Query 008057
Match_columns 579
No_of_seqs 256 out of 1626
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 5.9E-82 1.3E-86 676.1 39.4 376 12-431 3-387 (436)
2 COG0123 AcuC Deacetylases, inc 100.0 1.3E-80 2.8E-85 651.7 32.4 310 12-339 1-313 (340)
3 PTZ00346 histone deacetylase; 100.0 7.5E-79 1.6E-83 648.9 38.6 316 13-342 20-341 (429)
4 PF00850 Hist_deacetyl: Histon 100.0 7E-80 1.5E-84 641.0 27.5 301 20-336 1-311 (311)
5 KOG1342 Histone deacetylase co 100.0 3.4E-66 7.3E-71 533.5 31.6 373 11-429 5-385 (425)
6 KOG1343 Histone deacetylase co 100.0 5.7E-61 1.2E-65 542.1 24.9 345 15-372 446-795 (797)
7 KOG1343 Histone deacetylase co 100.0 3.7E-50 7.9E-55 454.4 12.9 357 13-373 29-390 (797)
8 KOG1344 Predicted histone deac 100.0 2.4E-36 5.3E-41 295.6 13.2 289 12-322 13-305 (324)
9 PHA03014 hypothetical protein; 97.8 4.7E-05 1E-09 73.3 6.5 82 439-539 2-83 (163)
10 KOG4059 Uncharacterized conser 97.5 4.9E-05 1.1E-09 71.8 1.7 79 440-539 24-102 (193)
11 cd06661 GGCT_like GGCT-like do 90.5 0.48 1.1E-05 40.4 5.0 72 442-540 1-73 (99)
12 KOG3182 Predicted cation trans 72.9 5.6 0.00012 39.7 4.7 74 439-538 9-88 (212)
13 TIGR03018 pepcterm_TyrKin exop 68.9 81 0.0017 30.9 12.1 62 255-335 135-196 (207)
14 KOG0121 Nuclear cap-binding pr 61.9 5.5 0.00012 37.5 2.1 45 147-194 72-121 (153)
15 COG3914 Spy Predicted O-linked 51.6 3E+02 0.0065 32.2 13.8 162 135-336 293-481 (620)
16 cd01835 SGNH_hydrolase_like_3 46.3 76 0.0016 30.1 7.3 65 238-304 41-105 (193)
17 PF09754 PAC2: PAC2 family; I 42.8 70 0.0015 31.5 6.7 96 162-284 13-114 (219)
18 PRK13236 nitrogenase reductase 41.1 31 0.00067 36.1 4.0 35 161-200 22-56 (296)
19 cd04502 SGNH_hydrolase_like_7 40.6 52 0.0011 30.6 5.1 61 238-307 26-87 (171)
20 TIGR02707 butyr_kinase butyrat 37.9 64 0.0014 35.0 5.9 180 139-340 124-348 (351)
21 COG3426 Butyrate kinase [Energ 36.9 3.5E+02 0.0075 29.2 10.6 69 148-220 147-215 (358)
22 COG3703 ChaC Uncharacterized p 36.6 45 0.00097 33.2 4.0 77 436-540 8-94 (190)
23 TIGR02855 spore_yabG sporulati 36.5 1E+02 0.0022 32.5 6.8 59 258-317 143-206 (283)
24 cd01836 FeeA_FeeB_like SGNH_hy 35.4 1.1E+02 0.0024 28.9 6.5 58 238-305 44-102 (191)
25 cd04237 AAK_NAGS-ABP AAK_NAGS- 34.2 3.7E+02 0.008 28.0 10.7 91 251-360 1-93 (280)
26 TIGR01969 minD_arch cell divis 33.2 46 0.001 32.9 3.7 14 178-191 30-43 (251)
27 TIGR03029 EpsG chain length de 32.3 5E+02 0.011 26.3 11.2 14 178-191 133-146 (274)
28 PF13472 Lipase_GDSL_2: GDSL-l 29.5 1E+02 0.0022 27.6 5.0 43 234-279 29-72 (179)
29 PF02310 B12-binding: B12 bind 28.4 2.5E+02 0.0055 24.4 7.3 48 260-319 43-90 (121)
30 PF09757 Arb2: Arb2 domain; I 28.3 48 0.001 32.2 2.7 25 348-372 9-33 (178)
31 cd01841 NnaC_like NnaC (CMP-Ne 28.3 2.5E+02 0.0053 26.0 7.5 63 237-307 26-88 (174)
32 KOG4013 Predicted Cu2+ homeost 27.6 65 0.0014 32.5 3.5 44 273-327 154-197 (255)
33 cd01828 sialate_O-acetylestera 26.5 2.6E+02 0.0056 25.8 7.3 35 238-279 25-59 (169)
34 PF03266 NTPase_1: NTPase; In 26.2 38 0.00082 32.7 1.6 53 254-316 79-133 (168)
35 TIGR02931 anfK_nitrog Fe-only 26.1 3.2E+02 0.007 30.6 9.1 70 256-336 80-159 (461)
36 PF00148 Oxidored_nitro: Nitro 25.9 1.5E+02 0.0032 32.0 6.3 72 256-337 62-137 (398)
37 PRK11519 tyrosine kinase; Prov 25.8 3.8E+02 0.0083 31.8 10.1 14 178-191 556-569 (719)
38 cd01825 SGNH_hydrolase_peri1 S 25.8 1.9E+02 0.0041 27.0 6.3 21 260-280 48-68 (189)
39 PF05582 Peptidase_U57: YabG p 25.7 2E+02 0.0044 30.5 6.8 59 258-317 144-207 (287)
40 PRK14476 nitrogenase molybdenu 25.5 2.5E+02 0.0055 31.4 8.2 69 256-335 80-153 (455)
41 cd02067 B12-binding B12 bindin 24.9 1.3E+02 0.0028 26.6 4.7 49 261-321 43-91 (119)
42 cd03466 Nitrogenase_NifN_2 Nit 24.6 3.5E+02 0.0075 29.9 8.9 70 256-336 72-145 (429)
43 PRK10818 cell division inhibit 23.6 87 0.0019 31.7 3.8 16 178-193 32-47 (270)
44 PF04752 ChaC: ChaC-like prote 23.5 57 0.0012 32.1 2.3 74 440-539 1-84 (178)
45 TIGR01283 nifE nitrogenase mol 23.5 2.6E+02 0.0057 31.1 7.8 71 256-337 109-184 (456)
46 cd03111 CpaE_like This protein 23.1 1.3E+02 0.0029 26.3 4.4 14 178-191 30-43 (106)
47 cd00840 MPP_Mre11_N Mre11 nucl 22.9 3.6E+02 0.0079 25.8 7.9 60 249-317 23-84 (223)
48 cd01967 Nitrogenase_MoFe_alpha 22.5 2.8E+02 0.006 30.1 7.6 73 255-337 74-151 (406)
49 TIGR01287 nifH nitrogenase iro 22.1 1.1E+02 0.0025 31.1 4.3 18 178-196 29-46 (275)
50 PRK03011 butyrate kinase; Prov 21.9 1E+03 0.023 25.8 16.4 68 138-209 125-203 (358)
51 TIGR01285 nifN nitrogenase mol 21.6 3.8E+02 0.0083 29.8 8.5 71 256-337 79-158 (432)
52 PF00582 Usp: Universal stress 21.4 3.5E+02 0.0077 22.8 6.7 48 258-314 92-139 (140)
53 cd01833 XynB_like SGNH_hydrola 21.4 2.2E+02 0.0047 25.8 5.7 41 262-306 34-76 (157)
54 cd01981 Pchlide_reductase_B Pc 20.7 2.8E+02 0.0061 30.5 7.3 57 256-322 73-130 (430)
55 CHL00175 minD septum-site dete 20.7 1.1E+02 0.0023 31.3 3.8 17 178-194 45-61 (281)
56 PF02701 zf-Dof: Dof domain, z 20.3 35 0.00075 28.2 0.0 10 153-162 16-25 (63)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=5.9e-82 Score=676.08 Aligned_cols=376 Identities=22% Similarity=0.383 Sum_probs=323.9
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 008057 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (579)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (579)
+++|+++||+.+..|..+. .|||+|+|++.++++|++.|+...+.++.|++|+.++|++|||++||++|++.+.....
