Query 008056
Match_columns 579
No_of_seqs 128 out of 1089
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjs_Y Preprotein translocase 100.0 4.6E-95 1.6E-99 780.8 40.3 414 149-577 7-431 (434)
2 3dl8_G Preprotein translocase 100.0 1.5E-95 5E-100 784.7 18.0 414 148-576 6-429 (429)
3 3j01_A Preprotein translocase 100.0 2.4E-94 8.3E-99 775.9 11.9 408 153-576 9-428 (435)
4 3din_C Preprotein translocase 100.0 1.2E-93 4.1E-98 769.8 15.1 406 148-576 6-424 (431)
5 1rh5_A Preprotein translocase 100.0 5.9E-90 2E-94 742.1 30.7 401 136-576 2-432 (436)
6 3mp7_A Preprotein translocase 100.0 1.7E-89 5.7E-94 746.0 18.6 409 134-576 3-465 (482)
7 2ww9_A SEC sixty-one protein h 100.0 2.7E-86 9.1E-91 722.1 17.8 403 131-568 3-474 (490)
8 2wwb_A Protein transport prote 100.0 1E-82 3.5E-87 692.3 26.2 397 132-566 3-466 (476)
9 2nsc_A Trigger factor, TF; cha 42.3 15 0.00051 31.6 2.9 27 482-509 33-59 (109)
10 1p9y_A Trigger factor, TF; alp 35.0 23 0.00078 31.0 2.9 23 488-510 41-63 (121)
11 2d3o_1 Trigger factor, TF; rib 28.5 19 0.00065 31.0 1.3 37 479-516 29-65 (112)
12 3mp7_A Preprotein translocase 20.9 1.2E+02 0.004 32.9 6.0 30 307-338 424-453 (482)
No 1
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=4.6e-95 Score=780.81 Aligned_cols=414 Identities=27% Similarity=0.452 Sum_probs=338.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCcccc-cccc--ccccccchhhcCchhHHHHHH
Q 008056 149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDE-LGDF--GAELKLSFFQLGISPQIVASI 225 (579)
Q Consensus 149 ~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~-l~~~--ga~~~~SLFsLGI~PyItASI 225 (579)
..++++|+|+|++||++++++||+|++||+||+|.++.++ ..+..+++++. ++.+ |+++++|+|+|||+|||||||
T Consensus 7 ~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~-~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASI 85 (434)
T 2zjs_Y 7 SALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQE-FLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAI 85 (434)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHH-HHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHH
T ss_pred hHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHH-HHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHH
Confidence 3567899999999999999999999999999999987643 22221223443 3333 478999999999999999999
Q ss_pred HHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhc-cc-cc-cccc--cchhHHHHHHHHHHHHH
Q 008056 226 LMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-PY-SI-YAAS--HSVKHVMVTAFLLVCGA 300 (579)
Q Consensus 226 I~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~-~~-~~-~~~~--~~~~~~l~ivl~LvaGa 300 (579)
|||||+.++|.++|++||||+||+|+|+||||+|+++|++||++++.... .. +. ...+ ++..+.++++++|++|+
T Consensus 86 I~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt 165 (434)
T 2zjs_Y 86 IMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGI 165 (434)
T ss_dssp HHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975421 21 21 1122 34456778999999999
Q ss_pred HHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEe
Q 008056 301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQ 380 (579)
Q Consensus 301 ~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIq 380 (579)
+++|||||+|||||+|||+|++|++||++++|+.+.+.++....+..++. .++.++++++++++++|++|+++||||||
T Consensus 166 ~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~vi~~vV~~~~~~rrIPvq 244 (434)
T 2zjs_Y 166 ALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLV-AFLFFLAFIVLAFAGMAAVQQAERRIPVQ 244 (434)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHH-HHHHHHHHHHHHHHHHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHH-HHHHHHHHHHHHHHHHHHheeeEEEEeeh
Confidence 99999999999999999999999999999999999887765443333443 23334555566677889999999999999
Q ss_pred eccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhC-ChhHHHHHHHcCCCCCCCCcchHHHH
Q 008056 381 YYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVYYT 459 (579)
Q Consensus 381 y~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~-~~~~~~i~~~l~~~~s~~~~~~iy~i 459 (579)
|+++. .+++ .++++++|+|+|+|+||+||+|||++++++|+++++++. ++|..++.++++|+ .|+|.+
T Consensus 245 yakr~--~gr~---~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------~~~y~~ 313 (434)
T 2zjs_Y 245 YARKV--VGGR---VYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------RPSGLF 313 (434)
T ss_dssp ECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------SHHHHH
T ss_pred hhhhh--ccCc---ccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------ChHHHH
Confidence 99753 1222 456789999999999999999999999999999999764 45656677888875 389999
Q ss_pred HHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccC
Q 008056 460 IYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRIN 537 (579)
Q Consensus 460 iy~~~ii~Fs~f~i--~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~ 537 (579)
+|++++++|||||. +.||||+||||||+|++|||+|||++|++||+|+++|+|++||+|++++|++|++++.. .++.
T Consensus 314 ~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~-~~~~ 392 (434)
T 2zjs_Y 314 IEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNL-TGIH 392 (434)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCcc
Confidence 99999999999994 46899999999999999999999999999999999999999999999999999998654 2221
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 008056 538 EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY 577 (579)
Q Consensus 538 ~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~ 577 (579)
++.+||||+||+||+++|++||+|+++.+++|+++++|.
