Query 008057
Match_columns 579
No_of_seqs 256 out of 1626
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:06:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 100.0 4E-92 1.4E-96 750.9 35.9 356 12-373 35-418 (421)
2 2vqm_A HD4, histone deacetylas 100.0 4.2E-91 1.4E-95 747.7 32.9 360 9-373 4-389 (413)
3 1zz1_A Histone deacetylase-lik 100.0 9.2E-88 3.2E-92 712.3 35.8 340 13-368 1-365 (369)
4 4a69_A Histone deacetylase 3,; 100.0 3.8E-87 1.3E-91 707.7 38.2 367 12-423 2-376 (376)
5 3ew8_A HD8, histone deacetylas 100.0 5E-86 1.7E-90 699.7 34.9 364 9-420 10-380 (388)
6 3max_A HD2, histone deacetylas 100.0 1.9E-85 6.3E-90 692.0 38.1 358 12-416 2-367 (367)
7 3q9b_A Acetylpolyamine amidohy 100.0 2.6E-83 9E-88 669.9 30.5 309 16-337 2-341 (341)
8 1c3p_A Protein (HDLP (histone 100.0 9.3E-83 3.2E-87 675.3 33.3 313 13-341 2-319 (375)
9 3men_A Acetylpolyamine aminohy 100.0 7.5E-83 2.6E-87 670.2 32.1 310 13-337 20-359 (362)
10 2qik_A UPF0131 protein YKQA; N 98.3 2.6E-07 8.8E-12 94.3 4.6 91 429-540 113-207 (285)
11 3cry_A Gamma-glutamyl cyclotra 98.3 2.9E-07 9.8E-12 88.3 4.1 83 438-540 15-100 (188)
12 2g0q_A AT5G39720.1 protein; st 86.1 1.1 3.6E-05 42.2 6.0 75 438-539 16-92 (173)
13 2jqv_A AT3G28950, AIG2 protein 79.6 3 0.0001 38.5 6.2 75 438-539 7-83 (165)
14 4h08_A Putative hydrolase; GDS 45.2 76 0.0026 28.5 8.5 58 238-308 49-110 (200)
15 4hf7_A Putative acylhydrolase; 42.7 34 0.0012 31.5 5.8 69 238-313 54-123 (209)
16 3dff_A Teicoplanin pseudoaglyc 34.7 40 0.0014 33.5 5.0 35 250-284 130-164 (273)
17 3dfi_A Pseudoaglycone deacetyl 33.0 46 0.0016 32.9 5.2 35 250-284 127-161 (270)
18 1ans_A Neurotoxin III; NMR {An 25.9 37 0.0013 22.2 1.9 21 456-477 6-26 (27)
19 3p94_A GDSL-like lipase; serin 25.4 81 0.0028 28.0 5.1 37 237-279 49-85 (204)
20 3dci_A Arylesterase; SGNH_hydr 24.7 1.1E+02 0.0038 28.3 6.1 41 262-306 94-139 (232)
21 1yzf_A Lipase/acylhydrolase; s 21.8 2.8E+02 0.0096 23.9 7.9 67 238-314 43-110 (195)
22 3kjh_A CO dehydrogenase/acetyl 21.5 63 0.0022 29.9 3.6 13 178-191 29-41 (254)
23 2vpt_A Lipolytic enzyme; ester 20.7 78 0.0027 29.0 4.0 52 250-309 69-120 (215)
24 3bzw_A Putative lipase; protei 20.1 2.2E+02 0.0075 27.1 7.3 47 238-288 62-109 (274)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=4e-92 Score=750.88 Aligned_cols=356 Identities=42% Similarity=0.754 Sum_probs=317.1
Q ss_pred CCeEEEEecccccccCCC--CCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhccc-
Q 008057 12 KRRVGLLYDERMCKHNTP--DGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSK- 88 (579)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~--~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~- 88 (579)
.++|++|||++|+.|.+. .+..|||+|+|++.|+++|++.|+.+.|++++|++|++++|++|||++||+.+......
T Consensus 35 ~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~ 114 (421)
T 2pqp_A 35 PFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSR 114 (421)
T ss_dssp TTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCS
T ss_pred CCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhh
Confidence 368999999999999953 34679999999999999999999999999999999999999999999999865321100
Q ss_pred -ch------hh--hh-------hhhccccCceecc-cChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCCCCCCCCC
Q 008057 89 -QF------DS--RR-------DRIASKLNSIYLN-EGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDE 151 (579)
Q Consensus 89 -~~------~~--~~-------~~~~~~~~d~y~~-~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPGHHA~~~~ 151 (579)
.. +. .+ .++ ....|++++ .+|+++|++|+|++++|+++|++|++++|||++|||||||++++
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~p~gg~-~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpGHHA~~~~ 193 (421)
T 2pqp_A 115 LKLDNGKLAGLLAQRMFVMLPCGGV-GVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHST 193 (421)
T ss_dssp CCCCHHHHHHHHSCCCCEECTTSCE-ESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTTB
T ss_pred hhhhcccccccchhhhhhhccccCc-CCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCCCCCCCCC
Confidence 00 00 00 000 112356666 59999999999999999999999999999999999999999999
Q ss_pred CccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCC
Q 008057 152 AMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEG 231 (579)
Q Consensus 152 a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g 231 (579)
++|||+||||||||++|+++ +|++||+|||||||||||||+|||+||+|||||||++++|.|||+| |..+|+|.|
T Consensus 194 a~GFC~fNnvAiAa~~l~~~---~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgt--G~~~e~G~g 268 (421)
T 2pqp_A 194 AMGFCFFNSVAIACRQLQQQ---SKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGAG 268 (421)
T ss_dssp CBTTBSSCHHHHHHHHHHHH---STTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCC--CCTTCCCCG
T ss_pred CCcchhhCHHHHHHHHHHHh---cCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCC--CChhhccCC
Confidence 99999999999999999985 4799999999999999999999999999999999999888899986 899999999
Q ss_pred CCCcceEeeeCCCC---CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCccCChhhHHHHHHHHHhc
Q 008057 232 PGLGYNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD--PLGGCRVTPYGYSVMLKKLMDF 306 (579)
Q Consensus 232 ~G~G~niNVPLp~g---~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~D--pLG~l~lT~~gy~~l~~~l~~~ 306 (579)
+|+|||||||||.| +++|++|+.+|+++|+|++++|+||+||||||||+|.+| |||+|+||+++|.+++++|+++
T Consensus 269 ~g~g~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~ 348 (421)
T 2pqp_A 269 SGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNL 348 (421)
T ss_dssp GGTTCEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTS
T ss_pred CCccceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHH
Confidence 99999999999754 279999999999999999999999999999999999987 9999999999999999999999
Q ss_pred cCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCC---CCCCCChhHHHHHHHHHHHHhcccchhhc
Q 008057 307 AQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGS---SEAYPFESTWRVIQAVRKKLSAFWPTLAD 373 (579)
Q Consensus 307 a~grvv~vLEGGY~~~~la~~~~a~~~~Llg~~~~~~~---~~~~p~~~~~~~i~~v~~~~~~~W~~l~~ 373 (579)
|+||+|++|||||+++++++++.+++++|+|.++.+.. ....|.+++.++|+++++.+++||+||+.
