Query 008056
Match_columns 579
No_of_seqs 128 out of 1089
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 18:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0201 SecY Preprotein transl 100.0 8.1E-91 1.7E-95 745.1 40.0 417 142-577 4-434 (436)
2 PRK12907 secY preprotein trans 100.0 5.4E-90 1.2E-94 743.0 42.9 409 153-578 11-434 (434)
3 PRK09204 secY preprotein trans 100.0 1.2E-89 2.6E-94 741.0 41.7 409 150-574 8-426 (426)
4 CHL00161 secY preprotein trans 100.0 1.3E-86 2.7E-91 716.1 40.7 404 149-574 3-416 (417)
5 PRK12417 secY preprotein trans 100.0 1.3E-84 2.8E-89 696.6 39.5 388 149-576 5-404 (404)
6 TIGR00967 3a0501s007 preprotei 100.0 6.3E-84 1.4E-88 694.1 37.3 398 157-570 1-410 (410)
7 PRK08568 preprotein translocas 100.0 4.5E-83 9.7E-88 695.3 41.0 410 134-577 3-460 (462)
8 TIGR02920 acc_sec_Y2 accessory 100.0 4E-79 8.8E-84 653.6 37.7 385 155-574 1-395 (395)
9 PTZ00219 Sec61 alpha subunit; 100.0 5.4E-78 1.2E-82 656.5 35.5 402 132-567 5-469 (474)
10 PF00344 SecY: SecY translocas 100.0 5.5E-71 1.2E-75 582.6 29.5 331 211-559 1-346 (346)
11 KOG1373 Transport protein Sec6 100.0 8.3E-57 1.8E-61 461.9 24.9 406 129-569 1-469 (476)
12 PF10559 Plug_translocon: Plug 89.2 0.15 3.2E-06 37.0 0.5 18 168-185 1-18 (35)
13 PF04923 Ninjurin: Ninjurin ; 52.7 38 0.00082 30.5 5.8 46 219-264 46-92 (104)
14 CHL00161 secY preprotein trans 41.3 4.3E+02 0.0094 29.3 13.1 26 313-339 382-407 (417)
15 PF08006 DUF1700: Protein of u 29.6 1.8E+02 0.0038 28.1 7.0 32 476-508 52-83 (181)
16 PRK10582 cytochrome o ubiquino 29.3 1.8E+02 0.004 26.4 6.4 50 256-305 47-100 (109)
17 PF07330 DUF1467: Protein of u 28.8 66 0.0014 28.0 3.4 39 487-525 32-70 (85)
18 TIGR02847 CyoD cytochrome o ub 28.1 2.2E+02 0.0047 25.3 6.6 50 256-305 36-89 (96)
19 PF10066 DUF2304: Uncharacteri 27.8 3.2E+02 0.0068 24.6 7.8 55 514-571 38-92 (115)
20 PF12263 DUF3611: Protein of u 26.9 5.2E+02 0.011 25.6 9.6 75 453-532 56-133 (183)
21 COG3125 CyoD Heme/copper-type 23.9 2.8E+02 0.0062 25.4 6.6 56 256-311 49-108 (111)
22 TIGR02901 QoxD cytochrome aa3 23.8 2.9E+02 0.0064 24.4 6.6 49 257-305 39-91 (94)
23 TIGR01524 ATPase-IIIB_Mg magne 21.6 3.9E+02 0.0085 32.5 9.2 88 476-574 35-123 (867)
No 1
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.1e-91 Score=745.11 Aligned_cols=417 Identities=29% Similarity=0.448 Sum_probs=346.5
Q ss_pred hhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccccchhhcCchhH
Q 008056 142 SVLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQ 220 (579)
Q Consensus 142 ~~~~~~~~~~-~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLFsLGI~Py 220 (579)
...|++.++. +.++++||++||++++++||+|++||+||+|.++..+.+.+...+.++.+..-||++++|+|+|||+||
T Consensus 4 ~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~Py 83 (436)
T COG0201 4 PLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPY 83 (436)
T ss_pred hhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHH
Confidence 3457778876 469999999999999999999999999999998764433222111111111125679999999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc--ccccccchhHHHHHHHHHHH
Q 008056 221 IVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--IYAASHSVKHVMVTAFLLVC 298 (579)
Q Consensus 221 ItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~--~~~~~~~~~~~l~ivl~Lva 298 (579)
||||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||++++......+ ......+..++++++++|++
T Consensus 84 ITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~ 163 (436)
T COG0201 84 ITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTA 163 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHH
Confidence 9999999999977999999999999999999999999999999999999975432111 11112235568899999999
Q ss_pred HHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCC--cccHHHHHHHHHHHHHHHHHHHhhccceEE
Q 008056 299 GAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 376 (579)
Q Consensus 299 Ga~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~--~~~~~~ll~il~i~llvi~~iV~v~~~~rr 376 (579)
|+|++|||||+|||||+|||+||+|++||++++|+.+.+.......+. .++.. .+..++.+++++++++|+|+++||
T Consensus 164 Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~ii~~vvyve~~~r~ 242 (436)
T COG0201 164 GTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILF-LLLLVLLTLAIIFLVVYVEQARRR 242 (436)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHhhheEEE
Confidence 999999999999999999999999999999999999988665444331 12221 122344455567779999999999
Q ss_pred EEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCCh-------hHHHHHHHcCCCCC
Q 008056 377 VKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILNPETS 449 (579)
Q Consensus 377 IPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~-------~~~~i~~~l~~~~s 449 (579)
|||||+|++ ..+++++|+|+|+||||+||+||||+++++|++++++++++ |...+..++++.
T Consensus 243 IPI~y~~~~---------~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~-- 311 (436)
T COG0201 243 IPIQYAKRQ---------SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPG-- 311 (436)
T ss_pred eehhhhhhh---------hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCC--
Confidence 999999854 13367899999999999999999999999999999998622 334555666644
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHH
Q 008056 450 VGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSST 527 (579)
Q Consensus 450 ~~~~~~iy~iiy~~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~ 527 (579)
.|+|.++|++++++||||| ++.||||+||||||+|.+|||+|||++|+|||+|+++|+|++||+|++++|++|+
T Consensus 312 ----~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~ 387 (436)
T COG0201 312 ----SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPE 387 (436)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 008056 528 ILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 577 (579)
Q Consensus 528 il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~ 577 (579)
+++...+ ..+.+||||+||+||+++|+++|+++++.+++|+++.+..
