Query 008054
Match_columns 579
No_of_seqs 43 out of 45
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 17:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q12_A DIP13 alpha, DCC-intera 99.7 1.3E-15 4.3E-20 145.3 15.8 148 13-167 78-234 (265)
2 2q13_A DCC-interacting protein 99.6 1.9E-14 6.5E-19 143.6 15.8 149 13-166 78-233 (385)
3 4h8s_A DCC-interacting protein 99.5 3.6E-13 1.2E-17 135.3 15.4 149 13-164 101-254 (407)
4 2z0v_A SH3-containing GRB2-lik 99.2 9.5E-11 3.3E-15 111.8 14.6 136 13-161 90-226 (240)
5 1zww_A SH3-containing GRB2-lik 99.2 5.4E-10 1.9E-14 107.3 15.1 137 13-162 106-243 (256)
6 1uru_A Amphiphysin; endocytosi 98.5 1.8E-06 6.3E-11 80.1 15.0 139 27-167 98-241 (244)
7 2fic_A Bridging integrator 1; 98.4 2.4E-06 8.1E-11 80.6 13.0 132 31-163 117-250 (251)
8 4avm_A Bridging integrator 2; 97.6 0.00085 2.9E-08 64.4 14.4 141 24-166 91-234 (237)
9 4a3a_A Amphiphysin; structural 96.8 0.025 8.5E-07 54.7 14.4 131 33-165 105-238 (243)
10 2ykt_A Brain-specific angiogen 96.2 0.11 3.6E-06 51.2 15.1 148 13-164 71-234 (253)
11 2d1l_A Metastasis suppressor p 94.8 0.65 2.2E-05 46.0 14.9 59 14-72 75-134 (253)
12 1i4d_A Arfaptin 2, partner of 94.3 0.24 8E-06 48.5 10.4 139 2-154 48-201 (224)
13 3dyt_A Sorting nexin-9; 3-heli 93.8 0.3 1E-05 49.3 10.4 136 13-158 227-362 (366)
14 4akv_A Sorting nexin-33; trans 93.4 0.73 2.5E-05 47.2 12.6 132 13-158 247-382 (386)
15 3plt_A Sphingolipid long chain 92.7 0.79 2.7E-05 45.3 11.0 106 10-123 57-163 (234)
16 3ok8_A Brain-specific angiogen 88.0 2.4 8.2E-05 41.6 9.7 78 15-93 71-153 (222)
17 2efl_A Formin-binding protein 83.5 7.5 0.00026 36.6 10.4 43 16-58 73-115 (305)
18 3abh_A Pacsin2, protein kinase 81.5 13 0.00045 35.7 11.5 41 16-56 85-125 (312)
19 2v0o_A FCHO2, FCH domain only 81.3 28 0.00095 32.4 13.4 19 128-146 216-234 (276)
20 3aco_A Pacsin2, protein kinase 76.1 34 0.0012 33.6 12.8 40 17-56 86-125 (350)
21 3i2w_A Syndapin, LD46328P; EFC 66.8 89 0.003 29.6 13.3 42 16-57 64-105 (290)
22 2x3v_A Syndapin I, protein kin 65.3 96 0.0033 30.0 13.1 40 18-57 78-117 (337)
23 3haj_A Human pacsin2 F-BAR; pa 62.2 1.3E+02 0.0046 31.1 14.3 42 16-57 78-119 (486)
24 4dyl_A Tyrosine-protein kinase 57.5 33 0.0011 35.0 8.6 42 17-58 70-111 (406)
25 2efk_A CDC42-interacting prote 54.8 1.4E+02 0.0048 28.0 15.0 42 16-57 66-107 (301)
26 4hpq_C ATG17, KLTH0D15642P; au 50.1 31 0.0011 36.4 7.2 45 49-96 313-359 (413)
27 3g9g_A Suppressor of yeast pro 42.5 2.7E+02 0.0093 27.8 12.5 114 15-142 118-237 (287)
28 2p22_A Suppressor protein STP2 39.2 1.5E+02 0.0051 28.1 9.3 57 22-78 12-79 (174)
29 3oja_B Anopheles plasmodium-re 38.5 1.1E+02 0.0037 31.6 9.0 17 59-75 478-494 (597)
30 4ido_A Atlastin-1; GTPase, GTP 35.1 2.8E+02 0.0095 29.5 11.6 78 30-115 324-402 (457)
31 2pjw_H Uncharacterized protein 33.1 1.4E+02 0.0048 25.5 7.3 51 13-78 33-83 (88)
32 2yf2_A C4B binding protein; im 31.3 57 0.002 26.4 4.3 29 16-44 35-63 (65)
33 3m3w_A Pacsin3, protein kinase 30.7 3.9E+02 0.013 26.1 15.6 40 16-55 76-115 (320)
34 4ew8_A Sensor protein DIVL; si 30.2 1.9E+02 0.0067 25.7 8.2 91 21-112 26-131 (268)
35 1hci_A Alpha-actinin 2; triple 26.5 4.9E+02 0.017 25.9 14.1 69 101-169 244-322 (476)
36 1jad_A PLC-beta, phospholipase 25.9 5.1E+02 0.017 25.9 11.7 38 104-146 91-129 (251)
37 2a01_A Apolipoprotein A-I; fou 25.5 1.1E+02 0.0039 29.2 6.2 73 16-88 56-129 (243)
38 3zrx_A AF1503 protein, osmolar 25.1 1.5E+02 0.0051 22.3 5.7 42 13-54 35-79 (115)
39 2fic_A Bridging integrator 1; 24.0 2.4E+02 0.0081 26.2 7.9 44 34-78 124-171 (251)
40 2gno_A DNA polymerase III, gam 23.9 4.5E+02 0.015 25.5 10.2 110 14-131 163-285 (305)
41 3caz_A BAR protein; thermo-aci 21.9 5.9E+02 0.02 25.2 12.5 112 17-154 86-207 (294)
42 1zs3_A Lactococcus lactis Mg13 21.2 3.1E+02 0.011 25.4 8.1 38 118-155 99-139 (182)
No 1
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=99.66 E-value=1.3e-15 Score=145.32 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=124.2
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+|+.++.+|..||++..||......+..++.++|..|++.+++ ||+.++|.||.||+.|++|+..++.+..-.|+| +
T Consensus 78 ~d~~~~~~L~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k--~ 155 (265)
T 2q12_A 78 DDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--E 155 (265)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c
Confidence 7888999999999999999999999999999999999999999 999999999999999999998886544444433 2
Q ss_pred CCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhh-hhhhHHHHHHh
Q 008054 92 GESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVA 163 (579)
Q Consensus 92 ~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL-E~lephVk~~a 163 (579)
.| . +++++..++++.+ ++|.|-++ .|+.++..++|..+..|.+||.+||+.|...+ +.++|+++.|.
