Query 008054
Match_columns 579
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 18:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07642 BAR_ASAP2 The Bin/Amph 100.0 3.5E-45 7.6E-50 353.5 16.1 156 1-162 49-215 (215)
2 cd07640 BAR_ASAP3 The Bin/Amph 100.0 4.2E-39 9.1E-44 309.6 14.3 155 6-162 46-213 (213)
3 cd07604 BAR_ASAPs The Bin/Amph 100.0 8.3E-35 1.8E-39 280.3 13.7 156 1-162 49-215 (215)
4 cd07641 BAR_ASAP1 The Bin/Amph 100.0 2.2E-33 4.8E-38 271.5 12.6 154 7-162 47-215 (215)
5 cd07603 BAR_ACAPs The Bin/Amph 99.7 1.6E-17 3.4E-22 159.1 12.9 144 7-159 47-200 (200)
6 cd07634 BAR_GAP10-like The Bin 99.7 3.8E-17 8.2E-22 158.5 12.1 135 16-158 64-206 (207)
7 cd07639 BAR_ACAP1 The Bin/Amph 99.7 1.9E-16 4E-21 152.7 11.9 143 7-158 47-199 (200)
8 cd07606 BAR_SFC_plant The Bin/ 99.7 5.1E-16 1.1E-20 149.5 12.5 143 6-158 45-202 (202)
9 cd07601 BAR_APPL The Bin/Amphi 99.7 1.4E-15 3.1E-20 148.0 15.7 145 12-165 58-213 (215)
10 cd07307 BAR The Bin/Amphiphysi 99.6 4.6E-15 1E-19 129.1 13.2 141 16-158 51-194 (194)
11 KOG0521 Putative GTPase activa 99.5 2.7E-13 5.8E-18 151.7 13.7 152 12-167 73-228 (785)
12 PF03114 BAR: BAR domain; Int 99.5 6.4E-13 1.4E-17 120.1 13.1 154 2-159 74-228 (229)
13 cd07637 BAR_ACAP3 The Bin/Amph 99.4 1.8E-12 4E-17 124.8 13.8 138 13-159 55-200 (200)
14 cd07638 BAR_ACAP2 The Bin/Amph 99.1 1.9E-09 4.1E-14 104.5 12.6 139 12-159 54-200 (200)
15 smart00721 BAR BAR domain. 99.0 7.1E-09 1.5E-13 96.8 15.4 145 13-160 89-238 (239)
16 cd07635 BAR_GRAF2 The Bin/Amph 99.0 3.4E-09 7.4E-14 103.5 12.5 139 17-158 65-206 (207)
17 cd07631 BAR_APPL1 The Bin/Amph 99.0 1.4E-08 3E-13 99.9 15.5 154 9-165 54-213 (215)
18 cd07602 BAR_RhoGAP_OPHN1-like 98.9 6.5E-09 1.4E-13 101.5 11.7 143 13-158 61-206 (207)
19 cd07595 BAR_RhoGAP_Rich-like T 98.9 1.6E-08 3.6E-13 100.1 14.6 160 1-164 62-229 (244)
20 cd07632 BAR_APPL2 The Bin/Amph 98.9 2.1E-08 4.6E-13 98.6 13.3 144 8-152 53-199 (215)
21 cd07592 BAR_Endophilin_A The B 98.9 2.3E-08 5E-13 98.2 13.6 146 1-160 69-217 (223)
22 cd07594 BAR_Endophilin_B The B 98.8 1.1E-07 2.3E-12 94.1 13.0 151 1-157 74-227 (229)
23 cd07593 BAR_MUG137_fungi The B 98.8 1.3E-07 2.8E-12 92.6 13.4 138 13-157 69-206 (215)
24 cd07636 BAR_GRAF The Bin/Amphi 98.7 2.2E-07 4.7E-12 91.0 13.2 144 13-158 60-206 (207)
25 cd07600 BAR_Gvp36 The Bin/Amph 98.7 4.6E-07 9.9E-12 90.2 14.5 140 12-157 100-240 (242)
26 cd07618 BAR_Rich1 The Bin/Amph 98.7 4.6E-07 9.9E-12 90.6 14.5 156 1-165 62-232 (246)
27 cd07613 BAR_Endophilin_A1 The 98.6 4.9E-07 1.1E-11 89.4 13.2 141 1-160 69-217 (223)
28 cd07616 BAR_Endophilin_B1 The 98.6 5.1E-07 1.1E-11 89.6 13.3 150 1-156 74-226 (229)
29 cd07619 BAR_Rich2 The Bin/Amph 98.6 4.8E-07 1E-11 90.7 12.9 157 1-165 62-234 (248)
30 KOG1118 Lysophosphatidic acid 98.6 2.9E-07 6.3E-12 95.2 11.6 141 2-159 89-235 (366)
31 cd07615 BAR_Endophilin_A3 The 98.6 6.6E-07 1.4E-11 88.5 13.1 147 1-160 69-217 (223)
32 cd07614 BAR_Endophilin_A2 The 98.6 9.6E-07 2.1E-11 87.3 13.3 146 1-159 69-216 (223)
33 cd07620 BAR_SH3BP1 The Bin/Amp 98.5 1.5E-06 3.3E-11 87.7 14.3 153 1-161 62-239 (257)
34 cd07633 BAR_OPHN1 The Bin/Amph 98.4 3.3E-06 7.2E-11 83.1 12.5 141 16-158 64-206 (207)
35 cd07617 BAR_Endophilin_B2 The 98.4 4.4E-06 9.4E-11 82.8 12.7 142 1-157 74-218 (220)
36 cd07590 BAR_Bin3 The Bin/Amphi 97.7 0.00066 1.4E-08 67.4 13.6 159 3-165 53-218 (225)
37 PF10455 BAR_2: Bin/amphiphysi 97.6 0.00097 2.1E-08 68.7 13.3 145 3-157 134-285 (289)
38 PF08397 IMD: IRSp53/MIM homol 97.5 0.0051 1.1E-07 59.7 16.0 151 13-165 52-214 (219)
39 cd07596 BAR_SNX The Bin/Amphip 97.1 0.0042 9.1E-08 57.2 10.1 155 2-158 45-218 (218)
40 cd07591 BAR_Rvs161p The Bin/Am 97.1 0.009 1.9E-07 58.9 12.8 133 27-165 77-217 (224)
41 cd07609 BAR_SIP3_fungi The Bin 96.5 0.02 4.3E-07 56.7 10.4 88 22-112 63-156 (214)
42 PF09325 Vps5: Vps5 C terminal 96.4 0.056 1.2E-06 51.4 12.1 149 8-157 70-235 (236)
43 cd07588 BAR_Amphiphysin The Bi 95.8 0.23 4.9E-06 49.3 13.6 136 22-162 68-209 (211)
44 KOG3771 Amphiphysin [Intracell 95.8 0.12 2.7E-06 56.6 12.7 135 34-173 98-237 (460)
45 cd07627 BAR_Vps5p The Bin/Amph 95.7 0.1 2.3E-06 50.6 10.8 147 8-155 50-213 (216)
46 cd07624 BAR_SNX7_30 The Bin/Am 95.7 0.35 7.6E-06 46.7 14.2 130 16-157 67-199 (200)
47 cd07589 BAR_DNMBP The Bin/Amph 95.6 0.24 5.2E-06 47.8 12.5 125 23-159 66-192 (195)
48 cd07611 BAR_Amphiphysin_I_II T 94.9 0.66 1.4E-05 46.5 13.7 129 32-164 78-211 (211)
49 cd07643 I-BAR_IMD_MIM Inverse 94.8 0.93 2E-05 46.2 14.4 144 14-165 66-226 (231)
50 cd07599 BAR_Rvs167p The Bin/Am 94.6 1.2 2.6E-05 43.1 14.1 129 20-154 72-211 (216)
51 cd07628 BAR_Atg24p The Bin/Amp 94.3 0.73 1.6E-05 44.3 12.0 124 16-157 58-184 (185)
52 cd07623 BAR_SNX1_2 The Bin/Amp 93.8 0.56 1.2E-05 46.1 10.5 143 14-158 65-222 (224)
53 cd07612 BAR_Bin2 The Bin/Amphi 93.8 1 2.2E-05 45.2 12.1 128 32-163 78-210 (211)
54 PF13805 Pil1: Eisosome compon 93.7 0.92 2E-05 47.1 12.1 107 9-124 90-198 (271)
55 cd07605 I-BAR_IMD Inverse (I)- 93.3 2.2 4.7E-05 42.9 13.7 138 14-153 63-213 (223)
56 cd07621 BAR_SNX5_6 The Bin/Amp 93.1 1.3 2.8E-05 44.6 11.6 140 9-152 71-218 (219)
57 PF06456 Arfaptin: Arfaptin-li 93.0 1.1 2.4E-05 45.0 11.1 129 14-150 86-227 (229)
58 cd07598 BAR_FAM92 The Bin/Amph 91.6 6.1 0.00013 39.3 14.2 144 12-160 54-203 (211)
59 cd07660 BAR_Arfaptin The Bin/A 91.4 3 6.4E-05 41.8 11.8 138 13-155 52-197 (201)
60 cd07610 FCH_F-BAR The Extended 90.5 6 0.00013 36.6 12.3 127 16-147 54-184 (191)
61 cd07630 BAR_SNX_like The Bin/A 89.9 6.2 0.00014 38.8 12.4 92 16-112 61-152 (198)
62 cd07659 BAR_PICK1 The Bin/Amph 86.7 25 0.00055 35.9 14.5 135 14-153 55-208 (215)
63 cd07629 BAR_Atg20p The Bin/Amp 86.6 18 0.00039 35.1 13.1 122 16-156 60-185 (187)
64 KOG3725 SH3 domain protein SH3 85.5 16 0.00035 38.7 12.9 137 17-155 111-258 (375)
65 cd07608 BAR_ArfGAP_fungi The B 85.5 12 0.00025 37.4 11.4 130 23-158 59-191 (192)
66 cd07645 I-BAR_IMD_BAIAP2L1 Inv 84.7 4.2 9.1E-05 41.5 8.1 53 13-65 62-116 (226)
67 cd07625 BAR_Vps17p The Bin/Amp 84.3 15 0.00033 37.3 11.8 139 15-158 72-230 (230)
68 cd07664 BAR_SNX2 The Bin/Amphi 83.4 13 0.00027 37.7 10.8 144 13-157 74-231 (234)
69 cd07622 BAR_SNX4 The Bin/Amphi 83.1 26 0.00057 34.5 12.7 132 14-158 51-199 (201)
70 cd07663 BAR_SNX5 The Bin/Amphi 82.9 23 0.00049 36.0 12.3 136 13-152 74-217 (218)
71 cd00011 BAR_Arfaptin_like The 81.7 62 0.0013 32.7 14.7 92 63-155 103-200 (203)
72 cd07662 BAR_SNX6 The Bin/Amphi 80.2 31 0.00068 35.2 12.2 136 13-152 74-217 (218)
73 cd07667 BAR_SNX30 The Bin/Amph 77.0 34 0.00074 35.2 11.6 137 13-155 87-237 (240)
74 cd07666 BAR_SNX7 The Bin/Amphi 74.6 82 0.0018 32.4 13.5 97 49-155 136-240 (243)
75 cd07650 F-BAR_Syp1p_like The F 74.1 52 0.0011 32.8 11.8 58 100-157 147-211 (228)
76 PF05983 Med7: MED7 protein; 73.2 12 0.00026 35.9 6.8 59 25-84 71-156 (162)
77 PF12729 4HB_MCP_1: Four helix 72.9 62 0.0013 28.0 14.0 119 30-166 53-173 (181)
78 cd07646 I-BAR_IMD_IRSp53 Inver 72.7 70 0.0015 33.1 12.4 55 13-67 64-119 (232)
79 KOG2273 Membrane coat complex 71.3 43 0.00092 36.5 11.3 40 119-158 458-497 (503)
80 PF11985 DUF3486: Protein of u 67.0 29 0.00063 33.1 8.0 95 4-108 75-178 (180)
81 KOG1451 Oligophrenin-1 and rel 66.7 1.2E+02 0.0025 35.8 13.7 149 17-174 83-240 (812)
82 cd07648 F-BAR_FCHO The F-BAR ( 63.1 95 0.002 31.0 11.1 24 124-147 199-222 (261)
83 cd07665 BAR_SNX1 The Bin/Amphi 59.7 1.6E+02 0.0034 30.2 12.0 62 13-77 74-135 (234)
84 PF03938 OmpH: Outer membrane 59.1 91 0.002 28.4 9.4 22 152-173 115-136 (158)
85 PF06260 DUF1024: Protein of u 58.8 17 0.00036 32.3 4.4 49 49-98 21-69 (82)
86 PF10376 Mei5: Double-strand r 58.6 67 0.0015 32.6 9.2 114 25-175 105-220 (221)
87 smart00721 BAR BAR domain. 57.8 1.7E+02 0.0038 27.7 12.1 64 15-78 98-161 (239)
88 cd07307 BAR The Bin/Amphiphysi 57.2 1.4E+02 0.003 26.3 12.4 77 36-116 67-145 (194)
89 PRK10780 periplasmic chaperone 57.1 1E+02 0.0022 29.2 9.6 24 150-173 120-143 (165)
90 PRK00409 recombination and DNA 55.6 2.3E+02 0.005 33.5 14.0 30 13-42 500-529 (782)
91 PF12729 4HB_MCP_1: Four helix 53.4 1.5E+02 0.0032 25.6 9.8 30 13-42 73-102 (181)
92 cd07594 BAR_Endophilin_B The B 52.5 1.9E+02 0.0041 29.5 11.3 121 15-143 96-219 (229)
93 COG3105 Uncharacterized protei 52.5 44 0.00096 32.2 6.4 53 16-78 20-83 (138)
94 cd07651 F-BAR_PombeCdc15_like 52.4 1.3E+02 0.0028 29.6 9.9 64 15-78 56-134 (236)
95 PRK14471 F0F1 ATP synthase sub 51.6 69 0.0015 29.9 7.5 41 39-79 30-70 (164)
96 PF15294 Leu_zip: Leucine zipp 51.3 1.9E+02 0.004 30.8 11.2 121 18-157 22-156 (278)
97 cd07644 I-BAR_IMD_BAIAP2L2 Inv 51.1 1.4E+02 0.003 30.8 9.9 51 13-63 62-113 (215)
98 PRK14472 F0F1 ATP synthase sub 50.5 91 0.002 29.6 8.2 39 41-79 42-80 (175)
99 PRK07352 F0F1 ATP synthase sub 49.5 1.6E+02 0.0035 27.9 9.7 31 49-79 51-81 (174)
100 PF08855 DUF1825: Domain of un 48.9 42 0.0009 31.1 5.5 51 25-75 8-58 (108)
101 KOG3876 Arfaptin and related p 48.5 1.7E+02 0.0037 31.5 10.4 96 58-154 217-319 (341)
102 cd09244 BRO1_Rhophilin Protein 47.9 1.6E+02 0.0035 31.7 10.4 31 103-140 272-302 (350)
103 cd07661 BAR_ICA69 The Bin/Amph 47.2 1.2E+02 0.0025 31.1 8.7 142 13-155 38-200 (204)
104 PRK06569 F0F1 ATP synthase sub 47.1 2.3E+02 0.005 27.6 10.4 67 50-125 43-111 (155)
105 cd07674 F-BAR_FCHO1 The F-BAR 47.1 1.7E+02 0.0037 29.6 10.0 18 126-143 201-218 (261)
106 KOG3433 Protein involved in me 46.3 1.6E+02 0.0036 30.0 9.5 115 30-148 47-170 (203)
107 CHL00118 atpG ATP synthase CF0 46.3 91 0.002 29.2 7.4 29 51-79 56-84 (156)
108 PRK07353 F0F1 ATP synthase sub 45.0 1.1E+02 0.0024 27.5 7.6 25 55-79 43-67 (140)
109 KOG3564 GTPase-activating prot 44.8 3E+02 0.0066 31.8 12.2 17 62-78 35-51 (604)
110 smart00182 CULLIN Cullin. 44.6 25 0.00054 31.8 3.4 76 33-111 33-117 (142)
111 cd07593 BAR_MUG137_fungi The B 44.1 2.4E+02 0.0052 28.5 10.4 118 15-143 78-198 (215)
112 cd07684 F-BAR_srGAP3 The F-BAR 43.9 4.2E+02 0.009 28.0 14.7 51 100-152 189-240 (253)
113 PRK09470 cpxA two-component se 43.7 3.8E+02 0.0081 27.4 12.3 42 13-54 218-262 (461)
114 PF14988 DUF4515: Domain of un 43.4 1.2E+02 0.0026 30.3 8.2 36 131-166 99-135 (206)
115 COG3853 TelA Uncharacterized p 42.0 99 0.0021 34.2 7.9 101 11-124 88-197 (386)
116 cd07658 F-BAR_NOSTRIN The F-BA 41.5 3.8E+02 0.0083 27.0 13.1 46 15-60 58-103 (239)
117 PRK13454 F0F1 ATP synthase sub 41.1 1.2E+02 0.0026 29.3 7.6 39 42-80 56-94 (181)
118 PF10168 Nup88: Nuclear pore c 40.7 2.8E+02 0.006 32.8 11.6 99 23-123 604-709 (717)
119 PF03114 BAR: BAR domain; Int 40.1 2.5E+02 0.0055 25.7 9.2 126 16-149 96-225 (229)
120 cd09236 V_AnPalA_UmRIM20_like 39.9 2.4E+02 0.0052 29.9 10.1 46 12-59 223-286 (353)
121 PF12523 DUF3725: Protein of u 39.5 18 0.0004 31.4 1.6 27 2-29 10-36 (74)
122 KOG4151 Myosin assembly protei 39.4 52 0.0011 38.9 5.6 80 15-98 503-583 (748)
123 PRK13460 F0F1 ATP synthase sub 39.1 1.7E+02 0.0038 27.7 8.2 31 49-79 48-78 (173)
124 PF07200 Mod_r: Modifier of ru 38.8 2.6E+02 0.0056 25.7 9.0 72 57-146 68-141 (150)
125 PF00430 ATP-synt_B: ATP synth 38.0 2.7E+02 0.0059 24.4 8.7 41 39-79 21-61 (132)
126 cd07676 F-BAR_FBP17 The F-BAR 37.2 4.8E+02 0.01 26.8 14.5 49 30-78 78-141 (253)
127 PF01093 Clusterin: Clusterin; 36.8 53 0.0011 36.6 4.9 80 54-140 19-98 (436)
128 cd09238 V_Alix_like_1 Protein- 36.4 1.6E+02 0.0034 31.1 8.2 45 13-59 224-272 (339)
129 TIGR00634 recN DNA repair prot 36.2 3.5E+02 0.0077 30.3 11.2 128 20-161 249-386 (563)
130 PRK05759 F0F1 ATP synthase sub 36.2 1.9E+02 0.0041 26.5 7.7 30 50-79 37-66 (156)
131 PF06730 FAM92: FAM92 protein; 36.1 5.1E+02 0.011 26.8 14.3 139 18-159 64-209 (219)
132 cd07600 BAR_Gvp36 The Bin/Amph 35.3 2.9E+02 0.0063 28.5 9.6 118 15-143 110-232 (242)
133 PF14943 MRP-S26: Mitochondria 34.7 2.5E+02 0.0055 27.6 8.7 31 146-178 136-166 (170)
134 cd07653 F-BAR_CIP4-like The F- 34.4 4.6E+02 0.01 25.8 14.5 39 19-57 65-103 (251)
135 KOG0262 RNA polymerase I, larg 33.9 28 0.00061 43.3 2.5 47 103-149 1265-1311(1640)
136 cd08915 V_Alix_like Protein-in 33.7 81 0.0018 32.7 5.5 45 12-58 221-274 (342)
137 TIGR01069 mutS2 MutS2 family p 33.6 3.1E+02 0.0068 32.4 10.7 58 13-78 495-552 (771)
138 smart00030 CLb CLUSTERIN Beta 33.4 90 0.0019 31.9 5.5 78 56-139 27-104 (206)
139 cd07680 F-BAR_PACSIN1 The F-BA 33.3 5.8E+02 0.012 26.6 13.0 91 15-107 57-176 (258)
140 COG5283 Phage-related tail pro 32.8 1.7E+02 0.0036 36.6 8.5 102 45-164 68-169 (1213)
141 PHA00658 putative lysin 32.5 1.7E+02 0.0037 34.5 8.1 152 28-203 118-275 (720)
142 PF04803 Cor1: Cor1/Xlr/Xmr co 32.4 2.9E+02 0.0063 26.1 8.4 61 24-114 69-129 (130)
143 KOG1532 GTPase XAB1, interacts 31.8 65 0.0014 34.9 4.5 56 23-78 205-270 (366)
144 PRK14475 F0F1 ATP synthase sub 31.7 2.1E+02 0.0046 27.0 7.5 38 42-79 35-72 (167)
145 cd07609 BAR_SIP3_fungi The Bin 31.7 5.6E+02 0.012 26.0 12.2 126 27-155 30-163 (214)
146 cd07595 BAR_RhoGAP_Rich-like T 31.6 3.6E+02 0.0078 27.6 9.5 133 15-154 84-226 (244)
147 COG5124 Protein predicted to b 31.4 1.8E+02 0.0039 29.6 7.2 61 31-92 49-115 (209)
148 KOG3726 Uncharacterized conser 31.3 2.3E+02 0.0049 33.7 8.9 63 39-103 150-213 (717)
149 TIGR03321 alt_F1F0_F0_B altern 30.3 5.8E+02 0.013 25.7 11.9 38 42-79 30-67 (246)
150 PRK13453 F0F1 ATP synthase sub 30.3 4.9E+02 0.011 24.8 12.7 38 42-79 43-80 (173)
151 KOG4100 Uncharacterized conser 30.2 1.9E+02 0.004 27.7 6.6 42 30-82 29-71 (125)
152 cd07653 F-BAR_CIP4-like The F- 29.9 2.1E+02 0.0045 28.2 7.3 18 59-76 127-144 (251)
153 PF03962 Mnd1: Mnd1 family; I 29.5 5.6E+02 0.012 25.3 11.3 124 31-161 36-167 (188)
154 PF03357 Snf7: Snf7; InterPro 29.3 2.9E+02 0.0063 25.0 7.7 18 132-149 40-57 (171)
155 cd07607 BAR_SH3P_plant The Bin 29.2 6.6E+02 0.014 26.0 13.8 140 13-156 55-207 (209)
156 cd09237 V_ScBro1_like Protein- 28.9 1.5E+02 0.0033 31.2 6.6 49 10-60 227-283 (356)
157 PF10136 SpecificRecomb: Site- 28.5 3.8E+02 0.0083 31.5 10.1 101 26-144 188-291 (643)
158 PF12325 TMF_TATA_bd: TATA ele 28.5 5E+02 0.011 24.3 9.3 57 47-116 57-113 (120)
159 cd07655 F-BAR_PACSIN The F-BAR 28.4 4.1E+02 0.0089 27.0 9.3 38 19-56 64-101 (258)
160 KOG1265 Phospholipase C [Lipid 28.3 7.9E+02 0.017 30.7 12.6 123 16-147 1027-1164(1189)
161 PLN02413 choline-phosphate cyt 28.1 5.9E+02 0.013 27.5 10.6 31 69-102 164-194 (294)
162 PF00015 MCPsignal: Methyl-acc 27.4 5E+02 0.011 24.0 11.7 84 78-162 61-147 (213)
163 COG3416 Uncharacterized protei 26.9 1.4E+02 0.003 31.0 5.6 57 110-168 4-73 (233)
164 PF03978 Borrelia_REV: Borreli 26.7 3.5E+02 0.0077 26.9 8.1 94 35-137 49-147 (160)
165 PRK00106 hypothetical protein; 26.3 2.6E+02 0.0057 32.0 8.2 78 60-142 134-220 (535)
166 PF14723 SSFA2_C: Sperm-specif 26.2 5.8E+02 0.013 25.8 9.6 103 20-125 56-178 (179)
167 PRK12704 phosphodiesterase; Pr 26.0 2.7E+02 0.0059 31.5 8.2 75 62-141 121-204 (520)
168 KOG2077 JNK/SAPK-associated pr 25.9 2.2E+02 0.0047 33.6 7.4 140 18-160 3-153 (832)
169 PF08397 IMD: IRSp53/MIM homol 25.6 6.6E+02 0.014 24.8 12.1 27 50-76 82-109 (219)
170 PRK09174 F0F1 ATP synthase sub 25.5 3.2E+02 0.0069 27.2 7.8 32 49-80 85-116 (204)
171 KOG3130 Uncharacterized conser 25.5 1.1E+02 0.0023 34.5 4.9 38 148-185 243-282 (514)
172 PF12128 DUF3584: Protein of u 25.4 7.6E+02 0.017 30.6 12.4 55 100-157 740-795 (1201)
173 COG4847 Uncharacterized protei 25.3 1.6E+02 0.0034 27.3 5.1 40 34-82 57-96 (103)
174 PF09763 Sec3_C: Exocyst compl 25.0 4E+02 0.0087 30.6 9.5 92 32-127 84-179 (701)
175 cd00520 RRF Ribosome recycling 24.9 2.4E+02 0.0052 27.5 6.7 64 59-122 109-178 (179)
176 PF03915 AIP3: Actin interacti 24.8 9E+02 0.02 27.1 11.7 40 12-51 194-245 (424)
177 KOG2391 Vacuolar sorting prote 24.6 1.5E+02 0.0033 32.5 5.8 24 145-168 326-349 (365)
178 TIGR02956 TMAO_torS TMAO reduc 24.6 7.3E+02 0.016 28.6 11.4 56 23-78 191-247 (968)
179 PRK09835 sensor kinase CusS; P 24.5 6.3E+02 0.014 26.1 10.0 42 14-55 238-282 (482)
180 PF15003 HAUS2: HAUS augmin-li 24.4 3E+02 0.0065 29.4 7.7 111 51-173 47-167 (277)
181 PRK09173 F0F1 ATP synthase sub 24.1 3.1E+02 0.0068 25.5 7.1 30 50-79 35-64 (159)
182 cd02680 MIT_calpain7_2 MIT: do 23.4 2.9E+02 0.0063 23.9 6.2 53 61-117 16-69 (75)
183 PRK01919 tatB sec-independent 23.2 5.7E+02 0.012 25.6 8.9 27 19-45 27-53 (169)
184 cd07616 BAR_Endophilin_B1 The 23.2 3.2E+02 0.0069 28.1 7.5 118 15-143 96-219 (229)
185 KOG4672 Uncharacterized conser 23.0 76 0.0017 35.6 3.3 49 162-210 224-272 (487)
186 TIGR01144 ATP_synt_b ATP synth 22.9 2.3E+02 0.005 25.7 5.9 28 52-79 30-57 (147)
187 KOG1103 Predicted coiled-coil 22.4 8.5E+02 0.018 27.5 10.8 40 80-119 213-261 (561)
188 PF06371 Drf_GBD: Diaphanous G 22.3 4.1E+02 0.009 24.3 7.5 15 64-78 31-45 (187)
189 PF13807 GNVR: G-rich domain o 22.2 1.3E+02 0.0029 25.2 3.9 24 62-85 8-31 (82)
190 PRK08475 F0F1 ATP synthase sub 22.2 4.3E+02 0.0093 25.3 7.7 30 50-79 55-84 (167)
191 PRK14473 F0F1 ATP synthase sub 22.1 6.5E+02 0.014 23.5 13.4 29 51-79 42-70 (164)
192 KOG4759 Ribosome recycling fac 22.0 3.5E+02 0.0076 28.7 7.6 63 60-122 194-260 (263)
193 cd07652 F-BAR_Rgd1 The F-BAR ( 21.9 8.2E+02 0.018 24.6 10.2 42 17-59 63-104 (234)
194 PF00709 Adenylsucc_synt: Aden 21.9 92 0.002 34.5 3.6 90 45-142 69-170 (421)
195 PRK14474 F0F1 ATP synthase sub 21.7 8.8E+02 0.019 24.8 12.8 43 42-85 30-72 (250)
196 PF12252 SidE: Dot/Icm substra 21.7 9.4E+02 0.02 30.7 11.7 56 114-169 1249-1306(1439)
197 cd07651 F-BAR_PombeCdc15_like 21.6 3.6E+02 0.0079 26.6 7.4 21 57-77 120-140 (236)
198 KOG4643 Uncharacterized coiled 21.3 1.8E+03 0.038 28.2 14.7 73 100-172 534-610 (1195)
199 PF05055 DUF677: Protein of un 21.3 5.8E+02 0.013 27.6 9.2 92 62-160 222-319 (336)
200 KOG0982 Centrosomal protein Nu 21.3 6.3E+02 0.014 29.0 9.6 35 129-163 360-394 (502)
201 KOG2818 Predicted undecaprenyl 21.2 82 0.0018 33.2 2.9 32 128-160 38-69 (263)
202 KOG4425 Uncharacterized conser 21.0 1.3E+02 0.0029 34.7 4.6 53 431-486 61-116 (900)
203 PF04880 NUDE_C: NUDE protein, 20.9 94 0.002 30.6 3.1 43 72-124 3-45 (166)
204 PF05816 TelA: Toxic anion res 20.7 4.2E+02 0.0092 27.9 8.0 73 23-96 78-153 (333)
205 PRK00771 signal recognition pa 20.6 1.8E+02 0.0038 32.2 5.4 63 68-133 361-434 (437)
206 KOG3032 Uncharacterized conser 20.5 5.3E+02 0.012 27.4 8.4 78 57-171 155-233 (264)
207 PF10391 DNA_pol_lambd_f: Fing 20.4 28 0.00061 28.0 -0.5 26 143-168 17-42 (52)
208 PRK13428 F0F1 ATP synthase sub 20.3 3.5E+02 0.0076 29.8 7.6 27 53-79 37-63 (445)
209 cd06409 PB1_MUG70 The MUG70 pr 20.1 67 0.0014 28.5 1.7 31 149-179 17-53 (86)
210 PF06809 NPDC1: Neural prolife 20.0 1E+02 0.0022 33.6 3.4 25 187-218 293-317 (341)
No 1
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=100.00 E-value=3.5e-45 Score=353.50 Aligned_cols=156 Identities=24% Similarity=0.365 Sum_probs=144.5
Q ss_pred CCc-cccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHH-HHHHHHHHHHHHHHHH
Q 008054 1 MGS-CLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYV 77 (579)
Q Consensus 1 MGs-CLlEk~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~ve-emKkqcDekr~~YE~m 77 (579)
||+ || .+||+++|++|+|||++++||++|+++|++||+|||++|++|||| |||+|+ |||||||++|++||+|
T Consensus 49 LG~~~l-----~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~ 123 (215)
T cd07642 49 FGSNCV-----CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETK 123 (215)
T ss_pred Hhhccc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 577 88 468999999999999999999999999999999999999999999 999997 9999999999999999
Q ss_pred HHHHHhhccccCCCCCcchhH--------HHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhh
Q 008054 78 MAQQREKGKSKSGKGESVSLQ--------QQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGF 149 (579)
Q Consensus 78 ~a~~~EKgrsk~~K~e~~i~~--------~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGL 149 (579)
+ .++||+++|++|++++|++ ++|+.++.+|+.++..|+|+|++||+||+++|||++++|||||++||++||
T Consensus 124 ~-~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~ 202 (215)
T cd07642 124 V-TKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGL 202 (215)
T ss_pred H-HHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5999999999999999842 166777777777777777888899999999999999999999999999999
Q ss_pred hhhhhhhHHHHHH
Q 008054 150 KSLEAVDTHVRLV 162 (579)
Q Consensus 150 KsLE~lephVk~~ 162 (579)
++||+|+|||++|
T Consensus 203 k~le~l~p~~~~l 215 (215)
T cd07642 203 KAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999875
No 2
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=100.00 E-value=4.2e-39 Score=309.56 Aligned_cols=155 Identities=21% Similarity=0.320 Sum_probs=151.5
Q ss_pred cccccCC----CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHH-HHHHHHHHHHHHHHHHHH
Q 008054 6 MEKTSLD----DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 6 lEk~aln----dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~ve-emKkqcDekr~~YE~m~a 79 (579)
||++|.+ |+.|+|++||+|++|++||.+|++|++||++|+|+||++++|| |||.++ |+||+||+.|++||+++
T Consensus 46 le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl- 124 (213)
T cd07640 46 LENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKI- 124 (213)
T ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH-
Confidence 6888888 8899999999999999999999999999999999999999999 999999 99999999999999999
Q ss_pred HHHhhccccCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 80 QQREKGKSKSGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 80 ~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
.+.||+++...|++|+|+- +..+++++|+.|| +||+|.|| +|+.+|+.++|+.+++||+||++||++|++.+
T Consensus 125 ~K~ak~~r~k~~~~g~~~~-e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l 203 (213)
T cd07640 125 GKLEKERREKQKQHGLIRL-DMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAA 203 (213)
T ss_pred HHHhccccccchhcccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999 99999999 99999999999999999999999999999999
Q ss_pred hhhhHHHHHH
Q 008054 153 EAVDTHVRLV 162 (579)
Q Consensus 153 E~lephVk~~ 162 (579)
|.+.|+|+.|
T Consensus 204 ~~l~pyik~l 213 (213)
T cd07640 204 QNLGPFIEKL 213 (213)
T ss_pred HHHHhHhhcC
Confidence 9999999864
No 3
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=100.00 E-value=8.3e-35 Score=280.34 Aligned_cols=156 Identities=23% Similarity=0.359 Sum_probs=139.2
Q ss_pred CCccccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHH-HHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~ve-emKkqcDekr~~YE~m~ 78 (579)
||+|.+++ ||+++|.+|++||++++||.++++.|++||+++|++|+++++| ||+.|+ ||||+||++|++||.+.