T Consensus 388 l~~~~~~---~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~~~ 434 (436)
T COG0201 388 LLGTAGG---VPFYFGGTSLLIVVGVALDTYEQIEAELLMEKYPGLRRIK 434 (436)
T ss_pred HHHHhcC---CcccccCeeeeeehHHHHHHHHHHHHHHHHhhchhHHhhc
Confidence 9998642 3478899999999999999999999999999999985543
No 2
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=5.4e-90 Score=742.96 Aligned_cols=409 Identities=23% Similarity=0.399 Sum_probs=328.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHHHHH
Q 008056 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASILMQV 229 (579)
Q Consensus 153 ~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLFsLGI~PyItASII~QL 229 (579)
++|+|+|++||++++++||+|++||+||+|.++++. .+. +.+..+.+ | |+++++|+|+|||+|||||||+|||
T Consensus 11 ~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~--~~~--~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~QL 86 (434)
T PRK12907 11 VAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV--QDQ--ANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQL 86 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh--hhh--hhHHHHHHHHhccccccChHHHHccHHHHHHHHHHHH
Confidence 589999999999999999999999999999875421 111 11112212 2 5678999999999999999999999
Q ss_pred HHh-HhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccc--cccccccchhHHHHHHHHHHHHHHHHHHH
Q 008056 230 LCH-IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPY--SIYAASHSVKHVMVTAFLLVCGAMTMSWI 306 (579)
Q Consensus 230 L~~-~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~--~~~~~~~~~~~~l~ivl~LvaGa~il~WL 306 (579)
|+. .+|++++++||||+||+|+|++|||+|+++|++||++++...... +......+....++++++|++|+|+++||
T Consensus 87 L~~~~~p~l~~l~kege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~WL 166 (434)
T PRK12907 87 LQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWL 166 (434)
T ss_pred HHhccCccHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 965 699999999999999999999999999999999999986432111 00011122334667789999999999999
Q ss_pred HhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHH-hh-hcCC---cccHHHHHHHHHHHHHHHHHHHhhccceEEEEEee
Q 008056 307 CDTISESGFGQGSSLIICVGILTGYTETLYKMLS-QL-LGSS---VRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQY 381 (579)
Q Consensus 307 ~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~-~~-~~~~---~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy 381 (579)
||+|||||+|||+|++|++||++++|+++.+.+. .. ..+. .+.. ....+++++++++++++++++++||||+||
T Consensus 167 ~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~v~v~~~~rrIPi~y 245 (434)
T PRK12907 167 GEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHII-KMLLIGLVILAIVVGVIYIQQAVRKIPIQY 245 (434)
T ss_pred HHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHH-HHHHHHHHHHHHHHHHhheeeeeEEEEEEE
Confidence 9999999999999999999999999988765432 11 1111 0111 112223334455677899999999999999
Q ss_pred ccccccccccCCCCCCC-CCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCCh-hHHHHHHHcCCCCCCCCcchHHHH
Q 008056 382 YGFKLASAAREDSPITE-VEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPWVYYT 459 (579)
Q Consensus 382 ~~~~~~~~~r~~~~~~~-~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~-~~~~i~~~l~~~~s~~~~~~iy~i 459 (579)
+++. ++++ .+++ +++|+|+|+|||||||+|||++++++|+++++++.+. +...+..++++. .++|.+
T Consensus 246 a~r~--~~~~---~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~ 314 (434)
T PRK12907 246 AKAV--SGNN---QYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFA------HPIGMT 314 (434)
T ss_pred chhh--cccc---ccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCC------CcHHHH
Confidence 9642 2221 2334 5689999999999999999999999999999987432 233444555543 256888
Q ss_pred HHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccC
Q 008056 460 IYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRIN 537 (579)
Q Consensus 460 iy~~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~ 537 (579)
+|++++++|+||| ++.||||+||||||+|++|||+||||+|++||+|+++|++++||++++++|++|++++.+++ ++
T Consensus 315 ~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~-~~ 393 (434)
T PRK12907 315 LYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIAT-LP 393 (434)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC-CC
Confidence 9999999999996 77899999999999999999999999999999999999999999999999999999987643 22
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhC
Q 008056 538 EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYG 578 (579)
Q Consensus 538 ~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~~ 578 (579)
..+.+||||+||+||+++|++||+|+++.+++|+++++|+.
T Consensus 394 ~~~~~gGTslLI~VgV~ldt~~qi~s~l~~~~Y~~~~~~~~ 434 (434)
T PRK12907 394 PSAQIGGTSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN 434 (434)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 22458999999999999999999999999999999999873
No 3
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.2e-89 Score=741.00 Aligned_cols=409 Identities=30% Similarity=0.524 Sum_probs=338.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHH
Q 008056 150 SFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASIL 226 (579)
Q Consensus 150 ~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLFsLGI~PyItASII 226 (579)
.++++++|+|++||++++++||+|++||+||+|.++.++.+ +..++++.++.+ + ||++++|+|+|||+|||||||+
T Consensus 8 ~~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~-~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAsIi 86 (426)
T PRK09204 8 AFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLF-DQQSGGILGLFNLFSGGALSRFSIFALGIMPYITASII 86 (426)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHH-hhccccHHHHHHHHcccchhcccHHHhCcHHHHHHHHH
Confidence 34579999999999999999999999999999997653321 211123444443 2 4679999999999999999999
Q ss_pred HHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc----ccccccchhHHHHHHHHHHHHHHH
Q 008056 227 MQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS----IYAASHSVKHVMVTAFLLVCGAMT 302 (579)
Q Consensus 227 ~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~----~~~~~~~~~~~l~ivl~LvaGa~i 302 (579)
||+|+.++|+++|++||||+||+|+|++|||+|+++|++||++++.....+. .....++....++++++|++|+++
T Consensus 87 ~QLL~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs~i 166 (426)
T PRK09204 87 MQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMF 166 (426)
T ss_pred HHHHHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999864332221 111111344577889999999999
Q ss_pred HHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeec
Q 008056 303 MSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYY 382 (579)
Q Consensus 303 l~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~ 382 (579)
++||||+|||||+|||+|++|++||++++|+++.+.+.....+..++. .++..++++++++++++++|+++||||+||+
T Consensus 167 ~~wL~e~It~~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~rIPi~~~ 245 (426)
T PRK09204 167 LMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSIL-VFLLLIVLFLAVIAFVVFVEQAQRRIPVQYA 245 (426)
T ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHHHHHHHHheeeeeEEEEEEEeh
Confidence 999999999999999999999999999999999876643332222222 2233344455667789999999999999999
Q ss_pred cccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCCh-hHHHHHHHcCCCCCCCCcchHHHHHH
Q 008056 383 GFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-FWQHVKEILNPETSVGARPWVYYTIY 461 (579)
Q Consensus 383 ~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~-~~~~i~~~l~~~~s~~~~~~iy~iiy 461 (579)
++. .+++ ..+++++|+|+|+||+|+||+|||++++++|++++++.+++ |...+.++++|. .|+|.++|
T Consensus 246 ~~~--~~~~---~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~y 314 (426)
T PRK09204 246 KRQ--VGRK---MYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYLSPG------SPLYILLY 314 (426)
T ss_pred hhh--cccc---ccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhCCC------ChHHHHHH
Confidence 742 1121 23467899999999999999999999999999999984443 556677777764 37899999
Q ss_pred HHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCc
Q 008056 462 AFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEG 539 (579)
Q Consensus 462 ~~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~ 539 (579)
++++++||+|| ++.||||+||||||+|++|||+|||++|++||+|+++|++++||++++++|++|++++.+.+ ..
