCEEECCCCccCccCHhHh-hccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChh-----hcCCC
Confidence 577888888777654222222 36778888888877 454211 01122257888888888887654321 12256
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
++|++|+++++. +........+..+++|++|+++++.
T Consensus 101 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 101 EQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp TTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCc
Confidence 778888877653 1111111123566777777777664
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.15 E-value=1.3e-13 Score=131.23 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=45.7
Q ss_pred CCCeeeecCcccCh--HHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 114 SLEELRLKRMSVSD--ESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 114 ~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
++++|+++++.++. .....+. .+++|++|+++++..+... ++..+..+++|++|++++|.++...... ...+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGG----GGGC
T ss_pred eEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHH----HhCC
Confidence 45555555554442 1112222 4555666665531122111 1222335566666666555544222111 1234
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
++|++|+++++. +.. .++..+..+++|++|+++++.
T Consensus 125 ~~L~~L~Ls~N~--l~~-~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 125 KTLVTLDFSYNA--LSG-TLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp TTCCEEECCSSE--EES-CCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCEEeCCCCc--cCC-cCChHHhcCCCCCeEECcCCc
Confidence 455555555442 110 011123455566666665554
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.13 E-value=9.7e-13 Score=131.78 Aligned_cols=204 Identities=13% Similarity=0.039 Sum_probs=117.3
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLA 374 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.+++|++|++++|.+..... ..+..+++|+.|+++++.-..........+++|+.|+++++. ++.... .
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---------i~~~~~-~ 154 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP---------IESIPS-Y 154 (440)
T ss_dssp SCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC---------CCEECT-T
T ss_pred CCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc---------ccccCH-H
Confidence 55667777777666432211 123456677777776531111111112445667777776442 221110 0
Q ss_pred HHcCCCcchhhhhcC-cCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cC
Q 008051 375 VSHGCPRLQYVLYFC-QAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LT 452 (579)
Q Consensus 375 l~~~~~~L~~L~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 452 (579)
....+++|+.|.+.. +.+..... .....+++|+.|+++++. ++.++. +..+++|+.|+++++ ++
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~------l~~~~~-------~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCN------LREIPN-------LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSC------CSSCCC-------CTTCSSCCEEECTTSCCC
T ss_pred HhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCc------Cccccc-------cCCCcccCEEECCCCccC
Confidence 122356666664433 22211111 112367888899888765 333321 245788999999873 33
Q ss_pred hHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 453 DLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
.... .....+++|+.|++++|.++.... ..+.++++|++|+|++|.++.. ....+..+++|+.|++++|++
T Consensus 221 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 221 AIRP-GSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECT-TTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCC-CTTTTSSCTTCCEEECCSSCE
T ss_pred ccCh-hhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCcc-ChhHhccccCCCEEEcCCCCc
Confidence 3211 223567899999999998765322 2235688999999999988753 335567889999999999984
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=2.3e-12 Score=130.22 Aligned_cols=209 Identities=12% Similarity=0.088 Sum_probs=137.7
Q ss_pred hcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHH
Q 008051 294 PVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFL 373 (579)
Q Consensus 294 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 373 (579)
..+++|++|++++|.++...- +..+++|+.|+++++.-.. + ...++|+.|+++++. ++...
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~----l-~~~~~L~~L~L~~N~---------l~~~~-- 115 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE----L-LVGPSIETLHAANNN---------ISRVS-- 115 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE----E-EECTTCCEEECCSSC---------CCCEE--
T ss_pred hCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC----C-CCCCCcCEEECcCCc---------CCCCC--
Confidence 467888888888887543211 5577888888888652111 1 124788888888653 32211
Q ss_pred HHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cC
Q 008051 374 AVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LT 452 (579)
Q Consensus 374 ~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 452 (579)
...+++|+.|.+..+.++......+ ..+++|+.|+++++. ++..+. ..+...+++|+.|+++++ ++
T Consensus 116 --~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~------l~~~~~----~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 116 --CSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE------IDTVNF----AELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp --ECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSC------CCEEEG----GGGGGGTTTCCEEECTTSCCC
T ss_pred --ccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCC------CCCcCh----HHHhhhCCcccEEecCCCccc
Confidence 1236788888777777665332223 357899999998754 442211 122335789999999883 44
Q ss_pred hHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHH
Q 008051 453 DLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCK 532 (579)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 532 (579)
.. .. ...+++|+.|++++|.++... ..+..+++|+.|++++|.++. ++..+..+++|+.|++++|+++-..+.
T Consensus 183 ~~--~~-~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 183 DV--KG-QVVFAKLKTLDLSSNKLAFMG--PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EE--EC-CCCCTTCCEEECCSSCCCEEC--GGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cc--cc-cccCCCCCEEECCCCCCCCCC--HhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 32 11 124789999999999986422 124568999999999999885 555677889999999999998854544
Q ss_pred HHhhcCCCc
Q 008051 533 LLASKKPRL 541 (579)
Q Consensus 533 ~l~~~~p~l 541 (579)
.+...+|.+
T Consensus 256 ~~~~~l~~L 264 (487)
T 3oja_A 256 DFFSKNQRV 264 (487)
T ss_dssp HHHTTCHHH
T ss_pred HHHHhCCCC
Confidence 444444444
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.12 E-value=2.9e-12 Score=128.28 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=71.5
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++++.|+|+++.++......+. .+++|++|+++++ .++... ...+..+++|++|++++|.++......+ ..++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRN-HIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAF----VYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSS-CCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTS----CSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCC-cCCccC-hhhccCCccCCEEECCCCcCCeeCHhHh----hccc
Confidence 5677777777765543333333 6677777777776 444321 1233467777777777776655433222 2456
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHH-HHhhCCCCeeecccc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQK-LLVLAPQLVDLGTGS 252 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~~~~L~~L~l~~ 252 (579)
+|++|+++++. +..- ....+..+++|++|++.++.....+.. .+..+++|+.|++..
T Consensus 137 ~L~~L~L~~N~--i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 137 KLKELWLRNNP--IESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SCCEEECCSCC--CCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred cCceeeCCCCc--cccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 77777777653 2210 011235667777777776542222221 344556666665543
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.12 E-value=3.6e-12 Score=128.09 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+++++|+|+++.++......+. .+++|++|+++++ .++... ...+..+++|++|++++|.++......+ ..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRN-SIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAF----EYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTTS----SSCT
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCC-ccCCcC-hhhccCcccCCEEECCCCcCCccChhhh----cccC
Confidence 5788888888876654333333 6788888888887 454321 1234468888888888887765443322 2567
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHHH-HHhhCCCCeeecccc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQK-LLVLAPQLVDLGTGS 252 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~-~~~~~~~L~~L~l~~ 252 (579)
+|++|+++++. +.. .....+..+++|+.|+++++..+..+.. .+..+++|+.|++..
T Consensus 148 ~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 148 KLRELWLRNNP--IES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp TCCEEECCSCC--CCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCEEECCCCC--cce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 88888888764 221 0112245778888888887543332222 345566666666653
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.11 E-value=3.6e-13 Score=128.13 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=98.8
Q ss_pred cCCcCcEEeccCc-cChHHHHHH-hccCCCCceEEEecCCCCcchhcccchhH--HHHHHHc-CCCcchhhhhcCcCCCH
Q 008051 320 HCPLLKRLWVLDT-VEDRGLEAV-GSSCPLLEELRVFPADPFDEEITYGVTEA--GFLAVSH-GCPRLQYVLYFCQAMTN 394 (579)
Q Consensus 320 ~~~~L~~L~l~~~-~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~L~~L~~~~~~~~~ 394 (579)
.+++|+.|+++++ +.......+ ...+++|+.|+++++. ++.. .+..+.. .+++|++|.+..+.++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS---------WATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB---------CSSSSSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC---------CcchhHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 5778888888764 222111111 1456778888887542 3221 1222211 12566666555555443
Q ss_pred HHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHH--hcCcccceeeccc-ccCh--HHHHHHHhcccCcCee
Q 008051 395 AAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVV--RTCTNLQRLSLSG-LLTD--LTFEYIGQYAKNLELL 469 (579)
Q Consensus 395 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~L~~L~l~~-~~~~--~~~~~~~~~~~~L~~L 469 (579)
.....+. .+++|+.|+++++. +.. ..++.... ..+++|+.|++++ .++. .....+...+++|+.|
T Consensus 164 ~~~~~~~-~l~~L~~L~Ls~N~------l~~---~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 164 FSCEQVR-VFPALSTLDLSDNP------ELG---ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp CCTTTCC-CCSSCCEEECCSCT------TCH---HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred chHHHhc-cCCCCCEEECCCCC------cCc---chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 2222222 45666666666543 110 11111111 4456666666665 2332 1122333455666666
Q ss_pred eccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccc
Q 008051 470 SVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEA 549 (579)
Q Consensus 470 ~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~ 549 (579)
++++|.+++......+..+++|++|++++|.++. ++..+. ++|+.|++++|+++... . ...+|+++.-.+.++
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSSCCCSCC--C-TTTSCEEEEEECTTC
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhhcc--CCceEEECCCCCCCCCh--h-HhhCCCCCEEeccCC
Confidence 6666665442211122334666666666666652 222222 56666666666655431 1 234555555555544
Q ss_pred c
Q 008051 550 E 550 (579)
Q Consensus 550 ~ 550 (579)
+
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 3
No 82
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.10 E-value=1.7e-13 Score=130.31 Aligned_cols=206 Identities=16% Similarity=0.063 Sum_probs=113.9
Q ss_pred hcCCCCCeeeecc-ccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHH
Q 008051 294 PVCANLTFLNLSY-ATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGF 372 (579)
Q Consensus 294 ~~~~~L~~L~l~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 372 (579)
..+++|++|++++ +.+.... ...+..+++|+.|+++++.-...+......+++|+.|+++++. ++....
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~---------l~~~~p 142 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA---------LSGTLP 142 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE---------EESCCC
T ss_pred hCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc---------cCCcCC
Confidence 3566677777764 4432111 1123456677777776532111111122446677777776442 221100
Q ss_pred HHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCC-CCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-
Q 008051 373 LAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCP-NFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL- 450 (579)
Q Consensus 373 ~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~- 450 (579)
.....+++|++|.+..+.++......+. .++ +|+.|+++++. ++... . ..+..++ |+.|+++++
T Consensus 143 -~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~------l~~~~-~----~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 143 -PSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR------LTGKI-P----PTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp -GGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE------EEEEC-C----GGGGGCC-CSEEECCSSE
T ss_pred -hHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe------eeccC-C----hHHhCCc-ccEEECcCCc
Confidence 1122366677666655555432222233 344 78888887653 22111 0 1122344 888888773
Q ss_pred cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 451 LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 451 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
++.. .......+++|+.|++++|.++... .. +..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus 209 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEEC-CGGGCCTTSCCSEEECCSSEECCBG-GG-CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCc-CCHHHhcCCCCCEEECCCCceeeec-Cc-ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCccc
Confidence 3321 1222345788899999888865311 11 35578899999999988654 4566778889999999998865
No 83
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=8.1e-10 Score=105.93 Aligned_cols=168 Identities=18% Similarity=0.215 Sum_probs=105.9
Q ss_pred HHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHH-hCCCCceEEeeccC
Q 008051 338 LEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVR-NCPNFTCFRLCIMN 416 (579)
Q Consensus 338 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~ 416 (579)
+..+...+|+|+.|.+.++.. +.-.. . .+++|++|.+.+..+++..+..+.. .+|+|+.|+|+...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~--------l~l~~----~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~ 230 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN--------LSIGK----K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT--------CBCCS----C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBC
T ss_pred HHHHHhcCCCCcEEEEeCCCC--------ceecc----c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccc
Confidence 344555677888888875410 11000 0 1566676666566666666666653 57777777775311
Q ss_pred CCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHh--CCCcCcEE
Q 008051 417 PGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLR--GCPKLRKF 494 (579)
Q Consensus 417 ~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~L~~L 494 (579)
. .... +.++ ..|..+ + . ...+|+|+.|++.+|.+++.+...+.. .+++|++|
T Consensus 231 ~----~~~~---~~~~-------~~l~~~-l----~-------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 231 E----DYGF---DGDM-------NVFRPL-F----S-------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp G----GGTC---CSCG-------GGTGGG-S----C-------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred c----cccc---chhH-------HHHHHH-H----h-------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 0 0000 0000 000000 0 0 124789999999999988777666655 37899999
Q ss_pred EecCCCCCHHHHHHH---HhcCCCCcEEEecccccChhHHHHHhhcCCCceEEE
Q 008051 495 EIRDCPFGDAALLSG---LDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEV 545 (579)
Q Consensus 495 ~l~~~~~~~~~~~~~---l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~ 545 (579)
+|+.|.+++.+...+ ++++++|+.|++++|.+++++++.+.+.+ .+++..