T Consensus 49 ~g~~~~~~----~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~ 124 (215)
T cd07604 49 LGSKALSR----EEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKA 124 (215)
T ss_pred HhccccCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555432 5568999999999999999999999999999999999999999 699997 99999999999999997
Q ss_pred HHHHhhccccCCCCCcchhHHHH--HHHHHHHHHHH-----HHHHH--HhhhhccccchhHHHHHHHHHHHHHhhHHHhh
Q 008054 79 AQQREKGKSKSGKGESVSLQQQL--QAANDEYEEEA-----RLCVF--RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGF 149 (579)
Q Consensus 79 a~~~EKgrsk~~K~e~~i~~~ql--~~a~eE~eeEa-----~lc~f--rLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGL 149 (579)
+++||+|++.+|.+|+|++ ++ +++.++++.+| ++|.| +|++|+.+|..+||+++++||+||++||++|+
T Consensus 125 -~k~~k~Kk~~~~~~~~~r~-e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~ 202 (215)
T cd07604 125 -SKIEKEKKQLAKEAGMIRT-EITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGL 202 (215)
T ss_pred -HHHHhccchhhhhhhhcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888 76 36777777776 55555 45599999999999999999999999999999
Q ss_pred hhhhhhhHHHHHH
Q 008054 150 KSLEAVDTHVRLV 162 (579)
Q Consensus 150 KsLE~lephVk~~ 162 (579)
+.+|+++||++.|
T Consensus 203 ~ll~~l~p~~~~L 215 (215)
T cd07604 203 KVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHhhhhcC
Confidence 9999999999864
No 4
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=100.00 E-value=2.2e-33 Score=271.49 Aligned_cols=154 Identities=22% Similarity=0.358 Sum_probs=148.0
Q ss_pred ccccCC----CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHH-HHHHHHHHHHHHHHHHHHH
Q 008054 7 EKTSLD----DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVMAQ 80 (579)
Q Consensus 7 Ek~aln----dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~ve-emKkqcDekr~~YE~m~a~ 80 (579)
|++|-+ ||.++|.+|++|+++++||.++++++.+|++|+|+||++++|| |||.|+ |+||+||+.|++||+++ .
T Consensus 47 ~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~-~ 125 (215)
T cd07641 47 DKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKF-T 125 (215)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH-H
Confidence 455544 8899999999999999999999999999999999999999999 999999 99999999999999999 9
Q ss_pred HHhhccccCCCCCcchhHHHHH--HHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhh
Q 008054 81 QREKGKSKSGKGESVSLQQQLQ--AANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKS 151 (579)
Q Consensus 81 ~~EKgrsk~~K~e~~i~~~ql~--~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKs 151 (579)
+.||++++.+|.++++++ |+. |++++++.|| +||+|.|| .|+.+|+.++|+.++++++||++||++|++.
T Consensus 126 K~ek~~r~~~K~~e~~r~-e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~ 204 (215)
T cd07641 126 KIEKEKREHAKQHGMIRT-EITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKT 204 (215)
T ss_pred HHHhhhhhhcCcccchhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 887 8999999999 99999999 9999999999999999999999999999999
Q ss_pred hhhhhHHHHHH
Q 008054 152 LEAVDTHVRLV 162 (579)
Q Consensus 152 LE~lephVk~~ 162 (579)
+|.++|+|++|
T Consensus 205 ~~~l~py~k~l 215 (215)
T cd07641 205 ADKLKQYIEKL 215 (215)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 5
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.74 E-value=1.6e-17 Score=159.05 Aligned_cols=144 Identities=15% Similarity=0.233 Sum_probs=125.2
Q ss_pred ccccCC--CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008054 7 EKTSLD--DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQRE 83 (579)
Q Consensus 7 Ek~aln--dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~E 83 (579)
+.++-. ||+.++.+|..||.+-.||......+.+++.++|++|+++++| ||+.|+|+||.||+.|++|+..++.+.-
T Consensus 47 ~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~ 126 (200)
T cd07603 47 NDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQ 126 (200)
T ss_pred HHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444 8899999999999999999999999999999999999999999 9999999999999999999999843222
Q ss_pred hccccCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 84 KGKSKSGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 84 Kgrsk~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
=.|+ | .. +++|+..++.++| ++|.|-++ +|..+|..++|+-+..+.+||++||++|+..++.++
T Consensus 127 ~~K~---K-----~~-~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~ 197 (200)
T cd07603 127 APRS---K-----PQ-EAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLE 197 (200)
T ss_pred cCCC---C-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 2221 2 13 6777778888777 77888777 999999999999999999999999999999999999
Q ss_pred HHH
Q 008054 157 THV 159 (579)
Q Consensus 157 phV 159 (579)
|++
T Consensus 198 py~ 200 (200)
T cd07603 198 PYM 200 (200)
T ss_pred CcC
Confidence 974
No 6
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.72 E-value=3.8e-17 Score=158.45 Aligned_cols=135 Identities=13% Similarity=0.196 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES 94 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~ 94 (579)
-++.+|..|+++-.||....+.+.+|+.++|..|+++++| +|+.|+|.||+||+.|++|+..+ ||...-..|.
T Consensus 64 ~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~al----eK~l~l~~~k-- 137 (207)
T cd07634 64 SIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSIL----EKHLNLSAKK-- 137 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHH----HHHHhccccC--
Confidence 6999999999999999999999999999999999999999 99999999999999999999864 4443332222
Q ss_pred chhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 95 VSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 95 ~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
.+.++++|.++++.+| ++|.|-++ .+..+|..++|+-+..+.+||++||+.|+..++.++|+
T Consensus 138 --k~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py 206 (207)
T cd07634 138 --KESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPY 206 (207)
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence 1227889999999999 78999888 99999999999999999999999999999999999986
No 7
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.68 E-value=1.9e-16 Score=152.74 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=128.7
Q ss_pred ccccC--CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008054 7 EKTSL--DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQRE 83 (579)
Q Consensus 7 Ek~al--ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~E 83 (579)
+.++- .+|+.+|.+|..|+.+-.||....+.+..|+.++|..|+++++| ||+.|+|.||.||+.|+.||..+ .+..
T Consensus 47 ~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al-~K~~ 125 (200)
T cd07639 47 CDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAAL-QHNA 125 (200)
T ss_pred HHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHH-HHHh
Confidence 44554 37889999999999999999999999999999999999999999 99999999999999999999997 5666
Q ss_pred hccccCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 84 KGKSKSGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 84 Kgrsk~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
+.+++ ... +++|+.++++.+| ++|.|-++ .|..+|..++|+-+..+.+||+.||++|...++.++
T Consensus 126 ~~~k~-------k~~-e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~ 197 (200)
T cd07639 126 ETPRR-------KAQ-EVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALH 197 (200)
T ss_pred hcccc-------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55533 233 8999999999999 67778777 999999999999999999999999999999999999
Q ss_pred HH
Q 008054 157 TH 158 (579)
Q Consensus 157 ph 158 (579)
|+
T Consensus 198 ~y 199 (200)
T cd07639 198 QY 199 (200)
T ss_pred cc
Confidence 86
No 8
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.67 E-value=5.1e-16 Score=149.47 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=123.7
Q ss_pred cccccCC-CchHH----HHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 6 MEKTSLD-DDEES----RKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 6 lEk~aln-dd~e~----g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a 79 (579)
|+.++.+ ||+.+ |.+|..|+.+-.||....+.+++++.+.|.+|+++++| ||+.|+|.||+||+.|++||.-+.
T Consensus 45 L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~ 124 (202)
T cd07606 45 LEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARS 124 (202)
T ss_pred HHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 77777 46999999999999999999999999999999999999 999999999999999999999653
Q ss_pred --HHHhhccccCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhh
Q 008054 80 --QQREKGKSKSGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFK 150 (579)
Q Consensus 80 --~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLK 150 (579)
.++.|++ |. + +++++.++++.+| ++|.|-++ .|..+|..++|.-+..+.+||++||++|..
T Consensus 125 K~~~l~k~~----k~-----~-~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~e 194 (202)
T cd07606 125 KFLSLTKDA----KP-----E-ILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYE 194 (202)
T ss_pred HHHhccccC----ch-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 11 3 7888899999888 67777777 999999999999999999999999999999
Q ss_pred hhhhhhHH
Q 008054 151 SLEAVDTH 158 (579)
Q Consensus 151 sLE~leph 158 (579)
.+..++|+
T Consensus 195 ll~~l~py 202 (202)
T cd07606 195 LLRQLEPY 202 (202)
T ss_pred HHHhcCCC
Confidence 99999885
No 9
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.67 E-value=1.4e-15 Score=147.96 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=126.6
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHH--HHhhcccc
Q 008054 12 DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQ--QREKGKSK 88 (579)
Q Consensus 12 ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~--~~EKgrsk 88 (579)
.||+.++.+|..|+.+-.||......+++|+.++|.+|++.++| ||+.|+|+||.||+.|++||..+.. ++.|.
T Consensus 58 ~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~--- 134 (215)
T cd07601 58 RDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKK--- 134 (215)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC---
Confidence 38899999999999999999999999999999999999999999 9999999999999999999997632 23332
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhhh-hhhHHHH
Q 008054 89 SGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE-AVDTHVR 160 (579)
Q Consensus 89 ~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE-~lephVk 160 (579)
|.+. . +.+||.+|++.+| ++|.|-++ .|..+|..++|.-+..+.+||++||+.|.-.+. .++|+++
T Consensus 135 --k~~~---~-~~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~ 208 (215)
T cd07601 135 --RENT---K-VKIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLS 208 (215)
T ss_pred --CCch---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 2347888888888 78888888 999999999999999999999999999999996 9999999
Q ss_pred HHhhh
Q 008054 161 LVAER 165 (579)
Q Consensus 161 ~~ae~ 165 (579)
.|...
T Consensus 209 ~v~~~ 213 (215)
T cd07601 209 DINTS 213 (215)
T ss_pred HHHhh
Confidence 88653
No 10
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.63 E-value=4.6e-15 Score=129.14 Aligned_cols=141 Identities=21% Similarity=0.286 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC--C
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK--G 92 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLL-keLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K--~ 92 (579)
+.|.++..||.+.+||..+++.|.++|.+.|..|++.++ ++++.+++++|.||++|.+||.++ .+.++-+.+..+ .
T Consensus 51 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~-~k~~~~~~~~~~~~~ 129 (194)
T cd07307 51 DLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAR-EKLKKLRKKKKDSSK 129 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCChhH
Confidence 489999999999999999999999999999999999999 599999999999999999999998 555555443222 2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 93 ESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
-.-..+ ++++++++|+.-+..+...|..+..++..+++..+..+..+|+.||++|++.++.+.||
T Consensus 130 l~~~~~-~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~~ 194 (194)
T cd07307 130 LAEAEE-ELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLLPY 194 (194)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence 222344 88899999999999999999999999998888888888888999999999999998875
No 11
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=99.48 E-value=2.7e-13 Score=151.66 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=131.1
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC-
Q 008054 12 DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS- 89 (579)
Q Consensus 12 ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~- 89 (579)
-|++..|.+|..|.+|..|+-++++.|++++.++|.+|+.++.| ||+.|++.|++||++|++|+..+ .+..+-+++.
T Consensus 73 ~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~-~k~~~l~k~~~ 151 (785)
T KOG0521|consen 73 QDEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLAL-VKYSRLPKKRR 151 (785)
T ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHH-HHhhhhhhccc
Confidence 47889999999999999999999999999999999999999999 99999999999999999999998 6666665555
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhhc
Q 008054 90 GKGESVSLQQQLQAANDEYEEEARLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQH 167 (579)
Q Consensus 90 ~K~e~~i~~~ql~~a~eE~eeEa~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~h 167 (579)
.|...-..+ +|..++-.|+ .++|.|-+. -+..+|...+|+-+..+.+||.+||++|...++.++|+++.|+...|
T Consensus 152 ~~~~~e~~~-~l~~~r~~f~--~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ 228 (785)
T KOG0521|consen 152 SKVKTEVEE-ELAAARRKFQ--LTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQ 228 (785)
T ss_pred cchhHHHHH-HHHHHHHHHH--HHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHH
Confidence 443333333 4444444443 389999998 99999999999999999999999999999999999999999887654
No 12
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.47 E-value=6.4e-13 Score=120.08 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=134.0
Q ss_pred CccccccccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008054 2 GSCLMEKTSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQ 80 (579)
Q Consensus 2 GsCLlEk~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~ 80 (579)
|.||.+-.... ++...|.++.++|.+..+|....+.|...|..+|..|++.++++++.++++++.++++|-+|+... .
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~-~ 152 (229)
T PF03114_consen 74 ADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSAR-S 152 (229)
T ss_dssp HHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-H
Confidence 45665433332 344479999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred HHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHH
Q 008054 81 QREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 159 (579)
Q Consensus 81 ~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephV 159 (579)
+.+|.+.+..|... .+ +++++.++|+.....+.-.|-.|...+..-|...+..+..+|+.||++++..|+.+.|.+
T Consensus 153 k~~k~~~~~~~~~~--~~-~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 153 KLEKLRKKKSKSSK--EE-KLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHCHTTSSBTHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccc--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888877776655 55 999999999999988888888888777655559999999999999999999999999876
No 13
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.43 E-value=1.8e-12 Score=124.78 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=117.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+|+.+..+|-.||.+=.|+......+..++..+|..|+++++| ||+.|+|.||.||+.++.|+..++. . ...+. |
T Consensus 55 gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k-~--~~~k~-k 130 (200)
T cd07637 55 KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVK-N--AQAPR-H 130 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-H--hhcCC-C
Confidence 6788999999999999999999999999999999999999999 9999999999999999999998732 2 22221 2
Q ss_pred CCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHH
Q 008054 92 GESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 159 (579)
Q Consensus 92 ~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephV 159 (579)
.. . +++|+.+++.+.| +.|.|-++ .|..+|..++|.-+..+.+||++||++|...++.++|++
T Consensus 131 k~----~-~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 131 KP----H-EVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred Ch----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 11 2 5666666666666 45555554 999999999999999999999999999999999999974
No 14
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.05 E-value=1.9e-09 Score=104.54 Aligned_cols=139 Identities=15% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008054 12 DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG 90 (579)
Q Consensus 12 ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~ 90 (579)
.||+.+|.+|-.|+.+=.||.....-++.++..+|..|++..+| ||+.|+|.||.||+..+.|+.-+. |.-+=..
T Consensus 54 ~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~----K~~~~~k 129 (200)
T cd07638 54 SKDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALV----KNAQVQR 129 (200)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH----HhccCCc
Confidence 37779999999999999999999999999999999999999999 999999999999999999998762 2211111
Q ss_pred CCCcchhHHHHHHHHHHHHHHH-----HH--HHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHH
Q 008054 91 KGESVSLQQQLQAANDEYEEEA-----RL--CVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 159 (579)
Q Consensus 91 K~e~~i~~~ql~~a~eE~eeEa-----~l--c~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephV 159 (579)
|. .. +++|+.++..-.| .. .++-|..|..+|--.+|.-+..+-+||..||+.|.-.+..++|++
T Consensus 130 ~k----~~-e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py~ 200 (200)
T cd07638 130 NK----QH-EVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPYM 200 (200)
T ss_pred Cc----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 11 23 6666666666666 22 344555999999999999999999999999999999999999974
No 15
>smart00721 BAR BAR domain.
Probab=99.04 E-value=7.1e-09 Score=96.85 Aligned_cols=145 Identities=22% Similarity=0.284 Sum_probs=119.0
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLL-keLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
++...|.++.++|....++..+...+ .++...+..|+-.++ ++++.+.+..+.++.+|-+|+..+ .+.++-+.+..|
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~-~kl~~~~~~~~~ 166 (239)
T smart00721 89 ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSAR-HKLKKAKKSKEK 166 (239)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhccC
Confidence 56668999999999999999999999 888888777777666 599999999999999999999998 555554444333
Q ss_pred CC----cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 008054 92 GE----SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 160 (579)
Q Consensus 92 ~e----~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk 160 (579)
.. ....+ +++.+.++|++-...+.-.|-.|-......++..+..++.||++||+.|.+.|+.|.+.+.
T Consensus 167 ~~~~kl~~~e~-el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 167 KKDEKLAKAEE-ELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred ChhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32 11345 8889999999988777777777777777778999999999999999999999999998763
No 16
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=99.01 E-value=3.4e-09 Score=103.52 Aligned_cols=139 Identities=13% Similarity=0.183 Sum_probs=114.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHH--HHhhccccCCCCC
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQ--QREKGKSKSGKGE 93 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~--~~EKgrsk~~K~e 93 (579)
+|..|-.|+++..||..--+-+++|+...|..|++..+| +|+.|+|.||.||+..++|+..+.. ..-+.|++.-+.|
T Consensus 65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~E 144 (207)
T cd07635 65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQE 144 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHH
Confidence 468999999999999999999999999999999999999 9999999999999999999998754 2333333332222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 94 SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 94 ~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
. .. +|...+..|+..+-=.+|.|-.|..+|--++|.-+..+-+||..||+.|.-.++.++|+
T Consensus 145 A--~~-~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~y 206 (207)
T cd07635 145 A--DV-QVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNHY 206 (207)
T ss_pred H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 1 22 55555666666555556667799999999999999999999999999999999999885
No 17
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=98.98 E-value=1.4e-08 Score=99.92 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=124.6
Q ss_pred ccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008054 9 TSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGK 86 (579)
Q Consensus 9 ~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgr 86 (579)
|.+- ||+.++.+|-.|+++=.||.....-+..++..+|..|++..+| ||+.|+|.||.||+..++||..+.....=-|
T Consensus 54 f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk 133 (215)
T cd07631 54 FPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSK 133 (215)
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCC
Confidence 4444 8899999999999999999999999999999999999999999 9999999999999999999998754443222
Q ss_pred ccCCCCCcc---hhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhh-hhhhhhHHHHHH
Q 008054 87 SKSGKGESV---SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFK-SLEAVDTHVRLV 162 (579)
Q Consensus 87 sk~~K~e~~---i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLK-sLE~lephVk~~ 162 (579)
+.+.|-. ... ++...+.-|+.-|-=.++.|-.|..+|--++|.-+..+.+||..||+.|.- .+..++|+++.|
T Consensus 134 --~K~~E~~~eea~~-~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l 210 (215)
T cd07631 134 --RRENEKVKYEVTE-DVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNI 210 (215)
T ss_pred --CCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2223322 123 444555556544433455666999999999999999999999999999999 555999999998
Q ss_pred hhh
Q 008054 163 AER 165 (579)
Q Consensus 163 ae~ 165 (579)
+..
T Consensus 211 ~~~ 213 (215)
T cd07631 211 GTS 213 (215)
T ss_pred Hhh
Confidence 754
No 18
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=98.94 E-value=6.5e-09 Score=101.48 Aligned_cols=143 Identities=14% Similarity=0.203 Sum_probs=114.6
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHh--hccccC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQRE--KGKSKS 89 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~E--Kgrsk~ 89 (579)
|+..++.+|-.||.+=.||....+-+..++...|..|++...| +|+.|+|.||.||+..+.|+..+....- |.|+.+
T Consensus 61 De~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~ 140 (207)
T cd07602 61 DEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKEN 140 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch
Confidence 3345899999999999999999999999999999999999999 9999999999999999999998743332 222111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 90 GKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 90 ~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
-..|. .. +|..++-.|+..+-=.+|.|..|..+|--.+|.-+..+-+||+.||+.|.-.+..++|+
T Consensus 141 ~~~ea--~~-~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py 206 (207)
T cd07602 141 QLQEA--DA-QLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPY 206 (207)
T ss_pred HHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 11221 12 44444444555554455667799999999999999999999999999999999999987
No 19
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=98.94 E-value=1.6e-08 Score=100.11 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=129.0
Q ss_pred CCcccccccc-CCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTS-LDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~a-lndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
||.|+++-.. +++|...|.+|.++|.++..|-..-..|-.+|-..+..|+..+|. ||+.+---+|..+.+|-+|++.+
T Consensus 62 Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k 141 (244)
T cd07595 62 LAQSMLESSKELPDDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSAR 141 (244)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3556653322 237788999999999999999999999999999999999999996 99999999999999999999998
Q ss_pred HHHHhhccccC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 79 AQQREKGKSKS------GKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 79 a~~~EKgrsk~------~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
++..|-++.. +|. ..++. |+.++.++|++-...++-.+..+... -.+.+.+++.+..||++|+++++..|
T Consensus 142 -~r~~ka~k~~~~~~~~~K~-~~l~e-E~e~ae~k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L 217 (244)
T cd07595 142 -SRYNAAHKSSGGQGAAAKV-DALKD-EYEEAELKLEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVL 217 (244)
T ss_pred -HHHHhcccccccccccccc-chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655432 332 23566 89999999998875555555544433 46788899999999999999999999
Q ss_pred hhhhHHHHHHhh
Q 008054 153 EAVDTHVRLVAE 164 (579)
Q Consensus 153 E~lephVk~~ae 164 (579)
+.+-|-|+..-.
T Consensus 218 ~~l~~~l~~~~~ 229 (244)
T cd07595 218 EAVLPELQEQIE 229 (244)
T ss_pred HHHHHHHHHHHH
Confidence 999998876544
No 20
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=98.89 E-value=2.1e-08 Score=98.60 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=114.6
Q ss_pred cccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008054 8 KTSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKG 85 (579)
Q Consensus 8 k~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKg 85 (579)
.|++. ||+.++..|-.|+++=.||.....-+..++..+|..|++..+| ||+.|+|.||.||+-.+.|+..+.....=-
T Consensus 53 ~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Knaqls 132 (215)
T cd07632 53 NFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLP 132 (215)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCC
Confidence 46676 9999999999999999999999999999999999999999999 999999999999999999999885544433
Q ss_pred ccc-CCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 86 KSK-SGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 86 rsk-~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
|+| +-+.+.-.-. +|..++.-|..-+-=.+|-|-.|..+|--++|.-+..|.+||..||+.|.-.+
T Consensus 133 kkK~~E~~eae~~~-~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~ 199 (215)
T cd07632 133 KKRENEKVKAEVAK-EVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELF 199 (215)
T ss_pred cCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 2222222222 34455555554443344555599999999999999999999999999997544
No 21
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=98.89 E-value=2.3e-08 Score=98.18 Aligned_cols=146 Identities=21% Similarity=0.395 Sum_probs=120.6
Q ss_pred CCccccccccCC--CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD--DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 1 MGsCLlEk~aln--dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m 77 (579)
+|.|++ +.|.. +|...|.+|+++|.++.+|-..-..|...|-..+..|+..+|. |++.+-.-+|..+.+|=+|+++
T Consensus 69 Lg~~M~-~~g~elg~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~ 147 (223)
T cd07592 69 LGEVML-KYGRELGEDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYK 147 (223)
T ss_pred HHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466775 33333 7778999999999999999999999999999999999999876 9999999999999999999987
Q ss_pred HHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 78 MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 78 ~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
+ ++. +|. ..+ ||..+.++|++=...+.=+++.|.. .-.+-+.++..+=.||++||+++...|+.|.+
T Consensus 148 k-~k~-------~k~---~ee-El~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~ 214 (223)
T cd07592 148 K-RKQ-------GKG---PDE-ELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLDYHRQSAEILEELQS 214 (223)
T ss_pred H-Hhc-------ccC---chH-HHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 222 232 355 9999999999877666666665554 33567778888889999999999999999988
Q ss_pred HHH
Q 008054 158 HVR 160 (579)
Q Consensus 158 hVk 160 (579)
.+.
T Consensus 215 ~L~ 217 (223)
T cd07592 215 KLQ 217 (223)
T ss_pred HHH
Confidence 774
No 22
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=98.75 E-value=1.1e-07 Score=94.07 Aligned_cols=151 Identities=16% Similarity=0.302 Sum_probs=122.8
Q ss_pred CCccccccccCC--CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD--DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 1 MGsCLlEk~aln--dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m 77 (579)
||.|+++ .|.. .|...|.+|.++|.++..|-..-..|..+|...+..|+..+|. |++.+-.-.|..+.+|-+|++.
T Consensus 74 Lg~~M~~-~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~ 152 (229)
T cd07594 74 LGQAMIE-AGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDAC 152 (229)
T ss_pred HHHHHHH-HHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677763 3333 6788999999999999999999999999999999999999999 9999999999999999999998
Q ss_pred HHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 78 MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 78 ~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
. ++..|- |........++ +|..+.++|++=...+.=+++.|.... .+-|.++..+-.||++||+++...|+.|.+
T Consensus 153 k-~r~~kA--k~~~~~~~~e~-elr~Ae~kF~~~~E~a~~~M~~i~~~~-~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 227 (229)
T cd07594 153 K-TRVKKA--KSAEAIEQAEQ-DLRVAQSEFDRQAEITKLLLEGISSTH-ANHLRCLRDFVEAQMTYYAQCYQYMDDLQR 227 (229)
T ss_pred H-HHHhhc--CCccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 333222 22332345566 999999999998877777777665432 466788888889999999999999988754
No 23
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=98.75 E-value=1.3e-07 Score=92.62 Aligned_cols=138 Identities=18% Similarity=0.305 Sum_probs=116.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
+|...|.+|.++|.++..|-..-+.|..++..++..|++..|+|++++---.|..+.+|=+|++.+ ++..|-|+.
T Consensus 69 ~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~k-sk~~kak~~---- 143 (215)
T cd07593 69 QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAAL-TKSQKAKKE---- 143 (215)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccc----
Confidence 778899999999999999999999999999999999999888999999988999999999999997 566665433
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 93 ESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
+...++ +|..+.++|++=...+.=++..|...- .+-+.++..+=.||++||+++...|+.|.-
T Consensus 144 ~~~~ee-Elr~Ae~kfees~E~a~~~M~~i~~~e-~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 206 (215)
T cd07593 144 DSRLEE-ELRRAKAKYEESSEDVEARMVAIKESE-ADQYRDLTDLLDAELDYHQQSLDVLREVRQ 206 (215)
T ss_pred chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566 999999999988777777777665432 456778888889999999999999988753
No 24
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.70 E-value=2.2e-07 Score=91.03 Aligned_cols=144 Identities=13% Similarity=0.206 Sum_probs=114.3
Q ss_pred CchH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008054 13 DDEE-SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG 90 (579)
Q Consensus 13 dd~e-~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~ 90 (579)
||+. +..+|-.|+.+=.|+..-.+-+..++...|..|++.++| +|+.|+|-||+||+..+.|+..+.....=- +..
T Consensus 60 dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls--~k~ 137 (207)
T cd07636 60 DDEICIARSLQEFAAVLRNLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLS--SKK 137 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCc--ccC
Confidence 4444 789999999999999999999999999999999999999 999999999999999999999874333311 122
Q ss_pred CCC-cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 91 KGE-SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 91 K~e-~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
|.+ -.-..++|...+..|+..+==.+|.|-.|..+|--++|.-+..+.+||+.||+.|.-.++.++|+
T Consensus 138 K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~y 206 (207)
T cd07636 138 KESQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDF 206 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 221 11111244455555555554455666799999999999999999999999999999999999885
No 25
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.67 E-value=4.6e-07 Score=90.22 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=112.6
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008054 12 DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG 90 (579)
Q Consensus 12 ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~ 90 (579)
.||...|.+|+++|.++.+|-..=...-+.|......|+..+|+ +++.+-..+|..+.+|=+|+++++ +..|-+ +..
T Consensus 100 ~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~-~~~ka~-~~~ 177 (242)
T cd07600 100 EDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARA-ELKSAE-PAE 177 (242)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-ccc
Confidence 46889999999999999999997777778888888889999999 999999999999999999999983 332221 113
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 91 KGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 91 K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
|.+. .+. ++..+.+||++=....+=+++.|... ...+.++..+..||+.||+++.+.|+.|.+
T Consensus 178 k~~~-~~~-e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~ 240 (242)
T cd07600 178 KQEA-ARV-EVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLS 240 (242)
T ss_pred cccc-hHH-HHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 466 78888888877666666666655333 678999999999999999999999998765
No 26
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=98.66 E-value=4.6e-07 Score=90.64 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=123.8
Q ss_pred CCccccccccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
||-|++|-..-= +|-..|++|.+.|.++..|-.....+-.+|-..+.-|+-.+|. ||+.+---+|....+|-||++..
