Query 008053
Match_columns 579
No_of_seqs 141 out of 231
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 18:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03164 Mon1: Trafficking pro 100.0 9E-122 2E-126 984.4 49.5 408 135-577 2-415 (415)
2 KOG0997 Uncharacterized conser 100.0 9E-116 2E-120 923.7 46.4 413 132-577 105-523 (523)
3 PF01217 Clat_adaptor_s: Clath 96.2 0.084 1.8E-06 49.0 12.0 82 145-229 3-85 (141)
4 PF08217 DUF1712: Fungal domai 94.6 0.39 8.5E-06 55.4 13.0 68 166-233 34-111 (604)
5 KOG0937 Adaptor complexes medi 80.3 15 0.00033 40.7 11.0 76 145-223 2-80 (424)
6 PF03259 Robl_LC7: Roadblock/L 78.0 28 0.0006 29.0 9.8 67 145-211 16-90 (91)
7 PF04099 Sybindin: Sybindin-li 76.7 68 0.0015 30.2 15.1 71 146-216 3-96 (142)
8 KOG3368 Transport protein part 74.0 46 0.001 31.6 10.7 84 147-232 6-104 (140)
9 KOG3343 Vesicle coat complex C 67.9 87 0.0019 30.8 11.4 120 145-278 10-140 (175)
10 PF13774 Longin: Regulated-SNA 61.3 63 0.0014 27.1 8.4 58 177-234 5-62 (83)
11 KOG2635 Medium subunit of clat 50.1 1.4E+02 0.003 33.8 10.6 116 147-263 6-126 (512)
12 PLN02673 quinolinate synthetas 41.3 38 0.00082 40.0 5.0 29 151-179 140-168 (724)
13 COG5122 TRS23 Transport protei 37.3 2.9E+02 0.0064 25.8 9.0 84 145-230 4-100 (134)
14 COG4127 Uncharacterized conser 36.8 65 0.0014 34.3 5.4 66 493-565 39-120 (318)
15 KOG0936 Clathrin adaptor compl 29.4 3.4E+02 0.0073 26.7 8.4 109 145-265 3-122 (182)
16 PRK11778 putative inner membra 24.3 41 0.00089 36.4 1.6 80 152-238 152-253 (330)
No 1
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=100.00 E-value=9.2e-122 Score=984.39 Aligned_cols=408 Identities=46% Similarity=0.796 Sum_probs=388.7
Q ss_pred ccchhhhccCceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCC
Q 008053 135 DASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCT 214 (579)
Q Consensus 135 ~~~~~w~~~~Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~ 214 (579)
+.+++|++|+|||||||+||||||||||||++++++||+||||||||++++|+|++|.+|+++|||+.|+||||||||++
T Consensus 2 ~~~~~~~~~~kh~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~ 81 (415)
T PF03164_consen 2 VHSEEWRKHKKHFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKT 81 (415)
T ss_pred cchHHHHhcCCeEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhH-HHHHHhhhCCCCCcccCCCChHHHHHHHHHhcCCCh-hhhhcccccccCChHHHH
Q 008053 215 EEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYATRQ 292 (579)
Q Consensus 215 ~Es~~~L~~QL~~Ly~qilSiLT~-~l~r~f~krpNyDLRrlL~gtd~~l~~Li~~~~~~p-~~~l~a~~cLpL~~~~R~ 292 (579)
+|++++|++||+|||.||+|+||+ +|+|+|++||||||||+|+|||+++++++++++++| +++++|++|+||+++.|+
T Consensus 82 ~e~~~~l~~qL~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~R~ 161 (415)
T PF03164_consen 82 GESESQLRKQLDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRFLDSLLDSMNRSPPSFLLNALECLPLRPSIRD 161 (415)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHHHHHHHHHhcCChHHHHhhcceEEECCHHHHH