T Consensus 3 ~~~v~~~yd~~~~~h~~g~--~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYGP--GHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CceEEEEECccccCcCCcC--cCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 5679999999999999864 59999999999999999999999899999999999999999999999999987654211
Q ss_pred h---hhhhhccc-cCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHHH
Q 008057 92 S---RRDRIASK-LNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAAS 166 (579)
Q Consensus 92 ~---~~~~~~~~-~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA~ 166 (579)
. ....+... ..|++++++++++|++++|++|.|++++++|+. .||++|||| |||.+++|+|||+||||||||+
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~--~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~ 158 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQA--DICVNWSGGLHHAKRSEASGFCYINDIVLGIL 158 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCC--CEEeeCCCCCCCCccCCCCceeeecHHHHHHH
Confidence 0 00111111 138999999999999999999999999999986 489999999 9999999999999999999999
Q ss_pred HHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCC
Q 008057 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246 (579)
Q Consensus 167 ~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~ 246 (579)
+|++. .+||||||||||||||||+|||+||+|||+|+|++. .|||+| |..+++|.|.|+||++|||||+|
T Consensus 159 ~L~~~-----~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~--~ffPgt--G~~~e~G~g~G~g~~vNvPL~~G- 228 (436)
T PTZ00063 159 ELLKY-----HARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFG--DFFPGT--GDVTDIGVAQGKYYSVNVPLNDG- 228 (436)
T ss_pred HHHHh-----CCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCC--CcCCCC--CCccccCCCCCCceEEEeeCCCC-
Confidence 99874 379999999999999999999999999999999984 599986 89999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHH
Q 008057 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISN 326 (579)
Q Consensus 247 ~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~ 326 (579)
++|++|+.+|+.+|.|++++|+||+||||||||+|.+||||+++||.+||.++++.++++ ++|+++++||||++.++++
T Consensus 229 ~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~-~~pil~l~gGGY~~~~lar 307 (436)
T PTZ00063 229 IDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSL-NIPLLVLGGGGYTIRNVAR 307 (436)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhc-CCCEEEEeCccCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 5799999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----H
Q 008057 327 SVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK----V 402 (579)
Q Consensus 327 ~~~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v~~~~~~~W~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~----~ 402 (579)
||.+++..++|..... +...|.. .||+... |...|+. ..++++|.| +
T Consensus 308 ~w~~~t~~~~~~~~~~--~~~iP~~--------------~~~~~~~------------~~~~l~~-~~~~~~n~n~~~~l 358 (436)
T PTZ00063 308 CWAYETGVILNKHDEM--SDQISLN--------------DYYDYYA------------PDFQLHL-QPSNIPNYNSPEHL 358 (436)
T ss_pred HHHHHHHHHhCCcccC--CccCCCC--------------cchhhcC------------CCeEeec-CcccccCCCCHHHH
Confidence 9999999999963111 1122322 3444432 2233433 234566655 8
Q ss_pred HHHHHHHHHHhhcccCCCCCcccCCCCcc
Q 008057 403 ETLEAVLQVALSKLKVDDGHAELGMATPW 431 (579)
Q Consensus 403 ~~~~~~~~~~l~~l~~~~s~~i~~~s~tW 431 (579)
+.++..|+|+|+.|+++||.|.+..+++-
T Consensus 359 ~~~~~~~~~~l~~~~~ap~v~~~~~~~~~ 387 (436)
T PTZ00063 359 EKIKVKILENLRYLEHAPGVQFAYVPPDF 387 (436)
T ss_pred HHHHHHHHHHHhcCCCCCeeccccCCccc
Confidence 99999999999999999999987765543
No 2
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-80 Score=651.67 Aligned_cols=310 Identities=41% Similarity=0.742 Sum_probs=289.3
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 008057 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (579)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (579)
+|++.++|++.+..|..+. .|||+|.|++.+.++|++.++...+.+++|+++++++|++||+++||+.|++.+... +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~-~ 77 (340)
T COG0123 1 MMKTALIYHPEFLEHEPPP--GHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEE-G 77 (340)
T ss_pred CCcceEeeCHHHhcCCCCC--CCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhcccc-c
Confidence 3678999999999998874 599999999999999999998888889999999999999999999999999987652 1
Q ss_pred hhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCCCCCCCCCCccccccCcHHHHHHHHHhh
Q 008057 92 SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNE 171 (579)
Q Consensus 92 ~~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnVAIAA~~l~~~ 171 (579)
......+++++++|+++|++++|++++|++.+++|+ +++||++|||||||++++++|||+|||+||||++|+++
T Consensus 78 -----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~-~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~ 151 (340)
T COG0123 78 -----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE-DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK 151 (340)
T ss_pred -----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc
Confidence 112235789999999999999999999999999998 89999999999999999999999999999999999974
Q ss_pred CCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCCChhH
Q 008057 172 RPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDAD 251 (579)
Q Consensus 172 ~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~gD~~ 251 (579)
|++||+|||||||||||||+|||+||+|+|+|+|+++. .+||+| |..+|+|+|+ +|++||||||+| ++|++
T Consensus 152 ----~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~-~~yPgt--g~~~e~g~g~-~g~~vNiPLp~g-~~d~~ 222 (340)
T COG0123 152 ----GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGR-PFYPGT--GGADEIGEGK-EGNNVNIPLPPG-TGDDS 222 (340)
T ss_pred ----CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCC-CCCCcC--CCccccccCc-ccceEeeecCCC-CCcHH
Confidence 68999999999999999999999999999999999754 799997 6699999999 999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccC---CcEEEEeCCCCCcchHHHHH
Q 008057 252 YLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---GKIVLALEGGYNLGSISNSV 328 (579)
Q Consensus 252 Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~---grvv~vLEGGY~~~~la~~~ 328 (579)
|+.+|+.+|+|++++|+||+||||||||+|.+||||.|+||..+|.++++++++++. +|+++||||||+.+.+++++
T Consensus 223 y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~ 302 (340)
T COG0123 223 YLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSL 302 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999885 59999999999999999999
Q ss_pred HHHHHHHcCCC
Q 008057 329 LACMNVLLEDK 339 (579)
Q Consensus 329 ~a~~~~Llg~~ 339 (579)
.+++..|+|..
T Consensus 303 ~~~~~~l~~~~ 313 (340)
T COG0123 303 VAFLAGLAGLV 313 (340)
T ss_pred HHHHHHHcCCC
Confidence 99999999955
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=7.5e-79 Score=648.88 Aligned_cols=316 Identities=24% Similarity=0.376 Sum_probs=281.1
Q ss_pred CeEEEE----ecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhccc
Q 008057 13 RRVGLL----YDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSK 88 (579)
Q Consensus 13 ~~~~lv----yd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~ 88 (579)
+++.+| |-+++..+..+ ..|||+|+|++.++++|++.|+...+.++.|++|+.++|++||+++||++|++.+..
T Consensus 20 ~~~~~~~~~~y~~~~~~~~~~--~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 20 GRVALIDTSGYASDMNISAFV--PQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ceeEEEecCccccccccccCC--CcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 567899 55666666554 469999999999999999999998899999999999999999999999999874322
Q ss_pred chhh-hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHHH
Q 008057 89 QFDS-RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAAS 166 (579)
Q Consensus 89 ~~~~-~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA~ 166 (579)
.... ..........|++++++++++|++++|+++.|+++|++|+.+ +|+++||| |||+++++||||+||||||||+
T Consensus 98 ~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~--~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~ 175 (429)
T PTZ00346 98 SWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVD--VAVHWGGGMHHSKCGECSGFCYVNDIVLGIL 175 (429)
T ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCC--EEEeCCCCcCcCCCCCCCcchHHhHHHHHHH
Confidence 1000 000000112479999999999999999999999999999876 67788888 9999999999999999999999
Q ss_pred HHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCC
Q 008057 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246 (579)
Q Consensus 167 ~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~ 246 (579)
+|++. .+||||||||||||||||+|||+||+|||||+||++. .|||+| |...++|.|.|+||++|||||+|
T Consensus 176 ~ll~~-----~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~-~fyPgt--G~~~e~G~g~G~g~~vNVPL~~G- 246 (429)
T PTZ00346 176 ELLKC-----HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGE-SFFPGT--GHPRDVGYGRGRYYSMNLAVWDG- 246 (429)
T ss_pred HHHHc-----CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCC-CCCCCC--CCccccCCCCCceeEEeeeCCCC-
Confidence 99874 4799999999999999999999999999999999854 599996 89999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHH
Q 008057 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISN 326 (579)
Q Consensus 247 ~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~ 326 (579)
++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.+||.++++.++++ ++|+++++||||++.++++
T Consensus 247 ~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~-~~plv~vleGGY~~~~lar 325 (429)
T PTZ00346 247 ITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDL-GIPMLALGGGGYTIRNVAK 325 (429)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhc-CCCEEEEeCCcCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 5799999999999999999
Q ss_pred HHHHHHHHHcCCCCCC
Q 008057 327 SVLACMNVLLEDKPVA 342 (579)
Q Consensus 327 ~~~a~~~~Llg~~~~~ 342 (579)
+|..++..|+|.+.+.
T Consensus 326 ~w~~~t~~l~g~~i~~ 341 (429)
T PTZ00346 326 LWAYETSILTGHPLPP 341 (429)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 9999999999987543
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=7e-80 Score=641.02 Aligned_cols=301 Identities=45% Similarity=0.813 Sum_probs=244.4
Q ss_pred cccccccCCCCCCCCCCChHHHHHHHHHHHHc-CCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchhhhhhh--
Q 008057 20 DERMCKHNTPDGDYHPENPNRIKAIWNKLQAA-GIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDR-- 96 (579)
Q Consensus 20 d~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~-gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~~~~~~-- 96 (579)
||.|. |..+ ..|||+|+|++.+++.|++. ++++. ++|+.++|++|||++||+.|++.+..........
T Consensus 1 ~~~~~-~~~~--~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~ 71 (311)
T PF00850_consen 1 HPQYQ-HQLG--DGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSP 71 (311)
T ss_dssp ----T-T-CC--TTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHH
T ss_pred CCccc-CCCC--CCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccc
Confidence 45555 5554 46999999999999999986 76543 8999999999999999999998875432221000
Q ss_pred h-c--cccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCCCCCCCCCCccccccCcHHHHHHHHHhhCC
Q 008057 97 I-A--SKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERP 173 (579)
Q Consensus 97 ~-~--~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnVAIAA~~l~~~~~ 173 (579)
. . ....++|++++|+++|++++|++++|+++|++|+.+++||++|||||||.+++++|||+||||||||++|+++
T Consensus 72 ~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppgHHA~~~~a~GFC~~Nnvaiaa~~l~~~-- 149 (311)
T PF00850_consen 72 EFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPGHHAERDRAMGFCYFNNVAIAAKYLRKK-- 149 (311)
T ss_dssp HHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS--TT-BTTBBBTTBSS-HHHHHHHHHHHT--
T ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccccccCcCcCcceeeeccHHHHHHHHhhc--
Confidence 0 0 1256899999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCC-CCCCCCCccccCCCCCcceEeeeCCCCCCChhHH
Q 008057 174 ELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYP-ANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252 (579)
Q Consensus 174 ~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyP-gt~~G~~~eiG~g~G~G~niNVPLp~g~~gD~~Y 252 (579)
+|++||+|||||||||||||+|||+||+|||+|||+++ +.||| +| |+.+|+|+|+|+|+++|||||+| ++|++|
T Consensus 150 -~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~-~~~yP~~t--G~~~e~G~~~g~g~~~NipL~~g-~~d~~y 224 (311)
T PF00850_consen 150 -YGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYP-GNFYPFGT--GFPDEIGEGKGKGYNLNIPLPPG-TGDDEY 224 (311)
T ss_dssp -TTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-C-TTSTTTSS----TT--ESGGGTTSEEEEEE-TT-EBHHHH
T ss_pred -cccceEEEEEeCCCCcccchhheeCCCCEEecCccccc-cccCCCcC--CCccccCCCcccceeEecccccc-cchHHH
Confidence 47899999999999999999999999999999999985 56999 64 99999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccC---CcEEEEeCCCCCcchHHHHHH
Q 008057 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---GKIVLALEGGYNLGSISNSVL 329 (579)
Q Consensus 253 l~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~---grvv~vLEGGY~~~~la~~~~ 329 (579)
+.+|+++|.|++++|+||+||||||||+|.+||+|+++||+++|.+++++|++++. +|++++|||||+++++++++.
T Consensus 225 ~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 304 (311)
T PF00850_consen 225 LEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWA 304 (311)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHH
T ss_pred HHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999985 499999999999999999999
Q ss_pred HHHHHHc
Q 008057 330 ACMNVLL 336 (579)
Q Consensus 330 a~~~~Ll 336 (579)
+++++|.
T Consensus 305 ~~~~~L~ 311 (311)
T PF00850_consen 305 AVIAALA 311 (311)
T ss_dssp HHHHHH-
T ss_pred HHHHHhC
Confidence 9999883
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-66 Score=533.55 Aligned_cols=373 Identities=25% Similarity=0.440 Sum_probs=331.4
Q ss_pred CCCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccch
Q 008057 11 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQF 90 (579)
Q Consensus 11 ~~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~ 90 (579)
.++++.+.|+++....+. +..||+.|.|++.+.+++...||...+.+..|..|+.+|+.++||.+||+++++.++...