T Consensus 62 Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K 141 (246)
T cd07618 62 LAQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSAR 141 (246)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHH
Confidence 467876544322 6667999999999999999999999999999999999999999 99999999999999999999997
Q ss_pred HHHHhhccccC--------CCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhhhhccccchhHHHHHHHHHHHHHhhH
Q 008054 79 AQQREKGKSKS--------GKGESVSLQQQLQAANDEYEEEA-----RLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFF 145 (579)
Q Consensus 79 a~~~EKgrsk~--------~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF 145 (579)
++.++..+.. +|- ..+.+ |+.++.++||+.. .|+.|..++ ...+.+++.+-.||+.||
T Consensus 142 -~r~~~a~~~~~~~~~~~~~K~-~~l~e-e~e~a~~k~E~~kD~~~~dm~~~l~~e------~e~~~~l~~lv~aQ~eYH 212 (246)
T cd07618 142 -GRYNQAHKSSGTNFQAMPSKI-DMLKE-EMDEAGNKVEQCKDQLAADMYNFASKE------GEYAKFFVLLLEAQADYH 212 (246)
T ss_pred -HHHHhccccCccccccccchh-hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHH
Confidence 4444443222 121 12234 6777777777655 777786544 567888899999999999
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 008054 146 RKGFKSLEAVDTHVRLVAER 165 (579)
Q Consensus 146 rkGLKsLE~lephVk~~ae~ 165 (579)
++.+..||.+-|-|+.+.++
T Consensus 213 r~a~e~Le~~~p~i~~~~~~ 232 (246)
T cd07618 213 RKALAVIEKVLPEIQAHQDK 232 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 27
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=98.62 E-value=4.9e-07 Score=89.42 Aligned_cols=141 Identities=18% Similarity=0.310 Sum_probs=115.0
Q ss_pred CCccccccccCC--CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD--DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 1 MGsCLlEk~aln--dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m 77 (579)
||-|+++ .|-. +|...|.+|.++|.++..|-..-+.|..+|-..+--|++.++. ||+++---.|..+.+|=+|+++
T Consensus 69 Lg~~M~~-~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~ 147 (223)
T cd07613 69 LAEAMLK-FGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYK 147 (223)
T ss_pred HHHHHHH-HHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4667663 3333 7788999999999999999999999999999999999999775 9999999999999999999996
Q ss_pred HHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHH-----HHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 78 MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCV-----FRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 78 ~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~-----frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
. .+. +|. .++ ||..+.++|++=+..+. |+..+. +-+.++..+-.||++|++++...|
T Consensus 148 K--~r~------~k~---~ee-Elr~A~~kFees~E~a~~~M~n~l~~e~------e~~~~L~~fveAQl~Yh~qa~eiL 209 (223)
T cd07613 148 K--KRQ------GKI---PDE-ELRQALEKFDESKEIAESSMFNLLEMDI------EQVSQLSALVQAQLEYHKQATQIL 209 (223)
T ss_pred H--HhC------CCC---cHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 222 121 366 99999999998664444 655555 445688888899999999999999
Q ss_pred hhhhHHHH
Q 008054 153 EAVDTHVR 160 (579)
Q Consensus 153 E~lephVk 160 (579)
+.|.+-+.
T Consensus 210 ~~l~~~l~ 217 (223)
T cd07613 210 QQVTVKLE 217 (223)
T ss_pred HHHHHHHH
Confidence 99998875
No 28
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=98.62 E-value=5.1e-07 Score=89.56 Aligned_cols=150 Identities=13% Similarity=0.250 Sum_probs=117.9
Q ss_pred CCccccccccCC--CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD--DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 1 MGsCLlEk~aln--dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m 77 (579)
||-|++ +.|.+ .|-..|.+|+.+|.++..|-..-..|.+++-..+..|+.++|. ||+.+---.|..+.+|=+|++.
T Consensus 74 Lg~~M~-~~g~~~g~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~ 152 (229)
T cd07616 74 LGQYMI-DAGNEFGPGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAA 152 (229)
T ss_pred HHHHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466776 33433 7788999999999999999999999999888889999999998 9999998889999999999999
Q ss_pred HHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 78 MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 78 ~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
. ++.-|.|+...+. ...+ +|..+.+||++-...++=+++-|. .--.+-+.++..+-.||++||+++-..|+.|.
T Consensus 153 K-~r~~kAk~~~~~~--~~e~-elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 153 K-TRLKKAKVAEARA--AAEQ-ELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred H-HHHhcCCcchhhc--chHH-HHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4443443322221 2345 899999999987766666666665 22345778888888999999999988888764
No 29
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.61 E-value=4.8e-07 Score=90.72 Aligned_cols=157 Identities=16% Similarity=0.218 Sum_probs=120.5
Q ss_pred CCccccccccC-CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSL-DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~al-ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
+|-|++|-..- .+|...|++|.+.|.++..|-.-...+-.+|-..+.-|+-.+|. ||+++---+|....+|-+|++..
T Consensus 62 L~q~M~~~g~elg~~s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K 141 (248)
T cd07619 62 LAQCMVEGAAVLGDDSLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSR 141 (248)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHH
Confidence 46677643322 27888999999999999999999999999999999999999999 99999999999999999999987
Q ss_pred HHHHhhccccC--------CC-CCcchhHHHHHHHHHHHHHH-----HHHHHHHhhhhccccchhHHHHHHHHHHHHHhh
Q 008054 79 AQQREKGKSKS--------GK-GESVSLQQQLQAANDEYEEE-----ARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNF 144 (579)
Q Consensus 79 a~~~EKgrsk~--------~K-~e~~i~~~ql~~a~eE~eeE-----a~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~f 144 (579)
+++. ...++. ++ .+--+++ ++.++.++|+.. +.|+.|.=+++.+-. +++.+-.||+.|
T Consensus 142 ~r~~-~a~~~~~~~~~~~~~~~k~e~lr~-e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~------~l~~Lv~AQleY 213 (248)
T cd07619 142 TRWQ-QSSKSSGLSSNLQPTGAKADALRE-EMEEAANRMEICRDQLSADMYSFVAKEIDYAN------YFQTLIEVQAEY 213 (248)
T ss_pred HHHH-hccccccccccccCCCCccHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 4332 211110 11 1123444 555666666533 367778777776543 477888999999
Q ss_pred HHHhhhhhhhhhHHHHHHhhh
Q 008054 145 FRKGFKSLEAVDTHVRLVAER 165 (579)
Q Consensus 145 FrkGLKsLE~lephVk~~ae~ 165 (579)
+|+.+..||.+-|-|+.+.+.
T Consensus 214 Hr~A~eiLe~l~~~i~~~~~~ 234 (248)
T cd07619 214 HRKSLELLQSVLPQIKAHQEA 234 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887664
No 30
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=2.9e-07 Score=95.20 Aligned_cols=141 Identities=24% Similarity=0.377 Sum_probs=112.2
Q ss_pred Ccccccccc--CCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHH-HHHhhhHHHHHHHHHHHHHHHHHHH
Q 008054 2 GSCLMEKTS--LDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 2 GsCLlEk~a--lndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESL-LkeLk~veemKkqcDekr~~YE~m~ 78 (579)
|.|.+ |.| |.+|-..|.+|.++|+.-+|+-.+-+++.-|+.++.--|++.| ++|||.+.-=.|-.+..|-||+++.
T Consensus 89 g~~mi-k~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kk 167 (366)
T KOG1118|consen 89 GDVMI-KHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKK 167 (366)
T ss_pred HHHHH-HHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 56665 443 4488999999999999999999999999999999999999999 9999999965666899999999986
Q ss_pred HHHHhhccccCCCCCcchhHHHHHHHHHHHHH---HHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 79 AQQREKGKSKSGKGESVSLQQQLQAANDEYEE---EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 79 a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~ee---Ea~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
.+.-|.+ .+ +|..|.+-||| ++.+--|-||++.. +=+.|+.+.-.||++|||+.+.+|+.|
T Consensus 168 -kk~~K~~----------dE-elrqA~eKfEESkE~aE~sM~nlle~d~----eqvsqL~~Li~aqLdfhrqs~~iL~~l 231 (366)
T KOG1118|consen 168 -KKQGKIK----------DE-ELRQALEKFEESKELAEDSMFNLLENDV----EQVSQLSALIQAQLDFHRQSTQILQEL 231 (366)
T ss_pred -HHhccCC----------hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 44 77766666665 44555566776654 447899999999999999999999988
Q ss_pred hHHH
Q 008054 156 DTHV 159 (579)
Q Consensus 156 ephV 159 (579)
+-..
T Consensus 232 ~~~l 235 (366)
T KOG1118|consen 232 QMKL 235 (366)
T ss_pred HHHH
Confidence 7543
No 31
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=98.59 E-value=6.6e-07 Score=88.48 Aligned_cols=147 Identities=18% Similarity=0.332 Sum_probs=120.1
Q ss_pred CCccccccccC-CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSL-DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~al-ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
+|.|+++-... .+|...|.+|.++|.++..|-..-+.|..+|-..+..|+..+|. |++++---+|..+.+|=+|+++.
T Consensus 69 Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K 148 (223)
T cd07615 69 LGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKK 148 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666643222 27788999999999999999999999999999999999999975 99999999999999999999964
Q ss_pred HHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 79 AQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 79 a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
++. +|. .++ +++++.++|++=...++=+.+.|...- .+-+.++...-.||++|+++++..|+.|.+-
T Consensus 149 --~r~------~k~---~~e-E~~~A~~kfees~E~a~~~M~n~le~e-~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~ 215 (223)
T cd07615 149 --KRQ------GKI---PDE-EIRQAVEKFEESKELAERSMFNFLEND-VEQVSQLSVLIEAALDYHRQSTEILEDLQSK 215 (223)
T ss_pred --HcC------CCC---cHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 221 366 999999999987777777766665542 4567788888899999999999999999998
Q ss_pred HH
Q 008054 159 VR 160 (579)
Q Consensus 159 Vk 160 (579)
+.
T Consensus 216 l~ 217 (223)
T cd07615 216 LQ 217 (223)
T ss_pred HH
Confidence 75
No 32
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=98.56 E-value=9.6e-07 Score=87.28 Aligned_cols=146 Identities=19% Similarity=0.325 Sum_probs=118.2
Q ss_pred CCcccccccc-CCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTS-LDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~a-lndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
+|.|+++-.. +.+|...|.+|+++|.++..|-..-..|..+|-..+..|++.+|. |++.+---.|..+.+|=+|+++.
T Consensus 69 Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K 148 (223)
T cd07614 69 LGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKK 148 (223)
T ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677764332 227888999999999999999999999999999999999999995 99999999999999999999964
Q ss_pred HHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 79 AQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 79 a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
+ + .+|. ..+ +|..+.++|++=...+.=+++.|... -.+-+.++..+-.||++||+++...|+.|..-
T Consensus 149 ~--r------~~k~---~ee-elr~a~ekFees~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~ 215 (223)
T cd07614 149 K--R------QGKI---PDE-ELRQAMEKFEESKEVAETSMHNLLET-DIEQVSQLSALVDAQLDYHRQAVQILDELAEK 215 (223)
T ss_pred H--c------CCCC---chH-HHHHHHHHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1221 135 99999999998777777677666544 24667788888899999999999998888665
Q ss_pred H
Q 008054 159 V 159 (579)
Q Consensus 159 V 159 (579)
+
T Consensus 216 l 216 (223)
T cd07614 216 L 216 (223)
T ss_pred H
Confidence 5
No 33
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.54 E-value=1.5e-06 Score=87.73 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=125.2
Q ss_pred CCccccccccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 1 MGsCLlEk~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
+|.|++|-+.-= +|-..|+||-+-|..|..|....++|--+|=..|.-|+..|+. ||+.+---||+..+.|-||+++.
T Consensus 62 Ls~~M~es~keLg~dS~lg~aLe~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K 141 (257)
T cd07620 62 LSISMAESFKDFDAESSIRRVLEMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAK 141 (257)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHH
Confidence 467887766533 7789999998888888999999999999999999999999998 99999999999999999999998
Q ss_pred HHHHhhccc------------------cCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhhhhccccchhHHHHHH
Q 008054 79 AQQREKGKS------------------KSGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLKSLKQGQYRSLLTQAA 135 (579)
Q Consensus 79 a~~~EKgrs------------------k~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLKsLKqgq~rsLLtqaa 135 (579)
.++-...|+ -.+|.+. ..+ |+.++.+.||+.+ .|+-|.=|+. +...+++
T Consensus 142 ~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~-lke-E~eea~~K~E~~kd~~~a~Mynfl~kE~------e~a~~l~ 213 (257)
T cd07620 142 SRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEP-LKE-EEEECWRKLEQCKDQYSADLYHFATKED------SYANYFI 213 (257)
T ss_pred HHHHHhhccccCCccccccccccccccccccccc-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHH
Confidence 443222121 1244444 355 8999999999876 7888877765 4456778
Q ss_pred HHHHHHHhhHHHhhhhhhhhhHHHHH
Q 008054 136 RHHAAQLNFFRKGFKSLEAVDTHVRL 161 (579)
Q Consensus 136 RhhaAQl~fFrkGLKsLE~lephVk~ 161 (579)
++.-||++|.|+.|..||++-|-|+.
T Consensus 214 ~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 214 RLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999875
No 34
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.40 E-value=3.3e-06 Score=83.11 Aligned_cols=141 Identities=7% Similarity=0.064 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC-C
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG-E 93 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~-e 93 (579)
-++..|-.||.+=.|+..-.+.+..+...+|..|++..+| +++.++|-||+||+..+.|+..+.....=.. ..|. +
T Consensus 64 ~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~--k~K~~e 141 (207)
T cd07633 64 NIAESFKEFAELLQEVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSS--KKKESQ 141 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccc--cCCchH
Confidence 3889999999999999888888999999999999999999 9999999999999999999998733322211 1111 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 94 SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 94 ~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
-.-...+|...+..|...+==.+|.|-.|..+|--++|.-+-.+.+||..||+.|.-.+..++|+
T Consensus 142 ~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~y 206 (207)
T cd07633 142 LQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 00111133344444555444445566699999999999999999999999999999999998885
No 35
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=98.38 E-value=4.4e-06 Score=82.75 Aligned_cols=142 Identities=16% Similarity=0.286 Sum_probs=115.9
Q ss_pred CCccccccccCC--CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHH
Q 008054 1 MGSCLMEKTSLD--DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 1 MGsCLlEk~aln--dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m 77 (579)
||.|++ +.|.. .|...|.+|..+|.++..|-..=+.|..+|-.....|+..+|. ||+.+---.|..+.+|=+|++.
T Consensus 74 Lg~~M~-~~g~~~g~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~ 152 (220)
T cd07617 74 LGQYMT-EAANDFGPGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDAC 152 (220)
T ss_pred HHHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467776 44444 6778999999999999999999999999999999999999999 9999998888899999999998
Q ss_pred HHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 78 MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 78 ~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
.+ +.-| . .+ +|..+.++|++=..++.=.++.|...- .+-|.++..+-.||++||+++-..|+.|..
T Consensus 153 K~-r~~k-------a----e~-elr~A~~kf~~~~E~a~~~M~~il~~~-~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 153 KA-RLKK-------A----EH-ELRVAQTEFDRQAEVTRLLLEGISSTH-VNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HH-HHhc-------c----HH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 73 2211 1 34 899999999987776655555555432 366788889999999999999988887754
No 36
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.71 E-value=0.00066 Score=67.40 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=110.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008054 3 SCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 82 (579)
Q Consensus 3 sCLlEk~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~ 82 (579)
.||.+-...+++++...+--.+-.+..||...++.+.-.|..+|..|+..++.-...|.++-+.-+.|-.||+.++ .+.
T Consensus 53 ~~l~~~~~~~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r-~~~ 131 (225)
T cd07590 53 QDLASGPLCEDNDELRNLVEALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQ-AKV 131 (225)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHH
Confidence 4554433333555666666677778889999999999999999999999999999999999888899999999987 555
Q ss_pred hhccccCCCCC--cchh--HHHHHHHHHHHHHHHHHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 83 EKGKSKSGKGE--SVSL--QQQLQAANDEYEEEARLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 83 EKgrsk~~K~e--~~i~--~~ql~~a~eE~eeEa~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
+|=..|..|.. .-+. +++++.|.++|+.=-.++-=-|= .++..=+.-+++ -.+++|+.||..+-|.+..|
T Consensus 132 ~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fq---sl~~~Ql~f~~e~~k~~~~l 208 (225)
T cd07590 132 EKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFE---ALIKSQVLYYSQSTKIFTQL 208 (225)
T ss_pred HHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 55444444332 2122 12777777777765433222222 333343444444 45678999999999999999
Q ss_pred hHHHHHHhhh
Q 008054 156 DTHVRLVAER 165 (579)
Q Consensus 156 ephVk~~ae~ 165 (579)
.+.+..-+.+
T Consensus 209 ~~~~d~~~~~ 218 (225)
T cd07590 209 APNLDNPIEQ 218 (225)
T ss_pred HHhhcccccc
Confidence 9887654443
No 37
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=97.60 E-value=0.00097 Score=68.67 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=95.9
Q ss_pred ccccccc--cCCCchHHHHHHHHHHhHHHHHHHHHHHHHHh----hhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHH
Q 008054 3 SCLMEKT--SLDDDEESRKVLLMLGEVQFELQKLVDNYRSN----IFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCE 75 (579)
Q Consensus 3 sCLlEk~--alndd~e~g~vll~lgk~q~EL~kL~d~yr~n----I~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE 75 (579)
+++|+.+ ...|++-++.+|+.++.++.++ .++|-. |..-+..|+...|+ +++.+-..+|..+.+|-.|+
T Consensus 134 s~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I----~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D 209 (289)
T PF10455_consen 134 SEILEELKSSDEDEDPLSKALLKYSSAYEKI----AQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFD 209 (289)
T ss_pred HHHHHhcccCCCcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 3336578999999999998885 445433 44444558999999 99999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 76 YVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 76 ~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
.+++..+.+ .+-.|.+ -.+- +|..+-|||-.=..--+=..|++= ....+|..+.....||+.||++|.+.|+.+
T Consensus 210 ~~R~~~k~~--~~pekee-~~r~-~lE~aEDeFv~aTeeAv~~Mk~vl--~~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~ 283 (289)
T PF10455_consen 210 AARANLKNK--AKPEKEE-QLRV-ELEQAEDEFVSATEEAVEVMKEVL--DNSEPLRLLKELVKAQLEYHKKAAEALSEL 283 (289)
T ss_pred HHHHHhccc--CCcccCH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998443332 2333333 2344 566666666432211122223211 234455666777889999999999999887
Q ss_pred hH
Q 008054 156 DT 157 (579)
Q Consensus 156 ep 157 (579)
-.
T Consensus 284 ~~ 285 (289)
T PF10455_consen 284 LK 285 (289)
T ss_pred HH
Confidence 43
No 38
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=97.49 E-value=0.0051 Score=59.68 Aligned_cols=151 Identities=16% Similarity=0.258 Sum_probs=90.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHH----HHHHHHHHHH--HHHhhc
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDE----KRNVCEYVMA--QQREKG 85 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDe----kr~~YE~m~a--~~~EKg 85 (579)
.-.|+|.+|+.++.++++|...++.+...+...+..|+|.-+. +.+.+.++.|.|++ ++..++-+.. .+..|
T Consensus 52 ~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~K- 130 (219)
T PF08397_consen 52 GSKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRK- 130 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4679999999999999999999999999999999999999999 88888866665554 4444443321 11222
Q ss_pred cccCCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHhh-hh--ccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 008054 86 KSKSGKGESV--SLQQQLQAANDEYEEEARLCVFRLK-SL--KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 160 (579)
Q Consensus 86 rsk~~K~e~~--i~~~ql~~a~eE~eeEa~lc~frLK-sL--Kqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk 160 (579)
|++.||+... ..+ .++.+.+...+=-++|..=++ -| ..+++.-|+....-.-...+.|+-+|+..|...=+-..
T Consensus 131 K~~kgk~~~~~~~~~-~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~ 209 (219)
T PF08397_consen 131 KSRKGKDDQKYELKE-ALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ 209 (219)
T ss_dssp CCCCCTSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 2222454331 122 222222222221133333333 11 22445555555555555667777777777666555555
Q ss_pred HHhhh
Q 008054 161 LVAER 165 (579)
Q Consensus 161 ~~ae~ 165 (579)
.++..
T Consensus 210 ~~~~~ 214 (219)
T PF08397_consen 210 ELCSD 214 (219)
T ss_dssp HHTS-
T ss_pred HHhcC
Confidence 55443
No 39
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.10 E-value=0.0042 Score=57.21 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=97.5
Q ss_pred CccccccccCCCch---HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008054 2 GSCLMEKTSLDDDE---ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 2 GsCLlEk~alndd~---e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~ 78 (579)
|.|| ..++.-++. ..+.+|..||.+.-.+..+++....+...++..|+.-.+.-+..|+++=+.-+.++..|+...
T Consensus 45 g~~~-~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~ 123 (218)
T cd07596 45 GKAL-IKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLK 123 (218)
T ss_pred HHHH-HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 244444433 589999999999999999999999999999999999999999999988888888888887764
Q ss_pred HHHHhhccccCC-----------CCCcchhH-HHHHHHHHHHHHHHHHHHHHhh----hhccccchhHHHHHHHHHHHHH
Q 008054 79 AQQREKGKSKSG-----------KGESVSLQ-QQLQAANDEYEEEARLCVFRLK----SLKQGQYRSLLTQAARHHAAQL 142 (579)
Q Consensus 79 a~~~EKgrsk~~-----------K~e~~i~~-~ql~~a~eE~eeEa~lc~frLK----sLKqgq~rsLLtqaaRhhaAQl 142 (579)
...+|.+.+.. |.+.+..+ ++++...+...++...+..+++ .....+..+|-.-+..|=..|.
T Consensus 124 -~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi 202 (218)
T cd07596 124 -KDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQV 202 (218)
T ss_pred -HHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433211 11111100 0112222222333344444544 3333343333333333344588
Q ss_pred hhHHHhhhhhhhhhHH
Q 008054 143 NFFRKGFKSLEAVDTH 158 (579)
Q Consensus 143 ~fFrkGLKsLE~leph 158 (579)
.|+++.+...|.+.|+
T Consensus 203 ~~~~~~~~~W~~~~~~ 218 (218)
T cd07596 203 QYAEKIAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 8999998888887653
No 40
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=97.08 E-value=0.009 Score=58.93 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=86.8
Q ss_pred HHHHHH-HHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHH
Q 008054 27 VQFELQ-KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAAN 105 (579)
Q Consensus 27 ~q~EL~-kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~ 105 (579)
+-.||. .+++.+...|..+|..|+..+++-+..++.+=+..+.|+-||+... .+.+|=+.|..|.+ . .|..+.
T Consensus 77 ~v~~l~~~~~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~-~k~~kl~~K~~kd~----~-kL~kae 150 (224)
T cd07591 77 AVEELDAETVKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAAR-AKVRKLIDKPSEDP----T-KLPRAE 150 (224)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHH-HHHHHHHhcccCCH----H-HHHHHH
Confidence 335554 4566666667788889999999999999988888999999999987 77777666666654 2 344444
Q ss_pred HHHHHHHHHHHHHhhhhccc--c----chhHHHHH-HHHHHHHHhhHHHhhhhhhhhhHHHHHHhhh
Q 008054 106 DEYEEEARLCVFRLKSLKQG--Q----YRSLLTQA-ARHHAAQLNFFRKGFKSLEAVDTHVRLVAER 165 (579)
Q Consensus 106 eE~eeEa~lc~frLKsLKqg--q----~rsLLtqa-aRhhaAQl~fFrkGLKsLE~lephVk~~ae~ 165 (579)
+|+++-...++..=..|++- + ..++|..+ .-.+..|++||..+.+.|..+..+.-.-+.+
T Consensus 151 ~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~~~~~ 217 (224)
T cd07591 151 KELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDAQTRE 217 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 44444333333321111111 0 11233333 3456789999999999999988776554444
No 41
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.52 E-value=0.02 Score=56.71 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=63.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhhh---hhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchh
Q 008054 22 LMLGEVQFELQKLVDNYRSNIF---LTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSL 97 (579)
Q Consensus 22 l~lgk~q~EL~kL~d~yr~nI~---~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~ 97 (579)
+.|-+|..-|+.+...+...+. .+|..|++.++| +|+.++|.||.||+-.+.|+.+++.+..=.|+| ....++
T Consensus 63 ~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K---~p~~l~ 139 (214)
T cd07609 63 LALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTK---EPSSLR 139 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---Chhhhh
Confidence 4566666667766666665555 788999999999 999999999999999999999998777666665 222222
Q ss_pred HH--HHHHHHHHHHHHH
Q 008054 98 QQ--QLQAANDEYEEEA 112 (579)
Q Consensus 98 ~~--ql~~a~eE~eeEa 112 (579)
+. ||-+++..|-+.+
T Consensus 140 Eda~qL~e~Rk~Y~~aS 156 (214)
T cd07609 140 EDAFQLFEARKAYLKAS 156 (214)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 21 3335556665555
No 42
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=96.37 E-value=0.056 Score=51.41 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=104.6
Q ss_pred cccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008054 8 KTSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGK 86 (579)
Q Consensus 8 k~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgr 86 (579)
.+|.- .+..++.+|-.||.+...+..+.+....+...++..|+.-.+.-+.-|+++=++=+.+|..|+... ....|-|
T Consensus 70 ~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~-~~l~kkk 148 (236)
T PF09325_consen 70 QLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAE-KELQKKK 148 (236)
T ss_pred HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34443 334699999999999999999999999999999999999999999999999899999999998775 5555555
Q ss_pred ccCCCCCcc--hhHHHHHHHHHHHH----------HHHHHHHHHhh----hhccccchhHHHHHHHHHHHHHhhHHHhhh
Q 008054 87 SKSGKGESV--SLQQQLQAANDEYE----------EEARLCVFRLK----SLKQGQYRSLLTQAARHHAAQLNFFRKGFK 150 (579)
Q Consensus 87 sk~~K~e~~--i~~~ql~~a~eE~e----------eEa~lc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fFrkGLK 150 (579)
.+..|-.+- .+...+..+..|++ ++-..|.=++| .....+..+|=.-+..|=..|..+.++.++
T Consensus 149 ~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~ 228 (236)
T PF09325_consen 149 AQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLE 228 (236)
T ss_pred HHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332 22212222222222 22222333333 455667777777777777789999999999
Q ss_pred hhhhhhH
Q 008054 151 SLEAVDT 157 (579)
Q Consensus 151 sLE~lep 157 (579)
..|.+-|
T Consensus 229 ~We~~~~ 235 (236)
T PF09325_consen 229 AWETFLP 235 (236)
T ss_pred HHHhHcc
Confidence 9888754
No 43
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=95.81 E-value=0.23 Score=49.29 Aligned_cols=136 Identities=16% Similarity=0.092 Sum_probs=96.4
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc---hhH
Q 008054 22 LMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV---SLQ 98 (579)
Q Consensus 22 l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~---i~~ 98 (579)
-.+..+......+++.|-.-+..+|..|+..+++-...|..+=+-++.|.-||+..+ ...||=+.|..|.+.- ..+
T Consensus 68 ~~~~~v~e~~d~~~~~l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r-~~~~kL~~K~~kde~KL~kae~ 146 (211)
T cd07588 68 EHLASIFEQLDLLWNDLEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSAR-HNLEALKAKKKVDDQKLTKAEE 146 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHH-HHHHHHHhcccccHhhHHHHHH
Confidence 334566677888899999999999999999999999999988888899999999987 5555444433344432 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHH
Q 008054 99 QQLQAANDEYEEEARLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLV 162 (579)
Q Consensus 99 ~ql~~a~eE~eeEa~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ 162 (579)
+|+.|.++|+.--.++.--|= .++.+=...+++.++ ++|..||+.--|....|.--+..|
T Consensus 147 -el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~---~~q~~F~~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 147 -ELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIF---AAESVFHKEIGKVNTKLNDVMDGL 209 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777777766543332222 455555666666665 579999999888777776665554
No 44
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.12 Score=56.57 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=88.3
Q ss_pred HHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHhhccccCCCCCcchhHHHHHHHHHHHHHH
Q 008054 34 LVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA--QQREKGKSKSGKGESVSLQQQLQAANDEYEEE 111 (579)
Q Consensus 34 L~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a--~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeE 111 (579)
|+..|.+-|..+|-.|+.-+|+-...++.+=.--+.|-.||+.++. .+.++.++|..+...-.++ ||+.+.++||+-
T Consensus 98 l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAee-El~~Aq~~fE~l 176 (460)
T KOG3771|consen 98 LWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEE-ELEKAQQVFEEL 176 (460)
T ss_pred HHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHH-HHHHHHHHHHHH
Confidence 4566777888899999988887544444333333444448887762 2233333555555555666 888777777665
Q ss_pred HHHHH---HHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhhccccccc
Q 008054 112 ARLCV---FRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFS 173 (579)
Q Consensus 112 a~lc~---frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~hIDy~fS 173 (579)
-+++. ..|=+++++-++-+++.++ .+|++||+.+-|--+.|.-.+-++ .+||-|+-|+
T Consensus 177 N~~L~eELP~L~~sRv~f~vp~Fqsl~---~~q~vf~~Emskl~~~L~~v~~kl-~dqh~~~~~~ 237 (460)
T KOG3771|consen 177 NNELLEELPALYSSRVGFFVPTFQSLF---NLQLVFHKEMSKLYKNLYDVLDKL-FDQHSDKVFT 237 (460)
T ss_pred HHHHHHHHHHHHHhhhhhhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-hccccchhhh
Confidence 53322 2344889999999999875 689999999977767666655554 3566666665
No 45
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=95.71 E-value=0.1 Score=50.64 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=101.7
Q ss_pred cccCC-CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008054 8 KTSLD-DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGK 86 (579)
Q Consensus 8 k~aln-dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgr 86 (579)
++|.- .+..++.+|-.||.+...+..+....-.+...+...++.-.+.-+.-|+++=.+=.++|..|+..- ...+|-|
T Consensus 50 ~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~-~~L~k~~ 128 (216)
T cd07627 50 ALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAE-SELSKKK 128 (216)
T ss_pred HHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34433 357899999999999999999999999999999999999999999999988888889999999875 6677666
Q ss_pred ccCCCCCcc--hhHHHHH----------HHHHHHHHHHHHHHHHhh----hhccccchhHHHHHHHHHHHHHhhHHHhhh
Q 008054 87 SKSGKGESV--SLQQQLQ----------AANDEYEEEARLCVFRLK----SLKQGQYRSLLTQAARHHAAQLNFFRKGFK 150 (579)
Q Consensus 87 sk~~K~e~~--i~~~ql~----------~a~eE~eeEa~lc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fFrkGLK 150 (579)
.+..|-.+. ++.+-++ .+.++.+++-..|.=++| -.+..+-.++-..+..|=.+|..++++.++
T Consensus 129 ~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie 208 (216)
T cd07627 129 AQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIE 208 (216)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444321 1111222 222222222233333333 445566666766777777778888887766
Q ss_pred hhhhh
Q 008054 151 SLEAV 155 (579)
Q Consensus 151 sLE~l 155 (579)
.-|++
T Consensus 209 ~We~f 213 (216)
T cd07627 209 LWETF 213 (216)
T ss_pred HHHHH
Confidence 66554
No 46
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.69 E-value=0.35 Score=46.70 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV 95 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~ 95 (579)
+++.+|-.||.+--.+..+++....+......-|+-..+.=...|+..=+.=|.++.+||... .++.|.|-+
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~-e~L~~k~~~------- 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSV-EELNKKRLE------- 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------
Confidence 467777777766555666666666666555556666655555666655556677888999875 566665544
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 96 SLQQQLQAANDEYEEEARLC---VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa~lc---~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
+.. +++++.++||.=..-+ +=|.+..|+.-+++.|.. |=-.|..|++++++.-|.+-|
T Consensus 139 l~~-ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~---~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 139 LLK-EVEKLQDKLECANADLKADLERWKQNKRQDLKKILLD---MAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcC
Confidence 444 7777777776433222 224445555555555544 445788999999998888765
No 47
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=95.57 E-value=0.24 Score=47.84 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=82.2
Q ss_pred HHHhHHHHH-HHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHH
Q 008054 23 MLGEVQFEL-QKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQL 101 (579)
Q Consensus 23 ~lgk~q~EL-~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql 101 (579)
.+..+..++ ..++..|...|-.++..|+..|++=+..+..+=+-.+.|.-||+... .+.+|+ +| ..+ ++
T Consensus 66 ~~~~~~~~~~~~~~~e~~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~-~~~~k~----~k----~e~-~l 135 (195)
T cd07589 66 RFRRVVRGISSKALPEFKSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYK-EKKERG----GK----VDE-EL 135 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHH-HHHHhh----cc----hHH-HH
Confidence 333444444 34788999999999999999999999999977777788888999876 555652 22 334 78
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHhhHHHhhhhhhhhhHHH
Q 008054 102 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAA-RHHAAQLNFFRKGFKSLEAVDTHV 159 (579)
Q Consensus 102 ~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaa-RhhaAQl~fFrkGLKsLE~lephV 159 (579)
+++.++|+.--....=-|=-|-+.. ..||+... -+...|++||+..++-+ .+-||+
T Consensus 136 ~~a~~~y~~lN~~L~~ELP~l~~~~-~~~l~~~~~s~~~~Q~~~~~~~~~~~-~~~p~~ 192 (195)
T cd07589 136 EEAANQYEALNAQLKEELPKFNQLT-AQLLETCLKSFVELQRDLYDTLLKRA-ELLPLL 192 (195)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-cccccc
Confidence 8888888754322221221222222 23444443 45567999999988865 344443
No 48
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=94.93 E-value=0.66 Score=46.45 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcch--hHHHHHHHHHHHH
Q 008054 32 QKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDEYE 109 (579)
Q Consensus 32 ~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i--~~~ql~~a~eE~e 109 (579)
..+|+.|..-++..|-.|++.+++=...|.++=+-=+.|--||+.++ ...||=.-|.+|.+.=+ .+++|+.|.++|+
T Consensus 78 d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r-~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye 156 (211)
T cd07611 78 DLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSAR-HHLEALQTSKRKDEGRIAKAEEEFQKAQKVFE 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888999999999988888877666677888999998 77777766667776632 2336777777776
Q ss_pred HHHHHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhh
Q 008054 110 EEARLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE 164 (579)
Q Consensus 110 eEa~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae 164 (579)
.=-.++---|= .++.+=+...++.++ .+|+.||+.--|.-..|.--|..|++
T Consensus 157 ~lN~~Lk~ELP~L~~~Ri~f~~psFeal~---~~q~~f~~E~~k~~~~l~~~~~~l~~ 211 (211)
T cd07611 157 EFNVDLQEELPSLWSRRVGFYVNTFKNVS---SLEAKFHKEISVLCHKLYEVMTKLGE 211 (211)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 54422222221 455566666666665 58999999988888888887777764
No 49
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=94.78 E-value=0.93 Score=46.22 Aligned_cols=144 Identities=12% Similarity=0.174 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhH----HHHHHHHHHHHHHHHHHHH--HHHhhcc
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTV----EDMKRQCDEKRNVCEYVMA--QQREKGK 86 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~v----eemKkqcDekr~~YE~m~a--~~~EKgr 86 (579)
--|+|.+|..+..++++|..-++.+-..+.+-...|+|.=+. +-|.+ ||-++.|++.|.+..-+-. .+.+|.-
T Consensus 66 SkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~ 145 (231)
T cd07643 66 TKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKA 145 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 459999999999999999999999999999999999998877 33333 3667778887765543221 2345444
Q ss_pred ccCCCCCcchhHHHHHHHHH----------HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 87 SKSGKGESVSLQQQLQAAND----------EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 87 sk~~K~e~~i~~~ql~~a~e----------E~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
+|.+.+ +.+ ||..+.. |+|+.+ |.--++- .-+|+-.|++++--....|++++-. +..|+.+-
T Consensus 146 rKg~~~---~~~-~ldsa~~dvn~k~~~lEe~ek~a-lR~aLiE--ER~Rfc~Fvs~l~pVl~~e~~ml~E-~~hl~~~~ 217 (231)
T cd07643 146 RKGKGD---LQP-QLDSAMQDVNDKYLLLEETEKKA-VRNALIE--ERGRFCTFVSFLKPVLDEEISMLGE-VTHLQTIM 217 (231)
T ss_pred hccCCc---cch-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHhh-HHHHHHHH
Confidence 443322 333 4443332 333222 1111111 2245555666666667778888877 66666666
Q ss_pred HHHHHHhhh
Q 008054 157 THVRLVAER 165 (579)
Q Consensus 157 phVk~~ae~ 165 (579)
..+..++..