Confidence 999999999999999999999997 899999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHhhh--ccCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHhhhcccccCCCCccccccccCCCCCceEEEEE
Q 008053 293 AAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYV 370 (579)
Q Consensus 293 ~i~~iL~~--~~~~~lLfglL~~~~klVs~vrpk~~~Lhp~DL~LL~N~V~ss~Sfk~~EsW~PICLP~FN~~GFLyaYV 370 (579)
+|+++|.+ .+.+++|||+|+++||||+++|||+|+|||.||+||+|+|.++.+++++|+|+|||||+||++|||||||
T Consensus 162 ~i~~~l~~~~~~~~~llf~lL~~~~klv~~~~~k~~~L~~~Dl~lL~n~v~~~~~~~~~E~W~PICLP~FN~~GFLyayv 241 (415)
T PF03164_consen 162 KITSILLSCLNKRKDLLFGLLFANNKLVSVVRPKKHSLHPSDLHLLFNLVRSSSSFKSGESWIPICLPKFNPNGFLYAYV 241 (415)
T ss_pred HHHHHHHHhccCCCCcEEEEEEECCEEEEEEccCCCcCChHHHHHHHHHHhhccccCCCCceeccCCcccCCCceEEEEe
Confidence 99999998 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC--CeEEEEEcCCcchhhHhHHHHHHHHHHHHhcccHHHHHHHHHhcCcccccCCCCCCCCCCCCccccccccccC
Q 008053 371 HYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQ 448 (579)
Q Consensus 371 ~yl~~--~~~LVLlSt~~daFf~L~~~r~~I~~~L~~~~~l~~i~~sl~~~~~~v~dip~~~~~~s~~~~~~~~~~~~~~ 448 (579)
+||++ ++||||||+++|+||+|++++++|+++|.+.|+++++.+++..+.
T Consensus 242 ~~l~~~~~~~lvLiS~~~~~F~~l~~~~~~i~~~L~~~~~~~~l~~~~~~~~---------------------------- 293 (415)
T PF03164_consen 242 SYLDEDSPVCLVLISTDKDAFFELSEAKDRIIDKLEESGCLEALISALSNSS---------------------------- 293 (415)
T ss_pred eeccCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhc----------------------------
Confidence 99999 899999999999999999999999999999999999988775420
Q ss_pred CCccccccccccCCCCceeEEEEeecCCCeEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCceEEEEecCCeEE
Q 008053 449 SPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYVL 528 (579)
Q Consensus 449 ~P~~~~~~~~~i~~p~~L~HFIYKsk~~~Q~v~p~~~~p~~~~~~~krL~~~Yq~L~~~~h~~~~~~~k~~y~~~~~~~l 528 (579)
.|....+ |+ |+|||||||+|+++||+||+|++||.+..+++||+++|++||++||+.+ .+.|+.|++++++++
T Consensus 294 ---~~~~~~i--g~-p~L~HFiYKsk~~~Q~~~p~~~~~~~~~~~~~rL~~~Y~~L~~~~h~~~-~~~k~~y~~~~~e~~ 366 (415)
T PF03164_consen 294 ---SYSISDI--GI-PELRHFIYKSKSNNQFVSPEFSPPYNSPDERKRLFRLYQKLHSSMHSSS-RPLKLIYRWTEKETG 366 (415)
T ss_pred ---CCCcccC--CC-CceEEEEEEecCCCceeCCCCCCCCCChHHHHHHHHHHHHHHHHHhCCC-CCeeEEEEecCCcEE
Confidence 0111112 23 5899999999999999999999999999999999999999999999853 578999999999999
Q ss_pred EEEecCCeeEEEEeCCCccHHHHHHHHHHHHHHhhhccCceEecCCCCC
Q 008053 529 LCWVTQDFELYAAFDPLADKAVAIKTCNRVCQWVKDVENEIFLQGASPF 577 (579)
Q Consensus 529 l~WvT~~FELY~~f~pl~~k~~ai~~~nkL~kWikk~E~rLFi~~~~~f 577 (579)
++|+|++|||||+|||+++|+++++.||+|+|||||+|+||||++|++|
T Consensus 367 l~w~T~~fELY~~~~plv~k~~~i~~~~~likWikk~e~rLFI~~~~~F 415 (415)
T PF03164_consen 367 LAWVTSDFELYCVFNPLVTKSAAIASANKLIKWIKKEENRLFITNGPTF 415 (415)
T ss_pred EEEEcCCeEEEEEeCCcCCHHHHHHHHHHHHHHHHhhcCeEEecCCCcC
