Query 008053
Match_columns 579
No_of_seqs 141 out of 231
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_S AP-2 complex subunit si 96.6 0.018 6.2E-07 52.4 11.6 81 145-230 3-86 (142)
2 1w63_Q Adapter-related protein 96.2 0.051 1.7E-06 50.5 12.2 83 145-230 3-86 (158)
3 3tjz_C Coatomer subunit zeta-1 94.4 0.36 1.2E-05 44.8 11.6 72 145-221 14-90 (153)
4 1w63_M Adaptor-related protein 93.9 0.29 1E-05 52.0 11.1 83 145-230 4-86 (423)
5 2vgl_M AP-2 complex subunit MU 92.0 0.84 2.9E-05 48.6 11.4 80 145-230 3-84 (435)
6 2j3t_C Trafficking protein par 90.3 3.4 0.00012 37.8 12.2 102 146-257 5-122 (145)
7 2hz5_A Dynein light chain 2A, 87.9 2.6 8.8E-05 37.0 9.0 69 145-214 28-104 (106)
8 3l7h_A RE64145P, roadblock; LC 83.3 8.2 0.00028 33.2 9.8 69 145-214 19-95 (97)
9 3cue_C Transport protein parti 79.8 5.5 0.00019 37.0 8.1 83 146-230 5-108 (159)
10 1j3w_A Giding PROTEIN-MGLB; gl 73.5 37 0.0013 31.5 11.9 97 142-238 27-135 (163)
11 2j3w_A Sedlin, trafficking pro 59.1 68 0.0023 28.8 10.3 102 146-258 8-125 (142)
12 2nut_C Vesicle-trafficking pro 53.1 1.1E+02 0.0037 28.7 11.1 79 154-232 14-96 (196)
13 3cue_A Transport protein parti 49.6 2E+02 0.0068 28.2 14.5 62 187-256 118-202 (219)
14 3leq_A Uncharacterized protein 49.4 1.3E+02 0.0043 26.5 10.2 95 144-238 19-122 (126)
15 2lic_A Vitellogenin; lipid tra 41.6 12 0.00042 25.8 1.7 16 1-16 14-29 (35)
16 2fh5_A Signal recognition part 40.3 1E+02 0.0034 29.5 8.5 88 145-236 12-103 (185)
17 2vx8_A Nucleoporin-like protei 33.8 2.2E+02 0.0076 26.3 9.7 84 145-232 46-129 (169)
18 4b93_A Vesicle-associated memb 30.4 1.9E+02 0.0066 27.0 8.8 62 170-232 26-87 (189)
19 4afi_A AP-3 complex subunit de 26.9 2.2E+02 0.0074 26.5 8.4 60 172-232 80-139 (173)
20 1vet_B P14, late endosomal/lys 25.2 3.4E+02 0.012 23.7 12.1 89 144-232 19-115 (125)
No 1
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.60 E-value=0.018 Score=52.41 Aligned_cols=81 Identities=10% Similarity=0.224 Sum_probs=56.3
Q ss_pred ceEEEecCCCcceeecCCC---chhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHH
Q 008053 145 KHFFILSHSGKPIYSRYGD---EHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGd---E~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L 221 (579)
+-+||++..|||+.+||=. ++.-..+...+...+. ...+..--.+..+++++|+...+.||+||+++.++++-.+
T Consensus 3 ~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp EEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred EEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 4689999999999999754 3333333333333333 1122233457789999999999999999999988887554
Q ss_pred HHHHHHHHH
Q 008053 222 RGQLELLYG 230 (579)
Q Consensus 222 ~~QL~~Ly~ 230 (579)
|++||.
T Consensus 81 ---le~L~~ 86 (142)
T 2vgl_S 81 ---LEAIHN 86 (142)
T ss_dssp ---HHHHHH
T ss_pred ---HHHHHH
Confidence 566654
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.17 E-value=0.051 Score=50.51 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=55.7
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCC-CceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGK-DRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRG 223 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~-d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~ 223 (579)
+-+||++..|||+.+||=.......-..++..+...+...+ +.--.+..+++++|+...+.||+||+++.++++-.+
T Consensus 3 ~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~-- 80 (158)
T 1w63_Q 3 RFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT-- 80 (158)
T ss_dssp EEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH--
Confidence 46899999999999996433322211122233333333322 223457789999999999999999999988887554
Q ss_pred HHHHHHH
Q 008053 224 QLELLYG 230 (579)
Q Consensus 224 QL~~Ly~ 230 (579)
|++||.