T Consensus 285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~ 337 (362)
T 2ra8_A 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDV 337 (362)
T ss_dssp ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEEC
T ss_pred ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEe
Confidence 999999998765444 36689999999999999999999998866 444433
No 84
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.06 E-value=2.6e-09 Score=92.36 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHH---HhcCcccceeeccc-ccChHHHHHHHh---cccCcCe
Q 008051 396 AVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAV---VRTCTNLQRLSLSG-LLTDLTFEYIGQ---YAKNLEL 468 (579)
Q Consensus 396 ~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~---~~~~L~~ 468 (579)
.+..+...+++|+.|+|+++. .+. +.++..+ +...++|++|++++ .+++.+...++. ..++|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~-----~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIM-----NIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCT-----TCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHhcCCCCCEEEecCCC-----CCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCE
Confidence 344455567788888887641 255 5554443 34567899999988 588887766544 4578999
Q ss_pred eeccccCCChHHHHHHHhC---CCcCcEEEe--cCCCCCHHHH---HHHHhcCCCCcEEEecccccChhH
Q 008051 469 LSVAFAGSSDWGMQCVLRG---CPKLRKFEI--RDCPFGDAAL---LSGLDKCESMRSLWMSACNVTMDG 530 (579)
Q Consensus 469 L~l~~~~i~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~ 530 (579)
|+|++|.+++.+...++.. +++|++|++ ++|.+++.+. .+.+..+++|+.|++++|.++..|
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 9999999999998877655 678999999 8899998774 455677899999999999998877
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.06 E-value=1e-11 Score=117.92 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=128.8
Q ss_pred CCCCeeeeccccCCcHHHHHHHH--cCCcCcEEeccCc-cChHHHHHHh-ccCCCCceEEEecCCCCcchhcccchh---
Q 008051 297 ANLTFLNLSYATLGSSELVKLLM--HCPLLKRLWVLDT-VEDRGLEAVG-SSCPLLEELRVFPADPFDEEITYGVTE--- 369 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~l~~~~~--~~~~L~~L~l~~~-~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 369 (579)
..++.+.+..+.+++..+..+.. .+++|+.|+++++ +.......+. ..+++|+.|+++++. ++.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---------i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS---------WATGRS 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC---------CSSTTS
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc---------ccchhh
Confidence 34677777777766655544332 3456777777654 2221111111 446778888887543 322
Q ss_pred -HHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHH--HHhcCcccceee
Q 008051 370 -AGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGA--VVRTCTNLQRLS 446 (579)
Q Consensus 370 -~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~L~~L~ 446 (579)
.....+. .+++|++|.+..+.++......+ ..+++|+.|+++++. +.. +.++.. ....+++|+.|+
T Consensus 135 ~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~------l~~---~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 135 WLAELQQW-LKPGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNP------GLG---ERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp SHHHHHTT-BCSCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCT------TCH---HHHHHTTSCTTSSCCCCSCB
T ss_pred hhHHHHhh-hccCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCC------Ccc---chhhhHHHhhhcCCCCCEEE
Confidence 1111222 46777777666555533222222 257788888887654 220 111211 123578888888
Q ss_pred cccc-cCh--HHHHHHHhcccCcCeeeccccCCChHHHHHHHhC---CCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEE
Q 008051 447 LSGL-LTD--LTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRG---CPKLRKFEIRDCPFGDAALLSGLDKCESMRSLW 520 (579)
Q Consensus 447 l~~~-~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 520 (579)
++++ ++. .....+...+++|++|++++|.+++.....+ .. +++|++|++++|.++. ++..+ .++|+.|+
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~ 278 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLD 278 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEE
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEE
Confidence 8873 442 1222244567889999999888765321111 22 3689999999998773 33333 37899999
Q ss_pred ecccccChhHHHHHhhcCCCceEEEecccc
Q 008051 521 MSACNVTMDGCKLLASKKPRLNVEVIKEAE 550 (579)
Q Consensus 521 l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~ 550 (579)
+++|+++.-.. ...+|+++.-.+.+++
T Consensus 279 Ls~N~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 279 LSSNRLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCCcCCCCch---hhhCCCccEEECcCCC
Confidence 99998765211 2456777766666664
No 86
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.06 E-value=1.7e-11 Score=114.94 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=50.0
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCC-cccccccccccccccC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENG-IEDISGSWLSCFPESF 191 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~~~ 191 (579)
++|++|+++++.++......+. .+++|++|+++++ .++... +..+..+++|++|++++|. ++......+ ..+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~----~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATF----HGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTT----TTC
T ss_pred CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHh----cCC
Confidence 4566666666554442222222 4556666666655 333211 1222345666666666654 443322222 234
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
++|++|+++++. ++.. .+..+..+++|++|+++++.
T Consensus 105 ~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 105 GRLHTLHLDRCG--LQEL-GPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp TTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCc--CCEE-CHhHhhCCcCCCEEECCCCc
Confidence 556666665542 1110 01123445566666665553
No 87
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2e-10 Score=110.21 Aligned_cols=140 Identities=20% Similarity=0.156 Sum_probs=96.1
Q ss_pred HHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHh-cccCcCeeecccc--
Q 008051 399 TIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQ-YAKNLELLSVAFA-- 474 (579)
Q Consensus 399 ~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~-~~~~L~~L~l~~~-- 474 (579)
.+...+|+|+.|.++++.. +. .+ . + ..++|+.|++.. .+++..+..+.. .+|+|+.|+|+.+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~-----l~-l~------~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN-----LS-IG------K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT-----CB-CC------S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG
T ss_pred HHHhcCCCCcEEEEeCCCC-----ce-ec------c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc
Confidence 3445788899998876421 11 00 0 0 267899999876 477777777764 6899999998632
Q ss_pred C-CChH---HHHHHHh--CCCcCcEEEecCCCCCHHHHHHHH--hcCCCCcEEEecccccChhHHHHHhhc---CCCceE
Q 008051 475 G-SSDW---GMQCVLR--GCPKLRKFEIRDCPFGDAALLSGL--DKCESMRSLWMSACNVTMDGCKLLASK---KPRLNV 543 (579)
Q Consensus 475 ~-i~~~---~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~l~~~---~p~l~~ 543 (579)
. ..+. ++..++. .+|+|+.|++.+|.+++.....+. ..+++|+.|+|+.|.+++.|.+.+... +|+++.
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence 1 1111 1222222 489999999999999876544444 257899999999999999998888753 578877
Q ss_pred EEecccccc
Q 008051 544 EVIKEAESD 552 (579)
Q Consensus 544 ~~~~~~~~~ 552 (579)
-.+..++..
T Consensus 312 L~L~~n~i~ 320 (362)
T 2ra8_A 312 INMKYNYLS 320 (362)
T ss_dssp EECCSBBCC
T ss_pred EECCCCcCC
Confidence 666666543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.03 E-value=1.9e-10 Score=108.87 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=136.9
Q ss_pred cCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHH
Q 008051 320 HCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVA 398 (579)
Q Consensus 320 ~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~ 398 (579)
.+++|+.|+++++ +.. +.. ...+++|+.|+++++. +++... ...+++|++|.+..+.+++..
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~-~~~l~~L~~L~L~~n~---------i~~~~~---~~~l~~L~~L~L~~n~l~~~~-- 101 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDNQ---------ITDLAP---LKNLTKITELELSGNPLKNVS-- 101 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC---------CCCCGG---GTTCCSCCEEECCSCCCSCCG--
T ss_pred HcCCcCEEEeeCCCccC--chh-hhccCCCCEEEccCCc---------CCCChh---HccCCCCCEEEccCCcCCCch--
Confidence 4679999999875 222 122 3568999999999663 433222 456899999988777776532
Q ss_pred HHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCC
Q 008051 399 TIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSS 477 (579)
Q Consensus 399 ~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~ 477 (579)
. ...+++|+.|+++++. ++..+ . +..+++|+.|+++++ +++... ...+++|+.|++++|.++
T Consensus 102 ~-~~~l~~L~~L~l~~n~------l~~~~------~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 102 A-IAGLQSIKTLDLTSTQ------ITDVT------P-LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp G-GTTCTTCCEEECTTSC------CCCCG------G-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCC
T ss_pred h-hcCCCCCCEEECCCCC------CCCch------h-hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCC
Confidence 2 3478999999999765 44322 1 457899999999883 443222 467899999999999987
Q ss_pred hHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 478 DWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 478 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
+... +..+++|++|++++|.+++.. .+..+++|+.|++++|+++... . ...+|+++.-.+..++.
T Consensus 165 ~~~~---l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 165 DLTP---LANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCGG---GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEEEEEEEE
T ss_pred CChh---hcCCCCCCEEECCCCccCcCh---hhcCCCCCCEEEccCCccCccc--c-ccCCCCCCEEEccCCee
Confidence 5332 577999999999999887642 2788999999999999987644 2 35678887766666644
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=1.6e-10 Score=101.65 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=71.6
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccC-CChHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAG-SSDWG 480 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~ 480 (579)
.+++|+.|+++++. ++.. .. ..+..+++|+.|++++ .+++.....+ ..+++|+.|++++|. +++..
T Consensus 86 ~l~~L~~L~l~~n~------l~~~----~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 86 GLSNLERLRIMGKD------VTSD----KI-PNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp TCTTCCEEEEECTT------CBGG----GS-CCCTTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG
T ss_pred cCCCCCEEEeECCc------cCcc----cC-hhhcCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH
Confidence 57788888887654 2210 00 1123578888888877 4665444444 567888888888887 66532
Q ss_pred HHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 481 MQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 481 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|+++.
T Consensus 154 ---~l~~l~~L~~L~l~~n~i~~~---~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 ---PLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---GGGGCSSCCEEECTTBCCCCC---TTGGGCSSCCEEEECBC----
T ss_pred ---hhcCCCCCCEEECCCCCCcCh---HHhccCCCCCEEEeeCcccCC
Confidence 346688888898888888763 267788888899888888754
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=2.2e-10 Score=107.40 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=113.4
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFL 373 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 373 (579)
.+++|+.|++++|.+..-. -+..+++|+.|+++++ +.+.. . ...+++|+.|+++++. +++.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~---~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~---------l~~~--- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK---------VKDL--- 105 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC---------CCCG---
T ss_pred hcCcccEEEccCCCcccCh---hHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc---------CCCC---
Confidence 4677888888888754321 2456788888888764 22211 1 3456778888777432 2210
Q ss_pred HHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cC
Q 008051 374 AVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LT 452 (579)
Q Consensus 374 ~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 452 (579)
.. ...+++|+.|+++++. ++..+ .+..+++|+.|+++++ ++
T Consensus 106 ------------------------~~-l~~l~~L~~L~L~~n~------i~~~~-------~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 106 ------------------------SS-LKDLKKLKSLSLEHNG------ISDIN-------GLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp ------------------------GG-GTTCTTCCEEECTTSC------CCCCG-------GGGGCTTCCEEECCSSCCC
T ss_pred ------------------------hh-hccCCCCCEEECCCCc------CCCCh-------hhcCCCCCCEEEccCCcCC
Confidence 00 1256778888887654 33211 1335788888888773 44
Q ss_pred hHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHH
Q 008051 453 DLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGC 531 (579)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 531 (579)
+. .....+++|+.|++++|.+++... +..+++|++|++++|.+++. ..+..+++|+.|++++|+++..+.
T Consensus 148 ~~---~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l---~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 148 DI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred cc---hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC---hhhccCCCCCEEECcCCcccCCcc
Confidence 32 223567899999999998865332 57789999999999988773 347889999999999998765443
No 91
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.96 E-value=4.7e-10 Score=93.93 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhh---CCCCCeEeccCC-Cccccccccccccc
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATN---CKNLTELDIQEN-GIEDISGSWLSCFP 188 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~-~i~~~~~~~l~~l~ 188 (579)
..|++|+++++.+++.++..+. .+++|++|+|++|..+++.++..+... +++|++|++++| .+++.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~--- 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH--- 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG---
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh---
Confidence 4688888888888888888775 788888888888888888888888752 567888888887 46666644332
Q ss_pred ccCCccceeecccccCCCCHHH--HHHHHHhCCCCC
Q 008051 189 ESFTSLEVLNFANVNSEVDFDA--LEKLVSRCKSLK 222 (579)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~--l~~~~~~~~~L~ 222 (579)
.+++|++|+++++. .+++.. ...+-..+|+++
T Consensus 137 -~~~~L~~L~L~~c~-~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLP-GVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp -GCTTCCEEEEESCT-TCCCHHHHHHHHHHHCTTCE
T ss_pred -cCCCCCEEECCCCC-CCCchHHHHHHHHHHCCCcE
Confidence 35667777776665 344433 333445566554
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.95 E-value=1.4e-10 Score=107.72 Aligned_cols=105 Identities=14% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
+++|+.|+++++.++.. ..+ ..+++|++|+++++ .++. +. .+..+++|++|++++|.++......+ ..+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l-~~l~~L~~L~l~~n-~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~----~~l 108 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGI-QYLPNVRYLALGGN-KLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVF----DKL 108 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTG-GGCTTCCEEECTTS-CCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTT----TTC
T ss_pred ccceeeeeeCCCCcccc--ccc-ccCCCCcEEECCCC-CCCC--ch-hhcCCCCCCEEECCCCccCccChhHh----cCC
Confidence 45566666666554431 122 25566666666665 3433 22 23356666666666666554332211 244
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
++|++|+++++. ++. ..+..+..+++|++|+++++.