T Consensus 218 ~~l~~~t~~ 226 (231)
T cd07643 218 EDLASLTAD 226 (231)
T ss_pred HHHHHHhcC
Confidence 666655544
No 50
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=94.55 E-value=1.2 Score=43.11 Aligned_cols=129 Identities=19% Similarity=0.096 Sum_probs=81.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccc---CCCCCcc
Q 008054 20 VLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREK-GKSK---SGKGESV 95 (579)
Q Consensus 20 vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EK-grsk---~~K~e~~ 95 (579)
..-.+..+-.+|..-+......|-.++..|+..+++-+..|..+=+..+.|+-||+... .+.|| -+.+ ..|.+.
T Consensus 72 ~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~-~k~~k~~~~k~~~~~kd~~- 149 (216)
T cd07599 72 RLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQ-NKLNKLLQKKKELSLKDEK- 149 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhcCCCCChhHHH-
Confidence 33445555566666666677777888999999999999999988888999999999987 66777 3333 233322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhccc------cchhHHHHH-HHHHHHHHhhHHHhhhhhhh
Q 008054 96 SLQQQLQAANDEYEEEARLCVFRLKSLKQG------QYRSLLTQA-ARHHAAQLNFFRKGFKSLEA 154 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa~lc~frLKsLKqg------q~rsLLtqa-aRhhaAQl~fFrkGLKsLE~ 154 (579)
+|..+.+++++-...+++.=..||.- ...++++.+ ..++..|++||...-..|+.
T Consensus 150 ----kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~ 211 (216)
T cd07599 150 ----QLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQE 211 (216)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444443333332222221 123445444 34556799999987766654
No 51
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.32 E-value=0.73 Score=44.29 Aligned_cols=124 Identities=11% Similarity=0.145 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV 95 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~ 95 (579)
++|.+|-.||..--.+.+..+.+...+....-.|+-.++.=...++.+=+.=|.|+-+||... .++
T Consensus 58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~-e~l------------- 123 (185)
T cd07628 58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELS-DYL------------- 123 (185)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHH-------------
Confidence 366666666655555555555555555555555555555545556655566677888999875 444
Q ss_pred hhHHHHHHHHHHHHHHH-HHH--HHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 96 SLQQQLQAANDEYEEEA-RLC--VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa-~lc--~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
... +++++++.|+.=- .|. .-|.+..|+.-.++.|..+|. +|-.||+++++.-|.+.|
T Consensus 124 l~~-~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~---~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 124 LTD-EVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALAD---GHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcC
Confidence 223 5555555554322 111 224456666666666666555 567899999988888765
No 52
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=93.85 E-value=0.56 Score=46.07 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC---
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG--- 90 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~--- 90 (579)
....+++|-.||.+.-.+..+....-.+-+.+...++.--+.-+.-|++.=.+=-+.|..|.+.- ....|-|.+..
T Consensus 65 ~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~-~~l~kkr~~~~Kl~ 143 (224)
T cd07623 65 HTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQ-QTLTKKREAKAKLE 143 (224)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999888888888888888876666666666666553 33333333322
Q ss_pred ---CCCcch--hHHHHH---HHHHHHHHHHHHHHHHhh----hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 91 ---KGESVS--LQQQLQ---AANDEYEEEARLCVFRLK----SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 91 ---K~e~~i--~~~ql~---~a~eE~eeEa~lc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
|.+-+- .. +++ ...++.+++-.-+.+++| -.+..+-.++=..+..|=..|..+.++-++..|.+-|.
T Consensus 144 ~~~~~~K~~~~~~-ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe 222 (224)
T cd07623 144 LSGRTDKLDQAQQ-EIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPE 222 (224)
T ss_pred hcCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 222111 11 232 333444555556666666 45667777888888888888999999988888888764
No 53
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=93.76 E-value=1 Score=45.21 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcch--hHHHHHHHHHHHH
Q 008054 32 QKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDEYE 109 (579)
Q Consensus 32 ~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i--~~~ql~~a~eE~e 109 (579)
..+++.|..-+..++..|++.+++=...|.++=+-=+.|--||+.++ .+.+|-+-+..|.+.=+ .+++|+.|.++|+
T Consensus 78 d~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R-~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye 156 (211)
T cd07612 78 DLLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSAR-HHLEALQNAKKKDDAKIAKAEEEFNRAQVVFE 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999988888866666677777998887 56666655544555422 2236777777776
Q ss_pred HHHHHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHh
Q 008054 110 EEARLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA 163 (579)
Q Consensus 110 eEa~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~a 163 (579)
.--.++-=-|= .++.+=+...++.++ .+|..||+.--|....|.--+..|+
T Consensus 157 ~lN~~L~~ELP~L~~~Ri~f~~psFeal~---~~q~~F~~E~~k~~~~l~~~~~~l~ 210 (211)
T cd07612 157 DINRELREELPILYDSRIGCYVTVFQNIS---NLRDTFYKEMSKLNHDLYNVMKKLE 210 (211)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65433222222 667777777787776 4899999998888777777666553
No 54
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=93.71 E-value=0.92 Score=47.09 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=69.7
Q ss_pred ccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008054 9 TSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREKGKS 87 (579)
Q Consensus 9 ~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EKgrs 87 (579)
.|.+.|++++.|.-+||+.-+|+-.+.+.|..+.-.. -.-||.++..| .+-.-=|.|+++- ..| +++++...
T Consensus 90 WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~y-----R~~LK~IR~~E~sl~p~R~~r~~l~-d~I-~kLk~k~P 162 (271)
T PF13805_consen 90 WGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQY-----RIHLKSIRNREESLQPSRDRRRKLQ-DEI-AKLKYKDP 162 (271)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHH-T
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHhHHHH-HHH-HHHHhcCC
Confidence 4566788999999999999999999999999986543 56788888888 5544444444443 333 33333333
Q ss_pred cCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHhhhhcc
Q 008054 88 KSGKGESVSLQQQLQ-AANDEYEEEARLCVFRLKSLKQ 124 (579)
Q Consensus 88 k~~K~e~~i~~~ql~-~a~eE~eeEa~lc~frLKsLKq 124 (579)
++.|-. ..+|||. .-+|.+-.||+|-.|.=..||.
T Consensus 163 ~s~kl~--~LeqELvraEae~lvaEAqL~n~kR~~lKE 198 (271)
T PF13805_consen 163 QSPKLV--VLEQELVRAEAENLVAEAQLSNIKRQKLKE 198 (271)
T ss_dssp TTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHH--HHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Confidence 333322 2334666 6677788888887665444443
No 55
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=93.32 E-value=2.2 Score=42.92 Aligned_cols=138 Identities=16% Similarity=0.238 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHH----HHHHHHHHHHHHHHHHHHHhhcccc
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDM----KRQCDEKRNVCEYVMAQQREKGKSK 88 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veem----KkqcDekr~~YE~m~a~~~EKgrsk 88 (579)
--++|.||+.+..++++++.=++..-..+.+-+..|+|.=+. +-|.|..+ ++++..+|.+++-.. ....|-++|
T Consensus 63 sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~-sel~Kl~KK 141 (223)
T cd07605 63 SQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKAR-SELKKLQKK 141 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 359999999999999999999998888888999999888777 66666544 445555556777654 334444443
Q ss_pred CCC-CCcchhHHHHHHHHHHHHHH-HHHHHHHhhh------hccccchhHHHHHHHHHHHHHhhHHHhhhhhh
Q 008054 89 SGK-GESVSLQQQLQAANDEYEEE-ARLCVFRLKS------LKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE 153 (579)
Q Consensus 89 ~~K-~e~~i~~~ql~~a~eE~eeE-a~lc~frLKs------LKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE 153 (579)
..| +-+-... ++.++.+++.+- ..|=.|.-.+ -..+++.-|+....-.....++||-+|-..|.
T Consensus 142 s~~~~~~k~~~-~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~ 213 (223)
T cd07605 142 SQKSGTGKYQE-KLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLS 213 (223)
T ss_pred HcccCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1121222 233333332221 1222222221 12345555555555555555666655544443
No 56
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=93.05 E-value=1.3 Score=44.58 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=97.3
Q ss_pred ccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008054 9 TSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK 88 (579)
Q Consensus 9 ~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk 88 (579)
+|.-++...+++|-.||.+.--+.++...-.++-..+...++.--+..++-+++|=-+==+.|..|++-- .-.+|-|-+
T Consensus 71 L~~~E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~-k~L~KaR~k 149 (219)
T cd07621 71 LATSEPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENAN-KNLEKARAK 149 (219)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhc
Confidence 3333557899999999999999999999888888888888888888889999988888888999999864 677777765
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHH-----HHHHHH---hhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 89 SGKGESVSLQQQLQAANDEYEEEA-----RLCVFR---LKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 89 ~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~fr---LKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
+.+-.. ... ..+++.++||+=. .|--|. .+.+| .-...++.-.+||-.+|..+++.+|..|
T Consensus 150 ~~~v~~-AE~-~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk-~~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 150 NKDVHA-AEA-AQQEACEKFESMSESAKQELLDFKTRRVAAFR-KNLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred hhhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 533211 122 3345555555433 222222 22222 1234566667889999999999987654
No 57
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=93.00 E-value=1.1 Score=44.97 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh-----HHHH---HHHHHHHHHHHHHHHHHHHhhc
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRT-----VEDM---KRQCDEKRNVCEYVMAQQREKG 85 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~-----veem---KkqcDekr~~YE~m~a~~~EKg 85 (579)
+++.|..|..+|++++=+.+- -.++-.|+.-+++||.| ++|. =++|+..|-.|..-+...+|-.
T Consensus 86 ~~~l~~~f~~~~~~~~~~~~~--------~~~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~ 157 (229)
T PF06456_consen 86 SPALGEEFSANGEAQRSLAKQ--------GETLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMS 157 (229)
T ss_dssp -CCGHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666664433222 12233345555555544 4443 4688899999988774333332
Q ss_pred ---cccCCCCCcchhHH--HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhh
Q 008054 86 ---KSKSGKGESVSLQQ--QLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFK 150 (579)
Q Consensus 86 ---rsk~~K~e~~i~~~--ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLK 150 (579)
-...++++.-.+.. +++++++-|++-+.=+.-.|+-|-+.+-..|=.|+.++|.|=.+||.+.-.
T Consensus 158 ~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~ 227 (229)
T PF06456_consen 158 DELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQ 227 (229)
T ss_dssp --TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33445655555542 445899999999988888899999999999999999999999999987543
No 58
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.58 E-value=6.1 Score=39.30 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=81.1
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHH-HHHHHHH--HHHhhccc
Q 008054 12 DDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVE-DMKRQCDEKRN-VCEYVMA--QQREKGKS 87 (579)
Q Consensus 12 ndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~-~YE~m~a--~~~EKgrs 87 (579)
.+++..+.+|-.|+.+..=++.+.+.-...+..++..|+..-..-.+.++ ++|. |. .|...+. .+.||=|.
T Consensus 54 ~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~-----~~~ar~~~~~~~~~leklk~ 128 (211)
T cd07598 54 TENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKN-----TFTARNKELKQLKQLEKLRQ 128 (211)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777555555555555566677777777766666666666 6653 22 2332221 34444443
Q ss_pred cCCCCCcch--hHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 008054 88 KSGKGESVS--LQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 160 (579)
Q Consensus 88 k~~K~e~~i--~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk 160 (579)
+++-....| -+.+|+.+..+|++=.....=-+--..+.+-.+|=.-+..|-.+||.|..+.|+.+=++-..|.
T Consensus 129 ~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~ 203 (211)
T cd07598 129 KNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQ 203 (211)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332111122 2337777777777654222222222234555566667778888899988888776655554443
No 59
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=91.44 E-value=3 Score=41.77 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=82.6
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHh-hcccc
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVED---MKRQCDEKRNVCEYVMAQQRE-KGKSK 88 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~vee---mKkqcDekr~~YE~m~a~~~E-Kgrsk 88 (579)
.+++...+|.|+|.+|+=|.+--..+...|+-.|+ -++-|++ |+++| .=++|+-.|-.|..-+....| +-...
T Consensus 52 k~p~l~~af~~~aet~k~l~kng~~Ll~al~~f~s-~l~T~~~--kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~ 128 (201)
T cd07660 52 KSPELQEEFTYNAETQKLLCKNGETLLGALNFFVS-SLNTLVN--KTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPR 128 (201)
T ss_pred cChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHH--hhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCC
Confidence 34666777777777766555443333322211100 0011111 12222 346777788888776632222 11111
Q ss_pred C----CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 89 S----GKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 89 ~----~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
. .|-+. ... +++++++-|++-|.=..--|+=|.+.+-..+-.|+.++|.|-.-||...-+.||..
T Consensus 129 ~~~~l~r~~~-~q~-~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~ 197 (201)
T cd07660 129 DAATSARLEE-AQR-RFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQT 197 (201)
T ss_pred ccchHhhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1 11222 222 56799999999995555577789999999999999999999999999877776653
No 60
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=90.50 E-value=6 Score=36.56 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRT-VEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES 94 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~-veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~ 94 (579)
-...++..|...+..+......+..+|.+.|.-|++.+.+..+. .+......++.-+.|.... +..+| .++.+-
T Consensus 54 t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~-~~~~k----k~~~~y 128 (191)
T cd07610 54 SLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKEDKEQARKKELAEGEKLKKKLQELW-AKLAK----KADEEY 128 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hhHHHH
Confidence 56788888888889999999999999999999999888886666 4466666666777777666 55555 222222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHH
Q 008054 95 VSLQQQLQAANDEYEEEARLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRK 147 (579)
Q Consensus 95 ~i~~~ql~~a~eE~eeEa~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrk 147 (579)
....+++...+.+|.++..-|...+. +.....-+++|.+.+.+....+..+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~~~~~l~~~~~~~~~~~~~~~~ 184 (191)
T cd07610 129 REQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLKNYINAIKEIPQKIQQ 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 22222555888888887755555444 233333445555555555555544433
No 61
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=89.88 E-value=6.2 Score=38.85 Aligned_cols=92 Identities=20% Similarity=0.084 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV 95 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~ 95 (579)
.++++|..||.++-.+.++.+.--++-..|...+++--+..++-|++|=-+=-.+|..|+.-- .-++|.|.+ |.+ .
T Consensus 61 ~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~-k~l~Kar~~--k~~-~ 136 (198)
T cd07630 61 ALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENAS-KALEKAKPQ--KKE-Q 136 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHh--hHH-H
Confidence 779999999999999999999999999999999999999999999988877778888999874 677776543 322 2
Q ss_pred hhHHHHHHHHHHHHHHH
Q 008054 96 SLQQQLQAANDEYEEEA 112 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa 112 (579)
... ..+++..+|++=.
T Consensus 137 ae~-~~~~a~~~fe~iS 152 (198)
T cd07630 137 AEE-AKKKAETEFEEIS 152 (198)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 222 4455666665533
No 62
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=86.70 E-value=25 Score=35.89 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHH---HHHHHHHHHHHHHHHHHHHhh---cc
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDM---KRQCDEKRNVCEYVMAQQREK---GK 86 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veem---KkqcDekr~~YE~m~a~~~EK---gr 86 (579)
.++...+|..+|..|+-|.|---. +...|.|-+.+|=- ==++++|. -|+|+-.|-.|.+-....+|= +.
T Consensus 55 ~p~l~eeF~~~ae~hR~l~k~G~~----ll~ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~ 130 (215)
T cd07659 55 QPAASEAFTKFGEAHRSIEKFGIE----LLKTLKPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEY 130 (215)
T ss_pred ChhHHHHHHHhHHHHHHHHHhHHH----HHHHhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456667777777776655544333 33444443333321 12445544 478889999888876444554 33
Q ss_pred ccCCCCCcc------------hhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhh
Q 008054 87 SKSGKGESV------------SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE 153 (579)
Q Consensus 87 sk~~K~e~~------------i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE 153 (579)
+-.+-+|.+ |.. .-|++++-|++-|.=..-.|+=|.+++..++-.|+.++|-|=..+|.++.+.++
T Consensus 131 ~~~~~~e~l~rvetgnyeyrl~lR-crq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 131 SYAALDEPLYRVETGNYEYRLILR-CRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred ccccccCcHHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 433344443 222 337899999999977777888999999999999999999999999998777665
No 63
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.56 E-value=18 Score=35.13 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV 95 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~ 95 (579)
+++.+|-.+|.+=-.....++.+..++...+.-|+-.++.=...++.+-+--+.|...||... ..+
T Consensus 60 ~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~-~~L------------- 125 (187)
T cd07629 60 ELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTK-DSL------------- 125 (187)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------------
Confidence 567777777766666666677777777777777777777766666666666677888888765 444
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHhhhhcccc---chhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 96 SLQQQLQAANDEYEEEA-RLCVFRLKSLKQGQ---YRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa-~lc~frLKsLKqgq---~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
.+ ++.+++.+|++-+ +.+.--|---+..+ .+++|...|+ .|-.++.++|+.-+.+.
T Consensus 126 -~e-~~~~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~---~~~~~a~~~~~~W~~~~ 185 (187)
T cd07629 126 -LE-SALVAASDDLVISSTIKQKDLPRFQREREADLREILKNYSK---YHKDWAKQNLEAWKEAK 185 (187)
T ss_pred -HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 33 5556777777765 44443333333333 4444554444 46678888887776654
No 64
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=85.50 E-value=16 Score=38.71 Aligned_cols=137 Identities=15% Similarity=0.261 Sum_probs=88.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc------cC
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKS------KS 89 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrs------k~ 89 (579)
-|.+|++.|..++-|-.--..+...-.-..-.|+-..|. |.|++..=.|-..-||-|.++-- ...-|-|. ++
T Consensus 111 YG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcK-sRLKKAKaae~q~~rN 189 (375)
T KOG3725|consen 111 YGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACK-SRLKKAKAAELQTVRN 189 (375)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHH-HHHHHhhhhhhhcccc
Confidence 488999998888877665555554444444568888888 89998866777778888777654 33333322 33
Q ss_pred CCCCcc----hhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 90 GKGESV----SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 90 ~K~e~~----i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
.|.-+- ..+|+|.-++.||++-+.+--.+|.-|-.-- ..-|.-+-.+-.|||.||-++....=.|
T Consensus 190 ~~~s~~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH-~nhLrCL~dFVeaQmtyYAQcyq~MlDL 258 (375)
T KOG3725|consen 190 SKTSGGFTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTH-NNHLRCLRDFVEAQMTYYAQCYQLMLDL 258 (375)
T ss_pred ccccCcchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321 2344888899999998877766666443222 2223445556678999998876544333
No 65
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.49 E-value=12 Score=37.44 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=85.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHH
Q 008054 23 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLN--ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQ 100 (579)
Q Consensus 23 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk--eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~q 100 (579)
.|-++-.++..++..--.++.+.+..|+..+.. +++.++++||+||+-=++|=.-+..+.-.+.++. +.|+ -
T Consensus 59 yf~~~~~~~~~~~~~~~~~lq~~~iep~~~~y~~~dik~~~~kkK~FEeeSKdYYs~l~kYLsn~~~~k-~~DS-----K 132 (192)
T cd07608 59 YFDPFLLNLAFFLRDVCQDLQLKKIEPLLKIYSINDIKELSDKKKDFEEESKDYYSWLSKYLSNESDKK-RPDS-----K 132 (192)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhhhHHHHhHHHHHHHHHHhccccccc-Ccch-----H
Confidence 345566677777777777888888888888765 9999999999999988888888788876554111 2222 2
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 101 LQAANDEYEEEA-RLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 101 l~~a~eE~eeEa-~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
++.=+-.||==| -.+.|.-.--.-.+...||..+-++...|-..|.--++-++++-|+
T Consensus 133 ~l~KRk~FEL~RFDY~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~~~~~~i~~~~p~ 191 (192)
T cd07608 133 LLAKRKTFELSRFDYLNYLQDLHGGRKEQELLSILTKFINQQYDSIALTSNKIDALRPS 191 (192)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHhHhhhHHhhccC
Confidence 333333443333 2333333333333456888888888888888777666667776654
No 66
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=84.71 E-value=4.2 Score=41.54 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=38.6
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHH-HHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKR 65 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~ve-emKk 65 (579)
--.|+|.||+..+.++++++.-+..-..-.-+-|..|+|-=++ |.+.+. ..|+
T Consensus 62 ~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kk 116 (226)
T cd07645 62 VSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKR 116 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999985554444444555558888777 887777 4444
No 67
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.33 E-value=15 Score=37.28 Aligned_cols=139 Identities=11% Similarity=0.087 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH------HHHhhcccc
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA------QQREKGKSK 88 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a------~~~EKgrsk 88 (579)
+-.|.+|-.||++.-.+..|...=..+.+.|+.-|++-.+.+...|||. |...-..|..... .+.+...+=
T Consensus 72 ~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKea---ltnR~~~~re~~qAq~~~~~K~~~~~rl 148 (230)
T cd07625 72 HGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEA---LTNRHLLMRELIQAQQNTKSKQEAARRL 148 (230)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888999999999999888888743 2322222222221 222222221
Q ss_pred CCCCCcchhHHHHHHHHHHHH------HHH--------HHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhh
Q 008054 89 SGKGESVSLQQQLQAANDEYE------EEA--------RLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEA 154 (579)
Q Consensus 89 ~~K~e~~i~~~ql~~a~eE~e------eEa--------~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~ 154 (579)
.++ +-|+..-+.+|..+++ ++. +....-++........+|-.-+..|=..|..+=|+-|+.+|.
T Consensus 149 k~s--~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~ 226 (230)
T cd07625 149 KAK--RDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLER 226 (230)
T ss_pred hcC--CCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 2222212333333332 222 111112223334455566666666666788888899999999
Q ss_pred hhHH
Q 008054 155 VDTH 158 (579)
Q Consensus 155 leph 158 (579)
|.++
T Consensus 227 ~r~d 230 (230)
T cd07625 227 IRLD 230 (230)
T ss_pred ccCC
Confidence 8763
No 68
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=83.43 E-value=13 Score=37.67 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=81.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
++..++++|-.||.++.-|..+...--.+-+.+...|++--+.-++-|+..=.+=-+.|..|...- .-++|.|.+.+|-
T Consensus 74 ~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~-~~L~kkr~~~~Kl 152 (234)
T cd07664 74 DHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQ-VTLQKKREAEAKL 152 (234)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 556799999999999999999999999999999988888888888887754333334444444431 2233333332222
Q ss_pred CcchhHHHHHHHHH----------HHHHHHHHHHHHhh----hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 93 ESVSLQQQLQAAND----------EYEEEARLCVFRLK----SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 93 e~~i~~~ql~~a~e----------E~eeEa~lc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
.+..+++-++++.+ +.+++-.-+.=++| .....+-.++-..+..|-..|..+=.+.++.-|.+-|
T Consensus 153 ~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p 231 (234)
T cd07664 153 QYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 231 (234)
T ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11111112222222 23333333333333 3334455555555555555565544444444444444
No 69
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=83.13 E-value=26 Score=34.54 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHhHHHHHHHH-------HHHHHHhhhhhccCCcHHH---HHH-hhhHHHHHHHH---HHHHHHHHHHHH
Q 008054 14 DEESRKVLLMLGEVQFELQKL-------VDNYRSNIFLTITNPSESL---LNE-LRTVEDMKRQC---DEKRNVCEYVMA 79 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL-------~d~yr~nI~~tIt~PsESL---Lke-Lk~veemKkqc---Dekr~~YE~m~a 79 (579)
=.|.|.+|-.||.+-.+|..- +|.|-.-+-++..- .+.+ |+| ++...-||.-| |-+.-+||...
T Consensus 51 ~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~- 128 (201)
T cd07622 51 HANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAE- 128 (201)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356677777777666666666 66665444443222 1212 222 22222333333 22333555543
Q ss_pred HHHhhccccCCCCCcchhHHHHHHHHHHHHH---HHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 80 QQREKGKSKSGKGESVSLQQQLQAANDEYEE---EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 80 ~~~EKgrsk~~K~e~~i~~~ql~~a~eE~ee---Ea~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
.++.|-+.. ... +++++.++|+. +.--=.-|.+..|+.=.++.|...|. .|-.||++|+..-|.++
T Consensus 129 ~~L~~k~~~-------l~~-~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~---~qi~~~~~~~~~W~~~~ 197 (201)
T cd07622 129 DALANKKQQ-------GEE-AVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAK---LQIKLAKKGLQTWTNIK 197 (201)
T ss_pred HHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444444322 334 77766666655 33222345567776666666666554 57789999999988876
Q ss_pred HH
Q 008054 157 TH 158 (579)
Q Consensus 157 ph 158 (579)
.+
T Consensus 198 ~~ 199 (201)
T cd07622 198 EC 199 (201)
T ss_pred hc
Confidence 54
No 70
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=82.93 E-value=23 Score=35.99 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=92.8
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
++...+++|..||.+..=+.++...-..+-..+...++.--+..+.-+++|=-+==.+|..||+-- .-.+|-|-++.+-
T Consensus 74 e~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~-~~L~KaR~k~kev 152 (218)
T cd07663 74 EPTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSN-KALDKARLKSKDV 152 (218)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhH
Confidence 444689999999999888888888777778888777777777788888888777778899999863 6677777442221
Q ss_pred CcchhHHHHHHHHHHHHHHH-----HHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 93 ESVSLQQQLQAANDEYEEEA-----RLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa-----~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
. ...+ ..+++.++||+=. .|-.|... .+|. -...++.-.++|-..|..+++..+..|
T Consensus 153 ~-~aE~-~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~-~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 153 K-QAEA-HQQECCQKFEKLSESAKQELISFKRRRVAAFRK-NLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred H-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1122 4456666666544 23333322 3322 245667777889999999999876543
No 71
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=81.72 E-value=62 Score=32.68 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccC---CCCCc---chhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 008054 63 MKRQCDEKRNVCEYVMAQQREKGKSKS---GKGES---VSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAAR 136 (579)
Q Consensus 63 mKkqcDekr~~YE~m~a~~~EKgrsk~---~K~e~---~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaR 136 (579)
.=++|+..|-.|..-+.--+|=-.... .++-. .+-. +++++++-|++-+.=+.--|+=|.+++-..|-.|++.