T Consensus 81 -le~L~~ 86 (158)
T 1w63_Q 81 -LELIHR 86 (158)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 666664
No 3
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=94.40 E-value=0.36 Score=44.77 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=50.2
Q ss_pred ceEEEecCCCcceeecCCCch-----hhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEH-----KLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYE 219 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~-----~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~ 219 (579)
+-+||++..|||+.++|=..+ +-..+..-+...+ .. .+ -..+..+++++||-..+.||+|++++.+|++.
T Consensus 14 ~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~---~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 14 KAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT---HR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp EEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH---SS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred eEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH---hC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 579999999999999964321 1122332222222 22 22 24667799999999999999999999988886
Q ss_pred HH
Q 008053 220 SL 221 (579)
Q Consensus 220 ~L 221 (579)
.+
T Consensus 89 ~i 90 (153)
T 3tjz_C 89 ML 90 (153)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 4
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.86 E-value=0.29 Score=52.00 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=52.8
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQ 224 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~Q 224 (579)
+-+||++..||++.+||=..+.-.+....+...+.--.+.++.--.+..+++++|+.....|||||+++.++.+.. -
T Consensus 4 ~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~---~ 80 (423)
T 1w63_M 4 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL---V 80 (423)
T ss_dssp CEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH---H
T ss_pred EEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH---H
Confidence 5689999999999999643321112122222222111121233345778999999999999999999998877644 3
Q ss_pred HHHHHH
Q 008053 225 LELLYG 230 (579)
Q Consensus 225 L~~Ly~ 230 (579)
|++||.
T Consensus 81 le~L~~ 86 (423)
T 1w63_M 81 FSFLYK 86 (423)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 5
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=91.99 E-value=0.84 Score=48.63 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=53.0
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCC--CceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGK--DRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLR 222 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~--d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~ 222 (579)
+-+||++..||++.+||=....-. +.+.++...+.... +.--.+..+++++|+.....|||||+++.++.+..
T Consensus 3 ~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~-- 77 (435)
T 2vgl_M 3 GGLFIYNHKGEVLISRVYRDDIGR---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM-- 77 (435)
T ss_dssp CEEEEECTTCCEEEEEECSSSCCH---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH--
T ss_pred EEEEEECCCCCEEEEEecCCCCCh---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH--
Confidence 468999999999999974432111 22233222222211 22345778999999999999999999998887644
Q ss_pred HHHHHHHH
Q 008053 223 GQLELLYG 230 (579)
Q Consensus 223 ~QL~~Ly~ 230 (579)
-|++||.
T Consensus 78 -~le~L~~ 84 (435)
T 2vgl_M 78 -VFEFLYK 84 (435)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 4455543
No 6
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=90.34 E-value=3.4 Score=37.77 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=67.5
Q ss_pred eEEEecCCCcceeec-CCC--------chhhhhHHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEE-ecCCEEEEE
Q 008053 146 HFFILSHSGKPIYSR-YGD--------EHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFL-IKGPIYLVC 210 (579)
Q Consensus 146 h~FIlS~AGKPIySr-yGd--------E~~ls~~~gvlqAIvSf~e~-----~~d~L~~I~ag~~~~vFL-~r~PL~lVa 210 (579)
.|+|+..+|.|||.+ ++. ++..--+.|++.++-.+++. ..+.++.++.++.++.+. .-+.+-+|.
T Consensus 5 ~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl 84 (145)
T 2j3t_C 5 NLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVM 84 (145)
T ss_dssp EEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEE
Confidence 488999999999987 221 34444457888888888774 336789999988877644 455788988
Q ss_pred EeCCCCCHHHHHHHHHHHHH-HHHHHhhHHHHHHhhhCCCCCcccCCC
Q 008053 211 ISCTEEPYESLRGQLELLYG-QMILILTKSINRCFEKNPKFDMTPLLG 257 (579)
Q Consensus 211 VS~~~Es~~~L~~QL~~Ly~-qilSiLT~~l~r~f~krpNyDLRrlL~ 257 (579)
++...++ .++.-|.-||. .-+- .--|+|=|.+-.-+.