Confidence 9999999999999999999999999999999999999999999999998
No 2
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]
Probab=100.00 E-value=8.8e-116 Score=923.72 Aligned_cols=413 Identities=38% Similarity=0.668 Sum_probs=387.9
Q ss_pred CccccchhhhccCceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEE
Q 008053 132 DEDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCI 211 (579)
Q Consensus 132 ~ed~~~~~w~~~~Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaV 211 (579)
++.+..++|+.++|||||||+||||||||||+|++++++||+|||+|||||.+++.++.|.++++++|||.|+||+|||+
T Consensus 105 ~~~d~~e~~r~q~khifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~~~~~i~si~a~g~k~vfl~kspl~LvA~ 184 (523)
T KOG0997|consen 105 DLNDLIEDWRLQKKHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQVSGLAITSIHAFGNKLVFLQKSPLLLVAV 184 (523)
T ss_pred ccchhhHHHHhCCceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhhCCceEEEEEecCceEEEEecCcEEEEEE
Confidence 34444589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHHHHHHhhH-HHHHHhhhCCCCCcccCCCChHHHHHHHHHhcCCCh-hhhhcccccccCChH
Q 008053 212 SCTEEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYA 289 (579)
Q Consensus 212 S~~~Es~~~L~~QL~~Ly~qilSiLT~-~l~r~f~krpNyDLRrlL~gtd~~l~~Li~~~~~~p-~~~l~a~~cLpL~~~ 289 (579)
|+++++.+||++||++||.||+|+||+ ++.++|+||+||||||||+|+|+++++++..|+.+| .+++||++||||+++
T Consensus 185 s~t~~Sa~qL~~qL~~ly~QIlS~LT~~ql~~if~~r~NfDLRrLL~gser~~~~ll~~~~~~~~~lllnsi~~lPl~~s 264 (523)
T KOG0997|consen 185 SRTSQSAAQLLQQLLLLYCQILSILTASQLQRIFNKRQNFDLRRLLSGSERLLDNLLDSMNRDPLVLLLNSIRCLPLNSS 264 (523)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhcccHHHHHHHHHHHhhCcchhhhccceeccCChh
Confidence 999999999999999999999999996 899999999999999999999999999999999998 677799999999999
Q ss_pred HHHHHHHHhhh--ccCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHhhhcccccCCCCccccccccCCCCCceEE
Q 008053 290 TRQAAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLY 367 (579)
Q Consensus 290 ~R~~i~~iL~~--~~~~~lLfglL~~~~klVs~vrpk~~~Lhp~DL~LL~N~V~ss~Sfk~~EsW~PICLP~FN~~GFLy 367 (579)
.|+++.+.|+. ++++++|||+|+++|||||+||+|||.|||.||+||||+|.++++|+++|.|+|||||+||++||+|
T Consensus 265 ~Rd~Ls~~l~~~l~~~~~Llf~iliarnkLva~vr~kk~~LHp~DL~Llfnlvs~~~~~~s~E~WvPIClPkFN~~Gffy 344 (523)
T KOG0997|consen 265 FRDQLSALLLSCLAKAKGLLFGILIARNKLVAMVRAKKYLLHPADLHLLFNLVSRQSLFDSSENWVPICLPKFNPDGFFY 344 (523)
T ss_pred HHHHHHHHHHHhhccCCccEEEEEEeCCeeEEEEeccccccChhhHHHHHHHhcccccccccccccceeccccCCCceEE
Confidence 99999999988 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC--CeEEEEEcCCcchhhHhHHHHHHHHHHHHhcccHHHHHHHHHhcCcccccCCCCCCCCCCCCcccccccc
Q 008053 368 AYVHYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRI 445 (579)
Q Consensus 368 aYV~yl~~--~~~LVLlSt~~daFf~L~~~r~~I~~~L~~~~~l~~i~~sl~~~~~~v~dip~~~~~~s~~~~~~~~~~~ 445 (579)
|||+||++ .+||||+|+++|+||.|++||++|+++|.+.|++.++..+... . +++.