T Consensus 103 TI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~-~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~ 181 (203)
T cd00011 103 TVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQA-TFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLL 181 (203)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 447889999999887743333322221 12111 1224 7779999999999777778888999999999999999
Q ss_pred HHHHHHhhHHHhhhhhhhh
Q 008054 137 HHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 137 hhaAQl~fFrkGLKsLE~l 155 (579)
+|.|=+.||.+.-+.||.+
T Consensus 182 ~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 182 FHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 9999999999988888765
No 72
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=80.16 E-value=31 Score=35.18 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=84.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
+...+.++|..|+.+..-++++.-.-..+=..++..=+.--+..+.-++||=-+==++|..||+-- .-.+|-|-++ |
T Consensus 74 e~t~L~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~-k~L~KaR~~~-k- 150 (218)
T cd07662 74 DSTDICKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENAN-KALDKARAKN-K- 150 (218)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcC-C-
Confidence 456778888888888776666666655555555544444555567777877777677888999863 6677777664 2
Q ss_pred CcchhHHHHHHHHHHHHHHH-----HHHHHHhh---hhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 93 ESVSLQQQLQAANDEYEEEA-----RLCVFRLK---SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa-----~lc~frLK---sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
+-.-.++-++++.++||+=. .|-.|..+ .+|. --..++.-.++|-.+|..|++..|..|
T Consensus 151 ev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk-~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 151 DVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRK-NLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22212224456666776544 33333322 3322 134455566778888999999877543
No 73
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.04 E-value=34 Score=35.19 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=68.8
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcc-------CCcHHHHHHhhh----HHHHHHHH---HHHHHHHHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTIT-------NPSESLLNELRT----VEDMKRQC---DEKRNVCEYVM 78 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt-------~PsESLLkeLk~----veemKkqc---Dekr~~YE~m~ 78 (579)
|=.|.|.+|..++..+.||..-++..-..|-++.+ .=.+-+|-.|+. .+-||.-| |.|--+||.+.
T Consensus 87 d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~ 166 (240)
T cd07667 87 ELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKL 166 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33578888888888888877665555444333311 011112222222 22334333 44445888765
Q ss_pred HHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 79 AQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 79 a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
. +.--.|-+..|-++-|. +++...|-|++|--==.=|...+|+.-+++.|..+|..| -.||++.+..-|.+
T Consensus 167 E-~l~~rre~~~kLe~~ie--~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~---i~fy~~~~~~We~~ 237 (240)
T cd07667 167 E-AVALRKEERPKVPTDVE--KCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKN---IQYYEKCLTAWESI 237 (240)
T ss_pred H-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 2 21100111111122121 233222222222211122345788888899999988876 57999988777655
No 74
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.61 E-value=82 Score=32.44 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=53.8
Q ss_pred CcHHHHHH-hhhHHHHHHHH---HHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh----
Q 008054 49 PSESLLNE-LRTVEDMKRQC---DEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLK---- 120 (579)
Q Consensus 49 PsESLLke-Lk~veemKkqc---Dekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLK---- 120 (579)
.....|+| +..++-||--| |.+--+||.+. .++.|+|.. | + .+.+ ++.+..+.+|+ |.=.||
T Consensus 136 ~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~-e~l~k~~~d--r-~-~~~~-ev~~~e~kve~----a~~~~k~e~~ 205 (243)
T cd07666 136 QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKV-EALANKKAD--R-D-LLKE-EIEKLEDKVEC----ANNALKADWE 205 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhh--H-H-HHHH-HHHHHHHHHHH----HHHHHHHHHH
Confidence 44455554 33333333222 35556888887 777775432 2 1 2333 44433222222 122233
Q ss_pred hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 121 SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 121 sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
--++-+-+||=.-++.|=--|+.+++++|++-|.+
T Consensus 206 Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 206 RWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777777777778999999999988875
No 75
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=74.13 E-value=52 Score=32.79 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---ccccchhHHHHHHHHHHHHHh----hHHHhhhhhhhhhH
Q 008054 100 QLQAANDEYEEEARLCVFRLKSL---KQGQYRSLLTQAARHHAAQLN----FFRKGFKSLEAVDT 157 (579)
Q Consensus 100 ql~~a~eE~eeEa~lc~frLKsL---Kqgq~rsLLtqaaRhhaAQl~----fFrkGLKsLE~lep 157 (579)
.|.++..++|.++-+|-=.+-.| +-.--++.|++.+-|..-||- ...+.+.+||.+++
T Consensus 147 ~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~~~ 211 (228)
T cd07650 147 DLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEFDT 211 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCCCh
Confidence 56688888888884332222222 112235889999999988885 44455666666554
No 76
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=73.17 E-value=12 Score=35.92 Aligned_cols=59 Identities=36% Similarity=0.399 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhhc----cCCcH----------------HHHHHhhhHH-------HHHHHHHHHHHHHHHH
Q 008054 25 GEVQFELQKLVDNYRSNIFLTI----TNPSE----------------SLLNELRTVE-------DMKRQCDEKRNVCEYV 77 (579)
Q Consensus 25 gk~q~EL~kL~d~yr~nI~~tI----t~PsE----------------SLLkeLk~ve-------emKkqcDekr~~YE~m 77 (579)
....+||.||.+++..|.++-+ ..|.. -||||+|-.. -|++|.++||+..+.+
T Consensus 71 ~d~~~eLkkL~~sll~nfleLl~~l~~~P~~~~~ki~~i~~L~~NmhhllNeyRPhQARetLi~~me~Ql~~kr~~i~~i 150 (162)
T PF05983_consen 71 VDRKKELKKLNKSLLLNFLELLDILSKNPSQYERKIEDIRLLFINMHHLLNEYRPHQARETLIMMMEEQLEEKREEIEEI 150 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS---CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999998887776543 34542 3455555332 3666666666666665
Q ss_pred HHHHHhh
Q 008054 78 MAQQREK 84 (579)
Q Consensus 78 ~a~~~EK 84 (579)
. +..++
T Consensus 151 ~-~~~~~ 156 (162)
T PF05983_consen 151 R-KVCEK 156 (162)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 4 44443
No 77
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=72.95 E-value=62 Score=27.97 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhhhhccCCcHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHH
Q 008054 30 ELQKLVDNYRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEY 108 (579)
Q Consensus 30 EL~kL~d~yr~nI~~tIt~PsESLLke-Lk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~ 108 (579)
++..-+..++.++.+.|..+-+.-.++ .+.+++..+.+++.++.|+.......| .-.-+ ++.+..++|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~y 121 (181)
T PF12729_consen 53 DIRSNLQRIRRALRRYLLATDPEERQEIEKEIDEARAEIDEALEEYEKLILSPEE----------KQLLE-EFKEAWKAY 121 (181)
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH----------HHHHH-HHHHHHHHH
Confidence 344445555667777777777666664 345677777778877777765411111 11234 677777777
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH-hhHHHhhhhhhhhhHHHHHHhhhh
Q 008054 109 EEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL-NFFRKGFKSLEAVDTHVRLVAERQ 166 (579)
Q Consensus 109 eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl-~fFrkGLKsLE~lephVk~~ae~~ 166 (579)
.+...=. +.-.+.|... .|...+..++ ..|.+-.+.+..+--+....|++.
T Consensus 122 ~~~~~~~---~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~~~ 173 (181)
T PF12729_consen 122 RKLRDQV---IELAKSGDND----EARAILNGEARPAFDELRDALDELIEYNNQQAEQA 173 (181)
T ss_pred HHHHHHH---HHHHHCCCHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665222 2233444433 2223333333 556666666666666666666543
No 78
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=72.68 E-value=70 Score=33.14 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQC 67 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqc 67 (579)
.-.|+|.||+.++.+.++++.-+.....-..+-|..|+|-=++ |.+.+...-|.|
T Consensus 64 gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky 119 (232)
T cd07646 64 GSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKY 119 (232)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999888766666655555666669998777 777777433333
No 79
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.27 E-value=43 Score=36.50 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=30.7
Q ss_pred hhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 119 LKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 119 LKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
++..++-+-.++..-+..+.-.+..++.+.|+.-|++.+-
T Consensus 458 ~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~ 497 (503)
T KOG2273|consen 458 LERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPS 497 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4466666677777777777778889999998888888773
No 80
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=67.05 E-value=29 Score=33.13 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=52.8
Q ss_pred cccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccC-----CcHHHHHHhhhHH---HHHHHHHHH-HHHH
Q 008054 4 CLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITN-----PSESLLNELRTVE---DMKRQCDEK-RNVC 74 (579)
Q Consensus 4 CLlEk~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~-----PsESLLkeLk~ve---emKkqcDek-r~~Y 74 (579)
-|+++++-+++++.+.+++.+... .+|+-...-....... .+..|.+.+..+. -.++.++.+ |+.+
T Consensus 75 al~~~~~~~~~~~~~~al~~~~~~-----~~f~~l~~~~~~~~~~~~~~k~l~~la~~~~~l~~A~~~~~k~~~~ir~~~ 149 (180)
T PF11985_consen 75 ALAEELGDEPEDDVTEALIEMLQT-----LLFEALMSAQEEDEEDDDPPKDLMKLAKALARLSRASVYSKKRRAEIRKKA 149 (180)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHH-----HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888988999999999887654 2233333322222222 4556666666655 233333332 2345
Q ss_pred HHHHHHHHhhccccCCCCCcchhHHHHHHHHHHH
Q 008054 75 EYVMAQQREKGKSKSGKGESVSLQQQLQAANDEY 108 (579)
Q Consensus 75 E~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~ 108 (579)
+.......|+ .+|..|+..+ .+..+++++
T Consensus 150 ~~~~~~~~e~----~~~~~Gls~e-~~~~ir~~i 178 (180)
T PF11985_consen 150 AAEAAAAAEE----AAKEGGLSAE-TVERIRREI 178 (180)
T ss_pred HHHHHHHHHH----HHhhcCCCHH-HHHHHHHHh
Confidence 5444333333 3555666666 777777653
No 81
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=66.68 E-value=1.2e+02 Score=35.76 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=92.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV 95 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~ 95 (579)
+.+.|..||.+-.++..=--.+.-|-...+..|+|..-| .+.+.||-|+.||+--+-|-.. +||-=-=..|.|+
T Consensus 83 ia~slkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~----LekHLhLSskkes- 157 (812)
T KOG1451|consen 83 IATSLKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQT----LEKHLHLSSKKES- 157 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHH----HHHHhccccchhh-
Confidence 455566665543333222222233344445556666666 5667789999999877765444 4665555555543
Q ss_pred hhHHHHHHHHHHHHHHHH-HH------HHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhh-hhc
Q 008054 96 SLQQQLQAANDEYEEEAR-LC------VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE-RQH 167 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa~-lc------~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae-~~h 167 (579)
|||||-.+.+.+|+ +| +|.+.|....+--.++.-+.-+-+.=..||.-|.--.-.+.|+-..|.- -|+
T Consensus 158 ----qlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~s~Qn 233 (812)
T KOG1451|consen 158 ----QLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQN 233 (812)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHH
Confidence 88888888888883 33 3444477666666777777777778888888888777777777655532 234
Q ss_pred ccccccC
Q 008054 168 IDYQFSG 174 (579)
Q Consensus 168 IDy~fSg 174 (579)
---+|+|
T Consensus 234 Trn~f~~ 240 (812)
T KOG1451|consen 234 TRNNFNA 240 (812)
T ss_pred hhhcccc
Confidence 4445554
No 82
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=63.06 E-value=95 Score=31.02 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=15.0
Q ss_pred cccchhHHHHHHHHHHHHHhhHHH
Q 008054 124 QGQYRSLLTQAARHHAAQLNFFRK 147 (579)
Q Consensus 124 qgq~rsLLtqaaRhhaAQl~fFrk 147 (579)
....+++|.+.+.|..-+|.-+.+
T Consensus 199 i~~~k~~l~~y~~~~~~~~~~~~~ 222 (261)
T cd07648 199 LRQMKEFLASYAEVLSENHSAVGQ 222 (261)
T ss_pred HHHHHHHHHHHHHHHHhccchHHH
Confidence 334556777777777776664444
No 83
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=59.73 E-value=1.6e+02 Score=30.22 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m 77 (579)
++.-.+++|-.||.++.-|..+.+.--.+.+.|...|++.-+.=++-|+ --|+..-+.|.+.
T Consensus 74 ~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK---~~f~~R~k~~~~~ 135 (234)
T cd07665 74 DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVR---GAFDQRMKTWQRW 135 (234)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5567899999999999999999999999999998888887765555554 4455544444433
No 84
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=59.10 E-value=91 Score=28.37 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHhhhhccccccc
Q 008054 152 LEAVDTHVRLVAERQHIDYQFS 173 (579)
Q Consensus 152 LE~lephVk~~ae~~hIDy~fS 173 (579)
.+.|...|+.+|++..+|+-|.
T Consensus 115 ~~~i~~~v~~~a~~~g~~~Vl~ 136 (158)
T PF03938_consen 115 QKKINKAVEEYAKENGYDLVLD 136 (158)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEe
Confidence 4568899999999999999987
No 85
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=58.80 E-value=17 Score=32.33 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=39.7
Q ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhH
Q 008054 49 PSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQ 98 (579)
Q Consensus 49 PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~ 98 (579)
--|.||||+..|=.=++-|||-+++|-..+ ..-+|+--+.-+.-+.+.+
T Consensus 21 dte~llkEiedVYKKAqaFDeI~e~~~~~~-~~~~~~~~~ldea~~im~~ 69 (82)
T PF06260_consen 21 DTEGLLKEIEDVYKKAQAFDEILEDINNQI-QEYRKEDIELDEAVGIMVE 69 (82)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccchHHHHHHHHH
Confidence 348999999999888999999999998887 6677776666666676666
No 86
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=58.55 E-value=67 Score=32.61 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=61.7
Q ss_pred HhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHH
Q 008054 25 GEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 103 (579)
Q Consensus 25 gk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~ 103 (579)
+++|.+.. -+.|..+..++-+..-.+-..+||..-+ .+++|++++.+.+...- ..++.|.|+ + .. ||+.
T Consensus 105 ~v~~~~~~-~~~ns~~~k~~~~g~~~~~~~~el~~ek~kL~~q~~e~~e~lr~L~--~~k~~r~Kn---~---~~-~Lq~ 174 (221)
T PF10376_consen 105 SVCQAASS-YLLNSSSPKIQKMGGYEELKQQELEEEKRKLEKQVDEKEEELRRLK--LVKQYRSKN---D---LE-QLQS 174 (221)
T ss_pred ccchhhch-hhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhhc---c---HH-HHHH
Confidence 44444433 2333333344433333444455776655 77888888888777653 222233222 1 22 5555
Q ss_pred HHHHHHHHHHHHHHHhh-hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhhcccccccCC
Q 008054 104 ANDEYEEEARLCVFRLK-SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL 175 (579)
Q Consensus 104 a~eE~eeEa~lc~frLK-sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~hIDy~fSgL 175 (579)
.-++++.-+|--.+.|- .+.+ -|.=++-+..|...+.|||.+-+-
T Consensus 175 lI~Kwr~~~q~~l~eL~~~~~~---------------------------~e~~~~TM~eL~~~l~ID~~LI~~ 220 (221)
T PF10376_consen 175 LIKKWRSASQEALYELQSEMSE---------------------------EEGEKFTMGELIKRLGIDYDLIHY 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---------------------------ccccCccHHHHHHHhCCCccccCC
Confidence 55555555544444333 2222 233377788999999999988654
No 87
>smart00721 BAR BAR domain.
Probab=57.83 E-value=1.7e+02 Score=27.72 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~ 78 (579)
...|.++..++.+..|+.....++...+.+.+..-...+-+..+..+...-.||..|.-++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~ 161 (239)
T smart00721 98 DKLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAK 161 (239)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4578888888888888755555556666666555555566667777788888999998888763
No 88
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=57.17 E-value=1.4e+02 Score=26.34 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=34.2
Q ss_pred HHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc--chhHHHHHHHHHHHHHHHH
Q 008054 36 DNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES--VSLQQQLQAANDEYEEEAR 113 (579)
Q Consensus 36 d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~--~i~~~ql~~a~eE~eeEa~ 113 (579)
..++....+.|....-.-|+++.. ..-+...+.++.|+.++ ...|+-+.|..+... --.. .+.++.++|++-+.
T Consensus 67 ~~~~~~~~~~~~~~v~~pL~~~~~--~~~~~~~~~~k~~~~~~-~~yd~~~~k~~~~~~~~~~~~-~l~~~~~~~~~ar~ 142 (194)
T cd07307 67 EEFRDQLEQKLENKVIEPLKEYLK--KDLKEIKKRRKKLDKAR-LDYDAAREKLKKLRKKKKDSS-KLAEAEEELQEAKE 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Confidence 334444444444444444433321 22234556666666655 333333333222111 0222 55666666666554
Q ss_pred HHH
Q 008054 114 LCV 116 (579)
Q Consensus 114 lc~ 116 (579)
-++
T Consensus 143 ~y~ 145 (194)
T cd07307 143 KYE 145 (194)
T ss_pred HHH
Confidence 443
No 89
>PRK10780 periplasmic chaperone; Provisional
Probab=57.11 E-value=1e+02 Score=29.16 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHhhhhccccccc
Q 008054 150 KSLEAVDTHVRLVAERQHIDYQFS 173 (579)
Q Consensus 150 KsLE~lephVk~~ae~~hIDy~fS 173 (579)
+-++.|.--|+.+|++..+||-|.
T Consensus 120 ~i~~ki~~ai~~vak~~gy~~Vld 143 (165)
T PRK10780 120 KILTRIQTAVKSVANKQGYDLVVD 143 (165)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEe
Confidence 356777888999999999999995
No 90
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.57 E-value=2.3e+02 Score=33.47 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNI 42 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI 42 (579)
+.+.+.+|--.++.-..++.+|+..+-...
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~ 529 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELE 529 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 457888888888888888888888775543
No 91
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=53.38 E-value=1.5e+02 Score=25.61 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=19.0
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNI 42 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI 42 (579)
|.++.....-.+.....++.+.++.|...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (181)
T PF12729_consen 73 DPEERQEIEKEIDEARAEIDEALEEYEKLI 102 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555566667777777777776643
No 92
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=52.50 E-value=1.9e+02 Score=29.54 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-HHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008054 15 EESRKVLLMLGEVQFELQKLV-DNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE 93 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~-d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e 93 (579)
...|.+...+|.++.++-..+ .+|...|.+++..-.-...++.|.+|...=.||-+|.-+.. ++.+.. ..+.+
T Consensus 96 ~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~k---Ak~~~~---~~~~e 169 (229)
T cd07594 96 IKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKK---AKSAEA---IEQAE 169 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCccc---hhhhH
Confidence 578999999999999987654 56777777776666667777889999888889988886642 222221 12333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhH--HHHHHHHHHHHHh
Q 008054 94 SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSL--LTQAARHHAAQLN 143 (579)
Q Consensus 94 ~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsL--LtqaaRhhaAQl~ 143 (579)
--+++ -++-+++=-|++..+-+-+++-...+-+.| |-.|---||.||.
T Consensus 170 ~elr~--Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~ 219 (229)
T cd07594 170 QDLRV--AQSEFDRQAEITKLLLEGISSTHANHLRCLRDFVEAQMTYYAQCY 219 (229)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 33443 455566666788777888886555554444 4455566777774
No 93
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.50 E-value=44 Score=32.17 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=34.0
Q ss_pred HHHHHHHHHH--------hHHHHHHHH---HHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008054 16 ESRKVLLMLG--------EVQFELQKL---VDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 16 e~g~vll~lg--------k~q~EL~kL---~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~ 78 (579)
.+|-+++.|+ ++|.||.++ +|+|++.+..-... +-|=+|.--.--+++|+||-
T Consensus 20 ~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~----------sAeLlktl~~dYqklyqHmA 83 (138)
T COG3105 20 IIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFAR----------SAELLKTLAQDYQKLYQHMA 83 (138)
T ss_pred HHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 4566666665 788999876 78888877544221 23333444455678999984
No 94
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=52.35 E-value=1.3e+02 Score=29.65 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh---------------HHHHHHHHHHHHHHHHHHH
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRT---------------VEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~---------------veemKkqcDekr~~YE~m~ 78 (579)
+-...+|..|-.....+......+..+|.+-|.-|+..+.++++. ..++.+.+++.++.|+..-
T Consensus 56 gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 134 (236)
T cd07651 56 GGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADC 134 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666677777777777776676666553321 1244556778888887664
No 95
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.56 E-value=69 Score=29.91 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 39 RSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 39 r~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
+.-|.+.|--=-+.+-++|...++.+++-++....||..++
T Consensus 30 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~ 70 (164)
T PRK14471 30 WKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLK 70 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555566899999999999999999999885
No 96
>PF15294 Leu_zip: Leucine zipper
Probab=51.34 E-value=1.9e+02 Score=30.80 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=76.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 18 RKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRT-----VEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 18 g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~-----veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
..-|...-..+.|+..+||.+..+|-..+ |+ ||+. |-.|++-|..+.+-| -+...+
T Consensus 22 ~srL~e~t~T~~EV~~~ldgL~~~v~~~v----es---EL~N~~htn~lllrql~~qAek~~------------lkl~~d 82 (278)
T PF15294_consen 22 SSRLREDTYTSDEVTEMLDGLQVVVKSEV----ES---ELINTSHTNVLLLRQLFSQAEKWY------------LKLQTD 82 (278)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HH---HHHhHHHhHHHHHHHHHHHHHHHH------------HHhccc
Confidence 34455667778888888888887765431 11 2222 224455455444444 222334
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH---------HhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 93 ESVSLQQQLQAANDEYEEEARLCVF---------RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa~lc~f---------rLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
-+-+.+.+|-+..++||+-.---.+ +|..|+.+-+.-||+--|+--.+.+.=-+.-|+++|..--
T Consensus 83 iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at 156 (278)
T PF15294_consen 83 ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQAT 156 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454555666667654422222 4778988888899999999999999999999999986543
No 97
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=51.05 E-value=1.4e+02 Score=30.85 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDM 63 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veem 63 (579)
--.++|.||+..+.++++++.=+..-.+-.-+-|-.|+|-=++ |.+.+.+-
T Consensus 62 ~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEkk~elD~kyi~~s 113 (215)
T cd07644 62 TSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKLDMQFIEDS 113 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3468999999999999999887776666666667777887777 77777733
No 98
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=50.50 E-value=91 Score=29.56 Aligned_cols=39 Identities=8% Similarity=0.156 Sum_probs=29.3
Q ss_pred hhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 41 NIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 41 nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
-|.+.|-.=-+.+.++|...++++++-++....|+..+.
T Consensus 42 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~ 80 (175)
T PRK14472 42 PILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLA 80 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555666899999999999999999999883
No 99
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=49.48 E-value=1.6e+02 Score=27.90 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.7
Q ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 49 PSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 49 PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
=-+.+.++|...++.+++-++....|+.+++
T Consensus 51 R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~ 81 (174)
T PRK07352 51 RREAILQALKEAEERLRQAAQALAEAQQKLA 81 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566799999999999999999999984
No 100
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=48.94 E-value=42 Score=31.14 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=43.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHH
Q 008054 25 GEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCE 75 (579)
Q Consensus 25 gk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE 75 (579)
-.||.||+++++.|.+=+-.+-.+|--++-.-+..+++|+.-.|+-|.-|-
T Consensus 8 eiVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~ 58 (108)
T PF08855_consen 8 EIVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYK 58 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888887877788899999998887666553
No 101
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=48.54 E-value=1.7e+02 Score=31.45 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=63.4
Q ss_pred hhHHH---HHHHHHHHHHHHHHHHHHHHhhc----cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Q 008054 58 RTVED---MKRQCDEKRNVCEYVMAQQREKG----KSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSL 130 (579)
Q Consensus 58 k~vee---mKkqcDekr~~YE~m~a~~~EKg----rsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsL 130 (579)
|+++| .-+||+-+|..|++-+ .-+|-- |-...|.----.|.-+++-.|.||+-|-=..-.+|=|...+-.=+
T Consensus 217 kTi~DTL~Ti~qyEsARiEyDayR-~Dle~~~l~P~~~~t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVm 295 (341)
T KOG3876|consen 217 KTIEDTLMTIKQYESARIEYDAYR-TDLEELTLGPRDALTKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVM 295 (341)
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhh-hhHHHhcCCccccccccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Confidence 46664 3589999999999988 444432 223333332223334557788999998666666666666666666
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhhh
Q 008054 131 LTQAARHHAAQLNFFRKGFKSLEA 154 (579)
Q Consensus 131 LtqaaRhhaAQl~fFrkGLKsLE~ 154 (579)
-.|+...|.|=--||.---|.||.
T Consensus 296 h~QL~llhnAiaAYfsGNak~LE~ 319 (341)
T KOG3876|consen 296 HKQLELLHNAIAAYFSGNAKQLEQ 319 (341)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHH
Confidence 677777777777777766676664
No 102
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=47.94 E-value=1.6e+02 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 008054 103 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA 140 (579)
Q Consensus 103 ~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaA 140 (579)
..+||-++++.||-|.- ..+.|+.+.++|+.
T Consensus 272 ~~~e~a~~~~~~c~~~~-------~~~~l~~~l~~~~~ 302 (350)
T cd09244 272 LLHEEALRLHRMCRFLR-------NVDSLQEVLKEAHD 302 (350)
T ss_pred HHHHHHHHHHHHHhhhc-------chHHHHHHHHHHHH
Confidence 45677777778887654 45667777776654
No 103
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=47.21 E-value=1.2e+02 Score=31.08 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=87.6
Q ss_pred CchHHHHHHHHHHhHHHHHH-HHHH------HHHHhhhhhccCCcHHHHHHhhhHH--------HHHHHHHHHHHHHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQ-KLVD------NYRSNIFLTITNPSESLLNELRTVE--------DMKRQCDEKRNVCEYV 77 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~-kL~d------~yr~nI~~tIt~PsESLLkeLk~ve--------emKkqcDekr~~YE~m 77 (579)
.+.+.|+.|-.+|.-..++. +... .+-.+-...+-+|+--+..|+.+.- ..=++++..|-.|.+-
T Consensus 38 ~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~qrl~~r~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~ 117 (204)
T cd07661 38 EENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQRLALRVPLLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAA 117 (204)
T ss_pred HHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 45666777766666655554 1111 1112223345556666666665543 3568999999999998
Q ss_pred HHHHHhhcc----ccCCCCCcchh--HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhh
Q 008054 78 MAQQREKGK----SKSGKGESVSL--QQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKS 151 (579)
Q Consensus 78 ~a~~~EKgr----sk~~K~e~~i~--~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKs 151 (579)
+ .-.+..- .+-+|+-.-++ |.|++...+-||+-+.=+.=.++=|...+--=|=.|++=||.|=++||.|--.+
T Consensus 118 ~-~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~ 196 (204)
T cd07661 118 L-LWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRT 196 (204)
T ss_pred H-HHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 3333322 23333333233 237778899999888544445566666666666678889999999999887666
Q ss_pred hhhh
Q 008054 152 LEAV 155 (579)
Q Consensus 152 LE~l 155 (579)
.++|
T Consensus 197 ~~~i 200 (204)
T cd07661 197 MATI 200 (204)
T ss_pred HHHH
Confidence 6554
No 104
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.15 E-value=2.3e+02 Score=27.63 Aligned_cols=67 Identities=7% Similarity=0.137 Sum_probs=45.9
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHH-HHHHHHHHHHHHHHHHHHhh-hhccc
Q 008054 50 SESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQ-LQAANDEYEEEARLCVFRLK-SLKQG 125 (579)
Q Consensus 50 sESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~q-l~~a~eE~eeEa~lc~frLK-sLKqg 125 (579)
-+-+-.+|...+++|.+-++.+..||..++..+++.+ -|++ + -..+..|.+.++.=.+=+|| .|+|+
T Consensus 43 ~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~--------~I~~-e~~~~~~a~~~~~~~~~ea~L~~~~~~~ 111 (155)
T PRK06569 43 QTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEID--------RLKK-EKIDSLESEFLIKKKNLEQDLKNSINQN 111 (155)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444457889999999999999999999854444332 1344 3 44666677777766666776 55554
No 105
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.09 E-value=1.7e+02 Score=29.64 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=10.7
Q ss_pred cchhHHHHHHHHHHHHHh
Q 008054 126 QYRSLLTQAARHHAAQLN 143 (579)
Q Consensus 126 q~rsLLtqaaRhhaAQl~ 143 (579)
..+++|.+.+.|+..+|-
T Consensus 201 ~lk~~L~~~~~~~~~~~~ 218 (261)
T cd07674 201 HMKLLIKGYSHSVEDTHV 218 (261)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 445677777766555543
No 106
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.31 E-value=1.6e+02 Score=29.96 Aligned_cols=115 Identities=17% Similarity=0.069 Sum_probs=66.6
Q ss_pred HHHHHHHHHH------HhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHH
Q 008054 30 ELQKLVDNYR------SNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 102 (579)
Q Consensus 30 EL~kL~d~yr------~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~ 102 (579)
=||.|||.=. .-.+.--+||||.+-+ ++.|. +|..||+.-++.--+.. .++|+.|.-+-+.|- ++.+|.
T Consensus 47 vLQsLvDD~lV~~eKIgtSnyywsfps~a~~~-~ks~~qeLe~~L~~~~qk~~tl~-e~~en~K~~~e~tEe--r~~el~ 122 (203)
T KOG3433|consen 47 VLQSLVDDGLVIKEKIGTSNYYWSFPSEAICD-RKSVLQELESQLATGSQKKATLG-ESIENRKAGREETEE--RTDELT 122 (203)
T ss_pred HHHHHhccchHHHHHhcccccccccchHHHHH-HHHHHHHHHHHHHHhhhhHhHHH-HHHHHHHhhhhhhHH--HHHHHH
Confidence 3788887532 1223345799998764 55555 88899998887766665 677776543333222 222333
Q ss_pred -HHHHHHHHHHHHHHHHhh-hhccccchhHHHHHHHHHHHHHhhHHHh
Q 008054 103 -AANDEYEEEARLCVFRLK-SLKQGQYRSLLTQAARHHAAQLNFFRKG 148 (579)
Q Consensus 103 -~a~eE~eeEa~lc~frLK-sLKqgq~rsLLtqaaRhhaAQl~fFrkG 148 (579)
+..-.++.+-.|=.-+.| ..--+|-+.++-++-+-++--+|..-+-
T Consensus 123 kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDn 170 (203)
T KOG3433|consen 123 KKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTDN 170 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 111111112222222333 4456777888888888887777777663
No 107
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=46.29 E-value=91 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=24.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 51 ESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 51 ESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
+-+.++|...++.+++-++....|+..++
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~ 84 (156)
T CHL00118 56 EYIRKNLTKASEILAKANELTKQYEQELS 84 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445799999999999999999999984
No 108
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=44.96 E-value=1.1e+02 Score=27.53 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=22.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 55 NELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 55 keLk~veemKkqcDekr~~YE~m~a 79 (579)
++|...++++.+.++....|+..++
T Consensus 43 ~~l~~Ae~~~~ea~~~~~~~e~~L~ 67 (140)
T PRK07353 43 TNRAEAKERLAEAEKLEAQYEQQLA 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999984
No 109
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=44.83 E-value=3e+02 Score=31.80 Aligned_cols=17 Identities=12% Similarity=0.048 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008054 62 DMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 62 emKkqcDekr~~YE~m~ 78 (579)
.|=++|.|||+-|.+-+
T Consensus 35 k~fed~~ek~~r~~ae~ 51 (604)
T KOG3564|consen 35 KDFEDFEEKWKRTDAEL 51 (604)
T ss_pred HHHHHHHHHHhhhhHHH
Confidence 44567788888776654
No 110
>smart00182 CULLIN Cullin.