T Consensus 393 -~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~Y~~~~~~~ 431 (434)
T 2zjs_Y 393 -SIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRG 431 (434)
T ss_dssp -CGGGSSHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 577899999999999999999999999999999999873
No 2
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-95 Score=784.74 Aligned_cols=414 Identities=30% Similarity=0.534 Sum_probs=336.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCcccccccc--ccccccchhhcCchhHHHHHH
Q 008056 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAELKLSFFQLGISPQIVASI 225 (579)
Q Consensus 148 ~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~--ga~~~~SLFsLGI~PyItASI 225 (579)
...++++|+|+|++||++++++||+|+|||+||+|.++.++.+.....+.+.+++.+ |+++++|+|+|||+|||||||
T Consensus 6 ~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItAsI 85 (429)
T 3dl8_G 6 KALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISASI 85 (429)
T ss_dssp --CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHHHH
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHHHH
Confidence 345678999999999999999999999999999999876331111111223333334 457999999999999999999
Q ss_pred HHHHHHhHhhhHHHhhh-cChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccc-----cccccccchhHHHHHHHHHHHH
Q 008056 226 LMQVLCHIVPSLVQLRK-EGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPY-----SIYAASHSVKHVMVTAFLLVCG 299 (579)
Q Consensus 226 I~QLL~~~iP~L~kl~k-eg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~-----~~~~~~~~~~~~l~ivl~LvaG 299 (579)
+||||+.++|+++|++| |||+||+|+|++|||+|+++|++||++++...... .....+++..+.++++++|++|
T Consensus 86 I~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG 165 (429)
T 3dl8_G 86 MMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAG 165 (429)
T ss_dssp HHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999987543210 0111234455678899999999
Q ss_pred HHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEE
Q 008056 300 AMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKL 379 (579)
Q Consensus 300 a~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPI 379 (579)
++++|||||+|||||+|||+|++|++||++++|+++.+.+.....++.++.+. +..++++++++++++++|+++|||||
T Consensus 166 t~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~g~~~~~~~-l~~l~~~l~vi~~vV~~~~~~rrIPv 244 (429)
T 3dl8_G 166 TMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTL-LLIIALIIAIIVGIVYVQEAERRIPI 244 (429)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHH-HHHHHHHHHHHHHHTCSCCCCCCCCC
T ss_pred HHHHHHHHHHHhhcCcCcchHHHHHHHHHHHHHHHHHhHHHHhcCCcchHHHH-HHHHHHHHHHHHHHHHheeeEEEEEE
Confidence 99999999999999999999999999999999998765432222233344443 33455566667789999999999999
Q ss_pred eeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCChhHHHHHHHcCCCCCCCCcchHHHH
Q 008056 380 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYT 459 (579)
Q Consensus 380 qy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~~~~~i~~~l~~~~s~~~~~~iy~i 459 (579)
||+|+.. ++| .++++++|+|+|+||||+||+|||++++++|++++++++++|..++.++++|. .|+|.+
T Consensus 245 qyakr~~--g~~---~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~l~~~------~~~y~~ 313 (429)
T 3dl8_G 245 QYPGRQV--GRQ---LYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPG------AIFYNF 313 (429)
T ss_dssp BCSSSCB--CCC---CCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCCCCTTTTTTTTT------HHHHHH
T ss_pred EEchhhc--ccc---ccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHcCCC------chHHHH
Confidence 9997532 222 45678999999999999999999999999999999987655544455556553 489999
Q ss_pred HHHHHHHHHHHHHhc--cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccC
Q 008056 460 IYAFFVFLFNIFDIA--NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRIN 537 (579)
Q Consensus 460 iy~~~ii~Fs~f~i~--~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~ 537 (579)
+|++++++|||||.. .||||+||||||+|++|||+|||++|++||+|+++|+|++||+|++++|++|++++..+ +
T Consensus 314 ~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~---g 390 (429)
T 3dl8_G 314 LYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---N 390 (429)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---C
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---C
Confidence 999999999999944 58999999999999999999999999999999999999999999999999999987532 3
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008056 538 EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 576 (579)
Q Consensus 538 ~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 576 (579)
.++.+||||+||+||+++|++||+|+++.+++|+++++|
T Consensus 391 ~~~~~gGTslLI~Vgv~l~~~~qi~s~l~~~~Y~g~~~~ 429 (429)
T 3dl8_G 391 IPFYFGGTTALIVVGVALDTFRQIETYLIQKKYKSYVRR 429 (429)
T ss_dssp CSCCCSTHHHHHHHHHHHHHHHHHHHHCCCCCTTCSCC-
T ss_pred CCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346689999999999999999999999999999998875
No 3
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=2.4e-94 Score=775.93 Aligned_cols=408 Identities=28% Similarity=0.490 Sum_probs=335.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccc-c--ccccccchhhcCchhHHHHHHHHHH
Q 008056 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGD-F--GAELKLSFFQLGISPQIVASILMQV 229 (579)
Q Consensus 153 ~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~-~--ga~~~~SLFsLGI~PyItASII~QL 229 (579)
.+|+|+|++||++++++||+|++||+||+|.++..+ +.+...+++..+.+ + |+++++|+|+|||+|||||||+|||
T Consensus 9 ~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~-~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QL 87 (435)
T 3j01_A 9 LGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAK-LLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQL 87 (435)
T ss_dssp SCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCS-SCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHH-HHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHH
Confidence 379999999999999999999999999999987643 21211222333222 3 4679999999999999999999999
Q ss_pred HHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-cc--ccccccchhHHHHHHHHHHHHHHHHHHH
Q 008056 230 LCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLP-YS--IYAASHSVKHVMVTAFLLVCGAMTMSWI 306 (579)
Q Consensus 230 L~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~-~~--~~~~~~~~~~~l~ivl~LvaGa~il~WL 306 (579)
|+.++|++++++||||+||+|+|++|||+|+++|++||++++..... +. ....+++..+.++++++|++|++++|||
T Consensus 88 L~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL 167 (435)
T 3j01_A 88 LTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWL 167 (435)
T ss_dssp HHHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998754321 10 1111233445678899999999999999
Q ss_pred HhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccc
Q 008056 307 CDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 386 (579)
Q Consensus 307 ~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~ 386 (579)
||+|||||+|||+|++|++||++++|+++.+.+.....+..+++ .++..++++++++++++++++++|||||||+|+..