T Consensus 315 ~~lii~Fs~fy~~i~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~~p~~~~~~~~---~~ 391 (426)
T PRK09204 315 ALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIALLPEILQNALG---VP 391 (426)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC---cc
Confidence 99999999999 44689999999999999999999999999999999999999999999999999999987632 25
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008056 540 FSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 574 (579)
Q Consensus 540 ~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l 574 (579)
+++||||+||+||+++|++||+|+++.+++|++++
T Consensus 392 ~~~ggTslLI~Vgv~l~~~~qi~~~~~~~~Y~~~~ 426 (426)
T PRK09204 392 FYFGGTSLLIVVGVALDTMKQIESQLMSRQYEGFL 426 (426)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 67899999999999999999999999999999763
No 4
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=1.3e-86 Score=716.12 Aligned_cols=404 Identities=31% Similarity=0.529 Sum_probs=331.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHH
Q 008056 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASI 225 (579)
Q Consensus 149 ~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLFsLGI~PyItASI 225 (579)
+.++++++++|++||++++++||+|++||+||+|.+...+.. . .+++.++.+ + ++.+++|+|+|||+|||||||
T Consensus 3 ~~~~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~-~--~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsI 79 (417)
T CHL00161 3 QSKKKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSL-S--NNPLLNLLNTFSGGGFFVIGLFALGILPYINASI 79 (417)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhh-c--cccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHH
Confidence 456788999999999999999999999999999987643211 1 122334433 2 467899999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhc-ChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHH
Q 008056 226 LMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMS 304 (579)
Q Consensus 226 I~QLL~~~iP~L~kl~ke-g~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~ivl~LvaGa~il~ 304 (579)
+||+++.++|++++++|| |++||||+|++|||+|+++|++||++++.+. ..... .++..+.++++++|++|+++++
T Consensus 80 I~QLl~~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~-~~~~~--~~~~~~~~~~v~~L~~Gt~~~~ 156 (417)
T CHL00161 80 IIQLLTSIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWL-KPYLF--NWNLLLALEIVLALTSGSMIVL 156 (417)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc--CcchHHHHHHHHHHHHHHHHHH
Confidence 999999889999999997 9999999999999999999999999987432 21111 1233457788999999999999
Q ss_pred HHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccc
Q 008056 305 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGF 384 (579)
Q Consensus 305 WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~ 384 (579)
||||+|||||+|||+|++|++||++++|+.+.+.+.... +..+.. ..+.+++++++++++++++++++||||+||+++
T Consensus 157 wL~e~it~~GiGnGiSliI~~~I~~~~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~vi~~vv~~~~~~rrIPi~~~~~ 234 (417)
T CHL00161 157 WLSELITEKGLGNGSSLLIFFNIVSNLPKLLQSLLFSLS-ANITIL-SILLLLFLFFITLIGIIFLQEAIRKIPLISAKQ 234 (417)
T ss_pred HHHHHHHhcCcCcchHHHHHHHHHHHHHHHHHHHHHHhc-cchhHH-HHHHHHHHHHHHHHHHHHhhcceEEEEEEEhhh
Confidence 999999999999999999999999999998876553322 212211 112223345556777899999999999999975
Q ss_pred cccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCChhHHH---HHHHcCCCCCCCCcchHHHHHH
Q 008056 385 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH---VKEILNPETSVGARPWVYYTIY 461 (579)
Q Consensus 385 ~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~~~~~---i~~~l~~~~s~~~~~~iy~iiy 461 (579)
+. .+..+++++|+|+|+||+|+||+|||++++++|+++++++.+.++.. ...++++ ..++|.++|
T Consensus 235 ~~------~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~------~~~~y~~~y 302 (417)
T CHL00161 235 LG------KSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLAS------FKILYLVLY 302 (417)
T ss_pred hc------cccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCc------ccHHHHHHH
Confidence 32 11234567999999999999999999999999999999986543333 2222322 247789999
Q ss_pred HHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCc
Q 008056 462 AFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEG 539 (579)
Q Consensus 462 ~~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~ 539 (579)
++++++||+|| ++.||||+||||||+|++|||+|||++|++||+|+++|++++||++++++|++|++++.+++ . ..
T Consensus 303 ~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~~-~-~~ 380 (417)
T CHL00161 303 FVLILFFSYFYSTIVLNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVLN-L-SV 380 (417)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-c-cc
Confidence 99999999999 45689999999999999999999999999999999999999999999999999999987654 2 22
Q ss_pred cc-ccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008056 540 FS-IGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 574 (579)
Q Consensus 540 ~~-~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l 574 (579)
+. +||||+||+||+++|++||+|+++.+++|+++.
T Consensus 381 ~~~~ggtslLI~Vgv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 381 FKGLGTTSLLILVGVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44 699999999999999999999999999999875
No 5
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.3e-84 Score=696.62 Aligned_cols=388 Identities=19% Similarity=0.289 Sum_probs=316.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccc---cccccccchhhcCchhHHHHHH
Q 008056 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD---FGAELKLSFFQLGISPQIVASI 225 (579)
Q Consensus 149 ~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~---~ga~~~~SLFsLGI~PyItASI 225 (579)
+.++++|+|+|++||++++++||+|++||+||+|.++.+++. +.+..+.+ .|+++++|+|+|||+|||||||
T Consensus 5 ~~~~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~-----~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsI 79 (404)
T PRK12417 5 KKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGH-----ESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMI 79 (404)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCcc-----chHHHHHHHhcccccccCcHHHHccHHHHHHHH
Confidence 467789999999999999999999999999999988653311 11111111 2568899999999999999999
Q ss_pred HHHHHHhH-hhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHH
Q 008056 226 LMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMS 304 (579)
Q Consensus 226 I~QLL~~~-iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~ivl~LvaGa~il~ 304 (579)
+||+|+.. +|++++++|| |.||+ |||+|+++|++||++++.. ..+.. .....+.++++++|++|++++|
T Consensus 80 I~QLL~~~~~~~l~~~~ke-e~gr~-----~r~ltl~la~iQs~~~~~~-~~~~~---~~~~~~~~~~~l~L~aGt~~~~ 149 (404)
T PRK12417 80 ILQLFSYRKRDGLMKQTIE-EQHYR-----ERILTLIIAVIQSLAVILS-LPSKE---RISQTNILLNTLILVTGTMFLV 149 (404)
T ss_pred HHHHHHhCCCcchhhcChH-HHHHH-----HHHHHHHHHHHHHHHHHHH-hcccc---cchhhHHHHHHHHHHHHHHHHH
Confidence 99999998 8999999988 77775 4999999999999999743 33211 1111356788999999999999
Q ss_pred HHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccc
Q 008056 305 WICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGF 384 (579)
Q Consensus 305 WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~ 384 (579)
||||+|||||+| |+|++|++||++++|+++.+.+.... . .....+.+++++++.++++|+++||||+||+++
T Consensus 150 WL~E~it~~GIG-G~SliI~~~Iv~~~p~~~~~~~~~~~-----~--~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~ 221 (404)
T PRK12417 150 WLSDLNARYGIG-GPMPIVLVSMIKSIPQDVIEYIDASH-----I--VIILLILLVIITLFFLYFIELVEYRIPYNDIMN 221 (404)
T ss_pred HHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhh
Confidence 999999999999 99999999999999999877653210 1 111123333444556889999999999999875
Q ss_pred cccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCCh-----hHHHHHHHcCCCCCCCCcchHHHH
Q 008056 385 KLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-----FWQHVKEILNPETSVGARPWVYYT 459 (579)
Q Consensus 385 ~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~-----~~~~i~~~l~~~~s~~~~~~iy~i 459 (579)
. .++ .+++|+|+|+|+||+||+|||++++++|+++++++.+. |......++++. .|+|.+
T Consensus 222 ~--~~~-------~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 286 (404)
T PRK12417 222 H--NRF-------KMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFG------SPLGVT 286 (404)
T ss_pred h--ccC-------CCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCC------CcHHHH
Confidence 3 111 25699999999999999999999999999999986321 222233334332 367899
Q ss_pred HHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccC
Q 008056 460 IYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRIN 537 (579)
Q Consensus 460 iy~~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~ 537 (579)
+|++++++|+||| +..||||+||||||+|++|||+||||+|++||+|+++|++++||++++++|++|.+++.. + .+
T Consensus 287 ~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~-~-~~ 364 (404)
T PRK12417 287 VYLILQFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLF-D-PH 364 (404)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-Cc
Confidence 9999999999999 556999999999999999999999999999999999999999999999999999998764 1 11
Q ss_pred -CcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008056 538 -EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 576 (579)
Q Consensus 538 -~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 576 (579)
.++.+||||+||+||+++|+.||+|+++.+++|++++++
T Consensus 365 ~~~~~~ggtsllI~Vgv~ldt~~qi~s~l~~~~Y~~~~~~ 404 (404)
T PRK12417 365 LSTEIYFSGQFMMFVGMSFNIADEIRALLYFDKYKPLLNQ 404 (404)
T ss_pred cccceeccchheehhhhHHHHHHHHHHHHHHHHHhHHhcC
Confidence 225689999999999999999999999999999999863
No 6
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=6.3e-84 Score=694.09 Aligned_cols=398 Identities=28% Similarity=0.434 Sum_probs=319.3
Q ss_pred HHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCc---cccccccccccccchhhcCchhHHHHHHHHHHHHh-
Q 008056 157 RRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGS---VDELGDFGAELKLSFFQLGISPQIVASILMQVLCH- 232 (579)
Q Consensus 157 ~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~---~~~l~~~ga~~~~SLFsLGI~PyItASII~QLL~~- 232 (579)
|+|++||++++++||+|++||+||+|.++.++++.+ +. +.++...+|++++|+|+|||+|||||||+||+|+.