T Consensus 345 ayisyL~~d~~vcllLls~~rdaFf~l~~~r~~i~~kL~~~~~l~~l~~~~~~---~--------------~~~~----- 402 (523)
T KOG0997|consen 345 AYISYLCKDDPVCLLLLSVQRDAFFALKSVRRKIAEKLEKHGALKALNEAAEF---D--------------PNPY----- 402 (523)
T ss_pred EEEeecCCCCCeEEEEEecchhHHHHHHHHHHHHHHHHHhcchHHHHHHHhcC---C--------------Cccc-----
Confidence 99999985 5899999999999999999999999999999999998876431 0 0000
Q ss_pred ccCCCccccccccccCCCCceeEEEEeecCCCeEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCceEEEEecCC
Q 008053 446 LTQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDEN 525 (579)
Q Consensus 446 ~~~~P~~~~~~~~~i~~p~~L~HFIYKsk~~~Q~v~p~~~~p~~~~~~~krL~~~Yq~L~~~~h~~~~~~~k~~y~~~~~ 525 (579)
+. ..++|.|.||||+||+|+..||+||+++.||.+..+|+||...|+++|+++|+++ .|+|+.|.+.++
T Consensus 403 -------~~---~q~~g~p~l~HFLy~~ks~~q~~sp~le~p~~~~~erq~L~~~y~rl~~~l~s~s-~~l~~i~~~~e~ 471 (523)
T KOG0997|consen 403 -------YY---VQNVGSPCLRHFLYKSKSSAQFTSPGLEAPYKSETERQRLYAIYARLHSRLHSKS-RPLRTIYTVKEK 471 (523)
T ss_pred -------ee---eecCCCccchhheecccccchhcCccccCCcCChHHHHHHHHHHHHHhhhhhccC-CcceEEEEecCc
Confidence 01 1223347899999999999999999999999999999999999999999999885 689999999999
Q ss_pred eEEEEEecCCeeEEEEeCCCccHHHHHHHHHHHHHHhhhccCceEecCCCCC
Q 008053 526 YVLLCWVTQDFELYAAFDPLADKAVAIKTCNRVCQWVKDVENEIFLQGASPF 577 (579)
Q Consensus 526 ~~ll~WvT~~FELY~~f~pl~~k~~ai~~~nkL~kWikk~E~rLFi~~~~~f 577 (579)
+++|+|+|+.|||||+++|++||+.||++++||+|||||||+||||.++++|
T Consensus 472 e~llaWvT~~FeLY~i~~p~vtka~ai~~v~KllrWikkeEdRlFI~~~~sf 523 (523)
T KOG0997|consen 472 EVLLAWVTGTFELYCIFNPLVTKALAIKVVNKLLRWIKKEEDRLFIRNPASF 523 (523)
T ss_pred eEEEEEeccceEEEEecccchhHHHHHHHHHHHHHHHHhhhceEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999987
No 3
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=96.16 E-value=0.084 Score=49.02 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=55.8
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcC-CCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENG-KDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRG 223 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~-~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~ 223 (579)
+-+||++..||++++||=+......-......+....... .+.-..+..+++++||...+.|+++++...+|.+-.+
T Consensus 3 ~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~-- 80 (141)
T PF01217_consen 3 KAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL-- 80 (141)
T ss_dssp EEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH--
T ss_pred EEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH--
Confidence 4689999999999999753322222233444444433332 2334457789999999999999999999988777553
Q ss_pred HHHHHH
Q 008053 224 QLELLY 229 (579)
Q Consensus 224 QL~~Ly 229 (579)
+++|+
T Consensus 81 -~e~l~ 85 (141)
T PF01217_consen 81 -LEFLH 85 (141)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 44444
No 4
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=94.62 E-value=0.39 Score=55.37 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHHHc--CCCceEEEEeCCeEEEEEecCC-EEE-EEEeCC------CCCHHHHHHHHHHHHHHHH
Q 008053 166 KLAGFSATLQAIISFVEN--GKDRIKLVRAGKHQVVFLIKGP-IYL-VCISCT------EEPYESLRGQLELLYGQMI 233 (579)
Q Consensus 166 ~ls~~~gvlqAIvSf~e~--~~d~L~~I~ag~~~~vFL~r~P-L~l-VaVS~~------~Es~~~L~~QL~~Ly~qil 233 (579)
+-...+|+++||++|.+. .++..+.|...++++||+.-.| +++ ++|... .-+...|+.+|...|....