T Consensus 109 ~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 109 TNLKELVLVENQ--LQS-LPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp TTCCEEECTTSC--CCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEECCCCc--CCc-cCHHHhccCCCCCEEECCCCc
Confidence 566666666553 221 001112455666666666553
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.94 E-value=4.4e-12 Score=118.46 Aligned_cols=205 Identities=12% Similarity=0.085 Sum_probs=123.0
Q ss_pred CCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHH
Q 008051 297 ANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVS 376 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 376 (579)
++|++|+++++.++..... .+..+++|+.|+++++.-..........+++|+.|+++++. ++.... ...
T Consensus 28 ~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---------l~~~~~-~~~ 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---------IQSLAL-GAF 96 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---------CCEECT-TTT
T ss_pred CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc---------cCccCh-hhh
Confidence 4688888888875432211 23567888888887642111111122456788888888553 222111 112
Q ss_pred cCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHH
Q 008051 377 HGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLT 455 (579)
Q Consensus 377 ~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~ 455 (579)
.++++|++|.+..+.++...... ...+++|+.|+++++. +.... +...+..+++|+.|+++++ ++...
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~------l~~~~----l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNL------IQSFK----LPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSC------CCCCC----CCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCCccccEEECCCCCccccCchh-cccCCCCCEEECcCCc------cceec----CchhhccCCCCCEEECCCCCCCcCC
Confidence 34677888866555544321111 2367899999998765 33211 1122456889999999873 33321
Q ss_pred HHHHHhcccCcC----eeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 456 FEYIGQYAKNLE----LLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 456 ~~~~~~~~~~L~----~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
...+ ..+++|+ .|++++|.++.... ......+|++|++++|.++.. ....+..+++|+.|++++|+++
T Consensus 166 ~~~~-~~l~~L~~l~l~L~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 166 CTDL-RVLHQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGGG-HHHHTCTTCCEEEECCSSCCCEECT--TSSCSCCEEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSCBC
T ss_pred HHHh-hhhhhccccceeeecCCCcccccCc--cccCCCcccEEECCCCceeec-CHhHhcccccccEEEccCCccc
Confidence 1111 2234455 88999998764221 112245899999999988754 3355688999999999999965
No 94
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.93 E-value=6.4e-10 Score=73.34 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=34.6
Q ss_pred CCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 10 QNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 10 ~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
+...|.+||+|++.+||+||+ .+++.+++.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 456799999999999999999 8999999999999999974
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.89 E-value=9.3e-11 Score=108.99 Aligned_cols=178 Identities=14% Similarity=0.134 Sum_probs=104.5
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFL 373 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 373 (579)
.+++|+.|+++++.+.... -+..+++|+.|+++++ +.+ +. ....+++|+.|+++++. ++....
T Consensus 39 ~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~---------l~~~~~- 102 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQ---------LQSLPN- 102 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSC---------CCCCCT-
T ss_pred cccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCc---------cCccCh-
Confidence 5678899999888754322 2457888888888764 222 11 23457788888887542 221000
Q ss_pred HHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cC
Q 008051 374 AVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LT 452 (579)
Q Consensus 374 ~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 452 (579)
.....+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++
T Consensus 103 -------------------------~~~~~l~~L~~L~L~~n~------l~~~~~-----~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 103 -------------------------GVFDKLTNLKELVLVENQ------LQSLPD-----GVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp -------------------------TTTTTCTTCCEEECTTSC------CCCCCT-----TTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------hHhcCCcCCCEEECCCCc------CCccCH-----HHhccCCCCCEEECCCCccC
Confidence 001245667777766543 222211 11234667777777662 33
Q ss_pred hHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 453 DLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
... ......+++|+.|++++|.+++.. ...+..+++|++|++++|.++.. ....+..+++|+.|++++|+++
T Consensus 147 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 147 SLP-KGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred ccC-HHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCcc
Confidence 211 112245678888888888765322 12235578888888888877653 2345677888888888888753
No 96
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.89 E-value=2.2e-08 Score=86.48 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=101.9
Q ss_pred chHHHHHHHhcCCCCCeeeecCc-ccChHHHHHHHh---hCCCCcEEeecCCCCCChHHHHHH---HhhCCCCCeEeccC
Q 008051 101 IHPWLVAFADRYPSLEELRLKRM-SVSDESLEFLAV---SFPNFKVLSLSSCDGFSTDGLAAI---ATNCKNLTELDIQE 173 (579)
Q Consensus 101 ~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~ 173 (579)
....+..+...++.|++|+|+++ .+++.+...++. ..++|++|+|+++ .+++.+...+ +...++|++|+|++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 35567777888999999999999 899988777654 3568999999999 7888775444 44678999999999
Q ss_pred CCcccccccccccccccCCccceeec--ccccCCCCHHH---HHHHHHhCCCCCeeEecCcc
Q 008051 174 NGIEDISGSWLSCFPESFTSLEVLNF--ANVNSEVDFDA---LEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 174 ~~i~~~~~~~l~~l~~~~~~L~~L~l--~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~ 230 (579)
|.+++.+...+.......++|++|++ +++ .++... +...+...++|++|+++++.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N--~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQ--PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS--CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCC--CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99999887777766677889999999 555 377766 44556677899999998886
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=1.4e-09 Score=112.03 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=104.0
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc-cChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT-VEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFL 373 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 373 (579)
.+++|+.|+++++.+..-. -+..+++|+.|+|+++ +.... . ...+++|+.|+++++. +++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~---------l~~---- 101 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK---------IKD---- 101 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC---------CCC----
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC---------CCC----
Confidence 4567888888887744321 2456788888888764 22211 1 3557788888887542 222
Q ss_pred HHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cC
Q 008051 374 AVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LT 452 (579)
Q Consensus 374 ~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~ 452 (579)
.+ . ...+++|+.|+|+++. +...+ .+..+++|+.|+|+++ ++
T Consensus 102 -----l~------------------~-l~~l~~L~~L~Ls~N~------l~~l~-------~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 102 -----LS------------------S-LKDLKKLKSLSLEHNG------ISDIN-------GLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp -----CT------------------T-STTCTTCCEEECTTSC------CCCCG-------GGGGCTTCSEEECCSSCCC
T ss_pred -----Ch------------------h-hccCCCCCEEEecCCC------CCCCc-------cccCCCccCEEECCCCccC
Confidence 00 0 1245667777776544 22211 1335677777777662 33
Q ss_pred hHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChh
Q 008051 453 DLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMD 529 (579)
Q Consensus 453 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 529 (579)
+. .....+++|+.|+|++|.+++... +..+++|++|+|++|.+++. ..+..+++|+.|+|++|+++..
T Consensus 145 ~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 145 DI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEEEECC
T ss_pred Cc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCcCcCC
Confidence 32 223456788888888887754322 46678888888888877663 3467788888888888876543
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=1.3e-09 Score=95.64 Aligned_cols=127 Identities=18% Similarity=0.166 Sum_probs=95.3
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+ .+..+++|+.|++++ .+++.....+ ..+++|+.|++++|.+++...
T Consensus 64 ~l~~L~~L~l~~n~------~~~~~-------~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 64 YAHNIKDLTINNIH------ATNYN-------PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp GCTTCSEEEEESCC------CSCCG-------GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSSBCBGGGH
T ss_pred cCCCCCEEEccCCC------CCcch-------hhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCCccCcHhH
Confidence 67899999998764 33211 234689999999988 4554333333 468999999999999987555
Q ss_pred HHHHhCCCcCcEEEecCCC-CCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEecccc
Q 008051 482 QCVLRGCPKLRKFEIRDCP-FGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAE 550 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~ 550 (579)
..+ ..+++|++|++++|. +++. ..+..+++|+.|++++|++++.. -...+|+++.-.+.+++
T Consensus 130 ~~l-~~l~~L~~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 130 TKI-NTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp HHH-TTCSSCCEEECCSCTBCCCC---GGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred HHH-hhCCCCCEEEccCCCCcccc---HhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence 444 779999999999997 7764 36889999999999999987643 23567888877777665
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.86 E-value=5.9e-11 Score=110.21 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=106.2
Q ss_pred CCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHHHH
Q 008051 297 ANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVS 376 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 376 (579)
+++++|+++++.+..... ..+..+++|+.|+++++.-..........+++|+.|+++++. ++.
T Consensus 37 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~---------l~~------- 99 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK---------LQA------- 99 (270)
T ss_dssp TTCSEEECCSSCCSCCCT-TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC---------CCC-------
T ss_pred CCCCEEECcCCCCCeeCH-HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc---------CCc-------
Confidence 567888888776432211 123456677777776531111111122345667777766332 111
Q ss_pred cCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHH
Q 008051 377 HGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLT 455 (579)
Q Consensus 377 ~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~ 455 (579)
... .....+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++...
T Consensus 100 ------------------~~~-~~~~~l~~L~~L~l~~n~------l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 100 ------------------LPI-GVFDQLVNLAELRLDRNQ------LKSLPP-----RVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp ------------------CCT-TTTTTCSSCCEEECCSSC------CCCCCT-----TTTTTCTTCCEEECCSSCCCCCC
T ss_pred ------------------CCH-hHcccccCCCEEECCCCc------cCeeCH-----HHhCcCcCCCEEECCCCcCCccC
Confidence 000 011256778888887654 332221 11245788888888773 33211
Q ss_pred HHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 456 FEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 456 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
......+++|+.|++++|.++.... ..+..+++|++|++++|.++.. ....+..+++|+.|++++|++
T Consensus 150 -~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 150 -KGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred -HhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCe
Confidence 1123457899999999998754221 2235689999999999988753 234567889999999999985
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.83 E-value=9.7e-11 Score=109.73 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=75.6
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++.. .......+++|+.|++++|.++...
T Consensus 98 ~l~~L~~L~l~~N~------l~~l~~-----~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~- 164 (290)
T 1p9a_G 98 TLPALTVLDVSFNR------LTSLPL-----GALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELP- 164 (290)
T ss_dssp TCTTCCEEECCSSC------CCCCCS-----STTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCC-
T ss_pred cCCCCCEEECCCCc------CcccCH-----HHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCccC-
Confidence 57788888888654 343321 11345788999999873 3321 1112346789999999999876321
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
...+..+++|++|++++|.++. ++..+..+++|+.|++++|++.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred HHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence 1233568999999999998874 4555666789999999999853
No 101
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.79 E-value=2.4e-10 Score=106.57 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=47.5
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+++|++|+++++.++......+. .+++|++|+++++ .++... ...+..+++|++|++++|.+....... ...
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~ 122 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVETNLASLENFP----IGH 122 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCC----CTT
T ss_pred cccCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCC-ccCccC-hhhhcCCccccEEECCCCCccccCchh----ccc
Confidence 345566666655554432211222 4455566665555 232211 112234555566655555544332211 113
Q ss_pred CCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCc
Q 008051 191 FTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKS 229 (579)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 229 (579)
+++|++|+++++. +....++..+..+++|++|+++++
T Consensus 123 l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 123 LKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCEEECcCCc--cceecCchhhccCCCCCEEECCCC
Confidence 4455555555442 211111222344455555555544
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=3.3e-09 Score=99.33 Aligned_cols=125 Identities=20% Similarity=0.180 Sum_probs=92.9
Q ss_pred HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHH
Q 008051 402 RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWG 480 (579)
Q Consensus 402 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 480 (579)
..+++|+.|.++++. ++..+ .+..+++|+.|++++ .+++. . ....+++|+.|++++|.+++.
T Consensus 87 ~~l~~L~~L~l~~n~------l~~~~-------~l~~l~~L~~L~L~~n~i~~~--~-~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 87 ANLKNLGWLFLDENK------VKDLS-------SLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp TTCTTCCEEECCSSC------CCCGG-------GGTTCTTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCCC-
T ss_pred ccCCCCCEEECCCCc------CCCCh-------hhccCCCCCEEECCCCcCCCC--h-hhcCCCCCCEEEccCCcCCcc-
Confidence 368899999998765 44221 145689999999988 34442 1 235689999999999998763
Q ss_pred HHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 481 MQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 481 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
..+..+++|++|++++|.+++.. . +..+++|+.|++++|.++.-. . ...+++++.-.+.+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~i~~l~--~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEEEEEEE
T ss_pred --hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCcCCCCh--h-hccCCCCCEEECcCCcc
Confidence 34567899999999999887742 2 888999999999999987642 2 34678887766666644
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=3e-09 Score=88.66 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=84.8
Q ss_pred CCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHH
Q 008051 404 CPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQ 482 (579)
Q Consensus 404 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 482 (579)
.++|+.|+++++.. + +..+...+..+++|+.|+++++ +++. .....+++|+.|++++|.+++. +.