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~---~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~ 77 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQ---NGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGD 77 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhcc---ccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999865443211 11 22233346789999999999999999999999975
Q ss_pred HhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008056 233 IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISE 312 (579)
Q Consensus 233 ~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~ivl~LvaGa~il~WL~ElItk 312 (579)
..|.+++++|||++||+|+|++||++|+++|++||.+++.... ++. ..+++..+.++++++|++|+++++||||+|||
T Consensus 78 ~~~~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~-~~~-~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~ 155 (410)
T TIGR00967 78 VPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGM-YGY-VGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK 155 (410)
T ss_pred cChHHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999862222 111 11233445778899999999999999999999
Q ss_pred cCCCCcchHHhHHhHhhHHHHHHHHHHHhhh--cCC-cc---cHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccc
Q 008056 313 SGFGQGSSLIICVGILTGYTETLYKMLSQLL--GSS-VR---WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 386 (579)
Q Consensus 313 ~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~--~~~-~~---~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~ 386 (579)
||+|||+|++|++||++++|+++.+.+.... .+. .+ ..+.+ ..++++++++++++++|+++||||+||++++.
T Consensus 156 ~GiGnG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~ 234 (410)
T TIGR00967 156 YGIGNGISLLIFAGIIATIPSGLLQPTEVRQSKVRDLISFLQNLPFL-LYLIATIIVFAVVVFVQQARRKIPIQSAKRQG 234 (410)
T ss_pred cCcccCcHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHH-HHHHHHHHHHHHHheeeeeEEEEEEEEhhhhc
Confidence 9999999999999999999999987664211 111 11 12222 23344455677789999999999999997532
Q ss_pred cccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCChhHHHHHHHcCCCCCCCCcchHHHHHHHHHHH
Q 008056 387 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVF 466 (579)
Q Consensus 387 ~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~~~~~i~~~l~~~~s~~~~~~iy~iiy~~~ii 466 (579)
. + . .++++|+|+|+||+|+||+|||++++++|+++++++.+.+.. .++.+++.+++..+|+|.++|+++++
T Consensus 235 ~--~----~-~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~y~~lii 305 (410)
T TIGR00967 235 G--R----R-GSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQGG--AWFLNPILSLSLSDPIGAILYLILII 305 (410)
T ss_pred C--C----C-CCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 1 1 1 346799999999999999999999999999999987442211 11122222233335789999999999
Q ss_pred HHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccc
Q 008056 467 LFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 544 (579)
Q Consensus 467 ~Fs~f~i--~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~gg 544 (579)
+||+||. ..||||+||||||+|++|||+||||+|++||+|+++|+|++||++++++|++|++++.+. ++.....+||
T Consensus 306 ~Fs~f~~~~~~~p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~-~~~~~~~~gg 384 (410)
T TIGR00967 306 FFSFFYVELQLNPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIG-GLPTSKGLGG 384 (410)
T ss_pred HHHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccCch
Confidence 9999994 458999999999999999999999999999999999999999999999999999998762 2222224789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHH
Q 008056 545 TSVLIIVGSIIELRRSYQAYNVMPSL 570 (579)
Q Consensus 545 TsLLIlVgvil~~~~qi~a~~~~~~y 570 (579)
||+||+||+++|++||+++++.+++|
T Consensus 385 tsiLI~Vgv~~~~~~qi~~~~~~~~y 410 (410)
T TIGR00967 385 TSLLIVVGVAIDTYKQLESYLISRNY 410 (410)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999886
No 7
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=4.5e-83 Score=695.33 Aligned_cols=410 Identities=19% Similarity=0.210 Sum_probs=333.5
Q ss_pred hhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccccch
Q 008056 134 FLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212 (579)
Q Consensus 134 ~~~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SL 212 (579)
|||.+|+.... ||+++|.+++++|+|++||++++++||+|++||+||+|.++ .+ . +.+++.++|.+++|+
T Consensus 3 ~~~~~~~~~~~~P~v~~p~~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~-~-------l~~l~~~~gg~~~sl 73 (462)
T PRK08568 3 FLDKLEPILERLPAVKRPKGHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QD-L-------FELLRIIFAGSFGTL 73 (462)
T ss_pred HHHHHHHHHHhCCCccCCCcCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-cc-H-------HHHHHHHhCCcccch
Confidence 68999998887 99999999999999999999999999999999999999875 12 1 223333444458999
Q ss_pred hhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhHHHH
Q 008056 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYA-ASHSVKHVMV 291 (579)
Q Consensus 213 FsLGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~-~~~~~~~~l~ 291 (579)
|+|||+|||||||+||+|+.. ++.+++++.++||+|+|++|||+|+++|++||++++... .+.... ...+..+.++
T Consensus 74 f~LGI~PyItAsII~QLL~~~--~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~-~~~~~~~~~~~~~~~~~ 150 (462)
T PRK08568 74 LQLGIGPIVTAGIILQLLVGS--KLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAG-AFGPATGLASTPLLALL 150 (462)
T ss_pred HHhCcHHHHHHHHHHHHHhhC--chheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCcccccccHHHHHH
Confidence 999999999999999999754 444656666899999999999999999999999997432 222110 0123445778
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHH---------------hhhcCC--cccH----
Q 008056 292 TAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLS---------------QLLGSS--VRWW---- 350 (579)
Q Consensus 292 ivl~LvaGa~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~---------------~~~~~~--~~~~---- 350 (579)
++++|++|+++++||||+|||||+|||+|++|++||++++|+++++... ....+. .+.+
T Consensus 151 i~l~L~~Gt~i~~wL~E~Itk~GiGnGiSliI~~gI~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~ 230 (462)
T PRK08568 151 IFLQLFLGGILIILLDELVSKWGIGSGISLFILAGVSQTIFVGLFNWLTGGQGLPVGFIPALFSAITSGNLTLALLLTTR 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHHHHHHHHHHhhhhcccCccccchHHHHHHHHhcCccchhhhhccc
Confidence 8999999999999999999999999999999999999999999876541 111111 0111
Q ss_pred -HHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHH
Q 008056 351 -PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILA 429 (579)
Q Consensus 351 -~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~ 429 (579)
+. +..++++++++++++++|+++||||+||++. + ++++|+|+|+||+|+||+|||++++++|++++
T Consensus 231 l~~-l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~------~------g~~s~iPiKln~aGvmPiIFassll~~p~~i~ 297 (462)
T PRK08568 231 GLL-LLGLITTIVIFLIVVYLESMRVEIPLSHGRV------R------GARGRYPLKFIYVSVLPVILVRALQANIQLFG 297 (462)
T ss_pred ccH-HHHHHHHHHHHHHheeEEeeEEEEEEEeccc------c------CCCceeeEEecccCcHHHHHHHHHHHHHHHHH
Confidence 22 2234445556777899999999999998862 1 35689999999999999999999999999999
Q ss_pred HHhCCh---h-----------HHHHHHHcCCCCCCC--Ccch----HHHHHHHHHHHHHHHHH--hc-cChHHHHHHHHH
Q 008056 430 SILGSP---F-----------WQHVKEILNPETSVG--ARPW----VYYTIYAFFVFLFNIFD--IA-NLPKEIADYLNK 486 (579)
Q Consensus 430 ~~l~~~---~-----------~~~i~~~l~~~~s~~--~~~~----iy~iiy~~~ii~Fs~f~--i~-~~PkdiAe~Lkk 486 (579)
+++.+. + ..++.++++|+.+.. ..++ +|.++|++++++||+|| ++ .||||+||||||
T Consensus 298 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk 377 (462)
