RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008057
(579 letters)
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 261 bits (668), Expect = 1e-82
Identities = 153/389 (39%), Positives = 227/389 (58%), Gaps = 32/389 (8%)
Query: 10 TIKRRVGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKD 67
T+ GL+YD M KH GD HPE+ RI++IW++LQ G+ +C L ++A
Sbjct: 1 TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASL 60
Query: 68 KNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEGS 110
+ L SVH+E HV L + ++A L ++I+ S
Sbjct: 61 EELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHS 120
Query: 111 SEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLN 170
S AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L
Sbjct: 121 SNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQ 180
Query: 171 ERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGE 230
+ +KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P G +G
Sbjct: 181 QSK---ASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFP--GSGAVDEVGA 235
Query: 231 GPGLGYNINVPWE---NGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD--P 285
G G G+N+NV W + GD +YLA + +++P+A++F PD++++SAGFDAA G P
Sbjct: 236 GSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAP 295
Query: 286 LGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSS 345
LGG V+ + M ++LM+ A G +VLALEGG++L +I ++ AC+ LL ++ S
Sbjct: 296 LGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSE 355
Query: 346 EAY---PFESTWRVIQAVRKKLSAFWPTL 371
E + P + R ++AV + S +W +
Sbjct: 356 EGWKQKPNLNAIRSLEAVIRVHSKYWGCM 384
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 214 bits (546), Expect = 6e-65
Identities = 79/321 (24%), Positives = 139/321 (43%), Gaps = 16/321 (4%)
Query: 19 YDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENH 78
Y D + P R + + ++A + ++ ++ K A + + + HT+ +
Sbjct: 7 YSPEYVSM----CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62
Query: 79 VNLIKNISSKQFDSRRDRIASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAF 137
+ ++ +S + D D I L EG + A G+ I A+ + +G A
Sbjct: 63 LQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAI 122
Query: 138 AIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMF 197
HHA+ DEA GFC N+ + L + +IL VD D+HHG+ + F
Sbjct: 123 NW-SGGWHHAKKDEASGFCYLNDAVLGILRLRRK-----FERILYVDLDLHHGDGVEDAF 176
Query: 198 WKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWD 257
+V+ S+H+ G F D + +G G G Y++NVP ++ D Y + +
Sbjct: 177 SFTSKVMTVSLHKFSPGFFPGTGD---VSDVGLGKGRYYSVNVPIQD-GIQDEKYYQICE 232
Query: 258 HILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEG 317
+L V + F P +++ G D AGDP+ +TP G LK ++ + ++ G
Sbjct: 233 SVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQ-LATLILGGG 291
Query: 318 GYNLGSISNSVLACMNVLLED 338
GYNL + + V+L
Sbjct: 292 GYNLANTARCWTYLTGVILGK 312
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 199 bits (506), Expect = 4e-59
Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 11/328 (3%)
Query: 13 RRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
++V L+ K+ P HP R+ + A + ++ ++ A + LL
Sbjct: 1 KKVKLIGTLDYGKYRYPKN--HPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLL 58
Query: 73 VHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGE 132
HTE+++N + Q + R Y N S ++ + + + E
Sbjct: 59 FHTEDYINTLMEAERCQCVPKGAR-EKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFL 117
Query: 133 LNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNS 192
+ HHA A GFC NN AV +L + G +IL +D D HH +
Sbjct: 118 KGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYL----RKKGFKRILYIDLDAHHCDG 173
Query: 193 TQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252
Q+ F+ + F + H+ + + GF IGEG G GYN+N+P D ++
Sbjct: 174 VQEAFYDTDQ--VFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPK-GLNDNEF 230
Query: 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIV 312
L + L V + F P++ ++ G D D L ++ + + + G+ V
Sbjct: 231 LFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVF-GEGV 289
Query: 313 LALEGGYNLGSISNSVLACMNVLLEDKP 340
GGY+ +++ + L +
Sbjct: 290 YLGGGGYHPYALARAWTLIWCELSGREV 317
>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 255
Score = 30.1 bits (66), Expect = 0.59
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 189 HGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNIN 239
+ P + + H + P + DGF + + PGLG +I+
Sbjct: 197 KNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDRDGFVH-VPDRPGLGEDID 246
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 28.6 bits (62), Expect = 2.1
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 1/82 (1%)
Query: 179 KILIVDWDVHHGNSTQKM-FWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYN 237
+ IVD D+ N + P L + G ++ G L
Sbjct: 32 DVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKVVPAGVSLEGL 91
Query: 238 INVPWENGRCGDADYLAVWDHI 259
E + D +
Sbjct: 92 RKANPEKLEDVLTQIMESTDIL 113
>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 342
Score = 28.3 bits (62), Expect = 2.4
Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 3/169 (1%)
Query: 344 SSEAYPFESTW--RVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK 401
E ST R + + L+A +P + + + P H + S+ +
Sbjct: 66 KHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILLWQPIPVHTVPLSEDQLLYLP 125
Query: 402 VETLEAVLQVALSKLKVDDGHAELGMATPWRSELSKVDVFYASFGSNMWKSRFLCYIEGG 461
++ LK ++ L + + L K+ + +W +
Sbjct: 126 FRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYC-E 184
Query: 462 QVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLN 510
V P ++D L + L+ H G +N
Sbjct: 185 SVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVLVN 233
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273
{Salmonella typhimurium [TaxId: 90371]}
Length = 278
Score = 27.8 bits (60), Expect = 3.3
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 185 WDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNIN 239
+H + + E T ++G+Y + E PGLG +N
Sbjct: 212 AALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYY-VAPEQPGLGQELN 265
>d2bema_ b.1.18.2 (A:) Chitin-binding protein CBP21 {Serratia
marcescens [TaxId: 615]}
Length = 170
Score = 26.3 bits (58), Expect = 7.7
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 225 YTMIGEGPGLGYNINVPWENGRCGDADYLAVWD 257
+ G P R G LAVWD
Sbjct: 120 FNDGGAIPAAQVTHQCNIPADRSGSHVILAVWD 152
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 26.7 bits (58), Expect = 7.9
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 19 YDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKD 67
D HP+ I+ I+N+ A G P + +A+
Sbjct: 175 SDLAAA-LGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARR 222
>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas
campestris pv. campestris [TaxId: 340]}
Length = 252
Score = 26.4 bits (57), Expect = 8.1
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 187 VHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNIN 239
+ + + R + F H H+ G Y E PG ++
Sbjct: 181 LAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYL-APEVPGFSAEMH 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.418
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,219,371
Number of extensions: 106664
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 13
Length of query: 579
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 489
Effective length of database: 1,171,896
Effective search space: 573057144
Effective search space used: 573057144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)