T Consensus 349 a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~~~~~p~~~a~~~i~~v~~~~~~yW~~l~~ 418 (421)
T 2pqp_A 349 AGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 418 (421)
T ss_dssp GGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999998754321 23468889999999999999999999963
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=4.2e-91 Score=747.70 Aligned_cols=360 Identities=40% Similarity=0.746 Sum_probs=314.1
Q ss_pred CCCCCeEEEEecccccccCCCCC--CCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhc
Q 008057 9 RTIKRRVGLLYDERMCKHNTPDG--DYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNIS 86 (579)
Q Consensus 9 ~~~~~~~~lvyd~~~~~H~~~~~--~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~ 86 (579)
...+|+|++|||++|++|+++.+ ..|||+|+|++.|+++|++.|+.+.+++++|++|+.++|++|||++||+.++...
T Consensus 4 ~~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~ 83 (413)
T 2vqm_A 4 TKPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNP 83 (413)
T ss_dssp --CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCG
T ss_pred CCCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCc
Confidence 34578999999999999998653 5699999999999999999999999999999999999999999999998876543
Q ss_pred ccchhhhh-------h---------hhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCCCCCCCC
Q 008057 87 SKQFDSRR-------D---------RIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPD 150 (579)
Q Consensus 87 ~~~~~~~~-------~---------~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPGHHA~~~ 150 (579)
........ . ....+.+.+|...+|+++|++|+|++++|+++|++|++++|||++|||||||.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppGHHA~~~ 163 (413)
T 2vqm_A 84 LNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEES 163 (413)
T ss_dssp GGGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCCTTCBTT
T ss_pred hhhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeecccccccCcCC
Confidence 21100000 0 0011122334445899999999999999999999999999999999999999999
Q ss_pred CCccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccC
Q 008057 151 EAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGE 230 (579)
Q Consensus 151 ~a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~ 230 (579)
+++|||+||||||||++|++. +|++||||||||||||||||+|||+||+|||+|+|+++++.|||+| |+.+|+|.
T Consensus 164 ~a~GFC~~Nnvaiaa~~~~~~---~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgt--G~~~e~G~ 238 (413)
T 2vqm_A 164 TPMGFCYFNSVAVAAKLLQQR---LSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGT 238 (413)
T ss_dssp BCBTTBSSCHHHHHHHHHHHH---SCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCC--CCTTCCCS
T ss_pred CCCCccccchHHHHHHHHHHh---cCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCC--CCHHHcCC
Confidence 999999999999999999986 4799999999999999999999999999999999999888999986 89999999
Q ss_pred CCCCcceEeeeCCCC---CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCC--CCCCCccCChhhHHHHHHHHHh
Q 008057 231 GPGLGYNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCRVTPYGYSVMLKKLMD 305 (579)
Q Consensus 231 g~G~G~niNVPLp~g---~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~--DpLG~l~lT~~gy~~l~~~l~~ 305 (579)
|+|+|+|+||||+.| +++|++|+.+|+++|+|++++|+||+||||||||+|.+ ||||+|+||+++|.+++++|++
T Consensus 239 g~g~g~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~ 318 (413)
T 2vqm_A 239 GPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMG 318 (413)
T ss_dssp GGGTTCEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHT
T ss_pred CcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHH
Confidence 999999999999843 38999999999999999999999999999999999998 5699999999999999999999
Q ss_pred ccCCcEEEEeCCCCCcchHHHHHHHHHHHHcCCCCCCCC---CCCCCChhHHHHHHHHHHHHhcccchhhc
Q 008057 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGS---SEAYPFESTWRVIQAVRKKLSAFWPTLAD 373 (579)
Q Consensus 306 ~a~grvv~vLEGGY~~~~la~~~~a~~~~Llg~~~~~~~---~~~~p~~~~~~~i~~v~~~~~~~W~~l~~ 373 (579)
+|+||+|++|||||+++++++++.+++++|+|.+..+.. ....|..++.+.|+++++.+++||++|+.
T Consensus 319 ~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 319 LAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp SGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred hcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999997653321 12457889999999999999999999974
No 3
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=9.2e-88 Score=712.30 Aligned_cols=340 Identities=34% Similarity=0.602 Sum_probs=303.7
Q ss_pred CeEEEEecccccccCCCCC--------------CCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHH
Q 008057 13 RRVGLLYDERMCKHNTPDG--------------DYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENH 78 (579)
Q Consensus 13 ~~~~lvyd~~~~~H~~~~~--------------~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~Y 78 (579)
|+|+++||++|+.|.++.+ ..|||+|+|++.+++.|++.|+.+.+.+++|++|++++|++||+++|
T Consensus 1 m~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Y 80 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAH 80 (369)
T ss_dssp -CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHH
T ss_pred CeEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHH
Confidence 5799999999999998642 11999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc-cchhhhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCCCCCCCCCCccccc
Q 008057 79 VNLIKNISS-KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCL 157 (579)
Q Consensus 79 I~~l~~~~~-~~~~~~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPGHHA~~~~a~GFC~ 157 (579)
|+++++.+. ... ...+.+||+++++++++|++++|+++.|+++|++|++++|||++|||||||+++++||||+
T Consensus 81 v~~l~~~~~~~~~------~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppGHHA~~~~a~GFC~ 154 (369)
T 1zz1_A 81 LENMKRVSNLPTG------GDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCI 154 (369)
T ss_dssp HHHHHHHHHSTTC------EECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCCTTCCTTCCBTTBS
T ss_pred HHHHHHhCccccc------eecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCccCcCCCCCCCchH
Confidence 999998764 211 1112348999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCC-CCCCCCCccccCCCCCcc
Q 008057 158 YNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYP-ANDDGFYTMIGEGPGLGY 236 (579)
Q Consensus 158 fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyP-gt~~G~~~eiG~g~G~G~ 236 (579)
||||||||++|+++ +|++||+|||||||||||||+|||+||+|||+|||+++ ||| +| |..+|+|.|+|+|+
T Consensus 155 fNnvAiAa~~l~~~---~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~---~yP~~t--G~~~e~G~g~g~g~ 226 (369)
T 1zz1_A 155 FNNTSVAAGYARAV---LGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL---CFPPDS--GYSTERGAGNGHGY 226 (369)
T ss_dssp SCHHHHHHHHHHHT---SCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT---SSSTTC--CCTTCCCCGGGTTC
T ss_pred hhHHHHHHHHHHHh---cCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC---CCCCCC--CcccccCCCCCCce
Confidence 99999999999975 47999999999999999999999999999999999984 999 86 89999999999999
Q ss_pred eEeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhcc----CCcEE
Q 008057 237 NINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA----QGKIV 312 (579)
Q Consensus 237 niNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a----~grvv 312 (579)
++|||||+| ++|++|+.+|+++|+|++++|+||+||||||||+|.+||||+|+||+++|.+++++|+++| +||++
T Consensus 227 ~vNvPL~~g-~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv 305 (369)
T 1zz1_A 227 NINVPLPPG-SGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIV 305 (369)
T ss_dssp EEEEEECTT-CBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred EEeeecCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999875 78999
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHcCCCCCCCCCC-----CCCChhHHHHHHHHHHHHhccc
Q 008057 313 LALEGGYNLGSISNSVLACMNVLLEDKPVAGSSE-----AYPFESTWRVIQAVRKKLSAFW 368 (579)
Q Consensus 313 ~vLEGGY~~~~la~~~~a~~~~Llg~~~~~~~~~-----~~p~~~~~~~i~~v~~~~~~~W 368 (579)
++|||||++++++++|.+++++|+|.+. ...|. ..|.++..+.++++++.++++|
T Consensus 306 ~vleGGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 365 (369)
T 1zz1_A 306 FVQEGGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLAGMGGNTLLDAERAAIEEIVPLL 365 (369)
T ss_dssp EEECCCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHHTTCCCSCCHHHHHHHHTTGGGG
T ss_pred EEECCCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHhhccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999776 22221 1223333445555666666666
No 4
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-87 Score=707.72 Aligned_cols=367 Identities=20% Similarity=0.366 Sum_probs=317.9
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 008057 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (579)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (579)
+++|+++||++|..|.++. .|||+|+|++.|+++|++.|+.+.+++++|++|++++|++|||++||++|++.+.....