T Consensus 5 ~k~~V~y~yd~~vg~~~Y--g~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~ 82 (425)
T KOG1342|consen 5 IKRRVSYFYDPDVGNFHY--GQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENM 82 (425)
T ss_pred CCceEEEEecCccccccc--cCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccc
Confidence 467899999999886554 467999999999999999999999999999999999999999999999999999876543
Q ss_pred hh---hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHHH
Q 008057 91 DS---RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAAS 166 (579)
Q Consensus 91 ~~---~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA~ 166 (579)
.. ....+ .-.+|+++..+.++.+.+.+|++|.||.++..++.+ +||.+.+| |||.+++|+||||+||+++||.
T Consensus 83 ~~~~~~~~~f-Nvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~d--IaINW~GGlHHAKK~eASGFCYvNDIVL~IL 159 (425)
T KOG1342|consen 83 ETFNKELKQF-NVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECD--IAINWAGGLHHAKKSEASGFCYVNDIVLGIL 159 (425)
T ss_pred cccchHHHhc-CCCCCCccccCHHHHHHHhcccchHHHHHhCCCCce--EEEecCcccccccccccCcceeehHHHHHHH
Confidence 21 11111 113478899999999999999999999999998865 56889999 9999999999999999999999
Q ss_pred HHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCC
Q 008057 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246 (579)
Q Consensus 167 ~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~ 246 (579)
.|++. -+||++||+|+|||||+|++||..+||+|+|+|.|.+ .||||| |+..++|.|+|+.|.|||||..|
T Consensus 160 eLlK~-----h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~-~fFPGT--G~l~d~G~~kGkyyavNVPL~dG- 230 (425)
T KOG1342|consen 160 ELLKY-----HKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGP-GFFPGT--GDLSDIGAGKGKYYAVNVPLKDG- 230 (425)
T ss_pred HHHHh-----CCceEEEEecccCCccHHHHHhccceeEEEEEEeccC-CCCCCC--CcceeccCCCCceEEEccchhcc-
Confidence 99985 3699999999999999999999999999999999864 499996 99999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHH
Q 008057 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISN 326 (579)
Q Consensus 247 ~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~ 326 (579)
++|+.|..+|+.||-++++.|+|+.||++||.|+..+|+||.++||..|.+.+.+.++++. -|++++.+|||+++++|+
T Consensus 231 idD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn-~pllvlGGGGYT~rNVAR 309 (425)
T KOG1342|consen 231 IDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFN-LPLLVLGGGGYTLRNVAR 309 (425)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcC-CcEEEecCCccchhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 689999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----H
Q 008057 327 SVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK----V 402 (579)
Q Consensus 327 ~~~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v~~~~~~~W~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~----~ 402 (579)
||......++|...+...|. . .|.+.+ +|.+.|+.. .+++||.| |
T Consensus 310 cWtYeT~v~~~~~~~~elP~----n--------------~y~~yF------------~PDy~l~~~-~~~~~n~Nt~~~l 358 (425)
T KOG1342|consen 310 CWTYETGVLLDQELPNELPY----N--------------DYFEYF------------GPDYKLHID-PSNMENFNTPHYL 358 (425)
T ss_pred HHHHHhhhhcCccccccCCC----c--------------cchhhh------------CCCcccccC-ccchhcccCHHHH
Confidence 99999999999776543332 2 366666 456667775 49999988 9
Q ss_pred HHHHHHHHHHhhcccCCCCCcccCCCC
Q 008057 403 ETLEAVLQVALSKLKVDDGHAELGMAT 429 (579)
Q Consensus 403 ~~~~~~~~~~l~~l~~~~s~~i~~~s~ 429 (579)
++++.++.|+|++|+++||.|.+..+.
T Consensus 359 ~~i~~~~~enL~~l~~apSVqm~~~p~ 385 (425)
T KOG1342|consen 359 ESIRNEILENLRMLQHAPSVQMQMIPN 385 (425)
T ss_pred HHHHHHHHHHHHhccCCCcccccccCC
Confidence 999999999999999999999876653
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-61 Score=542.10 Aligned_cols=345 Identities=39% Similarity=0.652 Sum_probs=291.4
Q ss_pred EEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchhhhh
Q 008057 15 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRR 94 (579)
Q Consensus 15 ~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~~~~ 94 (579)
+..+.+-.+..|.......|++.|.|...- +. .|+...|..+ |+.++|+.||+..|+..+............
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~p~r~~t~---~~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~ 517 (797)
T KOG1343|consen 446 HALSADQAELELAGLDRSRSPESPARFTTG---LH-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLK 517 (797)
T ss_pred hcccccccccccccccccCCcccchhhhcc---cc-cccccccccc----cchhhhhhcccchhhcccchhhhcccccch
Confidence 344444444444443334689999992221 22 7888888877 999999999999999986522111110000
Q ss_pred hhhccccCceecccChHHHHHHHHhHHHHHHHHH--HcCCCceEEEEeCCCCCCCCCCCCccccccCcHHHHHHHHHhhC
Q 008057 95 DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERV--AEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNER 172 (579)
Q Consensus 95 ~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V--~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnVAIAA~~l~~~~ 172 (579)
.........+++.+.||.++..++|++..+++.+ +.+++.+|||++|||||||.+..+||||+|||||||+++|+...
T Consensus 518 ~~~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppGHha~~~~a~gfc~fn~vaiaak~l~~~~ 597 (797)
T KOG1343|consen 518 FESRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQQRS 597 (797)
T ss_pred hhhhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCccccccCCcceeeeecchhhhhHHhhhhh
Confidence 0011123467888888888888888888888888 55666779999999999999999999999999999999998753
Q ss_pred CcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCCChhHH
Q 008057 173 PELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252 (579)
Q Consensus 173 ~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~gD~~Y 252 (579)
.++||+|||||||||||||.+||.||+|||+|+|++++|.|||++ |..+++|.++|.|+|+||||+.+..+|.+|
T Consensus 598 ---~~~rilivdwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~--g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey 672 (797)
T KOG1343|consen 598 ---KASRILIVDWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGS--GAPDEVGKGEGVGFNVNVAWTGGLDPDAEY 672 (797)
T ss_pred ---hhcceEEEeecccCCcceeeeeccCccccccccchhccCCcCCCC--CCchhcccccccceeecccccCCCCCCHHH
Confidence 478999999999999999999999999999999999999999996 999999999999999999999886778999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHH
Q 008057 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACM 332 (579)
Q Consensus 253 l~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~~~a~~ 332 (579)
+.+|+.+++|++++|.||+|+||+|||++.+||||++.+|.++|+.+++.|+++|+||++++|||||+..+++++..+++
T Consensus 673 ~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~ 752 (797)
T KOG1343|consen 673 LAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACV 752 (797)
T ss_pred HHHHHHhhHHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhcccchhh
Q 008057 333 NVLLEDKPVAGSS---EAYPFESTWRVIQAVRKKLSAFWPTLA 372 (579)
Q Consensus 333 ~~Llg~~~~~~~~---~~~p~~~~~~~i~~v~~~~~~~W~~l~ 372 (579)
++|+|.+.+.+.+ ...|..++..+++++++.+++||+|++
T Consensus 753 ~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~ 795 (797)
T KOG1343|consen 753 RALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQ 795 (797)
T ss_pred HhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhccccccc
Confidence 9999988766332 234555688999999999999999985
No 7
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-50 Score=454.45 Aligned_cols=357 Identities=35% Similarity=0.540 Sum_probs=319.7
Q ss_pred CeEEEEecccccccCCCCCCCC-CCChHHHHHHHHHHHHcCCCCcceEecC-CCCCHHHHhccCCHHHHHHHHHhcccch
Q 008057 13 RRVGLLYDERMCKHNTPDGDYH-PENPNRIKAIWNKLQAAGIPQRCVVLNA-KEAKDKNLLSVHTENHVNLIKNISSKQF 90 (579)
Q Consensus 13 ~~~~lvyd~~~~~H~~~~~~~H-pE~P~Rl~~i~~~L~~~gl~~~~~~~~p-~~a~~~eL~~VHs~~YI~~l~~~~~~~~ 90 (579)
+.+.++|++.+..|...-...| ++.|+|++.+.+.+.+.++.+.|.+..+ +.+++++++.||+++|++.+........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 4799999999999963211123 4889999999999999999999888776 8999999999999999999987653222
Q ss_pred hhhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCCCCCCCCCCccccccCcHHHHHHHHHh
Q 008057 91 DSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLN 170 (579)
Q Consensus 91 ~~~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnVAIAA~~l~~ 170 (579)
....+.+.+.++++|.++.++.+|.++.|++++..+.++.|++.|++|.+|||||||+++...|||+|||||++++..+.
T Consensus 109 e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~ 188 (797)
T KOG1343|consen 109 EEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLL 188 (797)
T ss_pred hhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhcccc
Confidence 22244455668899999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred hCCcCCcceEEEEEcccccCCcccccccc--CCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCCC
Q 008057 171 ERPELGINKILIVDWDVHHGNSTQKMFWK--DPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCG 248 (579)
Q Consensus 171 ~~~~~g~~RVlIVD~DvHHGNGTq~iF~~--Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~g 248 (579)
++ ..+||+|+|||+|||+|||..|++ |++|+++|+|++..|.|||....|..+.+|.|+|.|+++|+||..++++
T Consensus 189 ~~---~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~ 265 (797)
T KOG1343|consen 189 RR---KKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMT 265 (797)
T ss_pred cc---ccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCc
Confidence 43 379999999999999999999999 9999999999999999999998999999999999999999999998899
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC-CCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH
Q 008057 249 DADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDP-LGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327 (579)
Q Consensus 249 D~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~Dp-LG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~ 327 (579)
|.+|..+|.++++|...+|+||||++++|||++.+|| +|.|..||.+|.+++.+.+-+.++++++++||||+.+.++++
T Consensus 266 ~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~ 345 (797)
T KOG1343|consen 266 DADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS 345 (797)
T ss_pred chhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh
Confidence 9999999999999999999999999999999999997 799999999999999984444448999999999999999988
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhc
Q 008057 328 VLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLAD 373 (579)
Q Consensus 328 ~~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v~~~~~~~W~~l~~ 373 (579)
...+..|+|++.........|.+++.+.+..+.+.+..+|+|+..