T Consensus 156 ~e----~-~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~ 230 (265)
T 2q12_A 156 ND----K-VKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG 230 (265)
T ss_dssp CH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ch----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1 3445555555555 56777776 89999999999999999999999999999998 49999999988
Q ss_pred hhhc
Q 008054 164 ERQH 167 (579)
Q Consensus 164 e~~h 167 (579)
...+
T Consensus 231 ~~l~ 234 (265)
T 2q12_A 231 TSVQ 234 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 2
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.58 E-value=1.9e-14 Score=143.59 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=122.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+|+.++.+|..||++..||..+.+.+..++.++|..|++.+++ ||+.++|.||.||+.|++|+..++.+.--.|+| +
T Consensus 78 ~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k--~ 155 (385)
T 2q13_A 78 DDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--E 155 (385)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSS--C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c
Confidence 7888999999999999999999999999999999999999999 999999999999999999999886654443333 2
Q ss_pred CCcchhH---HHHHHHHHHHHHHHHHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhh-hhhhHHHHHHhhh
Q 008054 92 GESVSLQ---QQLQAANDEYEEEARLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVAER 165 (579)
Q Consensus 92 ~e~~i~~---~ql~~a~eE~eeEa~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL-E~lephVk~~ae~ 165 (579)
.+. +++ .+|.+++.+|+. ++|.|.++ .|..++...+|..+..+.+||++||++|...+ +.++|+++.|...
T Consensus 156 ~e~-~~~ea~~~l~~~rk~f~~--~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~~~ 232 (385)
T 2q13_A 156 NDK-VKYEVTEDVYTSRKKQHQ--TMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTS 232 (385)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hhh-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 144455555553 66777766 99999999999999999999999999999997 6999999877755
Q ss_pred h
Q 008054 166 Q 166 (579)
Q Consensus 166 ~ 166 (579)
.
T Consensus 233 l 233 (385)
T 2q13_A 233 V 233 (385)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.48 E-value=3.6e-13 Score=135.34 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=121.4
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+|+++..+|..|+++..|+....+.+.+++.++|..|++++++ +|+.++|+||+||+.++.|+.+++.+..-.|+|
T Consensus 101 ~d~~~~~~l~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k--- 177 (407)
T 4h8s_A 101 GDEEVISTLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKK--- 177 (407)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTT---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---
Confidence 6788999999999999999999999999999999999999999 999999999999999999999996554322222
Q ss_pred CCcchh---HHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh-hhhhHHHHHHhh
Q 008054 92 GESVSL---QQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVAE 164 (579)
Q Consensus 92 ~e~~i~---~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL-E~lephVk~~ae 164 (579)
.....+ .++|.+++..|+.-+--+++.|..|+.++..++|..+.++++||.+||+.|...+ +.++++++.+..
T Consensus 178 ~~~~~~~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~~~l~~ 254 (407)
T 4h8s_A 178 ENEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVAD 254 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 1255566666766554555566699999999999999999999999999999987 568888876643
No 4
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=99.24 E-value=9.5e-11 Score=111.76 Aligned_cols=136 Identities=18% Similarity=0.318 Sum_probs=121.3
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+|...|.+|.++|.++.+|-.....|...|..++..|+..+|+ |++.+.+-+|.++++|-+|++++ .+ ..|
T Consensus 90 ~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak-~k-------~~k 161 (240)
T 2z0v_A 90 EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKK-KR-------VGK 161 (240)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TT-------TTS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------hcc
Confidence 6888999999999999999999999999999999999999996 99999999999999999999985 11 122
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHH
Q 008054 92 GESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL 161 (579)
Q Consensus 92 ~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~ 161 (579)
...+ +|.++.++|++-+..+.-++..|.... .+.|.++..+-.||+.||++|+..|+.|.|.+..
T Consensus 162 ---~~ee-El~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~ 226 (240)
T 2z0v_A 162 ---IPDE-EVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQSTEILQELQSKLQM 226 (240)
T ss_dssp ---SCHH-HHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccHH-HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355 999999999998888887888887765 7888899999999999999999999999999864
No 5
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=99.15 E-value=5.4e-10 Score=107.30 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=119.6
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+|...|.+|.++|.++.+|......+...|..++..|+..+|+ +++.+.+.+|..+.+|-+|+++.+ +..|
T Consensus 106 ~~s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~-k~~k------- 177 (256)
T 1zww_A 106 DDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKK-RQGK------- 177 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-TTTT-------
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-------
Confidence 5678899999999999999999999999999999999999998 999999999999999999999862 2211
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHH
Q 008054 92 GESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLV 162 (579)
Q Consensus 92 ~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ 162 (579)
...+ +|..+.++|++=...+.-.|..|-... .+.+.++..+..||++||++|+..|+.|.|.+...