T Consensus 85 ~td~~~~--~i~~~l~~iy~~lYv~--------~v~kNPfy~~~~pI~ 122 (145)
T 2j3t_C 85 NTDLGVG--PIRDVLHHIYSALYVE--------FVVKNPLCPLGQTVQ 122 (145)
T ss_dssp EECTTCC--CCHHHHHHHHHTTHHH--------HTTTCTTSCTTSCCC
T ss_pred EecCCcc--hHHHHHHHHHHHHHHH--------HHhcCCCCCCCCcee
Confidence 8876543 36666666662 2221 122566666655554
No 7
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=87.85 E-value=2.6 Score=37.00 Aligned_cols=69 Identities=14% Similarity=0.344 Sum_probs=51.7
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHH------cCCCceEE--EEeCCeEEEEEecCCEEEEEEeCC
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE------NGKDRIKL--VRAGKHQVVFLIKGPIYLVCISCT 214 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e------~~~d~L~~--I~ag~~~~vFL~r~PL~lVaVS~~ 214 (579)
+=++|+...|.||-|. +|.+...-|.|.|+.++.... +..|+|+. |+..++.++....+-.+||.|-+.
T Consensus 28 ~G~iIln~~G~pIrSt-~d~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimIapd~~~~LiVvQ~~ 104 (106)
T 2hz5_A 28 QGIIVVNTEGIPIKST-MDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQNP 104 (106)
T ss_dssp EEEEEECTTCCEEEES-SCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEEEECC
T ss_pred eEEEEEcCCCCeEEEe-cCchHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEEEecCCEEEEEEecC
Confidence 4589999999999986 677777788899999887443 35678875 567888888888888888888654
No 8
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=83.33 E-value=8.2 Score=33.25 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=53.2
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHH------cCCCceEE--EEeCCeEEEEEecCCEEEEEEeCC
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE------NGKDRIKL--VRAGKHQVVFLIKGPIYLVCISCT 214 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e------~~~d~L~~--I~ag~~~~vFL~r~PL~lVaVS~~ 214 (579)
.-++|+...|.||-|.. |.+....|.+.++.++...+ +..|+|.. |+..+|.+......-..|+.|-+.
T Consensus 19 ~G~iI~n~~G~pirst~-d~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~liVvQ~~ 95 (97)
T 3l7h_A 19 VGTIVVNNEGIPVKSTL-DNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNP 95 (97)
T ss_dssp EEEEEEETTSCEEEESS-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEEEEEC-
T ss_pred eEEEEECCCCCEeEEeC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEEEEecC
Confidence 35799999999998864 55666778888888876543 34588876 567889999998888999888654
No 9
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=79.81 E-value=5.5 Score=37.01 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=59.0
Q ss_pred eEEEecCCCcceeec-C--------C------CchhhhhHHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEec-C
Q 008053 146 HFFILSHSGKPIYSR-Y--------G------DEHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLIK-G 204 (579)
Q Consensus 146 h~FIlS~AGKPIySr-y--------G------dE~~ls~~~gvlqAIvSf~e~-----~~d~L~~I~ag~~~~vFL~r-~ 204 (579)
.|+|+..+|.|||.+ + | +++..--+.|++.++-.+++. ..|.+..+.+++.++.+..- +
T Consensus 5 ~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~T 84 (159)
T 3cue_C 5 SFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTAS 84 (159)
T ss_dssp EEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSS
T ss_pred EEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCC
Confidence 589999999999976 3 1 133444467888888888874 23679999999988776554 4
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHH
Q 008053 205 PIYLVCISCTEEPYESLRGQLELLYG 230 (579)
Q Consensus 205 PL~lVaVS~~~Es~~~L~~QL~~Ly~ 230 (579)
.+-||.++...+ ..++.-|.-||.