T Consensus 2 ~~~~~~~y~~~~~~~~~g~--~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGA--GHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQ 79 (376)
T ss_dssp CCCEEEECCTTTTCCCCCT--TCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGG
T ss_pred CCeEEEEEChHHhCcCCCC--CCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccch
Confidence 4689999999999998764 59999999999999999999999999999999999999999999999999987653221
Q ss_pred h---hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHHHH
Q 008057 92 S---RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASF 167 (579)
Q Consensus 92 ~---~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA~~ 167 (579)
. ....+. ...|++++++++++|++++|+++.|+++|++|+.++||+ +||| |||+++++||||+||||||||++
T Consensus 80 ~~~~~~~~~~-l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~--~~gG~HHA~~~~a~GFC~~NdvAiAa~~ 156 (376)
T 4a69_A 80 GFTKSLNAFN-VGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAIN--WAGGLHHAKKFEASGFCYVNDIVIGILE 156 (376)
T ss_dssp GGHHHHHHHT-CSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEE--TTCCCTTCBTTBCBTTBSSCHHHHHHHH
T ss_pred hhhhhhceec-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeee--CCCCCCcCCcCCCCcchhhhHHHHHHHH
Confidence 1 011111 124789999999999999999999999999999877654 5655 99999999999999999999999
Q ss_pred HHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCC
Q 008057 168 LLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRC 247 (579)
Q Consensus 168 l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~ 247 (579)
|++. .+||||||||||||||||+|||+||+|||||||+++.+ |||+| |..+|+|.|+|+|++||||||+| +
T Consensus 157 l~~~-----~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgt--G~~~e~G~g~g~g~~vNvPL~~G-~ 227 (376)
T 4a69_A 157 LLKY-----HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNY-FFPGT--GDMYEVGAESGRYYCLNVPLRDG-I 227 (376)
T ss_dssp HTTT-----CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTT-CTTCC--CCTTCCCCGGGTTSEEEEEECTT-C
T ss_pred HHHh-----CCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCc-CCCCC--CCccccCCCCCCceeEeeecCCC-C
Confidence 9863 48999999999999999999999999999999998643 99985 89999999999999999999998 9
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH
Q 008057 248 GDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327 (579)
Q Consensus 248 gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~ 327 (579)
+|++|+++|+++|.|++++|+||+||||||||+|.+||||+|+||++||.++++.++++ ++|+++++||||++.++++|
T Consensus 228 ~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~-~~p~v~v~eGGY~~~~var~ 306 (376)
T 4a69_A 228 DDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSF-NIPLLVLGGGGYTVRNVARC 306 (376)
T ss_dssp BHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHc-CCCEEEEECCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 68999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----HH
Q 008057 328 VLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK----VE 403 (579)
Q Consensus 328 ~~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v~~~~~~~W~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~----~~ 403 (579)
|..++..|+|.+.+... |.. .|++... |...|+....+++||.| ++
T Consensus 307 w~~~~a~l~g~~~~~~~----P~~--------------~~~~~~~------------p~~~l~~~~~~~~~~~n~~~~l~ 356 (376)
T 4a69_A 307 WTYETSLLVEEAISEEL----PYS--------------EYFEYFA------------PDFTLHPDVSTRIENQNSRQYLD 356 (376)
T ss_dssp HHHHHHHHTTCCCCSBC----CCC--------------TTGGGGT------------TTCBSSCCCCCCSCCCCCHHHHH
T ss_pred HHHHHHHhcCCCccCCC----CCc--------------hHHHHhC------------CCcccCCCCCCCCCCCCCHHHHH
Confidence 99999999997754332 221 3555553 33446665467788877 99
Q ss_pred HHHHHHHHHhhcccCCCCCc
Q 008057 404 TLEAVLQVALSKLKVDDGHA 423 (579)
Q Consensus 404 ~~~~~~~~~l~~l~~~~s~~ 423 (579)
.+++.|+|+|++|.++||.|
T Consensus 357 ~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 357 QIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp HHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999998765
No 5
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=5e-86 Score=699.71 Aligned_cols=364 Identities=24% Similarity=0.386 Sum_probs=316.6
Q ss_pred CCCCCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhccc
Q 008057 9 RTIKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSK 88 (579)
Q Consensus 9 ~~~~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~ 88 (579)
..++++|+++||++|+.|. ..|||+|+|++.+.++|++.|+.+.+.+++|++|++++|++|||++||++|++.+..