Probab=44.59 E-value=25 Score=31.84 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHH--------HHHHHHHHHhhcc-ccCCCCCcchhHHHHHH
Q 008054 33 KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNV--------CEYVMAQQREKGK-SKSGKGESVSLQQQLQA 103 (579)
Q Consensus 33 kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~--------YE~m~a~~~EKgr-sk~~K~e~~i~~~ql~~ 103 (579)
.+++.++...-..-|..+|.+|+|++.-++|.++|.++... +..++ +-++= ........++...+|++
T Consensus 33 ~~i~~Lk~~~G~~~~~kle~Ml~Di~~S~~l~~~f~~~~~~~~~~~~~~~~~~V---Ls~~~WP~~~~~~~~~lP~~l~~ 109 (142)
T smart00182 33 NMITKLKQECGYEFTSKLERMFRDISLSKDLNQSFKDMLENNSNKPIIDLNVRV---LTSGYWPTSSTEVEINLPQELED 109 (142)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEE---CCCCCCCCCCCCCceECCHHHHH
Confidence 55677777777777888899999999999999999865321 11111 11110 01112134444448999
Q ss_pred HHHHHHHH
Q 008054 104 ANDEYEEE 111 (579)
Q Consensus 104 a~eE~eeE 111 (579)
+.++|++.
T Consensus 110 ~~~~f~~~ 117 (142)
T smart00182 110 ALEEFEEF 117 (142)
T ss_pred HHHHHHHH
Confidence 99998764
No 111
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=44.09 E-value=2.4e+02 Score=28.52 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH-HHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008054 15 EESRKVLLMLGEVQFELQKLVD-NYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE 93 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d-~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e 93 (579)
...|.+...+|.+|.++..-+. +|...|-+.+. -...+.++.|.+|--.=.||-+|.-|..- ++++.+- +
T Consensus 78 ~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~ka---k~~~~~~-----e 148 (215)
T cd07593 78 SKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKA---KKEDSRL-----E 148 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchhH-----H
Confidence 3589999999999877654333 55555554542 34555667888887777888888665542 2332221 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhh--hccccchhHHHHHHHHHHHHHh
Q 008054 94 SVSLQQQLQAANDEYEEEARLCVFRLKS--LKQGQYRSLLTQAARHHAAQLN 143 (579)
Q Consensus 94 ~~i~~~ql~~a~eE~eeEa~lc~frLKs--LKqgq~rsLLtqaaRhhaAQl~ 143 (579)
- -.. +-++-++|=-|++..+-+-+++ ..+-+...-|-+|---||.||.
T Consensus 149 e-Elr-~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~ 198 (215)
T cd07593 149 E-ELR-RAKAKYEESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSL 198 (215)
T ss_pred H-HHH-HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123 3556666666777666666664 3443333334445445556654
No 112
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=43.87 E-value=4.2e+02 Score=28.03 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh
Q 008054 100 QLQAANDEYEE-EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL 152 (579)
Q Consensus 100 ql~~a~eE~ee-Ea~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL 152 (579)
-++-+.-.+++ .+..-+++||++|.. -+-|-.++---|++.+||...|-.|
T Consensus 189 s~kK~~r~~eKrqaK~~e~klK~~~ar--NeYll~l~a~Na~~~~yy~~dl~~l 240 (253)
T cd07684 189 SVKKIEKMKEKRQAKYSENKLKCTKAR--NDYLLNLAATNAAVSKYYIHDVSDL 240 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444333333 347788999998875 3667777778888999998876543
No 113
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=43.66 E-value=3.8e+02 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHH---HHHhhhhhccCCcHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDN---YRSNIFLTITNPSESLL 54 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~---yr~nI~~tIt~PsESLL 54 (579)
..+|+|..--.|-.++.+|+.++.. ...++.+-+.+|+-.+.
T Consensus 218 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~ 262 (461)
T PRK09470 218 GPQEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQ 262 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHH
Confidence 4578999888888888888888875 36677888888887654
No 114
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=43.45 E-value=1.2e+02 Score=30.29 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhHHHhhhhhhhh-hHHHHHHhhhh
Q 008054 131 LTQAARHHAAQLNFFRKGFKSLEAV-DTHVRLVAERQ 166 (579)
Q Consensus 131 LtqaaRhhaAQl~fFrkGLKsLE~l-ephVk~~ae~~ 166 (579)
-.+++.-+.++..||+.=..-=--+ +..|..+++.-
T Consensus 99 ~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a 135 (206)
T PF14988_consen 99 AEHAEKLQEAESQFLQEKARLEKEASELKILQLGERA 135 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 4566777788899998733221223 55555544443
No 115
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=41.99 E-value=99 Score=34.16 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCCchHHHHHHHHHHhHHH-----HHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 008054 11 LDDDEESRKVLLMLGEVQF-----ELQKLVDNYRSNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREK 84 (579)
Q Consensus 11 lndd~e~g~vll~lgk~q~-----EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EK 84 (579)
+.+++++|..+..|+..=. ||....+++++-||.-...+++.++..-++++ +|- .+ ...+.|
T Consensus 88 ~~~vgd~g~~l~~l~~~l~~~d~d~l~~~~~~f~~Kif~r~~~siqe~~~kYQt~~~~id-----------~I-~~~l~k 155 (386)
T COG3853 88 ITDVGDLGKMLEQLMFILKRFDPDELPSDKKGFLTKIFGRSKSSIQEIFSKYQTIGAQID-----------RI-IESLSK 155 (386)
T ss_pred ccccchHHHHHHHHHHHHhhcCCcccccccchHHHHHHhhhhhHHHHHHHHHHHHHHHHH-----------HH-HHHHHh
Confidence 4466666665555544321 23333445555555555555555555444444 321 11 244555
Q ss_pred ccccCCCCCcchhHHHHH---HHHHHHHHHHHHHHHHhhhhcc
Q 008054 85 GKSKSGKGESVSLQQQLQ---AANDEYEEEARLCVFRLKSLKQ 124 (579)
Q Consensus 85 grsk~~K~e~~i~~~ql~---~a~eE~eeEa~lc~frLKsLKq 124 (579)
|+.+..+.-.+..+ ... +..+..++...+|+-.+++|++
T Consensus 156 ~kd~L~~dn~~Le~-l~~~n~~~~~~L~~yI~agel~~eel~~ 197 (386)
T COG3853 156 GKDELTRDNKMLEL-LYEKNREYFEHLEKYIAAGELKDEELET 197 (386)
T ss_pred hhHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444 333 4444445555666666666655
No 116
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=41.51 E-value=3.8e+02 Score=26.95 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhH
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV 60 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~v 60 (579)
+-...+|..|..-+.-+..++-.+..+|.+.|.-|+..+.+|++.-
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~ 103 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKT 103 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556655555555666777788888888888888888875443
No 117
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=41.07 E-value=1.2e+02 Score=29.28 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=28.7
Q ss_pred hhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008054 42 IFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQ 80 (579)
Q Consensus 42 I~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~ 80 (579)
|.++|--=-+.+-++|...++++++-++..+.||..+..
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~ 94 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALAD 94 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445568999999999999999999999843
No 118
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.72 E-value=2.8e+02 Score=32.75 Aligned_cols=99 Identities=21% Similarity=0.176 Sum_probs=59.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhccCCcH--H-HHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 008054 23 MLGEVQFELQKLVDNYRSNIFLTITNPSE--S-LLNELRTVE----DMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV 95 (579)
Q Consensus 23 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsE--S-LLkeLk~ve----emKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~ 95 (579)
..-..|..|.+=+++.++.+....-..++ - +.+||+.++ .|+...++-++-.++-. .+++++++..-|...+
T Consensus 604 ~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~-~~i~~~~~~~~~s~~L 682 (717)
T PF10168_consen 604 EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ-RQIESQKSPKKKSIVL 682 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccccCCCccC
Confidence 33445667777677776666543322333 2 333777665 55655665555444432 4567776666666677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008054 96 SLQQQLQAANDEYEEEARLCVFRLKSLK 123 (579)
Q Consensus 96 i~~~ql~~a~eE~eeEa~lc~frLKsLK 123 (579)
... |.+.|.+-.-++.+...=.+|.||
T Consensus 683 ~~~-Q~~~I~~iL~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 683 SES-QKRTIKEILKQQGEEIDELVKQIK 709 (717)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677 888888877777766555555443
No 119
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=40.08 E-value=2.5e+02 Score=25.73 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN----ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk----eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
..|.++-.++.+..++ ...+..+|+.-|..-+ ..++ .++..++..-.||..+..|+... ..+++....+
T Consensus 96 ~~~~~~~~i~~~~~~~---~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~---~~~~~~~~~~ 168 (229)
T PF03114_consen 96 KFGEAMQEIEEARKEL---ESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLR---KKKSKSSKEE 168 (229)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---TTSSBTHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccccHH
Confidence 3455555555554443 4444555555554444 4444 44445566667777777777653 1122211112
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhh
Q 008054 92 GESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGF 149 (579)
Q Consensus 92 ~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGL 149 (579)
.-....+ .+.++.+++-+|-..+.-.-..+=.-....++..-..||..=...+.+..
T Consensus 169 ~l~~a~~-~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~ 225 (229)
T PF03114_consen 169 KLEEAKE-EFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQ 225 (229)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222344 67777777776654332222233333445555555666666666655533
No 120
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=39.93 E-value=2.4e+02 Score=29.91 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHH------------------hHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh
Q 008054 12 DDDEESRKVLLMLG------------------EVQFELQKLVDNYRSNIFLTITNPSESLLNELRT 59 (579)
Q Consensus 12 ndd~e~g~vll~lg------------------k~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ 59 (579)
++|++..+++..++ .|..||.| ||.|..-|-.+|.- =+.||+||+.
T Consensus 223 ~~DDI~~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~k-f~~~~~~l~~~~~~-Q~~ll~~i~~ 286 (353)
T cd09236 223 RADDIRPEILREAARLEREYPATEVAPAHFEDLFDKRLAK-YDKDLDAVSEEAQE-QEEILQQIEV 286 (353)
T ss_pred HhcCchHHHHHHHHhhhcccccccccHHHHHHHHHHHHHH-hhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 35666676666543 46678877 99998888777543 3455555554
No 121
>PF12523 DUF3725: Protein of unknown function (DUF3725); InterPro: IPR022199 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF01577 from PFAM. There is a conserved FLE sequence motif.
Probab=39.46 E-value=18 Score=31.42 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=21.6
Q ss_pred CccccccccCCCchHHHHHHHHHHhHHH
Q 008054 2 GSCLMEKTSLDDDEESRKVLLMLGEVQF 29 (579)
Q Consensus 2 GsCLlEk~alndd~e~g~vll~lgk~q~ 29 (579)
|+|.+ .+....+.|+|+.||.+..+.+
T Consensus 10 GAki~-qLv~i~naE~gR~FLEg~~~~R 36 (74)
T PF12523_consen 10 GAKIL-QLVQIGNAEVGRTFLEGNRFRR 36 (74)
T ss_pred chhhh-hHHHhccHHHHHHHHhcchHHH
Confidence 78886 5566678999999999988754
No 122
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.40 E-value=52 Score=38.92 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhh-hccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFL-TITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE 93 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~-tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e 93 (579)
++--++|+-||..|||=-||--.| ++. .|.||.+-...=++-.-..-.+-.+.-+.||.+.+..-..+=++..|++
T Consensus 503 ~~~~~aLlrl~~~q~e~akl~~~~---aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~ 579 (748)
T KOG4151|consen 503 PGGYEALLRLGQQQFEEAKLKWYH---ALAGKIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK 579 (748)
T ss_pred ccHHHHHHHHHHHhchHHHHHHHH---HHhhhcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH
Confidence 445689999999999966665443 444 9999998766544444444444446777899998666577777777777
Q ss_pred cchhH
Q 008054 94 SVSLQ 98 (579)
Q Consensus 94 ~~i~~ 98 (579)
++.+
T Consensus 580 -i~ke 583 (748)
T KOG4151|consen 580 -ILKE 583 (748)
T ss_pred -HHHH
Confidence 5555
No 123
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.07 E-value=1.7e+02 Score=27.71 Aligned_cols=31 Identities=6% Similarity=0.184 Sum_probs=25.3
Q ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 49 PSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 49 PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
=-+-+.++|...++.+++-.+....|+..++
T Consensus 48 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 78 (173)
T PRK13460 48 RASGVQNDINKASELRLEAEALLKDYEARLN 78 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556799999999999999999999884
No 124
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=38.81 E-value=2.6e+02 Score=25.66 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHH--HHHhhhhccccchhHHHHH
Q 008054 57 LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLC--VFRLKSLKQGQYRSLLTQA 134 (579)
Q Consensus 57 Lk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc--~frLKsLKqgq~rsLLtqa 134 (579)
+...+.++.+|+++|..|+.+... -.-..+.. .|+.+..|.|+|..-. .|+-.++- +..+
T Consensus 68 ~~~~~~L~~~~~~k~~~~~~l~~~----------~s~~~l~~-~L~~~~~e~eeeSe~lae~fl~g~~d-------~~~F 129 (150)
T PF07200_consen 68 YEELKELESEYQEKEQQQDELSSN----------YSPDALLA-RLQAAASEAEEESEELAEEFLDGEID-------VDDF 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----------HHHHHHHH-HHHHHHHHHHHHHHHHC-S-SSSHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc----------CCHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCC-------HHHH
Confidence 345557788888888877776511 12344566 7889999999988333 33322322 4555
Q ss_pred HHHHHHHHhhHH
Q 008054 135 ARHHAAQLNFFR 146 (579)
Q Consensus 135 aRhhaAQl~fFr 146 (579)
++.|-.....|+
T Consensus 130 l~~f~~~R~~yH 141 (150)
T PF07200_consen 130 LKQFKEKRKLYH 141 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655554443
No 125
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=38.04 E-value=2.7e+02 Score=24.36 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=33.0
Q ss_pred HHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 39 RSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 39 r~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
+.-|.+.|.-=.+.+.+++...++++++.++..+.|+..++
T Consensus 21 ~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~ 61 (132)
T PF00430_consen 21 YKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLA 61 (132)
T ss_dssp HHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777788888999999999999999999999984
No 126
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.23 E-value=4.8e+02 Score=26.78 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHH
Q 008054 30 ELQKLVDNYRSNIFLTITNPSESLLNELRTVE---------------DMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 30 EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve---------------emKkqcDekr~~YE~m~ 78 (579)
.+..+...+..++.+-|..|+..|+.+++.-. .+-++.++.++.|+..-
T Consensus 78 ~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ac 141 (253)
T cd07676 78 DYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDC 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688889999999999999888888665422 23345566777777643
No 127
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=36.80 E-value=53 Score=36.61 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=53.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH
Q 008054 54 LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQ 133 (579)
Q Consensus 54 LkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtq 133 (579)
-|-|.+||+||--.|+.=+....++ .-+||-|. -|.|++ + ..+++.+-.+||-.+|-.-|+.|= .-=+.-|.+
T Consensus 19 k~Al~GvKqMK~~Mek~eeeh~~Lm-~tL~k~kk--~KeeAl--~-l~~e~e~kLee~e~~Cn~sm~~lW-eECkpCL~~ 91 (436)
T PF01093_consen 19 KNALNGVKQMKTMMEKTEEEHKELM-KTLEKSKK--EKEEAL--K-LANEVEEKLEEEEEVCNESMMALW-EECKPCLKQ 91 (436)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHH--HHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3467899999999988777776665 55555433 244543 2 446888889999999999998662 233456666
Q ss_pred HHHHHHH
Q 008054 134 AARHHAA 140 (579)
Q Consensus 134 aaRhhaA 140 (579)
....|++
T Consensus 92 tCm~FYt 98 (436)
T PF01093_consen 92 TCMRFYT 98 (436)
T ss_pred HhHHHHh
Confidence 5544443
No 128
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=36.39 E-value=1.6e+02 Score=31.07 Aligned_cols=45 Identities=31% Similarity=0.450 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHh----HHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh
Q 008054 13 DDEESRKVLLMLGE----VQFELQKLVDNYRSNIFLTITNPSESLLNELRT 59 (579)
Q Consensus 13 dd~e~g~vll~lgk----~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ 59 (579)
+|+++.+.+...|. |+.||.| ||.|+.-|-.+|.- =+.||++|+.
T Consensus 224 ~DDI~~~ll~~~~~~e~lF~~eL~k-f~~~~~~v~~~~~~-Q~~ll~~i~~ 272 (339)
T cd09238 224 NDNILAKVMATTGSYDALFKEELKK-YDSVREAVSKNISS-QDDLLSRLRA 272 (339)
T ss_pred cCCcHHHHHHhhhhhHHHHHHHHHH-HhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 55666666666555 6668877 88888887777543 3455555544
No 129
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.25 E-value=3.5e+02 Score=30.29 Aligned_cols=128 Identities=21% Similarity=0.257 Sum_probs=68.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH-HHHHHHH-----HH-HHHHHHHHHHHHhhccccCCCC
Q 008054 20 VLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVE-DMKRQCD-----EK-RNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 20 vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve-emKkqcD-----ek-r~~YE~m~a~~~EKgrsk~~K~ 92 (579)
++-.|+.+..+|.+++|.-...+.+. +++++-+|+.+. ++...++ .. ...-+..+ ..+.+-++|.+..
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~----l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL-~~l~~LkrKyg~s 323 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQ----VGNALTEVEEATRELQNYLDELEFDPERLNEIEERL-AQIKRLKRKYGAS 323 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 68888999999998865544444443 445555555554 4444332 22 23444444 4566666666643
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHH---HhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHH
Q 008054 93 ESVSLQQQLQAANDEYEEEARLCVF---RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL 161 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa~lc~f---rLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~ 161 (579)
.+ ++.+-.+++++|-..+.. .+..|++. ..-+......++.+++-.|+ +..+.++-.|..
T Consensus 324 ----~e-~l~~~~~~l~~eL~~l~~~~~~le~L~~e--l~~l~~~l~~~a~~Ls~~R~--~~a~~l~~~v~~ 386 (563)
T TIGR00634 324 ----VE-EVLEYAEKIKEELDQLDDSDESLEALEEE--VDKLEEELDKAAVALSLIRR--KAAERLAKRVEQ 386 (563)
T ss_pred ----HH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 33 555666666666543333 33333322 12233344555777777655 444444444433
No 130
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=36.15 E-value=1.9e+02 Score=26.52 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.8
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 50 SESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 50 sESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
-+.+.++|...++++.+-++..+.|+..+.
T Consensus 37 ~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~ 66 (156)
T PRK05759 37 QKKIADGLAAAERAKKELELAQAKYEAQLA 66 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555789999999999999999999984
No 131
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=36.15 E-value=5.1e+02 Score=26.81 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=68.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhc----cCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 18 RKVLLMLGEVQFELQKLVDNYRSNIFLTI----TNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 18 g~vll~lgk~q~EL~kL~d~yr~nI~~tI----t~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
+..-..|..|..+|.++ -.||+--++-| ..|+-.-=...|..+ |+| .|...|+- |.+...++||-|.|+.-+
T Consensus 64 ~~l~~~L~~fae~la~v-qDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK-~~~~ar~k-Eikq~~~Leklr~k~psd 140 (219)
T PF06730_consen 64 PNLKLGLKNFAECLAKV-QDYRQAEVERLEAKVVEPLSQYGTICKHARDELK-KFNKARNK-EIKQLKQLEKLRQKNPSD 140 (219)
T ss_pred ccHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHccCCcc
Confidence 33444777777778876 67877666553 222211111222222 232 23344443 333337789999998888
Q ss_pred CcchhHH--HHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHH
Q 008054 93 ESVSLQQ--QLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV 159 (579)
Q Consensus 93 e~~i~~~--ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephV 159 (579)
..+|.+. +|+-+.-+...-..-.+=.+-.....+-++|=+=+-.+-..+|-|--|+|-.+-+--.+|
T Consensus 141 r~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i 209 (219)
T PF06730_consen 141 RQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDI 209 (219)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7555432 445444444432221121222222233334444445556667777666554444433333
No 132
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.28 E-value=2.9e+02 Score=28.45 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN----ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG 90 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk----eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~ 90 (579)
...|.++..+|.++.|.-.++. +|.+.-+..-++.-+| .-|.||.-.=.||-+|..+..- ..-||. ...
T Consensus 110 ~~~g~a~~kIa~ar~~~D~~I~---~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka--~~~~k~--~~~ 182 (242)
T cd07600 110 GKYSDAEEKIAEARLEQDQLIQ---KEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSA--EPAEKQ--EAA 182 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccc--cch
Confidence 5789999999999988877765 4555555555554444 6667777777889888877432 111221 111
Q ss_pred CCCcchhHHHHHHHHHHHHHHH-HHHHHHhhhhccccchhHHHHHHHHHHHHHh
Q 008054 91 KGESVSLQQQLQAANDEYEEEA-RLCVFRLKSLKQGQYRSLLTQAARHHAAQLN 143 (579)
Q Consensus 91 K~e~~i~~~ql~~a~eE~eeEa-~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~ 143 (579)
..+--.-+.++.++. |++ .+....|+.-++-+-...|..|---||.||.
T Consensus 183 ~~e~E~aEdef~~a~----E~a~~~M~~il~~~e~i~~L~~fv~AQl~Yh~~~~ 232 (242)
T cd07600 183 RVEVETAEDEFVSAT----EEAVELMKEVLDNPEPLQLLKELVKAQLAYHKTAA 232 (242)
T ss_pred HHHHHHHHHHHHHhH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222343333 333 1222225555555545555555555666664
No 133
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=34.73 E-value=2.5e+02 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=22.7
Q ss_pred HHhhhhhhhhhHHHHHHhhhhcccccccCCCCC
Q 008054 146 RKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDN 178 (579)
Q Consensus 146 rkGLKsLE~lephVk~~ae~~hIDy~fSgLedd 178 (579)
-+.+=+.|+|+.-|+.+-.. =+||.|. +|-+
T Consensus 136 sk~FIT~ENLd~~IeeALdn-p~~YNfa-ID~~ 166 (170)
T PF14943_consen 136 SKNFITRENLDAAIEEALDN-PVDYNFA-IDLE 166 (170)
T ss_pred hcCcCCHHhHHHHHHHHHcC-Cccccee-eCCC
Confidence 34456788999999877775 7899997 5444
No 134
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=34.37 E-value=4.6e+02 Score=25.77 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHh
Q 008054 19 KVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNEL 57 (579)
Q Consensus 19 ~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL 57 (579)
.+|-.|-.-...+......+..+|.+.|.-|+..+.+++
T Consensus 65 ~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~ 103 (251)
T cd07653 65 KAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444556666667777777777777776644
No 135
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=33.93 E-value=28 Score=43.31 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhh
Q 008054 103 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGF 149 (579)
Q Consensus 103 ~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGL 149 (579)
-.+|+|++|.-+-.=-+-+-=..+|--||-+||+-|-+-...++-+-
T Consensus 1265 ~~~~~y~~e~~v~~e~i~~~m~~~Flk~L~~aI~k~~~k~~~~~~~~ 1311 (1640)
T KOG0262|consen 1265 LPREEYQEEYDVRPEDIEEVMENRFLKLLERAIKKKLKKAKYTRGMS 1311 (1640)
T ss_pred cCHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccc
Confidence 35788888764333333334456777889999966666666666553
No 136
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=33.73 E-value=81 Score=32.73 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCchHHHHHHHHHHh---------HHHHHHHHHHHHHHhhhhhccCCcHHHHHHhh
Q 008054 12 DDDEESRKVLLMLGE---------VQFELQKLVDNYRSNIFLTITNPSESLLNELR 58 (579)
Q Consensus 12 ndd~e~g~vll~lgk---------~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk 58 (579)
++|++..+.+...++ |+.||.| ||.|..-|-.+|.- =+.||++|+
T Consensus 221 ~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~k-f~~~~~~i~~~~~~-Q~~ll~~i~ 274 (342)
T cd08915 221 RNNDILPKLITEYKKNGTTEFEDLFEEHLKK-FDKDLTYVEKTKKK-QIELIKEID 274 (342)
T ss_pred hhcCCcHHHHHHhhccccchhHHHHHHHHHH-HhHHHHHHHHHHHH-HHHHHHHHH
Confidence 345555555555543 5667755 88887777766433 334444443
No 137
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.56 E-value=3.1e+02 Score=32.41 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~ 78 (579)
+.+.+.+|--.++....++.+|+..+-...... -.++...+..+++.++.++.||..+
T Consensus 495 p~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~--------e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 495 PHFIIEQAKTFYGEFKEEINVLIEKLSALEKEL--------EQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888887765443321 1133333344444444444555444
No 138
>smart00030 CLb CLUSTERIN Beta chain.
Probab=33.39 E-value=90 Score=31.92 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=51.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 008054 56 ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAA 135 (579)
Q Consensus 56 eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaa 135 (579)
-|.+||.||--.|+.-+.-..++ .-+||-|.+ |.+++... +++.+...||..+|-=-+..|=..=-.=|=+.-.
T Consensus 27 Al~GvKqMK~~mer~~eeh~~ll-~tLe~~kk~--KeeAlk~~---~e~e~kL~E~~~vCnetm~alWeECKpCLk~tCm 100 (206)
T smart00030 27 ALKGVKQIKTLIEKTNKERKSLL-STLEEAKKK--KEEALKDT---RESEEKLKESQGVCNETMMALWEECKPCLKQTCM 100 (206)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 47799999999998888777776 555655443 56665554 4666777888888866665443333333445566
Q ss_pred HHHH
Q 008054 136 RHHA 139 (579)
Q Consensus 136 Rhha 139 (579)
|+|+
T Consensus 101 kfYs 104 (206)
T smart00030 101 KFYA 104 (206)
T ss_pred HHHH
Confidence 7666
No 139
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=33.29 E-value=5.8e+02 Score=26.58 Aligned_cols=91 Identities=12% Similarity=0.198 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhHHHH---HHHHHHHHHHhhhhhccCCc-----HHHHHHhhh-HHHHH-----------------HHHH
Q 008054 15 EESRKVLLMLGEVQFE---LQKLVDNYRSNIFLTITNPS-----ESLLNELRT-VEDMK-----------------RQCD 68 (579)
Q Consensus 15 ~e~g~vll~lgk~q~E---L~kL~d~yr~nI~~tIt~Ps-----ESLLkeLk~-veemK-----------------kqcD 68 (579)
++.|+.---+-.+--| +..+.-.+..+|.+.+.-++ |.+.+++.+ .+|.| ++.+
T Consensus 57 ~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~ 136 (258)
T cd07680 57 PQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELE 136 (258)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445444444444333 44455556666666666666 444444432 22222 3456
Q ss_pred HHHHHHHHHHHHHHhhc---cccCCCCCcchhHHHHHHHHHH
Q 008054 69 EKRNVCEYVMAQQREKG---KSKSGKGESVSLQQQLQAANDE 107 (579)
Q Consensus 69 ekr~~YE~m~a~~~EKg---rsk~~K~e~~i~~~ql~~a~eE 107 (579)
++|+.||..- +.+++ +-.++|.+..+...|+.-+++-
T Consensus 137 ~sKk~Ye~~C--ke~~~A~~~~~~a~~d~~~s~~q~eK~~~k 176 (258)
T cd07680 137 AAKKAYHLAC--KEEKLAMTREANSKAEQSVTPEQQKKLQDK 176 (258)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhhcccCCCCHHHHHHHHHH
Confidence 8888888754 22221 2345666655555466544333
No 140
>COG5283 Phage-related tail protein [Function unknown]
Probab=32.82 E-value=1.7e+02 Score=36.65 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=65.7
Q ss_pred hccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008054 45 TITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQ 124 (579)
Q Consensus 45 tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKq 124 (579)
--+.+.|+|-.|+++|-..-++-.+.-+.|..-+ .+.|.-++.-.++-+...+ |++...+|+++-. |-
T Consensus 68 K~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~-tqae~~~~sas~q~~~a~~-q~~~~~~~iq~~~----~~------ 135 (1213)
T COG5283 68 KQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQY-TQAENKLRSLSGQFGVASE-QLMLQQKEIQRLQ----YA------ 135 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhchhhH-HHHHHHHHHHHHH----HH------
Confidence 3455666666677777655555555555555554 6777776666666676666 6766655555422 21
Q ss_pred ccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhh
Q 008054 125 GQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE 164 (579)
Q Consensus 125 gq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae 164 (579)
|.++.||-+||.+.|.++=..++.+.--|..+-+
T Consensus 136 ------is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~e 169 (1213)
T COG5283 136 ------ISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRE 169 (1213)
T ss_pred ------HHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhH
Confidence 4677889999999998887777776666554443
No 141
>PHA00658 putative lysin
Probab=32.53 E-value=1.7e+02 Score=34.47 Aligned_cols=152 Identities=15% Similarity=0.031 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHH
Q 008054 28 QFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAAND 106 (579)
Q Consensus 28 q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~e 106 (579)
-.|-..-||+|.+-|.+|+-.+.. -. =.+.+++|--||-..=+-||.- |+.-=+.+-.+|.+.. +|++|++
T Consensus 118 ~deY~~~Fd~~~~eIagTL~nd~q--R~~F~~~aq~~r~Qf~~q~~~HEls-----E~kaYe~gq~qG~ls~-~l~eia~ 189 (720)
T PHA00658 118 ADEYGDNLKKQLDEISGTLGNDAQ--RRAFALHSNDILTSFRGQAVQHEAS-----EYKTYALSTSEGIQST-ALRDIAL 189 (720)
T ss_pred hhhHHHHHHHHHHHHHhhcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHHH-HHHHHhh
Confidence 345566799999999998655432 22 2456778888888887777763 4444455667888888 9999888
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhhcccccccCCCCCCCCCC-CC
Q 008054 107 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDG-ED 185 (579)
Q Consensus 107 E~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~hIDy~fSgLedd~~d~d-~~ 185 (579)
.|-.- |.+.=-+..+|+ ++.-+++-| =|+-|-+|...++..+.-|+--..|.||+||--.+ -|
T Consensus 190 ~~~Dp-~aiq~ai~~~ka----~i~~~~q~~-----------Gks~ee~E~~~rK~~s~Ah~~a~~s~~~~~d~~~a~aY 253 (720)
T PHA00658 190 NWNNP-DAINSAVDRIKA----ETFRQAQLL-----------GKSAEWQEAQARKLTSNAHKIALMSALEQNNPTYASAY 253 (720)
T ss_pred ccCCh-HHHHHHHHHHHH----HHHHHHHHc-----------CCChHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHH
Confidence 76322 222222222221 333322211 36788999999999999999999999966643211 22
Q ss_pred ---cc-ccCCCcceeeeccccc
Q 008054 186 ---SY-YANEAGELSFDYRDNK 203 (579)
Q Consensus 186 ---~~-d~~ddgELSFDY~~n~ 203 (579)
|. ++.-|+-+-.+=++++
T Consensus 254 ~N~Yq~~M~~ddv~~V~~~iTk 275 (720)
T PHA00658 254 LNKYSGQMDADDILTVRGHITK 275 (720)
T ss_pred HHHHHHhcCCccceecccccch
Confidence 22 3445555555555553
No 142
>PF04803 Cor1: Cor1/Xlr/Xmr conserved region; InterPro: IPR006888 Cor1 is a component of the chromosome core in the meiotic prophase chromosomes []. Xlr is a lymphoid cell specific protein []. Xmr is abundantly transcribed in testis in a tissue-specific and developmentally regulated manner. The protein is located in the nuclei of spermatocytes, early in the prophase of the first meiotic division, and later becomes concentrated in the XY nuclear subregion where it is in particular associated with the axes of sex chromosomes [].