T Consensus 85 giKFvl~td~~~--~~i~~~l~~iy~ 108 (159)
T 3cue_C 85 GLWFVLLSDFKQ--QSYTQVLQYIYS 108 (159)
T ss_dssp CCEEEEECCSSS--SCTHHHHHHHHH
T ss_pred CCEEEEEeCCCc--chHHHHHHHHHH
Confidence 699999987653 345566666664
No 10
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=73.47 E-value=37 Score=31.46 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=63.6
Q ss_pred ccCceEEEecCCCcceee-----cCC--CchhhhhHHHHHHHHHHHHH-c-CCCceE--EEEeCCeEEEEEecCC-EEEE
Q 008053 142 KRKKHFFILSHSGKPIYS-----RYG--DEHKLAGFSATLQAIISFVE-N-GKDRIK--LVRAGKHQVVFLIKGP-IYLV 209 (579)
Q Consensus 142 ~~~Kh~FIlS~AGKPIyS-----ryG--dE~~ls~~~gvlqAIvSf~e-~-~~d~L~--~I~ag~~~~vFL~r~P-L~lV 209 (579)
..-+|.+|+|.-|-+|-+ .-+ |.+.++..++.++++..-.. . +..+++ .|...+..+++..=|+ -+|+
T Consensus 27 ~Gv~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~ 106 (163)
T 1j3w_A 27 TGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLV 106 (163)
T ss_dssp HCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEE
T ss_pred CCceEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEE
Confidence 356899999999999998 433 55556665555555443222 1 223343 3444555555555565 7888
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHhhH
Q 008053 210 CISCTEEPYESLRGQLELLYGQMILILTK 238 (579)
Q Consensus 210 aVS~~~Es~~~L~~QL~~Ly~qilSiLT~ 238 (579)
.+...+-..-.++.++.-+=.+|-.+|+.
T Consensus 107 Vla~~~a~lG~v~~~m~~~v~~l~~~L~~ 135 (163)
T 1j3w_A 107 LVFDETAPLGKVKLHGKRASEALARIAEE 135 (163)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 88887777888888888777777666654
No 11
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=59.12 E-value=68 Score=28.76 Aligned_cols=102 Identities=16% Similarity=0.273 Sum_probs=61.1
Q ss_pred eEEEecCCCcceeec-CCCc--------hhhhhHHHHHHHHHHHHHc-----CCCceEEEE-eCCeEEE-EEecCCEEEE
Q 008053 146 HFFILSHSGKPIYSR-YGDE--------HKLAGFSATLQAIISFVEN-----GKDRIKLVR-AGKHQVV-FLIKGPIYLV 209 (579)
Q Consensus 146 h~FIlS~AGKPIySr-yGdE--------~~ls~~~gvlqAIvSf~e~-----~~d~L~~I~-ag~~~~v-FL~r~PL~lV 209 (579)
.|.|+...|.|||.+ ++.. .++ -+-+++.+...+++. .+-.+..+. ..+.++. |..-+.+-+|
T Consensus 8 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l-~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfv 86 (142)
T 2j3w_A 8 YFVIVGHHDNPVFEMEFLPPGKAESKDDHRH-LNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFI 86 (142)
T ss_dssp EEEEECTTSCEEEEEEECCSCCGGGHHHHHH-HHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEE
T ss_pred EEEEEeCCCCEEEEEecCCcCcCCccHHHHH-HHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEE
Confidence 588999999999977 4442 223 234678888887763 122333332 3444443 4455567777
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCCcccCCCC
Q 008053 210 CISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGG 258 (579)
Q Consensus 210 aVS~~~Es~~~L~~QL~~Ly~qilSiLT~~l~r~f~krpNyDLRrlL~g 258 (579)
.+.... ....++.-|.-+|..-+- ..- +|=|.+-.-+..
T Consensus 87 l~~d~~-~~~~i~~~~~~iy~~Y~~--------~v~-NPfy~~~~pI~s 125 (142)
T 2j3w_A 87 MLHDVR-QEDGIKNFFTDVYDLYIK--------FAM-NPFYEPNSPIRS 125 (142)
T ss_dssp EEESSC-CHHHHHHHHHHHHHHHHH--------HHH-STTCCTTCCCCC
T ss_pred EEeCCC-CcHHHHHHHHHHHHHHHH--------Hhc-CCCCCCCCceec
Confidence 777542 467788888888853322 222 677766555543
No 12
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=53.06 E-value=1.1e+02 Score=28.66 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=52.4
Q ss_pred CcceeecCCCc----hhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHHHHH
Q 008053 154 GKPIYSRYGDE----HKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLY 229 (579)
Q Consensus 154 GKPIySryGdE----~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~QL~~Ly 229 (579)
|.|+....-.+ .++..+-.++..|+..+....+.-.++..|++.|.|+..+.|+++||+...-|...-..-|+-|.
T Consensus 14 ~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~ 93 (196)
T 2nut_C 14 GLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 93 (196)
T ss_dssp CCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHH
Confidence 77777654321 13445556666666666543445567888999999999999999999987767655444455444
Q ss_pred HHH
Q 008053 230 GQM 232 (579)
Q Consensus 230 ~qi 232 (579)
...