T Consensus 10 ~~~~~~~~~~y~~~~~~~~----~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~ 85 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSMC----DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQE 85 (388)
T ss_dssp ----CCCEEECCHHHHHHH----TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEChHHhccC----CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccc
Confidence 3445789999999999985 249999999999999999999999999999999999999999999999999987643
Q ss_pred chhhh--hhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHH
Q 008057 89 QFDSR--RDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAA 165 (579)
Q Consensus 89 ~~~~~--~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA 165 (579)
..... ...+. ...|++++++++++|++++|+++.|+++|++|+.++ |++|||| |||++++++|||+||||||||
T Consensus 86 ~~~~~~~~~~~~-lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~--Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa 162 (388)
T 3ew8_A 86 GDDDHPDSIEYG-LGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKV--AINWSGGWHHAKKDEASGFCYLNDAVLGI 162 (388)
T ss_dssp C--------CCS-CSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSE--EEETTCCCTTCBTTBCBTTBSSCHHHHHH
T ss_pred ccccchhhhhcc-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCce--eeecCCcccceeecCCCCchhhhHHHHHH
Confidence 21110 00111 123789999999999999999999999999998764 6779999 999999999999999999999
Q ss_pred HHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCC
Q 008057 166 SFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG 245 (579)
Q Consensus 166 ~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g 245 (579)
++|++ +.+||||||||||||||||+|||+||+|||+|||+++.+ |||+| |..+++|.|+|+||++|||||+|
T Consensus 163 ~~l~~-----~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgt--G~~~e~G~g~g~g~~vNvPL~~G 234 (388)
T 3ew8_A 163 LRLRR-----KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGT--GDVSDVGLGKGRYYSVNVPIQDG 234 (388)
T ss_dssp HHHTT-----TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTT-CTTCC--CCTTCCCCGGGTTSEEEEEECTT
T ss_pred HHHHh-----cCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCC-CCCCC--CCcccccCCCCcceeeeccCCCC
Confidence 99975 368999999999999999999999999999999998654 99986 89999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHH
Q 008057 246 RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSIS 325 (579)
Q Consensus 246 ~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la 325 (579)
++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||++||.++++.|+++ +.|+++++||||++.+++
T Consensus 235 -~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~-~~p~l~~~gGGY~~~~va 312 (388)
T 3ew8_A 235 -IQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQW-QLATLILGGGGYNLANTA 312 (388)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTT-CCEEEEECCCCCSHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhc-CCCEEEEECCCCChhHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 468999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----
Q 008057 326 NSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK---- 401 (579)
Q Consensus 326 ~~~~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v~~~~~~~W~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~---- 401 (579)
+||..++..|+|.+.+... |. ..||+... |...|... .++++|.|
T Consensus 313 r~w~~~~~~l~g~~l~~~l----P~--------------~~~~~~~~------------p~~~l~~~-~~~~~~~n~~~~ 361 (388)
T 3ew8_A 313 RCWTYLTGVILGKTLSSEI----PD--------------HEFFTAYG------------PDYVLEIT-PSCRPDRNEPHR 361 (388)
T ss_dssp HHHHHHHHHHHTCCCCSBC----CC--------------CTTGGGGT------------TTCBSCCC-CCSCCCCCCHHH
T ss_pred HHHHHHHHHHcCCCCCCCC----Cc--------------ccchhhcC------------CCccccCC-cccCCCCCCHHH
Confidence 9999999999997754322 22 25888764 34445553 56788877
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 008057 402 VETLEAVLQVALSKLKVDD 420 (579)
Q Consensus 402 ~~~~~~~~~~~l~~l~~~~ 420 (579)
|+.++..|+|+|++|+.+-
T Consensus 362 l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 362 IQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp HHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999876
No 6
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-85 Score=692.03 Aligned_cols=358 Identities=23% Similarity=0.425 Sum_probs=316.1
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 008057 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (579)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (579)
+++|+++||++|..|.++. .|||+|+|++.|+++|++.|+.+.+++++|++|++++|++|||++||++|++.+.....
T Consensus 2 ~~~v~~~y~~~~~~~~~g~--~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYYGQ--GHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMS 79 (367)
T ss_dssp CCCEEEECCGGGGGCCCCT--TCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGG
T ss_pred CCeEEEEECccccCcCCCC--CCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccc
Confidence 4689999999999999864 59999999999999999999999999999999999999999999999999987653211
Q ss_pred h---hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC-CCCCCCCCccccccCcHHHHHHH
Q 008057 92 S---RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASF 167 (579)
Q Consensus 92 ~---~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnVAIAA~~ 167 (579)
. ...++. ...|++++++++++|++++|+++.|+++|++|+. ++|++|||| |||++++++|||+||||||||++
T Consensus 80 ~~~~~~~~~~-l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~--~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~ 156 (367)
T 3max_A 80 EYSKQMQRFN-VGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQT--DMAVNWAGGLHHAKKSEASGFCYVNDIVLAILE 156 (367)
T ss_dssp GCHHHHHHTT-CSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSC--SEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHH
T ss_pred hhhhHhhhcC-CCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCc--ceEecCCCCCCcCCcCCCCCchhhhHHHHHHHH
Confidence 1 011111 1247999999999999999999999999998864 578999999 99999999999999999999999
Q ss_pred HHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCCcceEeeeCCCCCC
Q 008057 168 LLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRC 247 (579)
Q Consensus 168 l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~niNVPLp~g~~ 247 (579)
|++. .+||||||||||||||||+|||+||+|||+|+|++ +.|||+| |..+++|.|+|+|+++|||||+| +
T Consensus 157 l~~~-----~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~--~~~fPgt--g~~~e~G~g~g~g~~vNvPL~~g-~ 226 (367)
T 3max_A 157 LLKY-----HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGT--GDLRDIGAGKGKYYAVNFPMRDG-I 226 (367)
T ss_dssp HTTT-----CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEEC--SSCTTCC--CCTTCCCCGGGTTCEEEEEECTT-C
T ss_pred HHHc-----CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccC--CCCCCCC--CCccccCCCCCCceEEEEecCCC-C
Confidence 9863 48999999999999999999999999999999997 4699986 89999999999999999999998 9
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH
Q 008057 248 GDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327 (579)
Q Consensus 248 gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~ 327 (579)
+|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.+||.++++.++++ ++|+++++||||++.++++|
T Consensus 227 ~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~-~~p~v~~~eGGY~~~~var~ 305 (367)
T 3max_A 227 DDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTF-NLPLLMLGGGGYTIRNVARC 305 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhc-CCCEEEEeCCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 68999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----HH
Q 008057 328 VLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK----VE 403 (579)
Q Consensus 328 ~~a~~~~Llg~~~~~~~~~~~p~~~~~~~i~~v~~~~~~~W~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~----~~ 403 (579)
|..++..++|.+.+... |. ..||+.+. |...|+.+ .++++|.| ++
T Consensus 306 wt~~ta~~~~~~i~~~~----p~--------------~~~~~~~~------------p~~~l~~~-~~~~~~~n~~~~l~ 354 (367)
T 3max_A 306 WTYETAVALDCEIPNEL----PY--------------NDYFEYFG------------PDFKLHIS-PSNMTNQNTPEYME 354 (367)
T ss_dssp HHHHHHHHTTCCCCSBC----CC--------------CTTGGGGT------------TTCBSSCC-CCSCCCCCCHHHHH
T ss_pred HHHHHHHHhhcccccCC----Cc--------------hhhHHhhC------------CCeeccCC-cccccCCCCHHHHH
Confidence 99999999997654322 22 14666663 33445553 56777777 89
Q ss_pred HHHHHHHHHhhcc
Q 008057 404 TLEAVLQVALSKL 416 (579)
Q Consensus 404 ~~~~~~~~~l~~l 416 (579)
.+++.++|+|++|
T Consensus 355 ~i~~~~~~~l~~~ 367 (367)
T 3max_A 355 KIKQRLFENLRML 367 (367)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.6e-83 Score=669.94 Aligned_cols=309 Identities=28% Similarity=0.430 Sum_probs=278.2
Q ss_pred EEEecccccccCCCC----C--CCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccc
Q 008057 16 GLLYDERMCKHNTPD----G--DYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQ 89 (579)
Q Consensus 16 ~lvyd~~~~~H~~~~----~--~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~ 89 (579)
.++||++|+.|+++. + ..|||+|+|++.|++.|++.|+. .+++|++|++++|++|||++||++|++.+...