T Consensus 34 eql~~IGL~qglv~Ft~~Fs~~~~~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~~Y~~F~ 111 (604)
T PF08217_consen 34 EQLRQIGLAQGLVSFTRTFSPDDPCDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQAYSMFR 111 (604)
T ss_pred HHHHHhhHHHHHHHHHHhcCCCCcccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHHHHHHHH
Confidence 345789999999999996 4556788999999999999988 554 344411 1233458888888887553
No 5
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.26 E-value=15 Score=40.73 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=49.7
Q ss_pred ceEEEecCCCcceeecC--CCchhhhhHHHHHHHHHHHHHcCCCce-EEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHH
Q 008053 145 KHFFILSHSGKPIYSRY--GDEHKLAGFSATLQAIISFVENGKDRI-KLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (579)
Q Consensus 145 Kh~FIlS~AGKPIySry--GdE~~ls~~~gvlqAIvSf~e~~~d~L-~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L 221 (579)
+.+|||+.-|||+.+|. || .-++-.+...-...+.+ .+|.. -.+..++..+++...+-||+|+.++.+-+...+
T Consensus 2 sa~fild~~G~~lisr~yr~d--v~~s~~~~F~~~l~~~e-~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v 78 (424)
T KOG0937|consen 2 SAVFILDHKGEVLISRDYRGD--VPMSSTEKFFRKLFEKE-EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALV 78 (424)
T ss_pred ceEEEEcCCCcEeEeeccccc--CChhhhhhHHHHHhhhc-ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHH
Confidence 57999999999999883 44 21222222222333333 33333 355667889999999999999999776665544
Q ss_pred HH
Q 008053 222 RG 223 (579)
Q Consensus 222 ~~ 223 (579)
..
T Consensus 79 ~~ 80 (424)
T KOG0937|consen 79 LS 80 (424)
T ss_pred HH
Confidence 33
No 6
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=78.02 E-value=28 Score=28.95 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=42.0
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHH----c-CCCceEE--EEeCCeEEEEEecCC-EEEEEE
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE----N-GKDRIKL--VRAGKHQVVFLIKGP-IYLVCI 211 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e----~-~~d~L~~--I~ag~~~~vFL~r~P-L~lVaV 211 (579)
+.+.|++..|-||.+...+......+.+.+.++....+ + +.++++. |+..++.+.+..-++ .+||.+
T Consensus 16 ~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~ 90 (91)
T PF03259_consen 16 RGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKGEIIITPVGDFYLLVVL 90 (91)
T ss_dssp EEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEECSTCEEEEEE
T ss_pred eEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCEEEEEEcCCCEEEEEE
Confidence 46789999999999943344333333334444443222 2 3567775 466788888888888 555543
No 7
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=76.68 E-value=68 Score=30.24 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=45.5
Q ss_pred eEEEecCCCcceeecC-C----------CchhhhhHHHHHHHHHHHHHc-----------CCCceEEEEeCCeEEEEEec
Q 008053 146 HFFILSHSGKPIYSRY-G----------DEHKLAGFSATLQAIISFVEN-----------GKDRIKLVRAGKHQVVFLIK 203 (579)
Q Consensus 146 h~FIlS~AGKPIySry-G----------dE~~ls~~~gvlqAIvSf~e~-----------~~d~L~~I~ag~~~~vFL~r 203 (579)
.|+|+..+|.-||.+- . ++++.--+.|++..|=++... +.+.++.++++..++.++.-
T Consensus 3 slyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT 82 (142)
T PF04099_consen 3 SLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFET 82 (142)
T ss_dssp EEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-
T ss_pred EEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEc
Confidence 5899999999999872 1 123344466777766666542 12569999999999887765
Q ss_pred C-CEEEEEEeCCCC
Q 008053 204 G-PIYLVCISCTEE 216 (579)
Q Consensus 204 ~-PL~lVaVS~~~E 216 (579)
. -+-+|+++..+-
T Consensus 83 ~TGlKFvl~td~~~ 96 (142)
T PF04099_consen 83 PTGLKFVLITDPNV 96 (142)
T ss_dssp TTS-EEEEEE-TTC
T ss_pred CcCcEEEEEecCCC
Confidence 4 599999998754
No 8
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.02 E-value=46 Score=31.64 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=61.5
Q ss_pred EEEecCCCcceeecC---------CCchhhhhHHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEecC-CEEEEEE
Q 008053 147 FFILSHSGKPIYSRY---------GDEHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLIKG-PIYLVCI 211 (579)
Q Consensus 147 ~FIlS~AGKPIySry---------GdE~~ls~~~gvlqAIvSf~e~-----~~d~L~~I~ag~~~~vFL~r~-PL~lVaV 211 (579)