T Consensus 178 ---~~ee-Ele~A~~~fe~~~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~ 243 (256)
T 1zww_A 178 ---IPDE-ELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEER 243 (256)
T ss_dssp ---SCHH-HHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccHH-HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1355 999999999998877777777666554 56779999999999999999999999999998754
No 6
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=98.53 E-value=1.8e-06 Score=80.11 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC--CCCCcc---hhHHHH
Q 008054 27 VQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS--GKGESV---SLQQQL 101 (579)
Q Consensus 27 ~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~--~K~e~~---i~~~ql 101 (579)
+...+..+++.|..+|...+..|+..|++.++++..+-+..+.||-||+... .+.+|-+.|. .|.+.- ..+ ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~-~~l~kl~~k~~k~kd~~kl~~ae~-el 175 (244)
T 1uru_A 98 QTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQR-HSFQNLQANANKRKDDVKLTKGRE-QL 175 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTTCBTTBCCTTTTCHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhccccCccHHHHHHHHH-HH
Confidence 3334667788888999999999999999999999988888999999999986 5555544332 244443 344 88
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhhc
Q 008054 102 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQH 167 (579)
Q Consensus 102 ~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~h 167 (579)
+++.++|+.-...+.=-|-.|-+.+...+...+..+..+|+.||+.+.+..+.|.+.++.+.+++.
T Consensus 176 ~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~~~ 241 (244)
T 1uru_A 176 EEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQ 241 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 899999997665555445556666666777788888999999999999999999999999987753
No 7
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=98.42 E-value=2.4e-06 Score=80.60 Aligned_cols=132 Identities=13% Similarity=0.055 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchh--HHHHHHHHHHH
Q 008054 31 LQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSL--QQQLQAANDEY 108 (579)
Q Consensus 31 L~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~--~~ql~~a~eE~ 108 (579)
+..++..|...|...+..|+..+++.++.+..+-+..+.||-||+... .+.+|-+.+..|.+.-+. +++++++.++|
T Consensus 117 ~~~~~~d~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~-~~l~kl~~k~~kd~~kl~kae~el~~ak~~y 195 (251)
T 2fic_A 117 NDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSAR-HHYESLQTAKKKDEAKIAKAEEELIKAQKVF 195 (251)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH
Confidence 345666777778888999999999999999999999999999999876 445555544444444332 23788899999
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHHHHHHh
Q 008054 109 EEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA 163 (579)
Q Consensus 109 eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~lephVk~~a 163 (579)
+.--..+.=.|-.|.+.+..-+...+.-+..+|++||+++.+.++.|.+.+..|+
T Consensus 196 e~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 196 EEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8655555555555656666666678888899999999999999999999887765
No 8
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=97.64 E-value=0.00085 Score=64.35 Aligned_cols=141 Identities=11% Similarity=0.101 Sum_probs=100.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchh--HHHH
Q 008054 24 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSL--QQQL 101 (579)
Q Consensus 24 lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~--~~ql 101 (579)
+..+...+..|+..|...|...|..|+..+++-+..+..+-+..+.|.-||+... .+.+|-+.|..|.+.-+. +.++
T Consensus 91 ~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~-~~~~kl~~k~~kd~~kl~kae~el 169 (237)
T 4avm_A 91 LKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSAR-HHLEAVQNAKKKDEAKTAKAEEEF 169 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcHHHHHHHHHHH
Confidence 3344445667788899999888999999999999999988888999999999987 666666656567665442 1256
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccchhHHHH-HHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhhh
Q 008054 102 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQ-AARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQ 166 (579)
Q Consensus 102 ~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtq-aaRhhaAQl~fFrkGLKsLE~lephVk~~ae~~ 166 (579)
+.+.++|+.--..+.=-|-.|-+.+ ..+|.. +.-+...|.+||..--|....|...+..|.+++
T Consensus 170 ~~a~~~ye~lN~~L~~eLP~l~~~~-~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~~~ 234 (237)
T 4avm_A 170 NKAQTVFEDLNQELLEELPILYNSR-IGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLERQH 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 6666677655544333333332222 344444 444556799999999999999999999998753
No 9
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=96.78 E-value=0.025 Score=54.72 Aligned_cols=131 Identities=12% Similarity=0.071 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchh--HHHHHHHHHHHHH
Q 008054 33 KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSL--QQQLQAANDEYEE 110 (579)
Q Consensus 33 kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~--~~ql~~a~eE~ee 110 (579)
.++..|.+.+...+..|+..|++-+.++..+=+--+.|.-||+..+ .+.||=+.|..|.+.-+. +.+++.|.++|+.
T Consensus 105 ~l~~d~~~~l~d~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~-~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~ 183 (243)
T 4a3a_A 105 VLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSAR-HHLEALQSSKRKDESRISKAEEEFQKAQKVFEE 183 (243)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHH-HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777778999999999999977777788889999887 566665555557765442 2367777777776
Q ss_pred HHHHHHHHhhhhccccchhHHHH-HHHHHHHHHhhHHHhhhhhhhhhHHHHHHhhh
Q 008054 111 EARLCVFRLKSLKQGQYRSLLTQ-AARHHAAQLNFFRKGFKSLEAVDTHVRLVAER 165 (579)
Q Consensus 111 Ea~lc~frLKsLKqgq~rsLLtq-aaRhhaAQl~fFrkGLKsLE~lephVk~~ae~ 165 (579)
--..+.=-|=.|-+-+ ..+|.. +.-+..+|.+||....|....|...+..++++
T Consensus 184 lN~~L~eELP~l~~~r-~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~~~~ 238 (243)
T 4a3a_A 184 FNVDLQEELPSLWSRR-VGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQ 238 (243)
T ss_dssp HHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 5533322222222222 233333 34455689999999999999999999988864
No 10
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=96.21 E-value=0.11 Score=51.19 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=81.6
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHH----HHHHHHHHHHHH--HHHhhc
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQC----DEKRNVCEYVMA--QQREKG 85 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqc----Dekr~~YE~m~a--~~~EKg 85 (579)
.-.|+|.+|..+..++++|+.-++.+.+.+..-+..|++.=+. +-|.|..+.|.| -.+++.|+-..+ .+.+ .