T Consensus 2 ~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~ 78 (341)
T 3q9b_A 2 RVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRW 78 (341)
T ss_dssp EEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHH
T ss_pred EEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhh
Confidence 579999999999863 1 25999999999999999999986 37899999999999999999999999875321
Q ss_pred hh-------------hh------------hhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC
Q 008057 90 FD-------------SR------------RDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG 144 (579)
Q Consensus 90 ~~-------------~~------------~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG 144 (579)
.. .+ ..+......||+++++||++|++++|+++.|+++|++|+ +++||++||||
T Consensus 79 ~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~-~~afal~rppG 157 (341)
T 3q9b_A 79 KAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGH-KAAFSLCRPPG 157 (341)
T ss_dssp HHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTC-SEEEECCSSCC
T ss_pred hhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCC-CceEecCCCCC
Confidence 00 00 001111235899999999999999999999999999998 89999999999
Q ss_pred CCCCCCCCccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCC
Q 008057 145 HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGF 224 (579)
Q Consensus 145 HHA~~~~a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~ 224 (579)
|||++++++|||+||||||||++|+++ |++||+|||||||||||||+|||+||+|||+|||+++ +.|||++ +|.
T Consensus 158 HHA~~~~a~GFC~~NnvaiAa~~l~~~----g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~-tG~ 231 (341)
T 3q9b_A 158 HHAGIDMFGGYCFINNAAVAAQRLLDK----GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDP-AEAFPHF-LGY 231 (341)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHHHT----TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECG-GGSTTCS-SCC
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHc----CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCC-ccCCCCC-CCc
Confidence 999999999999999999999999983 6899999999999999999999999999999999964 4699983 489
Q ss_pred CccccCCCCCcceEeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHH
Q 008057 225 YTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLM 304 (579)
Q Consensus 225 ~~eiG~g~G~G~niNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~ 304 (579)
.+|+|.|+|+|+++|||||+| ++|++|+.+|+++ +|.+++|+||+||||||||+|.+||||+|+||+++|.+++++|+
T Consensus 232 ~~e~G~g~g~g~~vNvpL~~g-~~d~~y~~~~~~~-l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~ 309 (341)
T 3q9b_A 232 AEETGKGAGAGTTANYPMGRG-TPYSVWGEALTDS-LKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIA 309 (341)
T ss_dssp TTCCCCGGGTTCEEEEEECTT-CBHHHHHHHHHHH-HHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHH
T ss_pred ccccCCCCCCceeEeeecCCC-CChHHHHHHHHHH-HHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999986 57889999999999999999999999999999999999999999
Q ss_pred hccCCcEEEEeCCCCCcchHHHHHHHHHHHHcC
Q 008057 305 DFAQGKIVLALEGGYNLGSISNSVLACMNVLLE 337 (579)
Q Consensus 305 ~~a~grvv~vLEGGY~~~~la~~~~a~~~~Llg 337 (579)
+++ +|++++|||||+++++++++.+++++|.|
T Consensus 310 ~~~-~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 310 ASG-VPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp TTS-SCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred HhC-CCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 985 69999999999999999999999999864
No 8
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=9.3e-83 Score=675.34 Aligned_cols=313 Identities=24% Similarity=0.358 Sum_probs=284.5
Q ss_pred CeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccch--
Q 008057 13 RRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQF-- 90 (579)
Q Consensus 13 ~~~~lvyd~~~~~H~~~~~~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~~~~~-- 90 (579)
++|+++||++|..|.++ ..|||+|+|++.|++.|++.|+.+.+++++|++|++++|++||+++||+.|++.+....
T Consensus 2 ~~t~~vy~~~~~~h~~g--~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~ 79 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYP--KNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP 79 (375)
T ss_dssp CCEEEEECGGGGGSCCC--TTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC
T ss_pred ceEEEEECHHHcCCCCC--CCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC
Confidence 57899999999999876 46999999999999999999999999999999999999999999999999998765211
Q ss_pred hhhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCCCC--CCCCCCCCccccccCcHHHHHHHH
Q 008057 91 DSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFL 168 (579)
Q Consensus 91 ~~~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRPPG--HHA~~~~a~GFC~fNnVAIAA~~l 168 (579)
......+.....|++++++++++|++++|+++.|+++|++|+ +.+|||| |||+++++||||+||||||||++|
T Consensus 80 ~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~-----~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l 154 (375)
T 1c3p_A 80 KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN-----VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYL 154 (375)
T ss_dssp TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC-----EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred hHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC-----ceeecCcccceeeeccCCCceeecHHHHHHHHH
Confidence 001111212235899999999999999999999999999998 3468888 999999999999999999999999
Q ss_pred HhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCcccc-CCCCCcceEeeeCCCCCC
Q 008057 169 LNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIG-EGPGLGYNINVPWENGRC 247 (579)
Q Consensus 169 ~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG-~g~G~G~niNVPLp~g~~ 247 (579)
+++ |.+||||||||||||||||+|||+||+|||||||+++ ..|||+| |..+|+| .|+|+|+++|||||+| +
T Consensus 155 ~~~----g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~-~~ffPgt--G~~~e~G~~g~g~g~~vNvPL~~g-~ 226 (375)
T 1c3p_A 155 RKK----GFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSP-EYAFPFE--KGFLEEIGEGKGKGYNLNIPLPKG-L 226 (375)
T ss_dssp HHT----TCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECT-TTSTTSS--SCCTTCCCCGGGTTSEEEEEECTT-C
T ss_pred HHh----CCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCC-CCCCCCC--CCccccCCcCCCCceEEEEeCCCC-C
Confidence 874 5799999999999999999999999999999999985 3489986 8999999 9999999999999998 9
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH
Q 008057 248 GDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327 (579)
Q Consensus 248 gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~vLEGGY~~~~la~~ 327 (579)
+|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||+++|.+++++|++++. +++++|||||++.+++++