T Consensus 16 ~~~l~~L~l~~n~l------~----~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRS------N----EGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LE 81 (149)
T ss_dssp GGGCSEEECTTCBC------B----TTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-TH
T ss_pred CccCeEEEccCCcC------C----hhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HH
Confidence 45788888877542 2 0011112245788888888773 4433 2234678899999999988652 44
Q ss_pred HHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHH--HHHhhcCCCceE
Q 008051 483 CVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGC--KLLASKKPRLNV 543 (579)
Q Consensus 483 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~~p~l~~ 543 (579)
.....+++|++|++++|.+++......+..+++|+.|++++|+++.... ......+|+++.
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 5556689999999999988875555778889999999999998765432 223445677643
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=2.7e-09 Score=88.97 Aligned_cols=63 Identities=30% Similarity=0.421 Sum_probs=33.2
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIED 178 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 178 (579)
.+++|++|+++++.++.. ..+ ..+++|++|+++++ .++.. ++.....+++|++|++++|.+++
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANL-PKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTC-CCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSCCCS
T ss_pred hcCCCcEEECcCCCCCCc--hhh-hcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCcCCC
Confidence 456666666666655543 222 24556666666665 33321 33344446666666666665444
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.69 E-value=7.7e-09 Score=106.61 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=93.0
Q ss_pred HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHH
Q 008051 402 RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWG 480 (579)
Q Consensus 402 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 480 (579)
..+++|+.|.|+++. +...+ .+..+++|+.|+++++ +.+. . -...+++|+.|+|++|.+++.
T Consensus 84 ~~l~~L~~L~Ls~N~------l~~l~-------~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l- 146 (605)
T 1m9s_A 84 TNLKNLGWLFLDENK------IKDLS-------SLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI- 146 (605)
T ss_dssp GGCTTCCEEECCSSC------CCCCT-------TSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCCCC-
T ss_pred ccCCCCCEEECcCCC------CCCCh-------hhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccCCc-
Confidence 368899999998765 33221 1346899999999883 4442 2 235789999999999998763
Q ss_pred HHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHhhcCCCceEEEeccccc
Q 008051 481 MQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEAES 551 (579)
Q Consensus 481 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~l~~~~~~~~~~ 551 (579)
..+..+++|+.|+|++|.+.+... +..+++|+.|+|++|.++.. .. ...+++++...+..++.
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEECCSEEE
T ss_pred --hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEccCCcC
Confidence 345779999999999998876422 88899999999999998764 22 34678887766666644
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.69 E-value=1.6e-09 Score=92.51 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=27.4
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHH--HHHHhcCCCCcEEEecccc
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAAL--LSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~ 525 (579)
.+++|+.|++++|.+++......+..+++|+.|++++|+++.... ...+..+++|+.|++++|.
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 344555555555544332111122334555555555554433211 1234445555555555554
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=2.8e-10 Score=116.64 Aligned_cols=206 Identities=15% Similarity=0.079 Sum_probs=128.3
Q ss_pred cCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecCCCCcchhcccchhHHHHH
Q 008051 295 VCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLA 374 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.++.|+.|+++++.+. .+..-+..+++|+.|+++++.....+..... .++.. +... .
T Consensus 347 ~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~~~~-----------~~~~----~ 403 (567)
T 1dce_A 347 TDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMR------ALDPL-----------LYEK----E 403 (567)
T ss_dssp TTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHCTG-----------GGHH----H
T ss_pred cCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHH------hcccc-----------cCCH----H
Confidence 4678888888888753 5555667788888888765422111111111 01111 0111 1
Q ss_pred HHcCCCcchhhh-hcCcCCC--------HHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCccccee
Q 008051 375 VSHGCPRLQYVL-YFCQAMT--------NAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRL 445 (579)
Q Consensus 375 l~~~~~~L~~L~-~~~~~~~--------~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L 445 (579)
....+++|+.|. +..+.+. ...+..+. ...|+.|+++++. ++.+| . +..+++|+.|
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~------l~~lp------~-~~~l~~L~~L 468 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKD------LTVLC------H-LEQLLLVTHL 468 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSC------CSSCC------C-GGGGTTCCEE
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCC------CCCCc------C-ccccccCcEe
Confidence 112244455553 2222111 11222222 2469999998765 44433 1 3468899999
Q ss_pred ecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccc
Q 008051 446 SLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSAC 524 (579)
Q Consensus 446 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 524 (579)
+++++ ++ .++.....+++|+.|++++|.++. +. .+.++++|+.|++++|.++....+..+..+++|+.|++++|
T Consensus 469 ~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 469 DLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp ECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 99883 44 233334678999999999999875 33 45779999999999999887422577889999999999999
Q ss_pred ccChh--HHHHHhhcCCCceE
Q 008051 525 NVTMD--GCKLLASKKPRLNV 543 (579)
Q Consensus 525 ~i~~~--~~~~l~~~~p~l~~ 543 (579)
+++.. ....+...+|++++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSE
T ss_pred cCCCCccHHHHHHHHCcccCc
Confidence 97543 34445566888764
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.65 E-value=4e-09 Score=98.65 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=63.9
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++++.|+++++.++......+. .+++|++|+++++ .++. +... ..+++|++|++++|.++... .....++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~ 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRA-ELTK--LQVD-GTLPVLGTLDLSHNQLQSLP-----LLGQTLP 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTS-CCCE--EECC-SCCTTCCEEECCSSCCSSCC-----CCTTTCT
T ss_pred CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCC-ccCc--ccCC-CCCCcCCEEECCCCcCCcCc-----hhhccCC
Confidence 5788888888876653333333 6778888888877 4543 1111 46788888888888765322 2234567
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. ++.- .+..+..+++|++|+++++.
T Consensus 101 ~L~~L~l~~N~--l~~l-~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 101 ALTVLDVSFNR--LTSL-PLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp TCCEEECCSSC--CCCC-CSSTTTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCc--Cccc-CHHHHcCCCCCCEEECCCCC
Confidence 78888887663 2210 01123556777777777664
No 109
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.64 E-value=4.7e-09 Score=97.30 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=91.0
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+++++|+++++.++......+. .+++|++|+++++ .++.. ...++..+++|++|++++|.++...... ...++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFH-RLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNKLQALPIGV----FDQLV 109 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSS-SCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTT----TTTCS
T ss_pred CCCCEEECcCCCCCeeCHHHhc-CCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhH----ccccc
Confidence 4567777777665432222222 5567777777766 33321 1122345677777777777655443222 22456
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHH-HHHhhCCCCeeecccccccccChhhHHHHHHHHhc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQ-KLLVLAPQLVDLGTGSFSQELTDDQRAELESAFNK 271 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 271 (579)
+|++|+++++. ++... +..+..+++|++|+++++. +..++ ..+..+++|+.|++......
T Consensus 110 ~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--------------- 170 (270)
T 2o6q_A 110 NLAELRLDRNQ--LKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK--------------- 170 (270)
T ss_dssp SCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS---------------
T ss_pred CCCEEECCCCc--cCeeC-HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc---------------
Confidence 67777776553 11100 1123456677777776664 21111 12344455555544322110
Q ss_pred CcccccccCccccccchHhhhhhcCCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCc
Q 008051 272 CKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDT 332 (579)
Q Consensus 272 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 332 (579)
.+.. .....+++|++|++++|.++.... ..+..+++|+.|+++++
T Consensus 171 -----------~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 171 -----------RVPE----GAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -----------CCCT----TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred -----------EeCh----hHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCC
Confidence 0111 112356778888888887442111 12356778888888763
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=3.2e-09 Score=90.55 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=93.2
Q ss_pred hCCCCceEEeeccCCCCCCccC--CCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVT--NEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDW 479 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 479 (579)
..++|+.|+++++. ++ .++ ..+..+++|+.|+++++ +++. .....+++|+.|++++|.+++.
T Consensus 22 ~~~~L~~L~l~~n~------l~~~~i~------~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 22 TPAAVRELVLDNCK------SNDGKIE------GLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp CTTSCSEEECCSCB------CBTTBCS------SCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC
T ss_pred CcccCCEEECCCCC------CChhhHH------HHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH
Confidence 34789999998765 33 111 12346789999999873 4443 2335679999999999998652
Q ss_pred HHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHH--HHHhhcCCCceEEEeccc
Q 008051 480 GMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGC--KLLASKKPRLNVEVIKEA 549 (579)
Q Consensus 480 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~~p~l~~~~~~~~ 549 (579)
+......+++|+.|++++|.+++......+..+++|+.|++++|+++.... ......+|+++.-.+..+
T Consensus 87 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 87 -LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp -CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred -HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 445556689999999999998874333677889999999999999765432 234457888866555544
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.63 E-value=9.7e-09 Score=94.51 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=74.8
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+.. .. ++|+.|++++ .+++. .. ...+++|+.|++++|.+++..
T Consensus 83 ~l~~L~~L~L~~N~------l~~l~~~-------~~-~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 83 DLTKLEELSVNRNR------LKNLNGI-------PS-ACLSRLFLDNNELRDT--DS-LIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp TCSSCCEEECCSSC------CSCCTTC-------CC-SSCCEEECCSSCCSBS--GG-GTTCTTCCEEECTTSCCCBCG-
T ss_pred cCCCCCEEECCCCc------cCCcCcc-------cc-CcccEEEccCCccCCC--hh-hcCcccccEEECCCCcCCCCh-
Confidence 57778888887654 3322210 11 7888888877 34442 11 356789999999999987632
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChh
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMD 529 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 529 (579)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|+++..
T Consensus 145 --~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 --MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 346789999999999988775 5678899999999999997554
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.63 E-value=9.8e-10 Score=100.70 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++... ......+++|+.|++++|.++....
T Consensus 81 ~l~~L~~L~L~~n~------l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 81 DLTELGTLGLANNQ------LASLPL-----GVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TCTTCCEEECTTSC------CCCCCT-----TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCcCCEEECCCCc------ccccCh-----hHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCH
Confidence 56778888887654 332221 12245678888888773 33211 1122457899999999998764221
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChh
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMD 529 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 529 (579)
..+..+++|++|++++|.++.. ....+..+++|+.|++++|+++-.
T Consensus 149 -~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 -GAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -HHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCceeCC
Confidence 2235689999999999988753 234678899999999999997543
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=2.2e-08 Score=95.69 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccccChHHHHHHHhcccCcC-eee
Q 008051 392 MTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLE-LLS 470 (579)
Q Consensus 392 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~ 470 (579)
+.......+...|++|+.+++..+. ++.++ + ..+..|++|+++++.+.+..-+ ......|++|+ .+.
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~------i~~I~-~----~aF~~~~~L~~l~l~~ni~~I~-~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTN------ATTIP-D----FTFAQKKYLLKIKLPHNLKTIG-QRVFSNCGRLAGTLE 280 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBC------CCEEC-T----TTTTTCTTCCEEECCTTCCEEC-TTTTTTCTTCCEEEE
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCC------cceec-H----hhhhCCCCCCEEECCcccceeh-HHHhhCChhccEEEE
Confidence 4455555566667888888876532 33222 1 1234577777777765322111 01124566677 777
Q ss_pred ccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEE
Q 008051 471 VAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLW 520 (579)
Q Consensus 471 l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 520 (579)
+.+ .++..+- ..+.+|++|++|++.++.+... -...+.+|++|+.+.
T Consensus 281 l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~i~~I-~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA-SVTAIEF-GAFMGCDNLRYVLATGDKITTL-GDELFGNGVPSKLIY 327 (329)
T ss_dssp ECT-TCCEECT-TTTTTCTTEEEEEECSSCCCEE-CTTTTCTTCCCCEEE
T ss_pred Ecc-cceEEch-hhhhCCccCCEEEeCCCccCcc-chhhhcCCcchhhhc
Confidence 765 3321111 1225567777777766655432 123456667776664
No 114
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.53 E-value=1.1e-06 Score=75.02 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=97.5
Q ss_pred chHHHHHHHhcCCCCCeeeecCc-ccChHHHHHHHhhCC---CCcEEeecCCCCCChHHH---HHHHhhCCCCCeEeccC
Q 008051 101 IHPWLVAFADRYPSLEELRLKRM-SVSDESLEFLAVSFP---NFKVLSLSSCDGFSTDGL---AAIATNCKNLTELDIQE 173 (579)
Q Consensus 101 ~~~~l~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~---~L~~L~l~~~~~~~~~~l---~~~~~~~~~L~~L~l~~ 173 (579)
+...+..+....+.|++|+|+++ .+.+++...++..+. .|+.|+|+++ .+++.+. ..++...+.|++|+|++
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 45567777778899999999986 799988777765444 7999999998 7888764 44555678999999999
Q ss_pred CCcccccccccccccccCCccceeecccccC-CCCHH---HHHHHHHhCCCCCeeEecCcc
Q 008051 174 NGIEDISGSWLSCFPESFTSLEVLNFANVNS-EVDFD---ALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 174 ~~i~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~~---~l~~~~~~~~~L~~L~l~~~~ 230 (579)
|.|++.+...+.......+.|++|+++++.. .+... .+...+..-+.|+.|+++.+.