T Consensus 71 gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~-K 149 (253)
T 2ykt_A 71 GSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLR-K 149 (253)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH-h
Confidence 3479999999999999999999999999999999999998777 777777665544 445556654431 1222 2
Q ss_pred cccCCCCCcchh---HHHHHHH------HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhh
Q 008054 86 KSKSGKGESVSL---QQQLQAA------NDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD 156 (579)
Q Consensus 86 rsk~~K~e~~i~---~~ql~~a------~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~le 156 (579)
|++.||+.+--. .+.++++ .|+|+.++ +...++ -.-+++..|+....-.....++|+.+|...|...-
T Consensus 150 K~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~~~~-lr~aL~--EERrRycflv~~~~~v~~~~~~~h~~~~~~L~~~l 226 (253)
T 2ykt_A 150 KSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDG-YKTALT--EERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKL 226 (253)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455543211 1122211 11111111 011111 11234444555555555555567766666666555
Q ss_pred HHHHHHhh
Q 008054 157 THVRLVAE 164 (579)
Q Consensus 157 phVk~~ae 164 (579)
|-...++.
T Consensus 227 ~~w~~l~~ 234 (253)
T 2ykt_A 227 PLWQQACA 234 (253)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 55555543
No 11
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=94.82 E-value=0.65 Score=46.04 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHH
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRN 72 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~ 72 (579)
-.|+|.+|..+..++++|..-++.....+.+-+..|+|.=+. +-|.+-.|-|-|.+-++
T Consensus 75 s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~pLe~k~e~d~k~~~~~~K~~~~~~k 134 (253)
T 2d1l_A 75 TREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYK 134 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999998888 77877766554444433
No 12
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=94.30 E-value=0.24 Score=48.48 Aligned_cols=139 Identities=24% Similarity=0.242 Sum_probs=87.6
Q ss_pred CccccccccCCCchHHHHHHHHHHhHHHHHH-------HHHHHHHHhhhhhccCCcHHHHHHhhhHHH---HHHHHHHHH
Q 008054 2 GSCLMEKTSLDDDEESRKVLLMLGEVQFELQ-------KLVDNYRSNIFLTITNPSESLLNELRTVED---MKRQCDEKR 71 (579)
Q Consensus 2 GsCLlEk~alndd~e~g~vll~lgk~q~EL~-------kL~d~yr~nI~~tIt~PsESLLkeLk~vee---mKkqcDekr 71 (579)
|-|| ..+|.. +.+.|..|..+|+.|+=+. +-++-+.+.|+-- ++ |+++| .=++|+..|
T Consensus 48 G~~f-~~l~~~-~p~l~~~f~~~~~~~r~~~k~g~~Ll~~L~~f~s~l~T~--------~~--kaI~DT~lTIk~ye~aR 115 (224)
T 1i4d_A 48 GDAF-ADLSQK-SPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTL--------VT--KTMEDTLMTVKQYEAAR 115 (224)
T ss_dssp HHHH-HHHHHT-CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH--THHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhh-CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------Hh--HhccHHHHHHHHHHHHh
Confidence 4444 233444 4778888888888877433 3333333332211 11 23343 346777888
Q ss_pred HHHHHHHHHHHhhcc-----ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHH
Q 008054 72 NVCEYVMAQQREKGK-----SKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFR 146 (579)
Q Consensus 72 ~~YE~m~a~~~EKgr-----sk~~K~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFr 146 (579)
-.|..-+....|-.- .-..|-+. +.. +++++++-|++-+.=+.--|+=|-+.+-..+=.|+..+|.|=..||.
T Consensus 116 ~EY~ay~~~~ee~~~~~~~~~~l~rve~-~q~-~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~ 193 (224)
T 1i4d_A 116 LEYDAYRTDLEELSLGPRDAGTRGRLES-AQA-TFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFA 193 (224)
T ss_dssp HHHHHHHHHHHHHC------------CH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhHHHhhcccccccchhhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777776632222211 11123333 444 78899999999997777777888899999999999999999999999
Q ss_pred Hhhhhhhh
Q 008054 147 KGFKSLEA 154 (579)
Q Consensus 147 kGLKsLE~ 154 (579)
+.-+.||.
T Consensus 194 ~~~~~l~~ 201 (224)
T 1i4d_A 194 GNQKQLEQ 201 (224)
T ss_dssp HHHHHHCC
T ss_pred HhHHHHHH
Confidence 87777654
No 13
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=93.81 E-value=0.3 Score=49.29 Aligned_cols=136 Identities=10% Similarity=0.010 Sum_probs=82.4
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
+....+++|-.+|.+...+.++++.-..+-..++.-++..-+..|..++|+=..-......|+..- .-.+++ |.
T Consensus 227 ~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~-kl~~~~-----K~ 300 (366)
T 3dyt_A 227 GETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESD-KLVATS-----KI 300 (366)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHH-HHHHTT-----SS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-----Cc
Confidence 456788999999999888888888776666666555555555566666655222222222222211 111222 32
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 93 ESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
+ .. +++++.++|+.=....-=-|.-.++.+..||=..++.|=..|..|+++.+..+|.+-+.