T Consensus 346 -~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~ 390 (797)
T KOG1343|consen 346 -QLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGG 390 (797)
T ss_pred -hhhHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhcccccccC
Confidence 889999999887665545558899999999999999999999864
No 8
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-36 Score=295.57 Aligned_cols=289 Identities=24% Similarity=0.372 Sum_probs=232.0
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 008057 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (579)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (579)
..+++|||++.|..-..+-...||.+..+...+.+.|.+.++++.-.+++|.+++.++|++|||.+|++.++..-....-
T Consensus 13 ~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~I 92 (324)
T KOG1344|consen 13 AGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQI 92 (324)
T ss_pred cccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeEE
Confidence 45799999999998887777889999999999999999999998888899999999999999999999999874322100
Q ss_pred hhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHHHHHHh
Q 008057 92 SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLN 170 (579)
Q Consensus 92 ~~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA~~l~~ 170 (579)
. .-.+....+..++......--++-+|+++.|+...+ +.++|+.-.+| |||..+++.|||.+-|+.+|+..|-+
T Consensus 93 ~-EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAl----e~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFe 167 (324)
T KOG1344|consen 93 T-EIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLAL----ERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFE 167 (324)
T ss_pred E-eccccccCchhhhhhhhccceeeccCceeehhhhhh----hcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHh
Confidence 0 000000011122323333445667788888887764 46788888888 99999999999999999999999976
Q ss_pred hCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCCChh
Q 008057 171 ERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDA 250 (579)
Q Consensus 171 ~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~gD~ 250 (579)
+. -+.|++|||+|+|+|||-+.-|.+| .|..+.+.. .-.||+.. .. .+-..-.|.|..| +.|+
T Consensus 168 r~---~isr~mivDLDAHQGNghErdf~~~-~vyi~d~yn---r~iyp~D~--~A-------k~~Ir~kVEl~~g-Tedd 230 (324)
T KOG1344|consen 168 RK---AISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYN---RFIYPRDH--VA-------KESIRCKVELRNG-TEDD 230 (324)
T ss_pred hh---hhhheEEEecccccCCccccccccc-eeehhhhhh---hhccchhH--HH-------HHHhhheeeeecC-CCch
Confidence 53 3899999999999999999999888 666666653 45899742 11 1122345666676 8999
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccC---CcEEEEeCCCCCcc
Q 008057 251 DYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---GKIVLALEGGYNLG 322 (579)
Q Consensus 251 ~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~---grvv~vLEGGY~~~ 322 (579)
+|+.-+++.++..+.+|+||+||+.||.|...|||||.+.+|++|.-...+++.++.. .|+|++..|||--.
T Consensus 231 eYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~ 305 (324)
T KOG1344|consen 231 EYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA 305 (324)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh
Confidence 9999999999999999999999999999999999999999999999999999988763 47999999999643
No 9
>PHA03014 hypothetical protein; Provisional
Probab=97.77 E-value=4.7e-05 Score=73.27 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=61.3
Q ss_pred cEEEeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecCCCccCCceeeeecCCCCCCCc
Q 008057 439 DVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPECDCRHK 518 (579)
Q Consensus 439 ~vwY~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s~~~w~~gg~af~~~~~~~~~~ 518 (579)
|-||..|||||+.+++. ++||=|.+. ...-..+.-.|+.-|. -| ..|+ ||+|=+-|++. +.
T Consensus 2 ~~~YfAYGSNl~~~qm~------------~Rcp~~~~a--~~vg~a~L~~~~~~L~-f~-~~~~-Ga~ATIvp~~g--~~ 62 (163)
T PHA03014 2 YKYYFGYGANQNINYLI------------HMHKLKIDF--LNIKIGIILGHSFKLC-YS-KEID-SVIASIKKDDN--GI 62 (163)
T ss_pred ceEEEEEccCcCHHHHH------------HhCCCCCCC--ceEEEEEeeccceEEe-cc-CCcC-CceEEEEECCC--CE
Confidence 57999999999999865 445545332 3233344555644444 23 3697 99999999877 55
Q ss_pred eeeeeehhcHHHHHHHHHhhc
Q 008057 519 AYLCLYRITLEQFNDVLLQEN 539 (579)
Q Consensus 519 ~~~~~y~it~~Qf~dv~~qe~ 539 (579)
+++.+|.|+.+...++=.||.
T Consensus 63 V~Gvlw~i~~~dl~~LD~~EG 83 (163)
T PHA03014 63 VFGILYEFNESIMKKFDKQEF 83 (163)
T ss_pred EEEEEEEeCHHHHHHHhhhcC
Confidence 999999999999999999997
No 10
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=4.9e-05 Score=71.85 Aligned_cols=79 Identities=23% Similarity=0.408 Sum_probs=66.6
Q ss_pred EEEeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecCCCccCCceeeeecCCCCCCCce
Q 008057 440 VFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPECDCRHKA 519 (579)
Q Consensus 440 vwY~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s~~~w~~gg~af~~~~~~~~~~~ 519 (579)
+.|-.|||||..+|+.. + -+++.+-|++- .=.+||=||++|. .|+ |++|=+-|... +.+
T Consensus 24 FlYFafGSNlL~~RIh~--r---npsA~~~c~a~------------L~dfrLdFan~S~-~W~-G~vATI~~t~G--deV 82 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHI--R---NPSAVRICPAL------------LPDFRLDFANESA-GWS-GSVATIVPTQG--DEV 82 (193)
T ss_pred hhhhhcccchhhhheee--c---CCCceeecccc------------Ccceeeecccccc-ccc-cceeEEecCCC--CeE
Confidence 78999999999999863 2 25666666664 3358999999995 899 99999999887 559
Q ss_pred eeeeehhcHHHHHHHHHhhc
Q 008057 520 YLCLYRITLEQFNDVLLQEN 539 (579)
Q Consensus 520 ~~~~y~it~~Qf~dv~~qe~ 539 (579)
+++.+++..+-.+++=.||.
T Consensus 83 WG~vWKm~~snl~slDeQEg 102 (193)
T KOG4059|consen 83 WGTVWKMDLSNLPSLDEQEG 102 (193)
T ss_pred EEEEEEcccccCccchhhhc
Confidence 99999999999999999993
No 11
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=90.52 E-value=0.48 Score=40.36 Aligned_cols=72 Identities=22% Similarity=0.205 Sum_probs=48.7
Q ss_pred EeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCccccccccc-ccceeeeecCCCccCCceeeeecCCCCCCCcee
Q 008057 442 YASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTF-PHHLFFGHDSSHTWGPGGVAFLNPECDCRHKAY 520 (579)
Q Consensus 442 Y~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~-p~~~yf~~~s~~~w~~gg~af~~~~~~~~~~~~ 520 (579)
|-.|||||+.+++.... + .++ ...+-.+ -++++|...+ +.+-+-|... ..+.
T Consensus 1 ~F~YGsl~~~~~~~~~~-~----------------~~~-~~~~a~l~g~~l~~~~~~-------~~p~~~~~~~--~~v~ 53 (99)
T cd06661 1 LFVYGTLMDGEVLHARL-G----------------RAL-FLGPATLKGYRLVFGGGS-------GYPGLVPGPG--ARVW 53 (99)
T ss_pred CEEeccCCChhHhHhhC-C----------------CCc-eEEEEEecCcEEEecCCC-------ccCEEEeCCC--CEEE
Confidence 35799999999998761 1 111 1112222 5677776543 4555555554 4699
Q ss_pred eeeehhcHHHHHHHHHhhcC
Q 008057 521 LCLYRITLEQFNDVLLQENV 540 (579)
Q Consensus 521 ~~~y~it~~Qf~dv~~qe~~ 540 (579)
+.+|.|+.+++.-+-..|..
T Consensus 54 G~v~~i~~~~l~~LD~~E~~ 73 (99)
T cd06661 54 GELYEVDPEDLARLDAFEGV 73 (99)
T ss_pred EEEEEECHHHHHhhhhhcCC
Confidence 99999999999999999985
No 12
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=72.88 E-value=5.6 Score=39.68 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=57.9
Q ss_pred cEEEeecCCCCChh------hhhhhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecCCCccCCceeeeecCC
Q 008057 439 DVFYASFGSNMWKS------RFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPE 512 (579)
Q Consensus 439 ~vwY~sygsn~~~~------r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s~~~w~~gg~af~~~~ 512 (579)
-+|-=-|||=+|.. |+.|||.| -..+-+.||.|.+ |..- ..|=|+=|-|.
T Consensus 9 ~lWVFGYGSLiW~Pgf~y~~~~~gfI~G----y~RrF~q~s~dHR----------------Gtp~----~PGRv~TLi~~ 64 (212)
T KOG3182|consen 9 ALWVFGYGSLIWKPGFHYDESIPGFIKG----YKRRFWQGSTDHR----------------GTPE----HPGRVATLIPY 64 (212)
T ss_pred eEEEEeecceeecCCCCccccchhhhee----hhhheeccccccC----------------CCCC----CCceeEEeecC
Confidence 59999999999987 88999999 4455677888865 2221 24778888887
Q ss_pred CCCCCceeeeeehhcHHHHHHHHHhh
Q 008057 513 CDCRHKAYLCLYRITLEQFNDVLLQE 538 (579)
Q Consensus 513 ~~~~~~~~~~~y~it~~Qf~dv~~qe 538 (579)
.+ ..++|++|+|..+|-..++.=+
T Consensus 65 ~e--~~~wGvay~V~g~~~~~~l~yl 88 (212)
T KOG3182|consen 65 EE--AITWGVAYRVRGKQASEVLEYL 88 (212)
T ss_pred Cc--ceEeeEEEEecchhHHHHHHHH
Confidence 77 4589999999998888877665
No 13
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=68.88 E-value=81 Score=30.89 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHHH
Q 008057 255 VWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNV 334 (579)
Q Consensus 255 af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~~~a~~~~ 334 (579)
.+.+++..+.++|++|+|||-++--.... .+..+...+. .+++|.+-+.... +.+...++.