T PRK08568 298 QLLQRLGIPILGTYDSSGASPISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQN 377 (462)
T ss_pred HHHhhcCchhhhhcccccccchhHHHHHhCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 886321 2 145677788764421 1123 47888999999999999 44 589999999999
Q ss_pred cCCccccccCChh-hHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 008056 487 MGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYN 565 (579)
Q Consensus 487 ~G~~IpGvRPG~~-T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~ 565 (579)
||++|||+|||++ |++||+|+++|+|++||++++++|++|++++.. + +|||++|+||+++|++||+++++
T Consensus 378 ~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~~~~~----g-----~gtslLI~Vgv~~~~~~qi~~~~ 448 (462)
T PRK08568 378 SGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADLLGAL----G-----GGTGLLLTVSIVYQLYEEIAREQ 448 (462)
T ss_pred cCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----CchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999997 999999999999999999999999999999764 2 79999999999999999999999
Q ss_pred hhHHHHHHHhhh
Q 008056 566 VMPSLSKALRRY 577 (579)
Q Consensus 566 ~~~~y~~~l~~~ 577 (579)
.+++|+++=|--
T Consensus 449 ~~~~Y~~~~~~~ 460 (462)
T PRK08568 449 LMEMYPLLRRFL 460 (462)
T ss_pred HHHHhHHHHHHh
Confidence 999999764433
No 8
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=4e-79 Score=653.56 Aligned_cols=385 Identities=18% Similarity=0.296 Sum_probs=303.5
Q ss_pred HHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCcccccccc--ccccccchhhcCchhHHHHHHHHHHHHh
Q 008056 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGISPQIVASILMQVLCH 232 (579)
Q Consensus 155 ~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~--ga~~~~SLFsLGI~PyItASII~QLL~~ 232 (579)
.+|+|++||++++++||+|++||+||+|.+.. .+.....+.+.+++.+ |+..++|+|+|||+|||||||+||+|+.
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~--~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~ 78 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQ--DMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSF 78 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhH--HHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998752 1111111123333333 4567889999999999999999999998
Q ss_pred -HhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 008056 233 -IVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTIS 311 (579)
Q Consensus 233 -~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~ivl~LvaGa~il~WL~ElIt 311 (579)
.+|++++++|| +.|| .|||+|+++|++||.+++.. ..+.. .....+.++++++|++|+++++||||+||
T Consensus 79 ~~~~~l~~~~~~-~~~~-----~tr~ltl~~a~iQs~~~~~~-~~~~~---~~~~~~~~~~vl~L~~Gt~iv~wL~E~it 148 (395)
T TIGR02920 79 TKSDGFDAQSPK-EQQY-----RERFLTLIIAIIQGLAIIHS-FTNKN---GLSDFNMLLATLILVTGTCLLVWLADLNA 148 (395)
T ss_pred CcCcchhhhCHH-HhhH-----HHHHHHHHHHHHHHHHHHHH-hhccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999887 3333 39999999999999998643 32211 11112466778999999999999999999
Q ss_pred ccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeecccccccccc
Q 008056 312 ESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAR 391 (579)
Q Consensus 312 k~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r 391 (579)
|||+| |+|++|++||++++|+++.+.+.. +. ...+...++++++++++++++++++||||++|+++.. |
T Consensus 149 ~~GiG-G~sllI~~~I~s~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~i~~~v~~~~~~~rIpv~~~~~~~----~ 217 (395)
T TIGR02920 149 KYGIG-GSMPIVLVSMLKNIPSNVFELFQM---SY---IWLIALLILLTLVALFLLAFIERAEYRIPVNDISLHN----R 217 (395)
T ss_pred CCCcc-hHHHHHHHHHHHHHHHHHHHHHhc---ch---HHHHHHHHHHHHHHHHHHHheecceEEEEEEEchhhc----c
Confidence 99999 999999999999999998765531 11 1112222333444455689999999999999986431 1
Q ss_pred CCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHh----CC-hhHHHHHHHcCCCCCCCCcchHHHHHHHHHHH
Q 008056 392 EDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASIL----GS-PFWQHVKEILNPETSVGARPWVYYTIYAFFVF 466 (579)
Q Consensus 392 ~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l----~~-~~~~~i~~~l~~~~s~~~~~~iy~iiy~~~ii 466 (579)
+++++|+|+|+||+|+||+|||++++++|+++++.+ .+ .+...+...+ +..+++|.++|+++++
T Consensus 218 -----~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~i~y~~lii 286 (395)
T TIGR02920 218 -----SNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNSSLINNWVFQF------SFSSPVGILIYLILQM 286 (395)
T ss_pred -----CCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHhhcc------CCcchHHHHHHHHHHH
Confidence 135699999999999999999999999996665433 21 1111111111 2234679999999999
Q ss_pred HHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccc
Q 008056 467 LFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 544 (579)
Q Consensus 467 ~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~gg 544 (579)
+||+|| +..||||+||||||+|++|||+||||+|++||+|+++|+|++||++++++|++|.+++.+++.. ..+.+||
T Consensus 287 ~fs~fys~i~~nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~-~~~~~gg 365 (395)
T TIGR02920 287 LLSYFFTFVNINPKEISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHL-LTEAYIP 365 (395)
T ss_pred HHHHHHHHheECHHHHHHHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cceeehh
Confidence 999998 4568999999999999999999999999999999999999999999999999999998764321 2466899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008056 545 TSVLIIVGSIIELRRSYQAYNVMPSLSKAL 574 (579)
Q Consensus 545 TsLLIlVgvil~~~~qi~a~~~~~~y~~~l 574 (579)
||++|+||+++|+.||+|+++.+++|++++
T Consensus 366 tsllI~vgv~ldt~~qi~~~~~~~~Y~~~~ 395 (395)
T TIGR02920 366 GQFMMITGMSFNIADEIRTILYFDRYKPLL 395 (395)
T ss_pred hhhhhhhhhHHhHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999864
No 9
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=5.4e-78 Score=656.50 Aligned_cols=402 Identities=17% Similarity=0.225 Sum_probs=319.3
Q ss_pred hhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCcccccccccccccc
Q 008056 132 NRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 210 (579)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~ 210 (579)
.||||.+|+.... ||++++.++.++|+|++||++++++||+|++||+||+|.++.+| ++.++++..+..++
T Consensus 5 ~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~--------~~~~~~~ifag~~~ 76 (474)
T PTZ00219 5 TRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSD--------PFYWMRVILASNRG 76 (474)
T ss_pred chHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccc--------hHHHHHHHHhcCcc
Confidence 4678888888777 99999999999999999999999999999999999999876433 23334443344599
Q ss_pred chhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHH
Q 008056 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVM 290 (579)
Q Consensus 211 SLFsLGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l 290 (579)
|+|+|||+|||||||+||||++. ++.+++++.+++|+|+|++||++|+++|++||++++ ....++. ..+.+....+
T Consensus 77 slf~LGI~PyItAsII~QLL~~~--~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~-~~~~~g~-~~~~~~~~~~ 152 (474)
T PTZ00219 77 TLMELGISPIVTSSMVMQLLAGS--KIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYV-WSGMYGD-ISEIGAGNAI 152 (474)
T ss_pred hHHHhccHHHHHHHHHHHHHhhC--CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccc-ccCccHHHHH
Confidence 99999999999999999999753 344445555566999999999999999999999986 3322221 1122333567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-cCCCCcchHHhHHhHhhHHHHHHHHHHHhh-------------------hc-CCcc-
Q 008056 291 VTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKMLSQL-------------------LG-SSVR- 348 (579)