|.||+.-|-=+|-+- +.|+.---..|.|-.|=||++. .+|...+++.+.-++.|+.-. .|.+|-+
T Consensus 6 ~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~ 85 (140)
T KOG3368|consen 6 FYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLN 85 (140)
T ss_pred EEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEe
Confidence 566666666666441 3444444457888888888873 467899999999999999876 4999999
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q 008053 212 SCTEEPYESLRGQLELLYGQM 232 (579)
Q Consensus 212 S~~~Es~~~L~~QL~~Ly~qi 232 (579)
+..+ ..-+|.-|.++|..+
T Consensus 86 Tdpk--~~~ir~vLq~IYs~l 104 (140)
T KOG3368|consen 86 TDPK--AGSIRDVLQYIYSHL 104 (140)
T ss_pred cCCC--cccHHHHHHHHHHHH
Confidence 8754 345888899999744
No 9
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.95 E-value=87 Score=30.77 Aligned_cols=120 Identities=21% Similarity=0.343 Sum_probs=76.5
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHH----HHc-CCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISF----VEN-GKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYE 219 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf----~e~-~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~ 219 (579)
|.++||.+.||-||..|=++.-.+. +-.=-.| |.. ..-+-.-...+++.+|+..---|+|-.+....|.+-
T Consensus 10 k~iliLD~~G~Ri~aKYY~~~~~s~----vkeqkaFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl 85 (175)
T KOG3343|consen 10 KAILILDSDGKRILAKYYDDPHPST----VKEQKAFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENEL 85 (175)
T ss_pred heEEEEcCCCCEeeeeecCCCcchh----HHHHHHHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcchhHH
Confidence 5699999999999999877766553 1111122 221 112222234577888888888899999988888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCCcccCCCChHHHH---HHHHHh---cCCChhhhh
Q 008053 220 SLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVF---SSLIHS---FNWNPATFL 278 (579)
Q Consensus 220 ~L~~QL~~Ly~qilSiLT~~l~r~f~krpNyDLRrlL~gtd~~l---~~Li~~---~~~~p~~~l 278 (579)
.|..-|.-+|.-+--+|- .|-|=|.+|...|.++ +.+|+. +..+|....
T Consensus 86 ~L~svL~~l~dal~llLr----------~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia 140 (175)
T KOG3343|consen 86 MLMSVLTCLFDALSLLLR----------KNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIA 140 (175)
T ss_pred HHHHHHHHHHHHHHHHHH----------hChhHHHHHhhhccceeehhhhccCceEEecCHHHHH
Confidence 888878777776655443 3445556666666533 444543 455665543
No 10
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=61.26 E-value=63 Score=27.07 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 008053 177 IISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMIL 234 (579)
Q Consensus 177 IvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~QL~~Ly~qilS 234 (579)
|+.-+.-.++.-..+..|+..|.++..+.|+++||+...-+...--.-|+-|......
T Consensus 5 il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~ 62 (83)
T PF13774_consen 5 ILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ 62 (83)
T ss_dssp HHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence 3333332333567888999999999999999999998876666555555555554443
No 11
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.08 E-value=1.4e+02 Score=33.76 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=69.8
Q ss_pred EEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHH
Q 008053 147 FFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLE 226 (579)
Q Consensus 147 ~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~QL~ 226 (579)
+-|.|..||+|-||.--|-.-+-+-|.+.|....+.. +..=-++..+..|+|+-.=..||+|.|+..+-..-+=..-|+
T Consensus 6 a~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~~-~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl~TL~ 84 (512)
T KOG2635|consen 6 ASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVSA-GKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDLETLR 84 (512)
T ss_pred EEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhcc-CCCccEEecccEEEEEEecccEEEEEEeccccchhhHHHHHH
Confidence 4588999999999976665555555666555555542 223346777889999999999999999986532222122233
Q ss_pred HHHHHH---HHHhhH--HHHHHhhhCCCCCcccCCCChHHHH
Q 008053 227 LLYGQM---ILILTK--SINRCFEKNPKFDMTPLLGGTDVVF 263 (579)
Q Consensus 227 ~Ly~qi---lSiLT~--~l~r~f~krpNyDLRrlL~gtd~~l 263 (579)
++-..| +++|-. -++..|+---.||=---|+--|.+.