T Consensus 227 ~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~-~vv~vleGGY~~~~l~~~ 305 (375)
T 1c3p_A 227 NDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFG-EGVYLGGGGYHPYALARA 305 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHC-SCEEECCCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhcc-ceEEEECCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 008057 328 VLACMNVLLEDKPV 341 (579)
Q Consensus 328 ~~a~~~~Llg~~~~ 341 (579)
|.++++.|+|.+.+
T Consensus 306 ~~~~~~~l~g~~~~ 319 (375)
T 1c3p_A 306 WTLIWCELSGREVP 319 (375)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999997643
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=7.5e-83 Score=670.15 Aligned_cols=310 Identities=28% Similarity=0.451 Sum_probs=278.7
Q ss_pred CeEEEEecccccccCCCCC------CCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhc
Q 008057 13 RRVGLLYDERMCKHNTPDG------DYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNIS 86 (579)
Q Consensus 13 ~~~~lvyd~~~~~H~~~~~------~~HpE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~eL~~VHs~~YI~~l~~~~ 86 (579)
+.+.++||++|+.|+++.. ..|||+|+|++.|+++|++.|+ .+++|++|++++|++|||++||++|++.+
T Consensus 20 ~~M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~ 95 (362)
T 3men_A 20 GSMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVH 95 (362)
T ss_dssp -CCEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHH
T ss_pred CceEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhh
Confidence 3457999999999998631 3599999999999999999997 47899999999999999999999999875
Q ss_pred ccchh----h--------------------hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHcCCCceEEEEeCC
Q 008057 87 SKQFD----S--------------------RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRP 142 (579)
Q Consensus 87 ~~~~~----~--------------------~~~~~~~~~~d~y~~~~s~eaA~lAaG~~l~aad~V~~g~~~~afalvRP 142 (579)
..... . ...+......||+++++||++|++|+|+++.|+++|++|+ +++||++||
T Consensus 96 ~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~-~~afal~rP 174 (362)
T 3men_A 96 REWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGA-PAAYALCRP 174 (362)
T ss_dssp HHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTC-SEEEECCSS
T ss_pred hhhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-CceEEeCCC
Confidence 31100 0 0001111235899999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCccccccCcHHHHHHHHHhhCCcCCcceEEEEEcccccCCccccccccCCceEEEecccCCCCCCCCCCCC
Q 008057 143 PGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDD 222 (579)
Q Consensus 143 PGHHA~~~~a~GFC~fNnVAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~ 222 (579)
|||||++++++|||+||||||||++|+++ .+||+|||||||||||||+|||+||+|||+|||+++ +.|||+. +
T Consensus 175 pGHHA~~~~a~GFC~fNnvAiAa~~l~~~-----~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~-t 247 (362)
T 3men_A 175 PGHHARVDAAGGFCYLNNAAIAAQALRAR-----HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDP-TNFYPAV-A 247 (362)
T ss_dssp CCTTCBTTBBBTTBSSCHHHHHHHHHTTT-----CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECC-TTSTTCS-S
T ss_pred CCCCCCCCCCCCccccCHHHHHHHHHHHc-----CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCC-ccCCCCC-C
Confidence 99999999999999999999999999873 589999999999999999999999999999999974 5699983 4
Q ss_pred CCCccccCCCCCcceEeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHH
Q 008057 223 GFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKK 302 (579)
Q Consensus 223 G~~~eiG~g~G~G~niNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~ 302 (579)
|..+|+|.|+|+|++||||||+| ++|++|+.+|+++ +|++++|+||+||||||||+|.+||||+|+||+++|.+++++
T Consensus 248 G~~~e~G~g~g~g~~vNvPL~~g-~~d~~yl~~~~~~-l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~ 325 (362)
T 3men_A 248 GFDDERGAGEGLGYNVNLPMPHG-SSEAAFFERVDDA-LRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHL 325 (362)
T ss_dssp CCTTCCCSGGGTTSEEEEEECTT-BCHHHHHHHHHHH-HHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHH
T ss_pred CccccccCCCCCceeEeeccCCC-CChHHHHHHHHHH-HHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHH
Confidence 89999999999999999999998 9999999999986 578999999999999999999999999999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCcchHHHHHHHHHHHHcC
Q 008057 303 LMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLE 337 (579)
Q Consensus 303 l~~~a~grvv~vLEGGY~~~~la~~~~a~~~~Llg 337 (579)
|++++ +|++++|||||+++++++++.+++++|.+
T Consensus 326 l~~~~-~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 326 IGALR-LPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp HHTTC-CCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHhhC-CCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 99985 79999999999999999999999999976
No 10
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=98.33 E-value=2.6e-07 Score=94.34 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=69.0
Q ss_pred Ccccccc----CcccEEEeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecCCCccCCc
Q 008057 429 TPWRSEL----SKVDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPG 504 (579)
Q Consensus 429 ~tW~~~~----~~~~vwY~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s~~~w~~g 504 (579)
-+|+... +.+.+||-+||||||.++|.++ ++|. ..++.......-.+++.|. . ..|+ |
T Consensus 113 GdW~~~~~~~~s~~~~~yFaYGSnm~~~~~~~~---~~p~-----------~~~~~~~~a~L~G~~l~F~-~--~~~~-~ 174 (285)
T 2qik_A 113 GDWKEHQMISKSKNPIYYFAYGSCMDNARFQKA---GVDH-----------YFQDPVGRAVLKGYTTRFT-L--KRED-G 174 (285)
T ss_dssp SCHHHHHHHHTTCSSEEEEECSGGGSSHHHHHH---TCGG-----------GSSCEEEEEEEETCEEEEE-E--EETT-E
T ss_pred CchhhhhhccccCCcEEEEEechhcCHhhcccc---cCCc-----------ccceEeEEEEEeCeEEEcC-c--CCCC-C
Confidence 4675532 3457999999999999999987 2221 1122323455668999999 3 3687 9
Q ss_pred eeeeecCCCCCCCceeeeeehhcHHHHHHHHHhhcC
Q 008057 505 GVAFLNPECDCRHKAYLCLYRITLEQFNDVLLQENV 540 (579)
Q Consensus 505 g~af~~~~~~~~~~~~~~~y~it~~Qf~dv~~qe~~ 540 (579)
|++.+-|+ . +.+.+.+|+||.+++..+-++|..
T Consensus 175 g~a~iv~~-g--~~v~Gvly~i~~~~l~~LD~~Eg~ 207 (285)
T 2qik_A 175 SRADMLED-G--GTTEGVLYRIPYSALSYLYKREGV 207 (285)
T ss_dssp EEEEEECS-S--CEEEEEEEEECGGGHHHHHHHTTT
T ss_pred eeeeEEEC-C--CEEEEEEEEECHHHHHHHHHhhCC
Confidence 99999997 4 679999999999999999999974
No 11
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=98.31 E-value=2.9e-07 Score=88.34 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=63.9
Q ss_pred ccEEEeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCcccccccccccceeeeecC---CCccCCceeeeecCCCC
Q 008057 438 VDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDS---SHTWGPGGVAFLNPECD 514 (579)
Q Consensus 438 ~~vwY~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~~~yf~~~s---~~~w~~gg~af~~~~~~ 514 (579)
..+||-.||||||.+||.+. .++.+.......-.++++|+..| +..|. ||++.+-|+..