Q Consensus 291 ~ivl~LvaGa~il~WL~ElItk-~GIGnG~SLiI~~gIis~lp~~l~~~~~~~-------------------~~-~~~~- 348 (579)
+++++|++|+++++||||++|| ||+|||+||+|++||++++|++.++..... .. +..+
T Consensus 153 ~iilqL~~g~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 232 (474)
T PTZ00219 153 LIILQLFFAGIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRA 232 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccch
Confidence 8889999999999999999999 999999999999999999997655211000 00 0000
Q ss_pred --------cHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHH
Q 008056 349 --------WWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTY 420 (579)
Q Consensus 349 --------~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAss 420 (579)
-.+.++ .++++++++++++++++++||||++|++.+ ++++++|+|+||+|+||+|||++
T Consensus 233 l~~~~~r~~l~~~~-~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~------------g~~~~~PiKln~agvmPiIfass 299 (474)
T PTZ00219 233 LKEAFYRPHLPNLT-NLLATVLVFLVVIYFQGFRVDLPLKSQKVR------------GQQQSYPIKLFYTSNIPIILQTA 299 (474)
T ss_pred hhhhhhhcccccHH-HHHHHHHHHHhheeeeeeEEEEeeeccccc------------CcCcccceeecccccHHHHHHHH
Confidence 001112 223445567778999999999999998642 34577799999999999999999
Q ss_pred HHHhHHHHHHHhCC----h--------hH-----------HHHHHHcCCCCCCC--CcchHHHHHHHHHHHHHHHHH---
Q 008056 421 LLAFPSILASILGS----P--------FW-----------QHVKEILNPETSVG--ARPWVYYTIYAFFVFLFNIFD--- 472 (579)
Q Consensus 421 Ll~~P~~i~~~l~~----~--------~~-----------~~i~~~l~~~~s~~--~~~~iy~iiy~~~ii~Fs~f~--- 472 (579)
++++|+++++++.+ . |. +++.+|++|+.++. ..+|+|.++|++++++||+||
T Consensus 300 ll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~ 379 (474)
T PTZ00219 300 LVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKT 379 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988621 1 21 12666777754432 135678899999999888876
Q ss_pred -hc---cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccchhHH
Q 008056 473 -IA---NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 548 (579)
Q Consensus 473 -i~---~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLL 548 (579)
++ .||||+||||||+|++|||+|||++|++||+|+++|+|++||++++++|++|++++.. + ||||+|
T Consensus 380 ~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~~----~-----gGTslL 450 (474)
T PTZ00219 380 WIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGAI----G-----SGTGIL 450 (474)
T ss_pred HHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-----Cchhhh
Confidence 22 5899999999999999999999999999999999999999999999999999999741 2 899999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 008056 549 IIVGSIIELRRSYQAYNVM 567 (579)
Q Consensus 549 IlVgvil~~~~qi~a~~~~ 567 (579)
|+||++++++|++..+..+
T Consensus 451 I~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 451 LAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 9999999999999888654
No 10
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=5.5e-71 Score=582.60 Aligned_cols=331 Identities=31% Similarity=0.534 Sum_probs=278.1
Q ss_pred chhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccccc-----ccc
Q 008056 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAA-----SHS 285 (579)
Q Consensus 211 SLFsLGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~-----~~~ 285 (579)
|+|+|||+|||||||+||++ ..|+++|++++||+||+|++++||++|+++|++||++++.....++.... ..+
T Consensus 1 SlfsLGI~PyitAsIi~Qll--~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~ 78 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLL--IIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSG 78 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHH--HSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTC
T ss_pred ChHhhccHHHHHHHHHHHHH--hcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchH
Confidence 79999999999999999999 68999999999999999999999999999999999999755444432211 123
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhh---cCCcccHHHHHHHHHHHHH
Q 008056 286 VKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLL---GSSVRWWPFMLGLLGVFTI 362 (579)
Q Consensus 286 ~~~~l~ivl~LvaGa~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~---~~~~~~~~~ll~il~i~ll 362 (579)
....++++++|++|+++++||||+|||||+|||+|++|++||++++|+++.+.+.... +...+++. .+..++++++
T Consensus 79 ~~~~~~i~l~L~~G~~i~~wL~e~it~~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~ 157 (346)
T PF00344_consen 79 FINYLLIVLQLVAGSMILIWLSELITKYGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSNALF-LLIILIITLV 157 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSSTHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHH
Confidence 4456899999999999999999999999999999999999999999999888776544 12223432 3444556666
Q ss_pred HHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCChh----H-
Q 008056 363 VTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPF----W- 437 (579)
Q Consensus 363 vi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~~----~- 437 (579)
++++++++|+++||||+||+++. + ...++++|+|+|+||+|+||+||+++++++|+++++++.+.+ .
T Consensus 158 ~~~~~v~l~~~~~rIPi~~~~~~-~-------~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~~~~~~~ 229 (346)
T PF00344_consen 158 VIALVVYLQEAERRIPIQYARIV-N-------SSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQFPNNWLV 229 (346)
T ss_dssp HHHHHHHHHHCEEEECEBBSSSB----------SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCSCCSCCS
T ss_pred HHHhheeeeeeEEEEEEEecccc-c-------cCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCCccccHH
Confidence 67889999999999999999752 1 122568999999999999999999999999999999985422 1
Q ss_pred HHHHHHcCCCCCCCCcchHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHh
Q 008056 438 QHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWG 515 (579)
Q Consensus 438 ~~i~~~l~~~~s~~~~~~iy~iiy~~~ii~Fs~f~i--~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iG 515 (579)
.++.++++. ....++|.++|++++++||+||. ..+|||+||+|||+|++|||+|||++|++||+|++++++++|
T Consensus 230 ~~i~~~~~~----~~~~~~y~~~~~~li~~Fs~~~~~~~~~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~~~~~~G 305 (346)
T PF00344_consen 230 SGIAYYFSQ----NLNSPLYIIFYLILIILFSYFFSFININPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIPRLSFLG 305 (346)
T ss_dssp SCCHHHTSS----SHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc----CcchHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHHHHhhhh
Confidence 234455521 11247899999999999999994 347999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHH
Q 008056 516 GLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 559 (579)
Q Consensus 516 al~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~ 559 (579)
|++++++|++|++++.+.+ .++.++|||++|+||+++|++|
T Consensus 306 ~~~l~~ia~~p~~~~~~~~---~~~~~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 306 ALFLALIAVLPLIFGLFGG---SSLFFGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHHHHHHHHHHTTSSS---CSCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---cchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999987643 4566899999999999999986
No 11
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-57 Score=461.91 Aligned_cols=406 Identities=16% Similarity=0.193 Sum_probs=340.0
Q ss_pred ccchhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccc
Q 008056 129 MYKNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAE 207 (579)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~ 207 (579)
|.++||+|++|++..+ ||++.|.+|.++++|++||...+++|.+.+|||++|+..+...| +++|++...|.