T Consensus 168 ~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~ 246 (435)
T 3j01_A 168 GEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL-VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQ 246 (435)
T ss_dssp HHHSTTSCCSSSHHHHHHHHHHHHSSTTSSSCCCSSSSTTSSSH-HHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCS
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHHHHHHHHhheeEEEEEEEehhhhc
Confidence 99999999999999999999999999987544332222333333 23334555666677889999999999999997532
Q ss_pred cccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCCh----hHHHHHHHcCCCCCCCCcchHHHHHHH
Q 008056 387 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP----FWQHVKEILNPETSVGARPWVYYTIYA 462 (579)
Q Consensus 387 ~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~----~~~~i~~~l~~~~s~~~~~~iy~iiy~ 462 (579)
+++ .++++++|+|+|+||||+||+|||++++++|+++++++++. |..++.++++| ..|+|.++|+
T Consensus 247 --g~~---~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~y~ 315 (435)
T 3j01_A 247 --GRR---VYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQP------GQPLYVLLYA 315 (435)
T ss_dssp --SCC---CCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSCCCSSCCSSSSCCCCS------SGGGGTHHHH
T ss_pred --ccc---ccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHcCC------CCcHHHHHHH
Confidence 222 45678999999999999999999999999999999976421 32233334443 2478999999
Q ss_pred HHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcc
Q 008056 463 FFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGF 540 (579)
Q Consensus 463 ~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~ 540 (579)
+++++|+||| +..||||+||||||+|++|||+|||++|++||+|+++|+|++||+|++++|++|++++... +.++
T Consensus 316 ~lii~F~~fyt~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~---~~~~ 392 (435)
T 3j01_A 316 SAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAM---KVPF 392 (435)
T ss_dssp HHHHHHHHHHHHHSSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCC---SSSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCe
Confidence 9999999999 5579999999999999999999999999999999999999999999999999999987542 2345
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008056 541 SIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 576 (579)
Q Consensus 541 ~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 576 (579)
.+||||+||+||+++|++||+|+++.+++|++++++
T Consensus 393 ~~gGTslLI~VgV~ldt~~qi~s~l~~~~Y~g~~~~ 428 (435)
T 3j01_A 393 YFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKK 428 (435)
T ss_dssp SSCCHHHHHTHHHHHHHHHHHHHHTSCCCCCCSCSC
T ss_pred ecccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999875
No 4
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.2e-93 Score=769.77 Aligned_cols=406 Identities=25% Similarity=0.496 Sum_probs=330.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhh---c--cCcccccccc--ccccccchhhcCchhH
Q 008056 148 AESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSF---V--SGSVDELGDF--GAELKLSFFQLGISPQ 220 (579)
Q Consensus 148 ~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~---~--~g~~~~l~~~--ga~~~~SLFsLGI~Py 220 (579)
...++++|+|+|++||++++++||+|++||+||+|.+++++.+.+. . .+.+.+++.+ |+++++|+|+|||+||
T Consensus 6 ~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~Py 85 (431)
T 3din_C 6 KNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTPY 85 (431)
T ss_dssp --CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHHHH
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhHHH
Confidence 4467789999999999999999999999999999998753311110 0 1123233333 4569999999999999
Q ss_pred HHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc---ccccccc-hhHHHHHHHHH
Q 008056 221 IVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS---IYAASHS-VKHVMVTAFLL 296 (579)
Q Consensus 221 ItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~---~~~~~~~-~~~~l~ivl~L 296 (579)
|||||+||||+.++|+++|++||||+||+|+|++|||+|+++|++||++++.... ++ ....+++ ..+.++++++|
T Consensus 86 ItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vl~L 164 (431)
T 3din_C 86 ITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLA-RSNPDMVAPGVNVLQFTVLSTMSM 164 (431)
T ss_dssp HHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSSCCCCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCccccccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999874332 21 1101233 45678899999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEE
Q 008056 297 VCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRK 376 (579)
Q Consensus 297 vaGa~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rr 376 (579)
++|++++|||||+|||||+|||+|++|++||++++|+++.+.+. ++.++.+. +..+++++++++++|++|+++||
T Consensus 165 ~aGt~~lmwL~E~It~~GiGnGiSliI~~gI~~~lp~~~~~~~~----~~~~~~~~-l~~l~~~l~vi~~vV~~~~~~rr 239 (431)
T 3din_C 165 LAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL----GGLNLLEW-IFLIAVALITIFGIILVQQAERR 239 (431)
T ss_dssp HHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS----CCSCTHHH-HHHHHHHHHHHHHHTTTCCBCCC
T ss_pred HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHhc----ccccHHHH-HHHHHHHHHHHHHHHhheeeEEE
Confidence 99999999999999999999999999999999999998754331 23344443 33455566667789999999999