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 9999988877776666677799999976432 34544 355556777888888887554
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.50 E-value=1.2e-07 Score=87.14 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccc
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIED 178 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 178 (579)
+++|++|+++++.++... .+ ..+++|++|+++++ .++. +.. +..+++|++|++++|.++.
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N-~i~~--~~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHN-QISD--LSP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSSCCSC
T ss_pred cCcCcEEECcCCCcccch--HH-hhCCCCCEEECCCC-ccCC--Chh-hccCCCCCEEECCCCccCC
Confidence 455556666555544321 22 24556666666655 3333 111 3355666666666665443
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.49 E-value=2.6e-08 Score=91.12 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++++.|+++++.++......+. .+++|++|+++++ .++.. ....+..+++|++|++++|.++......+ ..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYN-QLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVF----DHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTT----TTCT
T ss_pred CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCC-cCCcc-CHhHhccCCcCCEEECCCCcccccChhHh----cccC
Confidence 4566777766665443222222 5566777777765 34331 11223456677777777776554432222 2456
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. ++. .....+..+++|++|+++++.
T Consensus 108 ~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 108 QLDKLYLGGNQ--LKS-LPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp TCCEEECCSSC--CCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCCc--CCC-cChhHhccCCcccEEECcCCc
Confidence 66777766553 221 001112455666666666654
No 117
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.48 E-value=7.2e-09 Score=94.13 Aligned_cols=197 Identities=15% Similarity=0.093 Sum_probs=101.3
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccC-CCcccccccccccccccC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQE-NGIEDISGSWLSCFPESF 191 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~~~ 191 (579)
+++++|+++++.++......+. .+++|++|+++++..++... ...+..+++|++|++++ +.++......+ ..+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f----~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDAL----KEL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSE----ECC
T ss_pred CcccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHh----CCC
Confidence 3677777777765543222232 56778888887763243311 11334677888888877 66654433222 246
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCC---eeEecCccChHHHHH-HHhhCCCCe-eecccccccccChhhHHHHH
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLK---DLKVNKSISLEQLQK-LLVLAPQLV-DLGTGSFSQELTDDQRAELE 266 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~---~L~l~~~~~~~~l~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~l~ 266 (579)
++|++|+++++. ++. ++. +..+++|+ .|+++++..+..++. .+..+++|+ .|++......
T Consensus 105 ~~L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~---------- 169 (239)
T 2xwt_C 105 PLLKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT---------- 169 (239)
T ss_dssp TTCCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC----------
T ss_pred CCCCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc----------
Confidence 678888877653 221 222 35566666 777777622222211 234455555 5544321110
Q ss_pred HHHhcCcccccccCccccccchHhhhhhcCCCCCeeeecccc-CCcHHHHHHHHcC-CcCcEEeccCc-cChHHHHHHhc
Q 008051 267 SAFNKCKNIHKLSGLWQATALYFPALSPVCANLTFLNLSYAT-LGSSELVKLLMHC-PLLKRLWVLDT-VEDRGLEAVGS 343 (579)
Q Consensus 267 ~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~-~~L~~L~l~~~-~~~~~l~~~~~ 343 (579)
.+.. ..... ++|++|++++|. +..-.. ..+..+ ++|+.|+++++ +.. +. ..
T Consensus 170 ----------------~i~~----~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~--l~--~~ 223 (239)
T 2xwt_C 170 ----------------SVQG----YAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTA--LP--SK 223 (239)
T ss_dssp ----------------EECT----TTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCC--CC--CT
T ss_pred ----------------ccCH----hhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCcccc--CC--hh
Confidence 0111 11112 567777777773 432111 123455 77777777753 211 00 01
Q ss_pred cCCCCceEEEecC
Q 008051 344 SCPLLEELRVFPA 356 (579)
Q Consensus 344 ~~~~L~~L~l~~~ 356 (579)
.+++|+.|++.++
T Consensus 224 ~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCSEEECTTC
T ss_pred HhccCceeeccCc
Confidence 3567888877643
No 118
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.46 E-value=4.4e-09 Score=95.59 Aligned_cols=59 Identities=12% Similarity=0.029 Sum_probs=37.1
Q ss_pred CCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCcc-ChHHHHHHhccCCCCceEEEec
Q 008051 296 CANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTV-EDRGLEAVGSSCPLLEELRVFP 355 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~l~~~~~~~~~L~~L~l~~ 355 (579)
.++|++|+++++.++.-.. ..+..+++|+.|+++++. -..........+++|+.|++++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp CTTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred CCcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 3479999999988543221 123568888999888652 2111111235678888888885
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.44 E-value=1.3e-08 Score=103.76 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=75.9
Q ss_pred cchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHH
Q 008051 381 RLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYI 459 (579)
Q Consensus 381 ~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~ 459 (579)
+|+.|.++.+.++.. .. .+++|+.|+++++. ++.+|. .+++|+.|+++++ ++. +..+
T Consensus 121 ~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls~N~------l~~lp~---------~l~~L~~L~Ls~N~L~~--lp~l 178 (571)
T 3cvr_A 121 SLKHLDVDNNQLTML--PE---LPALLEYINADNNQ------LTMLPE---------LPTSLEVLSVRNNQLTF--LPEL 178 (571)
T ss_dssp TCCEEECCSSCCSCC--CC---CCTTCCEEECCSSC------CSCCCC---------CCTTCCEEECCSSCCSC--CCCC
T ss_pred CCCEEECCCCcCCCC--CC---cCccccEEeCCCCc------cCcCCC---------cCCCcCEEECCCCCCCC--cchh
Confidence 555554444444331 00 46778888887654 443321 3578888888773 333 1111
Q ss_pred HhcccCcCeeeccccCCChHHH-H-HHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccChhHHHHHh
Q 008051 460 GQYAKNLELLSVAFAGSSDWGM-Q-CVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLA 535 (579)
Q Consensus 460 ~~~~~~L~~L~l~~~~i~~~~~-~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~ 535 (579)
.++|+.|++++|.++.... . .+....+.|+.|++++|.++. ++..+..+++|+.|++++|+++......+.
T Consensus 179 ---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 179 ---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ---CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred ---hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 1788888888888752111 0 111112334999999998875 455566689999999999998776555544
No 120
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.43 E-value=1.2e-06 Score=74.79 Aligned_cols=124 Identities=13% Similarity=0.224 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHH---hcCcccceeeccc-ccChHHHHHHHh---cccCc
Q 008051 394 NAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVV---RTCTNLQRLSLSG-LLTDLTFEYIGQ---YAKNL 466 (579)
Q Consensus 394 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~L~~L~l~~-~~~~~~~~~~~~---~~~~L 466 (579)
+..+..+...-+.|+.|+|+.+. .+. +.+...+. +....|+.|+|++ .++|.+...++. .-+.|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn-----~ig----d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMK-----RVS----KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCC-----SSC----HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHHHHhcCCCccEEECCCCC-----CCC----HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 44566666667788888886531 255 66655443 3456788888877 578777665543 44778
Q ss_pred CeeeccccCCChHHHHHHHhC---CCcCcEEEecCC---CCCHHH---HHHHHhcCCCCcEEEeccccc
Q 008051 467 ELLSVAFAGSSDWGMQCVLRG---CPKLRKFEIRDC---PFGDAA---LLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 467 ~~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l~~~---~~~~~~---~~~~l~~~~~L~~L~l~~~~i 526 (579)
+.|+|++|.|++.|...+++. .+.|++|+|++| .+++.+ +.+.++..+.|++|+++.|.+
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 888888888888888777665 456888888765 456543 455667778888888876654
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.41 E-value=3.6e-08 Score=86.48 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=64.5
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++.++ .+..+++|+.|+++++ ++. +......+++|+.|++++|.+++.
T Consensus 46 ~l~~L~~L~ls~n~------l~~l~-------~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l-- 108 (198)
T 1ds9_A 46 TLKACKHLALSTNN------IEKIS-------SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL-- 108 (198)
T ss_dssp HTTTCSEEECSEEE------ESCCC-------CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--
T ss_pred cCCCCCEEECCCCC------Ccccc-------ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--
Confidence 56677777776543 33222 1234567777777662 331 222333456777777777776542
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
. -+..+++|++|++++|.+++......+..+++|+.|++++|+++.
T Consensus 109 ~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 2 234567777777777777654333556677777777777777543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.39 E-value=2.9e-08 Score=85.24 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=49.9
Q ss_pred cCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHH--HHHHhcCC
Q 008051 438 TCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAAL--LSGLDKCE 514 (579)
Q Consensus 438 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~ 514 (579)
.+++|+.|+++++ ++... ..+...+++|+.|++++|.+++......+..+++|+.|++++|+++.... ...+..++
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140 (176)
T ss_dssp CCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred cCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC
Confidence 4566777777662 33211 11224566777777777776432211123456777777777776653211 12456677
Q ss_pred CCcEEEecccccCh
Q 008051 515 SMRSLWMSACNVTM 528 (579)
Q Consensus 515 ~L~~L~l~~~~i~~ 528 (579)
+|+.|++++|...+
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 77777777776443
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.37 E-value=1.7e-08 Score=90.81 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=75.4
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. +..++. ..+..+++|+.|+++++ ++... ......+++|+.|++++|.++. +
T Consensus 62 ~l~~L~~L~L~~N~------l~~i~~-----~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~--l 127 (229)
T 3e6j_A 62 SLINLKELYLGSNQ------LGALPV-----GVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLKELFMCCNKLTE--L 127 (229)
T ss_dssp TCTTCCEEECCSSC------CCCCCT-----TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCS--C
T ss_pred CccCCcEEECCCCC------CCCcCh-----hhcccCCCcCEEECCCCcCCccC-hhHhCcchhhCeEeccCCcccc--c
Confidence 56778888887654 332221 11245788888888773 33211 1123467899999999998763 2
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
...+..+++|+.|++++|.++.. ....+..+++|+.|++++|+++
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBC
T ss_pred CcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCcc
Confidence 22336789999999999988753 2256788999999999999965
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.37 E-value=7.4e-08 Score=82.64 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
.++|++|+++++.++.. ..+ ..+++|++|+++++ .++.. ...++..+++|++|++++|.++.... +. ....+
T Consensus 41 ~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~--~~-~l~~l 112 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNSLVELGD--LD-PLASL 112 (176)
T ss_dssp TTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCCCCCGGG--GG-GGGGC
T ss_pred CCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCcCCcchh--hH-hhhcC
Confidence 34677777777665542 222 24566777777666 44431 11223456677777777666544321 11 11245
Q ss_pred CccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 192 TSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
++|++|+++++.-......-..++..+++|+.|++..+.
T Consensus 113 ~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 566666666553100011111234556666666665554
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.28 E-value=3.9e-08 Score=87.12 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=64.4
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++... ......+++|+.|++++|.++...
T Consensus 50 ~l~~L~~L~l~~n~------l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~- 116 (208)
T 2o6s_A 50 ELTSLTQLYLGGNK------LQSLPN-----GVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQLQSLP- 116 (208)
T ss_dssp TCTTCSEEECCSSC------CCCCCT-----TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred ccccCcEEECCCCc------cCccCh-----hhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcCcccC-
Confidence 45667777766543 222221 11234667777777652 33211 111245677888888887765321
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
...+..+++|++|++++|.++.. ....+..+++|+.|++++|+++
T Consensus 117 ~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 117 DGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC
T ss_pred HhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee
Confidence 11235577888888888877643 2244667788888888888743
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.24 E-value=9.7e-08 Score=83.72 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=79.2
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeeccc-ccChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSG-LLTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++.++ .....+++|+.|++++ .++. +.. ...+++|+.|++++|.+++...