T Consensus 135 ~l~~~l~~l~~~y~~D~IiiD~pp~~~~~---------------~~~~l~~~aD-~viiV~~~~~~~~---~~~~~~~~~ 195 (207)
T TIGR03018 135 RMRSLLHELARRYPDRIIIIDTPPLLVFS---------------EARALARLVG-QIVLVVEEGRTTQ---EAVKEALSA 195 (207)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCCcchh---------------HHHHHHHhCC-EEEEEEECCCCCH---HHHHHHHHH
Confidence 45666667777888899999665222111 2334555565 4666777665532 333444444
Q ss_pred H
Q 008057 335 L 335 (579)
Q Consensus 335 L 335 (579)
|
T Consensus 196 l 196 (207)
T TIGR03018 196 L 196 (207)
T ss_pred h
Confidence 4
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=61.86 E-value=5.5 Score=37.47 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCCCCCcccccc-----CcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccc
Q 008057 147 AEPDEAMGFCLY-----NNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQ 194 (579)
Q Consensus 147 A~~~~a~GFC~f-----NnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq 194 (579)
-..-.++|||++ .++-.|.+|+-..+. -+|++-+|||.-.=+|-|
T Consensus 72 r~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 72 RFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred cCCcCccceEEEEEecchhHHHHHHHhccCcc---cccceeeeccccchhhhh
Confidence 355678999987 366677888866543 379999999987766666
No 15
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=51.64 E-value=3e+02 Score=32.16 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=95.6
Q ss_pred eEEEEeCCCCCCCCCC----CCccccccC---cHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEe
Q 008057 135 SAFAIVRPPGHHAEPD----EAMGFCLYN---NVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFS 207 (579)
Q Consensus 135 ~afalvRPPGHHA~~~----~a~GFC~fN---nVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iS 207 (579)
++|-+. ||+--|... ...++|-++ +..|| ...... |+ =..||+|.|-=|+|..||...|-=+-||
T Consensus 293 fay~~g-~~~~dal~~rI~a~~~~~~~~~~~dd~e~a-~~I~~d----~I--dILvDl~g~T~d~r~~v~A~RpAPiqvs 364 (620)
T COG3914 293 FAYSLG-PPHTDALQERISAAVEKWYPIGRMDDAEIA-NAIRTD----GI--DILVDLDGHTVDTRCQVFAHRPAPIQVS 364 (620)
T ss_pred EEEecC-CCCchhHHHHHHHhhhheeccCCcCHHHHH-HHHHhc----CC--eEEEeccCceeccchhhhhcCCCceEEe
Confidence 445444 666444433 467899998 44444 333332 23 2568999999999999999999888889
Q ss_pred cccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCCChhHHHHHHHHHHHHHHHHhC-------------------
Q 008057 208 VHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFG------------------- 268 (579)
Q Consensus 208 iH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~------------------- 268 (579)
.-+ ||+| +|.+.. ---=+.+| -| |++ -..-|-..+-++ | .=|+
T Consensus 365 wlG------y~aT-~g~p~~-DY~I~D~y--~v--Pp~--ae~yysEkl~RL--p--~cy~p~d~~~~v~p~~sR~~lgl 426 (620)
T COG3914 365 WLG------YPAT-TGSPNM-DYFISDPY--TV--PPT--AEEYYSEKLWRL--P--QCYQPVDGFEPVTPPPSRAQLGL 426 (620)
T ss_pred ecc------cccc-cCCCcc-eEEeeCce--ec--Cch--HHHHHHHHHHhc--c--cccCCCCCcccCCCCcchhhcCC
Confidence 875 5665 232211 00001112 22 332 233344433331 2 1222
Q ss_pred -CCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHHHHc
Q 008057 269 -PDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336 (579)
Q Consensus 269 -PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~~~a~~~~Ll 336 (579)
+|.+|..|| -+..+.|++-+..=.+.|+.. .+-+++++.||-+ ..+.+.++.+.
T Consensus 427 p~~avVf~c~--------~n~~K~~pev~~~wmqIL~~v-P~Svl~L~~~~~~-----~~~~~~l~~la 481 (620)
T COG3914 427 PEDAVVFCCF--------NNYFKITPEVFALWMQILSAV-PNSVLLLKAGGDD-----AEINARLRDLA 481 (620)
T ss_pred CCCeEEEEec--------CCcccCCHHHHHHHHHHHHhC-CCcEEEEecCCCc-----HHHHHHHHHHH
Confidence 256666666 345678888888777777776 4568888999855 34455566654
No 16
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.29 E-value=76 Score=30.09 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=38.4
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHH
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLM 304 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~ 304 (579)
+|...+. .+-.+++..|+..+.+.+..++||+|+|..|..=.....-+....+.+.|....+.+.
T Consensus 41 ~N~gi~G--~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii 105 (193)
T cd01835 41 YNLGVRG--DGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLL 105 (193)
T ss_pred EeecCCC--CCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHH
Confidence 3666543 3445677777776665555589999999999864433211122355666665444443
No 17
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=42.83 E-value=70 Score=31.46 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCcCCcceEEEEEcccccC-Ccc--ccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceE
Q 008057 162 AVAASFLLNERPELGINKILIVDWDVHHG-NST--QKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNI 238 (579)
Q Consensus 162 AIAA~~l~~~~~~~g~~RVlIVD~DvHHG-NGT--q~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~ni 238 (579)
-+|+.++.++ .++++|..||-|-++- .|. .-.+.++.+.+.-.+ .+|=. ++.++.+
T Consensus 13 ~la~d~Li~~---l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~------~iy~~------------~~~~i~v 71 (219)
T PF09754_consen 13 QLAVDHLIES---LNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPL------EIYYS------------EDSKILV 71 (219)
T ss_dssp HHHHHHHHHH---SCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SE------EEEEE------------ECTTEEE
T ss_pred HHHHHHHHHh---CCCEEEEEEeccccCCCccCCCeEEeccccceeccce------EEEEE------------CCCCEEE
Confidence 4688899875 5799999999955543 221 111111101111111 12211 1112222
Q ss_pred ---eeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC
Q 008057 239 ---NVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD 284 (579)
Q Consensus 239 ---NVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~D 284 (579)
++|.|++ +...|-+.|+..+++++..-||+-.|.+++...
T Consensus 72 l~~~~p~~~~------~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~ 114 (219)
T PF09754_consen 72 LQGRSPIPPG------RWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPH 114 (219)
T ss_dssp EEESSE--SC------GHHHHHHHHHHHHHHTTECEEEEEEEEEESS-T
T ss_pred EEecCCCCch------HHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCc
Confidence 4477765 344455557889999999999999999999865
No 18
>PRK13236 nitrogenase reductase; Reviewed
Probab=41.11 E-value=31 Score=36.08 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccC
Q 008057 161 VAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKD 200 (579)
Q Consensus 161 VAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~D 200 (579)
+|+-..+++.+. | +||++||.|.+++| |.-+|...
T Consensus 22 ~a~NLA~~La~~---G-~rVLliD~D~q~~~-~~~l~~~~ 56 (296)
T PRK13236 22 TSQNTLAAMAEM---G-QRILIVGCDPKADS-TRLMLHSK 56 (296)
T ss_pred HHHHHHHHHHHC---C-CcEEEEEccCCCCc-cchhccCC
Confidence 444444555442 2 69999999999877 66666433
No 19
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=40.60 E-value=52 Score=30.61 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=34.0
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCccCChhhHHHHHHHHHhcc
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFA 307 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGf-Da~~~DpLG~l~lT~~gy~~l~~~l~~~a 307 (579)
+|..+.. ..-.+.+..+++ .+..++||+|++..|. |...+-+ ..-..+.|..+.+.+++..
T Consensus 26 ~N~Gi~G--~~~~~~~~~~~~----~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~ 87 (171)
T cd04502 26 VNRGFGG--STLADCLHYFDR----LVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred eecCccc--chHHHHHHHHHh----hhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHC
Confidence 4665542 223344444433 3456899999999998 5443222 2223445666666666543
No 20
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=37.85 E-value=64 Score=34.97 Aligned_cols=180 Identities=18% Similarity=0.186 Sum_probs=96.6
Q ss_pred EeCCCCCCCCCC-----------CCccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEe
Q 008057 139 IVRPPGHHAEPD-----------EAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFS 207 (579)
Q Consensus 139 lvRPPGHHA~~~-----------~a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iS 207 (579)
+.-++-|+-.+. +-.||--+|--.||-+++......+.-.+++++=+ |+|.--.+..|.+++--|
T Consensus 124 vfDt~fh~~~~~~a~~~alpe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hL----GtGig~~ai~~Gk~vdgs 199 (351)
T TIGR02707 124 IVDPVVVDEMEDVARISGLPEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHM----GGGISVAAHRKGRVIDVN 199 (351)
T ss_pred EcCChhhhcChHHHHHhccchhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEe----CCCceeeeEECCEEEEcC
Confidence 455555665432 34588888999999888765432222237777654 999999999999887766
Q ss_pred cccCCCCCCCCCCCCCCCc--------cccC-C---------CCCcce-----Eeee-C-CCCCCChhHHHHHHH-----
Q 008057 208 VHRHEFGTFYPANDDGFYT--------MIGE-G---------PGLGYN-----INVP-W-ENGRCGDADYLAVWD----- 257 (579)
Q Consensus 208 iH~~~~g~fyPgt~~G~~~--------eiG~-g---------~G~G~n-----iNVP-L-p~g~~gD~~Yl~af~----- 257 (579)
.-....+.|-| +..|+.+ ..+. + .+.|.. .+.. + ..-..||..-..+|+
T Consensus 200 ~G~agEg~~~~-tr~G~id~~~~~~~~~~~~~s~~el~~~l~~~sGl~~~~gs~d~reI~~~a~~GD~~A~~a~d~~~~~ 278 (351)
T TIGR02707 200 NALDGEGPFSP-ERSGTLPLGDLVDLCYSGKYTKEEMKKKIVGNGGLVAYLGTNDAREVEKRIEAGDEKAKLILDAMAYQ 278 (351)
T ss_pred CCCCCcCCccc-CccCCCCchhHHHHHhcCCCCHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65332222333 1122211 0000 0 000100 0000 0 000134543333443
Q ss_pred --HHHHHHHHHh--CCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHH
Q 008057 258 --HILLPVAKDF--GPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMN 333 (579)
Q Consensus 258 --~iv~Pil~~f--~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~~~a~~~ 333 (579)
..|.-++..+ +||.||+..|.= ..|. -...+.+.+..+| -|.++.|.+..+.+++.+ ++
T Consensus 279 la~~Ia~l~~~l~g~pD~IV~gGGI~--e~~~---------l~~~I~~~l~~~a---~v~~~pg~~e~~ala~ga---~r 341 (351)
T TIGR02707 279 IAKEIGKMAVVLKGKVDAIVLTGGLA--YSKY---------FVSEIIKRVSFIA---PVLVYPGEDEMEALAEGA---LR 341 (351)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchhh--cCHH---------HHHHHHHHHHhhC---CEEEeCCcHHHHHHHHhH---HH
Confidence 3344555668 899999988853 2222 2455556666665 366678877766666554 66
Q ss_pred HHcCCCC
Q 008057 334 VLLEDKP 340 (579)
Q Consensus 334 ~Llg~~~ 340 (579)
.|.|.+.
T Consensus 342 v~~~~e~ 348 (351)
T TIGR02707 342 VLRGEEK 348 (351)
T ss_pred HhcCCcc
Confidence 6666543
No 21
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=36.91 E-value=3.5e+02 Score=29.16 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCCCccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCC
Q 008057 148 EPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPAN 220 (579)
Q Consensus 148 ~~~~a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt 220 (579)
.-.+-+=|--+|--|+|=+++.+-..++---++.| +|-|-||.-.-.++.+|.-+.=--...|.|-|-.