Q ss_pred EEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCChhHHHHHHHcCCCCCCCCcchH
Q 008056 377 VKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWV 456 (579)
Q Consensus 377 IPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~~~~~i~~~l~~~~s~~~~~~i 456 (579)
|||||+|+. .++| .++++++|+|+|+||||+||+|||++++++|+++++++++.| ..++++| ..|+
T Consensus 240 IPvqyakr~--~g~~---~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~~---~~~~~~~------~~~~ 305 (431)
T 3din_C 240 ITIQYARRV--TGRR---VYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNET---LKNLFRA------GGFL 305 (431)
T ss_dssp CCCCBTTTB--CCCC---CCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCC---CCCCSST------THHH
T ss_pred EEEEechhh--cccc---ccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcchHH---HHHHcCC------CcHH
Confidence 999999753 2222 466789999999999999999999999999999998764322 1123333 2478
Q ss_pred HHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhh
Q 008056 457 YYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLR 534 (579)
Q Consensus 457 y~iiy~~~ii~Fs~f~i--~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~ 534 (579)
|.++|++++++|||||. +.||||+||||||+|++|||+|||++|++||+|+++|+|++||+|++++|++|++++..+
T Consensus 306 y~~~y~~lii~Fs~fy~~i~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~- 384 (431)
T 3din_C 306 YLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAI- 384 (431)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999994 458999999999999999999999999999999999999999999999999999987642
Q ss_pred ccCCcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008056 535 RINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 576 (579)
Q Consensus 535 ~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 576 (579)
+.++.+||||+||+||+++|++||+|+++.+++|++++++
T Consensus 385 --g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~Y~g~~~~ 424 (431)
T 3din_C 385 --KVNVWIGGTSALIAVGVALDIIQQMETHMVMRHYEGFIKK 424 (431)
T ss_dssp --CCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTCC-
T ss_pred --CCCccccchhhhhhHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 2336689999999999999999999999999999999875
No 5
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=5.9e-90 Score=742.07 Aligned_cols=401 Identities=15% Similarity=0.166 Sum_probs=316.2
Q ss_pred HHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccccchhh
Q 008056 136 NFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214 (579)
Q Consensus 136 ~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLFs 214 (579)
|.+|+.... ||+++|++++|+|+|++||++++++||+|+|||+||+|.++. + .+.+++.++|.+++|+|+
T Consensus 2 ~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-~--------~~~~~~~~~a~~~~sifa 72 (436)
T 1rh5_A 2 KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-A--------IFEFWQTITASRIGTLIT 72 (436)
T ss_dssp CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-S--------CCTTHHHHHTCCTTBTTT
T ss_pred chhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-H--------HHHHHHHhhccccchHHH
Confidence 456665555 999999999999999999999999999999999999999765 2 122344456788999999
Q ss_pred cCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHH
Q 008056 215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAF 294 (579)
Q Consensus 215 LGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~ivl 294 (579)
|||+|||||||+||||++. ++.+++||||+||+|+|++|||+|+++|++||++++... .+ . +.+..+.+++++
T Consensus 73 LGI~PyItAsII~QLL~g~--~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g-~~---~-~~~~~~~~~~vl 145 (436)
T 1rh5_A 73 LGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAG-AF---G-ILTPLLAFLVII 145 (436)
T ss_dssp TTTHHHHHHHHHHHHHHHH--TTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS---C-CCCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhhC--ceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc---c-CCchHHHHHHHH
Confidence 9999999999999999653 344889999999999999999999999999999997431 11 1 234456778999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHH-------HHHhhhcCCcccHHHHHHHHHHHHHHHHHH
Q 008056 295 LLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYK-------MLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367 (579)
Q Consensus 295 ~LvaGa~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~-------~~~~~~~~~~~~~~~ll~il~i~llvi~~i 367 (579)
+|++|++++|||||+|||||+|||+|++|++||++++|+++++ .++....+..++. . +..+++++++++++
T Consensus 146 ~L~~Gt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~lp~~~~~~~G~i~~~~~~~~~~~~~~~-~-l~~l~~~l~v~~~v 223 (436)
T 1rh5_A 146 QIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIE-Y-IAPIIGTIIVFLMV 223 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGG-G-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHhcccchHH-H-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877 5544333322222 2 23344556667778
Q ss_pred HhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhC---ChhH-------
Q 008056 368 VVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG---SPFW------- 437 (579)
Q Consensus 368 V~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~---~~~~------- 437 (579)
+++|+++|||||||++. +++++|+|+|+|++|+||+|||++++++|++++++++ ..|.