T Consensus 301 ~---~~-~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~ 362 (366)
T 3dyt_A 301 T---LQ-DKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSR 362 (366)
T ss_dssp C---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 13 66666666654332222222245566677888888888888999999999888887654
No 14
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=93.42 E-value=0.73 Score=47.16 Aligned_cols=132 Identities=11% Similarity=0.078 Sum_probs=83.1
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG 92 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~ 92 (579)
+....+++|-.+|.+...+.+++..-..+-..++.-++.-.+..|..++|+=..-..+...|+..- .-.++ +|.
T Consensus 247 ~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~-kl~~~-----~K~ 320 (386)
T 4akv_A 247 CSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQ-RMSDE-----GRM 320 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHT-----TSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-----CCc
Confidence 567899999999999999988888877777777666666666666666665322222222233221 11122 333
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh----hhccccchhHHHHHHHHHHHHHhhHHHhhhhhhhhhHH
Q 008054 93 ESVSLQQQLQAANDEYEEEARLCVFRLK----SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158 (579)
Q Consensus 93 e~~i~~~ql~~a~eE~eeEa~lc~frLK----sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsLE~leph 158 (579)
+ +++++++..+|+ -..+.++ -.+..+..++-..++.|=..|+.|+++-+..+|.+-+.
T Consensus 321 ~----~~~~~e~~~r~e----~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~ 382 (386)
T 4akv_A 321 V----QDEADGIRRRCR----VVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRM 382 (386)
T ss_dssp C----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred c----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 225555444444 3344444 44566677777788888888999999988888887654
No 15
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.79 Score=45.31 Aligned_cols=106 Identities=22% Similarity=0.272 Sum_probs=72.9
Q ss_pred cCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008054 10 SLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS 89 (579)
Q Consensus 10 alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~ 89 (579)
|.++|++++.|.-+||+.-+|+-.+.+.|..|.-.. -.-||.+|..|+==++.-..|+-....| +++++....+
T Consensus 57 G~~edddl~DIsdklgvLl~e~ge~e~~~a~~~d~y-----R~~LK~IR~~E~svqp~R~~R~~l~~~I-~kLk~k~P~s 130 (234)
T 3plt_A 57 GADNDDDVSDVTDKLGVLIYELGELQDQFIDKYDQY-----RVTLKSIRNIEASVQPSRDRKEKITDEI-AHLKYKDPQS 130 (234)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCTTC
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhccCCCC
Confidence 556788999999999999999999999999988663 5678888888844444444444445555 3444444444
Q ss_pred CCCCcchhHHHHH-HHHHHHHHHHHHHHHHhhhhc
Q 008054 90 GKGESVSLQQQLQ-AANDEYEEEARLCVFRLKSLK 123 (579)
Q Consensus 90 ~K~e~~i~~~ql~-~a~eE~eeEa~lc~frLKsLK 123 (579)
.|-. ..+|||. .-++.+-+||||-.|.=..||
T Consensus 131 ~kl~--~LeqELvraEae~lvaEAqL~n~kR~~lK 163 (234)
T 3plt_A 131 TKIP--VLEQELVRAEAESLVAEAQLSNITREKLK 163 (234)
T ss_dssp THHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHH--HHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Confidence 4432 3344666 556778899998776443443
No 16
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=88.02 E-value=2.4 Score=41.56 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHH----HHHHHHHHHHhhccccC
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRN----VCEYVMAQQREKGKSKS 89 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~----~YE~m~a~~~EKgrsk~ 89 (579)
.|+|.||+.++.++++|+.=++...+-...-+-.|+|-=++ |-+.+.+.-|.|...++ .||-.. ..+-|.++|+
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~-~elkK~~rks 149 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCM-SELWRMERKR 149 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHhhhhh
Confidence 68999999999999999988887766666677788888777 88888855555555443 455543 4555666665
Q ss_pred CCCC
Q 008054 90 GKGE 93 (579)
Q Consensus 90 ~K~e 93 (579)
.|+.
T Consensus 150 qk~~ 153 (222)
T 3ok8_A 150 DKNA 153 (222)
T ss_dssp CTTH
T ss_pred ccCh
Confidence 5543
No 17
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=83.47 E-value=7.5 Score=36.63 Aligned_cols=43 Identities=14% Similarity=0.038 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhh
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELR 58 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk 58 (579)
-+..+|..|-.....+......+..+|.+.|.-|+..+.++++
T Consensus 73 t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~ 115 (305)
T 2efl_A 73 TSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELK 115 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666665556666677777777777888888877776554
No 18
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=81.49 E-value=13 Score=35.71 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHH
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNE 56 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLke 56 (579)
-+..+|..|-.-...+......+..+|.+.|.-|+..+.+|
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~ 125 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666677777777777777766554
No 19
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=81.35 E-value=28 Score=32.41 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHhhHH
Q 008054 128 RSLLTQAARHHAAQLNFFR 146 (579)
Q Consensus 128 rsLLtqaaRhhaAQl~fFr 146 (579)
++.|...+.+....+--+.
T Consensus 216 k~~l~~~~~~~~~~~~~~~ 234 (276)
T 2v0o_A 216 KEIIGSLSNAIKEIHLQIG 234 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHH
Confidence 4455555555554444433
No 20
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=76.06 E-value=34 Score=33.64 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHH
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNE 56 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLke 56 (579)
+..+|..|-.-...+......+..+|.+.|.-|+..+.+|
T Consensus 86 l~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e 125 (350)
T 3aco_A 86 VEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554444445555556666777777776777665443
No 21
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=66.75 E-value=89 Score=29.61 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHh
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNEL 57 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL 57 (579)
-+..+|..+-.....+......+..+|.+.|.-|+..+.+|+
T Consensus 64 s~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~ 105 (290)
T 3i2w_A 64 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKEN 105 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556667777777888888888888888766
No 22
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=65.33 E-value=96 Score=30.04 Aligned_cols=40 Identities=3% Similarity=-0.001 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHh
Q 008054 18 RKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNEL 57 (579)
Q Consensus 18 g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL 57 (579)
..+|..|-.-...+......+..+|.+.|.-|+..+.+|+
T Consensus 78 ~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~ 117 (337)
T 2x3v_A 78 ERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDA 117 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666667777776777777766553
No 23
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=62.17 E-value=1.3e+02 Score=31.13 Aligned_cols=42 Identities=7% Similarity=0.000 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHh
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNEL 57 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL 57 (579)
-+..+|..|-.....+......+..+|.+.|.-|+..+.+|.