T Consensus 1 m~g~R~l~~vkPf~~~lPEv~~Perk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~D--------P~yw~Rvilas 72 (476)
T KOG1373|consen 1 MSGFRFLDLVKPFLSFLPEVEAPERKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTAD--------PFYWMRVILAS 72 (476)
T ss_pred CCCcchhhhhhhhhccCccccCchhcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCC--------cHHHHHHHHhc
Confidence 5678999999999999 99999999999999999999999999999999999998765433 68899888788
Q ss_pred cccchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Q 008056 208 LKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVK 287 (579)
Q Consensus 208 ~~~SLFsLGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~ 287 (579)
+|.++++|||.|++|++.+||+|++. ++.+.+.+-+++|+.+|..||.+++++++.||..++. ...|+.. .+.+..
T Consensus 73 nrgTLMelGisPivtSglimQlLag~--kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~-tG~yG~p-~dLg~~ 148 (476)
T KOG1373|consen 73 NRGTLMELGISPIVTSGLIMQLLAGS--KIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVM-TGMYGSP-SDLGVG 148 (476)
T ss_pred CCcchhhhccchhhHHHHHHHHHccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcccCCh-hhcchh
Confidence 99999999999999999999999987 6777777888999999999999999999999999974 4445431 234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-cCCCCcchHHhHHhHhhHHHHHHHHHHHhhh------cCCc-------------
Q 008056 288 HVMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKMLSQLL------GSSV------------- 347 (579)
Q Consensus 288 ~~l~ivl~LvaGa~il~WL~ElItk-~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~------~~~~------------- 347 (579)
..+++++||+..+.+++.|||+++| ||+|||+||+|.+|||+++.|..++.-.... .|+.
T Consensus 149 ~clLii~QL~~Agiiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k 228 (476)
T KOG1373|consen 149 ICLLIILQLFFAGIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDK 228 (476)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchH
Confidence 6789999999999999999999999 9999999999999999999998765321000 0000
Q ss_pred ----------ccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHH
Q 008056 348 ----------RWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLT 417 (579)
Q Consensus 348 ----------~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIf 417 (579)
.-+|++. .++..++++..++|+|.-+.++|++.++. +|+.+.+|||+.|++.||+|+
T Consensus 229 ~~al~eAF~RqnLPNl~-nl~at~lif~iViYlQgfRVeLPirS~r~------------RG~~~~yPIKL~YTsn~pIil 295 (476)
T KOG1373|consen 229 VRALREAFYRQNLPNLT-NLLATVLIFLIVIYLQGFRVELPIRSTRA------------RGQYGSYPIKLFYTSNMPIIL 295 (476)
T ss_pred HHHHHHHHHHhcccHHH-HHHHHHHHHHHHhhccceEEEeeecchhh------------cccCCccceEeeecCCcHHHH
Confidence 0114433 23444444555667777777999988753 267899999999999999999
Q ss_pred HHHHHHhHHHHHHHhCCh------------hH-----------HHHHHHcCCCCCCCC--cchHHHHHHHHHHH----HH
Q 008056 418 TTYLLAFPSILASILGSP------------FW-----------QHVKEILNPETSVGA--RPWVYYTIYAFFVF----LF 468 (579)
Q Consensus 418 AssLl~~P~~i~~~l~~~------------~~-----------~~i~~~l~~~~s~~~--~~~iy~iiy~~~ii----~F 468 (579)
.|++.+....++|++... |. .++.+|++|+.++.. .+|+++++|.+|++ +|
T Consensus 296 qsalvsni~~isqll~~k~~~n~~v~llG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~F 375 (476)
T KOG1373|consen 296 QSALVSNIFVISQLLYKKFPGNFLVRLLGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALF 375 (476)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEEEeeeecCCCCcccccccceeEecCChHHHHHHhhCcchhHHHHHHHHHHHHHH
Confidence 999999999998887211 11 256778888877763 57889999988877 78
Q ss_pred HHHHhcc---ChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccch
Q 008056 469 NIFDIAN---LPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFT 545 (579)
Q Consensus 469 s~f~i~~---~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~ggT 545 (579)
|.-|++. +|||+|++||+|+..++|+|.. ++.++|+|+++.++++||.+++.+.+++++++.. + +||
T Consensus 376 sktWievSgsSarDvAkqlKeQ~mvm~G~RE~-n~~~eLnr~IPtAA~~Gg~~igaltV~~d~lgai----G-----sgt 445 (476)
T KOG1373|consen 376 SKTWIEVSGSSARDVAKQLKEQQMVMRGHRET-NMAKELNRYIPTAAAFGGLCIGALTVLADLLGAI----G-----SGT 445 (476)
T ss_pred HhHHHHHcCCCHHHHHHHHHhccceecCcchh-hHHHHHHhhccHHHHhhhhHHHHHHHHHHHhhcc----c-----CCc
Confidence 8888653 5999999999999999999996 8999999999999999999999999999999875 4 799
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHH
Q 008056 546 SVLIIVGSIIELRRSYQAYNVMPS 569 (579)
Q Consensus 546 sLLIlVgvil~~~~qi~a~~~~~~ 569 (579)
++++.|.++++.+|.++.+...+.
T Consensus 446 gIllavt~iyqy~E~~~kE~~~~~ 469 (476)
T KOG1373|consen 446 GILLAVTIIYQYFEIFAKEQAQEG 469 (476)
T ss_pred eEEeehHHHHHHHHHHHHHHhhcC
Confidence 999999999999999988876654
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=89.20 E-value=0.15 Score=36.97 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=13.8
Q ss_pred HHHHhCccccCCCccCCC
Q 008056 168 VISRIGYFIPLPGFDRRL 185 (579)
Q Consensus 168 ~IyrlGs~IPLPGId~~~ 185 (579)
++|.+.++|||+|+....
T Consensus 1 ilYl~ls~ipLyG~~~~~ 18 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSAS 18 (35)
T ss_dssp HHHHHHHHSB-STSTTTT
T ss_pred CEEEEeeCCccccccCCC
Confidence 589999999999994443
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=52.72 E-value=38 Score=30.50 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhH-hhhHHHhhhcChhhHHHHhHHHHHHHHHHHH
Q 008056 219 PQIVASILMQVLCHI-VPSLVQLRKEGLDGHEKIKSYIWWISLGFAI 264 (579)
Q Consensus 219 PyItASII~QLL~~~-iP~L~kl~keg~~gr~ki~~~tr~ltl~~Ai 264 (579)
=.++.||++|++.++ .--+.+.+.+.++.+++.+....+.+.+..+
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v~i 92 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILVFI 92 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999886 3233445445555666677666666555433
No 14
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=41.33 E-value=4.3e+02 Score=29.31 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=21.8
Q ss_pred cCCCCcchHHhHHhHhhHHHHHHHHHH
Q 008056 313 SGFGQGSSLIICVGILTGYTETLYKML 339 (579)
Q Consensus 313 ~GIGnG~SLiI~~gIis~lp~~l~~~~ 339 (579)
.|+| |+|++|++|++-+..+++....
T Consensus 382 ~~~g-gtslLI~Vgv~~~~~~qi~a~~ 407 (417)
T CHL00161 382 KGLG-TTSLLILVGVAIDTSRQIQTYL 407 (417)
T ss_pred cccc-hhhhhhhHHHHHHHHHHHHHHH
Confidence 3677 9999999999999998886544
No 15
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.60 E-value=1.8e+02 Score=28.10 Aligned_cols=32 Identities=28% Similarity=0.160 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHcCCccccccCChhhHHHHHHhh
Q 008056 476 LPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 508 (579)
Q Consensus 476 ~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi 508 (579)
+|+|+|++++... .+...++.+++.+....+.