T Consensus 147 ~i~RkSiFHALN~KAVarr~A~e~gk~yee~n~vV----aHmGggiSV~ah~~GrvIDvnnaldgeGPfsper 215 (358)
T COG3426 147 EIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVV----AHMGGGISVGAHKQGRVIDVNNALDGEGPFSPER 215 (358)
T ss_pred cchhHHHHHHhhHHHHHHHHHHHhccchhhheEEE----EeccCceEEEEecCCcEEeccCCCCCCCCCCccc
Confidence 33455668889999999999987654443345544 5889999988888888877765555567777753
No 22
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=36.63 E-value=45 Score=33.24 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=52.8
Q ss_pred CcccEEEeecCCCCChhhhh------hhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecCCCccCCceeeee
Q 008057 436 SKVDVFYASFGSNMWKSRFL------CYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFL 509 (579)
Q Consensus 436 ~~~~vwY~sygsn~~~~r~~------cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s~~~w~~gg~af~ 509 (579)
+++.+|+=.|||=||.++|- |.|.| = -+.+-+-+..++|+... .|=|+=|
T Consensus 8 ~~~~~WVFgYGSLmW~P~f~~~e~~~a~~~G------------~--------~Rsfc~~s~~~RGT~~~----PGlvl~L 63 (190)
T COG3703 8 DPDELWVFGYGSLMWNPGFEFTEVRRATLHG------------Y--------HRSFCLRSTDHRGTAEQ----PGLVLGL 63 (190)
T ss_pred CCCCeEEEEecceeecCCccccceeEEEEec------------c--------eeEEEEEEeeecCCcCC----CceEEEe
Confidence 55669999999999999773 22222 0 23344455566666653 3777777
Q ss_pred cCCCCCCCceeeeeehhc----HHHHHHHHHhhcC
Q 008057 510 NPECDCRHKAYLCLYRIT----LEQFNDVLLQENV 540 (579)
Q Consensus 510 ~~~~~~~~~~~~~~y~it----~~Qf~dv~~qe~~ 540 (579)
+. .+++.+-+|+|- .+++.=+..-|+.
T Consensus 64 ~~----GGsc~GvafRip~~~~~~v~~yL~~RE~~ 94 (190)
T COG3703 64 DR----GGSCEGVAYRIPEAHAEEVLEYLREREMN 94 (190)
T ss_pred eC----CCcEEEEEEEcCchhhHHHHHHHHHhhcc
Confidence 73 356999999999 6777777778884
No 23
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=36.54 E-value=1e+02 Score=32.53 Aligned_cols=59 Identities=15% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccC----ChhhHHHHHHHHHhccCCc-EEEEeCC
Q 008057 258 HILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRV----TPYGYSVMLKKLMDFAQGK-IVLALEG 317 (579)
Q Consensus 258 ~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~l----T~~gy~~l~~~l~~~a~gr-vv~vLEG 317 (579)
+.|.+++++++||++|+ +|-|+...+.-.-..| ...-|-+..+..+..-..+ =+++..|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 46788999999998766 8999997653222222 2334445555555553222 2444555
No 24
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.44 E-value=1.1e+02 Score=28.86 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=32.4
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCCCCCCCCccCChhhHHHHHHHHHh
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFD-AAAGDPLGGCRVTPYGYSVMLKKLMD 305 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfD-a~~~DpLG~l~lT~~gy~~l~~~l~~ 305 (579)
+|+..+. ..-.+++..++. +..++||+|+|..|.. .....+ ..-..+.|..+.+.+++
T Consensus 44 ~n~g~~G--~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~~---~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKTG--ATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLTS---IARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecCC--cCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCCC---HHHHHHHHHHHHHHHHh
Confidence 4665542 344556665544 4578999999999984 332111 11123445555555555
No 25
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=34.17 E-value=3.7e+02 Score=28.02 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhcc--CCcEEEEeCCCCCcchHHHHH
Q 008057 251 DYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA--QGKIVLALEGGYNLGSISNSV 328 (579)
Q Consensus 251 ~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a--~grvv~vLEGGY~~~~la~~~ 328 (579)
+|...|++. +|-+..|+-..+||-.|-.+..+| .+..+.+.|..+. +.++++|.+||.....+.
T Consensus 1 ~~~~~~~~~-~~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~--- 66 (280)
T cd04237 1 QFVDWFREA-APYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRL--- 66 (280)
T ss_pred ChHHHHHHH-hHHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHH---
Confidence 467778776 788899999999999887766543 1222333333221 347999999987754321
Q ss_pred HHHHHHHcCCCCCCCCCCCCCChhHHHHHHHH
Q 008057 329 LACMNVLLEDKPVAGSSEAYPFESTWRVIQAV 360 (579)
Q Consensus 329 ~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v 360 (579)
. .+|-++........+.+++...+..+
T Consensus 67 ----~-~~gi~~~~~~G~RvT~~~~l~~~~~~ 93 (280)
T cd04237 67 ----A-ERGLEPRYHRGLRITDAAALECVKEA 93 (280)
T ss_pred ----H-HcCCCccccCCcCcCCHHHHHHHHHH
Confidence 1 23333322223344555555555554
No 26
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=33.19 E-value=46 Score=32.88 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.9
Q ss_pred ceEEEEEcccccCC
Q 008057 178 NKILIVDWDVHHGN 191 (579)
Q Consensus 178 ~RVlIVD~DvHHGN 191 (579)
+||++||+|.++||
T Consensus 30 ~~VlliD~D~~~~~ 43 (251)
T TIGR01969 30 KKVLALDADITMAN 43 (251)
T ss_pred CeEEEEeCCCCCcc
Confidence 69999999999887
No 27
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=32.33 E-value=5e+02 Score=26.33 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=12.1
Q ss_pred ceEEEEEcccccCC
Q 008057 178 NKILIVDWDVHHGN 191 (579)
Q Consensus 178 ~RVlIVD~DvHHGN 191 (579)
+||++||+|.+..+
T Consensus 133 ~~VllID~D~~~~~ 146 (274)
T TIGR03029 133 EKTLLIDANLRDPV 146 (274)
T ss_pred CeEEEEeCCCCCcc
Confidence 79999999998754
No 28
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=29.49 E-value=1e+02 Score=27.64 Aligned_cols=43 Identities=30% Similarity=0.431 Sum_probs=25.9
Q ss_pred Ccce-EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Q 008057 234 LGYN-INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFD 279 (579)
Q Consensus 234 ~G~n-iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfD 279 (579)
.+.+ .|...+. .+-.+++..+...+.+ +...+||+|||+.|..
T Consensus 29 ~~~~~~n~~~~G--~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~N 72 (179)
T PF13472_consen 29 RGIEVYNLGVSG--ATSSDFLARLQRDVLR-FKDPKPDLVVISFGTN 72 (179)
T ss_dssp CCEEEEEEE-TT---BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HH
T ss_pred CCcEEEEEeecC--ccHhHHHHHHHHHHhh-hccCCCCEEEEEcccc
Confidence 3444 3666653 3445566666665555 5899999999999963
No 29
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=28.45 E-value=2.5e+02 Score=24.40 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCC
Q 008057 260 LLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGY 319 (579)
Q Consensus 260 v~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY 319 (579)
+...+.+++||+|.+|+-+. -+......+.+.+++...+ +.++++|.+
T Consensus 43 l~~~~~~~~pd~V~iS~~~~-----------~~~~~~~~l~~~~k~~~p~-~~iv~GG~~ 90 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVSMT-----------PNLPEAKRLARAIKERNPN-IPIVVGGPH 90 (121)
T ss_dssp HHHHHHHTTCSEEEEEESSS-----------THHHHHHHHHHHHHTTCTT-SEEEEEESS
T ss_pred HHHHHhcCCCcEEEEEccCc-----------CcHHHHHHHHHHHHhcCCC-CEEEEECCc
Confidence 34567889999999987521 2223345566666655433 444444443
No 30
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=28.33 E-value=48 Score=32.16 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCChhHHHHHHHHHHHHhcccchhh
Q 008057 348 YPFESTWRVIQAVRKKLSAFWPTLA 372 (579)
Q Consensus 348 ~p~~~~~~~i~~v~~~~~~~W~~l~ 372 (579)
.+..++.++++++++.+++||++|.
T Consensus 9 ~~~~~a~~~v~~v~~~qs~yw~~l~ 33 (178)
T PF09757_consen 9 VASPSAFETVKNVRRIQSKYWKCLN 33 (178)
T ss_dssp ---HHHHHHHHHHHHHHTTT-GGGT
T ss_pred CCCHHHeeeHHHHHHHHHHHHHHhc
Confidence 3577889999999999999999995
No 31
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=28.26 E-value=2.5e+02 Score=26.01 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=33.9
Q ss_pred eEeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhcc
Q 008057 237 NINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA 307 (579)
Q Consensus 237 niNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a 307 (579)
.+|..++. ..-.+++..+ .+.+..++||+|+|..|..=..... ...-..+.|..+.+.+++..
T Consensus 26 v~n~g~~G--~t~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~ 88 (174)
T cd01841 26 VNNLGIAG--ISSRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEF 88 (174)
T ss_pred EEeccccc--ccHHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHC
Confidence 35776653 2334444444 3344578999999999985332211 11112344555666555543
No 32
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=27.59 E-value=65 Score=32.49 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=35.2
Q ss_pred EEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH
Q 008057 273 IISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327 (579)
Q Consensus 273 vvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~ 327 (579)
+++.|+|+..-|-+ .+.+.|.+..+|++++.-++|-+.+++++-
T Consensus 154 vLtSG~~psAldGv-----------~~i~~lie~hkg~i~VmpG~Gi~~sNl~~i 197 (255)
T KOG4013|consen 154 VLTSGQEPSALDGV-----------YIIRELIELHKGKIDVMPGCGINSSNLANI 197 (255)
T ss_pred HhhcCCCcccccch-----------HHHHHHHHHhcCCEEEecCCCcchHHHHHH
Confidence 56789998888854 466777888899999999999998877653
No 33
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.49 E-value=2.6e+02 Score=25.80 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFD 279 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfD 279 (579)
+|..++. ..-.++...+++. + .++||+||++.|..