T Consensus 68 ~l~~L~~L~l~~n~------l~~l~------~~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 68 GMENLRILSLGRNL------IKKIE------NLDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp HHTTCCEEEEEEEE------ECSCS------SHHHHHHHCSEEEEEEEECCC--HHH-HHHHHHSSEEEESEEECCCHHH
T ss_pred cCCCCCEEECCCCC------ccccc------chhhcCCcCCEEECcCCcCCc--CCc-cccCCCCCEEECCCCcCCchhH
Confidence 57889999998765 44332 1233468899999988 3554 233 3567899999999999986544
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHH---------HHHHHhcCCCCcEEEecccccCh
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAA---------LLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
...+..+++|++|++++|++.+.. ....+..+++|+.|+ +++++.
T Consensus 133 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 345678999999999999876541 234578899999987 777655
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.24 E-value=1.4e-08 Score=90.67 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=75.9
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++... ......+++|+.|++++|.++....
T Consensus 55 ~l~~L~~L~L~~N~------i~~i~~-----~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 55 KLPQLRKINFSNNK------ITDIEE-----GAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp GCTTCCEEECCSSC------CCEECT-----TTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred cCCCCCEEECCCCc------CCEECH-----HHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcCCeECH
Confidence 57788888887654 332221 12345788888888773 33221 1123567899999999998764221
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
..+.++++|++|++++|.++.. .+..+..+++|+.|++++|+++
T Consensus 123 -~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 123 -DSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -TSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred -hHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCc
Confidence 2235689999999999988764 2466788999999999999953
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.24 E-value=1.8e-08 Score=89.98 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=73.2
Q ss_pred hCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHH
Q 008051 403 NCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGM 481 (579)
Q Consensus 403 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 481 (579)
.+++|+.|+++++. ++.... ..+..+++|+.|+++++ ++.. .......+++|+.|++++|.++....
T Consensus 54 ~l~~L~~L~Ls~N~------i~~~~~-----~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQ------ISELAP-----DAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp TCTTCCEEECCSSC------CCEECT-----TTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCEEECCCCc------CCCcCH-----HHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCH
Confidence 46677777777654 332111 11345678888888773 3321 11123467899999999998764222
Q ss_pred HHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 482 QCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 482 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
..+..+++|+.|++++|.++.. ....+..+++|+.|++++|++
T Consensus 122 -~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 122 -DAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCE
T ss_pred -HHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCc
Confidence 2335689999999999988764 234577889999999999995
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.23 E-value=2.7e-07 Score=82.84 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=54.6
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++|++|+++++.++......+. .+++|++|+++++ .++... ...+..+++|++|++++|.++......+ ..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~----~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVF----DRLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCT
T ss_pred CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCCcCCccChhHh----Ccch
Confidence 4555555555554432111121 4455555555554 232210 1122345555555555555443322111 2344
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHHHH-HHHhhCCCCeeeccc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQLQ-KLLVLAPQLVDLGTG 251 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~ 251 (579)
+|++|+++++. +. .++..+..+++|++|+++++. +..++ ..+..+++|+.|.+.
T Consensus 113 ~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 113 HLKELFMCCNK--LT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TCCEEECCSSC--CC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred hhCeEeccCCc--cc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEee
Confidence 55555555442 22 122223455555555555553 11111 233444555555544
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.17 E-value=2.7e-07 Score=81.67 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=49.1
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+++|++|+++++.++......+ ..+++|++|+++++ .++.. ....+..+++|++|++++|.++...... ...
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~ 122 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGV----FDK 122 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred ccccCcEEECCCCccCccChhhc-CCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhH----hcc
Confidence 45566666666655443211111 24556666666655 33321 1112234566666666666554332211 123
Q ss_pred CCccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCc
Q 008051 191 FTSLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKS 229 (579)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 229 (579)
+++|++|+++++. ++. .....+..+++|++|++.++
T Consensus 123 l~~L~~L~l~~N~--l~~-~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 123 LTQLKDLRLYQNQ--LKS-VPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSSC--CSC-CCTTTTTTCTTCCEEECCSC
T ss_pred CCcCCEEECCCCc--cce-eCHHHhccCCCccEEEecCC
Confidence 4556666665442 110 00111244555555555554
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.17 E-value=3.3e-07 Score=93.39 Aligned_cols=59 Identities=10% Similarity=-0.128 Sum_probs=28.9
Q ss_pred CCCCeeeeccccCCcHH-HH-HHHHcCCcCcEEeccCccChHHHHHHhccCCCCceEEEecC
Q 008051 297 ANLTFLNLSYATLGSSE-LV-KLLMHCPLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPA 356 (579)
Q Consensus 297 ~~L~~L~l~~~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 356 (579)
++|+.|++++|.++.-. +. .+....+.|+.|+++++.-.. +..-...+++|+.|+++++
T Consensus 180 ~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDN 240 (571)
T ss_dssp TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSS
T ss_pred CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCC
Confidence 67888888888754211 00 111122233778877642111 1111123677888887744
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=1.8e-07 Score=83.46 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=35.5
Q ss_pred CCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccC
Q 008051 112 YPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESF 191 (579)
Q Consensus 112 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~ 191 (579)
+++|++|+++++.++......+. .+++|++|+++++ .++.. ....+..+++|++|++++|.++......+. .+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~----~l 127 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGN-KITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQ----DL 127 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TC
T ss_pred CCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCC-cCCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcC----CC
Confidence 45555555555544332112222 4445555555554 23220 011223455555555555554433222221 33
Q ss_pred Cccceeecccc
Q 008051 192 TSLEVLNFANV 202 (579)
Q Consensus 192 ~~L~~L~l~~~ 202 (579)
++|++|+++++
T Consensus 128 ~~L~~L~L~~N 138 (220)
T 2v9t_B 128 HNLNLLSLYDN 138 (220)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECCCC
Confidence 45555555544
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.09 E-value=4.8e-07 Score=87.60 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+.++.|+|+++.++......+...+++|++|+++++ .++... ...+..+++|++|++++|.++......+ ..++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLF----SDLQ 112 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTT----TTCT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHh----CCCc
Confidence 457778888777654322222225677778887776 444311 1233467778888887777654432222 2456
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. +... .+..+..+++|+.|+++++.
T Consensus 113 ~L~~L~L~~N~--i~~~-~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 113 ALEVLLLYNNH--IVVV-DRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TCCEEECCSSC--CCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc--ccEE-CHHHhCCcccCCEEECCCCc
Confidence 67777776553 2210 01123455666666666553
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=5.9e-07 Score=85.77 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCCCeeEecCccChHHHHHHHhhCCCCeeecccc
Q 008051 218 CKSLKDLKVNKSISLEQLQKLLVLAPQLVDLGTGS 252 (579)
Q Consensus 218 ~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (579)
..+++.+.+.+.....+...+...+++|+.+++..
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 34566666666655555555556688888887753
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.03 E-value=2.7e-07 Score=82.32 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=35.5
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+++|++|+++++.++......+. .+++|++|+++++ .++.. ....+..+++|++|++++|.++......+ ..
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~ 127 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSN-RLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSF----IG 127 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSS----TT
T ss_pred cCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCC-ccCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHc----CC
Confidence 345555555555544332111122 4445555555544 22221 11122345555555555554443322211 13
Q ss_pred CCccceeecccc
Q 008051 191 FTSLEVLNFANV 202 (579)
Q Consensus 191 ~~~L~~L~l~~~ 202 (579)
+++|++|+++++
T Consensus 128 l~~L~~L~L~~N 139 (220)
T 2v70_A 128 LSSVRLLSLYDN 139 (220)
T ss_dssp CTTCSEEECTTS
T ss_pred CccCCEEECCCC
Confidence 345555555544
No 136
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.00 E-value=1.9e-06 Score=77.04 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=35.6
Q ss_pred cccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 12 TSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 12 ~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
..|++||+||+.+||+||+ ++|+++++.|||+|+.++.
T Consensus 3 ~~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred chhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 3589999999999999999 9999999999999999974
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.97 E-value=1.5e-07 Score=91.08 Aligned_cols=160 Identities=12% Similarity=0.090 Sum_probs=103.3
Q ss_pred CCCCceEEEecCCCCcchhcccchhHHHHHHHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccC
Q 008051 345 CPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVT 424 (579)
Q Consensus 345 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~ 424 (579)
.+.++.|++++.. ++......+..++++|+.|.+..+.++......+ ..+++|+.|+|+++. ++
T Consensus 38 ~~~l~~L~Ls~N~---------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~------l~ 101 (361)
T 2xot_A 38 PSYTALLDLSHNN---------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNH------LH 101 (361)
T ss_dssp CTTCSEEECCSSC---------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC------CC
T ss_pred CCCCCEEECCCCC---------CCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCc------CC
Confidence 3569999999653 3332211122258899999887777664332223 368899999998765 44
Q ss_pred CCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHH--HhCCCcCcEEEecCCCC
Q 008051 425 NEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCV--LRGCPKLRKFEIRDCPF 501 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~~ 501 (579)
..+. ..+..+++|+.|+++++ +.... ......+++|+.|+|++|.++......+ ...+++|+.|++++|.+
T Consensus 102 ~~~~-----~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 102 TLDE-----FLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EECT-----TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCH-----HHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 3221 12346799999999873 43321 1123567899999999998754221111 14579999999999988
Q ss_pred CHHHHHHHHhcCCC--CcEEEecccccC
Q 008051 502 GDAALLSGLDKCES--MRSLWMSACNVT 527 (579)
Q Consensus 502 ~~~~~~~~l~~~~~--L~~L~l~~~~i~ 527 (579)
+... ...+..++. ++.|++++|++.
T Consensus 176 ~~l~-~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLP-LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCC-HHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccC-HHHhhhccHhhcceEEecCCCcc
Confidence 7542 345666676 488999999964
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.95 E-value=1.3e-06 Score=74.88 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred CCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHH
Q 008051 404 CPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQ 482 (579)
Q Consensus 404 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 482 (579)
.++|+.|+++++. ++..+. ..+..+++|+.|+++++ ++... ......+++|+.|++++|.++... .
T Consensus 27 ~~~l~~L~l~~n~------l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~ 93 (177)
T 2o6r_A 27 PSSATRLELESNK------LQSLPH-----GVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLP-N 93 (177)
T ss_dssp CTTCSEEECCSSC------CCCCCT-----TTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred CCCCcEEEeCCCc------ccEeCH-----HHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccC-H
Confidence 3578888887654 332221 12245788999999773 33211 112246789999999999876421 2
Q ss_pred HHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 483 CVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 483 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
..+..+++|++|++++|.++.. ....+..+++|+.|++++|+++-
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred HHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeec
Confidence 2335689999999999988753 23456788999999999999653
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.91 E-value=1.1e-06 Score=76.34 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=75.0
Q ss_pred CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHH
Q 008051 405 PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQC 483 (579)
Q Consensus 405 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 483 (579)
++|+.|.++++. ++..+.+. .+..+++|+.|+++++ ++... ......+++|+.|++++|.++.... .
T Consensus 29 ~~l~~L~l~~n~------i~~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~ 96 (192)
T 1w8a_A 29 LHTTELLLNDNE------LGRISSDG----LFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISN-K 96 (192)
T ss_dssp TTCSEEECCSCC------CCSBCCSC----SGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECS-S
T ss_pred CCCCEEECCCCc------CCccCCcc----ccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCH-H
Confidence 378888887654 33322211 1346788999999773 33321 1223467899999999998764221 2
Q ss_pred HHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 484 VLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 484 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.+.++++|++|++++|.++.. .+..+..+++|+.|++++|+++
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBC
T ss_pred HhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCcc
Confidence 235679999999999988764 3456778899999999999965
No 140
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.88 E-value=7.1e-06 Score=74.53 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=36.1
Q ss_pred CcccccCchHHHHHHHHhcCChhhhh-HhhHHhHHHHHHhh
Q 008051 11 NTSEVDSVKQAITKVLALLTSHKDHN-SASLVCKDWYEAEQ 50 (579)
Q Consensus 11 ~~~~~~LP~eil~~If~~L~~~~~~~-~~s~Vcr~W~~~~~ 50 (579)
...+..||+|++..||+||+ .++++ ++++|||+|+.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhc
Confidence 35799999999999999999 89999 99999999999964
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.85 E-value=3e-06 Score=73.60 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=74.5
Q ss_pred CCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHH
Q 008051 405 PNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQC 483 (579)
Q Consensus 405 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 483 (579)
++|+.|+++++. ++.++ ..+..+++|+.|+++++ ++.... .....+++|+.|++++|.++.... .
T Consensus 31 ~~l~~L~L~~n~------i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~-~ 96 (193)
T 2wfh_A 31 RDVTELYLDGNQ------FTLVP------KELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPP-R 96 (193)
T ss_dssp TTCCEEECCSSC------CCSCC------GGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT-T
T ss_pred CCCCEEECCCCc------CchhH------HHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCH-H
Confidence 478888887654 44333 12346788999999773 333211 122467899999999998764222 2
Q ss_pred HHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEeccccc
Q 008051 484 VLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNV 526 (579)
Q Consensus 484 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 526 (579)
.+.++++|+.|++++|.++.. ....+..+++|+.|++++|++
T Consensus 97 ~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCe
Confidence 235689999999999988753 234577899999999999985
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.85 E-value=4e-06 Score=88.73 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=76.0
Q ss_pred HhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHH
Q 008051 402 RNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWG 480 (579)
Q Consensus 402 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 480 (579)
..+++|+.|+|+++. +..++.. +..+++|+.|+|+++ ++ .+..-...+++|+.|+|++|.++.