T Consensus 52 ~P~~iA~~i~~~~-~i~~~~~~~~~~~~~~~i~ 83 (181)
T PF08006_consen 52 SPKEIAREILAEY-SIKEEEKKKSWRNILRAIL 83 (181)
T ss_pred CHHHHHHHHHHhh-hhhhhhccchhhhhHHHHH
Confidence 7999999999754 4566665555555554443
No 16
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=29.33 E-value=1.8e+02 Score=26.41 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc-ccccch---hHHHHHHHHHHHHHHHHHH
Q 008056 256 WWISLGFAILEAVIVACYSLPYSIY-AASHSV---KHVMVTAFLLVCGAMTMSW 305 (579)
Q Consensus 256 r~ltl~~AiiQa~~i~~~~~~~~~~-~~~~~~---~~~l~ivl~LvaGa~il~W 305 (579)
..+-+++|++|.++...+.+..+.- ...++. .+.+.++++++.|+.-+||
T Consensus 47 ~~~i~~lA~vQi~VqL~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 47 LGTILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556788999999986655433211 112332 2345678889999987776
No 17
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=28.77 E-value=66 Score=27.98 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=34.6
Q ss_pred cCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHH
Q 008056 487 MGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATS 525 (579)
Q Consensus 487 ~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvl 525 (579)
.|.-+||--||.|..-.+.|...+.|.+.++.-++++..
T Consensus 32 ~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 32 AGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999987776654
No 18
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=28.06 E-value=2.2e+02 Score=25.32 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc-ccccch---hHHHHHHHHHHHHHHHHHH
Q 008056 256 WWISLGFAILEAVIVACYSLPYSIY-AASHSV---KHVMVTAFLLVCGAMTMSW 305 (579)
Q Consensus 256 r~ltl~~AiiQa~~i~~~~~~~~~~-~~~~~~---~~~l~ivl~LvaGa~il~W 305 (579)
..+-+++|++|.+....+.+.-+.- .+.++. .+..++++++++||.-+|+
T Consensus 36 ~~~i~~~A~iQi~vqL~~FlHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 36 LVIIIVLAVVQILVHLVFFLHLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999986554433211 112332 3346778899999988777
No 19
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=27.81 E-value=3.2e+02 Score=24.62 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008056 514 WGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLS 571 (579)
Q Consensus 514 iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~ 571 (579)
+-++.+.++++.|.+.+..-+-+| +. .|++++..++++.-..-.+..+....+.+
T Consensus 38 ~~~i~~l~~~ifP~~~~~vA~~lG--i~-~~~n~lf~~~i~~ll~~~~~l~~~is~le 92 (115)
T PF10066_consen 38 VFSIILLILSIFPNILDWVAKLLG--IG-RPPNLLFYLGILFLLVIIFSLYVRISRLE 92 (115)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHC--CC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677788988775433222 11 46777777777666666655555555554
No 20
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=26.90 E-value=5.2e+02 Score=25.64 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhccChHHHHHHHHHcCCccccccCCh-hhHHHHHHhhhhHHhHhHH--HHHHHHHHHHHH
Q 008056 453 RPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGK-ATIEYLTKIQASTRFWGGL--LLSILATSSTIL 529 (579)
Q Consensus 453 ~~~iy~iiy~~~ii~Fs~f~i~~~PkdiAe~Lkk~G~~IpGvRPG~-~T~~YL~kvi~rlt~iGal--~L~llAvlP~il 529 (579)
...+++.+..+.+.+||.||- +--..+||+|++. =|..||.| +|.+-|+.-+ .+..+|-+ +++.-+..-.++
T Consensus 56 ~~gl~~a~~gl~~l~~si~~~-fry~Rlar~L~~~---~~~~~P~k~~~~~~l~~Gl-~~nl~Gmllt~lG~~a~vG~L~ 130 (183)
T PF12263_consen 56 GIGLFLAICGLVALFFSIFWS-FRYTRLARRLRSP---NPAKRPSKADVVRLLRIGL-IINLVGMLLTLLGAQATVGTLV 130 (183)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc---CCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777778888888771 1237899999944 57889986 4555444322 23444433 234444444444
Q ss_pred HHH
Q 008056 530 DHY 532 (579)
Q Consensus 530 ~~~ 532 (579)
...
T Consensus 131 ak~ 133 (183)
T PF12263_consen 131 AKA 133 (183)
T ss_pred HHH
Confidence 443
No 21
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=23.93 E-value=2.8e+02 Score=25.38 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc-ccccch---hHHHHHHHHHHHHHHHHHHHHhhhh
Q 008056 256 WWISLGFAILEAVIVACYSLPYSIY-AASHSV---KHVMVTAFLLVCGAMTMSWICDTIS 311 (579)
Q Consensus 256 r~ltl~~AiiQa~~i~~~~~~~~~~-~~~~~~---~~~l~ivl~LvaGa~il~WL~ElIt 311 (579)
-.+.+++|++|......+.+.-+.- .+.++. .+.+.++++.++|++-+|+-.+.++
T Consensus 49 ~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~~n~~m 108 (111)
T COG3125 49 LIIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNM 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3567899999999876554332211 112332 3356677888899998888766554
No 22
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=23.84 E-value=2.9e+02 Score=24.43 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc-ccccch---hHHHHHHHHHHHHHHHHHH
Q 008056 257 WISLGFAILEAVIVACYSLPYSIY-AASHSV---KHVMVTAFLLVCGAMTMSW 305 (579)
Q Consensus 257 ~ltl~~AiiQa~~i~~~~~~~~~~-~~~~~~---~~~l~ivl~LvaGa~il~W 305 (579)
..-+++|++|.+....+-+.-+.- ...++. .+...+++++++||.-+|+
T Consensus 39 ~~i~~lA~iQi~VqL~~FLHm~~~~~~~~n~~~l~ft~~i~~i~v~GSlWIm~ 91 (94)
T TIGR02901 39 TIIIIFAFIQAGLQLIMFMHAGESEDGKVQIYNIYYSAFIALVTVFGSLWVMV 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHheeecCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345788999999976554433211 111332 2346778889999987776
No 23
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=21.59 E-value=3.9e+02 Score=32.52 Aligned_cols=88 Identities=10% Similarity=0.157 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHcCCccccccCCh-hhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHH
Q 008056 476 LPKEIADYLNKMGARIPNVKPGK-ATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSI 554 (579)
Q Consensus 476 ~PkdiAe~Lkk~G~~IpGvRPG~-~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvi 554 (579)
+.+|+.+++++.|--..-.++.+ --..+++..-..+.+ ++.+.+++..+++.+.. ....-++++++.+
T Consensus 35 s~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~----iL~~~a~ls~~~~~~~~-------~~iI~~iv~~~~~ 103 (867)
T TIGR01524 35 TNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIY----ILAMLMGVSYLTDDLEA-------TVIIALMVLASGL 103 (867)
T ss_pred CHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHH----HHHHHHHHHHHHhhHHH-------HHHhhhHHHHHHH
Confidence 68999999999996543333222 223355554333332 23344444444444311 1233456677788
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 008056 555 IELRRSYQAYNVMPSLSKAL 574 (579)
Q Consensus 555 l~~~~qi~a~~~~~~y~~~l 574 (579)
+..+++.+++...+++++..
T Consensus 104 i~~~~e~~a~ka~~~L~~l~ 123 (867)
T TIGR01524 104 LGFIQESRAERAAYALKNMV 123 (867)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 88899988887777777654
Done!