T Consensus 94 ~~F 96 (196)
T 2nut_C 94 SEF 96 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 13
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=49.56 E-value=2e+02 Score=28.19 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=37.4
Q ss_pred ceEEEEeCCeEEE-EEecCCEEEEEEeCCCCCH----------------------HHHHHHHHHHHHHHHHHhhHHHHHH
Q 008053 187 RIKLVRAGKHQVV-FLIKGPIYLVCISCTEEPY----------------------ESLRGQLELLYGQMILILTKSINRC 243 (579)
Q Consensus 187 ~L~~I~ag~~~~v-FL~r~PL~lVaVS~~~Es~----------------------~~L~~QL~~Ly~qilSiLT~~l~r~ 243 (579)
.++.++.++.++. |..-+.+-||++.....++ ..++.-|.-||.--+ +.
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYv--------d~ 189 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYS--------DY 189 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHH--------HH
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHH--------HH
Confidence 5777888877655 4445568888888654422 567777777774322 22
Q ss_pred hhhCCCCCcccCC
Q 008053 244 FEKNPKFDMTPLL 256 (579)
Q Consensus 244 f~krpNyDLRrlL 256 (579)
.-|+|=|++-.-+
T Consensus 190 VmkNPFY~~~~pI 202 (219)
T 3cue_A 190 VMKDPSYSMEMPI 202 (219)
T ss_dssp HHSCTTCCTTSCC
T ss_pred HhcCCCCCCCCcc
Confidence 2356777664443
No 14
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=49.39 E-value=1.3e+02 Score=26.46 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=56.1
Q ss_pred CceEEEecCCCcceeecCC-Cc---hhhhhHHHHHHHHHHHHH--cCCCceEE--EEeCCeEEEEEecCC-EEEEEEeCC
Q 008053 144 KKHFFILSHSGKPIYSRYG-DE---HKLAGFSATLQAIISFVE--NGKDRIKL--VRAGKHQVVFLIKGP-IYLVCISCT 214 (579)
Q Consensus 144 ~Kh~FIlS~AGKPIySryG-dE---~~ls~~~gvlqAIvSf~e--~~~d~L~~--I~ag~~~~vFL~r~P-L~lVaVS~~ 214 (579)
=+|..++|.-|-||-+..+ +. +.++..++.++++..-.. -+.++++. |+..+..+++..=++ .+|+.+...
T Consensus 19 v~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~ 98 (126)
T 3leq_A 19 VDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQ 98 (126)
T ss_dssp EEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECT
T ss_pred ceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCC
Confidence 4689999999999998764 32 456655555554433221 12344443 455566666666665 888888887
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhH
Q 008053 215 EEPYESLRGQLELLYGQMILILTK 238 (579)
Q Consensus 215 ~Es~~~L~~QL~~Ly~qilSiLT~ 238 (579)
+-....++.++.-+=.+|-..||.
T Consensus 99 ~a~lG~v~~em~~~v~ri~~~L~~ 122 (126)
T 3leq_A 99 GADVGVVAYQMNMLVKKIGEHLSA 122 (126)
T ss_dssp TCCHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 777888888888877777666653
No 15
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=41.56 E-value=12 Score=25.79 Aligned_cols=16 Identities=69% Similarity=0.536 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCccccc
Q 008053 1 MSTSSSSPSSDEELIF 16 (579)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (579)
+|+||||+|++++.++
T Consensus 14 istssssissseendf 29 (35)
T 2lic_A 14 ISTSSSSISSSEENDF 29 (35)
T ss_dssp SCSCSSCCSTTCSCSS
T ss_pred cccccccccccccccc
Confidence 4789999998887654
No 16
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=40.34 E-value=1e+02 Score=29.47 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=55.4
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHH--HHHcCCCceEEEEeCCe--EEEEEecCCEEEEEEeCCCCCHHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIIS--FVENGKDRIKLVRAGKH--QVVFLIKGPIYLVCISCTEEPYES 220 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvS--f~e~~~d~L~~I~ag~~--~~vFL~r~PL~lVaVS~~~Es~~~ 220 (579)
.||.|||..|==+|+.-|... .+...+.++|. +.|+...+ .....++. +..|.+.=-|+||+|=..--....