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~ 119 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEA 119 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445566666666666666777777778777777777776664
No 24
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=57.45 E-value=33 Score=35.02 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=29.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhh
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELR 58 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk 58 (579)
+..+|..|-.-...+.+....+..+|.+.|.-++..+.+|++
T Consensus 70 l~~aW~~ll~ete~~a~~H~~lae~L~~~v~~~l~~~~ke~~ 111 (406)
T 4dyl_A 70 ISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQ 111 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777777777777777777777777653
No 25
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=54.77 E-value=1.4e+02 Score=28.01 Aligned_cols=42 Identities=5% Similarity=0.036 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHh
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNEL 57 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeL 57 (579)
-+..+|..|-.....+......+..+|.+.|.-|+..+.++.
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~ 107 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEM 107 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666677777777777777777776653
No 26
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=50.12 E-value=31 Score=36.40 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=33.0
Q ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC--CCCCcch
Q 008054 49 PSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS--GKGESVS 96 (579)
Q Consensus 49 PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~--~K~e~~i 96 (579)
--+.+...++++++|+.-|+.=-..|...+ .|=.|||. .|.++++
T Consensus 313 fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL---~Ev~RRr~~~~~~~~i~ 359 (413)
T 4hpq_C 313 FKASCLEDIRQTRNLLDFYANFERSYHNLL---KEVKRRKETAAKLSQIL 359 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 445677788889999999999999999988 45555544 4555544
No 27
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=42.54 E-value=2.7e+02 Score=27.81 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054 15 EESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN---ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK 91 (579)
Q Consensus 15 ~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk---eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K 91 (579)
+....++..|-.-...+..+...+..+|.+-|.-|+-.... +++..+.+.+ ..+.+ +.++|+-++|
T Consensus 118 G~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~~~~~~e~~~l~~-------~L~~~-ak~le~~~kk--- 186 (287)
T 3g9g_A 118 GELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHS-------KLSKN-AASIEHYSKN--- 186 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSSCHHHHHHHHHHH-------HHHHH-HHHHHHCSSC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH-------HHHHH-HHHHHHHHhh---
Confidence 33556666665555555555666666666554444433331 1222111211 23333 5777776654
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhhccc---cchhHHHHHHHHHHHHH
Q 008054 92 GESVSLQQQLQAANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQL 142 (579)
Q Consensus 92 ~e~~i~~~ql~~a~eE~eeEa~lc~frLKsLKqg---q~rsLLtqaaRhhaAQl 142 (579)
.+. .. .|+++..+.+.++-.|--.|..|+.. .-+++|++.+-|...+|
T Consensus 187 ~~a--~~-~le~a~~qWes~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~ 237 (287)
T 3g9g_A 187 NEN--SS-HLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYL 237 (287)
T ss_dssp CSC--TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232 33 67888888888884444444433333 33456666665555544
No 28
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=39.24 E-value=1.5e+02 Score=28.08 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhccCCcHHH----------HH-HhhhHHHHHHHHHHHHHHHHHHH
Q 008054 22 LMLGEVQFELQKLVDNYRSNIFLTITNPSESL----------LN-ELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 22 l~lgk~q~EL~kL~d~yr~nI~~tIt~PsESL----------Lk-eLk~veemKkqcDekr~~YE~m~ 78 (579)
-||.+.|..|.+|-+..+..+.+.|..=.-+| |+ +.+.+++|+...++-+..++.-+
T Consensus 12 ~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i 79 (174)
T 2p22_A 12 EMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQI 79 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999998888877776665444333 22 55566677777777776666654
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.51 E-value=1.1e+02 Score=31.59 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008054 59 TVEDMKRQCDEKRNVCE 75 (579)
Q Consensus 59 ~veemKkqcDekr~~YE 75 (579)
.+..|++..|++|+.|+
T Consensus 478 ~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 478 LLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhhcC
Confidence 34456666666666666
No 30
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=35.09 E-value=2.8e+02 Score=29.54 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchhHHHHHHHHHHHH
Q 008054 30 ELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYE 109 (579)
Q Consensus 30 EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K~e~~i~~~ql~~a~eE~e 109 (579)
.|..|++.|...|+.--.-=.++++.-+-..+ =..-.+++.+.|+..+.++. .++--.+..+ +|.+.+++.+
T Consensus 324 ~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~e-n~~Av~~A~~~Y~~~M~~~~------~~~~P~~~~~-eL~~~H~~~~ 395 (457)
T 4ido_A 324 GLVEYFKAYIKIYQGEELPHPKSMLQATAEAN-NLAAVATAKDTYNKKMEEIC------GGDKPFLAPN-DLQTKHLQLK 395 (457)