Probab=32.42 E-value=2.9e+02 Score=26.11 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHH
Q 008054 24 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 103 (579)
Q Consensus 24 lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~ 103 (579)
|.+.-.+-+|++..+|.--.++ |+++++|-.||=+.=.+.|.-. .. ++..
T Consensus 69 l~n~~~qqQK~~qq~r~~q~Qr-----------lk~iK~l~eqflK~le~le~~~------------------~~-~l~~ 118 (130)
T PF04803_consen 69 LSNIFQQQQKLFQQARIVQNQR-----------LKAIKELHEQFLKSLEDLEKSH------------------DN-QLSS 118 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------HH-HHHh
Confidence 3344445555666666555555 6666666666655544444322 23 6677
Q ss_pred HHHHHHHHHHH
Q 008054 104 ANDEYEEEARL 114 (579)
Q Consensus 104 a~eE~eeEa~l 114 (579)
+++|+.+|.++
T Consensus 119 ~q~Elkkem~~ 129 (130)
T PF04803_consen 119 IQSELKKEMAM 129 (130)
T ss_pred HHHHHHHHHhc
Confidence 88888888654
No 143
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=31.79 E-value=65 Score=34.92 Aligned_cols=56 Identities=25% Similarity=0.246 Sum_probs=43.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhH----------HHHHHHHHHHHHHHHHHH
Q 008054 23 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV----------EDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 23 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~v----------eemKkqcDekr~~YE~m~ 78 (579)
-|-+||.-|...=+.|.+++.+..+.=+|..-+-||+| .|.=...|++-+.|+.-.
T Consensus 205 DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 205 DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY 270 (366)
T ss_pred HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence 47888888988899999999999988888888888764 466666666666665544
No 144
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=31.74 E-value=2.1e+02 Score=27.02 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=28.8
Q ss_pred hhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 42 IFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 42 I~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
|.++|-.=-+.+.++|...|+.|++-++....|+..++
T Consensus 35 i~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~ 72 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEAQRLREEAQALLADVKAERE 72 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566799999999999999999999984
No 145
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.68 E-value=5.6e+02 Score=25.95 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCcchhHHHHH---
Q 008054 27 VQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKS-KSGKGESVSLQQQLQ--- 102 (579)
Q Consensus 27 ~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrs-k~~K~e~~i~~~ql~--- 102 (579)
-=.+|++..++|.+||.. ..+.++.+++.-=|+.-|++=-|.-++.+...+ ....+--+ =..--+.|+.+ +|.
T Consensus 30 ~~~~~e~~~nsfl~~~~p-~~~~s~~vidqdYT~~al~~f~~~l~e~~~~ll-~~~~~~~~~~~~pL~~f~k~-~i~~~K 106 (214)
T cd07609 30 SLDELERVINSFLSHLLP-PLLVSGGVIDQDYTPLALKRFGDGLKDFWGGVL-SALKGNDSLILDPLRSFVKS-DIRPYK 106 (214)
T ss_pred HHHHHHHHHHHHHHhcCC-ccccccchhCchhHHHHHHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHH-HHHHHH
Confidence 345788889999999999 778999999976677777766565555554444 22221100 00011233333 333
Q ss_pred HHHHHHHHHH-HHHHHHhh--hhcccc-chhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 103 AANDEYEEEA-RLCVFRLK--SLKQGQ-YRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 103 ~a~eE~eeEa-~lc~frLK--sLKqgq-~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
+.+..||++. .++.++-| ++.-.| ..+|-.-+.--|.+..+|+.-.|-.+-.+
T Consensus 107 e~rk~Fd~~q~kyD~~L~r~~~~sk~K~p~~l~Eda~qL~e~Rk~Y~~aSLDyv~qi 163 (214)
T cd07609 107 ELRKNFEYYQRKYDSMLARYVAQSKTKEPSSLREDAFQLFEARKAYLKASLDLVIAI 163 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777776 56666666 443333 44666666677888888888877665544
No 146
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=31.56 E-value=3.6e+02 Score=27.64 Aligned_cols=133 Identities=11% Similarity=0.134 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH-HHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----ccc-
Q 008054 15 EESRKVLLMLGEVQFELQKLVD-NYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKG----KSK- 88 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d-~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKg----rsk- 88 (579)
...|.+.-++|.++.+.-..+. ++...+.+++-.-+-.+.|..|.|+-.-=.||-+|.-|..- +++-+ ..|
T Consensus 84 ~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka---~k~~~~~~~~~K~ 160 (244)
T cd07595 84 KLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAA---HKSSGGQGAAAKV 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhc---ccccccccccccc
Confidence 4689999999999888766554 34444444444444555667888888888899999988641 11111 111
Q ss_pred -CCCCCcchhHHHHHHHHHHHHHHH--HHHHHHhhhhcc-ccchhHHHHHHHHHHHHHhhHHHhhhhhhh
Q 008054 89 -SGKGESVSLQQQLQAANDEYEEEA--RLCVFRLKSLKQ-GQYRSLLTQAARHHAAQLNFFRKGFKSLEA 154 (579)
Q Consensus 89 -~~K~e~~i~~~ql~~a~eE~eeEa--~lc~frLKsLKq-gq~rsLLtqaaRhhaAQl~fFrkGLKsLE~ 154 (579)
..+.| .+ +.+.-+|+..+++ .|+.|+-++..+ ++...|+..-..||..=......-+..|+.
T Consensus 161 ~~l~eE---~e-~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~ 226 (244)
T cd07595 161 DALKDE---YE-EAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQE 226 (244)
T ss_pred chHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 23 4555555555555 677776665554 445666666677776666666665555543
No 147
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=31.44 E-value=1.8e+02 Score=29.65 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHHHHHHH------HhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 31 LQKLVDNYR------SNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 31 L~kL~d~yr------~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
||.|||.=. -++|---+||++.+-|---..+.++++||+--.+--+.. ..+++++++..|-
T Consensus 49 lQqlVDDgvV~~EK~GtsN~YWsF~s~~~qk~~~~~~~l~~~~~~~kqdi~t~~-e~i~~ek~~r~k~ 115 (209)
T COG5124 49 LQQLVDDGVVSVEKCGTSNIYWSFKSQTLQKLYDSSELLKKKIQEVKQDIATYK-EEIDKEKATRRKK 115 (209)
T ss_pred HHHHhhcCceeeeeeccceeEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhhhcc
Confidence 666776221 123334589999999843456789999999888777776 8888888654443
No 148
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=2.3e+02 Score=33.74 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHH
Q 008054 39 RSNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA 103 (579)
Q Consensus 39 r~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~ 103 (579)
.-+.....|-|+++|||.|+... .||..++|-|+..+-.- .+.++..-+-.|-..+++. ++.+
T Consensus 150 t~~~~~l~t~Pl~~llkkl~a~~e~~ra~~~~vra~~~~l~-e~v~ns~t~~~r~~~~~~~-~~~q 213 (717)
T KOG3726|consen 150 TADVEGLVTDPLAMLLKKLRALLENVRAVMREVRAMLLDLD-EKVTNSVTIIRRHYRVIAG-LSNQ 213 (717)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccchhhhhcc-hhhh
Confidence 33445567889999999888766 99999999999888775 7777777777777777777 5554
No 149
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.34 E-value=5.8e+02 Score=25.67 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=27.8
Q ss_pred hhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 42 IFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 42 I~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
|.++|-.=-+.+.++|...++.|++-++..+.|+..++
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 67 (246)
T TIGR03321 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNE 67 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445556799999999999999999999884
No 150
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.33 E-value=4.9e+02 Score=24.84 Aligned_cols=38 Identities=5% Similarity=0.074 Sum_probs=29.2
Q ss_pred hhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 42 IFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 42 I~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
|...|-.=-+.+.++|...++.+++-++....||..+.
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 80 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLK 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555666899999999999999999999983
No 151
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.24 E-value=1.9e+02 Score=27.67 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 008054 30 ELQKLVDNYRSNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQR 82 (579)
Q Consensus 30 EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~ 82 (579)
|+..|=|+|+-+=|.- =++|. +--+.|=-.|.+|-.|+..|.
T Consensus 29 ~~R~lGD~YVkdEFrr-----------Hk~vnp~~~~~FlteW~~Ya~~l~qql 71 (125)
T KOG4100|consen 29 ELRALGDQYVKDEFRR-----------HKTVNPLEAQGFLTEWERYAVALSQQL 71 (125)
T ss_pred HHHHHHHHHHHHHHHH-----------hccCChHHHHHHHHHHHHHHHHHHHHh
Confidence 7888889997665532 12222 223567888999999985543
No 152
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.89 E-value=2.1e+02 Score=28.18 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 008054 59 TVEDMKRQCDEKRNVCEY 76 (579)
Q Consensus 59 ~veemKkqcDekr~~YE~ 76 (579)
.++..|+-|++..++.+.
T Consensus 127 ~l~kskk~Y~~~~ke~~~ 144 (251)
T cd07653 127 QLEKSKKAYEKAFKEAEK 144 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555444
No 153
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.53 E-value=5.6e+02 Score=25.25 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhh------hhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHH
Q 008054 31 LQKLVDNYRSNI------FLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAA 104 (579)
Q Consensus 31 L~kL~d~yr~nI------~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a 104 (579)
||.|||.-+-+. +---.||++...+=-+.++.+++++++.++..+... ..+|+. +.++.+..-|+ .+-+-
T Consensus 36 lq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~-~~i~~~--~~~r~~~~eR~-~~l~~ 111 (188)
T PF03962_consen 36 LQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELE-EKIEEA--KKGREESEERE-ELLEE 111 (188)
T ss_pred HHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HhcccccHHHH-HHHHH
Confidence 566666432221 222479999999877777888888888888766654 555555 44566665566 44444
Q ss_pred HHHHHHHHHHHHHHhhhhcc--ccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHH
Q 008054 105 NDEYEEEARLCVFRLKSLKQ--GQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL 161 (579)
Q Consensus 105 ~eE~eeEa~lc~frLKsLKq--gq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~ 161 (579)
.+++++|..-+.=-|+.++. .....-+.+.+.....-.|.+.+- ++.|..|++.
T Consensus 112 l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDN---I~~l~~~~~~ 167 (188)
T PF03962_consen 112 LEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDN---IFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 44444443222211221111 122334555555666667777774 4555666654
No 154
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=29.25 E-value=2.9e+02 Score=25.04 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhHHHhh
Q 008054 132 TQAARHHAAQLNFFRKGF 149 (579)
Q Consensus 132 tqaaRhhaAQl~fFrkGL 149 (579)
.+.|+.|+-++...++-+
T Consensus 40 ~~~A~~~lk~~k~~~k~~ 57 (171)
T PF03357_consen 40 KERAKIYLKRKKRLEKQL 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 155
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=29.23 E-value=6.6e+02 Score=25.97 Aligned_cols=140 Identities=15% Similarity=0.243 Sum_probs=91.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC-
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN--ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS- 89 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk--eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~- 89 (579)
.+..++++-+.||..-.-+.|=-+|+.--+...+.-|+-.+.. =|..-.-|++-||.-|..-|.-- .-.-|.+.|-
T Consensus 55 ~~~~LsrAa~~yG~a~~~mEkEre~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa-~eV~RRq~k~r 133 (209)
T cd07607 55 VNTALSRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQA-AEVARRRSKDK 133 (209)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 5677899999999997777777777777777778888888887 67777789999999999998864 2222222221
Q ss_pred ---CCCCcchhHHHHHHHHHHHHHHH-HHHH------HHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 90 ---GKGESVSLQQQLQAANDEYEEEA-RLCV------FRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 90 ---~K~e~~i~~~ql~~a~eE~eeEa-~lc~------frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
+-.|..+ -|+.+.--|+|-. .|-+ .-+-+...-|-|=-||.++---.|-.+||++.+..|+.|+
T Consensus 134 es~~~~e~~~---KL~~AE~Kl~elks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~ 207 (209)
T cd07607 134 ESGGNPDNAA---KLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLH 207 (209)
T ss_pred ccCCChHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222 2233333343332 1111 1122444555666677777778888889988888877765
No 156
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=28.86 E-value=1.5e+02 Score=31.15 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=31.2
Q ss_pred cCCCchHHHHHHHHHHh--------HHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhH
Q 008054 10 SLDDDEESRKVLLMLGE--------VQFELQKLVDNYRSNIFLTITNPSESLLNELRTV 60 (579)
Q Consensus 10 alndd~e~g~vll~lgk--------~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~v 60 (579)
-.++|+++...++..++ |..||.| ||-|..-|-.+|.- =+.|++||+..
T Consensus 227 k~~~DDI~~~ll~~~~~~~~~~e~lF~~eL~k-f~p~~~~l~~~~~~-Q~~ll~el~~~ 283 (356)
T cd09237 227 KIHNDDISDILILNSKSKSEIEKQLFPEELEK-FKPLQNRLEATIFK-QSSLINELKIE 283 (356)
T ss_pred HHhccchHHHHHHhcccccchHHHHHHHHHHH-cchHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34466677777766643 5568877 88888777776543 35555555543
No 157
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=28.50 E-value=3.8e+02 Score=31.48 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccccCCCCCcchhHHHHHHH
Q 008054 26 EVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRN-VCEYVMAQQREKGKSKSGKGESVSLQQQLQAA 104 (579)
Q Consensus 26 k~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~-~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a 104 (579)
..++|+..+++.|+......... |++.+..|=.||.+.=+ +|.+. .+ .|-++.-...|+.+
T Consensus 188 al~~e~~~~~~~~~~~~~~~~~~-------d~~~l~vll~qCr~~v~~v~~~~---------~~--~G~Sv~l~~~L~Rl 249 (643)
T PF10136_consen 188 ALQREVEAFLEAYRQQDEDPDSE-------DLKHLRVLLDQCREQVDRVRKHL---------EK--YGVSVSLVFLLERL 249 (643)
T ss_pred HHHHHHHHHHHHHhhcccccccc-------cHHHHHHHHHHHHHHHHHHHHhc---------cc--cCeeHHHHHHHHHH
Confidence 45889999999998887654322 78888899999975422 22211 11 14444445567777
Q ss_pred HHHHHHHHHHHHHHh--hhhccccchhHHHHHHHHHHHHHhh
Q 008054 105 NDEYEEEARLCVFRL--KSLKQGQYRSLLTQAARHHAAQLNF 144 (579)
Q Consensus 105 ~eE~eeEa~lc~frL--KsLKqgq~rsLLtqaaRhhaAQl~f 144 (579)
....+.-+.|...+. ..-+..+...|+.++++.++.+.+.
T Consensus 250 ~Q~L~Ri~~Ll~~l~~~~~~~~~~~~~L~~~Lv~~~~~r~si 291 (643)
T PF10136_consen 250 RQQLDRIELLLDLLVDDSPDRRRAIVRLFKELVRAECRRNSI 291 (643)
T ss_pred HHHHHHHHHHHHHHcccCchhhHHHHHHHHHHHHHHHHhccH
Confidence 788888888888888 6788888999999999999988764
No 158
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.47 E-value=5e+02 Score=24.31 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=44.1
Q ss_pred cCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008054 47 TNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCV 116 (579)
Q Consensus 47 t~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~ 116 (579)
+.-.|.+-...+.++++++++++...-|++++--..|| .+ ++.+...+.++-..||-
T Consensus 57 ~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK------------~E-~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 57 MEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK------------SE-EVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------------HH-HHHHHHHHHHHHHHHHH
Confidence 44455555566778899999999999999999878777 45 77788888887777764
No 159
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=28.45 E-value=4.1e+02 Score=26.96 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHH
Q 008054 19 KVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNE 56 (579)
Q Consensus 19 ~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLke 56 (579)
.+|..|-.-+.-+..+...+..+|.+-|.-|+..+.+|
T Consensus 64 ~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e 101 (258)
T cd07655 64 TAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKE 101 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455566666777777766666666543
No 160
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.25 E-value=7.9e+02 Score=30.74 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH--------HHhhhhhccCCcHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHhhc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNY--------RSNIFLTITNPSESLLNELRTVE--DMKRQCDEKRNVCEYVMAQQREKG 85 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~y--------r~nI~~tIt~PsESLLkeLk~ve--emKkqcDekr~~YE~m~a~~~EKg 85 (579)
--|++--..+.-+.||..+...| ..|+-..|. =+.-||.|-++-. .||--||+--+... .+.+|.
T Consensus 1027 ~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~-~l~kl~~eaq~~Q~k~LK~~~e~e~kElk----~~l~kk 1101 (1189)
T KOG1265|consen 1027 NAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQIS-LLRKLLSEAQTNQTKALKESLEKETKELK----KKLDKK 1101 (1189)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45666666667777777776655 334444432 1334444433322 44444444333222 233444
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHH-----HHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHH
Q 008054 86 KSKSGKGESVSLQQQLQAANDEYEEEA-----RLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRK 147 (579)
Q Consensus 86 rsk~~K~e~~i~~~ql~~a~eE~eeEa-----~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrk 147 (579)
|.+..|++..|+. ....|.+-.|- ++++=-.|-|+++|.+.- .|+.+-|.+++++..+
T Consensus 1102 r~e~ik~~~~~kd---K~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~-e~L~k~~~~~leql~e 1164 (1189)
T KOG1265|consen 1102 RMEDIKVDKVIKD---KAERERRKRELNSSNIKEFVEERKRLAEKQSKRQ-EQLVKKHLEVLEQLAE 1164 (1189)
T ss_pred HHHhhhhcccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4444454444444 11111111121 455555565555554431 3444455555444443
No 161
>PLN02413 choline-phosphate cytidylyltransferase
Probab=28.13 E-value=5.9e+02 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCcchhHHHHH
Q 008054 69 EKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ 102 (579)
Q Consensus 69 ekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~ 102 (579)
+.++.|+. +..+||.++.-=+-++....+|+
T Consensus 164 k~y~~Y~~---Rn~~rg~~~~~l~v~~~~~~~~~ 194 (294)
T PLN02413 164 KDYNQYVM---RNLARGYSRKDLGVSYVKEKRLR 194 (294)
T ss_pred HHHHHHHH---HHHHhcCCHHhcCchhhhhHHHH
Confidence 34444544 56777776665555665554443
No 162
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=27.42 E-value=5e+02 Score=23.99 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHhhccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHhhHHHhhhhhhh
Q 008054 78 MAQQREKGKS-KSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQG--QYRSLLTQAARHHAAQLNFFRKGFKSLEA 154 (579)
Q Consensus 78 ~a~~~EKgrs-k~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqg--q~rsLLtqaaRhhaAQl~fFrkGLKsLE~ 154 (579)
+++-||=.|. +.|||-+.+.. |++..+++-.+-+.-..-.|..|.+. +....+.............+....+.++.
T Consensus 61 lNAsIEAaraGe~G~gF~vvA~-eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 139 (213)
T PF00015_consen 61 LNASIEAARAGEAGRGFAVVAD-EIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEE 139 (213)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhcccchhHHHHHH-HHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhh
Confidence 3488999888 89999999999 99988888887775555555544332 33344444444444555555555555555
Q ss_pred hhHHHHHH
Q 008054 155 VDTHVRLV 162 (579)
Q Consensus 155 lephVk~~ 162 (579)
+...++.+
T Consensus 140 i~~~~~~i 147 (213)
T PF00015_consen 140 IAESVEEI 147 (213)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhHH
Confidence 55555443
No 163
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.91 E-value=1.4e+02 Score=31.03 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhcc-------ccchhHHHHHHH------HHHHHHhhHHHhhhhhhhhhHHHHHHhhhhcc
Q 008054 110 EEARLCVFRLKSLKQ-------GQYRSLLTQAAR------HHAAQLNFFRKGFKSLEAVDTHVRLVAERQHI 168 (579)
Q Consensus 110 eEa~lc~frLKsLKq-------gq~rsLLtqaaR------hhaAQl~fFrkGLKsLE~lephVk~~ae~~hI 168 (579)
||.+|++-+|..||+ -|.-.|++.+++ ||-||.-+.++ +.|+.+..||++|-.+.||
T Consensus 4 eE~qlle~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE--~ALk~a~~~i~eLe~ri~~ 73 (233)
T COG3416 4 EEKQLLENLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQE--QALKKASTQIKELEKRIAI 73 (233)
T ss_pred HHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 566666655554443 455678877765 88999999987 7888999999999999887
No 164
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=26.69 E-value=3.5e+02 Score=26.89 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=61.7
Q ss_pred HHHHHHhhhhhccCCcHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHH
Q 008054 35 VDNYRSNIFLTITNPSESLLNELRTV--EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEA 112 (579)
Q Consensus 35 ~d~yr~nI~~tIt~PsESLLkeLk~v--eemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa 112 (579)
+++|...|... -++|+.+ .|++.++=+--+.+.-+++++++-=|....+-+++..+ ...-+..+...||
T Consensus 49 yknyk~ki~eL--------ke~lK~~~NAEleekll~lq~lfq~Kl~aKL~aLKAak~~i~~~~d~-d~~~~k~~Iw~ea 119 (160)
T PF03978_consen 49 YKNYKKKINEL--------KEDLKDVSNAELEEKLLKLQKLFQDKLEAKLAALKAAKQKIEGIQDK-DQECAKAKIWTEA 119 (160)
T ss_pred HHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHHH
Confidence 77888887642 2377777 37766655444445455555554444455566777665 5555777888888
Q ss_pred HHHHHHhh---hhccccchhHHHHHHHH
Q 008054 113 RLCVFRLK---SLKQGQYRSLLTQAARH 137 (579)
Q Consensus 113 ~lc~frLK---sLKqgq~rsLLtqaaRh 137 (579)
-+.+--+| +.-.|.|..+-+.|+.+
T Consensus 120 k~~Gv~vk~~~s~~t~~g~~~sk~av~q 147 (160)
T PF03978_consen 120 KLVGVTVKFSGSNTTGKGDEMSKDAVEQ 147 (160)
T ss_pred HhcCeeeeecccccCccHHHhHHHHHHH
Confidence 77765555 78889998777777766
No 165
>PRK00106 hypothetical protein; Provisional
Probab=26.30 E-value=2.6e+02 Score=32.01 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHH-HHHHHHHH----HHHHHH----HHhhhhccccchhH
Q 008054 60 VEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ-AANDEYEE----EARLCV----FRLKSLKQGQYRSL 130 (579)
Q Consensus 60 veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~-~a~eE~ee----Ea~lc~----frLKsLKqgq~rsL 130 (579)
+++.++.++++.+.|+.++. +...+.-+-.|++.+ |-. .+.+++++ |+...+ -..|+=-.++.+.+
T Consensus 134 Le~reeeLee~~~~~~~~~~----~~~~~Le~~a~lt~~-eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~i 208 (535)
T PRK00106 134 LTDKSKHIDEREEQVEKLEE----QKKAELERVAALSQA-EAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDL 208 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666542 223355566677766 544 33444444 442221 12234445778888
Q ss_pred HHHHHHHHHHHH
Q 008054 131 LTQAARHHAAQL 142 (579)
Q Consensus 131 LtqaaRhhaAQl 142 (579)
|.+|+-.|++-+
T Consensus 209 i~~aiqr~a~~~ 220 (535)
T PRK00106 209 LAQAMQRLAGEY 220 (535)
T ss_pred HHHHHHHhcchh
Confidence 888887777643
No 166
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=26.24 E-value=5.8e+02 Score=25.85 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=53.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhh--------hccCCcHHHHH----HhhhHHHHHHHHHHHHHHHH----HHHHHHHh
Q 008054 20 VLLMLGEVQFELQKLVDNYRSNIFL--------TITNPSESLLN----ELRTVEDMKRQCDEKRNVCE----YVMAQQRE 83 (579)
Q Consensus 20 vll~lgk~q~EL~kL~d~yr~nI~~--------tIt~PsESLLk----eLk~veemKkqcDekr~~YE----~m~a~~~E 83 (579)
.=+.|-++=.-|+.-|.|+-|+-+. .++.|- +++. -+++++.||+=|..-|..-+ +++ .|--
T Consensus 56 ~EmQlrrvLhdir~t~q~l~q~~~~~g~~~~~~~~~~~~-sv~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~l~-~QQa 133 (179)
T PF14723_consen 56 TEMQLRRVLHDIRDTLQNLSQYPVMRGSDLNADPYSTQR-SVRELYSCTVQELQQMRRSLNSFREQMMDLELHLM-RQQA 133 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccccccch-hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Confidence 4456666666666666665443321 244444 4443 57778888988887776433 222 2211
Q ss_pred hccccCCCCCcchhHHHHHHHHHHHHHHHHHH----HHHhhhhccc
Q 008054 84 KGKSKSGKGESVSLQQQLQAANDEYEEEARLC----VFRLKSLKQG 125 (579)
Q Consensus 84 Kgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc----~frLKsLKqg 125 (579)
--=+--.-.|...-+ |||..++...+|.+.. +-||..|++|
T Consensus 134 lvy~hMSeeER~Eae-QLQsLR~avRqElqELE~QL~DRl~~l~e~ 178 (179)
T PF14723_consen 134 LVYRHMSEEEREEAE-QLQSLRSAVRQELQELEFQLEDRLLQLREQ 178 (179)
T ss_pred HHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111112223334455 7885555555555444 4455566654
No 167
>PRK12704 phosphodiesterase; Provisional
Probab=25.96 E-value=2.7e+02 Score=31.46 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHH-----HHHHHHHHHHHHHHHH----hhhhccccchhHHH
Q 008054 62 DMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ-----AANDEYEEEARLCVFR----LKSLKQGQYRSLLT 132 (579)
Q Consensus 62 emKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~-----~a~eE~eeEa~lc~fr----LKsLKqgq~rsLLt 132 (579)
+.+++++++.+.|+.++ ++...+.-+-.+++.+ |-. .+.+|+..|+...+=. .|+=-.++.+.+|.
T Consensus 121 ~re~eLe~~~~~~~~~~----~~~~~~l~~~a~lt~~-ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~ 195 (520)
T PRK12704 121 QKQQELEKKEEELEELI----EEQLQELERISGLTAE-EAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILA 195 (520)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666554 3333455566677766 543 3444444444332222 23444567888888
Q ss_pred HHHHHHHHH
Q 008054 133 QAARHHAAQ 141 (579)
Q Consensus 133 qaaRhhaAQ 141 (579)
+|+-.|++-
T Consensus 196 ~a~qr~a~~ 204 (520)
T PRK12704 196 QAIQRCAAD 204 (520)
T ss_pred HHHHhhcch
Confidence 888877754
No 168
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=25.91 E-value=2.2e+02 Score=33.61 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=70.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhccCC-------cHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HhhccccC
Q 008054 18 RKVLLMLGEVQFELQKLVDNYRSNIFLTITNP-------SESLLNELRTVEDMKRQCDEKRNVCEYVMAQQ-REKGKSKS 89 (579)
Q Consensus 18 g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~P-------sESLLkeLk~veemKkqcDekr~~YE~m~a~~-~EKgrsk~ 89 (579)
.+|--|-|-+-+|+.+|++.|-..+..+++-= +++.|.|=+.-+ -..+.-|+|-|.|+.+| +||--|+.
T Consensus 3 erVs~lAgsIYREfErlIh~~~Ee~VKeLMPLVVNVLEnLD~v~~EnqEhe---vELElLrEDNEQl~tqYErEkalR~q 79 (832)
T KOG2077|consen 3 ERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHE---VELELLREDNEQLITQYEREKALRTQ 79 (832)
T ss_pred hhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhccchhH---HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45667788888999999999866555554421 445554333222 22345678999999555 55544443
Q ss_pred CCCCcchhHHHHHHHHHHHH-HHH-HHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHH-hhhhhhhhhHHHH
Q 008054 90 GKGESVSLQQQLQAANDEYE-EEA-RLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRK-GFKSLEAVDTHVR 160 (579)
Q Consensus 90 ~K~e~~i~~~ql~~a~eE~e-eEa-~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrk-GLKsLE~lephVk 160 (579)
.-+--+.-+.+|..-+-|.+ +|. -=++-|--+||.|-.-+=.+.+-..---|.-=|+. --+.-|-+.-||.
T Consensus 80 ~eqKfie~eD~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k~ef~~LhqR~tem~rthv~ 153 (832)
T KOG2077|consen 80 LEQKFIEGEDQLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEMPRTHVS 153 (832)
T ss_pred HHhhhcchHHHHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhHHH
Confidence 33211222224443333332 222 22333444777776655444443333333222322 2223444555554
No 169
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=25.61 E-value=6.6e+02 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=11.6
Q ss_pred cHHHHHHhh-hHHHHHHHHHHHHHHHHH
Q 008054 50 SESLLNELR-TVEDMKRQCDEKRNVCEY 76 (579)
Q Consensus 50 sESLLkeLk-~veemKkqcDekr~~YE~ 76 (579)
.+.|+..|+ .+|+=++-+....+.|+.
T Consensus 82 ~~~li~pLe~~~e~d~k~i~~~~K~y~k 109 (219)
T PF08397_consen 82 HSELIQPLEKKLEEDKKYITQLEKDYEK 109 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344554333 334333334444554543
No 170
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.48 E-value=3.2e+02 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.8
Q ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 008054 49 PSESLLNELRTVEDMKRQCDEKRNVCEYVMAQ 80 (579)
Q Consensus 49 PsESLLkeLk~veemKkqcDekr~~YE~m~a~ 80 (579)
=-+.+.++|...+++|.+-++....||..++.