T Consensus 221 ~~l~~L~~L~Ls~n~------l~~l~~~------~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ------IFNISAN------IFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp -CCCCCCEEECTTSC------CSCCCGG------GGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSS--
T ss_pred ccCCCCcEEECCCCC------CCCCChh------hcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCc--
Confidence 367788888888755 3333221 125788999999873 44 222223567889999999998762
Q ss_pred HHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh
Q 008051 481 MQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM 528 (579)
Q Consensus 481 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 528 (579)
+...+.++++|++|+|++|.++. ++..+.++++|+.|+|++|+++.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred cChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCC
Confidence 23334667889999999998863 45557888999999999998764
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.77 E-value=3.1e-06 Score=73.49 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
+++++|+++++.++..........+++|++|+++++ .++.. .+..+..+++|++|++++|.++......+ ..++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGI-EPNAFEGASHIQELQLGENKIKEISNKMF----LGLH 102 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSS----TTCT
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCc-CHhHcCCcccCCEEECCCCcCCccCHHHh----cCCC
Confidence 378889988887654322222347788999999887 45431 13344578899999999988776554333 2567
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. ++.. .+..+..+++|++|+++++.
T Consensus 103 ~L~~L~L~~N~--l~~~-~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 103 QLKTLNLYDNQ--ISCV-MPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSSC--CCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred CCCEEECCCCc--CCee-CHHHhhcCCCCCEEEeCCCC
Confidence 88888888764 2211 11224567888888888775
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=3.2e-05 Score=79.15 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=73.1
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
..|+.|+++++.++.. ..+ ..+++|+.|+++++ .++. ++..+..+++|++|++++|.++... . ...++
T Consensus 441 ~~L~~L~Ls~n~l~~l--p~~-~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp--~----l~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVL--CHL-EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALENVD--G----VANLP 508 (567)
T ss_dssp TTCSEEECTTSCCSSC--CCG-GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCCCCG--G----GTTCS
T ss_pred cCceEEEecCCCCCCC--cCc-cccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCCCCCCCc--c----cCCCC
Confidence 3577777777766542 222 36677777777776 4542 4444556777788887777766432 1 22566
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCccChHH----HHHHHhhCCCCeeec
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSISLEQ----LQKLLVLAPQLVDLG 249 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~ 249 (579)
+|++|+++++. ++....+..+..+++|+.|+++++. +.+ ...++..+++|+.|+
T Consensus 509 ~L~~L~Ls~N~--l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 509 RLQELLLCNNR--LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCEEECCSSC--CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCcEEECCCCC--CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 77777777663 2221112334677788888887775 222 234455677777664
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.74 E-value=6.1e-06 Score=71.65 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++|++|+++++.++... .. ...+++|+.|+++++ .++... ...+..+++|++|++++|.++......+ ..++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~-~~~l~~L~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f----~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KE-LSNYKHLTLIDLSNN-RISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF----DGLK 102 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GG-GGGCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT----TTCT
T ss_pred CCCCEEECCCCcCchhH-HH-hhcccCCCEEECCCC-cCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh----CCCC
Confidence 57888888888766322 22 347788888888887 454311 2234578888999988888776553333 2567
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. ++. .....+..+++|+.|++.++.
T Consensus 103 ~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGND--ISV-VPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSC--CCB-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC--CCe-eChhhhhcCccccEEEeCCCC
Confidence 88888888764 221 011124567888888888775
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.72 E-value=6.5e-06 Score=70.48 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=62.3
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCC
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFT 192 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~ 192 (579)
++|++|+++++.++......+ ..+++|++|+++++ .++.. ....+..+++|++|++++|.++......+ ..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVF----DKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCT
T ss_pred CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCCccccCHHHh----hCCc
Confidence 567777777776553221122 25677888888776 44421 11223467788888888877665433222 2456
Q ss_pred ccceeecccccCCCCHHHHHHHHHhCCCCCeeEecCcc
Q 008051 193 SLEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKSI 230 (579)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 230 (579)
+|++|+++++. ++. .....+..+++|++|+++++.
T Consensus 101 ~L~~L~l~~N~--l~~-~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTNQ--LKS-VPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC--CSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCCc--ceE-eCHHHhcCCcccCEEEecCCC
Confidence 77778777663 221 111223556777788777765
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.69 E-value=2.5e-05 Score=70.74 Aligned_cols=90 Identities=12% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHHHhcccCcCeeeccccCCChH-HHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccCh-----hH
Q 008051 457 EYIGQYAKNLELLSVAFAGSSDW-GMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTM-----DG 530 (579)
Q Consensus 457 ~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-----~~ 530 (579)
..+...+|+|+.|+|++|.++.. ++...+..+++|+.|+|++|.+.+..-...+..+ +|+.|++.+|+++. .+
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 33446789999999999998542 3344556789999999999988764222333333 99999999999864 23
Q ss_pred -HHHHhhcCCCceEEEeccc
Q 008051 531 -CKLLASKKPRLNVEVIKEA 549 (579)
Q Consensus 531 -~~~l~~~~p~l~~~~~~~~ 549 (579)
...+...+|++ ..+++.
T Consensus 242 y~~~il~~~P~L--~~LDg~ 259 (267)
T 3rw6_A 242 YISAIRERFPKL--LRLDGH 259 (267)
T ss_dssp HHHHHHHHCTTC--CEESSC
T ss_pred HHHHHHHHCccc--CeECCc
Confidence 34566788988 455554
No 148
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.65 E-value=3e-07 Score=88.66 Aligned_cols=203 Identities=14% Similarity=0.067 Sum_probs=99.7
Q ss_pred CCCCCeeeeccccCCcHHHHHHHHcCCcCcEEeccCccChHHHH-HHhccCCCCceEEEecCCCCcchhcccchhHHHHH
Q 008051 296 CANLTFLNLSYATLGSSELVKLLMHCPLLKRLWVLDTVEDRGLE-AVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLA 374 (579)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 374 (579)
.+++++|++++|.++.-.- ..+..+++|+.|+++++.....+. .....+++++++.+..+..... +...
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-----l~~~---- 98 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-----INPE---- 98 (350)
T ss_dssp CTTCSEEEEESCCCSEECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-----ECTT----
T ss_pred CCCCCEEEccCCcCCCcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-----cCch----
Confidence 3679999999998643110 123578899999998752211111 1224566666655443221111 1111
Q ss_pred HHcCCCcchhhhhcCcCCCHHHHHHHHHhCCCCceEEeeccCCCCCCccCCCccchHHHHHHhcCcccceeecccc-cCh
Q 008051 375 VSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGL-LTD 453 (579)
Q Consensus 375 l~~~~~~L~~L~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~ 453 (579)
...++++|++|.+..+.+........ ....++..|.+..+. .+...+.. . +......++.|+++++ ++.
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~-----~i~~l~~~-~---f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNI-----NIHTIERN-S---FVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCT-----TCCEECTT-S---STTSBSSCEEEECCSSCCCE
T ss_pred hhhhccccccccccccccccCCchhh-cccchhhhhhhcccc-----cccccccc-c---hhhcchhhhhhccccccccC
Confidence 12346777777665554432110000 122345555554422 23322211 0 0111245777777662 332
Q ss_pred HHHHHHHhcccCcCeeeccccC-CChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 454 LTFEYIGQYAKNLELLSVAFAG-SSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 454 ~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
- ..-....++|+.|.+.+++ ++... ...+.++++|++|++++|.++.. +. ..+.+|+.|.+.++.
T Consensus 169 i--~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~l--p~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 169 I--HNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSL--PS--YGLENLKKLRARSTY 234 (350)
T ss_dssp E--CTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCC--CS--SSCTTCCEEECTTCT
T ss_pred C--ChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCcc--Ch--hhhccchHhhhccCC
Confidence 1 1111134567888887543 43211 11235578888888888877642 11 235567777666654
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.53 E-value=4.7e-07 Score=87.27 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=10.0
Q ss_pred cCCCCCeeeeccccC
Q 008051 295 VCANLTFLNLSYATL 309 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~ 309 (579)
.+++|+.|++++|.+
T Consensus 200 ~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 200 GASGPVILDISRTRI 214 (350)
T ss_dssp TEECCSEEECTTSCC
T ss_pred cCcccchhhcCCCCc
Confidence 456677777777664
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.53 E-value=2.7e-05 Score=82.47 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=11.3
Q ss_pred cCCCCCeeeeccccCCc
Q 008051 295 VCANLTFLNLSYATLGS 311 (579)
Q Consensus 295 ~~~~L~~L~l~~~~~~~ 311 (579)
.+++|+.|+|++|.+..
T Consensus 314 ~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SCTTCCCEECTTSCCCS
T ss_pred cCCCccEEeCCCCccCC
Confidence 45677777777776553
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.50 E-value=1.2e-05 Score=68.43 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=59.6
Q ss_pred cccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcE
Q 008051 440 TNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRS 518 (579)
Q Consensus 440 ~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 518 (579)
++|+.|+++++ +.... ......+++|+.|++++|.++... ...+..+++|+.|++++|.+... ....+..+++|+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence 57777887762 33211 112346788999999999876421 12235689999999999988753 2345788999999
Q ss_pred EEecccccC
Q 008051 519 LWMSACNVT 527 (579)
Q Consensus 519 L~l~~~~i~ 527 (579)
|++++|++.
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999999964
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.47 E-value=1.3e-05 Score=67.88 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=59.5
Q ss_pred cccceeecccc-cChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcE
Q 008051 440 TNLQRLSLSGL-LTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRS 518 (579)
Q Consensus 440 ~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 518 (579)
++|+.|+++++ ++... ......+++|+.|++++|.++... ...+.++++|++|++++|.++.. ....+.++++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 56777777662 33211 112245788999999999875321 12236689999999999988753 2345788999999
Q ss_pred EEecccccC
Q 008051 519 LWMSACNVT 527 (579)
Q Consensus 519 L~l~~~~i~ 527 (579)
|++++|+++
T Consensus 107 L~L~~N~~~ 115 (170)
T 3g39_A 107 IWLLNNPWD 115 (170)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCCC
Confidence 999999964
No 153
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.44 E-value=4.5e-05 Score=76.58 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 10 QNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 10 ~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
..+.|..||+|++.+||+||+ .+++.++++|||+|+.++.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHc
Confidence 458899999999999999999 8999999999999999864
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.33 E-value=3.1e-06 Score=82.96 Aligned_cols=35 Identities=6% Similarity=0.210 Sum_probs=16.0
Q ss_pred hcCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeec
Q 008051 110 DRYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLS 146 (579)
Q Consensus 110 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~ 146 (579)
..|.+|+++.|... ++..+-.++. .|.+|+.+++.
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~-~c~~L~~i~lp 102 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFE-NCSKLEIINIP 102 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTT-TCTTCCEECCC
T ss_pred hCCCCceEEEeCCC-ccCcchhHhh-CCCCCcEEEeC
Confidence 34566666666432 2211111222 45566666664
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=0.00017 Score=65.20 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=36.6
Q ss_pred hcccCcCeeeccccCCChH-HHHHHHhCCCcCcEEEecCCCCCH------HHHHHHHhcCCCCcEEE
Q 008051 461 QYAKNLELLSVAFAGSSDW-GMQCVLRGCPKLRKFEIRDCPFGD------AALLSGLDKCESMRSLW 520 (579)
Q Consensus 461 ~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~~------~~~~~~l~~~~~L~~L~ 520 (579)
..+++|+.|+|++|.+++. .+..+ ..+ +|++|++++|++.. .....++..+|+|+.|+
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3466777777777776543 22221 223 78888888888764 22345677888888875
No 156
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.24 E-value=0.00011 Score=72.97 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCcccccCchH----HHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 10 QNTSEVDSVKQ----AITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 10 ~~~~~~~LP~e----il~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
..+.+..||+| ++.+||+||+ .+++.++++|||+|+.++.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 45889999999 9999999999 8999999999999999963
No 157
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.23 E-value=0.00013 Score=72.74 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=38.4
Q ss_pred cCCCcccccCchHHHHHHHHhcCChhhhhHhhHHhHHHHHHhh
Q 008051 8 KDQNTSEVDSVKQAITKVLALLTSHKDHNSASLVCKDWYEAEQ 50 (579)
Q Consensus 8 ~~~~~~~~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 50 (579)
....+.+..||+|++.+||+||+ .+++.+++.|||+|+.++.