T ss_dssp HHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH------STTSCCCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh------CCCCCCCCHH-HHHHHHHHHH
Confidence 45566778887777554333566665443333 33557788889988873221 1112223445 9999999999
Q ss_pred HHH-HHH
Q 008054 110 EEA-RLC 115 (579)
Q Consensus 110 eEa-~lc 115 (579)
+|| ++|
T Consensus 396 ~~Al~~F 402 (457)
T 4ido_A 396 EESVKLF 402 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 988 444
No 31
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=33.06 E-value=1.4e+02 Score=25.49 Aligned_cols=51 Identities=6% Similarity=0.137 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkqcDekr~~YE~m~ 78 (579)
||+++...|-...-..=-|.+|++.|.+--- +..+|-.+|-.+++.|+.|+
T Consensus 33 ~d~eiq~LY~~v~~lRPkL~~li~kysqKk~---------------eL~~Ln~kl~~a~~~Yd~ll 83 (88)
T 2pjw_H 33 QDPHIGDMYGSVTPLRPQVTRMLGKYAKEKE---------------DMLSLRQVLANAERSYNQLM 83 (88)
T ss_dssp SCHHHHHHHHHHTTHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 7899999998888888899999999987532 34589999999999999997
No 32
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=31.32 E-value=57 Score=26.42 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFL 44 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~ 44 (579)
|+-+.||..-|...||+-|-+.+..||.+
T Consensus 35 Ei~KL~LEIQKL~~EL~glskeflehilh 63 (65)
T 2yf2_A 35 EIRKLFLEIQKLKVELQGLSKEFLEHILH 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcchhHHHHHHHhc
Confidence 56788888888888999998888888875
No 33
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=30.68 E-value=3.9e+02 Score=26.10 Aligned_cols=40 Identities=10% Similarity=-0.037 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN 55 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk 55 (579)
-+..+|..|-.-...+......+..+|.+.|.-|+..+.+
T Consensus 76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k 115 (320)
T 3m3w_A 76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQR 115 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666667777778888878777776554
No 34
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=30.23 E-value=1.9e+02 Score=25.68 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=45.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHH-HHHhhc
Q 008054 21 LLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELR--------------TVEDMKRQCDEKRNVCEYVMA-QQREKG 85 (579)
Q Consensus 21 ll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk--------------~veemKkqcDekr~~YE~m~a-~~~EKg 85 (579)
+-..-.-..|..+..+.+...|.+-|.+|+-.+..-++ .++.+.+.++.-....+.++. .+.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33334444455556667777788888888877644222 223444455554444444432 223333
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHH
Q 008054 86 KSKSGKGESVSLQQQLQAANDEYEEEA 112 (579)
Q Consensus 86 rsk~~K~e~~i~~~ql~~a~eE~eeEa 112 (579)
........--+.. -+.++.+.+...+
T Consensus 106 ~~~~~~~~~~l~~-~l~~~~~~~~~~~ 131 (268)
T 4ew8_A 106 EMALEIEDIRVSD-LLLNAQERALKDA 131 (268)
T ss_dssp CCCCCCEEEEHHH-HHHHHHHHHHHHH
T ss_pred CcceeeeeccHHH-HHHHHHHHHHhhh
Confidence 3332222222333 4556666665544
No 35
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=26.47 E-value=4.9e+02 Score=25.85 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH-------HHHHHhhhhccccchhHHHHHHHHHHH---HHhhHHHhhhhhhhhhHHHHHHhhhhccc
Q 008054 101 LQAANDEYEEEAR-------LCVFRLKSLKQGQYRSLLTQAARHHAA---QLNFFRKGFKSLEAVDTHVRLVAERQHID 169 (579)
Q Consensus 101 l~~a~eE~eeEa~-------lc~frLKsLKqgq~rsLLtqaaRhhaA---Ql~fFrkGLKsLE~lephVk~~ae~~hID 169 (579)
+...+.+|..++. -++..|.+..-|+..+-++.+.+.|.+ .+.=|...+..+..+...+..+.+..|++
T Consensus 244 ~e~l~~~f~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 322 (476)
T 1hci_A 244 IDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIR 322 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3344446666652 233445555556655566666666654 22445555555555555566666666653
No 36
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=25.92 E-value=5.1e+02 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHH-HHHHHHhhHH
Q 008054 104 ANDEYEEEARLCVFRLKSLKQGQYRSLLTQAAR-HHAAQLNFFR 146 (579)
Q Consensus 104 a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaR-hhaAQl~fFr 146 (579)
..++|++|..++.--|+++ .++|+.+|+ .|++||.-..
T Consensus 91 ~~~q~~eE~~~k~~Hl~eq-----~~~Lk~l~~e~Q~~QmK~Lk 129 (251)
T 1jad_A 91 GEEYHDGIRRRKEQHATEQ-----TAKITELAREKQIAELKALK 129 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777766654 677777776 5667876653
No 37
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=25.50 E-value=1.1e+02 Score=29.22 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008054 16 ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV-EDMKRQCDEKRNVCEYVMAQQREKGKSK 88 (579)
Q Consensus 16 e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~v-eemKkqcDekr~~YE~m~a~~~EKgrsk 88 (579)
..+.+.-+|+....|+..-+-.|..-+-.-|.--+|.+=+.|.-. ++++....+.-+.|..++.-+.|+-|.+
T Consensus 56 ~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~ 129 (243)
T 2a01_A 56 TFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEG 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666555544433 3777777777777777666666666554
No 38
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=25.12 E-value=1.5e+02 Score=22.33 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=27.5
Q ss_pred CchHHHHHHHHHHhHHHHHHHHHHHH---HHhhhhhccCCcHHHH
Q 008054 13 DDEESRKVLLMLGEVQFELQKLVDNY---RSNIFLTITNPSESLL 54 (579)
Q Consensus 13 dd~e~g~vll~lgk~q~EL~kL~d~y---r~nI~~tIt~PsESLL 54 (579)
..+|+|.+.-.|-.+...|..++... ..++.+-|..|+..+.