T Consensus 224 V~~~~~~rrIPvqyak~------------~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~g~~~~~~ 291 (436)
T 1rh5_A 224 VYAECMRVEIPLAHGRI------------KGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGR 291 (436)
T ss_dssp HHHTTCEEEEECCCSSS------------TTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSS
T ss_pred HhhcceEEEEEEEeccc------------CCccceeeeecccccchHHHHHHHHHHHHHHHHHHhcccCcchhhhccccc
Confidence 99999999999999962 2578999999999999999999999999999999863 1232
Q ss_pred --HHHHHHcCCCCCCC----C-cc-hHHHHHHHHHHHHHHHHH--h-ccChHHHHHHHHHcCCccccccCChh-hHHHHH
Q 008056 438 --QHVKEILNPETSVG----A-RP-WVYYTIYAFFVFLFNIFD--I-ANLPKEIADYLNKMGARIPNVKPGKA-TIEYLT 505 (579)
Q Consensus 438 --~~i~~~l~~~~s~~----~-~~-~iy~iiy~~~ii~Fs~f~--i-~~~PkdiAe~Lkk~G~~IpGvRPG~~-T~~YL~ 505 (579)
+++.+|++|+.+.. . .. ++|.++|++++++||||| + ..||||+||||||+|++|||+|||++ |++||+
T Consensus 292 ~~~gl~yyl~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~ 371 (436)
T 1rh5_A 292 AVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLK 371 (436)
T ss_dssp BSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHH
T ss_pred ccccchhhcCChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHH
Confidence 24567777754321 1 12 689999999999999999 4 46899999999999999999999999 799999
Q ss_pred HhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 008056 506 KIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR 576 (579)
Q Consensus 506 kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~ 576 (579)
|+++|+|++||+|++++|++|++++. ++ ||||+||+||+++|++||+++++.+++|. .+||
T Consensus 372 ~vi~rit~~Ga~~l~~ia~lp~~l~~----~~-----gGTslLI~VgV~~~~~~qi~~~~~~~~Y~-~l~~ 432 (436)
T 1rh5_A 372 RYIPPLTVMSSAFVGFLATIANFIGA----LG-----GGTGVLLTVSIVYRMYEQLLRERTSELHP-AIAK 432 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC----TT-----CSHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hc-----CchhhhhHHHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 99999999999999999999999752 12 89999999999999999999999999998 6665
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=1.7e-89 Score=745.96 Aligned_cols=409 Identities=18% Similarity=0.234 Sum_probs=270.7
Q ss_pred hhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccccch
Q 008056 134 FLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212 (579)
Q Consensus 134 ~~~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SL 212 (579)
|+|.+|++... ||+++|++++|+|+|++||++++++||+|++||+||+|.+.. + .+.+++.++|.+++|+
T Consensus 3 ~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~~-~--------~~~~l~~~~Gg~~~Si 73 (482)
T 3mp7_A 3 ARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERIQ-D--------YFQFLRVVLAGRNGSI 73 (482)
T ss_dssp -----------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSCC-C--------SCSSTTTTTCSCTTBT
T ss_pred HHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCcccc-c--------HHHHHHHhcCCCcccH
Confidence 66888887776 999999999999999999999999999999999999998743 1 2333444545579999
Q ss_pred hhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHH
Q 008056 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVT 292 (579)
Q Consensus 213 FsLGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~i 292 (579)
|+|||+||||||||||||+.. ++++++|||++||+|+|++|||+|+++|++||++++. ...++.....++....+++
T Consensus 74 faLGI~PyITASII~QLL~~~--~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~-~~~~~~~~~~~~~~~~~~i 150 (482)
T 3mp7_A 74 LTLGIGPIVTAGIILQLLVGS--EIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWIL-GGAFGRVGVDVTYAIAVLM 150 (482)
T ss_dssp TSSTTHHHHHHHHHTTC-------------------------CHHHHHHHHHHHHHHHHH-SSSSSCC------CTHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHhc--cHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccccccchHHHHHH
Confidence 999999999999999999976 8999999999999999999999999999999999974 3333221101233457889
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhc--------CCcccHHHH-----------
Q 008056 293 AFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLG--------SSVRWWPFM----------- 353 (579)
Q Consensus 293 vl~LvaGa~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~--------~~~~~~~~l----------- 353 (579)
+++|++|++++|||||+|||||+|||+|++|++||++++|+++++.+....+ ...++.+.+
T Consensus 151 vl~L~aGt~~lmwL~E~It~~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~l~~ 230 (482)
T 3mp7_A 151 ILQLAMGGIVLIILDELVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWG 230 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhcchhhH
Confidence 9999999999999999999999999999999999999999997654311000 001221111
Q ss_pred ----------HHHHHHHHHHHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHH
Q 008056 354 ----------LGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLA 423 (579)