T Consensus 85 Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~ 126 (512)
T KOG2635|consen 85 LFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVN 126 (512)
T ss_pred HHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhccccccc
Confidence 332222 233332 2455666555666555555444333
No 12
>PLN02673 quinolinate synthetase A
Probab=41.26 E-value=38 Score=39.99 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=19.7
Q ss_pred cCCCcceeecCCCchhhhhHHHHHHHHHH
Q 008053 151 SHSGKPIYSRYGDEHKLAGFSATLQAIIS 179 (579)
Q Consensus 151 S~AGKPIySryGdE~~ls~~~gvlqAIvS 179 (579)
...||-.|.-+-|-..+-||++++.++++
T Consensus 140 dddGkv~F~ADSDA~IVKGL~ALLl~~ls 168 (724)
T PLN02673 140 DQDGKMRFWADSDSEITKGFCSCLIWVLD 168 (724)
T ss_pred cCCCEEEEEEeCccHHHHHHHHHHHHHHc
Confidence 45688766655566667788887776654
No 13
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=37.33 E-value=2.9e+02 Score=25.85 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=50.8
Q ss_pred ceEEEecCCCcceeecC-C-Cchhhhh-----HHHHHH---HHHHHHHc--CCCceEEEEeCCeEEE-EEecCCEEEEEE
Q 008053 145 KHFFILSHSGKPIYSRY-G-DEHKLAG-----FSATLQ---AIISFVEN--GKDRIKLVRAGKHQVV-FLIKGPIYLVCI 211 (579)
Q Consensus 145 Kh~FIlS~AGKPIySry-G-dE~~ls~-----~~gvlq---AIvSf~e~--~~d~L~~I~ag~~~~v-FL~r~PL~lVaV 211 (579)
.+|||...||--||-|. | +|.++.+ +.+++. ||.+-.-. +...++.+.+++..+. |-.-.-+-+|.|
T Consensus 4 e~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~ 83 (134)
T COG5122 4 EQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFV 83 (134)
T ss_pred eEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEE
Confidence 37999999999999884 4 4444544 334433 44443333 3355777788887554 444456888888
Q ss_pred eCCCCCHHHHHHHHHHHHH
Q 008053 212 SCTEEPYESLRGQLELLYG 230 (579)
Q Consensus 212 S~~~Es~~~L~~QL~~Ly~ 230 (579)
+.... .-++-||.-+|.
T Consensus 84 ~~k~t--~na~~ql~kiY~ 100 (134)
T COG5122 84 AEKRT--VNALFQLQKIYS 100 (134)
T ss_pred ecCCc--hhHHHHHHHHHH
Confidence 84332 334555655554
No 14
>COG4127 Uncharacterized conserved protein [Function unknown]
Probab=36.78 E-value=65 Score=34.31 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhccCC----------------CCCceEEEEecCCeEEEEEecCCeeEEEEeCCCccHHHHHHHHH
Q 008053 493 QQKRLYRAYQKLYCSMHDKG----------------IGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKAVAIKTCN 556 (579)
Q Consensus 493 ~~krL~~~Yq~L~~~~h~~~----------------~~~~k~~y~~~~~~~ll~WvT~~FELY~~f~pl~~k~~ai~~~n 556 (579)
.|++|++.|+.+|-.+.+.- -|.+-+.|....+.+.++-+|++||.-..-.|-+.- .