T Consensus 25 ~n~g~~G--~~~~~~~~~l~~~----~-~~~pd~vvl~~G~N 59 (169)
T cd01828 25 ANRGISG--DTTRGLLARLDED----V-ALQPKAIFIMIGIN 59 (169)
T ss_pred EecCccc--ccHHHHHHHHHHH----h-ccCCCEEEEEeecc
Confidence 4555543 2233444444433 3 67999999999964
No 34
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=26.19 E-value=38 Score=32.67 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHH--hCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeC
Q 008057 254 AVWDHILLPVAKD--FGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALE 316 (579)
Q Consensus 254 ~af~~iv~Pil~~--f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLE 316 (579)
..|+.+.+|+++. -++|+||+ |-+|.|.+...+|......+.+ .+.++++++-
T Consensus 79 e~fe~~~~~~L~~~~~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~-s~~~vi~vv~ 133 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSDLIVI---------DEIGKMELKSPGFREAVEKLLD-SNKPVIGVVH 133 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCHEEEE------------STTCCC-CHHHHHHHHHHC-TTSEEEEE--
T ss_pred HHHHHHHHHHHHhhcCCCCEEEE---------eccchhhhcCHHHHHHHHHHHc-CCCcEEEEEe
Confidence 3466655666665 58999999 9999999999999999988888 4446776654
No 35
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=26.12 E-value=3.2e+02 Score=30.62 Aligned_cols=70 Identities=9% Similarity=0.129 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHh-CCCEE-EEecCCCCCCCCCCCCccCChhhHHHHHHHHHhc--------cCCcEEEEeCCCCCcchHH
Q 008057 256 WDHILLPVAKDF-GPDII-IISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDF--------AQGKIVLALEGGYNLGSIS 325 (579)
Q Consensus 256 f~~iv~Pil~~f-~PdlI-vvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~--------a~grvv~vLEGGY~~~~la 325 (579)
+.+.|..+.+.| +|++| |++++.....||.+ ..+.+.+.+- ...+++.+--+||... ..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi----------~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs-~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDV----------DGLISKLNEELLKEKFPDREVHLIPIHTPSFVGS-MI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCH----------HHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc-HH
Confidence 455666777889 59987 66777777777744 4444444321 1236888888999863 44
Q ss_pred HHHHHHHHHHc
Q 008057 326 NSVLACMNVLL 336 (579)
Q Consensus 326 ~~~~a~~~~Ll 336 (579)
.++...+++|+
T Consensus 149 ~Gy~~a~~ali 159 (461)
T TIGR02931 149 TGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 36
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=25.87 E-value=1.5e+02 Score=31.98 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcch---HHHHHHHH
Q 008057 256 WDHILLPVAKDFGPDIIIISAG-FDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGS---ISNSVLAC 331 (579)
Q Consensus 256 f~~iv~Pil~~f~PdlIvvsaG-fDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~---la~~~~a~ 331 (579)
+.+.|..+.++++|++|+|... .....|| ++..+.+.+..-.+.+++.+--.||..+. ...++.++
T Consensus 62 L~~~i~~~~~~~~P~~i~v~~sC~~~iIGd----------D~~~v~~~~~~~~~~~vi~v~~~gf~~~~~~G~~~a~~~l 131 (398)
T PF00148_consen 62 LREAIKEIAEKYKPKAIFVVTSCVPEIIGD----------DIEAVARELQEEYGIPVIPVHTPGFSGSYSQGYDAALRAL 131 (398)
T ss_dssp HHHHHHHHHHHHSTSEEEEEE-HHHHHTTT----------THHHHHHHHHHHHSSEEEEEE--TTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEECCCCHHHhCC----------CHHHHHHHhhcccCCcEEEEECCCccCCccchHHHHHHHH
Confidence 3455666778999999987543 2333333 46677777776545589999999994332 23445555
Q ss_pred HHHHcC
Q 008057 332 MNVLLE 337 (579)
Q Consensus 332 ~~~Llg 337 (579)
++.+..
T Consensus 132 ~~~~~~ 137 (398)
T PF00148_consen 132 AEQLVK 137 (398)
T ss_dssp HHHHTT
T ss_pred Hhhccc
Confidence 555544
No 37
>PRK11519 tyrosine kinase; Provisional
Probab=25.78 E-value=3.8e+02 Score=31.81 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=12.6
Q ss_pred ceEEEEEcccccCC
Q 008057 178 NKILIVDWDVHHGN 191 (579)
Q Consensus 178 ~RVlIVD~DvHHGN 191 (579)
+||++||.|.+.++
T Consensus 556 ~rvLlID~Dlr~~~ 569 (719)
T PRK11519 556 KRVLLIDCDMRKGY 569 (719)
T ss_pred CcEEEEeCCCCCCc
Confidence 79999999999875
No 38
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.77 E-value=1.9e+02 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCEEEEecCCCC
Q 008057 260 LLPVAKDFGPDIIIISAGFDA 280 (579)
Q Consensus 260 v~Pil~~f~PdlIvvsaGfDa 280 (579)
+.+.+...+||+|+|+.|..=
T Consensus 48 ~~~~l~~~~pd~Vii~~G~ND 68 (189)
T cd01825 48 LQAQLAALPPDLVILSYGTNE 68 (189)
T ss_pred HHHHHhhCCCCEEEEECCCcc
Confidence 334677899999999999654
No 39
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=25.67 E-value=2e+02 Score=30.53 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCC----hhhHHHHHHHHHhccCCc-EEEEeCC
Q 008057 258 HILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT----PYGYSVMLKKLMDFAQGK-IVLALEG 317 (579)
Q Consensus 258 ~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT----~~gy~~l~~~l~~~a~gr-vv~vLEG 317 (579)
..|..++++++||++|+ +|-|+...+.-.-..|. ..-|-+..+..+.+-..+ =+++..|
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 46778899999998766 89999876642222221 233444455555543222 2444555
No 40
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=25.53 E-value=2.5e+02 Score=31.40 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCccCChhhHHHHHHHHHhc----cCCcEEEEeCCCCCcchHHHHHHH
Q 008057 256 WDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDF----AQGKIVLALEGGYNLGSISNSVLA 330 (579)
Q Consensus 256 f~~iv~Pil~~f~PdlIvvsaGf-Da~~~DpLG~l~lT~~gy~~l~~~l~~~----a~grvv~vLEGGY~~~~la~~~~a 330 (579)
+.+.|..+.+.|+|++|+|.++. ....||.+ ..+.+.+..- .+.+++.+--.||... ...++..
T Consensus 80 L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~-~~~G~~~ 148 (455)
T PRK14476 80 VEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKGA-LEDGWAA 148 (455)
T ss_pred HHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHHH
Confidence 34445566788999999665543 66667743 3444444432 2347888888999753 4445444
Q ss_pred HHHHH
Q 008057 331 CMNVL 335 (579)
Q Consensus 331 ~~~~L 335 (579)
.+.+|
T Consensus 149 a~~al 153 (455)
T PRK14476 149 AVEAI 153 (455)
T ss_pred HHHHH
Confidence 44443
No 41
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.88 E-value=1.3e+02 Score=26.62 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCc
Q 008057 261 LPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNL 321 (579)
Q Consensus 261 ~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~ 321 (579)
...+.+.+||+|.+|+--+.+. .....+.+.+++.....+.+++ ||...
T Consensus 43 ~~~~~~~~pdvV~iS~~~~~~~-----------~~~~~~i~~l~~~~~~~~~i~v-GG~~~ 91 (119)
T cd02067 43 VEAAKEEDADAIGLSGLLTTHM-----------TLMKEVIEELKEAGLDDIPVLV-GGAIV 91 (119)
T ss_pred HHHHHHcCCCEEEEeccccccH-----------HHHHHHHHHHHHcCCCCCeEEE-ECCCC
Confidence 4456789999999987633322 3356677777776431344433 44443
No 42
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=24.60 E-value=3.5e+02 Score=29.93 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCEEEE-ecCCCCCCCCCCCCccCChhhHHHHHHHHHhc---cCCcEEEEeCCCCCcchHHHHHHHH
Q 008057 256 WDHILLPVAKDFGPDIIII-SAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDF---AQGKIVLALEGGYNLGSISNSVLAC 331 (579)
Q Consensus 256 f~~iv~Pil~~f~PdlIvv-saGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~---a~grvv~vLEGGY~~~~la~~~~a~ 331 (579)
+.+.|..+.+.|+|++|+| ++......||. +..+.+.+..- .+-+++.+--.||.. +...++...
T Consensus 72 L~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~a 140 (429)
T cd03466 72 LKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDTA 140 (429)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHHH
Confidence 4455667788999998755 44445555553 45555555542 234688887888874 444555555
Q ss_pred HHHHc
Q 008057 332 MNVLL 336 (579)
Q Consensus 332 ~~~Ll 336 (579)
+++|.