Q Consensus 354 ----------l~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~ 423 (579)
+..+++++++++++|++|+++|||||||+|++ +++|+|+|+||||+||+|||+++++
T Consensus 231 ~~~~~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-------------~~~~iPiKln~aGviPiIfassll~ 297 (482)
T 3mp7_A 231 AIYRGGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-------------VRGSYPIRFLYVSNIPIILTFALYA 297 (482)
T ss_dssp SCCCSSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------------------CEECSSSSTTHHHHHHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-------------ccceeeEeecccCchHHHHHHHHHH
Confidence 22344555567778999999999999998631 4699999999999999999999999
Q ss_pred hHHHHHHHhCC---hhH-----------HHHHHHcCCCCCCCC----c--chHHHHHHHHHHHHHHHHH--h-ccChHHH
Q 008056 424 FPSILASILGS---PFW-----------QHVKEILNPETSVGA----R--PWVYYTIYAFFVFLFNIFD--I-ANLPKEI 480 (579)
Q Consensus 424 ~P~~i~~~l~~---~~~-----------~~i~~~l~~~~s~~~----~--~~iy~iiy~~~ii~Fs~f~--i-~~~Pkdi 480 (579)
+|+++++++.+ +|. .++.+|++|+.++.. + .++|.++|++++++||||| + ..||||+
T Consensus 298 ~p~~i~~~~~~~~~~~l~~~~~~~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~di 377 (482)
T 3mp7_A 298 NIQLWARVLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSI 377 (482)
T ss_dssp HHHHHHHHHHTTSCCSSBCCCCTTSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGC
T ss_pred HHHHHHHHhhhccchhhhhhcccccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999987632 121 134567777654421 1 1368899999999999999 5 4689999
Q ss_pred HHHHHHcCCccccccCChh-hHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHH
Q 008056 481 ADYLNKMGARIPNVKPGKA-TIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 559 (579)
Q Consensus 481 Ae~Lkk~G~~IpGvRPG~~-T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~ 559 (579)
||||||+|++|||+|||++ |+|||+|+++|+|++||+|++++|++|++++.. + ||||+||+||+++|++|
T Consensus 378 A~nlkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~L~~iavlp~~l~~~----g-----gGTslLI~VgV~~~~~~ 448 (482)
T 3mp7_A 378 ARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGAL----G-----TGTGILLTVGILYRFYE 448 (482)
T ss_dssp CC--------CCTTTTTTSTTCC------CTHHHHHHHHHHHHHHHHHHHTCS----S-----CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc----C-----CceeeeeeHHHHHHHHH
Confidence 9999999999999999997 799999999999999999999999999998631 2 89999999999999999
Q ss_pred HHHHHHhhHHHHHHHhh
Q 008056 560 SYQAYNVMPSLSKALRR 576 (579)
Q Consensus 560 qi~a~~~~~~y~~~l~~ 576 (579)
|+++++.+++|..+-|-
T Consensus 449 qi~s~~~~~~Y~~l~~~ 465 (482)
T 3mp7_A 449 EIAREQITEMFPALRKL 465 (482)
T ss_dssp HHHHHHHHHSHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 99999999999965543
No 7
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=2.7e-86 Score=722.06 Aligned_cols=403 Identities=14% Similarity=0.168 Sum_probs=327.8
Q ss_pred chhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccc
Q 008056 131 KNRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELK 209 (579)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~ 209 (579)
..||+|.+|+.... ||+++|.+++|+|+|++||++++++||+ +|||+||+|.++.. +. .+.+.+++.++|.++
T Consensus 3 ~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~----~~-~~~~~~~~~~~a~~~ 76 (490)
T 2ww9_A 3 GFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTP----NV-NDPIYFLRGVFGCEP 76 (490)
T ss_dssp CSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTT----CS-SCCCTTTHHHHTCCS
T ss_pred cchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHh----cc-cCHHHHHHHHHcccc
Confidence 35788989988777 9999999999999999999999999999 99999999987431 11 123445555668889
Q ss_pred cchhhcCchhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHH
Q 008056 210 LSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHV 289 (579)
Q Consensus 210 ~SLFsLGI~PyItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~ 289 (579)
+|+|+|||+||||||||||||++. ++.+++||||+||+|+|++|||+|+++|++||++++... .++ .+.+..+.
T Consensus 77 ~sifaLGI~PyItASII~QLL~g~--~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~-~~~---~~~~~~~~ 150 (490)
T 2ww9_A 77 RTLLEFGLFPNISSGLILQLLAGL--KVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAG-YFG---DDLSVVQI 150 (490)
T ss_dssp SSTTSSTTHHHHHHHHHHHHHHHH--TSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSS---CCCSTTHH
T ss_pred cHHHHHhhHHHHHHHHHHHHHhhC--ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc---CCccHHHH
Confidence 999999999999999999999653 223388999999999999999999999999999987533 332 23344567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-cCCCCcchHHhHHhHhhHHHHHHH--------------------HHHHhh--hc--
Q 008056 290 MVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLY--------------------KMLSQL--LG-- 344 (579)
Q Consensus 290 l~ivl~LvaGa~il~WL~ElItk-~GIGnG~SLiI~~gIis~lp~~l~--------------------~~~~~~--~~-- 344 (579)
++++++|++|++++|||||+||| ||+|||+||+|++|||+++|++++ +.+... ..
