RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 008056
         (579 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  187 bits (477), Expect = 3e-54
 Identities = 68/430 (15%), Positives = 141/430 (32%), Gaps = 60/430 (13%)

Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY- 331
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 332 --TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASA 389
                    L + L S ++  P +  +  +   + ++ +VV   C +V++     +    
Sbjct: 183 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR---- 238

Query: 390 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI------ 443
                 I       P         PV+    L A   +    L       +         
Sbjct: 239 ------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV 292

Query: 444 ------------LNPETSVGARPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMG 488
                       L+   S      VY         +F IF +      PK +A  +  +G
Sbjct: 293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLG 352

Query: 489 ARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 547
             I   +  +  IE+ L +            +  LAT +  +         G   G T V
Sbjct: 353 MAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGGTGV 403

Query: 548 LIIVGSIIEL 557
           L+ V  +  +
Sbjct: 404 LLTVSIVYRM 413


>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia
           pseudomallei [TaxId: 28450]}
          Length = 406

 Score = 30.4 bits (68), Expect = 0.54
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWA 367
             + + L  L+ +S  WWP   G  G   I   W 
Sbjct: 44  AAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWH 78


>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 406

 Score = 30.1 bits (67), Expect = 0.83
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 371
           E +   L +L+ SS  WWP   G  G   I   W    T
Sbjct: 45  EAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAGT 83


>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 410

 Score = 29.6 bits (66), Expect = 1.0
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 333 ETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVT 371
           + L + + +++ +S  WWP   G  G   I   W    T
Sbjct: 49  DALTRDIEEVMTTSQPWWPADYGHYGPLFIRMAWHAAGT 87


>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
           562]}
          Length = 343

 Score = 28.8 bits (63), Expect = 1.9
 Identities = 4/48 (8%), Positives = 12/48 (25%)

Query: 454 PWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATI 501
               +           +F+  N  +    + +  G +   +      I
Sbjct: 262 CAGCFNAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFI 309


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,158,296
Number of extensions: 99573
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 12
Length of query: 579
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 489
Effective length of database: 1,171,896
Effective search space: 573057144
Effective search space used: 573057144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)