T Consensus 15 ~~~~~FaYGSlm~~~~~~~~-----------------~~~~~~~~~a~l~gy~l~f~~~~~~~~~~~~-g~~~~lv~~~g 76 (188)
T 3cry_A 15 ESFLYFAYGSNLLTERIHLR-----------------NPSAAFFCVARLQDFKLDFGNSQGKTSQTWH-GGIATIFQSPG 76 (188)
T ss_dssp CEEEEEECSGGGSHHHHHHH-----------------CTTCEEEEEEEEEEEEEEEEEETTCCCTTTS-SCEEEEEEEEE
T ss_pred CCEEEEEEccCCCHHHHHhh-----------------CCCCceEEEEEEcCEEEEECCCCCCCcCCCC-CeeEeEEeCCC
Confidence 46999999999999999862 12222222333446699999983 25797 89999988554
Q ss_pred CCCceeeeeehhcHHHHHHHHHhhcC
Q 008057 515 CRHKAYLCLYRITLEQFNDVLLQENV 540 (579)
Q Consensus 515 ~~~~~~~~~y~it~~Qf~dv~~qe~~ 540 (579)
+.+.+.+|.||.+++..+-++|..
T Consensus 77 --~~V~G~ly~v~~~~l~~LD~~Eg~ 100 (188)
T 3cry_A 77 --DEVWGVVWKMNKSNLNSLDEQQGV 100 (188)
T ss_dssp --EEEEEEEEEEEGGGHHHHHHHTTG
T ss_pred --CEEEEEEEEECHHHHHHHHHHhCC
Confidence 569999999999999999999974
No 12
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=86.06 E-value=1.1 Score=42.17 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=51.8
Q ss_pred ccEEEeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCccccccccccc-ceeeeecCCCccCCceeeeecCCCCCC
Q 008057 438 VDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPH-HLFFGHDSSHTWGPGGVAFLNPECDCR 516 (579)
Q Consensus 438 ~~vwY~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~-~~yf~~~s~~~w~~gg~af~~~~~~~~ 516 (579)
...||-.|||||+.+.+- ++.+..| . ..+-+|++ ++|+. |+ +|..-+=|...
T Consensus 16 ~~~~vFvYGSL~~~~~~~-~~l~~~~----------------~-~~~A~l~Gy~l~~~------~~-~~yP~lv~~~g-- 68 (173)
T 2g0q_A 16 QLHNVFVYGSFQDPDVIN-VMLDRTP----------------E-IVSATLPGFQRFRL------KG-RLYPCIVPSEK-- 68 (173)
T ss_dssp SSEEEEECSGGGCHHHHH-HHTSSCC----------------E-EEEEEEETCEECCC------CS-SSCCCEECCTT--
T ss_pred CCEEEEEEcCCCCCccCH-HHhcCCC----------------c-eeEEEEcCeEEEee------CC-CeeeEEEECCC--
Confidence 358999999999999876 4555221 1 13344554 56653 33 56666666554
Q ss_pred Cceeeeee-hhcHHHHHHHHHhhc
Q 008057 517 HKAYLCLY-RITLEQFNDVLLQEN 539 (579)
Q Consensus 517 ~~~~~~~y-~it~~Qf~dv~~qe~ 539 (579)
+.+.|-+| .|+.+++..+-..|.
T Consensus 69 ~~V~G~v~~~v~~~~l~~LD~~Eg 92 (173)
T 2g0q_A 69 GEVHGKVLMGVTSDELENLDAVEG 92 (173)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CEEEEEEEEEcCHHHHHHHHHHhh
Confidence 56899887 599999999999994
No 13
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=79.65 E-value=3 Score=38.48 Aligned_cols=75 Identities=11% Similarity=-0.035 Sum_probs=49.5
Q ss_pred ccEEEeecCCCCChhhhhhhhhCCccCCCCCccCCCCCCCCccccccccccc-ceeeeecCCCccCCceeeeecCCCCCC
Q 008057 438 VDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPH-HLFFGHDSSHTWGPGGVAFLNPECDCR 516 (579)
Q Consensus 438 ~~vwY~sygsn~~~~r~~cyi~gg~~~g~~~~~~g~~d~~~p~~~~~~~~p~-~~yf~~~s~~~w~~gg~af~~~~~~~~ 516 (579)
...||-.|||||+.+.+ .++.|.. ....+-+|++ +++|. |+ ++..-+-|.. .
T Consensus 7 ~~~~vFvYGSL~~~~~~-~~~~~~~-----------------~~~~~a~l~Gy~~~~~------~~-~~yP~lv~~~--~ 59 (165)
T 2jqv_A 7 QSHNVFVYGSILEPAVA-AVILDRT-----------------ADTVPAVLHGYHRYKL------KG-LPYPCIVSSD--S 59 (165)
T ss_dssp SCEEEEESSTTSSHHHH-HHHTSSC-----------------CEEEEEEEETCEECCC------TT-SSSCCEESCC--S
T ss_pred CceEEEEEcCCCCchhh-HHHhCCC-----------------CccceEEEeCeEEEec------CC-CCCCEEEECC--C
Confidence 34899999999999998 5665521 1233345554 55664 22 2333333433 3
Q ss_pred Cceeeeeeh-hcHHHHHHHHHhhc
Q 008057 517 HKAYLCLYR-ITLEQFNDVLLQEN 539 (579)
Q Consensus 517 ~~~~~~~y~-it~~Qf~dv~~qe~ 539 (579)
+.+.|-+|. |+.+++..+-.-|.
T Consensus 60 ~~V~G~v~~~v~~~~l~~LD~~E~ 83 (165)
T 2jqv_A 60 GKVNGKVITGVSDAELNNFDVIEG 83 (165)
T ss_dssp SEEEEEEEEEECHHHHHHHHHTTT
T ss_pred CEEEEEEEEeCCHHHHHHHHHhcc
Confidence 569999996 99999988888884
No 14
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=45.22 E-value=76 Score=28.52 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=34.1
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhH----HHHHHHHHhccC
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGY----SVMLKKLMDFAQ 308 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy----~~l~~~l~~~a~ 308 (579)
.|.....+ ++....+..++. .+...+||+|+|..|.. | +..+++.| ..+.+.+++...