T Consensus 151 ~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~ 230 (490)
T 2ww9_A 151 GLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKT 230 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccc
Confidence 78999999999999999999999 999999999999999999999875 333322 11
Q ss_pred --CCc-ccH-----HHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHH
Q 008056 345 --SSV-RWW-----PFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVL 416 (579)
Q Consensus 345 --~~~-~~~-----~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPII 416 (579)
+.. ++. |.+ ..+++++++++++|++|+++|||||||+|+ +++++|+|+|+||+|+||+|
T Consensus 231 ~~~~l~~~~~r~~lp~l-~~l~~~l~vi~~vV~~q~~~rrIPIqyak~------------~g~~s~lPlKln~aGviPiI 297 (490)
T 2ww9_A 231 FIGGIISAFNRDYLPNL-TTTIIVLAIAIIVCYLQSVRVELPIRSTRA------------RGTNNVYPIKLLYTGCLSVL 297 (490)
T ss_dssp CCCSCCCCCSSSSCCSH-HHHHHHHHHHHHHHHHTTCCEECCCBCSSS------------SSBCCCCEECHHHHTHHHHH
T ss_pred cccchhhHHhhccccHH-HHHHHHHHHHHHHheeeeeEEEEEEEEccc------------CCcCceeeeEeccccchHHH
Confidence 111 111 122 234455556677899999999999999964 15789999999999999999
Q ss_pred HHHHHHHhHHHHHH----HhC----C--------hhH---------HHHHHHcCCCCCCCC--cc-hH----HHHHHHHH
Q 008056 417 TTTYLLAFPSILAS----ILG----S--------PFW---------QHVKEILNPETSVGA--RP-WV----YYTIYAFF 464 (579)
Q Consensus 417 fAssLl~~P~~i~~----~l~----~--------~~~---------~~i~~~l~~~~s~~~--~~-~i----y~iiy~~~ 464 (579)
||++++++|+++++ ++. + .|. .++.+|++|+.++.. .. |+ |.++|+++
T Consensus 298 Fassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~l 377 (490)
T 2ww9_A 298 FSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVT 377 (490)
T ss_dssp HHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhccccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHH
Confidence 99999999988877 541 1 121 234455666544321 12 45 88899999
Q ss_pred HHHHHHHH--hc-cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCccc
Q 008056 465 VFLFNIFD--IA-NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFS 541 (579)
Q Consensus 465 ii~Fs~f~--i~-~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~ 541 (579)
+++||||| ++ .||||+||||||+|++|||+||| +|++||+|+++|+|++||+|++++|++|++++. ++
T Consensus 378 ii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG-~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~~----~g---- 448 (490)
T 2ww9_A 378 GIWFADKWQAISGSSARDVALEFKDQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGL----KG---- 448 (490)
T ss_dssp HHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----CS----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----
Confidence 99999999 45 68999999999999999999999 999999999999999999999999999999742 22
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhH
Q 008056 542 IGFTSVLIIVGSIIELRRSYQAYNVMP 568 (579)
Q Consensus 542 ~ggTsLLIlVgvil~~~~qi~a~~~~~ 568 (579)
||||+||+||+++|++||++++.+..
T Consensus 449 -gGTslLI~VgV~~~~~~qi~~e~~~~ 474 (490)
T 2ww9_A 449 -KAAGIVVGIAGGFSLLEVITIEYQQS 474 (490)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999988766
No 8
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1e-82 Score=692.30 Aligned_cols=397 Identities=15% Similarity=0.188 Sum_probs=324.4
Q ss_pred hhhhHHhhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCcccccccccccccc
Q 008056 132 NRFLNFIRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKL 210 (579)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~ 210 (579)
.||+|.+|+.... ||+++|.+++++|+|++||++++++||+|+|||+||+|.++..+ ++.++.+..|.+++
T Consensus 3 ~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~--------~~~~~~~~fa~~~~ 74 (476)
T 2wwb_A 3 IKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD--------PFYWMRVILASNRG 74 (476)
T ss_dssp SCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSC--------CCHHHHHHHCSSCS
T ss_pred chHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccc--------cHHHHHHHHccccc
Confidence 5788999977766 99999999999999999999999999999999999999875322 35555564578899
Q ss_pred chhhcCchhHHHHHHHHHHHH--hHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhH
Q 008056 211 SFFQLGISPQIVASILMQVLC--HIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKH 288 (579)
Q Consensus 211 SLFsLGI~PyItASII~QLL~--~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~ 288 (579)
|+|+|||+||||||||||||+ .++|.+++++ ||+|+|++|||+|+++|++||++++.... ++.. .+.+..+
T Consensus 75 SifaLGI~PyItASII~QLL~g~~iip~~~~l~-----gR~k~~~~tR~lti~la~iQa~~~v~~g~-~~~~-~~~~~~~ 147 (476)
T 2wwb_A 75 TLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-----DRALFNGAQKLFGMIITIGQSIVYVMTGM-YGDP-SEMGAGI 147 (476)
T ss_dssp SSCSSSSTHHHHHHHHHHHHHHHCCCSCCSSSS-----CSSCHHHHHHHHHHHHHHHHHHHHHHHTS-SCCS-SCSCHHH
T ss_pred cHHHHhhHHHHHHHHHHHHHHhCCccccchhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-cCccHHH
Confidence 999999999999999999995 4688888775 89999999999999999999999865333 3321 1234456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-cCCCCcchHHhHHhHhhHHHHHHHHH------------------HHhh--hcC--
Q 008056 289 VMVTAFLLVCGAMTMSWICDTISE-SGFGQGSSLIICVGILTGYTETLYKM------------------LSQL--LGS-- 345 (579)
Q Consensus 289 ~l~ivl~LvaGa~il~WL~ElItk-~GIGnG~SLiI~~gIis~lp~~l~~~------------------~~~~--~~~-- 345 (579)