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred cccCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 44568899999999999999999 9999999999999999964
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.14 E-value=0.00023 Score=60.10 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccc
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIED 178 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~ 178 (579)
++|++|+++++.++...-..+. .+++|++|+++++ .++.. ....+..+++|++|++++|.++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCCccCE
Confidence 4566666666654432212222 4556666666655 33321 11222345666666666665443
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.11 E-value=0.00026 Score=60.01 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=30.5
Q ss_pred CCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHH-HHHhhCCCCCeEeccCCCccc
Q 008051 113 PSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLA-AIATNCKNLTELDIQENGIED 178 (579)
Q Consensus 113 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~ 178 (579)
++|++|+++++.++......+. .+++|+.|+|+++ .++. ++ ..+..+++|++|++++|.++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSN-KLTA--IPTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCC-CCCc--cChhHhCCcchhhEEECCCCccce
Confidence 4566666666654432211222 4556666666655 3332 11 122345666666666655443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.10 E-value=8.8e-06 Score=79.71 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=31.1
Q ss_pred hCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCccceeecc
Q 008051 136 SFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTSLEVLNFA 200 (579)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~L~~L~l~ 200 (579)
.|.+|+++.+.. .++..+ ...+.+|++|+.+++..+ ++..+... ...+.+|+.+.+.
T Consensus 69 ~c~~L~~i~lp~--~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~a----F~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVREIG-EFAFENCSKLEIINIPDS-VKMIGRCT----FSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCT--TCCEEC-TTTTTTCTTCCEECCCTT-CCEECTTT----TTTCTTCCCCCCC
T ss_pred CCCCceEEEeCC--CccCcc-hhHhhCCCCCcEEEeCCC-ceEccchh----hcccccchhhccc
Confidence 667888888864 233311 123457888888888553 22222211 2255666665554
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.53 E-value=0.00031 Score=67.30 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=33.9
Q ss_pred cccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccccC
Q 008051 462 YAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVT 527 (579)
Q Consensus 462 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 527 (579)
.+++|+.|+|++|.++... ...+.++++|++|+|++|.++.. ....+..++ |+.|+|.+|++.
T Consensus 54 ~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 54 GLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCEEECCSSCCC
T ss_pred cccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceEEEeeCCCcc
Confidence 4566666666666654311 11234566677777777766532 112333333 677777766643
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.52 E-value=0.00032 Score=68.38 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccccCCc
Q 008051 114 SLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPESFTS 193 (579)
Q Consensus 114 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~~~~ 193 (579)
+|+.+.+..+ ++...-.++. . .+|+++.+.. .++..+ ...+.+|++|+.+++..+.++..+...+. +.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~-~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~ 204 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFF-N-STVQEIVFPS--TLEQLK-EDIFYYCYNLKKADLSKTKITKLPASTFV-----YAG 204 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTT-T-CCCCEEECCT--TCCEEC-SSTTTTCTTCCEEECTTSCCSEECTTTTT-----TCC
T ss_pred CccEEEeCCC-ccEECHHhcC-C-CCceEEEeCC--CccEeh-HHHhhCcccCCeeecCCCcceEechhhEe-----ecc
Confidence 5777777654 2221112222 2 3577777764 222211 12345788888888877766555443332 467
Q ss_pred cceeecccccCCCCHHHHHHHHHhCCCCCeeEecCc
Q 008051 194 LEVLNFANVNSEVDFDALEKLVSRCKSLKDLKVNKS 229 (579)
Q Consensus 194 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 229 (579)
|+.+.+...-..+... .+.+|++|+.+.+...
T Consensus 205 L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 205 IEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CSEEECCTTCCEECTT----TTTTCTTCCCEECCTT
T ss_pred cCEEEeCCchheehhh----HhhCCCCCCEEecCCC
Confidence 7777776432122222 2356777777777643
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.13 E-value=0.001 Score=64.97 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=47.3
Q ss_pred hcCcccceeecccccChHHHHHHHhcccCcCeeeccccC--CChHHHHHHHhCCCcCcEEEecCC--CCCHHHHHHHHhc
Q 008051 437 RTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAG--SSDWGMQCVLRGCPKLRKFEIRDC--PFGDAALLSGLDK 512 (579)
Q Consensus 437 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~ 512 (579)
.+|++|+.+.+...+..-+ ......|++|+.+.|..+- |.+. .+.+|.+|+++.|..+ .+.+ ..+.+
T Consensus 285 ~~c~~L~~i~l~~~i~~I~-~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~----~aF~~ 355 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELP-ESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPE----SAFSN 355 (394)
T ss_dssp TTCTTCCEEECCTTCCEEC-TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCG----GGGTT
T ss_pred ccccccccccCCCcccccC-ceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhH----hHhhC
Confidence 3567777777755211111 0122457778888876541 2321 2356788888888655 2333 45677
Q ss_pred CCCCcEEEecccc
Q 008051 513 CESMRSLWMSACN 525 (579)
Q Consensus 513 ~~~L~~L~l~~~~ 525 (579)
|++|+.+++.++.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 8888888887764
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.92 E-value=0.0017 Score=63.15 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=41.1
Q ss_pred HhcCcccccccCc---cccccchHhhhhhcCCCCCeeeecccc--CCcHHHHHHHHcCCcCcEEeccCccChHHHHHHhc
Q 008051 269 FNKCKNIHKLSGL---WQATALYFPALSPVCANLTFLNLSYAT--LGSSELVKLLMHCPLLKRLWVLDTVEDRGLEAVGS 343 (579)
Q Consensus 269 ~~~~~~L~~L~~~---~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 343 (579)
+.+|++|+.+..- ..++.. ....|++|+.+.+..+- +.... +..| +|+.+.+.+............
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~~l~~I~~~a----F~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQG----LLGGNRKVTQLTIPANVTQINFSA----FNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTT----TTTTCCSCCEEEECTTCCEECTTS----SSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred hhCCccCCeEEeCCceEEEhhh----hhcCCCCccEEEECccccEEcHHh----CCCC-CCCEEEEcCCCCccccccccc
Confidence 4567777766521 222222 23467889999886543 33222 3467 899999876321111011123
Q ss_pred cC-CCCceEEEe
Q 008051 344 SC-PLLEELRVF 354 (579)
Q Consensus 344 ~~-~~L~~L~l~ 354 (579)
.+ .+++.|.+.
T Consensus 367 ~~~~~l~~l~vp 378 (401)
T 4fdw_A 367 GFPDDITVIRVP 378 (401)
T ss_dssp CSCTTCCEEEEC
T ss_pred CCCCCccEEEeC
Confidence 34 367777776
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.86 E-value=0.0037 Score=59.72 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=49.2
Q ss_pred cCCCCCeeeecC-cccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCcccccccccccccc
Q 008051 111 RYPSLEELRLKR-MSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPE 189 (579)
Q Consensus 111 ~~~~L~~L~l~~-~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 189 (579)
..++|++|+|++ +.++...-..+. .+++|+.|+|+++ .++.. .+..+.++++|++|+|++|.++......+.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---- 101 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKS-GLRFV-APDAFHFTPRLSRLNLSFNALESLSWKTVQ---- 101 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSS-CCCEE-CTTGGGSCSCCCEEECCSSCCSCCCSTTTC----
T ss_pred CCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCC-cccee-CHHHhcCCcCCCEEeCCCCccceeCHHHcc----
Confidence 456788888875 665543222232 6677888888877 45431 123345678888888888876654432221
Q ss_pred cCCccceeecccc
Q 008051 190 SFTSLEVLNFANV 202 (579)
Q Consensus 190 ~~~~L~~L~l~~~ 202 (579)
.. .|+.|++.++
T Consensus 102 ~~-~L~~l~l~~N 113 (347)
T 2ifg_A 102 GL-SLQELVLSGN 113 (347)
T ss_dssp SC-CCCEEECCSS
T ss_pred cC-CceEEEeeCC
Confidence 11 2667776655
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.64 E-value=0.43 Score=37.51 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=19.5
Q ss_pred cCcEEEecCCCCCHHHHHHHHhcCCCCcEEEecccc
Q 008051 490 KLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACN 525 (579)
Q Consensus 490 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 525 (579)
+|++|+|++|.++.. ....+..+++|+.|+|.+|+
T Consensus 32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCC
Confidence 466666666655432 12344556666666666666
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.56 E-value=0.48 Score=45.79 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=5.9
Q ss_pred HhCCCCCeeEec
Q 008051 216 SRCKSLKDLKVN 227 (579)
Q Consensus 216 ~~~~~L~~L~l~ 227 (579)
.+|.+|+.+.+.
T Consensus 331 ~~C~~L~~i~ip 342 (394)
T 4gt6_A 331 AGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEEEC
T ss_pred hCCCCCCEEEEC
Confidence 344555555553
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=79.00 E-value=0.3 Score=46.93 Aligned_cols=81 Identities=14% Similarity=0.284 Sum_probs=45.7
Q ss_pred hcCcccceeecccccChHHHHHHHhcccCcCeeeccccCCChHHHHHHHhCCCcCcEEEecCC--CCCHHHHHHHHhcCC
Q 008051 437 RTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDC--PFGDAALLSGLDKCE 514 (579)
Q Consensus 437 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~ 514 (579)
..|.+|+.+.+...+...+. .....|++|+.+.+.++.++.-+- ..+.+|.+|+.+.|..+ .|.+ ..+.+|+
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPY-LLCSGCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTALKTIQV----YAFKNCK 333 (379)
T ss_dssp TTCTTCCEEEECCCCSEECT-TTTTTCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTTCCEECT----TTTTTCT
T ss_pred ceeehhccccccccceeccc-cccccccccccccccccccceehh-hhhcCCCCCCEEEcCccccEEHH----HHhhCCC
Confidence 34667777776542221111 122457778888887665432111 12356788888888654 2332 3567788
Q ss_pred CCcEEEecc
Q 008051 515 SMRSLWMSA 523 (579)
Q Consensus 515 ~L~~L~l~~ 523 (579)
+|+.+.+..
T Consensus 334 ~L~~i~ip~ 342 (379)
T 4h09_A 334 ALSTISYPK 342 (379)
T ss_dssp TCCCCCCCT
T ss_pred CCCEEEECC
Confidence 888887744
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=71.06 E-value=0.97 Score=43.30 Aligned_cols=125 Identities=9% Similarity=0.169 Sum_probs=60.6
Q ss_pred cCCCCCeeeecCcccChHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHHhhCCCCCeEeccCCCccccccccccccccc
Q 008051 111 RYPSLEELRLKRMSVSDESLEFLAVSFPNFKVLSLSSCDGFSTDGLAAIATNCKNLTELDIQENGIEDISGSWLSCFPES 190 (579)
Q Consensus 111 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~~ 190 (579)
.+.+|+.+.+.... ....-..+ ..+..|+.+.+... ++..+ ...+.+|.+|+.+.+... +...+.. ....
T Consensus 215 ~~~~l~~i~~~~~~-~~i~~~~f-~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~ 284 (379)
T 4h09_A 215 YGKNLKKITITSGV-TTLGDGAF-YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAK-VKTVPYL----LCSG 284 (379)
T ss_dssp TCSSCSEEECCTTC-CEECTTTT-TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCC-CSEECTT----TTTT
T ss_pred cccccceeeeccce-eEEccccc-cCCccceEEEcCCC--ccEeC-ccccceeehhcccccccc-ceecccc----cccc
Confidence 45667777665431 11111111 25567777777643 22211 123346777777776442 2222211 1235
Q ss_pred CCccceeeccccc-CCCCHHHHHHHHHhCCCCCeeEecCccChHHH-HHHHhhCCCCeeeccc
Q 008051 191 FTSLEVLNFANVN-SEVDFDALEKLVSRCKSLKDLKVNKSISLEQL-QKLLVLAPQLVDLGTG 251 (579)
Q Consensus 191 ~~~L~~L~l~~~~-~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~ 251 (579)
|.+|+.+.+.+.. ..+... .+.+|.+|+.+.+.... ..+ ...+..|.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTAL--KTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccceehhh----hhcCCCCCCEEEcCccc--cEEHHHHhhCCCCCCEEEEC
Confidence 6777777775431 112222 23567777777775432 111 1235567777777654
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.64 E-value=7.4 Score=30.27 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=6.9
Q ss_pred CCCeEeccCCCccc
Q 008051 165 NLTELDIQENGIED 178 (579)
Q Consensus 165 ~L~~L~l~~~~i~~ 178 (579)
+|++|+|++|.|+.
T Consensus 32 ~l~~L~Ls~N~l~~ 45 (130)
T 3rfe_A 32 DTTELVLTGNNLTA 45 (130)
T ss_dssp TCSEEECTTSCCSS
T ss_pred CCCEEECCCCcCCc
Confidence 45555555554443
Done!