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~ 116 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAAVAAYEQELAQ 116 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668999999999999999999999853
No 171
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=1.1e+02 Score=34.53 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=22.9
Q ss_pred hhhhhhhhhHHHHHHhhhhccccc--ccCCCCCCCCCCCC
Q 008054 148 GFKSLEAVDTHVRLVAERQHIDYQ--FSGLEDNDGEDGED 185 (579)
Q Consensus 148 GLKsLE~lephVk~~ae~~hIDy~--fSgLedd~~d~d~~ 185 (579)
+|++.+...|.-.+...+++--+. =|.-||||.|||+|
T Consensus 243 ~l~~~~~~tp~s~~r~~~~n~sv~~~ss~~edD~Dddd~d 282 (514)
T KOG3130|consen 243 CLKDVASSTPFSGQRNSQLNCSVNGSSSYHEDDDDDDDDD 282 (514)
T ss_pred HhhcCCCcCcchhhhhhcccccccCCCCcccccccccccc
Confidence 488888888888777766654433 33444444444433
No 172
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.41 E-value=7.6e+02 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhH
Q 008054 100 QLQAANDEYEEEARLCVFRLK-SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT 157 (579)
Q Consensus 100 ql~~a~eE~eeEa~lc~frLK-sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lep 157 (579)
++++...+++++.+=|.=.++ +| .|+|+| +..++-...++.=..+-|+.+|.-++
T Consensus 740 ~i~~~~~~~~~~~~~le~~~~~eL-~~~GvD--~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 740 EIAAAKQEAKEQLKELEQQYNQEL-AGKGVD--PERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC--HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444555555555544444444 66 577777 44444444444444444444444333
No 173
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.29 E-value=1.6e+02 Score=27.34 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008054 34 LVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 82 (579)
Q Consensus 34 L~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~ 82 (579)
+|+.|-+++.|-...+.|| |+.|.--++-|+.||.| |..+
T Consensus 57 ~ll~~~ivllkel~~~Aes--------eeake~irq~rq~~Ekl-Ag~l 96 (103)
T COG4847 57 LLLLYLIVLLKELAVIAES--------EEAKESIRQVRQEVEKL-AGDL 96 (103)
T ss_pred HHHHHHHHHHHHHhhhccc--------HHHHHHHHHHHHHHHHH-HHHH
Confidence 4788877766655444443 57777777888999987 3443
No 174
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=24.98 E-value=4e+02 Score=30.61 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhhhccCCcHHHH---H-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHH
Q 008054 32 QKLVDNYRSNIFLTITNPSESLL---N-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDE 107 (579)
Q Consensus 32 ~kL~d~yr~nI~~tIt~PsESLL---k-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE 107 (579)
++++-+..++|+++|..|-+.|- + +|.....+.+=++-.+.+|.+|.+ |+-...+ ...++..=+=+++-.++
T Consensus 84 ~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~--i~~~~~~--~~~~~~~M~Av~er~~~ 159 (701)
T PF09763_consen 84 QKLLLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKA--IRPDLEK--LDPGLGQMRAVKERREE 159 (701)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh--ccccccc--CCCcHHHHHHHHHHHHH
Confidence 56666778889999999865442 2 444444466667788889999963 3222222 22222111146788899
Q ss_pred HHHHHHHHHHHhhhhccccc
Q 008054 108 YEEEARLCVFRLKSLKQGQY 127 (579)
Q Consensus 108 ~eeEa~lc~frLKsLKqgq~ 127 (579)
|++.+++|.=||+.-=...+
T Consensus 160 ~~~~~~~F~~r~~~~l~~~F 179 (701)
T PF09763_consen 160 YEKVSDKFCKRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988884333333
No 175
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=24.91 E-value=2.4e+02 Score=27.48 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccCCCCCcchhHHHHHHHHHHHHHHH-HHHHHHhhhh
Q 008054 59 TVEDMKRQCDEKRNVCEYVMAQQREKGK-----SKSGKGESVSLQQQLQAANDEYEEEA-RLCVFRLKSL 122 (579)
Q Consensus 59 ~veemKkqcDekr~~YE~m~a~~~EKgr-----sk~~K~e~~i~~~ql~~a~eE~eeEa-~lc~frLKsL 122 (579)
-|+..|+.|++.|..-...+....++-| ..-++++..-.+.++|.+.++|.++. .+|.-.-|+|
T Consensus 109 lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~~~Kekei 178 (179)
T cd00520 109 LVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKEL 178 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788888877655554432222222 22466666666678999999998887 5555444443
No 176
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=24.77 E-value=9e+02 Score=27.13 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHHHhHH------------HHHHHHHHHHHHhhhhhccCCcH
Q 008054 12 DDDEESRKVLLMLGEVQ------------FELQKLVDNYRSNIFLTITNPSE 51 (579)
Q Consensus 12 ndd~e~g~vll~lgk~q------------~EL~kL~d~yr~nI~~tIt~PsE 51 (579)
+-..+.|++|+.-|+-. .+||.+|..+|..+.+-=..|+.
T Consensus 194 ~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~ 245 (424)
T PF03915_consen 194 NASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSP 245 (424)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCH
Confidence 34467888888777653 35777777777777777666654
No 177
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.60 E-value=1.5e+02 Score=32.49 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=17.6
Q ss_pred HHHhhhhhhhhhHHHHHHhhhhcc
Q 008054 145 FRKGFKSLEAVDTHVRLVAERQHI 168 (579)
Q Consensus 145 FrkGLKsLE~lephVk~~ae~~hI 168 (579)
||+|.=-|+..=.||+.|+.+|-|
T Consensus 326 ~r~G~i~l~~yLr~VR~lsReQF~ 349 (365)
T KOG2391|consen 326 LRDGVIDLDQYLRHVRLLSREQFI 349 (365)
T ss_pred HhcCeeeHHHHHHHHHHHHHHHHH
Confidence 567777777777788888777755
No 178
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=24.59 E-value=7.3e+02 Score=28.58 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 23 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 23 ~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
.+.....++...+.+.+.++...+....+.... +....+++++.+++.++.|+..+
T Consensus 191 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (968)
T TIGR02956 191 DLIEVDLDLAERLNELRLLALRVLNTIDDTKTSQDLAHINQLDEEFNRLVMILSRRV 247 (968)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555555444443333 45566677788888888877665
No 179
>PRK09835 sensor kinase CusS; Provisional
Probab=24.50 E-value=6.3e+02 Score=26.09 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHH---HHHhhhhhccCCcHHHHH
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDN---YRSNIFLTITNPSESLLN 55 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~---yr~nI~~tIt~PsESLLk 55 (579)
.+|+|..--.|-....+|..++.. +..++.+-|..|+..+..
T Consensus 238 ~dEl~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~ 282 (482)
T PRK09835 238 PIELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLIT 282 (482)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 468888777777777777777654 567888889999888765
No 180
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=24.45 E-value=3e+02 Score=29.40 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=68.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH---hh---hhcc
Q 008054 51 ESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFR---LK---SLKQ 124 (579)
Q Consensus 51 ESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~fr---LK---sLKq 124 (579)
..|+.+|+.+-+|++..|++.-.+|-+. .||+=.-- +-- ....+-++--.+||..+ || +|.+
T Consensus 47 ~~l~s~L~QIt~iQaeI~q~nlEielLk---leKeTADl------tH~---~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~ 114 (277)
T PF15003_consen 47 SDLFSRLRQITNIQAEIDQLNLEIELLK---LEKETADL------THP---DYLAEKCEALQSMNSHLEAVLKEKDRLRQ 114 (277)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHH---hhcchHhh------hCH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3467789999999999999988888865 66642211 111 11122222222444332 22 2211
Q ss_pred c----cchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhhccccccc
Q 008054 125 G----QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFS 173 (579)
Q Consensus 125 g----q~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~hIDy~fS 173 (579)
. -..+-|.=-|.||.-=-.||.....++++|+-|++.|.--.|+|-..+
T Consensus 115 RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~~ 167 (277)
T PF15003_consen 115 RLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENPS 167 (277)
T ss_pred HHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 1 223334444667777778999999999999999999988888765544
No 181
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=24.11 E-value=3.1e+02 Score=25.49 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=24.3
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 50 SESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 50 sESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
-+.+.++|...++.+++-++....|+.+++
T Consensus 35 ~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~ 64 (159)
T PRK09173 35 ADRIKNELAEARRLREEAQQLLAEYQRKRK 64 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455688999999999999999999984
No 182
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.41 E-value=2.9e+02 Score=23.93 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHH-HHHHH
Q 008054 61 EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEA-RLCVF 117 (579)
Q Consensus 61 eemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa-~lc~f 117 (579)
+|-+.++|++.+.|..-+ .+--.+ ++-+...+|+. .+...+++|=+.| +|-+|
T Consensus 16 eD~~gny~eA~~lY~~al-e~~~~e--kn~~~k~~i~~-K~~~~a~~yl~RAE~Lk~~ 69 (75)
T cd02680 16 EDEKGNAEEAIELYTEAV-ELCINT--SNETMDQALQT-KLKQLARQALDRAEALKES 69 (75)
T ss_pred hhHhhhHHHHHHHHHHHH-HHHHHh--cChhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 499999999999998877 444444 35555667777 7777777777766 44444
No 183
>PRK01919 tatB sec-independent translocase; Provisional
Probab=23.21 E-value=5.7e+02 Score=25.61 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 008054 19 KVLLMLGEVQFELQKLVDNYRSNIFLT 45 (579)
Q Consensus 19 ~vll~lgk~q~EL~kL~d~yr~nI~~t 45 (579)
.+.-++|++-.++++.+.+..+.|...
T Consensus 27 ~~aRtlGk~i~k~Rr~~~d~K~ev~~E 53 (169)
T PRK01919 27 RVARTAGALFGRAQRYINDVKAEVSRE 53 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666665555555433
No 184
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=23.16 E-value=3.2e+02 Score=28.12 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN----ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSG 90 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk----eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~ 90 (579)
...|.+.-.+|.++.+ ++.+--+|.+.-|..-+|+-+| +.|.||.-.=.||-+|.-|.. ++.+-.|. .
T Consensus 96 ~~~g~a~~kia~~~~~---~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k---Ak~~~~~~--~ 167 (229)
T cd07616 96 IKCGETQKQIGTADRE---LIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKK---AKVAEARA--A 167 (229)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcchhhc--c
Confidence 4789999999999886 5555555555555555666665 566777666678888876643 11211111 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHhh--hhccccchhHHHHHHHHHHHHHh
Q 008054 91 KGESVSLQQQLQAANDEYEEEARLCVFRLK--SLKQGQYRSLLTQAARHHAAQLN 143 (579)
Q Consensus 91 K~e~~i~~~ql~~a~eE~eeEa~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~ 143 (579)
-.+-+ . ..++-+++=.|.+..|-+-|+ .-.+-+-..-|-.|---||.||.
T Consensus 168 ~e~el--r-~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~ 219 (229)
T cd07616 168 AEQEL--R-ITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCY 219 (229)
T ss_pred hHHHH--H-HHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 12211 1 123334444445545666666 33333223334445555666664
No 185
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=23.02 E-value=76 Score=35.59 Aligned_cols=49 Identities=20% Similarity=0.070 Sum_probs=32.8
Q ss_pred HhhhhcccccccCCCCCCCCCCCCccccCCCcceeeecccccccccccc
Q 008054 162 VAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVS 210 (579)
Q Consensus 162 ~ae~~hIDy~fSgLedd~~d~d~~~~d~~ddgELSFDY~~n~~~~~~~~ 210 (579)
++..=|-||.=|+-||++...+.+.+...|...++||-++|.+..+|-.
T Consensus 224 l~~~g~~d~~ss~~ed~g~pe~~~~dkh~ds~d~a~~~~i~e~~~~v~~ 272 (487)
T KOG4672|consen 224 LKPPGPPDGLSSNFEDSGEPEEEGHDKHYDSIDLAPDNRINENITSVPL 272 (487)
T ss_pred CCCCCCCccccCCCCCCCCccccccccccccccccchhccccccccccc
Confidence 4556688888888888876555443334444458999899988666433
No 186
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=22.94 E-value=2.3e+02 Score=25.72 Aligned_cols=28 Identities=11% Similarity=0.270 Sum_probs=23.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 52 SLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 52 SLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
.+.++|...++++.+-++..+.|+..+.
T Consensus 30 ~I~~~l~~A~~~~~ea~~~~~e~~~~l~ 57 (147)
T TIGR01144 30 KIADGLASAERAKKEAALAQKKAQVILK 57 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688999999999999999999884
No 187
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=22.35 E-value=8.5e+02 Score=27.48 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHHhhccccCCCCCcch---------hHHHHHHHHHHHHHHHHHHHHHh
Q 008054 80 QQREKGKSKSGKGESVS---------LQQQLQAANDEYEEEARLCVFRL 119 (579)
Q Consensus 80 ~~~EKgrsk~~K~e~~i---------~~~ql~~a~eE~eeEa~lc~frL 119 (579)
.+.||.+++-.|++.-. .+.|+...-+||+.|++++--.|
T Consensus 213 Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel 261 (561)
T KOG1103|consen 213 LKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAEL 261 (561)
T ss_pred HhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888777776422 22244456667777776544333
No 188
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.29 E-value=4.1e+02 Score=24.34 Aligned_cols=15 Identities=7% Similarity=-0.031 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008054 64 KRQCDEKRNVCEYVM 78 (579)
Q Consensus 64 KkqcDekr~~YE~m~ 78 (579)
...+++||..+....
T Consensus 31 ~~~~ekKw~li~~~~ 45 (187)
T PF06371_consen 31 NLPPEKKWQLIQQHR 45 (187)
T ss_dssp TS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHH
Confidence 358899999887765
No 189
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=22.24 E-value=1.3e+02 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008054 62 DMKRQCDEKRNVCEYVMAQQREKG 85 (579)
Q Consensus 62 emKkqcDekr~~YE~m~a~~~EKg 85 (579)
+|+|+.|-+++.|+.++.++.|..
T Consensus 8 ~L~R~~~~~~~~Y~~Ll~r~~e~~ 31 (82)
T PF13807_consen 8 RLQRDVEIKRELYETLLQRYEEAR 31 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999985555543
No 190
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=22.23 E-value=4.3e+02 Score=25.26 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=23.0
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 50 SESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 50 sESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
-+.+.++|...++.+++-.+....|+..+.
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~ 84 (167)
T PRK08475 55 INKISKRLEEIQEKLKESKEKKEDALKKLE 84 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455788888888888888888888873
No 191
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.09 E-value=6.5e+02 Score=23.51 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 51 ESLLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 51 ESLLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
+.+.++|...++.+.+-++....|+..++
T Consensus 42 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~ 70 (164)
T PRK14473 42 RRIEESLRDAEKVREQLANAKRDYEAELA 70 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788999999999999999999884
No 192
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=22.05 E-value=3.5e+02 Score=28.75 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhccccCCCCCcchhHHHHHHHHHHHHHHH-HHHHHHhhhh
Q 008054 60 VEDMKRQCDEKRNVCEYVMA---QQREKGKSKSGKGESVSLQQQLQAANDEYEEEA-RLCVFRLKSL 122 (579)
Q Consensus 60 veemKkqcDekr~~YE~m~a---~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa-~lc~frLKsL 122 (579)
++.+|+.++|.++.--.++. .++-|.++.-++++..-.+.||+++++.|..+. -||.=+.|+|
T Consensus 194 aK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~~~~D~vkkae~~l~~l~k~~v~~ld~llkskeKel 260 (263)
T KOG4759|consen 194 AKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKSLSEDEVKKAEAELQKLAKDAVNKLDDLLKSKEKEL 260 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777664444331 333444444666777766669999999999998 7888888865
No 193
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=21.95 E-value=8.2e+02 Score=24.61 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=21.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhh
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRT 59 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~ 59 (579)
...+|..+=...--+......|..++. .|.-++-+|.+|+..
T Consensus 63 ~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~~~e~ 104 (234)
T cd07652 63 FSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAKTVEK 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344444444444444444445555553 566666666665543
No 194
>PF00709 Adenylsucc_synt: Adenylosuccinate synthetase; InterPro: IPR001114 Adenylosuccinate synthetase (6.3.4.4 from EC) plays an important role in purine biosynthesis, by catalysing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterised from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present: one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins []. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein [].; GO: 0000287 magnesium ion binding, 0004019 adenylosuccinate synthase activity, 0005525 GTP binding, 0006164 purine nucleotide biosynthetic process, 0005737 cytoplasm; PDB: 3HID_A 1DJ3_B 2D7U_A 1DJ2_A 1P9B_A 1LON_A 1MF0_A 1LOO_A 1LNY_B 2DGN_A ....
Probab=21.86 E-value=92 Score=34.46 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=54.7
Q ss_pred hccCCcHHHHHHhhhHHHHH-----HHHHHHHH----HHHHHHHHHHh--hccccCCCCCcchhHHHHHHHHHHHHHHHH
Q 008054 45 TITNPSESLLNELRTVEDMK-----RQCDEKRN----VCEYVMAQQRE--KGKSKSGKGESVSLQQQLQAANDEYEEEAR 113 (579)
Q Consensus 45 tIt~PsESLLkeLk~veemK-----kqcDekr~----~YE~m~a~~~E--Kgrsk~~K~e~~i~~~ql~~a~eE~eeEa~ 113 (579)
-..+-.+.|++|++..++.- +-+=-.|- .|+.++.+..| +|+.++|-.-.-|-. =|+.-+.
T Consensus 69 GvVidp~~l~~Ei~~L~~~g~~~~~rl~Is~rahiv~p~H~~lD~~~E~~~g~~~iGTTgrGIGp--------~y~dk~~ 140 (421)
T PF00709_consen 69 GVVIDPEALLEEIEELESKGVDVRSRLFISDRAHIVTPYHKALDRLREEARGKGKIGTTGRGIGP--------AYADKVA 140 (421)
T ss_dssp TBEEEHHHHHHHHHHHHCTTGTHGGTEEEETTSEEE-HHHHHHHHHHHHHCHHTSSSTSSTTHHH--------HHHHHHT
T ss_pred CEEECHHHHHHHHHHHHhcCCCcccceEeeCceEEecHHHHHhhHHHHHHhccccccCcCCChHH--------Hhhhhcc
Confidence 33445678888887776322 11111222 68888777778 444455544444443 3555555
Q ss_pred HHHHHhhhhc-cccchhHHHHHHHHHHHHH
Q 008054 114 LCVFRLKSLK-QGQYRSLLTQAARHHAAQL 142 (579)
Q Consensus 114 lc~frLKsLK-qgq~rsLLtqaaRhhaAQl 142 (579)
-...|+..|. ...++.-|.+++++|.+++
T Consensus 141 R~gir~~DL~~~~~l~~kl~~~~~~~~~~~ 170 (421)
T PF00709_consen 141 RRGIRVGDLLDPEVLREKLKQILDEKNRLL 170 (421)
T ss_dssp T-S-BGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 5577777775 6678888999999887766
No 195
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=21.69 E-value=8.8e+02 Score=24.82 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=30.8
Q ss_pred hhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008054 42 IFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKG 85 (579)
Q Consensus 42 I~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKg 85 (579)
|.+.|--=-+.+.++|...++.|++-.+.++.|+.++ ...+++
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l-~~a~~e 72 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQ-QSLEQQ 72 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444434445556689999999999999999999998 444443
No 196
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=21.68 E-value=9.4e+02 Score=30.66 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=36.6
Q ss_pred HHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHH--HHHhhhhccc
Q 008054 114 LCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV--RLVAERQHID 169 (579)
Q Consensus 114 lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephV--k~~ae~~hID 169 (579)
+--|+.+.|-+.=-.+|-+==++-|..|-..-+..|..|+.|+--+ ...|++|-.|
T Consensus 1249 iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~d 1306 (1439)
T PF12252_consen 1249 INQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKED 1306 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3345555555554455555557788888888888888888888766 2345555444
No 197
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.56 E-value=3.6e+02 Score=26.61 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 008054 57 LRTVEDMKRQCDEKRNVCEYV 77 (579)
Q Consensus 57 Lk~veemKkqcDekr~~YE~m 77 (579)
++.|+..|+-|+.+-+.+|..
T Consensus 120 ~~~l~KaK~~Y~~~c~~~e~~ 140 (236)
T cd07651 120 EKYLEKAREKYEADCSKINSY 140 (236)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 345556777777777766643
No 198
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.32 E-value=1.8e+03 Score=28.19 Aligned_cols=73 Identities=25% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhh---hcccccc
Q 008054 100 QLQAANDEYEEEARLCVFRLKSLKQG-QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAER---QHIDYQF 172 (579)
Q Consensus 100 ql~~a~eE~eeEa~lc~frLKsLKqg-q~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~---~hIDy~f 172 (579)
+|.+-.--||+|...+.-++..||++ |-.-+|.|-..----+.+--++=+++|+++..|-++|-++ |.|+|+=
T Consensus 534 eLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~ 610 (1195)
T KOG4643|consen 534 ELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDP 610 (1195)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 55566667888888888888899984 6667888877766666777777889999999999999887 6777765
No 199
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.30 E-value=5.8e+02 Score=27.61 Aligned_cols=92 Identities=18% Similarity=0.271 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q 008054 62 DMKRQCDEKRNVCEYVMAQQR------EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAA 135 (579)
Q Consensus 62 emKkqcDekr~~YE~m~a~~~------EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaa 135 (579)
-|.+-|+..|+-|+.-+.++. +||=-=..|+=.-|+. -+...++|.|--.++..|-++ .|..+-.++..+
T Consensus 222 ~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsr-LV~RL~deIE~~~~~v~fave---~~~d~~~vk~vv 297 (336)
T PF05055_consen 222 SVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISR-LVDRLEDEIEHMKALVDFAVE---RGEDEEAVKEVV 297 (336)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHh---cCccchhHHHHH
Confidence 567788888888887653332 2322222222222333 344778888888888888775 344456677888
Q ss_pred HHHHHHHhhHHHhhhhhhhhhHHHH
Q 008054 136 RHHAAQLNFFRKGFKSLEAVDTHVR 160 (579)
Q Consensus 136 RhhaAQl~fFrkGLKsLE~lephVk 160 (579)
|...--..-|++ .||.||-||-
T Consensus 298 ~el~k~~~~f~~---qleELeehv~ 319 (336)
T PF05055_consen 298 KELKKNVESFTE---QLEELEEHVY 319 (336)
T ss_pred HHHHHhHHHHHH---HHHHHHHHHH
Confidence 887776666655 5777778874
No 200
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.29 E-value=6.3e+02 Score=28.96 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHh
Q 008054 129 SLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA 163 (579)
Q Consensus 129 sLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~a 163 (579)
+.|-+..+-|-|=.-+--++-|.||+|.-..-.+|
T Consensus 360 d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 360 DILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666777777788888888876655444
No 201
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=21.18 E-value=82 Score=33.19 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHH
Q 008054 128 RSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 160 (579)
Q Consensus 128 rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk 160 (579)
-+|..+.+.+||+|. |||.-.++|+..-.|+-
T Consensus 38 ~~l~~s~~~~~a~~r-~~r~d~~~L~k~p~hl~ 69 (263)
T KOG2818|consen 38 KNLELSKAALHAAQR-LFRTDFSSLKKGPKHLA 69 (263)
T ss_pred hhHHHHHHHHHHHHH-Hhhcchhhhhhcchhhe
Confidence 467899999999999 99999999998877764
No 202
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.97 E-value=1.3e+02 Score=34.69 Aligned_cols=53 Identities=28% Similarity=0.496 Sum_probs=31.1
Q ss_pred CCCCCCCccCCCCCCCCCCCcc---ccccccCCCCCCCCCCCCCCCCCccccccCCcCC
Q 008054 431 PQTKTSPRVSPTASPPLVSSPR---ISELHELPRPPNAFATKPAKSSGLVGHSAPLMFR 486 (579)
Q Consensus 431 ~~~s~sPkvSP~~SPp~~SSPr---IsELHELPRPP~~~~~~~~~~~gLVghSaPLv~~ 486 (579)
+.+|.+|...|-..=+++-=|+ -.|-|.+|.||.|.++...--+|.| -||+++
T Consensus 61 pspsp~pp~~pettltpivlp~kkqriek~k~~~ppp~~ap~tshtp~pv---e~llsr 116 (900)
T KOG4425|consen 61 PSPSPEPPLAPETTLTPIVLPHKKQRIEKHKGPLPPPNAAPTTSHTPGPV---EPLLSR 116 (900)
T ss_pred CCCCCCCCCCCccccCccccchhhhHhhcCCCCCCCCccCCccCCCCCch---HHHHhh
Confidence 3344444444433333344443 4689999999999998754433434 466644
No 203
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.87 E-value=94 Score=30.59 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008054 72 NVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQ 124 (579)
Q Consensus 72 ~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKq 124 (579)
+|+|.|+++-||++ .|... ||+| .|.+.+|.|=+-.-|..|||
T Consensus 3 eD~EsklN~AIERn--------alLE~-ELdE-KE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 3 EDFESKLNQAIERN--------ALLES-ELDE-KENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHH--------HHHHH-HHHH-HHHHHHCH------------
T ss_pred HHHHHHHHHHHHHh--------HHHHH-HHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 58899999999985 34444 8865 66666666622222225554
No 204
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=20.73 E-value=4.2e+02 Score=27.91 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=45.8
Q ss_pred HHHhHHHHHHHHHHHHHHh--hhhhccCCcHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcch
Q 008054 23 MLGEVQFELQKLVDNYRSN--IFLTITNPSESLLNEL-RTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS 96 (579)
Q Consensus 23 ~lgk~q~EL~kL~d~yr~n--I~~tIt~PsESLLkeL-k~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i 96 (579)
+||++..-+.+++..|.+- -++.|..=+++=-.+| +.+..|.+-|++-|+.|...- .++.-|+.+...-+..+
T Consensus 78 lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~-~~I~ag~~~~~~l~~~~ 153 (333)
T PF05816_consen 78 LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELE-KYIAAGELKLEELEAEL 153 (333)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 6888888999999999542 1222222222222222 334466777888888888764 88888887766655543
No 205
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.62 E-value=1.8e+02 Score=32.22 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHH--HHHhh---------ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHH
Q 008054 68 DEKRNVCEYVMA--QQREK---------GKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQ 133 (579)
Q Consensus 68 Dekr~~YE~m~a--~~~EK---------grsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtq 133 (579)
+++=+-|++++. +..|+ .|++.++|-|..-+ ++.+.-.+|++=+.|.- .++.- .++.+.|+-+
T Consensus 361 ~~~~~~~~~ii~SMt~~Er~~p~~~~~sR~~Ria~GsG~~~~-~v~~ll~~~~~~~~~~~-~~~~~-~~~~~~~~~~ 434 (437)
T PRK00771 361 EEKLKKYKAIMDSMTEEELENPEIINASRIRRIARGSGTTVE-DVRELLKYYKMMKKAMK-QLKKG-KGKMGKLMKQ 434 (437)
T ss_pred HHHHHHHHHHHHcCCHHHHhCcccccHHHHHHHHccCCCCHH-HHHHHHHHHHHHHHHHH-HhcCC-CchHHHHHHh
Confidence 345567888886 45553 24468999998888 99999999999887764 23332 3777777755
No 206
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=5.3e+02 Score=27.35 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHH
Q 008054 57 LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAAR 136 (579)
Q Consensus 57 Lk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaR 136 (579)
.+++++-|.+.|+-|+-|+--| + -..+ ++.++.+|-|+++++-. -| .
T Consensus 155 vr~~~e~k~~~d~Ey~rfqkeI-~--------------~~~t-esd~iveEeeed~~l~r-ei----------------e 201 (264)
T KOG3032|consen 155 VRGIKEVKPDIDDEYKRFQKEI-Q--------------DDLT-ESDSIVEEEEEDAALTR-EI----------------E 201 (264)
T ss_pred hhhccccchhHHHHHHHHHHHH-H--------------HHHH-HHHHHHHHHHHHHHHHH-HH----------------H
Confidence 4567788999999999888766 1 0123 55678888887776421 12 2
Q ss_pred HHHHHHhhHHHhhhhhhhhhHH-HHHHhhhhccccc
Q 008054 137 HHAAQLNFFRKGFKSLEAVDTH-VRLVAERQHIDYQ 171 (579)
Q Consensus 137 hhaAQl~fFrkGLKsLE~leph-Vk~~ae~~hIDy~ 171 (579)
.---|+.++++ +|.|+.. .+.++...-++-.
T Consensus 202 eidEQi~~~kk----vekl~~qK~ellnkkRe~~~k 233 (264)
T KOG3032|consen 202 EIDEQISYKKK----VEKLKRQKMELLNKKREKTSK 233 (264)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccc
Confidence 23457766655 5555543 4555666666544
No 207
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=20.35 E-value=28 Score=27.96 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=17.2
Q ss_pred hhHHHhhhhhhhhhHHHHHHhhhhcc
Q 008054 143 NFFRKGFKSLEAVDTHVRLVAERQHI 168 (579)
Q Consensus 143 ~fFrkGLKsLE~lephVk~~ae~~hI 168 (579)
.+|.+|+++||.|+.+=..|+..|.|
T Consensus 17 ~w~~~G~rtl~Dl~~~~~~Lt~~Q~i 42 (52)
T PF10391_consen 17 KWYAKGIRTLEDLRKSKSKLTWQQQI 42 (52)
T ss_dssp HHHHTT--SHHHHHHGGCGS-HHHHH
T ss_pred HHHHhCCCCHHHHhhhhccCCHHHHH
Confidence 47789999999997632277777776
No 208
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.25 E-value=3.5e+02 Score=29.85 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=21.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 008054 53 LLNELRTVEDMKRQCDEKRNVCEYVMA 79 (579)
Q Consensus 53 LLkeLk~veemKkqcDekr~~YE~m~a 79 (579)
+.++|...++.+++.++....||..++
T Consensus 37 I~~~L~eAe~a~~ea~~~~~~~e~~L~ 63 (445)
T PRK13428 37 VRQQLAESATAADRLAEADQAHTKAVE 63 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678888888888888888888874
No 209
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.11 E-value=67 Score=28.50 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=23.2
Q ss_pred hhhhhhhhHHHHHHhhhhccc------ccccCCCCCC
Q 008054 149 FKSLEAVDTHVRLVAERQHID------YQFSGLEDND 179 (579)
Q Consensus 149 LKsLE~lephVk~~ae~~hID------y~fSgLedd~ 179 (579)
+.+-|.++.=+..|++++.|| |++++|+||+
T Consensus 17 ~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEg 53 (86)
T cd06409 17 LRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEG 53 (86)
T ss_pred ecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCC
Confidence 344577788889999999887 5677886654
No 210
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=20.05 E-value=1e+02 Score=33.55 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=15.5
Q ss_pred cccCCCcceeeecccccccccccccCCCcccc
Q 008054 187 YYANEAGELSFDYRDNKQGLDVVSTSRKSMEV 218 (579)
Q Consensus 187 ~d~~ddgELSFDY~~n~~~~~~~~~sr~smel 218 (579)
+++|+||+++. ||=- +.++.+-|||
T Consensus 293 deeneeGDfTV-YECP------GLAPTGeMEV 317 (341)
T PF06809_consen 293 DEENEEGDFTV-YECP------GLAPTGEMEV 317 (341)
T ss_pred cccccCCCeeE-EeCC------CCCCCCceee
Confidence 34566666664 5544 4677788884
Done!