T Consensus 141 ~~al~ 145 (429)
T cd03466 141 VRSIV 145 (429)
T ss_pred HHHHH
Confidence 55543
No 43
>PRK10818 cell division inhibitor MinD; Provisional
Probab=23.61 E-value=87 Score=31.72 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.7
Q ss_pred ceEEEEEcccccCCcc
Q 008057 178 NKILIVDWDVHHGNST 193 (579)
Q Consensus 178 ~RVlIVD~DvHHGNGT 193 (579)
+||++||+|.+.||-+
T Consensus 32 ~~vllvD~D~~~~~~~ 47 (270)
T PRK10818 32 KKTVVIDFDIGLRNLD 47 (270)
T ss_pred CeEEEEECCCCCCChh
Confidence 6999999999888743
No 44
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=23.53 E-value=57 Score=32.08 Aligned_cols=74 Identities=30% Similarity=0.526 Sum_probs=45.5
Q ss_pred EEEeecCCCCChh------hhhhhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecCCCccCCceeeeecCCC
Q 008057 440 VFYASFGSNMWKS------RFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPEC 513 (579)
Q Consensus 440 vwY~sygsn~~~~------r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s~~~w~~gg~af~~~~~ 513 (579)
||-=.|||=||++ |..+||.| =-.+-|.+++|-+ |+.. . .|=|.=|++.+
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~G----y~R~F~~~s~~hR----------------GTpe---~-PGrvltL~~~~ 56 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKG----YHRRFCQGSTDHR----------------GTPE---Q-PGRVLTLDPGE 56 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecC----cccceEeeccccC----------------CCcC---C-CcceeeeeeCC
Confidence 6888999999986 56666666 1111223333322 1111 1 25566677665
Q ss_pred CCCCceeeeeehhcHHHHHHH----HHhhc
Q 008057 514 DCRHKAYLCLYRITLEQFNDV----LLQEN 539 (579)
Q Consensus 514 ~~~~~~~~~~y~it~~Qf~dv----~~qe~ 539 (579)
+ +.+.|.+|+|..++-.++ -.-|+
T Consensus 57 ~--~~c~Gvayrv~~~~~~~~l~~L~~RE~ 84 (178)
T PF04752_consen 57 E--GSCWGVAYRVPEEDAEEVLEYLDEREM 84 (178)
T ss_pred C--CEEEEEEEEecCcCHHHHHHHHhhccc
Confidence 5 559999999999665444 45688
No 45
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=23.50 E-value=2.6e+02 Score=31.11 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCEEEEe-cCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH----HHH
Q 008057 256 WDHILLPVAKDFGPDIIIIS-AGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS----VLA 330 (579)
Q Consensus 256 f~~iv~Pil~~f~PdlIvvs-aGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~----~~a 330 (579)
+.+.|..+.++|+|++|+|. .......||. +..+.+.+..-.+-+++.+--.||... ...+ +.+
T Consensus 109 L~~~I~e~~~~~~P~~I~V~ttC~~~lIGdD----------i~~v~~e~~~~~~~~vi~v~t~gf~g~-~~~G~~~a~~a 177 (456)
T TIGR01283 109 LFHAIREIVERYHPPAVFVYSTCVPGLIGDD----------LEAVCKAAAEKTGIPVIPVDSEGFYGS-KNLGNKLACDA 177 (456)
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHhcCC----------HHHHHHHHHHHhCCCEEEEECCCCccc-hhHHHHHHHHH
Confidence 34555667788999988654 4445555554 444555555433457888878888653 3333 444
Q ss_pred HHHHHcC
Q 008057 331 CMNVLLE 337 (579)
Q Consensus 331 ~~~~Llg 337 (579)
++..+.+
T Consensus 178 l~~~~~~ 184 (456)
T TIGR01283 178 LLKHVIG 184 (456)
T ss_pred HHHHHhc
Confidence 5555544
No 46
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=23.12 E-value=1.3e+02 Score=26.26 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=13.1
Q ss_pred ceEEEEEcccccCC
Q 008057 178 NKILIVDWDVHHGN 191 (579)
Q Consensus 178 ~RVlIVD~DvHHGN 191 (579)
++|++||.|.++++
T Consensus 30 ~~~~l~d~d~~~~~ 43 (106)
T cd03111 30 RRVLLVDLDLQFGD 43 (106)
T ss_pred CcEEEEECCCCCCC
Confidence 69999999999987
No 47
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=22.92 E-value=3.6e+02 Score=25.79 Aligned_cols=60 Identities=18% Similarity=0.366 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhcc--CCcEEEEeCC
Q 008057 249 DADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA--QGKIVLALEG 317 (579)
Q Consensus 249 D~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a--~grvv~vLEG 317 (579)
..+...+|+.+ +..+.+.+||+||+ +| |=+.....+...+..+.+.+.++. ..+++++ -|
T Consensus 23 ~~~~~~~~~~~-~~~~~~~~~d~i~~-~G------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~G 84 (223)
T cd00840 23 REDQFEAFEEI-VELAIEEKVDFVLI-AG------DLFDSNNPSPEALELLIEALRRLKEAGIPVFII-AG 84 (223)
T ss_pred hHHHHHHHHHH-HHHHHhcCCCEEEE-CC------cccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEe-cC
Confidence 35677888776 45567889998776 33 433333344555667777777763 4455554 44
No 48
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.55 E-value=2.8e+02 Score=30.07 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH----HH
Q 008057 255 VWDHILLPVAKDFGPDIIIISAG-FDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS----VL 329 (579)
Q Consensus 255 af~~iv~Pil~~f~PdlIvvsaG-fDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~----~~ 329 (579)
-+.+.|.-+.+.|+|++|+|..+ .....||. +..+.+.+..-.+.+++.+--.||...+...+ +.
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~ 143 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIAND 143 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHH
Confidence 34555666788999997766444 44445553 45555555533345788888888876333334 44
Q ss_pred HHHHHHcC
Q 008057 330 ACMNVLLE 337 (579)
Q Consensus 330 a~~~~Llg 337 (579)
++++.|..
T Consensus 144 al~~~l~~ 151 (406)
T cd01967 144 AILDHLVG 151 (406)
T ss_pred HHHHHhcC
Confidence 55555544
No 49
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=22.12 E-value=1.1e+02 Score=31.06 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=13.6
Q ss_pred ceEEEEEcccccCCccccc
Q 008057 178 NKILIVDWDVHHGNSTQKM 196 (579)
Q Consensus 178 ~RVlIVD~DvHHGNGTq~i 196 (579)
+||++||.|.+ ||.|...
T Consensus 29 ~~VlliD~D~q-~~~~~~~ 46 (275)
T TIGR01287 29 KKVMIVGCDPK-ADSTRLL 46 (275)
T ss_pred CeEEEEeCCCC-CCccccc
Confidence 69999999998 4545433
No 50
>PRK03011 butyrate kinase; Provisional
Probab=21.91 E-value=1e+03 Score=25.81 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=50.5
Q ss_pred EEeCCCCCCCCCC-----------CCccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEE
Q 008057 138 AIVRPPGHHAEPD-----------EAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFF 206 (579)
Q Consensus 138 alvRPPGHHA~~~-----------~a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~i 206 (579)
+++-|+-|+-.++ +-.||--+|-.+||-+++......+...+++++-+ |+|+--..-.|.+++--
T Consensus 125 ~v~D~~~~~~~~~~a~~~~lp~i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hL----GtGig~gai~~Gk~idg 200 (358)
T PRK03011 125 FIVDPVVVDEMEPVARISGLPEIERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHL----GGGISVGAHRKGRVIDV 200 (358)
T ss_pred EEECCcccccCCHHHHHcCCCCcceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEe----CCCceeeEEECCEEEec
Confidence 4677888886653 46799999999999999876544344457888766 99998888888887766
Q ss_pred ecc
Q 008057 207 SVH 209 (579)
Q Consensus 207 SiH 209 (579)
+.=
T Consensus 201 s~g 203 (358)
T PRK03011 201 NNA 203 (358)
T ss_pred CCc
Confidence 543
No 51
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.62 E-value=3.8e+02 Score=29.77 Aligned_cols=71 Identities=6% Similarity=0.157 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCccCChhhHHHHHHHHHhc----cCCcEEEEeCCCCCcchHHHHHH-
Q 008057 256 WDHILLPVAKDFGPDIIIISAG-FDAAAGDPLGGCRVTPYGYSVMLKKLMDF----AQGKIVLALEGGYNLGSISNSVL- 329 (579)
Q Consensus 256 f~~iv~Pil~~f~PdlIvvsaG-fDa~~~DpLG~l~lT~~gy~~l~~~l~~~----a~grvv~vLEGGY~~~~la~~~~- 329 (579)
+.+.|..+.+.|+|++|+|.++ .....||.+ ..+.+.+.+- .+-+++.+--.||... ...++.
T Consensus 79 L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~-~~~G~~~ 147 (432)
T TIGR01285 79 IEEAIDTLCQRNKPKAIGLLSTGLTETRGEDI----------ARVVRQFREKHPQHKGTAVVTVNTPDFKGS-LEDGYAA 147 (432)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccccccCH----------HHHHHHHHhhcccccCCeEEEecCCCcCCc-hHHHHHH
Confidence 4455566778999998876544 444566643 4445544431 2347888889999863 344444
Q ss_pred ---HHHHHHcC
Q 008057 330 ---ACMNVLLE 337 (579)
Q Consensus 330 ---a~~~~Llg 337 (579)
++++.+.+
T Consensus 148 a~~al~~~~~~ 158 (432)
T TIGR01285 148 AVESIIEAWVP 158 (432)
T ss_pred HHHHHHHHHcc
Confidence 44444444
No 52
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=21.41 E-value=3.5e+02 Score=22.79 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEE
Q 008057 258 HILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLA 314 (579)
Q Consensus 258 ~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~v 314 (579)
..+...+++.++|+||+.+=-- -++.++ .+...++.|..-+..+|++|
T Consensus 92 ~~i~~~~~~~~~dliv~G~~~~----~~~~~~-----~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 92 DAIIEFAEEHNADLIVMGSRGR----SGLERL-----LFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHTTCSEEEEESSST----TSTTTS-----SSHHHHHHHHHHTSSEEEEE
T ss_pred hhhhhccccccceeEEEeccCC----CCccCC-----CcCCHHHHHHHcCCCCEEEe
Confidence 4456778999999999965432 222222 26667777877777777664
No 53
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.38 E-value=2.2e+02 Score=25.85 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=24.3
Q ss_pred HHHHHhCCCEEEEecCCCCCCCCCCCCcc--CChhhHHHHHHHHHhc
Q 008057 262 PVAKDFGPDIIIISAGFDAAAGDPLGGCR--VTPYGYSVMLKKLMDF 306 (579)
Q Consensus 262 Pil~~f~PdlIvvsaGfDa~~~DpLG~l~--lT~~gy~~l~~~l~~~ 306 (579)
..+..++||+|+|..|..=. ..+.. -..+.|..+.+.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~----~~~~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDL----VLNRDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCccc----ccCCCHHHHHHHHHHHHHHHHHh
Confidence 34556899999999998633 22211 1234455555555554
No 54
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.72 E-value=2.8e+02 Score=30.48 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecC-CCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcc
Q 008057 256 WDHILLPVAKDFGPDIIIISAG-FDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLG 322 (579)
Q Consensus 256 f~~iv~Pil~~f~PdlIvvsaG-fDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~ 322 (579)
+.+.|..+.++|+|++|+|... .....||. +..+.+.+..-.+-+++.+--.||...
T Consensus 73 L~~~I~~~~~~~~p~~I~v~~tC~~~iIGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 73 VVENITRKDKEEKPDLIVLTPTCTSSILQED----------LQNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHhhC----------HHHHHHHhhhccCCCeEEecCCCccch
Confidence 3344555678899998877665 55556664 344555554333457888878888764
No 55
>CHL00175 minD septum-site determining protein; Validated
Probab=20.66 E-value=1.1e+02 Score=31.35 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.7
Q ss_pred ceEEEEEcccccCCccc
Q 008057 178 NKILIVDWDVHHGNSTQ 194 (579)
Q Consensus 178 ~RVlIVD~DvHHGNGTq 194 (579)
+||++||.|.+.||-+.
T Consensus 45 ~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 45 YRVALIDADIGLRNLDL 61 (281)
T ss_pred CeEEEEeCCCCCCChhh
Confidence 69999999999998554
No 56
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.30 E-value=35 Score=28.16 Aligned_cols=10 Identities=50% Similarity=1.026 Sum_probs=7.6
Q ss_pred ccccccCcHH
Q 008057 153 MGFCLYNNVA 162 (579)
Q Consensus 153 ~GFC~fNnVA 162 (579)
--||||||--
T Consensus 16 TKFcYyNNy~ 25 (63)
T PF02701_consen 16 TKFCYYNNYN 25 (63)
T ss_pred CEEEeecCCC
Confidence 4699999953
Done!