T Consensus 49 ~~~~~~~~-~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~p 110 (200)
T 4h08_A 49 GRLSNSKS-VGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYAP 110 (200)
T ss_dssp EEEEESCC-TTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEeccCC-ccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhCC
Confidence 34444443 555555555544 34678999999999975 3 23455554 445555555543
No 15
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=42.66 E-value=34 Score=31.47 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=34.4
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCCccCChhhHHHHHHHHHhccCCcEEE
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVL 313 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGf-Da~~~DpLG~l~lT~~gy~~l~~~l~~~a~grvv~ 313 (579)
||..+.. ..-.+.+.-|++.+ ..++||+|||..|. |...+.+.....-..+.+..+.+.++. .+.++++
T Consensus 54 iN~Gi~G--~tt~~~l~r~~~~v----~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~-~~~~iil 123 (209)
T 4hf7_A 54 IGRGISG--QTSYQFLLRFREDV----INLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKA-NKIKVIL 123 (209)
T ss_dssp EEEECTT--CCHHHHHHHHHHHT----GGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred EEeccCc--ccHHHHHHHHHHHH----HhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhc-cCceEEE
Confidence 5665542 23344555555433 35799999999997 433322221222223344455554443 2334444
No 16
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=34.69 E-value=40 Score=33.48 Aligned_cols=35 Identities=11% Similarity=0.303 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC
Q 008057 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD 284 (579)
Q Consensus 250 ~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~D 284 (579)
..+...+...|..++++++||+||.-.|.|.|.+.
T Consensus 130 ~~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpDH 164 (273)
T 3dff_A 130 HDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDH 164 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCCCChHH
Confidence 34556667778889999999999998888877654
No 17
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=33.01 E-value=46 Score=32.90 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC
Q 008057 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD 284 (579)
Q Consensus 250 ~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~D 284 (579)
..+...+...|..++++++||+||.-.|.|.|.+.
T Consensus 127 ~~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 127 HDLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 34555667778889999999999998888877654
No 18
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=25.93 E-value=37 Score=22.19 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.3
Q ss_pred hhhhCCccCCCCCccCCCCCCC
Q 008057 456 CYIEGGQVEGMQKPCSGSKDRN 477 (579)
Q Consensus 456 cyi~gg~~~g~~~~~~g~~d~~ 477 (579)
||+ ||+|-|-.-..-||.-|.
T Consensus 6 C~~-~gCpWGQ~~~~~GCSgpk 26 (27)
T 1ans_A 6 CYW-GGCPWGQNCYPEGCSGPK 26 (27)
T ss_dssp STT-TTCSSSCSSCSSCSSSSC
T ss_pred ccc-cCCccccccccccCcCCC
Confidence 676 999999998888997653
No 19
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=25.42 E-value=81 Score=28.01 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=22.9
Q ss_pred eEeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Q 008057 237 NINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFD 279 (579)
Q Consensus 237 niNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfD 279 (579)
.+|..++. ..-.+.+..++. .+..++||+|+|..|..
T Consensus 49 v~n~g~~G--~~~~~~~~~~~~----~~~~~~pd~vvi~~G~N 85 (204)
T 3p94_A 49 FVDRGISG--QTTSEMLVRFRQ----DVINLKPKAVVILAGIN 85 (204)
T ss_dssp EEEEECTT--CCHHHHHHHHHH----HTGGGCEEEEEEECCHH
T ss_pred eEEcccCc--ccHHHHHHHHHH----HHHhCCCCEEEEEeecC
Confidence 45666543 233445544433 33458999999999974
No 20
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=24.72 E-value=1.1e+02 Score=28.26 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHhCC-CEEEEecCCCCCCCCCCCCccCChh----hHHHHHHHHHhc
Q 008057 262 PVAKDFGP-DIIIISAGFDAAAGDPLGGCRVTPY----GYSVMLKKLMDF 306 (579)
Q Consensus 262 Pil~~f~P-dlIvvsaGfDa~~~DpLG~l~lT~~----gy~~l~~~l~~~ 306 (579)
..+..++| |+|||..|.. |-......+.+ .+..+.+.+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 34567899 9999999964 32222223444 444555556654
No 21
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=21.80 E-value=2.8e+02 Score=23.90 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=34.9
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHH-HHHHHHhccCCcEEEE
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSV-MLKKLMDFAQGKIVLA 314 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~-l~~~l~~~a~grvv~v 314 (579)
+|...+. ..-.+.+..+++. +...+||+|||+.|..=... ....+.+.|.. +.+++..+.+.+++++
T Consensus 43 ~n~g~~G--~~~~~~~~~~~~~----~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~~~~vi~~ 110 (195)
T 1yzf_A 43 INAGMPG--DTTEDGLKRLNKE----VLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIGSEKVILI 110 (195)
T ss_dssp EEEECTT--CCHHHHHHHHHHH----TGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred EeCCCCC--CCHHHHHHHHHHh----hhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4666642 3344455444443 34589999999999743331 12345555543 3333333322345444
No 22
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=21.53 E-value=63 Score=29.87 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=11.4
Q ss_pred ceEEEEEcccccCC
Q 008057 178 NKILIVDWDVHHGN 191 (579)
Q Consensus 178 ~RVlIVD~DvHHGN 191 (579)
+||++||+|.+ ||
T Consensus 29 ~~VlliD~D~~-~~ 41 (254)
T 3kjh_A 29 DKIYAVDGDPD-SC 41 (254)
T ss_dssp SCEEEEEECTT-SC
T ss_pred CeEEEEeCCCC-cC
Confidence 79999999995 55
No 23
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=20.66 E-value=78 Score=28.95 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCccCChhhHHHHHHHHHhccCC
Q 008057 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQG 309 (579)
Q Consensus 250 ~~Yl~af~~iv~Pil~~f~PdlIvvsaGfDa~~~DpLG~l~lT~~gy~~l~~~l~~~a~g 309 (579)
.+.+..++.. +..++||+|+|..|..=... ....+.+.|..+.+.+++...+
T Consensus 69 ~~~~~~l~~~----l~~~~pd~vvi~~G~ND~~~----~~~~~~~~l~~li~~i~~~~p~ 120 (215)
T 2vpt_A 69 PQIASNINNW----LNTHNPDVVFLWIGGNDLLL----NGNLNATGLSNLIDQIFTVKPN 120 (215)
T ss_dssp HHHHHHHHHH----HHHHCCSEEEEECCHHHHHH----HCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH----hhccCCCEEEEEccccccCC----CCChhHHHHHHHHHHHHHhCCC
Confidence 4455544443 34689999999999742211 1123467888888888886543
No 24
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=20.07 E-value=2.2e+02 Score=27.07 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=26.9
Q ss_pred EeeeCCCCCCChhHHHHHHHHHHHHHHHHhCCCEEEEecCC-CCCCCCCCCC
Q 008057 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGG 288 (579)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~iv~Pil~~f~PdlIvvsaGf-Da~~~DpLG~ 288 (579)
+|..... ..-.+.+..|+.++ .. ...+||+|+|..|. |.....|++.
T Consensus 62 ~N~G~~G--~tt~~~~~~~~~~l-~~-~~~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 62 FVYGISG--RQWDDVPRQAEKLK-KE-HGGEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp EECCCTT--CCGGGHHHHHHHHH-HH-HTTTCCEEEEECCHHHHHTTCCCCC
T ss_pred EEeecCC--CCHHHHHHHHHHHH-hc-cCCCCCEEEEEEecccCcccCCCcc
Confidence 3554432 22334555565532 11 22789999999998 5555555554
Done!