T Consensus 12 D~~~IfTkGGvVLWs~~~~~~---~~~~~IN~LIr~VlLEER~~~-~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 12 DFFTIFSKGGLVLWCFQGVSD---SCTGPVNALIRSVLLQERGGN-NSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SEEEEEETTSBEEEEEBTTTB---SCCCHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred eEEEEEeCCeEEEEeecCCcc---cccchHHHHHHHhhhccccCC-CceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 589999999999999434322 23457899998 55653321 12444553 788888889999999776444455
Q ss_pred HHHHHHHHHHHHHHHh
Q 008053 221 LRGQLELLYGQMILIL 236 (579)
Q Consensus 221 L~~QL~~Ly~qilSiL 236 (579)
+-.-|+-+...++...
T Consensus 88 iD~LL~~v~~~Fv~~Y 103 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKY 103 (185)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544444
No 17
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=33.77 E-value=2.2e+02 Score=26.33 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=53.8
Q ss_pred ceEEEecCCCcceeecCCCchhhhhHHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHH
Q 008053 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQ 224 (579)
Q Consensus 145 Kh~FIlS~AGKPIySryGdE~~ls~~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~Q 224 (579)
-.|-+++..|.+++..-.... .+-.+..+|+..+.. .+.-..+..|+..|.|+..+.|++|||+...-+....-.-
T Consensus 46 ilYa~VaRG~~VLae~t~~~g---nf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~f 121 (169)
T 2vx8_A 46 ILFAVVARGTTILAKHAWCGG---NFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 121 (169)
T ss_dssp CCEEEEEETTEEEEEEESSCB---SHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred eEEEEEEcCCEEEEEeccCCC---CHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHH
Confidence 456677777777765322221 334455666655543 2345678889999999999999999999877665554444
Q ss_pred HHHHHHHH
Q 008053 225 LELLYGQM 232 (579)
Q Consensus 225 L~~Ly~qi 232 (579)
|+-|....
T Consensus 122 LedI~~eF 129 (169)
T 2vx8_A 122 LNEVKKRF 129 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 18
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=30.35 E-value=1.9e+02 Score=26.98 Aligned_cols=62 Identities=11% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 008053 170 FSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQM 232 (579)
Q Consensus 170 ~~gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~QL~~Ly~qi 232 (579)
|..+...|+..+. ..+.-.++..|++.|.|+..+.|+|+||+..+-|...--.-|+=|....
T Consensus 26 f~~ia~~iL~kip-~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF 87 (189)
T 4b93_A 26 FLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 87 (189)
T ss_dssp HHHHHHHHHTTCC-SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHH
Confidence 3344444544443 2344567889999999999999999999987766554444444444433
No 19
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=26.86 E-value=2.2e+02 Score=26.55 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCeEEEEEecCCEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 008053 172 ATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQM 232 (579)
Q Consensus 172 gvlqAIvSf~e~~~d~L~~I~ag~~~~vFL~r~PL~lVaVS~~~Es~~~L~~QL~~Ly~qi 232 (579)
.+...|+..... ++.-.++..|++.|.|+.++.++++||+...-+...--.-|+-|....
T Consensus 80 ~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~eF 139 (173)
T 4afi_A 80 EVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 139 (173)
T ss_dssp HHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHHH
Confidence 344444444432 244567888999999999999999999987666554444444444333
No 20
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=25.16 E-value=3.4e+02 Score=23.66 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=55.4
Q ss_pred CceEEEecCCCcceeecCC---CchhhhhHHHHHHHHHHHHHc---CCCceEE--EEeCCeEEEEEecCCEEEEEEeCCC
Q 008053 144 KKHFFILSHSGKPIYSRYG---DEHKLAGFSATLQAIISFVEN---GKDRIKL--VRAGKHQVVFLIKGPIYLVCISCTE 215 (579)
Q Consensus 144 ~Kh~FIlS~AGKPIySryG---dE~~ls~~~gvlqAIvSf~e~---~~d~L~~--I~ag~~~~vFL~r~PL~lVaVS~~~ 215 (579)
=+|.+++|.-|-+|=+.-+ |.+.++.+++.++.+..-... .+++++. |...+..+.+..=+..+|+.++..+
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 3699999999999987544 334566666666555443322 2244543 4445544444433678888888877
Q ss_pred CCHHHHHHHHHHHHHHH
Q 008053 216 EPYESLRGQLELLYGQM 232 (579)
Q Consensus 216 Es~~~L~~QL~~Ly~qi 232 (579)
-....++.+..-+-.+|
T Consensus 99 a~lGlv~~~m~~lv~~L 115 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYL 115 (125)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 66777777666555444
Done!