.++++++|++|++++|||||+||| ||+|||+|++|++|||+++.|+.++. ++.. ..+
T Consensus 148 ~~~ivl~L~~Gt~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~ 227 (476)
T 2wwb_A 148 CLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKV 227 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccc
Confidence 778999999999999999999999 99999999999999999995443321 1111 000
Q ss_pred -C-----c-ccHHHHHHHHHHHHHHHHHHHhhccceEEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHH
Q 008056 346 -S-----V-RWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTT 418 (579)
Q Consensus 346 -~-----~-~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfA 418 (579)
+ . +-.+.++ .+++++++++++|++|+++|||||||+|. +++++|+|+|+||+|+||+|||
T Consensus 228 ~~l~~~~~r~~l~~~~-~ll~~~~v~~~vV~~q~~~rrIPv~yak~------------~g~~~~~PiKln~aGviPiIfa 294 (476)
T 2wwb_A 228 RALREAFYRQNLPNLM-NLIATIFVFAVVIYFQGFRVDLPIKSARY------------RGQYNTYPIKLFYTSNIPIILQ 294 (476)
T ss_dssp SSSSSCSSSSSHHHHH-HHHHHHHHHHHHHHHHHCCBCCCCCBCSS------------SSBCSCCCBCTTTSSHHHHHHH
T ss_pred cchhhhhhccccchHH-HHHHHHHHHhheeEEEEEEEEEEEEeccc------------CCccceeeeeeccccchHHHHH
Confidence 0 0 1122333 23334556777899999999999999962 1577999999999999999999
Q ss_pred HHHHHhHHHHHHHh----C-Ch-------hHHH-------------HHHHcCCCCCCCC--cchHHHHHHHHHHHHHHHH
Q 008056 419 TYLLAFPSILASIL----G-SP-------FWQH-------------VKEILNPETSVGA--RPWVYYTIYAFFVFLFNIF 471 (579)
Q Consensus 419 ssLl~~P~~i~~~l----~-~~-------~~~~-------------i~~~l~~~~s~~~--~~~iy~iiy~~~ii~Fs~f 471 (579)
++++++|+++++++ + +. |... +.+|++|+.++.. .+|+|.++|++++++|++|
T Consensus 295 ssll~~p~~i~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~f 374 (476)
T 2wwb_A 295 SALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAF 374 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHH
Confidence 99999999999886 2 21 2211 6778888655432 3578999999999988887
Q ss_pred Hh----c---cChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccCCcccccc
Q 008056 472 DI----A---NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 544 (579)
Q Consensus 472 ~i----~---~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~~~~~~gg 544 (579)
|. + .||||+||||||+|++|||+|| ++|+|||+|+++|+|++||+|++++|++|++++.+ +||
T Consensus 375 yt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~---------~gG 444 (476)
T 2wwb_A 375 FSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAI---------GSG 444 (476)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS---------SCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cch
Confidence 63 3 4899999999999999999999 89999999999999999999999999999997521 489
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 008056 545 TSVLIIVGSIIELRRSYQAYNV 566 (579)
Q Consensus 545 TsLLIlVgvil~~~~qi~a~~~ 566 (579)
||+||+||++++++||++.+..
T Consensus 445 TslLI~Vgv~~~~~e~i~~e~~ 466 (476)
T 2wwb_A 445 TGILLAVTIIYQYFEIFVKEQS 466 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=42.32 E-value=15 Score=31.56 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred HHHHHcCCccccccCChhhHHHHHHhhh
Q 008056 482 DYLNKMGARIPNVKPGKATIEYLTKIQA 509 (579)
Q Consensus 482 e~Lkk~G~~IpGvRPG~~T~~YL~kvi~ 509 (579)
+.++| ...|||+|||+.-...+.+...
T Consensus 33 ~~~~k-~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 33 RYLNQ-RVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp HHHHT-TCCCTTSCTTCCCHHHHHHHHG
T ss_pred HHHhc-cCCCCCcCCCCCCHHHHHHHHh
Confidence 34433 4799999999988887777665
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=34.96 E-value=23 Score=31.01 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.6
Q ss_pred CCccccccCChhhHHHHHHhhhh
Q 008056 488 GARIPNVKPGKATIEYLTKIQAS 510 (579)
Q Consensus 488 G~~IpGvRPG~~T~~YL~kvi~r 510 (579)
...|||+|||+.-...+.+....
T Consensus 41 ~v~ipGFRkGKvP~~vi~k~yG~ 63 (121)
T 1p9y_A 41 KVRIDGLRKGKVPMNIVAQRYGA 63 (121)
T ss_dssp TCCCTTSCTTCSCHHHHHHHHHH
T ss_pred hCccCCcCCCCCCHHHHHHHHHH
Confidence 47999999999888877776643
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=28.50 E-value=19 Score=31.04 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhH
Q 008056 479 EIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGG 516 (579)
Q Consensus 479 diAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGa 516 (579)
+.-++++| ...|||+|||+.-...+.+...+-++..-
T Consensus 29 ~~~~~~~k-~~~ipGFRkGKvP~~vi~k~yG~~~v~~e 65 (112)
T 2d3o_1 29 QVWAGLAR-DVRVPGFRPGKAPRKVIENRVGKGYVESQ 65 (112)
T ss_dssp HHHHHHHT-TSCBTTBCTTCCCSTTHHHHTTTTSSHHH
T ss_pred HHHHHHHh-hCCCCCcCCCCCCHHHHHHHhCHHHHHHH
Confidence 33344443 47999999999877777776653333333
No 12
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=20.88 E-value=1.2e+02 Score=32.89 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=23.1
Q ss_pred HhhhhccCCCCcchHHhHHhHhhHHHHHHHHH
Q 008056 307 CDTISESGFGQGSSLIICVGILTGYTETLYKM 338 (579)
Q Consensus 307 ~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~ 338 (579)
.|.+...| .|+|++|.++++-+..+++.+.
T Consensus 424 p~~l~~~g--gGTslLI~VgV~~~~~~qi~s~ 453 (482)
T 3mp7_A 424 ADFLGALG--TGTGILLTVGILYRFYEEIARE 453 (482)
T ss_dssp HHHHTCSS--CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccC--CceeeeeeHHHHHHHHHHHHHH
Confidence 36655455 5999999999999988887543
Done!