T Consensus 39 dreqll~r~~E~Yp~ek~~t~r~~Agqiw~FvneI~KGDlvi~y~k~~r~y~IGkVtsdYEy~p~~~~~i~h-------T 111 (318)
T COG4127 39 DREQLLTRYQELYPQEKSGTVRSGAGQIWRFVNEIQKGDLVITYSKSNRTYLIGKVTSDYEYHPEWLEGIGH-------T 111 (318)
T ss_pred CHHHHHHHHHHHCCCCCcchHHHHHHHHHHHHHHhccCcEEEeecccCceEEEEEecCCcccCccccccCch-------h
Confidence 46678999999987664321 123345688889999999999999986554442222 3
Q ss_pred HHHHHhhhc
Q 008053 557 RVCQWVKDV 565 (579)
Q Consensus 557 kL~kWikk~ 565 (579)
+.++|+.++
T Consensus 112 rkVkWL~k~ 120 (318)
T COG4127 112 RKVKWLAKE 120 (318)
T ss_pred hHhHHhhhh
Confidence 678999654
No 15
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.35 E-value=3.4e+02 Score=26.68 Aligned_cols=109 Identities=19% Similarity=0.429 Sum_probs=65.5
Q ss_pred ceEEEecCCCcceeecC---CCchhhhhHHHHHHHHHH--------HHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeC
Q 008053 145 KHFFILSHSGKPIYSRY---GDEHKLAGFSATLQAIIS--------FVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISC 213 (579)
Q Consensus 145 Kh~FIlS~AGKPIySry---GdE~~ls~~~gvlqAIvS--------f~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~ 213 (579)
|-++||..-|||=-+++ =+|++---+.+-.-.++| |.+ +++. |.-.+.|+++-+-.-||||-|-.
T Consensus 3 ~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe-~~~l---~g~~d~rlIYrhYATLYFvfvvD 78 (182)
T KOG0936|consen 3 KAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLE-GNSL---IGGSDNRLIYRHYATLYFVFVVD 78 (182)
T ss_pred eEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhc-cccc---cCCccceeehheeeeEEEEEEEc
Confidence 56899999999976653 355544444444444444 222 2221 11126789998899999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCCcccCCCChHHHHHH
Q 008053 214 TEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSS 265 (579)
Q Consensus 214 ~~Es~~~L~~QL~~Ly~qilSiLT~~l~r~f~krpNyDLRrlL~gtd~~l~~ 265 (579)
.+|++-- .|+++ -++-.+++|+|++==-.||---......++..
T Consensus 79 ~sEsEL~---iLDLI-----QvfVEtLDkCF~nVcELDliF~~~k~h~iL~E 122 (182)
T KOG0936|consen 79 SSESELG---ILDLI-----QVFVETLDKCFENVCELDLIFNWQKVHAILAE 122 (182)
T ss_pred CCcchhH---HHHHH-----HHHHHHHHHHHHhhhhhhheeeHHHHHHHHHH
Confidence 7777632 34433 34557889999876555554333333333333
No 16
>PRK11778 putative inner membrane peptidase; Provisional
Probab=24.28 E-value=41 Score=36.39 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=47.2
Q ss_pred CCCcceeecCCCchhhhhHH-------------------HHHHHHHH---HHHcCCCceEEEEeCCeEEEEEecCCEEEE
Q 008053 152 HSGKPIYSRYGDEHKLAGFS-------------------ATLQAIIS---FVENGKDRIKLVRAGKHQVVFLIKGPIYLV 209 (579)
Q Consensus 152 ~AGKPIySryGdE~~ls~~~-------------------gvlqAIvS---f~e~~~d~L~~I~ag~~~~vFL~r~PL~lV 209 (579)
.+||||+...++-....+|+ |++..... .++..|=+.+.+++|+.+=..-.=+|
T Consensus 152 ~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~---- 227 (330)
T PRK11778 152 DAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGE---- 227 (330)
T ss_pred hcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCC----
Confidence 46899998776555444444 22222222 22345556677888876521110011
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHhhH
Q 008053 210 CISCTEEPYESLRGQLELLYGQMILILTK 238 (579)
Q Consensus 210 aVS~~~Es~~~L~~QL~~Ly~qilSiLT~ 238 (579)
.++|.-+.++..|+-+|.+++..+..
T Consensus 228 ---~see~Re~~q~~Ld~~y~~F~~~Va~ 253 (330)
T PRK11778 228 ---NTEEGREKFREELEETHQLFKDFVQR 253 (330)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13445577899999999999888764
Done!