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~ 79 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIR 79 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 56788888888888888877776653 3444445555555444
No 39
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=23.96 E-value=2.4e+02 Score=26.19 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhccCCcHHHHHHhhh----HHHHHHHHHHHHHHHHHHH
Q 008054 34 LVDNYRSNIFLTITNPSESLLNELRT----VEDMKRQCDEKRNVCEYVM 78 (579)
Q Consensus 34 L~d~yr~nI~~tIt~PsESLLkeLk~----veemKkqcDekr~~YE~m~ 78 (579)
+.+....+++..|..=+ +.+++++. -+.-+--||..|.-|+.+.
T Consensus 124 ~~~~l~~~vi~Pl~~~~-~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~ 171 (251)
T 2fic_A 124 YHQKLVDQALLTMDTYL-GQFPDIKSRIAKRGRKLVDYDSARHHYESLQ 171 (251)
T ss_dssp HHHHHHHHTHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344445555544444 34443322 2244456777766666553
No 40
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=23.90 E-value=4.5e+02 Score=25.52 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHhHHHHHHHHHHHHH-----HhhhhhccCCcHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008054 14 DEESRKVLLMLGEVQFELQKLVDNYR-----SNIFLTITNPSESLLNELRTVE-DMKRQCDEKRNVCEYVMAQQREKGKS 87 (579)
Q Consensus 14 d~e~g~vll~lgk~q~EL~kL~d~yr-----~nI~~tIt~PsESLLkeLk~ve-emKkqcDekr~~YE~m~a~~~EKgrs 87 (579)
+++.++++.++...-.|+.+|++... ..|...+..+.+...+=..-++ =+++.+++..+.|+.++.. . +|..
T Consensus 163 ~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~a~~~~~~l~~~-~-~g~~ 240 (305)
T 2gno_A 163 ERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQVTNT-I-TGKD 240 (305)
T ss_dssp GTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH-S-CTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-h-cCCC
Confidence 46788888777555566666665543 4555556666665433222333 3566777888888877621 1 2211
Q ss_pred cCCCCCcchhHHHHHHHH-------HHHHHHHHHHHHHhhhhccccchhHH
Q 008054 88 KSGKGESVSLQQQLQAAN-------DEYEEEARLCVFRLKSLKQGQYRSLL 131 (579)
Q Consensus 88 k~~K~e~~i~~~ql~~a~-------eE~eeEa~lc~frLKsLKqgq~rsLL 131 (579)
= ..+|.. ++.... .|+-++-.+|.||+. +|.|..-+.|
T Consensus 241 ~----~~~i~~-~~r~l~~~~~~~~~~~l~~~~~~~~~~~-~k~~g~~~~l 285 (305)
T 2gno_A 241 A----FLLIQR-LTRIILHENTWESVEDQKSVSFLDSILR-VKIANLNNKL 285 (305)
T ss_dssp H----HHHHHH-HHHHHHHTSCCCSHHHHHHHHHHHHHHT-CCGGGCCHHH
T ss_pred H----HHHHHH-HHHHHHhhchhhhHHHHHHHHHHHHHHH-HhcCCCCHHH
Confidence 1 233444 444333 233345567777775 4555555544
No 41
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=21.86 E-value=5.9e+02 Score=25.18 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHH--HHhhccccCCC
Q 008054 17 SRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQ---CDEKRNVCEYVMAQ--QREKGKSKSGK 91 (579)
Q Consensus 17 ~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLkeLk~veemKkq---cDekr~~YE~m~a~--~~EKgrsk~~K 91 (579)
...-||-+-|--+|+.+|+... -|=.|++|++|+| |||-|..|+|--.. -+||.+ |
T Consensus 86 fdvryldihkhgreiarlleki---------------qkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~----K 146 (294)
T 3caz_A 86 FDVRYLDIHKHGREIARLLEKI---------------QKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKN----K 146 (294)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----C
T ss_pred cchhhhhHHhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhcc----c
Confidence 3445667777777877776542 2233455666665 68889998875423 334433 4
Q ss_pred CCcchhHHHHH--HHHHHHHHHHHHHHHHhhhhc--cccchhHHHHHHH-HHHHHHhhHHHhhhhhhh
Q 008054 92 GESVSLQQQLQ--AANDEYEEEARLCVFRLKSLK--QGQYRSLLTQAAR-HHAAQLNFFRKGFKSLEA 154 (579)
Q Consensus 92 ~e~~i~~~ql~--~a~eE~eeEa~lc~frLKsLK--qgq~rsLLtqaaR-hhaAQl~fFrkGLKsLE~ 154 (579)
.-.-|+..|-. .+---|. +.|.-.|--+. -|...+++-.||- -+..|+.|- |+||+
T Consensus 147 dSeKI~RNQsKLssAEtaYk---qvcsDiInkMnkll~n~~riineaasavwstqlqya----kalea 207 (294)
T 3caz_A 147 DQERIERNQQKFKDAEAAYS---SVCADLIQKMETVWKKHVSIFAEAASAVWSTQLQYA----KALEA 207 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred hHHHHHHhHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 33333331322 3322332 67877776332 2444555555543 455677663 45554
No 42
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=21.23 E-value=3.1e+02 Score=25.43 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=30.0
Q ss_pred Hhhhhccc---cchhHHHHHHHHHHHHHhhHHHhhhhhhhh
Q 008054 118 RLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAV 155 (579)
Q Consensus 118 rLKsLKqg---q~rsLLtqaaRhhaAQl~fFrkGLKsLE~l 155 (579)
.||+-..+ ...+.|..++.-|.+...++|++++..+..
T Consensus 99 ~i~e~~~~~~~~~~e~l~~L~~d~~~~~~~~r~~i~~A~e~ 139 (182)
T 1zs3_A 99 FITEDPKAKYWTDEDLLESFIVDFQAQNMFITRAIKLANKE 139 (182)
T ss_dssp SCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46655554 457899999999999999999998877654
Done!